Query 002691
Match_columns 892
No_of_seqs 614 out of 4161
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:11:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-98 4E-103 877.6 52.1 837 14-885 8-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-64 2.9E-69 627.4 47.8 633 158-852 186-911 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.1E-44 4.5E-49 384.5 18.4 277 161-440 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.8 2.5E-20 5.5E-25 232.9 17.1 316 513-852 116-446 (968)
5 PLN00113 leucine-rich repeat r 99.8 4.4E-20 9.6E-25 230.7 18.4 320 512-866 137-482 (968)
6 PLN03210 Resistant to P. syrin 99.8 2.2E-19 4.8E-24 224.1 18.2 312 515-850 589-946 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 1.6E-21 3.6E-26 206.5 -0.8 348 495-870 34-397 (1255)
8 KOG4194 Membrane glycoprotein 99.8 1.1E-19 2.4E-24 191.9 3.7 309 511-852 98-433 (873)
9 KOG0444 Cytoskeletal regulator 99.8 1.1E-20 2.3E-25 200.4 -4.1 327 510-865 27-368 (1255)
10 KOG4194 Membrane glycoprotein 99.7 3.8E-19 8.2E-24 187.9 -0.4 293 513-842 147-447 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 1.8E-18 3.9E-23 175.1 -4.6 314 509-845 200-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.5 6.8E-17 1.5E-21 163.9 -10.6 244 511-784 64-308 (565)
13 KOG4658 Apoptotic ATPase [Sign 99.5 2.4E-14 5.2E-19 169.6 7.5 337 496-871 526-879 (889)
14 KOG0617 Ras suppressor protein 99.5 3.9E-16 8.4E-21 140.1 -6.0 164 506-688 24-189 (264)
15 PRK15387 E3 ubiquitin-protein 99.5 6.5E-13 1.4E-17 154.1 15.2 252 496-821 204-456 (788)
16 KOG0618 Serine/threonine phosp 99.4 9.6E-15 2.1E-19 163.5 -3.7 252 538-822 219-488 (1081)
17 PRK15387 E3 ubiquitin-protein 99.4 1.9E-12 4.2E-17 150.2 12.5 255 516-845 202-456 (788)
18 PRK15370 E3 ubiquitin-protein 99.4 8.1E-13 1.8E-17 154.4 9.1 246 518-821 181-426 (754)
19 KOG0618 Serine/threonine phosp 99.4 1E-13 2.2E-18 155.3 1.2 229 515-783 45-274 (1081)
20 PRK15370 E3 ubiquitin-protein 99.3 3.5E-12 7.5E-17 149.2 11.5 236 502-785 187-427 (754)
21 PRK04841 transcriptional regul 99.3 1.8E-10 4E-15 143.6 25.8 288 158-487 16-332 (903)
22 KOG0617 Ras suppressor protein 99.3 1.3E-13 2.9E-18 124.0 -4.0 131 509-642 50-182 (264)
23 PRK00411 cdc6 cell division co 99.2 1.1E-09 2.3E-14 122.5 23.7 238 157-411 31-302 (394)
24 KOG4237 Extracellular matrix p 99.2 2E-12 4.3E-17 131.8 -1.5 295 499-819 52-355 (498)
25 KOG4237 Extracellular matrix p 99.2 2.1E-12 4.5E-17 131.7 -3.1 286 522-843 53-355 (498)
26 TIGR02928 orc1/cdc6 family rep 99.1 1.8E-08 4E-13 111.3 27.9 291 157-468 16-350 (365)
27 TIGR03015 pepcterm_ATPase puta 99.1 6.4E-09 1.4E-13 109.7 22.7 180 174-361 43-242 (269)
28 PF01637 Arch_ATPase: Archaeal 99.1 7.1E-10 1.5E-14 114.4 12.5 192 158-356 1-233 (234)
29 COG2909 MalT ATP-dependent tra 99.1 2.1E-08 4.6E-13 113.3 22.9 299 149-488 13-339 (894)
30 TIGR00635 ruvB Holliday juncti 99.0 4.1E-09 9E-14 113.2 15.1 268 158-468 6-289 (305)
31 PRK00080 ruvB Holliday junctio 99.0 6E-09 1.3E-13 112.6 15.3 267 158-468 27-310 (328)
32 cd00116 LRR_RI Leucine-rich re 99.0 3.5E-10 7.6E-15 122.8 4.9 85 535-619 20-119 (319)
33 cd00116 LRR_RI Leucine-rich re 99.0 3.8E-10 8.3E-15 122.5 4.3 228 543-784 3-261 (319)
34 PF05729 NACHT: NACHT domain 99.0 4.5E-09 9.8E-14 101.9 11.5 142 175-325 1-163 (166)
35 KOG4341 F-box protein containi 99.0 3.3E-11 7E-16 124.2 -3.8 293 538-852 138-444 (483)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.5E-14 104.2 5.6 130 509-641 13-148 (175)
37 PRK06893 DNA replication initi 98.8 1.7E-08 3.7E-13 102.7 9.7 152 174-358 39-204 (229)
38 PF14580 LRR_9: Leucine-rich r 98.8 1.3E-08 2.7E-13 97.1 6.3 120 497-617 23-149 (175)
39 COG2256 MGS1 ATPase related to 98.7 4.2E-07 9.1E-12 94.5 17.2 216 158-405 32-266 (436)
40 KOG0532 Leucine-rich repeat (L 98.7 4.1E-10 9E-15 120.3 -4.9 121 517-641 77-197 (722)
41 PTZ00112 origin recognition co 98.6 1.6E-06 3.5E-11 99.1 18.1 202 158-361 757-986 (1164)
42 PRK13342 recombination factor 98.6 1.9E-06 4.1E-11 96.1 17.3 171 158-360 14-199 (413)
43 TIGR03420 DnaA_homol_Hda DnaA 98.5 4.4E-07 9.6E-12 92.9 11.3 165 161-358 22-202 (226)
44 KOG3207 Beta-tubulin folding c 98.5 2.9E-08 6.3E-13 103.4 2.2 107 535-641 118-230 (505)
45 KOG4341 F-box protein containi 98.5 6.5E-09 1.4E-13 107.5 -2.6 296 516-840 139-458 (483)
46 KOG2120 SCF ubiquitin ligase, 98.5 8.8E-09 1.9E-13 101.7 -1.9 17 668-684 256-272 (419)
47 KOG0532 Leucine-rich repeat (L 98.5 8.5E-09 1.8E-13 110.5 -2.6 127 510-641 116-242 (722)
48 KOG3207 Beta-tubulin folding c 98.5 2.1E-08 4.5E-13 104.5 -0.2 159 513-686 119-285 (505)
49 PF13173 AAA_14: AAA domain 98.5 2.7E-07 5.9E-12 84.6 7.0 119 175-317 3-127 (128)
50 PRK07003 DNA polymerase III su 98.5 5.5E-06 1.2E-10 94.5 18.7 188 158-357 18-221 (830)
51 PRK04195 replication factor C 98.5 8.8E-06 1.9E-10 92.7 20.6 174 158-361 16-206 (482)
52 KOG1259 Nischarin, modulator o 98.5 2.8E-08 6.1E-13 98.0 -0.4 128 511-642 280-408 (490)
53 PF13855 LRR_8: Leucine rich r 98.5 2.2E-07 4.7E-12 72.6 4.7 58 539-596 2-60 (61)
54 PRK05564 DNA polymerase III su 98.4 4.6E-06 1E-10 89.6 16.1 173 158-357 6-190 (313)
55 PF05496 RuvB_N: Holliday junc 98.4 3.2E-06 7E-11 82.3 13.0 169 158-360 26-224 (233)
56 cd01128 rho_factor Transcripti 98.4 4.7E-07 1E-11 92.2 7.3 89 174-267 16-114 (249)
57 KOG2028 ATPase related to the 98.4 2.6E-06 5.7E-11 86.8 12.0 142 158-325 146-294 (554)
58 COG3899 Predicted ATPase [Gene 98.4 6.6E-06 1.4E-10 99.0 17.8 263 158-432 2-333 (849)
59 TIGR02903 spore_lon_C ATP-depe 98.4 4.6E-05 1E-09 88.7 23.3 197 158-360 156-398 (615)
60 KOG2120 SCF ubiquitin ligase, 98.4 1.5E-08 3.4E-13 100.0 -4.5 142 666-820 228-373 (419)
61 PRK08727 hypothetical protein; 98.4 3.2E-06 6.9E-11 86.3 11.6 148 174-354 41-201 (233)
62 PRK14961 DNA polymerase III su 98.3 1E-05 2.2E-10 88.5 16.1 186 158-356 18-219 (363)
63 PF13401 AAA_22: AAA domain; P 98.3 1E-06 2.2E-11 81.5 7.0 115 175-294 5-125 (131)
64 PRK14960 DNA polymerase III su 98.3 5.9E-06 1.3E-10 93.3 14.3 186 158-356 17-218 (702)
65 COG1474 CDC6 Cdc6-related prot 98.3 4.1E-05 8.9E-10 82.8 19.9 196 158-357 19-238 (366)
66 PRK14949 DNA polymerase III su 98.3 5.6E-06 1.2E-10 96.4 14.1 175 158-357 18-220 (944)
67 PRK14963 DNA polymerase III su 98.3 1.2E-05 2.6E-10 90.8 16.1 187 158-355 16-215 (504)
68 PRK12402 replication factor C 98.3 7.8E-06 1.7E-10 89.4 14.3 189 158-356 17-225 (337)
69 cd00009 AAA The AAA+ (ATPases 98.3 3.4E-06 7.5E-11 79.7 10.1 121 159-296 1-131 (151)
70 KOG1259 Nischarin, modulator o 98.3 3.4E-07 7.4E-12 90.6 2.7 109 560-688 282-390 (490)
71 COG3903 Predicted ATPase [Gene 98.3 1.4E-06 3.1E-11 91.4 7.5 291 174-489 14-316 (414)
72 COG4886 Leucine-rich repeat (L 98.3 4.3E-07 9.4E-12 101.6 3.8 122 515-639 116-238 (394)
73 PRK09376 rho transcription ter 98.3 2E-06 4.4E-11 91.0 8.2 88 174-266 169-266 (416)
74 PRK12323 DNA polymerase III su 98.3 9.9E-06 2.1E-10 91.3 13.8 189 158-357 18-225 (700)
75 TIGR01242 26Sp45 26S proteasom 98.3 7.5E-06 1.6E-10 89.9 12.8 165 158-351 124-328 (364)
76 PLN03150 hypothetical protein; 98.3 2.3E-06 4.9E-11 100.4 9.0 104 539-642 419-524 (623)
77 PRK06645 DNA polymerase III su 98.2 2.2E-05 4.8E-10 88.2 16.2 189 158-355 23-227 (507)
78 PRK09087 hypothetical protein; 98.2 6E-06 1.3E-10 83.4 10.5 139 174-357 44-195 (226)
79 COG4886 Leucine-rich repeat (L 98.2 8.8E-07 1.9E-11 99.1 4.7 197 519-767 97-294 (394)
80 PLN03150 hypothetical protein; 98.2 2.7E-06 5.9E-11 99.8 8.9 110 516-625 419-532 (623)
81 PF13191 AAA_16: AAA ATPase do 98.2 3.6E-06 7.8E-11 83.1 8.2 41 158-198 2-48 (185)
82 PRK14957 DNA polymerase III su 98.2 2.6E-05 5.5E-10 88.3 15.2 176 158-357 18-221 (546)
83 PRK14962 DNA polymerase III su 98.2 2.5E-05 5.5E-10 87.4 15.1 181 158-361 16-223 (472)
84 PRK08084 DNA replication initi 98.2 1.2E-05 2.5E-10 82.3 11.3 151 174-357 45-209 (235)
85 PTZ00202 tuzin; Provisional 98.2 1.7E-05 3.7E-10 84.4 12.6 153 157-324 263-433 (550)
86 PLN03025 replication factor C 98.2 2.4E-05 5.3E-10 84.2 14.1 175 158-354 15-197 (319)
87 PRK00440 rfc replication facto 98.2 3.9E-05 8.5E-10 83.2 15.9 175 158-356 19-202 (319)
88 PRK07471 DNA polymerase III su 98.2 5.3E-05 1.2E-09 82.1 16.5 192 158-358 21-239 (365)
89 KOG1909 Ran GTPase-activating 98.2 5.7E-07 1.2E-11 91.5 1.0 85 535-619 27-131 (382)
90 PRK13341 recombination factor 98.1 2E-05 4.4E-10 92.5 13.8 165 158-353 30-213 (725)
91 PRK14956 DNA polymerase III su 98.1 2.4E-05 5.2E-10 86.0 13.5 186 158-356 20-221 (484)
92 PRK05642 DNA replication initi 98.1 1.1E-05 2.3E-10 82.4 10.0 151 175-358 46-209 (234)
93 PF13855 LRR_8: Leucine rich r 98.1 3.1E-06 6.8E-11 66.0 4.6 60 515-574 1-61 (61)
94 PRK07994 DNA polymerase III su 98.1 2.3E-05 5.1E-10 89.9 13.2 187 158-357 18-220 (647)
95 PRK07940 DNA polymerase III su 98.1 5.6E-05 1.2E-09 82.6 15.3 166 158-357 7-213 (394)
96 PRK08691 DNA polymerase III su 98.1 4.5E-05 9.8E-10 87.2 14.4 172 158-357 18-220 (709)
97 TIGR02397 dnaX_nterm DNA polym 98.1 8.6E-05 1.9E-09 81.8 16.5 177 158-358 16-219 (355)
98 PRK05896 DNA polymerase III su 98.1 3.5E-05 7.6E-10 87.2 13.3 188 158-358 18-222 (605)
99 PRK14958 DNA polymerase III su 98.1 4.4E-05 9.5E-10 86.5 14.2 176 158-356 18-219 (509)
100 TIGR00767 rho transcription te 98.1 1.4E-05 3E-10 85.3 9.5 91 174-266 168-265 (415)
101 PRK09112 DNA polymerase III su 98.1 4.6E-05 9.9E-10 82.1 13.5 191 158-358 25-241 (351)
102 PRK14951 DNA polymerase III su 98.0 5.9E-05 1.3E-09 86.6 14.6 191 158-357 18-225 (618)
103 PRK14964 DNA polymerase III su 98.0 9E-05 2E-09 82.6 15.5 175 158-355 15-215 (491)
104 PRK14087 dnaA chromosomal repl 98.0 2.6E-05 5.6E-10 87.3 11.3 167 175-359 142-321 (450)
105 PRK03992 proteasome-activating 98.0 7.9E-05 1.7E-09 82.2 14.3 165 158-350 133-336 (389)
106 PRK11331 5-methylcytosine-spec 98.0 3.2E-05 6.9E-10 84.0 10.9 104 158-267 177-283 (459)
107 TIGR02880 cbbX_cfxQ probable R 98.0 4.5E-05 9.8E-10 80.1 11.7 150 158-327 24-210 (284)
108 TIGR00678 holB DNA polymerase 98.0 0.00013 2.7E-09 72.1 14.3 150 174-353 14-187 (188)
109 PF00308 Bac_DnaA: Bacterial d 98.0 3.2E-05 6.9E-10 77.9 9.9 157 174-355 34-206 (219)
110 TIGR02881 spore_V_K stage V sp 98.0 4.5E-05 9.8E-10 79.5 11.4 148 158-327 8-193 (261)
111 PF12799 LRR_4: Leucine Rich r 98.0 8.7E-06 1.9E-10 58.0 4.1 39 563-601 2-40 (44)
112 PRK14969 DNA polymerase III su 98.0 8.5E-05 1.8E-09 84.8 14.4 174 158-354 18-217 (527)
113 PRK08903 DnaA regulatory inact 98.0 4.4E-05 9.5E-10 78.0 10.8 151 174-361 42-203 (227)
114 PRK09111 DNA polymerase III su 98.0 0.00011 2.5E-09 84.4 15.1 190 158-357 26-233 (598)
115 CHL00181 cbbX CbbX; Provisiona 98.0 0.0001 2.2E-09 77.4 13.4 150 158-327 25-211 (287)
116 PRK07764 DNA polymerase III su 98.0 0.00012 2.7E-09 87.1 15.4 185 158-355 17-219 (824)
117 PRK14955 DNA polymerase III su 97.9 8.9E-05 1.9E-09 82.2 12.8 193 158-356 18-227 (397)
118 PRK15386 type III secretion pr 97.9 3.9E-05 8.4E-10 82.4 9.5 63 559-626 49-112 (426)
119 PRK14959 DNA polymerase III su 97.9 0.00012 2.6E-09 83.4 13.8 191 158-361 18-225 (624)
120 PRK14970 DNA polymerase III su 97.9 0.00022 4.7E-09 78.7 15.6 174 158-354 19-206 (367)
121 PRK14952 DNA polymerase III su 97.9 0.00019 4.2E-09 82.1 15.4 189 158-359 15-222 (584)
122 KOG1909 Ran GTPase-activating 97.9 7.5E-06 1.6E-10 83.5 3.4 86 558-643 26-130 (382)
123 PTZ00361 26 proteosome regulat 97.9 0.0001 2.2E-09 81.3 12.4 148 158-328 185-370 (438)
124 PRK06620 hypothetical protein; 97.9 6.9E-05 1.5E-09 75.1 9.9 133 175-354 45-186 (214)
125 KOG1859 Leucine-rich repeat pr 97.9 9.5E-07 2.1E-11 97.6 -3.7 179 510-709 104-290 (1096)
126 KOG2982 Uncharacterized conser 97.9 2.7E-06 5.9E-11 84.5 -0.3 17 748-764 247-263 (418)
127 PRK07133 DNA polymerase III su 97.8 0.00025 5.4E-09 82.2 15.0 181 158-356 20-218 (725)
128 PRK14088 dnaA chromosomal repl 97.8 0.00012 2.5E-09 82.0 12.1 158 175-354 131-302 (440)
129 PRK06305 DNA polymerase III su 97.8 0.00033 7.1E-09 78.5 15.5 172 158-353 19-218 (451)
130 KOG2227 Pre-initiation complex 97.8 0.00078 1.7E-08 72.0 17.1 198 158-361 152-376 (529)
131 PRK14950 DNA polymerase III su 97.8 0.00036 7.9E-09 81.2 16.3 189 158-358 18-222 (585)
132 PRK14953 DNA polymerase III su 97.8 0.00039 8.5E-09 78.4 16.0 173 158-358 18-221 (486)
133 PRK14971 DNA polymerase III su 97.8 0.00037 8E-09 80.9 16.1 175 158-356 19-221 (614)
134 KOG4579 Leucine-rich repeat (L 97.8 3.5E-06 7.5E-11 74.1 -0.4 111 516-627 28-141 (177)
135 PTZ00454 26S protease regulato 97.8 0.00026 5.7E-09 77.6 14.0 166 158-350 147-350 (398)
136 COG2255 RuvB Holliday junction 97.8 0.00058 1.2E-08 68.3 14.7 166 158-357 28-223 (332)
137 PRK14954 DNA polymerase III su 97.8 0.00035 7.5E-09 80.7 15.4 189 158-352 18-223 (620)
138 PRK08451 DNA polymerase III su 97.8 0.0005 1.1E-08 77.5 15.7 177 158-357 16-218 (535)
139 TIGR00362 DnaA chromosomal rep 97.8 0.00022 4.8E-09 79.7 13.0 159 175-355 137-308 (405)
140 PF12799 LRR_4: Leucine Rich r 97.8 3.8E-05 8.2E-10 54.8 4.3 41 585-626 1-41 (44)
141 PRK15386 type III secretion pr 97.8 7.9E-05 1.7E-09 80.1 8.6 143 664-844 44-187 (426)
142 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00036 7.7E-09 84.4 15.2 172 158-349 189-388 (852)
143 KOG2982 Uncharacterized conser 97.7 2.1E-05 4.5E-10 78.4 3.6 83 536-618 69-156 (418)
144 PRK12422 chromosomal replicati 97.7 0.00024 5.2E-09 79.3 12.4 152 175-350 142-306 (445)
145 PRK00149 dnaA chromosomal repl 97.7 0.00019 4.2E-09 81.2 11.8 159 175-355 149-320 (450)
146 PF05621 TniB: Bacterial TniB 97.7 0.00097 2.1E-08 68.6 15.3 190 164-356 45-260 (302)
147 PRK14948 DNA polymerase III su 97.7 0.0008 1.7E-08 78.2 16.4 190 158-358 18-223 (620)
148 PRK14086 dnaA chromosomal repl 97.7 0.00067 1.4E-08 77.1 15.2 158 175-354 315-485 (617)
149 KOG2543 Origin recognition com 97.7 0.00024 5.2E-09 73.8 10.4 162 157-324 7-192 (438)
150 KOG0531 Protein phosphatase 1, 97.7 4.6E-06 1E-10 93.4 -2.5 81 535-618 92-172 (414)
151 KOG3665 ZYG-1-like serine/thre 97.7 2.2E-05 4.7E-10 91.8 2.8 104 515-619 122-231 (699)
152 PF14516 AAA_35: AAA-like doma 97.7 0.0033 7.1E-08 67.9 19.2 196 158-364 13-246 (331)
153 TIGR03689 pup_AAA proteasome A 97.6 0.00044 9.6E-09 77.5 12.5 152 158-326 184-379 (512)
154 PHA02544 44 clamp loader, smal 97.6 0.00024 5.2E-09 76.8 10.2 140 158-323 23-171 (316)
155 PRK06647 DNA polymerase III su 97.6 0.0013 2.7E-08 75.6 16.2 187 158-357 18-220 (563)
156 COG0466 Lon ATP-dependent Lon 97.6 0.0022 4.8E-08 72.3 17.5 153 158-325 325-508 (782)
157 PRK05707 DNA polymerase III su 97.6 0.00096 2.1E-08 71.3 14.1 95 255-357 105-203 (328)
158 KOG0531 Protein phosphatase 1, 97.6 8E-06 1.7E-10 91.5 -2.2 213 536-782 70-286 (414)
159 KOG1859 Leucine-rich repeat pr 97.6 2.3E-06 4.9E-11 94.7 -6.4 125 513-642 162-288 (1096)
160 KOG0989 Replication factor C, 97.6 0.00035 7.5E-09 70.6 9.4 175 158-351 38-224 (346)
161 PRK14965 DNA polymerase III su 97.6 0.0009 1.9E-08 77.6 14.3 187 158-357 18-221 (576)
162 PRK08116 hypothetical protein; 97.6 0.0001 2.2E-09 76.6 5.9 102 175-294 115-220 (268)
163 TIGR00763 lon ATP-dependent pr 97.5 0.0026 5.6E-08 76.9 18.3 41 158-198 322-371 (775)
164 TIGR02639 ClpA ATP-dependent C 97.5 0.00029 6.3E-09 84.5 10.1 150 158-325 184-358 (731)
165 PRK05563 DNA polymerase III su 97.5 0.002 4.2E-08 74.4 15.7 185 158-355 18-218 (559)
166 TIGR01241 FtsH_fam ATP-depende 97.5 0.0018 4E-08 74.2 15.3 172 158-356 57-266 (495)
167 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0016 3.4E-08 71.7 13.4 182 158-362 192-411 (802)
168 KOG2004 Mitochondrial ATP-depe 97.5 0.0077 1.7E-07 67.8 18.7 149 158-325 413-596 (906)
169 PRK08118 topology modulation p 97.4 8.5E-05 1.8E-09 71.4 3.2 36 175-210 2-37 (167)
170 smart00382 AAA ATPases associa 97.4 0.00042 9.2E-09 64.6 8.1 88 175-269 3-91 (148)
171 KOG1644 U2-associated snRNP A' 97.4 0.00022 4.8E-09 67.5 5.6 101 516-617 43-149 (233)
172 CHL00095 clpC Clp protease ATP 97.4 0.00051 1.1E-08 83.4 10.3 150 158-324 181-353 (821)
173 PF00004 AAA: ATPase family as 97.4 0.00044 9.5E-09 63.7 7.5 22 177-198 1-22 (132)
174 KOG4579 Leucine-rich repeat (L 97.4 2.2E-05 4.8E-10 69.1 -1.2 90 516-606 54-144 (177)
175 KOG3665 ZYG-1-like serine/thre 97.4 7.5E-05 1.6E-09 87.4 2.7 138 537-684 121-262 (699)
176 COG1222 RPT1 ATP-dependent 26S 97.4 0.0021 4.5E-08 66.6 12.5 190 158-376 153-391 (406)
177 CHL00176 ftsH cell division pr 97.4 0.0032 6.9E-08 73.3 15.4 165 158-349 185-386 (638)
178 PF05673 DUF815: Protein of un 97.3 0.0052 1.1E-07 61.3 14.1 41 158-198 29-76 (249)
179 KOG1947 Leucine rich repeat pr 97.3 6.2E-05 1.3E-09 86.9 0.7 84 536-619 186-280 (482)
180 COG0593 DnaA ATPase involved i 97.3 0.0015 3.3E-08 70.5 11.0 138 174-333 113-265 (408)
181 PRK07399 DNA polymerase III su 97.3 0.0062 1.3E-07 64.8 15.5 190 158-357 6-221 (314)
182 PRK10787 DNA-binding ATP-depen 97.3 0.0056 1.2E-07 73.3 16.5 41 158-198 324-373 (784)
183 PF04665 Pox_A32: Poxvirus A32 97.3 0.00082 1.8E-08 67.4 8.0 35 176-213 15-49 (241)
184 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0019 4.2E-08 78.7 12.7 149 158-325 175-349 (852)
185 PRK10865 protein disaggregatio 97.3 0.0017 3.6E-08 78.9 12.0 41 158-198 180-223 (857)
186 PRK11034 clpA ATP-dependent Cl 97.3 0.0025 5.3E-08 75.7 13.0 151 158-325 188-362 (758)
187 COG3267 ExeA Type II secretory 97.2 0.016 3.4E-07 57.6 15.9 180 174-358 51-246 (269)
188 COG1373 Predicted ATPase (AAA+ 97.2 0.0048 1E-07 68.1 13.8 134 160-321 21-163 (398)
189 PRK12377 putative replication 97.2 0.00089 1.9E-08 68.3 7.2 73 174-266 101-173 (248)
190 KOG0741 AAA+-type ATPase [Post 97.2 0.0043 9.3E-08 67.2 12.3 143 174-347 538-704 (744)
191 TIGR00602 rad24 checkpoint pro 97.2 0.0017 3.6E-08 75.0 10.0 41 158-198 86-134 (637)
192 PRK06835 DNA replication prote 97.1 0.0048 1E-07 65.9 12.7 38 174-214 183-220 (329)
193 PF13177 DNA_pol3_delta2: DNA 97.1 0.0041 9E-08 59.4 10.8 134 160-313 1-162 (162)
194 KOG2123 Uncharacterized conser 97.1 4.4E-05 9.5E-10 75.4 -2.8 103 536-641 17-125 (388)
195 PRK08058 DNA polymerase III su 97.1 0.011 2.4E-07 63.8 15.2 142 158-324 7-181 (329)
196 PRK07261 topology modulation p 97.1 0.0015 3.3E-08 63.1 7.7 67 176-267 2-68 (171)
197 TIGR02640 gas_vesic_GvpN gas v 97.1 0.0098 2.1E-07 61.9 13.8 56 162-223 8-64 (262)
198 PRK06871 DNA polymerase III su 97.0 0.018 3.9E-07 61.2 15.7 170 166-355 12-201 (325)
199 PRK08769 DNA polymerase III su 97.0 0.017 3.8E-07 61.2 15.4 177 164-358 12-209 (319)
200 PRK12608 transcription termina 97.0 0.0042 9E-08 66.3 10.3 100 165-266 120-230 (380)
201 KOG1644 U2-associated snRNP A' 97.0 0.0011 2.4E-08 62.8 5.4 101 538-641 42-148 (233)
202 COG0542 clpA ATP-binding subun 96.9 0.021 4.5E-07 66.7 16.0 99 158-267 493-604 (786)
203 TIGR01243 CDC48 AAA family ATP 96.9 0.0053 1.2E-07 74.0 12.0 168 158-352 180-382 (733)
204 PRK06921 hypothetical protein; 96.9 0.00063 1.4E-08 70.6 3.6 38 174-213 117-154 (266)
205 PRK10536 hypothetical protein; 96.9 0.0041 8.9E-08 62.8 9.0 41 158-198 57-98 (262)
206 PRK06090 DNA polymerase III su 96.9 0.029 6.3E-07 59.5 15.8 91 255-357 107-201 (319)
207 PRK06526 transposase; Provisio 96.9 0.00092 2E-08 68.7 4.4 25 174-198 98-122 (254)
208 TIGR01243 CDC48 AAA family ATP 96.9 0.015 3.2E-07 70.3 15.3 167 158-351 455-657 (733)
209 PRK07993 DNA polymerase III su 96.9 0.022 4.8E-07 61.2 14.8 173 165-356 11-203 (334)
210 PRK08181 transposase; Validate 96.9 0.0014 3.1E-08 67.7 5.5 76 170-266 101-177 (269)
211 PRK09183 transposase/IS protei 96.9 0.0017 3.8E-08 67.1 6.1 25 174-198 102-126 (259)
212 CHL00195 ycf46 Ycf46; Provisio 96.8 0.014 3E-07 65.8 12.9 146 158-327 230-407 (489)
213 PF13207 AAA_17: AAA domain; P 96.8 0.0011 2.3E-08 60.1 3.4 23 176-198 1-23 (121)
214 KOG0730 AAA+-type ATPase [Post 96.8 0.016 3.5E-07 64.9 12.9 159 159-341 437-631 (693)
215 KOG1947 Leucine rich repeat pr 96.8 0.0002 4.2E-09 82.7 -2.1 42 809-850 400-443 (482)
216 PF00448 SRP54: SRP54-type pro 96.7 0.0045 9.9E-08 61.0 7.6 89 175-266 2-93 (196)
217 PRK12727 flagellar biosynthesi 96.7 0.04 8.7E-07 61.6 15.4 88 174-266 350-438 (559)
218 KOG1514 Origin recognition com 96.7 0.055 1.2E-06 61.3 16.3 195 158-359 398-623 (767)
219 PF02562 PhoH: PhoH-like prote 96.7 0.0039 8.4E-08 61.2 6.4 124 163-294 7-155 (205)
220 PRK06964 DNA polymerase III su 96.7 0.061 1.3E-06 57.7 16.0 92 255-358 131-226 (342)
221 KOG2739 Leucine-rich acidic nu 96.6 0.00076 1.7E-08 66.9 1.4 106 535-642 40-152 (260)
222 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0027 5.8E-08 67.5 5.4 41 158-198 53-102 (361)
223 PF01695 IstB_IS21: IstB-like 96.6 0.0015 3.2E-08 63.4 3.0 73 174-267 47-119 (178)
224 PF10443 RNA12: RNA12 protein; 96.6 0.044 9.6E-07 59.2 14.3 197 161-369 1-290 (431)
225 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0041 8.8E-08 75.4 7.3 41 158-198 568-620 (852)
226 PRK09361 radB DNA repair and r 96.5 0.006 1.3E-07 62.1 7.4 46 174-223 23-68 (225)
227 KOG2228 Origin recognition com 96.5 0.019 4.2E-07 59.0 10.5 165 158-325 26-219 (408)
228 KOG0652 26S proteasome regulat 96.5 0.056 1.2E-06 53.3 13.2 51 148-198 161-229 (424)
229 PRK04296 thymidine kinase; Pro 96.5 0.0029 6.3E-08 62.3 4.6 113 175-296 3-117 (190)
230 PRK04132 replication factor C 96.5 0.038 8.3E-07 65.9 14.3 153 182-357 574-731 (846)
231 KOG0731 AAA+-type ATPase conta 96.5 0.031 6.7E-07 64.8 13.0 170 158-355 313-522 (774)
232 TIGR02237 recomb_radB DNA repa 96.5 0.011 2.4E-07 59.4 8.7 47 174-224 12-58 (209)
233 TIGR02639 ClpA ATP-dependent C 96.5 0.013 2.8E-07 70.6 10.6 41 158-198 456-508 (731)
234 TIGR02012 tigrfam_recA protein 96.4 0.0069 1.5E-07 64.0 7.1 85 174-266 55-143 (321)
235 COG2812 DnaX DNA polymerase II 96.4 0.014 3E-07 65.3 9.7 180 158-352 18-215 (515)
236 cd00983 recA RecA is a bacter 96.4 0.0071 1.5E-07 63.9 7.0 85 174-266 55-143 (325)
237 PF07728 AAA_5: AAA domain (dy 96.4 0.0032 6.9E-08 58.6 4.0 43 177-225 2-44 (139)
238 PRK06762 hypothetical protein; 96.4 0.026 5.5E-07 54.4 10.4 24 175-198 3-26 (166)
239 cd01393 recA_like RecA is a b 96.4 0.018 4E-07 58.6 9.9 92 174-266 19-124 (226)
240 KOG0743 AAA+-type ATPase [Post 96.4 0.45 9.7E-06 51.6 20.2 151 174-364 235-417 (457)
241 TIGR03346 chaperone_ClpB ATP-d 96.4 0.012 2.6E-07 71.9 9.8 41 158-198 567-619 (852)
242 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.0097 2.1E-07 61.1 7.8 50 174-224 19-72 (235)
243 PRK10865 protein disaggregatio 96.4 0.022 4.7E-07 69.5 11.7 41 158-198 570-622 (857)
244 KOG0991 Replication factor C, 96.4 0.0067 1.5E-07 58.7 5.8 41 158-198 29-72 (333)
245 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.011 2.3E-07 55.5 6.9 117 175-296 3-139 (159)
246 PRK00771 signal recognition pa 96.3 0.09 2E-06 58.4 15.3 88 175-266 96-185 (437)
247 KOG0735 AAA+-type ATPase [Post 96.3 0.0089 1.9E-07 67.2 7.2 72 174-266 431-504 (952)
248 PF08423 Rad51: Rad51; InterP 96.3 0.014 3.1E-07 60.3 8.5 57 174-231 38-97 (256)
249 PRK09354 recA recombinase A; P 96.3 0.01 2.2E-07 63.2 7.4 85 174-266 60-148 (349)
250 CHL00095 clpC Clp protease ATP 96.3 0.0073 1.6E-07 73.6 7.2 99 158-267 511-622 (821)
251 cd01394 radB RadB. The archaea 96.3 0.018 3.8E-07 58.4 8.9 42 174-218 19-60 (218)
252 PRK10867 signal recognition pa 96.3 0.097 2.1E-06 58.0 15.1 24 175-198 101-124 (433)
253 PRK05541 adenylylsulfate kinas 96.3 0.0087 1.9E-07 58.3 6.4 34 175-211 8-41 (176)
254 PF14532 Sigma54_activ_2: Sigm 96.3 0.0042 9.2E-08 57.7 3.9 40 159-198 1-45 (138)
255 PRK08699 DNA polymerase III su 96.2 0.04 8.6E-07 59.0 11.7 25 174-198 21-45 (325)
256 KOG1969 DNA replication checkp 96.2 0.0099 2.1E-07 67.2 7.2 72 174-268 326-399 (877)
257 PRK10733 hflB ATP-dependent me 96.2 0.072 1.6E-06 62.9 14.7 148 158-328 154-338 (644)
258 PRK07952 DNA replication prote 96.2 0.026 5.5E-07 57.6 9.4 74 175-267 100-173 (244)
259 TIGR01425 SRP54_euk signal rec 96.1 0.15 3.1E-06 56.3 15.3 24 175-198 101-124 (429)
260 cd01120 RecA-like_NTPases RecA 96.1 0.027 5.8E-07 53.9 8.9 40 176-218 1-40 (165)
261 COG1618 Predicted nucleotide k 96.1 0.0068 1.5E-07 55.5 4.1 24 175-198 6-29 (179)
262 cd01131 PilT Pilus retraction 96.0 0.0082 1.8E-07 59.6 5.0 107 175-297 2-111 (198)
263 TIGR02238 recomb_DMC1 meiotic 96.0 0.029 6.2E-07 59.7 9.3 59 174-233 96-157 (313)
264 cd01133 F1-ATPase_beta F1 ATP 96.0 0.023 4.9E-07 58.4 8.2 92 174-267 69-174 (274)
265 PRK06696 uridine kinase; Valid 96.0 0.0076 1.7E-07 61.2 4.8 38 161-198 3-46 (223)
266 COG5238 RNA1 Ran GTPase-activa 96.0 0.016 3.5E-07 57.6 6.6 88 537-625 29-136 (388)
267 KOG0728 26S proteasome regulat 96.0 0.14 3E-06 50.3 12.7 160 158-344 148-350 (404)
268 PRK08939 primosomal protein Dn 96.0 0.026 5.6E-07 59.9 8.7 113 160-293 135-259 (306)
269 KOG0744 AAA+-type ATPase [Post 96.0 0.02 4.3E-07 58.5 7.2 80 174-266 177-260 (423)
270 COG0470 HolB ATPase involved i 96.0 0.029 6.4E-07 60.8 9.4 136 158-312 3-168 (325)
271 PLN00020 ribulose bisphosphate 95.9 0.014 2.9E-07 61.8 6.1 25 174-198 148-172 (413)
272 PF00485 PRK: Phosphoribulokin 95.9 0.053 1.2E-06 53.7 10.1 82 176-259 1-86 (194)
273 cd03115 SRP The signal recogni 95.9 0.031 6.8E-07 54.2 8.3 23 176-198 2-24 (173)
274 PLN03187 meiotic recombination 95.9 0.049 1.1E-06 58.4 10.2 59 174-233 126-187 (344)
275 PRK15455 PrkA family serine pr 95.9 0.008 1.7E-07 67.2 4.3 41 158-198 78-127 (644)
276 COG0464 SpoVK ATPases of the A 95.8 0.12 2.5E-06 59.7 13.9 148 158-328 244-426 (494)
277 cd03238 ABC_UvrA The excision 95.8 0.03 6.4E-07 54.1 7.5 124 174-309 21-161 (176)
278 PRK14722 flhF flagellar biosyn 95.8 0.031 6.7E-07 60.4 8.4 88 174-266 137-225 (374)
279 PF13238 AAA_18: AAA domain; P 95.8 0.0074 1.6E-07 55.2 3.2 22 177-198 1-22 (129)
280 TIGR03499 FlhF flagellar biosy 95.8 0.034 7.4E-07 58.4 8.5 86 175-265 195-281 (282)
281 TIGR00959 ffh signal recogniti 95.8 0.059 1.3E-06 59.7 10.6 91 174-266 99-192 (428)
282 COG0572 Udk Uridine kinase [Nu 95.8 0.025 5.4E-07 55.5 6.8 24 175-198 9-32 (218)
283 COG1102 Cmk Cytidylate kinase 95.8 0.022 4.7E-07 52.3 5.9 44 176-233 2-45 (179)
284 COG1484 DnaC DNA replication p 95.8 0.027 5.9E-07 58.0 7.5 74 174-267 105-178 (254)
285 KOG0733 Nuclear AAA ATPase (VC 95.7 0.16 3.5E-06 56.6 13.3 152 174-351 545-718 (802)
286 PRK13531 regulatory ATPase Rav 95.7 0.014 3.1E-07 64.4 5.4 41 158-198 22-63 (498)
287 cd03247 ABCC_cytochrome_bd The 95.7 0.038 8.3E-07 53.8 7.9 126 174-309 28-169 (178)
288 KOG0739 AAA+-type ATPase [Post 95.7 1.4 3E-05 44.9 18.4 86 158-267 135-236 (439)
289 KOG2739 Leucine-rich acidic nu 95.6 0.0069 1.5E-07 60.3 2.4 105 514-619 42-154 (260)
290 PRK11889 flhF flagellar biosyn 95.6 0.083 1.8E-06 56.8 10.5 87 174-266 241-330 (436)
291 cd02019 NK Nucleoside/nucleoti 95.6 0.01 2.2E-07 47.4 2.8 23 176-198 1-23 (69)
292 PRK04301 radA DNA repair and r 95.6 0.054 1.2E-06 58.2 9.3 57 174-231 102-161 (317)
293 PRK06067 flagellar accessory p 95.6 0.061 1.3E-06 55.1 9.3 87 174-266 25-130 (234)
294 PF13306 LRR_5: Leucine rich r 95.6 0.053 1.2E-06 49.5 8.0 100 535-640 9-110 (129)
295 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.065 1.4E-06 54.9 9.3 48 174-226 21-68 (237)
296 cd03216 ABC_Carb_Monos_I This 95.5 0.016 3.5E-07 55.5 4.5 114 174-297 26-144 (163)
297 cd01121 Sms Sms (bacterial rad 95.5 0.04 8.6E-07 60.0 8.0 83 174-265 82-167 (372)
298 TIGR02239 recomb_RAD51 DNA rep 95.5 0.058 1.2E-06 57.6 9.0 58 174-232 96-156 (316)
299 COG0541 Ffh Signal recognition 95.5 0.57 1.2E-05 50.7 16.1 56 175-233 101-157 (451)
300 COG1223 Predicted ATPase (AAA+ 95.5 0.13 2.8E-06 51.1 10.4 165 158-350 123-318 (368)
301 COG2607 Predicted ATPase (AAA+ 95.5 0.052 1.1E-06 53.3 7.6 41 158-198 62-109 (287)
302 PRK08233 hypothetical protein; 95.4 0.012 2.5E-07 57.8 3.3 24 175-198 4-27 (182)
303 COG4608 AppF ABC-type oligopep 95.4 0.057 1.2E-06 54.6 8.1 123 174-302 39-177 (268)
304 PRK11034 clpA ATP-dependent Cl 95.4 0.045 9.7E-07 65.2 8.6 41 158-198 460-512 (758)
305 KOG3864 Uncharacterized conser 95.4 0.0022 4.7E-08 61.1 -1.8 68 718-786 120-189 (221)
306 cd03228 ABCC_MRP_Like The MRP 95.4 0.046 1E-06 52.8 7.3 25 174-198 28-52 (171)
307 PRK07667 uridine kinase; Provi 95.4 0.015 3.3E-07 57.4 4.0 33 166-198 4-41 (193)
308 PF07693 KAP_NTPase: KAP famil 95.4 0.17 3.8E-06 54.8 12.7 35 164-198 4-44 (325)
309 PF00006 ATP-synt_ab: ATP synt 95.4 0.085 1.8E-06 52.6 9.2 88 174-266 15-115 (215)
310 KOG0734 AAA+-type ATPase conta 95.3 0.039 8.5E-07 60.1 6.9 41 158-198 306-361 (752)
311 PF00560 LRR_1: Leucine Rich R 95.3 0.0092 2E-07 35.3 1.3 18 564-581 2-19 (22)
312 PF13671 AAA_33: AAA domain; P 95.3 0.015 3.3E-07 54.3 3.5 23 176-198 1-23 (143)
313 PRK12678 transcription termina 95.3 0.036 7.7E-07 62.0 6.6 88 174-266 416-513 (672)
314 PLN03186 DNA repair protein RA 95.3 0.11 2.4E-06 55.8 10.2 59 174-233 123-184 (342)
315 PTZ00301 uridine kinase; Provi 95.3 0.014 3E-07 58.1 3.2 24 175-198 4-27 (210)
316 COG5238 RNA1 Ran GTPase-activa 95.3 0.026 5.6E-07 56.2 4.9 85 558-642 26-129 (388)
317 KOG2123 Uncharacterized conser 95.3 0.0013 2.9E-08 65.2 -3.9 97 515-614 19-123 (388)
318 cd03246 ABCC_Protease_Secretio 95.2 0.049 1.1E-06 52.8 7.0 25 174-198 28-52 (173)
319 PF13604 AAA_30: AAA domain; P 95.2 0.04 8.7E-07 54.5 6.4 25 174-198 18-42 (196)
320 PF13481 AAA_25: AAA domain; P 95.2 0.083 1.8E-06 52.3 8.8 43 174-216 32-81 (193)
321 PRK03839 putative kinase; Prov 95.2 0.015 3.3E-07 56.8 3.4 23 176-198 2-24 (180)
322 PRK12726 flagellar biosynthesi 95.2 0.16 3.4E-06 54.5 11.0 88 174-266 206-295 (407)
323 KOG0736 Peroxisome assembly fa 95.2 0.062 1.3E-06 61.4 8.3 87 158-267 674-775 (953)
324 COG0563 Adk Adenylate kinase a 95.2 0.029 6.3E-07 54.2 5.2 23 176-198 2-24 (178)
325 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.058 1.3E-06 50.4 7.0 102 174-298 26-130 (144)
326 cd03223 ABCD_peroxisomal_ALDP 95.2 0.085 1.8E-06 50.7 8.3 115 174-298 27-151 (166)
327 PRK05480 uridine/cytidine kina 95.2 0.016 3.4E-07 58.3 3.3 25 174-198 6-30 (209)
328 cd02025 PanK Pantothenate kina 95.2 0.081 1.8E-06 53.3 8.4 23 176-198 1-23 (220)
329 PF01583 APS_kinase: Adenylyls 95.2 0.021 4.4E-07 53.4 3.8 35 175-212 3-37 (156)
330 PF00154 RecA: recA bacterial 95.1 0.079 1.7E-06 55.9 8.5 85 174-266 53-141 (322)
331 cd01124 KaiC KaiC is a circadi 95.1 0.065 1.4E-06 52.7 7.6 44 177-225 2-45 (187)
332 PF06309 Torsin: Torsin; Inte 95.1 0.1 2.2E-06 46.4 7.7 41 158-198 27-77 (127)
333 COG0468 RecA RecA/RadA recombi 95.1 0.086 1.9E-06 54.5 8.4 89 174-266 60-151 (279)
334 PRK09270 nucleoside triphospha 95.1 0.025 5.3E-07 57.7 4.5 25 174-198 33-57 (229)
335 COG4088 Predicted nucleotide k 95.1 0.013 2.8E-07 55.9 2.2 24 175-198 2-25 (261)
336 PF00560 LRR_1: Leucine Rich R 95.1 0.011 2.4E-07 35.0 1.1 21 586-606 1-21 (22)
337 TIGR00064 ftsY signal recognit 95.1 0.1 2.2E-06 54.4 9.0 88 175-266 73-164 (272)
338 PRK00625 shikimate kinase; Pro 95.1 0.017 3.8E-07 55.6 3.1 23 176-198 2-24 (173)
339 TIGR00235 udk uridine kinase. 95.0 0.018 3.9E-07 57.8 3.3 24 175-198 7-30 (207)
340 TIGR02858 spore_III_AA stage I 95.0 0.07 1.5E-06 55.3 7.7 112 174-297 111-231 (270)
341 COG3640 CooC CO dehydrogenase 95.0 0.038 8.2E-07 54.2 5.3 44 176-221 2-45 (255)
342 TIGR00708 cobA cob(I)alamin ad 95.0 0.1 2.2E-06 49.7 8.0 117 175-295 6-140 (173)
343 PRK08972 fliI flagellum-specif 95.0 0.05 1.1E-06 59.7 6.7 89 174-267 162-263 (444)
344 cd03230 ABC_DR_subfamily_A Thi 95.0 0.03 6.5E-07 54.3 4.6 119 174-299 26-159 (173)
345 cd03222 ABC_RNaseL_inhibitor T 95.0 0.03 6.5E-07 54.1 4.6 25 174-198 25-49 (177)
346 COG1428 Deoxynucleoside kinase 95.0 0.021 4.5E-07 55.3 3.3 24 175-198 5-28 (216)
347 cd03214 ABC_Iron-Siderophores_ 95.0 0.069 1.5E-06 52.2 7.1 119 174-297 25-160 (180)
348 PRK04328 hypothetical protein; 94.9 0.076 1.6E-06 54.8 7.7 40 174-216 23-62 (249)
349 TIGR03881 KaiC_arch_4 KaiC dom 94.9 0.11 2.4E-06 53.1 8.9 40 174-216 20-59 (229)
350 PF07726 AAA_3: ATPase family 94.9 0.017 3.8E-07 51.4 2.4 28 177-207 2-29 (131)
351 PRK12723 flagellar biosynthesi 94.9 0.11 2.4E-06 56.7 9.1 89 174-266 174-264 (388)
352 PRK06547 hypothetical protein; 94.9 0.033 7.1E-07 53.6 4.4 25 174-198 15-39 (172)
353 PTZ00088 adenylate kinase 1; P 94.9 0.024 5.2E-07 57.3 3.6 23 176-198 8-30 (229)
354 PRK06217 hypothetical protein; 94.9 0.041 8.9E-07 53.9 5.2 23 176-198 3-25 (183)
355 KOG0735 AAA+-type ATPase [Post 94.8 0.41 8.8E-06 54.5 13.2 166 158-351 669-870 (952)
356 KOG2035 Replication factor C, 94.8 0.67 1.5E-05 46.8 13.3 206 158-381 15-262 (351)
357 PRK04040 adenylate kinase; Pro 94.8 0.022 4.9E-07 55.8 3.3 24 175-198 3-26 (188)
358 PF12061 DUF3542: Protein of u 94.8 0.08 1.7E-06 53.7 7.1 76 11-93 298-373 (402)
359 PTZ00035 Rad51 protein; Provis 94.8 0.23 5E-06 53.5 11.2 58 174-232 118-178 (337)
360 TIGR03575 selen_PSTK_euk L-ser 94.8 0.081 1.8E-06 56.5 7.6 22 177-198 2-23 (340)
361 PRK12724 flagellar biosynthesi 94.8 0.088 1.9E-06 57.4 7.8 25 174-198 223-247 (432)
362 TIGR01360 aden_kin_iso1 adenyl 94.8 0.024 5.1E-07 55.9 3.3 25 174-198 3-27 (188)
363 TIGR02236 recomb_radA DNA repa 94.7 0.11 2.4E-06 55.7 8.7 58 174-232 95-155 (310)
364 TIGR00390 hslU ATP-dependent p 94.7 0.067 1.4E-06 58.1 6.8 41 158-198 14-71 (441)
365 PRK05922 type III secretion sy 94.7 0.086 1.9E-06 58.0 7.7 89 174-267 157-258 (434)
366 cd01135 V_A-ATPase_B V/A-type 94.7 0.14 3E-06 52.7 8.6 94 174-267 69-177 (276)
367 PF00910 RNA_helicase: RNA hel 94.7 0.021 4.7E-07 50.2 2.5 22 177-198 1-22 (107)
368 PHA00729 NTP-binding motif con 94.7 0.024 5.3E-07 56.3 3.1 25 174-198 17-41 (226)
369 PRK08533 flagellar accessory p 94.7 0.16 3.4E-06 51.7 9.1 48 174-226 24-71 (230)
370 PRK09519 recA DNA recombinatio 94.7 0.082 1.8E-06 62.4 7.8 85 174-266 60-148 (790)
371 PF06745 KaiC: KaiC; InterPro 94.7 0.044 9.4E-07 55.9 5.1 88 174-266 19-125 (226)
372 TIGR01359 UMP_CMP_kin_fam UMP- 94.7 0.022 4.8E-07 55.8 2.8 23 176-198 1-23 (183)
373 COG1936 Predicted nucleotide k 94.7 0.025 5.4E-07 52.8 2.9 20 176-195 2-21 (180)
374 COG0488 Uup ATPase components 94.6 0.13 2.9E-06 58.5 9.2 133 174-310 348-510 (530)
375 cd02027 APSK Adenosine 5'-phos 94.6 0.079 1.7E-06 49.8 6.3 23 176-198 1-23 (149)
376 PRK05973 replicative DNA helic 94.6 0.19 4.2E-06 50.8 9.3 48 174-226 64-111 (237)
377 cd00267 ABC_ATPase ABC (ATP-bi 94.6 0.047 1E-06 51.9 4.8 114 175-299 26-144 (157)
378 cd02024 NRK1 Nicotinamide ribo 94.6 0.024 5.2E-07 55.1 2.8 23 176-198 1-23 (187)
379 PRK12597 F0F1 ATP synthase sub 94.6 0.078 1.7E-06 58.9 7.0 91 174-266 143-247 (461)
380 COG0465 HflB ATP-dependent Zn 94.5 0.4 8.7E-06 54.7 12.6 166 158-351 152-355 (596)
381 cd02023 UMPK Uridine monophosp 94.5 0.024 5.2E-07 56.4 2.8 23 176-198 1-23 (198)
382 cd01129 PulE-GspE PulE/GspE Th 94.5 0.077 1.7E-06 55.1 6.6 103 159-274 62-167 (264)
383 TIGR03878 thermo_KaiC_2 KaiC d 94.5 0.083 1.8E-06 54.9 6.8 40 174-216 36-75 (259)
384 cd01125 repA Hexameric Replica 94.5 0.21 4.6E-06 51.3 9.8 23 176-198 3-25 (239)
385 PF08433 KTI12: Chromatin asso 94.5 0.046 1E-06 56.7 4.8 24 175-198 2-25 (270)
386 PRK14974 cell division protein 94.5 0.16 3.4E-06 54.5 8.7 90 174-267 140-233 (336)
387 TIGR00150 HI0065_YjeE ATPase, 94.4 0.062 1.3E-06 48.8 4.9 25 174-198 22-46 (133)
388 PRK11823 DNA repair protein Ra 94.4 0.1 2.3E-06 58.6 7.8 40 174-216 80-119 (446)
389 PRK05703 flhF flagellar biosyn 94.4 0.11 2.5E-06 57.7 8.0 86 175-265 222-308 (424)
390 COG0003 ArsA Predicted ATPase 94.4 0.053 1.1E-06 57.4 4.9 48 175-225 3-50 (322)
391 PRK08927 fliI flagellum-specif 94.4 0.1 2.2E-06 57.5 7.3 89 174-267 158-259 (442)
392 PRK00131 aroK shikimate kinase 94.4 0.034 7.3E-07 54.0 3.3 24 175-198 5-28 (175)
393 PF00158 Sigma54_activat: Sigm 94.4 0.056 1.2E-06 51.8 4.7 41 158-198 1-46 (168)
394 TIGR00554 panK_bact pantothena 94.4 0.25 5.3E-06 51.8 9.8 25 174-198 62-86 (290)
395 PRK06002 fliI flagellum-specif 94.4 0.11 2.3E-06 57.4 7.4 88 174-267 165-265 (450)
396 KOG1051 Chaperone HSP104 and r 94.4 0.15 3.2E-06 60.7 9.0 97 158-268 564-672 (898)
397 COG1066 Sms Predicted ATP-depe 94.3 0.17 3.6E-06 54.1 8.3 85 174-266 93-178 (456)
398 PRK13947 shikimate kinase; Pro 94.3 0.037 7.9E-07 53.6 3.3 23 176-198 3-25 (171)
399 PRK10875 recD exonuclease V su 94.3 0.17 3.7E-06 58.8 9.3 67 162-228 155-221 (615)
400 cd02020 CMPK Cytidine monophos 94.3 0.032 6.9E-07 52.4 2.8 23 176-198 1-23 (147)
401 PRK13949 shikimate kinase; Pro 94.3 0.038 8.3E-07 53.1 3.4 24 175-198 2-25 (169)
402 PRK14721 flhF flagellar biosyn 94.3 0.22 4.7E-06 54.9 9.5 59 174-233 191-250 (420)
403 cd02028 UMPK_like Uridine mono 94.3 0.043 9.3E-07 53.4 3.7 23 176-198 1-23 (179)
404 PRK05986 cob(I)alamin adenolsy 94.2 0.12 2.6E-06 50.0 6.6 117 174-295 22-158 (191)
405 PRK05201 hslU ATP-dependent pr 94.2 0.094 2E-06 57.0 6.5 41 158-198 17-74 (443)
406 COG0467 RAD55 RecA-superfamily 94.2 0.086 1.9E-06 55.0 6.3 50 174-228 23-72 (260)
407 cd01130 VirB11-like_ATPase Typ 94.2 0.045 9.8E-07 53.7 3.9 94 174-274 25-118 (186)
408 PF12775 AAA_7: P-loop contain 94.2 0.076 1.6E-06 55.4 5.7 85 167-266 24-110 (272)
409 TIGR02322 phosphon_PhnN phosph 94.2 0.038 8.3E-07 53.9 3.4 24 175-198 2-25 (179)
410 PRK06995 flhF flagellar biosyn 94.2 0.17 3.6E-06 56.8 8.7 58 175-233 257-315 (484)
411 TIGR03498 FliI_clade3 flagella 94.2 0.1 2.2E-06 57.4 6.9 90 174-267 140-241 (418)
412 COG2884 FtsE Predicted ATPase 94.2 0.18 3.9E-06 47.9 7.4 25 174-198 28-52 (223)
413 PRK10463 hydrogenase nickel in 94.2 0.19 4.1E-06 52.2 8.4 25 174-198 104-128 (290)
414 KOG0729 26S proteasome regulat 94.2 0.13 2.8E-06 51.0 6.7 40 159-198 180-235 (435)
415 cd00227 CPT Chloramphenicol (C 94.1 0.043 9.2E-07 53.3 3.4 24 175-198 3-26 (175)
416 cd03217 ABC_FeS_Assembly ABC-t 94.1 0.11 2.4E-06 51.7 6.3 24 174-197 26-49 (200)
417 cd02021 GntK Gluconate kinase 94.1 0.037 8E-07 52.2 2.8 23 176-198 1-23 (150)
418 PRK14530 adenylate kinase; Pro 94.0 0.043 9.3E-07 55.4 3.4 24 175-198 4-27 (215)
419 PF02374 ArsA_ATPase: Anion-tr 94.0 0.058 1.3E-06 57.3 4.4 46 175-223 2-47 (305)
420 COG2401 ABC-type ATPase fused 94.0 0.062 1.3E-06 56.9 4.4 149 158-306 373-579 (593)
421 PF00625 Guanylate_kin: Guanyl 94.0 0.078 1.7E-06 51.9 5.0 37 175-214 3-39 (183)
422 PF13306 LRR_5: Leucine rich r 94.0 0.18 3.9E-06 45.9 7.2 118 511-635 8-128 (129)
423 TIGR00416 sms DNA repair prote 94.0 0.18 4E-06 56.6 8.6 40 174-216 94-133 (454)
424 COG3598 RepA RecA-family ATPas 94.0 0.17 3.7E-06 51.9 7.3 68 168-235 82-158 (402)
425 PRK05439 pantothenate kinase; 93.9 0.2 4.4E-06 52.8 8.1 25 174-198 86-110 (311)
426 PRK08149 ATP synthase SpaL; Va 93.9 0.24 5.1E-06 54.6 9.0 89 174-267 151-252 (428)
427 cd01122 GP4d_helicase GP4d_hel 93.9 0.33 7.2E-06 50.9 10.0 52 174-229 30-81 (271)
428 PF13245 AAA_19: Part of AAA d 93.9 0.11 2.3E-06 42.3 4.8 24 174-197 10-33 (76)
429 cd01136 ATPase_flagellum-secre 93.9 0.25 5.4E-06 52.5 8.8 88 174-266 69-169 (326)
430 COG1875 NYN ribonuclease and A 93.9 0.12 2.7E-06 54.0 6.2 36 160-195 228-266 (436)
431 PF03205 MobB: Molybdopterin g 93.8 0.054 1.2E-06 50.1 3.4 39 175-215 1-39 (140)
432 PRK06936 type III secretion sy 93.8 0.16 3.4E-06 56.0 7.4 89 174-267 162-263 (439)
433 TIGR00764 lon_rel lon-related 93.8 0.15 3.2E-06 59.6 7.7 71 158-231 20-91 (608)
434 PRK00889 adenylylsulfate kinas 93.8 0.051 1.1E-06 52.8 3.3 24 175-198 5-28 (175)
435 PRK07132 DNA polymerase III su 93.8 1.8 3.9E-05 45.7 15.0 155 174-356 18-184 (299)
436 TIGR01069 mutS2 MutS2 family p 93.8 0.045 9.7E-07 65.6 3.4 114 255-379 401-522 (771)
437 KOG0726 26S proteasome regulat 93.8 0.33 7.1E-06 49.0 8.8 41 158-198 187-243 (440)
438 KOG0727 26S proteasome regulat 93.8 0.077 1.7E-06 52.1 4.3 41 158-198 157-213 (408)
439 PRK14723 flhF flagellar biosyn 93.8 0.22 4.7E-06 58.7 8.9 87 175-266 186-273 (767)
440 cd01132 F1_ATPase_alpha F1 ATP 93.8 0.25 5.4E-06 50.8 8.3 89 174-267 69-172 (274)
441 cd00464 SK Shikimate kinase (S 93.7 0.05 1.1E-06 51.5 3.1 22 177-198 2-23 (154)
442 TIGR03263 guanyl_kin guanylate 93.7 0.051 1.1E-06 53.1 3.2 24 175-198 2-25 (180)
443 KOG0927 Predicted transporter 93.7 1.6 3.4E-05 48.6 14.5 240 6-291 277-563 (614)
444 COG1124 DppF ABC-type dipeptid 93.7 0.082 1.8E-06 52.4 4.4 25 174-198 33-57 (252)
445 KOG2170 ATPase of the AAA+ sup 93.7 0.14 3.1E-06 52.1 6.2 41 158-198 84-134 (344)
446 TIGR01420 pilT_fam pilus retra 93.7 0.062 1.3E-06 58.3 4.1 109 174-295 122-230 (343)
447 TIGR01040 V-ATPase_V1_B V-type 93.7 0.21 4.6E-06 55.0 8.0 93 174-267 141-258 (466)
448 PF03266 NTPase_1: NTPase; In 93.7 0.052 1.1E-06 52.0 3.0 22 177-198 2-23 (168)
449 PRK13948 shikimate kinase; Pro 93.7 0.064 1.4E-06 52.1 3.6 25 174-198 10-34 (182)
450 PRK05688 fliI flagellum-specif 93.7 0.17 3.6E-06 56.1 7.2 89 174-267 168-269 (451)
451 cd00071 GMPK Guanosine monopho 93.6 0.058 1.3E-06 49.8 3.2 23 176-198 1-23 (137)
452 TIGR02655 circ_KaiC circadian 93.6 0.3 6.4E-06 55.9 9.6 86 174-265 263-362 (484)
453 PRK13765 ATP-dependent proteas 93.6 0.13 2.9E-06 59.9 6.7 72 158-232 33-105 (637)
454 COG0714 MoxR-like ATPases [Gen 93.6 0.14 3E-06 55.5 6.5 61 158-224 26-87 (329)
455 COG0396 sufC Cysteine desulfur 93.6 0.28 6.2E-06 48.2 7.8 59 247-308 153-217 (251)
456 PRK09280 F0F1 ATP synthase sub 93.5 0.21 4.6E-06 55.3 7.8 92 174-267 144-249 (463)
457 cd00544 CobU Adenosylcobinamid 93.5 0.35 7.6E-06 46.4 8.4 79 177-265 2-82 (169)
458 PRK13946 shikimate kinase; Pro 93.5 0.069 1.5E-06 52.3 3.6 25 174-198 10-34 (184)
459 PF03193 DUF258: Protein of un 93.5 0.11 2.3E-06 49.0 4.6 34 165-198 26-59 (161)
460 PRK05057 aroK shikimate kinase 93.5 0.064 1.4E-06 51.8 3.4 24 175-198 5-28 (172)
461 PRK10751 molybdopterin-guanine 93.5 0.064 1.4E-06 51.2 3.2 25 174-198 6-30 (173)
462 COG1419 FlhF Flagellar GTP-bin 93.5 0.33 7.1E-06 52.3 8.8 60 174-234 203-263 (407)
463 PF03308 ArgK: ArgK protein; 93.4 0.11 2.5E-06 52.2 5.0 48 174-222 29-76 (266)
464 TIGR01313 therm_gnt_kin carboh 93.4 0.052 1.1E-06 52.1 2.6 22 177-198 1-22 (163)
465 PRK12339 2-phosphoglycerate ki 93.4 0.066 1.4E-06 52.8 3.3 24 175-198 4-27 (197)
466 TIGR03305 alt_F1F0_F1_bet alte 93.4 0.19 4.2E-06 55.5 7.2 92 174-267 138-243 (449)
467 PRK15453 phosphoribulokinase; 93.4 0.34 7.3E-06 49.9 8.4 24 175-198 6-29 (290)
468 PF13086 AAA_11: AAA domain; P 93.4 0.19 4E-06 51.4 6.8 64 165-228 7-75 (236)
469 COG1703 ArgK Putative periplas 93.4 0.11 2.4E-06 53.0 4.8 48 174-222 51-98 (323)
470 PRK13975 thymidylate kinase; P 93.4 0.066 1.4E-06 53.1 3.3 24 175-198 3-26 (196)
471 PTZ00185 ATPase alpha subunit; 93.3 0.28 6.1E-06 54.5 8.2 92 174-267 189-300 (574)
472 PRK00300 gmk guanylate kinase; 93.3 0.068 1.5E-06 53.5 3.4 24 175-198 6-29 (205)
473 cd01672 TMPK Thymidine monopho 93.3 0.16 3.4E-06 50.5 6.0 24 175-198 1-24 (200)
474 PRK10078 ribose 1,5-bisphospho 93.3 0.065 1.4E-06 52.6 3.1 24 175-198 3-26 (186)
475 cd02029 PRK_like Phosphoribulo 93.3 0.22 4.7E-06 50.8 6.8 23 176-198 1-23 (277)
476 PF08477 Miro: Miro-like prote 93.3 0.072 1.6E-06 47.8 3.2 22 177-198 2-23 (119)
477 KOG1532 GTPase XAB1, interacts 93.3 0.079 1.7E-06 52.9 3.5 60 174-234 19-87 (366)
478 PF08298 AAA_PrkA: PrkA AAA do 93.2 0.11 2.4E-06 54.9 4.7 42 157-198 62-112 (358)
479 PRK07721 fliI flagellum-specif 93.2 0.21 4.7E-06 55.5 7.3 87 174-266 158-258 (438)
480 PRK09099 type III secretion sy 93.2 0.31 6.6E-06 54.1 8.4 90 174-267 163-264 (441)
481 COG0237 CoaE Dephospho-CoA kin 93.2 0.071 1.5E-06 52.5 3.2 22 175-196 3-24 (201)
482 PRK10416 signal recognition pa 93.2 0.43 9.4E-06 50.9 9.3 24 175-198 115-138 (318)
483 TIGR01287 nifH nitrogenase iro 93.2 0.066 1.4E-06 56.4 3.2 25 175-199 1-25 (275)
484 PF13521 AAA_28: AAA domain; P 93.2 0.065 1.4E-06 51.4 2.9 21 177-197 2-22 (163)
485 KOG3347 Predicted nucleotide k 93.2 0.067 1.5E-06 48.3 2.6 24 175-198 8-31 (176)
486 PHA02244 ATPase-like protein 93.1 0.15 3.3E-06 54.5 5.7 41 158-198 98-143 (383)
487 cd02117 NifH_like This family 93.1 0.074 1.6E-06 53.5 3.3 24 175-198 1-24 (212)
488 TIGR00382 clpX endopeptidase C 93.1 0.25 5.5E-06 54.3 7.6 42 157-198 78-140 (413)
489 TIGR01039 atpD ATP synthase, F 93.1 0.29 6.2E-06 54.2 7.9 92 174-267 143-248 (461)
490 PRK03846 adenylylsulfate kinas 93.1 0.077 1.7E-06 52.7 3.3 25 174-198 24-48 (198)
491 COG2019 AdkA Archaeal adenylat 93.1 0.075 1.6E-06 49.1 2.9 24 175-198 5-28 (189)
492 PRK04182 cytidylate kinase; Pr 93.1 0.079 1.7E-06 51.7 3.3 23 176-198 2-24 (180)
493 COG0703 AroK Shikimate kinase 93.0 0.088 1.9E-06 49.7 3.4 23 176-198 4-26 (172)
494 PRK15429 formate hydrogenlyase 93.0 0.18 3.9E-06 60.5 7.0 41 158-198 378-423 (686)
495 PRK05800 cobU adenosylcobinami 93.0 0.32 6.9E-06 46.7 7.3 83 175-265 2-85 (170)
496 PRK06761 hypothetical protein; 93.0 0.17 3.6E-06 52.6 5.7 24 175-198 4-27 (282)
497 PRK14527 adenylate kinase; Pro 93.0 0.082 1.8E-06 52.2 3.4 24 175-198 7-30 (191)
498 PF13504 LRR_7: Leucine rich r 93.0 0.071 1.5E-06 29.2 1.6 14 564-577 3-16 (17)
499 PRK14529 adenylate kinase; Pro 93.0 0.33 7.1E-06 48.7 7.5 82 176-266 2-86 (223)
500 PF10236 DAP3: Mitochondrial r 93.0 2.4 5.3E-05 45.2 14.6 49 306-354 258-306 (309)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-98 Score=877.57 Aligned_cols=837 Identities=40% Similarity=0.654 Sum_probs=707.1
Q ss_pred HHHHHHHHhhhccchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCc
Q 002691 14 IFTLCLNCTVNKATYVRQLKDNLRALQSELEKLIEARNDVMRRVEVAEQRRMKRTDQVQGWLSRVQAAETEVGQLTRDSP 93 (892)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~v~~Wl~~~~~~~~~~~d~~d~~~ 93 (892)
.++++.+.+.+++..+.+.++.+..+++++..|+.++.|++ .++. ....+..|.+.+++++|+++|+++.|.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~-------a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLD-------AKRD-DLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-------hhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888889999999999999999999999999998853 3332 335688999999999999999999876
Q ss_pred cccc----------------cccccCccCcccccccchHHHHHHHHHHHHHHhccCCcceeec-ccccccccccccCCCC
Q 002691 94 QEID----------------KLCLGGYCSRNYKSSYRFGKLVAETLLVVRTLMGERDFDEVVV-EIVEESFVADERPTEP 156 (892)
Q Consensus 94 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 156 (892)
.+.. +-|..++|++.....+.+++++-+.++.++.+..++.|+.+.. ..+ ......+|..+
T Consensus 80 v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~--~~~~e~~~~~~ 157 (889)
T KOG4658|consen 80 VEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDP--REKVETRPIQS 157 (889)
T ss_pred HHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccc--hhhcccCCCCc
Confidence 5432 2344567777777888899999999999999988876766543 222 23344445444
Q ss_pred cc-cchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCC
Q 002691 157 LV-VGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGL 232 (892)
Q Consensus 157 ~~-vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (892)
.. ||.+..++++++.|. ..+++|+||||+||||||+.++|+...++.+|+.++||+||+.++..+++++|++.++.
T Consensus 158 ~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 158 ESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred cccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 23 999999999999999 77999999999999999999999994489999999999999999999999999999998
Q ss_pred CCCcccCCChHHHHHHHHHHhccCcEEEEEecccccccccccccccCCCCCCCcEEEEEecchhhccc-ccccceEEccC
Q 002691 233 FDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERVDLTKVGVPVPNSRNVASKVVFTTRLLDVCGL-MEAHKKFKVEC 311 (892)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IiiTTR~~~v~~~-~~~~~~~~l~~ 311 (892)
.+..+.....++.+..+.+.|++|||+|||||||+..+|+.++.++|.. .+||||++|||++.||.. +++...+++++
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~-~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~ 316 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSR-ENGSKVVLTTRSEEVCGRAMGVDYPIEVEC 316 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCc-cCCeEEEEEeccHhhhhccccCCccccccc
Confidence 7666666667899999999999999999999999999999999999998 899999999999999998 88888999999
Q ss_pred CChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhh-hcccCCCchh
Q 002691 312 LSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGRAMAYKTTPEEWRYAIQVLRRA-ASEFAGLGKE 390 (892)
Q Consensus 312 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~ 390 (892)
|+++|||.||++.||.......+.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++.+.+.+. ..+.+++.+.
T Consensus 317 L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred cCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 999999999999999876566677999999999999999999999999999999999999999999887 5556677789
Q ss_pred hhhhhhhhhcCCCchhhhHHHhhhcCCCCCccccHHHHHHHHHhCCCCCC-chHHHHHhhcchhHHHHHHHHhhcceeec
Q 002691 391 VYPLLKFSYDSLFNDTIRSCLLYCSLYPEDYHISKSDLIDCWIGEGFLDE-NDRFEAQKQNQGYFTIGILVHACLLEEVE 469 (892)
Q Consensus 391 i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~-~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 469 (892)
++++|++||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+ .....+ ++.|+.|+++|++++|++...
T Consensus 397 i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~--~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 397 ILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETA--EDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccch--hcchHHHHHHHHHHHHHhhcc
Confidence 99999999999995 99999999999999999999999999999999998 556777 899999999999999999863
Q ss_pred ----CCceeehHHHHHHHHHHHhhcccccccEEEEeCCCccccccccCccceEEEEcccccccccccccCCCCcccEEEe
Q 002691 470 ----DDKVKMHDVIRDMTLWIACEVEKEKENFLVYAGAGLCKASTISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFL 545 (892)
Q Consensus 470 ----~~~~~mHdlv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l 545 (892)
..+|+|||+||++|.+++++.+.+++++++..+.+....+....+..+|++++.++.+..++.. ..+++|++|.+
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll 552 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS-SENPKLRTLLL 552 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCC-CCCCccceEEE
Confidence 3789999999999999999888888888888777777788888999999999999999988877 77889999999
Q ss_pred cCCc--cccccchhhcCCCCCcEEEecCc-cccccChhhcCcCcCCEEeccCCCccccchhhhcCCCCCEEecCCCcCcc
Q 002691 546 NNNK--LEVISSRFFHYMPSLKVLKLSHI-QLTELPSRISKLVSLQHLDLSHTRIKELPGELEILVNLKCLNLNHTMYLS 622 (892)
Q Consensus 546 ~~~~--~~~~~~~~~~~l~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~ 622 (892)
.+|. +..++..+|..|+.|++|||++| .+.++|++|++|.|||||+++++.|+.+|.++++|.+|.+|++..+..+.
T Consensus 553 ~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 553 QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc
Confidence 9995 78888889999999999999987 78899999999999999999999999999999999999999999998777
Q ss_pred ccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHHhcCCCCCcEEEEEecchhhHHHhhccchhhcccee
Q 002691 623 VIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEELLGLKNLEVLEFTLTSSHVLQMFLTSNELRRCSQA 702 (892)
Q Consensus 623 ~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 702 (892)
.+| ++...|++|++|.+.... .. .+...+.++..+++|+.+.+...+......+.....+....+.
T Consensus 633 ~~~-~i~~~L~~Lr~L~l~~s~------~~-------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 633 SIP-GILLELQSLRVLRLPRSA------LS-------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQS 698 (889)
T ss_pred ccc-chhhhcccccEEEeeccc------cc-------cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHh
Confidence 765 447779999999998532 11 1556788899999999999977666445555555555556666
Q ss_pred eEecCCCCCcccccccccccCCCCEEeEecCCCccceeeccccc---cC-CCCcCEEEEecCCCCCCCcccccCCCccEE
Q 002691 703 LFLDGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQS---CV-FNSLQKVQISLCSKLKDLTFLVFAPNVKSI 778 (892)
Q Consensus 703 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~---~~-l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L 778 (892)
+.+.++...+. .+++..+.+|+.|.|.+|...+.. ..+... .. |+++.++.+.+|..++.+.|....|+|+.|
T Consensus 699 l~~~~~~~~~~--~~~~~~l~~L~~L~i~~~~~~e~~-~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l 775 (889)
T KOG4658|consen 699 LSIEGCSKRTL--ISSLGSLGNLEELSILDCGISEIV-IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSL 775 (889)
T ss_pred hhhccccccee--ecccccccCcceEEEEcCCCchhh-cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEE
Confidence 66655332222 246788999999999999876422 222111 12 678999999999999999999899999999
Q ss_pred EEecCcchhhhhccCcccCCcccccCCCCccCcccEe-ecCcccccccccCCCCCCCCccEEeeccccccCCCCCCCCcc
Q 002691 779 EIRSCLAMEEIISVQKFADFPETVRNNLNPFAKLQHL-ELVCLRNLNSIYWKPLPFSQLKEMLVDDCYFLKKLPLDFNSA 857 (892)
Q Consensus 779 ~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~ 857 (892)
.+..|..++++++......... .....|+++..+ .+.+.+.+..+...+..+++|+.+.+..||++.++|......
T Consensus 776 ~l~~~~~~e~~i~~~k~~~~l~---~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~ 852 (889)
T KOG4658|consen 776 SLVSCRLLEDIIPKLKALLELK---ELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLT 852 (889)
T ss_pred EEecccccccCCCHHHHhhhcc---cEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccc
Confidence 9999999998876433222111 123456777777 577788888888888888999999999999999999987665
Q ss_pred C---CcceEEechHhhhhhcccCcccccccc
Q 002691 858 K---ERKIVIRGEEYWWRRLQWEDEATQNAF 885 (892)
Q Consensus 858 ~---~~l~~~~~~~~~~~~l~w~~~~~~~~~ 885 (892)
. ........+.+|.+.+.|.++.++..+
T Consensus 853 i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 853 IVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred eeccccceeecCCccceeeEEehhhhhhhhc
Confidence 2 244555667889999999999998876
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-64 Score=627.44 Aligned_cols=633 Identities=21% Similarity=0.268 Sum_probs=456.1
Q ss_pred ccchHHHHHHHHHhhc-----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe---CCc-----------cC
Q 002691 158 VVGLQSILEQVWSCLT-----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVV---SKD-----------LQ 218 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s~~-----------~~ 218 (892)
+|||+.+++++..++. +++|+||||||+||||||+++|++. ...|+..+|+.. +.. +.
T Consensus 186 ~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~ 262 (1153)
T PLN03210 186 FVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDDYN 262 (1153)
T ss_pred ccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccccc
Confidence 8999999999999887 7899999999999999999999987 568888888742 111 01
Q ss_pred -HHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccccccccccccccCCCCCCCcEEEEEecchhh
Q 002691 219 -LEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERVDLTKVGVPVPNSRNVASKVVFTTRLLDV 297 (892)
Q Consensus 219 -~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IiiTTR~~~v 297 (892)
...++++++.++...... .... ...+++.++++|+||||||||+..+|+.+..... ++++||+||||||++.+
T Consensus 263 ~~~~l~~~~l~~il~~~~~-~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~-~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 263 MKLHLQRAFLSEILDKKDI-KIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ-WFGSGSRIIVITKDKHF 336 (1153)
T ss_pred hhHHHHHHHHHHHhCCCCc-ccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc-cCCCCcEEEEEeCcHHH
Confidence 123445555544221110 1111 2457788999999999999999988888865443 34789999999999999
Q ss_pred cccccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHH
Q 002691 298 CGLMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGRAMAYKTTPEEWRYAIQVL 377 (892)
Q Consensus 298 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~l~~l 377 (892)
+..++...+|+++.|++++||+||+++||... .++.++.+++++|+++|+|+||||+++|++|++ ++..+|+.+++.+
T Consensus 337 l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L 414 (1153)
T PLN03210 337 LRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRL 414 (1153)
T ss_pred HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 98777788999999999999999999999765 344568899999999999999999999999998 5889999999988
Q ss_pred HhhhcccCCCchhhhhhhhhhhcCCCchhhhHHHhhhcCCCCCccccHHHHHHHHHhCCCCCCchHHHHHhhcchhHHHH
Q 002691 378 RRAASEFAGLGKEVYPLLKFSYDSLFNDTIRSCLLYCSLYPEDYHISKSDLIDCWIGEGFLDENDRFEAQKQNQGYFTIG 457 (892)
Q Consensus 378 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~l~ 457 (892)
+... ++.|..+|++||+.|+++..|.||+++|+||.+..++ .+..|++.+.... ...++
T Consensus 415 ~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~------------~~~l~ 473 (1153)
T PLN03210 415 RNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV------------NIGLK 473 (1153)
T ss_pred HhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc------------hhChH
Confidence 7643 3589999999999998746899999999999987654 3677887754432 22388
Q ss_pred HHHHhhcceeecCCceeehHHHHHHHHHHHhhcc--cccccEEEEeCCC----------------------cc----ccc
Q 002691 458 ILVHACLLEEVEDDKVKMHDVIRDMTLWIACEVE--KEKENFLVYAGAG----------------------LC----KAS 509 (892)
Q Consensus 458 ~L~~~~ll~~~~~~~~~mHdlv~~~~~~i~~~~~--~~~~~~~~~~~~~----------------------~~----~~~ 509 (892)
.|+++||++.. .+.+.|||++|++|+++++++. +.++.+++....- .. ...
T Consensus 474 ~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 474 NLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred HHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 99999999876 5689999999999999997753 2233444322100 00 001
Q ss_pred cccCccceEEEEcccccc-------cccccccCCC-CcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhh
Q 002691 510 TISGWVKIRRLSLMENHI-------EDLSNIYPRC-PHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRI 581 (892)
Q Consensus 510 ~~~~~~~l~~L~l~~~~~-------~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i 581 (892)
.+.++++++.|.+..+.. ..+|..+..+ .+|+.|.+.++.+..+|.. | .+.+|+.|+++++.+..+|..+
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCcccccccccc
Confidence 234556666666654321 1234444443 3577777777777777665 2 4677888888888888888778
Q ss_pred cCcCcCCEEeccCC-CccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccch
Q 002691 582 SKLVSLQHLDLSHT-RIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFAR 660 (892)
Q Consensus 582 ~~L~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 660 (892)
..+++|++|+|+++ .++.+| .++.+++|++|++++|..+..+|.. ++.+++|+.|++..|.... .
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~-----~------- 696 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLE-----I------- 696 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcC-----c-------
Confidence 88888888888876 466776 4777888888888888777778876 7788888888887543321 1
Q ss_pred hhhHHHHhcCCCCCcEEEEEecchhhHHHhhccchhhccceeeEecCCCCCcccccc-----------------------
Q 002691 661 DELLVEELLGLKNLEVLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDAS----------------------- 717 (892)
Q Consensus 661 ~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------------- 717 (892)
.+..+ ++++|+.|.++.+.. +..+. ....+|+.|+++++. +..++..
T Consensus 697 ---Lp~~i-~l~sL~~L~Lsgc~~--L~~~p---~~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 697 ---LPTGI-NLKSLYRLNLSGCSR--LKSFP---DISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred ---cCCcC-CCCCCCEEeCCCCCC--ccccc---cccCCcCeeecCCCc-cccccccccccccccccccccchhhccccc
Confidence 11111 567788888775432 11111 112345555555443 1111100
Q ss_pred ------cccccCCCCEEeEecCCCccceeeccccccCCCCcCEEEEecCCCCCCCcccccCCCccEEEEecCcchhhhhc
Q 002691 718 ------QLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSLQKVQISLCSKLKDLTFLVFAPNVKSIEIRSCLAMEEIIS 791 (892)
Q Consensus 718 ------~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~ 791 (892)
....+++|+.|++++|+.+..+|..+. .+++|+.|+|++|..++.+|....+++|+.|++++|..+..++.
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~---~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ---NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChhhh---CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 011135788888888877777665543 58899999999998888888655788999999999888766543
Q ss_pred cCcc-------cCCcccccCCCCccCcccEeecCcccccccccCCCCCCCCccEEeeccccccCCCCC
Q 002691 792 VQKF-------ADFPETVRNNLNPFAKLQHLELVCLRNLNSIYWKPLPFSQLKEMLVDDCYFLKKLPL 852 (892)
Q Consensus 792 ~~~~-------~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lP~ 852 (892)
.... ....+.++..+..+++|+.|++.+|++|+.++.....+++|+.+++.+|++|+.++.
T Consensus 844 ~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 844 ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 1100 001112444667899999999999999999998888899999999999999997765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.1e-44 Score=384.50 Aligned_cols=277 Identities=34% Similarity=0.606 Sum_probs=229.2
Q ss_pred hHHHHHHHHHhhc-----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCC
Q 002691 161 LQSILEQVWSCLT-----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDG 235 (892)
Q Consensus 161 r~~~~~~l~~~l~-----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 235 (892)
||.++++|.+.|. .++|+|+||||+||||||+.++++. ..+.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 7899999999998 7899999999999999999999995 358899999999999999999999999999988754
Q ss_pred cc-cCCChHHHHHHHHHHhccCcEEEEEecccccccccccccccCCCCCCCcEEEEEecchhhcccccc-cceEEccCCC
Q 002691 236 LW-KNRSREEKALDIFKVLSKKKFVLLLDDLWERVDLTKVGVPVPNSRNVASKVVFTTRLLDVCGLMEA-HKKFKVECLS 313 (892)
Q Consensus 236 ~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IiiTTR~~~v~~~~~~-~~~~~l~~L~ 313 (892)
.. ...+.++....+++.|+++++||||||||+...|+.+...++.. ..|++||||||+..++..++. ...|++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~-~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSF-SSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCH-HSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 33 45677889999999999999999999999999998888777766 679999999999999877664 6789999999
Q ss_pred hHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhhcccCCCchhhhh
Q 002691 314 DEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGRAMAYKTTPEEWRYAIQVLRRAASEFAGLGKEVYP 393 (892)
Q Consensus 314 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~ 393 (892)
.+||++||.+.++......++..++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.+.....+..+....+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999986553344566789999999999999999999999976667889999999888776544445578999
Q ss_pred hhhhhhcCCCchhhhHHHhhhcCCCCCccccHHHHHHHHHhCCCCCC
Q 002691 394 LLKFSYDSLFNDTIRSCLLYCSLYPEDYHISKSDLIDCWIGEGFLDE 440 (892)
Q Consensus 394 ~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~ 440 (892)
++.+||+.||+ ++|.||+|||+||+++.|+++.|+++|+++|++..
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999 89999999999999999999999999999999976
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=2.5e-20 Score=232.88 Aligned_cols=316 Identities=19% Similarity=0.149 Sum_probs=174.2
Q ss_pred CccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCcccc-ccChhhcCcCcCCEEe
Q 002691 513 GWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLT-ELPSRISKLVSLQHLD 591 (892)
Q Consensus 513 ~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~ 591 (892)
.++++++|++++|.+....+. ..+++|++|++++|.+....+..++++++|++|++++|.+. .+|..++++++|++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred cCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 445666666666655432111 34566666666666655444444666667777777666654 4566666677777777
Q ss_pred ccCCCcc-ccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHHhcC
Q 002691 592 LSHTRIK-ELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEELLG 670 (892)
Q Consensus 592 l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 670 (892)
+++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++..+ .+. ...+..+++
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n------~l~---------~~~p~~l~~ 258 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYN------NLT---------GPIPSSLGN 258 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCc------eec---------cccChhHhC
Confidence 7666655 45666666777777777666554455655 666677777666532 111 113445666
Q ss_pred CCCCcEEEEEecchhh-HHHhhccchhhccceeeEecCCCCCcccccccccccCCCCEEeEecCCCccceeeccccccCC
Q 002691 671 LKNLEVLEFTLTSSHV-LQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVF 749 (892)
Q Consensus 671 l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l 749 (892)
+++|+.|+++.+.... .+.. .....+|+.|+++++.-....+ ..+..+++|+.|+++++.....++..+. .+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~l 331 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPS---IFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALT---SL 331 (968)
T ss_pred CCCCCEEECcCCeeeccCchh---HhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcCChhHh---cC
Confidence 7777777766554321 1111 1122466777776654322222 2455667777777776543333322222 46
Q ss_pred CCcCEEEEecCCCCCCCc-ccccCCCccEEEEecCcchhhhhccCc-----------ccCCcccccCCCCccCcccEeec
Q 002691 750 NSLQKVQISLCSKLKDLT-FLVFAPNVKSIEIRSCLAMEEIISVQK-----------FADFPETVRNNLNPFAKLQHLEL 817 (892)
Q Consensus 750 ~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~L~~L~L 817 (892)
++|+.|++++|.....+| .++.+++|+.|++++|.....++.... .......++..+..+++|+.|++
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L 411 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEEC
Confidence 777777777775443444 456677777777776643322211000 00000012223455677777777
Q ss_pred CcccccccccCCCCCCCCccEEeeccccccCCCCC
Q 002691 818 VCLRNLNSIYWKPLPFSQLKEMLVDDCYFLKKLPL 852 (892)
Q Consensus 818 ~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lP~ 852 (892)
.+|.--..++.....+++|+.|++++|.--..+|.
T Consensus 412 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446 (968)
T ss_pred cCCEeeeECChhHhcCCCCCEEECcCCcccCccCh
Confidence 77654334444445677777777777653333443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=4.4e-20 Score=230.71 Aligned_cols=320 Identities=19% Similarity=0.199 Sum_probs=190.8
Q ss_pred cCccceEEEEccccccc-ccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCcccc-ccChhhcCcCcCCE
Q 002691 512 SGWVKIRRLSLMENHIE-DLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLT-ELPSRISKLVSLQH 589 (892)
Q Consensus 512 ~~~~~l~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~ 589 (892)
..++++++|++++|.+. .+|..+..+++|++|++++|.+....+..+.++++|++|++++|.+. .+|..++++++|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 34567788888887775 45666677788888888887766555555777888888888887766 46777788888888
Q ss_pred EeccCCCcc-ccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHHh
Q 002691 590 LDLSHTRIK-ELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEEL 668 (892)
Q Consensus 590 L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L 668 (892)
|++++|++. .+|..++++++|++|++++|.....+|.. ++++++|++|++..+. +.+ ..+..+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~------l~~---------~~p~~l 280 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNK------LSG---------PIPPSI 280 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCe------eec---------cCchhH
Confidence 888887766 67777788888888888877655566665 7777888887776421 111 122334
Q ss_pred cCCCCCcEEEEEecchh-hHHHhhcc---------------------chhhccceeeEecCCCCCcccccccccccCCCC
Q 002691 669 LGLKNLEVLEFTLTSSH-VLQMFLTS---------------------NELRRCSQALFLDGLKNSKWIDASQLAELKHLN 726 (892)
Q Consensus 669 ~~l~~L~~L~l~~~~~~-~~~~~~~~---------------------~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 726 (892)
.++++|+.|+++.+... ..+..... ....++|+.|++.++.-....+ ..+..+++|+
T Consensus 281 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~ 359 (968)
T PLN00113 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLT 359 (968)
T ss_pred hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCc
Confidence 44455555555443321 11111110 1112244444444433211111 1334445555
Q ss_pred EEeEecCCCccceeeccccccCCCCcCEEEEecCCCCCCCc-ccccCCCccEEEEecCcchhhhhccCcccCCcccccCC
Q 002691 727 RLRIRDCEELEELKVDLRQSCVFNSLQKVQISLCSKLKDLT-FLVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNN 805 (892)
Q Consensus 727 ~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~ 805 (892)
.|+++++.....++..+. .+++|+.|++++|.....+| .+..+++|+.|++++|.....+ +..
T Consensus 360 ~L~Ls~n~l~~~~p~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~-------------p~~ 423 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLC---SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL-------------PSE 423 (968)
T ss_pred EEECCCCeeEeeCChhHh---CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC-------------Chh
Confidence 555554432222221111 34556666665554333333 4556677777777766533222 235
Q ss_pred CCccCcccEeecCcccccccccCCCCCCCCccEEeeccccccCCCCCCCCccCCcceEEec
Q 002691 806 LNPFAKLQHLELVCLRNLNSIYWKPLPFSQLKEMLVDDCYFLKKLPLDFNSAKERKIVIRG 866 (892)
Q Consensus 806 ~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~~~l~~~~~ 866 (892)
+..+++|+.|+++++.-...++.....+++|+.|++++|.-...+|..+.. ..+..++.
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--~~L~~L~l 482 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDL 482 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc--ccceEEEC
Confidence 678999999999987544445444557899999999999877778875542 44444443
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=2.2e-19 Score=224.15 Aligned_cols=312 Identities=21% Similarity=0.323 Sum_probs=210.3
Q ss_pred cceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCc-cccccChhhcCcCcCCEEecc
Q 002691 515 VKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHI-QLTELPSRISKLVSLQHLDLS 593 (892)
Q Consensus 515 ~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~ 593 (892)
.+++.|.+.++.+..+|..+ .+.+|+.|++.+|.+..++.. +..+++|++|+|+++ .+..+| .++.+++|++|+++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 46899999999998898874 678999999999988887765 678999999999987 567777 58889999999999
Q ss_pred CC-CccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccC-----CCCCCCCcccchhhhHHHH
Q 002691 594 HT-RIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKN-----SEVSGDGVLFARDELLVEE 667 (892)
Q Consensus 594 ~~-~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 667 (892)
+| .+..+|..+.++++|+.|++++|..+..+|.+ + ++++|+.|++.+|..... .++....+... ....+..
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n-~i~~lP~ 742 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET-AIEEFPS 742 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCC-ccccccc
Confidence 97 67789999999999999999999888999985 3 788999998886532210 00000000000 0000111
Q ss_pred hcCCCCCcEEEEEecchhhHHHh-----hccchhhccceeeEecCCCCCcccccccccccCCCCEEeEecCCCccceeec
Q 002691 668 LLGLKNLEVLEFTLTSSHVLQMF-----LTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVD 742 (892)
Q Consensus 668 L~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 742 (892)
...+++|+.|.+.......+... .......++|+.|+++++.....++. .+.++++|+.|+|++|..++.+|..
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCC
Confidence 11344555555443211100000 00011234677777777765555543 4667778888888888777766544
Q ss_pred cccccCCCCcCEEEEecCCCCCCC--------------------c-ccccCCCccEEEEecCcchhhhhccCcccCCccc
Q 002691 743 LRQSCVFNSLQKVQISLCSKLKDL--------------------T-FLVFAPNVKSIEIRSCLAMEEIISVQKFADFPET 801 (892)
Q Consensus 743 ~~~~~~l~~L~~L~L~~c~~l~~l--------------------~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~ 801 (892)
. .+++|+.|++++|..+..+ | ++..+++|+.|+|++|+.++.++.
T Consensus 822 ~----~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~---------- 887 (1153)
T PLN03210 822 I----NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL---------- 887 (1153)
T ss_pred C----CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc----------
Confidence 3 3666777777776555433 3 345678888888888888876643
Q ss_pred ccCCCCccCcccEeecCcccccccccCCC-------------CCCCCccEEeeccccccCCC
Q 002691 802 VRNNLNPFAKLQHLELVCLRNLNSIYWKP-------------LPFSQLKEMLVDDCYFLKKL 850 (892)
Q Consensus 802 ~~~~~~~~~~L~~L~L~~~~~L~~i~~~~-------------~~~~~L~~L~i~~C~~L~~l 850 (892)
....+++|+.|++.+|++|+.++... ..+|+...+.+.+|.+|..-
T Consensus 888 ---~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~ 946 (1153)
T PLN03210 888 ---NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQE 946 (1153)
T ss_pred ---ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCch
Confidence 45678999999999999998765421 12455566778888887643
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=1.6e-21 Score=206.48 Aligned_cols=348 Identities=21% Similarity=0.255 Sum_probs=231.5
Q ss_pred ccEEEEeCCCcccccc-ccCccceEEEEcccccccccccccCCCCcccEEEecCCccc--cccchhhcCCCCCcEEEecC
Q 002691 495 ENFLVYAGAGLCKAST-ISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLE--VISSRFFHYMPSLKVLKLSH 571 (892)
Q Consensus 495 ~~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~ 571 (892)
..|+......+..+|. +..+.++.+|++.+|++..+...+..++.||.+.+..|+++ .+|+. +-.+..|.+||||+
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecch
Confidence 4677777777776653 45678899999999999888777788999999999988654 56776 56789999999999
Q ss_pred ccccccChhhcCcCcCCEEeccCCCccccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCC
Q 002691 572 IQLTELPSRISKLVSLQHLDLSHTRIKELPGE-LEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSE 650 (892)
Q Consensus 572 ~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 650 (892)
|.+.+.|..+..-+++-.|+|++|+|..+|.. +-+|+.|-.|||++|. +..+|+. +.+|.+|++|.++.. .
T Consensus 113 NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~N------P 184 (1255)
T KOG0444|consen 113 NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNN------P 184 (1255)
T ss_pred hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCC------h
Confidence 99999999999999999999999999999876 4678899999999885 7889988 899999999988742 1
Q ss_pred CCCCCcccchhhhHHHHhcCCCCCcEEEEEecchhhHHHhhccchhhccceeeEecCCCCCcccccccccccCCCCEEeE
Q 002691 651 VSGDGVLFARDELLVEELLGLKNLEVLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRI 730 (892)
Q Consensus 651 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 730 (892)
+ ....+..|..+++|+.|.++...- ....++....-..+|..++++..+ +..++ ..+-++++|+.|++
T Consensus 185 L---------~hfQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~-Lp~vP-ecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 185 L---------NHFQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENN-LPIVP-ECLYKLRNLRRLNL 252 (1255)
T ss_pred h---------hHHHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccC-CCcch-HHHhhhhhhheecc
Confidence 1 222344555566666666664432 223333333334456666665432 22222 24455667777777
Q ss_pred ecCCCccceeeccccccCCCCcCEEEEecCCCCCCCc-ccccCCCccEEEEecCcch-hhhhc-------c---CcccCC
Q 002691 731 RDCEELEELKVDLRQSCVFNSLQKVQISLCSKLKDLT-FLVFAPNVKSIEIRSCLAM-EEIIS-------V---QKFADF 798 (892)
Q Consensus 731 ~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l-~~~~~-------~---~~~~~~ 798 (892)
++. .++++..... ...+|+.|+++.+ .++.+| .+..+++|+.|.+.++..- +.++. . ......
T Consensus 253 S~N-~iteL~~~~~---~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 253 SGN-KITELNMTEG---EWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred CcC-ceeeeeccHH---HHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 764 3443332221 2456777777766 556565 5556666666655543211 11110 0 001111
Q ss_pred cccccCCCCccCcccEeecCcccccccccCCCCCCCCccEEeeccccccCCCCCCCCccCCcceEEechHhh
Q 002691 799 PETVRNNLNPFAKLQHLELVCLRNLNSIYWKPLPFSQLKEMLVDDCYFLKKLPLDFNSAKERKIVIRGEEYW 870 (892)
Q Consensus 799 ~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~~~l~~~~~~~~~ 870 (892)
.+-+|..+..|++|+.|.|+ |+.|-.+|....-+|.|+.|++++.|+|.--|...... ..+.+...+-..
T Consensus 328 LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~-~~lefYNIDFSL 397 (1255)
T KOG0444|consen 328 LELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDAR-KKLEFYNIDFSL 397 (1255)
T ss_pred cccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCCCCcchhh-hcceeeecceeh
Confidence 12234567788899999986 56788888888888999999999999998766543322 344444444333
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-19 Score=191.91 Aligned_cols=309 Identities=18% Similarity=0.219 Sum_probs=164.6
Q ss_pred ccCccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccCh-hhcCcCcCCE
Q 002691 511 ISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPS-RISKLVSLQH 589 (892)
Q Consensus 511 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~ 589 (892)
+.++++++.+++..|.++.+|.......+|+.|+|.+|.+..+....+..++.||+||||.|.|+++|. ++..=.++++
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 345566667777777766666654555567777777776666666666666777777777776666643 3444456677
Q ss_pred EeccCCCccccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHHh
Q 002691 590 LDLSHTRIKELPG-ELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEEL 668 (892)
Q Consensus 590 L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L 668 (892)
|+|++|.|+.+-. .+..+.+|.+|.|+.|. +..+|...|++|++|+.|++..... .. .....+
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i------ri---------ve~ltF 241 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI------RI---------VEGLTF 241 (873)
T ss_pred EeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce------ee---------ehhhhh
Confidence 7777776665533 25556666667776664 5666666666667776666653111 00 001123
Q ss_pred cCCCCCcEEEEEecchhhHHHhhcc----------------------chhhccceeeEecCCCCCcccccccccccCCCC
Q 002691 669 LGLKNLEVLEFTLTSSHVLQMFLTS----------------------NELRRCSQALFLDGLKNSKWIDASQLAELKHLN 726 (892)
Q Consensus 669 ~~l~~L~~L~l~~~~~~~~~~~~~~----------------------~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 726 (892)
++|++|+.|.+..++...+..-... .--.+.|+.|+++... +..+...+...+++|+
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLK 320 (873)
T ss_pred cCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheeecchhhhcccce
Confidence 3444444444433333222211000 0001234444444322 2222223344445555
Q ss_pred EEeEecCCCccceeeccccccCCCCcCEEEEecCCCCCCCc--ccccCCCccEEEEecCcchhhhhccCcccCCcccccC
Q 002691 727 RLRIRDCEELEELKVDLRQSCVFNSLQKVQISLCSKLKDLT--FLVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRN 804 (892)
Q Consensus 727 ~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~ 804 (892)
.|+|++. .+..+++.... .++.|+.|.|+.+ ++..+. .+..+.+|++|+|+++.. .-.+.. . ..
T Consensus 321 ~LdLs~N-~i~~l~~~sf~--~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~l-s~~IED---a------a~ 386 (873)
T KOG4194|consen 321 ELDLSSN-RITRLDEGSFR--VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNEL-SWCIED---A------AV 386 (873)
T ss_pred eEecccc-ccccCChhHHH--HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeE-EEEEec---c------hh
Confidence 5555542 34444433332 3455555555554 333332 234556666666665422 111110 0 02
Q ss_pred CCCccCcccEeecCcccccccccCC-CCCCCCccEEeeccccccCCCCC
Q 002691 805 NLNPFAKLQHLELVCLRNLNSIYWK-PLPFSQLKEMLVDDCYFLKKLPL 852 (892)
Q Consensus 805 ~~~~~~~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~lP~ 852 (892)
.+.++|+|+.|.+.+ .+++.++.. ...+++|++|++.+-+ +.++-.
T Consensus 387 ~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~ 433 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQP 433 (873)
T ss_pred hhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecc
Confidence 355688899999988 478888753 3457889999888754 555533
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=1.1e-20 Score=200.42 Aligned_cols=327 Identities=18% Similarity=0.237 Sum_probs=252.8
Q ss_pred cccCccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCcccc--ccChhhcCcCcC
Q 002691 510 TISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLT--ELPSRISKLVSL 587 (892)
Q Consensus 510 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~lp~~i~~L~~L 587 (892)
+...++.++.|.+....+..+|..++.+.+|..|.+..|.+..+... ++.++.||.+++..|++. .+|..|..|..|
T Consensus 27 ~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 27 DVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred hHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccc
Confidence 34567789999999999999999999999999999999988877665 788999999999999877 589999999999
Q ss_pred CEEeccCCCccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHH
Q 002691 588 QHLDLSHTRIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEE 667 (892)
Q Consensus 588 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (892)
.+|||++|++++.|..+.+.+++-+|+|++|+ +..+|..++-+|+.|-.|+++. +.+. ..+..
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~------NrLe----------~LPPQ 168 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN------NRLE----------MLPPQ 168 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc------chhh----------hcCHH
Confidence 99999999999999999999999999999995 8999999999999999999873 3222 25677
Q ss_pred hcCCCCCcEEEEEecchhhHHHhhccchhhccceeeEecCCCCCcccccccccccCCCCEEeEecCCCccceeecccccc
Q 002691 668 LLGLKNLEVLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSC 747 (892)
Q Consensus 668 L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 747 (892)
+..|.+|++|.++++....++. .. ...+.+|+.|.+++......--+.++..+.+|..++++. +.+..+|....
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQL-rQ-LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly--- 242 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQL-RQ-LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLY--- 242 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHH-hc-CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHh---
Confidence 8889999999999887654331 11 112346777777776432211123677889999999975 56766555444
Q ss_pred CCCCcCEEEEecCCCCCCCc-ccccCCCccEEEEecCcchhhhhcc------------CcccCCcccccCCCCccCcccE
Q 002691 748 VFNSLQKVQISLCSKLKDLT-FLVFAPNVKSIEIRSCLAMEEIISV------------QKFADFPETVRNNLNPFAKLQH 814 (892)
Q Consensus 748 ~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~L~~ 814 (892)
.+++|+.|+|+++ .++.+. ..+.-.+|+.|+++.+ +++.++.. ....-..+++|..++.+.+|+.
T Consensus 243 ~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred hhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence 5899999999998 666665 4556689999999984 44444321 0111112356677888888998
Q ss_pred eecCcccccccccCCCCCCCCccEEeeccccccCCCCCCCCccCCcceEEe
Q 002691 815 LELVCLRNLNSIYWKPLPFSQLKEMLVDDCYFLKKLPLDFNSAKERKIVIR 865 (892)
Q Consensus 815 L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~~~l~~~~ 865 (892)
+...+ ++|+-.|.+.+.|+.|+.|.+ +|..|-+||..+.-+ +.+++.+
T Consensus 321 f~aan-N~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaIHlL-~~l~vLD 368 (1255)
T KOG0444|consen 321 FHAAN-NKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAIHLL-PDLKVLD 368 (1255)
T ss_pred HHhhc-cccccCchhhhhhHHHHHhcc-cccceeechhhhhhc-CCcceee
Confidence 88886 578888888888999999998 567899999877543 5555553
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=3.8e-19 Score=187.89 Aligned_cols=293 Identities=21% Similarity=0.310 Sum_probs=197.3
Q ss_pred CccceEEEEccccccccccc-ccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccCh-hhcCcCcCCEE
Q 002691 513 GWVKIRRLSLMENHIEDLSN-IYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPS-RISKLVSLQHL 590 (892)
Q Consensus 513 ~~~~l~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L 590 (892)
-++.+|.|+++.|.+..++. .|+.-.+++.|+|++|.++.+..+.|.++.+|-+|.|+.|.++.+|. .|.+|++|+.|
T Consensus 147 ~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 147 ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 34567888888888887753 35666788888888888888877778888888888888888888875 45558888888
Q ss_pred eccCCCcccc-chhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHHhc
Q 002691 591 DLSHTRIKEL-PGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEELL 669 (892)
Q Consensus 591 ~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 669 (892)
+|..|.|+.. ...+..|++|+.|.+..|. +..+.+++|..+.++++|++.. +.+... .-..+-
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~------N~l~~v---------n~g~lf 290 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLET------NRLQAV---------NEGWLF 290 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeeccc------chhhhh---------hccccc
Confidence 8888877755 4567778888888888775 6777778888888888888863 222111 122455
Q ss_pred CCCCCcEEEEEecchhhHHHhhccchhhccceeeEecCCCCCcccccccccccCCCCEEeEecCCCccceeeccccccCC
Q 002691 670 GLKNLEVLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVF 749 (892)
Q Consensus 670 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l 749 (892)
+|+.|+.|+++.+.+..+.. ..-++...|+.|+|+... ++.++..++..+..|++|.|++. .+..+....+. .+
T Consensus 291 gLt~L~~L~lS~NaI~rih~--d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~--~l 364 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHI--DSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFV--GL 364 (873)
T ss_pred ccchhhhhccchhhhheeec--chhhhcccceeEeccccc-cccCChhHHHHHHHhhhhccccc-chHHHHhhHHH--Hh
Confidence 67888888888776654321 222345678888887754 55666567777888888888774 45555444443 57
Q ss_pred CCcCEEEEecCC---CCCCCc-ccccCCCccEEEEecCcchhhhhccCcccCCcccccCCCCccCcccEeecCccccccc
Q 002691 750 NSLQKVQISLCS---KLKDLT-FLVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNPFAKLQHLELVCLRNLNS 825 (892)
Q Consensus 750 ~~L~~L~L~~c~---~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 825 (892)
++|++|+|+.+. -+++-. .+..+++|++|.+.+ ++++.++. ..+.+|++|++|+|.+.+ +.+
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k------------rAfsgl~~LE~LdL~~Na-iaS 430 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK------------RAFSGLEALEHLDLGDNA-IAS 430 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecch------------hhhccCcccceecCCCCc-cee
Confidence 788888877653 122211 344688888888887 46666654 356678888888887753 333
Q ss_pred ccCC-CCCCCCccEEeec
Q 002691 826 IYWK-PLPFSQLKEMLVD 842 (892)
Q Consensus 826 i~~~-~~~~~~L~~L~i~ 842 (892)
+-.. ...+ .|++|.+.
T Consensus 431 Iq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 431 IQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ecccccccc-hhhhhhhc
Confidence 3222 2223 55555443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=1.8e-18 Score=175.13 Aligned_cols=314 Identities=21% Similarity=0.272 Sum_probs=186.0
Q ss_pred ccccCccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCC
Q 002691 509 STISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQ 588 (892)
Q Consensus 509 ~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~ 588 (892)
+...++.++..|++..|.+..+| .|++|..|..|.+..|.++.+|....+++.+|.+|||+.|+++++|..++.|.+|.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 44567778888899999999888 55999999999999999888888878899999999999999999999999999999
Q ss_pred EEeccCCCccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCc--ccEEEeeccccccCCCCCCCCcccchhhhHHH
Q 002691 589 HLDLSHTRIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSM--LHVLRMFSSLYFKNSEVSGDGVLFARDELLVE 666 (892)
Q Consensus 589 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (892)
+||+++|.|+.+|.+++++ .|+.|-+.||+ +..+-.+++++=+. |++|+-..........-++.+-..........
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~ 356 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP 356 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc
Confidence 9999999999999999999 99999999987 55555554443321 34443211000000000000000000011112
Q ss_pred HhcCCCCCcEEEEEecchhhHHHhhccchhhccceeeEecCCC-----------------------CCcccccccccccC
Q 002691 667 ELLGLKNLEVLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLK-----------------------NSKWIDASQLAELK 723 (892)
Q Consensus 667 ~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----------------------~~~~~~~~~l~~l~ 723 (892)
....+.+.+.|+++....+.++.-.....-..-..+.+++... ...+++ ..+..++
T Consensus 357 ~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~-~~l~~l~ 435 (565)
T KOG0472|consen 357 DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVP-LELSQLQ 435 (565)
T ss_pred chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccch-HHHHhhh
Confidence 2223344555555433332222111000000112233333221 111111 1334455
Q ss_pred CCCEEeEecCCCccceeeccccccCCCCcCEEEEecCCCCCCCcccc-cCCCccEEEEecCcchhhhhccCcccCCcccc
Q 002691 724 HLNRLRIRDCEELEELKVDLRQSCVFNSLQKVQISLCSKLKDLTFLV-FAPNVKSIEIRSCLAMEEIISVQKFADFPETV 802 (892)
Q Consensus 724 ~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~-~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~ 802 (892)
+|..|++++. -+.++|.+... +..|+.|+|+.+ +.+.+|... .+..|+.+-.++ .++..+.+
T Consensus 436 kLt~L~L~NN-~Ln~LP~e~~~---lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~----------- 498 (565)
T KOG0472|consen 436 KLTFLDLSNN-LLNDLPEEMGS---LVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDP----------- 498 (565)
T ss_pred cceeeecccc-hhhhcchhhhh---hhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccCh-----------
Confidence 5555555552 34444444432 444555665555 444444222 222233322222 23333322
Q ss_pred cCCCCccCcccEeecCcccccccccCCCCCCCCccEEeecccc
Q 002691 803 RNNLNPFAKLQHLELVCLRNLNSIYWKPLPFSQLKEMLVDDCY 845 (892)
Q Consensus 803 ~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~ 845 (892)
..+..+.+|.+|++.+ ..+..+|...+.|.+|++|+++|-|
T Consensus 499 -~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 499 -SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 2467789999999987 5889999989999999999999976
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=6.8e-17 Score=163.87 Aligned_cols=244 Identities=25% Similarity=0.330 Sum_probs=178.1
Q ss_pred ccCccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCEE
Q 002691 511 ISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHL 590 (892)
Q Consensus 511 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 590 (892)
...+..+.++.+++|....+|..++.+..+..++.+.|++..+|+. +.++..|+.|+.++|.+.++|++++.+..|..|
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSNELKELPDSIGRLLDLEDL 142 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-HhhhhhhhhhhccccceeecCchHHHHhhhhhh
Confidence 3445567778888888888877777788888888888888777766 677778888888888888888888888888888
Q ss_pred eccCCCccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHHhcC
Q 002691 591 DLSHTRIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEELLG 670 (892)
Q Consensus 591 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 670 (892)
+..+|++..+|..+.++.+|..|++.+|. +..+|+..+. ++.|++|+... +. -...++++++
T Consensus 143 ~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~------N~----------L~tlP~~lg~ 204 (565)
T KOG0472|consen 143 DATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNS------NL----------LETLPPELGG 204 (565)
T ss_pred hccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccch------hh----------hhcCChhhcc
Confidence 88888888888888888888888888875 5667776444 88888887652 11 1225677777
Q ss_pred CCCCcEEEEEecchhhHHHhhccchhhccceeeEecCCCCCcccccccccccCCCCEEeEecCCCccceeeccccccCCC
Q 002691 671 LKNLEVLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFN 750 (892)
Q Consensus 671 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~ 750 (892)
+..|..|++..+....++.+.+ +..|+.|+++... ++.++.....++++|..|++++ +.++++|.+.. .+.
T Consensus 205 l~~L~~LyL~~Nki~~lPef~g----cs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~c---lLr 275 (565)
T KOG0472|consen 205 LESLELLYLRRNKIRFLPEFPG----CSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEIC---LLR 275 (565)
T ss_pred hhhhHHHHhhhcccccCCCCCc----cHHHHHHHhcccH-HHhhHHHHhcccccceeeeccc-cccccCchHHH---Hhh
Confidence 8888777777666655554433 2345555554432 3334434556788899999988 46777777765 488
Q ss_pred CcCEEEEecCCCCCCCc-ccccCCCccEEEEecCc
Q 002691 751 SLQKVQISLCSKLKDLT-FLVFAPNVKSIEIRSCL 784 (892)
Q Consensus 751 ~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~ 784 (892)
+|..|+++++ .++.+| .++++ .|+.|.+.|++
T Consensus 276 sL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 276 SLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 9999999998 677776 77888 89999998876
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.49 E-value=2.4e-14 Score=169.65 Aligned_cols=337 Identities=22% Similarity=0.239 Sum_probs=205.6
Q ss_pred cEEEEeCCCccccccccCccceEEEEccccc--cccccc-ccCCCCcccEEEecCC-ccccccchhhcCCCCCcEEEecC
Q 002691 496 NFLVYAGAGLCKASTISGWVKIRRLSLMENH--IEDLSN-IYPRCPHLVTLFLNNN-KLEVISSRFFHYMPSLKVLKLSH 571 (892)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~l~~-~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~ 571 (892)
+.++.........+.....++++.|-+..|. +..++. .|..++.|++|++++| .+..+|.. ++++-+||||++++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccC
Confidence 3444555555555555566689999998885 555544 3688999999999988 56666655 89999999999999
Q ss_pred ccccccChhhcCcCcCCEEeccCCC-ccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCC
Q 002691 572 IQLTELPSRISKLVSLQHLDLSHTR-IKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSE 650 (892)
Q Consensus 572 ~~l~~lp~~i~~L~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 650 (892)
+.+..+|.++++|+.|.+||+..+. ...+|.....|++|++|.+.... . ......++.+.+|++|........
T Consensus 605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~-~~~~~~l~el~~Le~L~~ls~~~~---- 678 (889)
T KOG4658|consen 605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-L-SNDKLLLKELENLEHLENLSITIS---- 678 (889)
T ss_pred CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-c-ccchhhHHhhhcccchhhheeecc----
Confidence 9999999999999999999999984 45566666679999999998764 1 111222555566666654432111
Q ss_pred CCCCCcccchhhhHHHHhcCCCCCcEEEEEec-chhhHHHhhccchhhccceeeEecCCCCCcccc----ccccc-ccCC
Q 002691 651 VSGDGVLFARDELLVEELLGLKNLEVLEFTLT-SSHVLQMFLTSNELRRCSQALFLDGLKNSKWID----ASQLA-ELKH 724 (892)
Q Consensus 651 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~l~-~l~~ 724 (892)
+...+..+..++.|..+..... ................+|+.|.+.+|...+... ..... .+++
T Consensus 679 ----------s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 679 ----------SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred ----------hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 1123344444444443322211 001122222333345678888888887643211 00111 1456
Q ss_pred CCEEeEecCCCccceeeccccccCCCCcCEEEEecCCCCCCCc-ccccCCCccEEEEecCcchhhhhccCcccCCccccc
Q 002691 725 LNRLRIRDCEELEELKVDLRQSCVFNSLQKVQISLCSKLKDLT-FLVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVR 803 (892)
Q Consensus 725 L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~ 803 (892)
+..+.+.+|..... +.|.. ..++|+.|++..|+.++++. ....+..++.+.+.. ..+..... .
T Consensus 749 l~~~~~~~~~~~r~--l~~~~--f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~~~l~~-----------~ 812 (889)
T KOG4658|consen 749 LSKVSILNCHMLRD--LTWLL--FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKLEGLRM-----------L 812 (889)
T ss_pred HHHHHhhccccccc--cchhh--ccCcccEEEEecccccccCCCHHHHhhhcccEEecc-ccccccee-----------e
Confidence 77777888877774 34442 57899999999998887654 333444444433322 12211100 0
Q ss_pred CCCCccCcccEeecCcccccccccCCC----CCCCCccEEeeccc-cccCCCCCCCCccCCcceEEechHhhh
Q 002691 804 NNLNPFAKLQHLELVCLRNLNSIYWKP----LPFSQLKEMLVDDC-YFLKKLPLDFNSAKERKIVIRGEEYWW 871 (892)
Q Consensus 804 ~~~~~~~~L~~L~L~~~~~L~~i~~~~----~~~~~L~~L~i~~C-~~L~~lP~~~~~~~~~l~~~~~~~~~~ 871 (892)
...+.||++..+.+... .++.+.... ..+|.+.++.+.+| +++..+|.... ++.++.+.+-.
T Consensus 813 ~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~-----~~~v~~~~~~~ 879 (889)
T KOG4658|consen 813 CSLGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEW-----LEGVYWEDELT 879 (889)
T ss_pred ecCCCCceeEecccCcc-chhheehhcCcccccCccccccceeccccceeecCCccc-----eeeEEehhhhh
Confidence 12334444444444432 233333332 34688999999997 99999998633 45555555443
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=3.9e-16 Score=140.14 Aligned_cols=164 Identities=23% Similarity=0.379 Sum_probs=140.9
Q ss_pred cccccccCccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcC
Q 002691 506 CKASTISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLV 585 (892)
Q Consensus 506 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~ 585 (892)
.+++.+..++.+.+|.+++|.+..+|..+..+.+|++|++++|.++.+|.. ++.++.|+.|+++-|.+..+|..||.++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCc
Confidence 345556677889999999999999988889999999999999999999887 8999999999999999999999999999
Q ss_pred cCCEEeccCCCcc--ccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhh
Q 002691 586 SLQHLDLSHTRIK--ELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDEL 663 (892)
Q Consensus 586 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 663 (892)
-|+.|||.+|++. .+|-.+..++.|+.|++++|. .+-+|++ ++++++||.|.+.. +++ ..
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrd------ndl----------l~ 164 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRD------NDL----------LS 164 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeecc------Cch----------hh
Confidence 9999999999876 799999999999999999996 5788888 89999999998873 222 12
Q ss_pred HHHHhcCCCCCcEEEEEecchhhHH
Q 002691 664 LVEELLGLKNLEVLEFTLTSSHVLQ 688 (892)
Q Consensus 664 ~~~~L~~l~~L~~L~l~~~~~~~~~ 688 (892)
.+.+++.++.|++|+|.++....++
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeecC
Confidence 5778899999999999877655443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=6.5e-13 Score=154.06 Aligned_cols=252 Identities=20% Similarity=0.220 Sum_probs=163.2
Q ss_pred cEEEEeCCCccccccccCccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCcccc
Q 002691 496 NFLVYAGAGLCKASTISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLT 575 (892)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 575 (892)
..+.....++..+|.. -..+++.|++.+|.+..+|.. +++|++|++++|.++.+|.. .++|+.|++++|.++
T Consensus 204 ~~LdLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 204 AVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLT 275 (788)
T ss_pred cEEEcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc----ccccceeeccCCchh
Confidence 3444444455555442 124788889998888888753 57889999999988877642 467888999999888
Q ss_pred ccChhhcCcCcCCEEeccCCCccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCC
Q 002691 576 ELPSRISKLVSLQHLDLSHTRIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDG 655 (892)
Q Consensus 576 ~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 655 (892)
.+|... .+|+.|++++|+++.+|.. +++|+.|++++|. +..+|.. . .+|+.|.+.. +.+..
T Consensus 276 ~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~------N~L~~-- 336 (788)
T PRK15387 276 HLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYN------NQLTS-- 336 (788)
T ss_pred hhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---cccccccccc------Ccccc--
Confidence 887633 5688889999988888863 4789999998885 5666652 2 3456666542 22222
Q ss_pred cccchhhhHHHHhcCC-CCCcEEEEEecchhhHHHhhccchhhccceeeEecCCCCCcccccccccccCCCCEEeEecCC
Q 002691 656 VLFARDELLVEELLGL-KNLEVLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRIRDCE 734 (892)
Q Consensus 656 ~~~~~~~~~~~~L~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 734 (892)
+..+ .+|+.|+++.+....++.. ..+|+.|.+.++. +..++ .+ +.+|+.|+++++
T Consensus 337 ------------LP~lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~-L~~LP--~l--~~~L~~LdLs~N- 392 (788)
T PRK15387 337 ------------LPTLPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNR-LTSLP--AL--PSGLKELIVSGN- 392 (788)
T ss_pred ------------ccccccccceEecCCCccCCCCCC------Ccccceehhhccc-cccCc--cc--ccccceEEecCC-
Confidence 1111 4688888887766554432 2356777776543 22222 11 357888888775
Q ss_pred CccceeeccccccCCCCcCEEEEecCCCCCCCcccccCCCccEEEEecCcchhhhhccCcccCCcccccCCCCccCcccE
Q 002691 735 ELEELKVDLRQSCVFNSLQKVQISLCSKLKDLTFLVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNPFAKLQH 814 (892)
Q Consensus 735 ~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 814 (892)
.+..+|. .+++|+.|+++++ .+..+|.+ +.+|+.|+++++ .++.++ ..+..+++|+.
T Consensus 393 ~Lt~LP~------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~N-qLt~LP-------------~sl~~L~~L~~ 449 (788)
T PRK15387 393 RLTSLPV------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRN-QLTRLP-------------ESLIHLSSETT 449 (788)
T ss_pred cccCCCC------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccC-cccccC-------------hHHhhccCCCe
Confidence 4554432 2467888888887 56666642 356777888774 344443 24566788888
Q ss_pred eecCccc
Q 002691 815 LELVCLR 821 (892)
Q Consensus 815 L~L~~~~ 821 (892)
|+|++++
T Consensus 450 LdLs~N~ 456 (788)
T PRK15387 450 VNLEGNP 456 (788)
T ss_pred EECCCCC
Confidence 8888764
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=9.6e-15 Score=163.49 Aligned_cols=252 Identities=21% Similarity=0.274 Sum_probs=119.4
Q ss_pred CcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCEEeccCCCccccchhhhcCCCCCEEecCC
Q 002691 538 PHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPGELEILVNLKCLNLNH 617 (892)
Q Consensus 538 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~ 617 (892)
++|+.|..+.|.+..+... ....+|++++++++.++.+|+.++.+.+|+.+++.+|.+..+|..+...++|+.|.+.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence 4455555555544422221 22345566666666666666556666666666666666666666666666666666655
Q ss_pred CcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccch-hhhHHHHh-------c--------CCCCCcEEEEEe
Q 002691 618 TMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFAR-DELLVEEL-------L--------GLKNLEVLEFTL 681 (892)
Q Consensus 618 ~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L-------~--------~l~~L~~L~l~~ 681 (892)
|. ++.+|+. ..+++.|++|++.. +++......+-. ....+..+ . .+..|+.|.+..
T Consensus 297 ne-l~yip~~-le~~~sL~tLdL~~------N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 297 NE-LEYIPPF-LEGLKSLRTLDLQS------NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred hh-hhhCCCc-ccccceeeeeeehh------ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 53 4555553 44556666665542 111111000000 00000000 0 011122222222
Q ss_pred cchh--hHHHhhccchhhccceeeEecCCCCCcccccccccccCCCCEEeEecCCCccceeeccccccCCCCcCEEEEec
Q 002691 682 TSSH--VLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSLQKVQISL 759 (892)
Q Consensus 682 ~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~L~~ 759 (892)
+... .++.+ ..+.+|+.|.|.... +..++.+.+.++..|+.|.++| +.++.++.... .++.|+.|...+
T Consensus 369 N~Ltd~c~p~l----~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva---~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 369 NHLTDSCFPVL----VNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSG-NKLTTLPDTVA---NLGRLHTLRAHS 439 (1081)
T ss_pred Ccccccchhhh----ccccceeeeeecccc-cccCCHHHHhchHHhHHHhccc-chhhhhhHHHH---hhhhhHHHhhcC
Confidence 2111 11111 122356666665543 3444444555666666666666 35555554333 356666666555
Q ss_pred CCCCCCCcccccCCCccEEEEecCcchhhhhccCcccCCcccccCCCCccCcccEeecCcccc
Q 002691 760 CSKLKDLTFLVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNPFAKLQHLELVCLRN 822 (892)
Q Consensus 760 c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 822 (892)
+ .+..+|.+..++.|+.++|+. +.++.+.. +... .-|+|++|++++.+.
T Consensus 440 N-~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l-----------~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 440 N-QLLSFPELAQLPQLKVLDLSC-NNLSEVTL-----------PEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred C-ceeechhhhhcCcceEEeccc-chhhhhhh-----------hhhC-CCcccceeeccCCcc
Confidence 4 455666666667777777664 34443321 0111 116677777766554
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=1.9e-12 Score=150.19 Aligned_cols=255 Identities=19% Similarity=0.167 Sum_probs=187.2
Q ss_pred ceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCEEeccCC
Q 002691 516 KIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHT 595 (892)
Q Consensus 516 ~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~ 595 (892)
+-..|+++.+.+..+|..+. ++|+.|++.+|.++.+|.. +++|++|++++|.++.+|.. .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC----CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 35578999999999988654 5899999999999888752 68999999999999999864 468999999999
Q ss_pred CccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHHhcCCCCCc
Q 002691 596 RIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEELLGLKNLE 675 (892)
Q Consensus 596 ~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 675 (892)
.++.+|.. +.+|+.|++++|. +..+|. .+++|+.|+++. |.+... .. ...+|+
T Consensus 273 ~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~----~p~~L~~LdLS~------N~L~~L-----------p~--lp~~L~ 325 (788)
T PRK15387 273 PLTHLPAL---PSGLCKLWIFGNQ-LTSLPV----LPPGLQELSVSD------NQLASL-----------PA--LPSELC 325 (788)
T ss_pred chhhhhhc---hhhcCEEECcCCc-cccccc----cccccceeECCC------CccccC-----------CC--Cccccc
Confidence 99998863 3678999999995 677875 247899999874 333321 00 123567
Q ss_pred EEEEEecchhhHHHhhccchhhccceeeEecCCCCCcccccccccccCCCCEEeEecCCCccceeeccccccCCCCcCEE
Q 002691 676 VLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSLQKV 755 (892)
Q Consensus 676 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L 755 (892)
.|.++.+....++.+ ...|+.|+++++. ++.++. + ..+|+.|+++++ .+..+|. .+.+|+.|
T Consensus 326 ~L~Ls~N~L~~LP~l------p~~Lq~LdLS~N~-Ls~LP~--l--p~~L~~L~Ls~N-~L~~LP~------l~~~L~~L 387 (788)
T PRK15387 326 KLWAYNNQLTSLPTL------PSGLQELSVSDNQ-LASLPT--L--PSELYKLWAYNN-RLTSLPA------LPSGLKEL 387 (788)
T ss_pred ccccccCcccccccc------ccccceEecCCCc-cCCCCC--C--Ccccceehhhcc-ccccCcc------cccccceE
Confidence 777777666554432 2478999998754 343331 1 357888888874 4555442 24689999
Q ss_pred EEecCCCCCCCcccccCCCccEEEEecCcchhhhhccCcccCCcccccCCCCccCcccEeecCcccccccccCCCCCCCC
Q 002691 756 QISLCSKLKDLTFLVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNPFAKLQHLELVCLRNLNSIYWKPLPFSQ 835 (892)
Q Consensus 756 ~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~ 835 (892)
+++++ .+..+|.. .++|+.|+++++. +..++. .+.+|+.|++.++ +++.+|.....+++
T Consensus 388 dLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~----------------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~ 446 (788)
T PRK15387 388 IVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM----------------LPSGLLSLSVYRN-QLTRLPESLIHLSS 446 (788)
T ss_pred EecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc----------------chhhhhhhhhccC-cccccChHHhhccC
Confidence 99998 67777643 4689999999964 443321 2357888999874 68888877778899
Q ss_pred ccEEeecccc
Q 002691 836 LKEMLVDDCY 845 (892)
Q Consensus 836 L~~L~i~~C~ 845 (892)
|+.|++++++
T Consensus 447 L~~LdLs~N~ 456 (788)
T PRK15387 447 ETTVNLEGNP 456 (788)
T ss_pred CCeEECCCCC
Confidence 9999999876
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=8.1e-13 Score=154.41 Aligned_cols=246 Identities=19% Similarity=0.239 Sum_probs=117.0
Q ss_pred EEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCEEeccCCCc
Q 002691 518 RRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRI 597 (892)
Q Consensus 518 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i 597 (892)
..|.+.++.+..+|..+. ++|+.|++++|.++.+|...+ .+|++|++++|.++.+|..+. .+|+.|++++|++
T Consensus 181 ~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 181 TELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred eEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 445555555555554322 356666666666655554422 356666666666666655443 3566666666666
Q ss_pred cccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHHhcCCCCCcEE
Q 002691 598 KELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEELLGLKNLEVL 677 (892)
Q Consensus 598 ~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L 677 (892)
..+|..+. .+|+.|++++|. +..+|.. + ..+|+.|+++. +.+... +..+ .++|+.|
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l--~~sL~~L~Ls~------N~Lt~L----------P~~l--p~sL~~L 309 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNK-ISCLPEN-L--PEELRYLSVYD------NSIRTL----------PAHL--PSGITHL 309 (754)
T ss_pred CcCChhHh--CCCCEEECcCCc-cCccccc-c--CCCCcEEECCC------CccccC----------cccc--hhhHHHH
Confidence 66655443 356666666553 4455543 2 13555555542 112111 0000 0134444
Q ss_pred EEEecchhhHHHhhccchhhccceeeEecCCCCCcccccccccccCCCCEEeEecCCCccceeeccccccCCCCcCEEEE
Q 002691 678 EFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSLQKVQI 757 (892)
Q Consensus 678 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~L 757 (892)
+++.+....++. ....+|+.|.+.++. ++.++. .+ +++|+.|++++|. +..+|..+ +++|+.|+|
T Consensus 310 ~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~-Lt~LP~-~l--~~sL~~L~Ls~N~-L~~LP~~l-----p~~L~~LdL 374 (754)
T PRK15370 310 NVQSNSLTALPE-----TLPPGLKTLEAGENA-LTSLPA-SL--PPELQVLDVSKNQ-ITVLPETL-----PPTITTLDV 374 (754)
T ss_pred HhcCCccccCCc-----cccccceeccccCCc-cccCCh-hh--cCcccEEECCCCC-CCcCChhh-----cCCcCEEEC
Confidence 444433322211 112355666665543 222221 12 2467777776653 44333221 356777777
Q ss_pred ecCCCCCCCcccccCCCccEEEEecCcchhhhhccCcccCCcccccCCCCccCcccEeecCccc
Q 002691 758 SLCSKLKDLTFLVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNPFAKLQHLELVCLR 821 (892)
Q Consensus 758 ~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 821 (892)
++| .+..+|.- -.++|+.|++++|. +..++. .++.....+|++..|.+.+.+
T Consensus 375 s~N-~Lt~LP~~-l~~sL~~LdLs~N~-L~~LP~---------sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 375 SRN-ALTNLPEN-LPAALQIMQASRNN-LVRLPE---------SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCC-cCCCCCHh-HHHHHHHHhhccCC-cccCch---------hHHHHhhcCCCccEEEeeCCC
Confidence 776 45555421 11356666666642 333322 122233345666666666543
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.37 E-value=1e-13 Score=155.34 Aligned_cols=229 Identities=22% Similarity=0.266 Sum_probs=143.9
Q ss_pred cceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCEEeccC
Q 002691 515 VKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSH 594 (892)
Q Consensus 515 ~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 594 (892)
-++.+|++++|.+...|..+..+++|+.|.++.|.+...|.. ..+|.+|++|+|.+|.+..+|.++..+++|++|++++
T Consensus 45 v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 358889999999888888888889999999999988887754 7889999999999999999999999999999999999
Q ss_pred CCccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHHhcCCCCC
Q 002691 595 TRIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEELLGLKNL 674 (892)
Q Consensus 595 ~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 674 (892)
|.+..+|..+..++.+..+..++|..+..++.. . .+.+++... .+ ....+.++..+++
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~-----~-ik~~~l~~n------~l---------~~~~~~~i~~l~~- 181 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT-----S-IKKLDLRLN------VL---------GGSFLIDIYNLTH- 181 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhccc-----c-chhhhhhhh------hc---------ccchhcchhhhhe-
Confidence 999999988888888888888888434444331 1 333333311 00 1123334444444
Q ss_pred cEEEEEecchhhHHHhhccchhhccceeeEecCCCCCcccccccccccCCCCEEeEecCCCccceeeccccccCCCCcCE
Q 002691 675 EVLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSLQK 754 (892)
Q Consensus 675 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~ 754 (892)
.|++..+....... .....|+.|...... +..+. -.-++|+.|+...|...+ +... +...+|+.
T Consensus 182 -~ldLr~N~~~~~dl-----s~~~~l~~l~c~rn~-ls~l~----~~g~~l~~L~a~~n~l~~-~~~~----p~p~nl~~ 245 (1081)
T KOG0618|consen 182 -QLDLRYNEMEVLDL-----SNLANLEVLHCERNQ-LSELE----ISGPSLTALYADHNPLTT-LDVH----PVPLNLQY 245 (1081)
T ss_pred -eeecccchhhhhhh-----hhccchhhhhhhhcc-cceEE----ecCcchheeeeccCccee-eccc----ccccccee
Confidence 45555444331110 001122222222111 11110 012456666666654331 1111 23567777
Q ss_pred EEEecCCCCCCCc-ccccCCCccEEEEecC
Q 002691 755 VQISLCSKLKDLT-FLVFAPNVKSIEIRSC 783 (892)
Q Consensus 755 L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c 783 (892)
++++.. ++..+| |++.+++|+.|.+.++
T Consensus 246 ~dis~n-~l~~lp~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 246 LDISHN-NLSNLPEWIGACANLEALNANHN 274 (1081)
T ss_pred eecchh-hhhcchHHHHhcccceEecccch
Confidence 777776 555555 6677777777777664
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=3.5e-12 Score=149.19 Aligned_cols=236 Identities=25% Similarity=0.252 Sum_probs=170.7
Q ss_pred CCCccccccccCccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhh
Q 002691 502 GAGLCKASTISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRI 581 (892)
Q Consensus 502 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i 581 (892)
+.++..+|.. -.+.++.|++++|.+..+|..+. ++|++|++++|.++.+|... ..+|+.|+|++|.+..+|..+
T Consensus 187 ~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l 260 (754)
T PRK15370 187 ILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERL 260 (754)
T ss_pred CCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhH
Confidence 3344444431 13579999999999999987643 69999999999999887653 347999999999999999887
Q ss_pred cCcCcCCEEeccCCCccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchh
Q 002691 582 SKLVSLQHLDLSHTRIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARD 661 (892)
Q Consensus 582 ~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 661 (892)
. .+|++|++++|+++.+|..+. ++|++|++++|. +..+|.. + .++|+.|++.. +.+...
T Consensus 261 ~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~------N~Lt~L------- 319 (754)
T PRK15370 261 P--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQS------NSLTAL------- 319 (754)
T ss_pred h--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcC------CccccC-------
Confidence 5 589999999999999998664 589999999995 6778864 2 24677777763 222221
Q ss_pred hhHHHHhcCCCCCcEEEEEecchhhHHHhhccchhhccceeeEecCCCCCcccccccccccCCCCEEeEecCCCccceee
Q 002691 662 ELLVEELLGLKNLEVLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKV 741 (892)
Q Consensus 662 ~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 741 (892)
+..+ .++|+.|.++.+....++.. +.++|+.|+++++. +..++. .+ .++|+.|+|++| .+..+|+
T Consensus 320 ---P~~l--~~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~-L~~LP~-~l--p~~L~~LdLs~N-~Lt~LP~ 384 (754)
T PRK15370 320 ---PETL--PPGLKTLEAGENALTSLPAS-----LPPELQVLDVSKNQ-ITVLPE-TL--PPTITTLDVSRN-ALTNLPE 384 (754)
T ss_pred ---Cccc--cccceeccccCCccccCChh-----hcCcccEEECCCCC-CCcCCh-hh--cCCcCEEECCCC-cCCCCCH
Confidence 1111 25788888887766554432 23589999999875 333332 23 368999999997 4666655
Q ss_pred ccccccCCCCcCEEEEecCCCCCCCc-c----cccCCCccEEEEecCcc
Q 002691 742 DLRQSCVFNSLQKVQISLCSKLKDLT-F----LVFAPNVKSIEIRSCLA 785 (892)
Q Consensus 742 ~~~~~~~l~~L~~L~L~~c~~l~~l~-~----l~~l~~L~~L~L~~c~~ 785 (892)
.. ..+|+.|++++| ++..+| . ...++++..|+|.+++.
T Consensus 385 ~l-----~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 385 NL-----PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hH-----HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 43 347999999998 666665 2 23568899999998753
No 21
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.32 E-value=1.8e-10 Score=143.62 Aligned_cols=288 Identities=16% Similarity=0.190 Sum_probs=177.9
Q ss_pred ccchHHHHHHHHHhhcccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-ccCHHHHHHHHHHhcCCCCCc
Q 002691 158 VVGLQSILEQVWSCLTAGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSK-DLQLEKIQETIGKKIGLFDGL 236 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~ 236 (892)
+|-|..-.+.+-.....+++.|.|++|.||||++....+.. . .++|+++.. +.+.......++..+......
T Consensus 16 ~~~R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~ 88 (903)
T PRK04841 16 TVVRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAALQQATNG 88 (903)
T ss_pred cCcchHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHHHHhcCc
Confidence 78888777777655448999999999999999999987543 1 589999864 445556666666665311100
Q ss_pred -----------ccCCChHHHHHHHHHHhc--cCcEEEEEecccccc--ccc-ccccccCCCCCCCcEEEEEecchhhccc
Q 002691 237 -----------WKNRSREEKALDIFKVLS--KKKFVLLLDDLWERV--DLT-KVGVPVPNSRNVASKVVFTTRLLDVCGL 300 (892)
Q Consensus 237 -----------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~--~~~-~~~~~l~~~~~~gs~IiiTTR~~~v~~~ 300 (892)
....+.......+...+. +.+++|||||+.... ... .+...+... ..+.++|||||...-...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~-~~~~~lv~~sR~~~~~~~ 167 (903)
T PRK04841 89 HCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ-PENLTLVVLSRNLPPLGI 167 (903)
T ss_pred ccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC-CCCeEEEEEeCCCCCCch
Confidence 001122333334444443 578999999995422 112 222222222 456788899997422111
Q ss_pred --c-cccceEEcc----CCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHH
Q 002691 301 --M-EAHKKFKVE----CLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGRAMAYKTTPEEWRYA 373 (892)
Q Consensus 301 --~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~ 373 (892)
+ ......++. +|+.+|+.++|....+.. --.+....|.+.|+|.|+++..++..++...... ...
T Consensus 168 ~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~ 239 (903)
T PRK04841 168 ANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP------IEAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDS 239 (903)
T ss_pred HhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhh
Confidence 1 112234555 999999999998765432 1245678899999999999999887775432100 000
Q ss_pred HHHHHhhhcccCCC-chhhhhhhh-hhhcCCCchhhhHHHhhhcCCCCCccccHHHHHHHHHhCCCCCCchHHHHHhhcc
Q 002691 374 IQVLRRAASEFAGL-GKEVYPLLK-FSYDSLFNDTIRSCLLYCSLYPEDYHISKSDLIDCWIGEGFLDENDRFEAQKQNQ 451 (892)
Q Consensus 374 l~~l~~~~~~~~~~-~~~i~~~l~-~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~ 451 (892)
...+ .+. ...+...+. -.++.||+ ..+..+...|+++ .++.+ +... +.. ...
T Consensus 240 ~~~~-------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~~-----l~~---------~~~ 293 (903)
T PRK04841 240 ARRL-------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIVR-----VTG---------EEN 293 (903)
T ss_pred hHhh-------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHHH-----HcC---------CCc
Confidence 1111 110 123444433 34789998 8999999999986 23322 2211 111 234
Q ss_pred hhHHHHHHHHhhccee-e--cCCceeehHHHHHHHHHHH
Q 002691 452 GYFTIGILVHACLLEE-V--EDDKVKMHDVIRDMTLWIA 487 (892)
Q Consensus 452 ~~~~l~~L~~~~ll~~-~--~~~~~~mHdlv~~~~~~i~ 487 (892)
....++.|.+.+++.. . ....|++|++++++.....
T Consensus 294 ~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 294 GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 4567999999998653 3 2347999999999988765
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-13 Score=123.98 Aligned_cols=131 Identities=28% Similarity=0.451 Sum_probs=120.6
Q ss_pred ccccCccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccc--cChhhcCcCc
Q 002691 509 STISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTE--LPSRISKLVS 586 (892)
Q Consensus 509 ~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--lp~~i~~L~~ 586 (892)
|.+..+.+++.|++.+|+++++|..++.+++|+.|++.-|.+..+|.+ |+.++-|++|||++|++.+ +|..|..+..
T Consensus 50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynnl~e~~lpgnff~m~t 128 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNNLNENSLPGNFFYMTT 128 (264)
T ss_pred CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccccccccCCcchhHHHH
Confidence 567788899999999999999999999999999999999988877776 8999999999999998874 8999999999
Q ss_pred CCEEeccCCCccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeec
Q 002691 587 LQHLDLSHTRIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFS 642 (892)
Q Consensus 587 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~ 642 (892)
|+-|.|+.|.+.-+|..+++|++||.|.+++|. +-.+|.. ++.++.|++|.+.+
T Consensus 129 lralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqg 182 (264)
T KOG0617|consen 129 LRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQG 182 (264)
T ss_pred HHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhccc
Confidence 999999999999999999999999999999996 6778998 99999999998874
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.24 E-value=1.1e-09 Score=122.51 Aligned_cols=238 Identities=16% Similarity=0.107 Sum_probs=144.4
Q ss_pred cccchHHHHHHHHHhhc-------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHh
Q 002691 157 LVVGLQSILEQVWSCLT-------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKK 229 (892)
Q Consensus 157 ~~vGr~~~~~~l~~~l~-------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (892)
.++||+++++++...+. ...+.|+|++|+|||++++.++++. ......-.++++.+....+...++..|+.+
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 38999999999999985 3568899999999999999999987 222223456777777777788899999999
Q ss_pred cCCCCCcccCCChHHHHHHHHHHhc--cCcEEEEEecccccc------cccccccccCCCCCCCcE--EEEEecchhhcc
Q 002691 230 IGLFDGLWKNRSREEKALDIFKVLS--KKKFVLLLDDLWERV------DLTKVGVPVPNSRNVASK--VVFTTRLLDVCG 299 (892)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~~~l~~~~~~gs~--IiiTTR~~~v~~ 299 (892)
+..........+.++....+.+.++ +++.+||||+++.-. .+..+...... ..+++ +|.++....+..
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~--~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE--YPGARIGVIGISSDLTFLY 187 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc--cCCCeEEEEEEECCcchhh
Confidence 8652211123345667777777775 456899999997632 12222221111 12333 566666544322
Q ss_pred ccc-------ccceEEccCCChHHHHHHHHHHhCC---cccCCCCChHHHHHHHHHHhCCchhHHHHHHHHH--h---cC
Q 002691 300 LME-------AHKKFKVECLSDEDAWQLFREKVGE---ETLNYHHDIPELAQMVAKECGGLPLALITIGRAM--A---YK 364 (892)
Q Consensus 300 ~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l--~---~~ 364 (892)
... ....+.+++++.++..+++..++.. ...-.+..++.+++......|..+.|+..+-.+. . +.
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 211 1246789999999999999987632 1111112223333333333566777777664322 1 11
Q ss_pred --CChHHHHHHHHHHHhhhcccCCCchhhhhhhhhhhcCCCchhhhHHH
Q 002691 365 --TTPEEWRYAIQVLRRAASEFAGLGKEVYPLLKFSYDSLFNDTIRSCL 411 (892)
Q Consensus 365 --~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf 411 (892)
-+.+....+++.... ....-.+..||. +.|..+
T Consensus 268 ~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L 302 (394)
T PRK00411 268 RKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLL 302 (394)
T ss_pred CCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHH
Confidence 245555555544321 223345778887 444433
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=2e-12 Score=131.80 Aligned_cols=295 Identities=16% Similarity=0.189 Sum_probs=171.3
Q ss_pred EEeCCCccccccccCccceEEEEcccccccccc-cccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecC-ccccc
Q 002691 499 VYAGAGLCKASTISGWVKIRRLSLMENHIEDLS-NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSH-IQLTE 576 (892)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~ 576 (892)
...+.++.++|.- -......+.+..|.+..+| ..|..+++||.|+|+.|.++.+.+..|.+++.|-.|-+-+ |.|+.
T Consensus 52 dCr~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EccCCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 3344455555431 1235667888888888885 5578888888888888888888888888888876665555 78888
Q ss_pred cChh-hcCcCcCCEEeccCCCccccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCC
Q 002691 577 LPSR-ISKLVSLQHLDLSHTRIKELPG-ELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGD 654 (892)
Q Consensus 577 lp~~-i~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 654 (892)
+|+. |++|..|+.|.+.-|.+..++. .+..|++|..|.+.+|. +..++.+.+..+.+++++.+.........++.+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchh
Confidence 8754 6888888888888888886554 47788888888888885 6778876677888888877764221111111110
Q ss_pred CcccchhhhHHHHhcCCCCCcEEEEEecchhhHHHhhccchhhccceee---EecCCCCCcccccccccccCCCCEEeEe
Q 002691 655 GVLFARDELLVEELLGLKNLEVLEFTLTSSHVLQMFLTSNELRRCSQAL---FLDGLKNSKWIDASQLAELKHLNRLRIR 731 (892)
Q Consensus 655 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L---~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 731 (892)
. ......+.+.++..-.....+........+ ...+..+++++ ..+.|.-....+...+..+++|++|+++
T Consensus 210 a---~~~a~~~ietsgarc~~p~rl~~~Ri~q~~----a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 210 A---DDLAMNPIETSGARCVSPYRLYYKRINQED----ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred h---hHHhhchhhcccceecchHHHHHHHhcccc----hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 0 000001111111111110000000000000 00001111111 0111211111122256778888888888
Q ss_pred cCCCccceeeccccccCCCCcCEEEEecCCCCCCCc--ccccCCCccEEEEecCcchhhhhccCcccCCcccccCCCCcc
Q 002691 732 DCEELEELKVDLRQSCVFNSLQKVQISLCSKLKDLT--FLVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNPF 809 (892)
Q Consensus 732 ~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~ 809 (892)
+. .++.+.+.|+. ....|+.|.|..+ +++.+. .+..+..|+.|+|.++ .++.+.+ ..+..+
T Consensus 283 nN-~i~~i~~~aFe--~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~------------~aF~~~ 345 (498)
T KOG4237|consen 283 NN-KITRIEDGAFE--GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAP------------GAFQTL 345 (498)
T ss_pred CC-ccchhhhhhhc--chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEec------------cccccc
Confidence 74 56666666665 5778888888877 565554 4567888888888884 4444322 234455
Q ss_pred CcccEeecCc
Q 002691 810 AKLQHLELVC 819 (892)
Q Consensus 810 ~~L~~L~L~~ 819 (892)
.+|.+|.+-.
T Consensus 346 ~~l~~l~l~~ 355 (498)
T KOG4237|consen 346 FSLSTLNLLS 355 (498)
T ss_pred ceeeeeehcc
Confidence 5566666543
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=2.1e-12 Score=131.66 Aligned_cols=286 Identities=18% Similarity=0.192 Sum_probs=174.4
Q ss_pred cccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCcccccc-ChhhcCcCcCCEEeccC-CCccc
Q 002691 522 LMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTEL-PSRISKLVSLQHLDLSH-TRIKE 599 (892)
Q Consensus 522 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~-~~i~~ 599 (892)
-++..+.++|..++ +.-..+.|..|.++.+|+..|+.+++||.||||+|.|+.+ |..|.+|..|-.|-+-+ |+|+.
T Consensus 53 Cr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 53 CRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred ccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 34445666665433 4567889999999999999999999999999999999987 88899999988888777 79999
Q ss_pred cchh-hhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHHhcCCCCCcEEE
Q 002691 600 LPGE-LEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEELLGLKNLEVLE 678 (892)
Q Consensus 600 lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 678 (892)
+|+. +..|..|+.|.+.-|. +..++.+.+..|++|..|.++... +... .-..++.+..++.+.
T Consensus 131 l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~------~q~i---------~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK------IQSI---------CKGTFQGLAAIKTLH 194 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh------hhhh---------ccccccchhccchHh
Confidence 9976 7889999999998885 678888889999999999887421 1110 001234455555554
Q ss_pred EEecch------hhHHHhh----ccchhhccceeeEecCCCCCcccccc-cccccCCCCEEeEecCCCccceeecccccc
Q 002691 679 FTLTSS------HVLQMFL----TSNELRRCSQALFLDGLKNSKWIDAS-QLAELKHLNRLRIRDCEELEELKVDLRQSC 747 (892)
Q Consensus 679 l~~~~~------~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 747 (892)
+..+.. ....... ...+...+.....+.... ...++.. ....+.++.+=-.+.|......|...+ .
T Consensus 195 lA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R-i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf--~ 271 (498)
T KOG4237|consen 195 LAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR-INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF--K 271 (498)
T ss_pred hhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH-hcccchhhhhhhHHhHHHhhccccCcCCcChHHHH--h
Confidence 432220 0000000 000000011100000000 0000000 001111111111222322222233333 2
Q ss_pred CCCCcCEEEEecCCCCCCCc--ccccCCCccEEEEecCcchhhhhccCcccCCcccccCCCCccCcccEeecCccccccc
Q 002691 748 VFNSLQKVQISLCSKLKDLT--FLVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNPFAKLQHLELVCLRNLNS 825 (892)
Q Consensus 748 ~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 825 (892)
.+++|++|+++++ .++.+. ++..+..|+.|.|.. ++++.+-. ..+.++..|++|+|.+. +++.
T Consensus 272 ~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~------------~~f~~ls~L~tL~L~~N-~it~ 336 (498)
T KOG4237|consen 272 KLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSS------------GMFQGLSGLKTLSLYDN-QITT 336 (498)
T ss_pred hcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHH------------HhhhccccceeeeecCC-eeEE
Confidence 6899999999998 666554 677888999999988 45665543 35667889999999984 5655
Q ss_pred ccC-CCCCCCCccEEeecc
Q 002691 826 IYW-KPLPFSQLKEMLVDD 843 (892)
Q Consensus 826 i~~-~~~~~~~L~~L~i~~ 843 (892)
+.. ....+.+|.+|++-.
T Consensus 337 ~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 337 VAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred Eecccccccceeeeeehcc
Confidence 433 333456777777653
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.15 E-value=1.8e-08 Score=111.35 Aligned_cols=291 Identities=14% Similarity=0.098 Sum_probs=163.9
Q ss_pred cccchHHHHHHHHHhhc-------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC---cEEEEEEeCCccCHHHHHHHH
Q 002691 157 LVVGLQSILEQVWSCLT-------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGF---DFVIWVVVSKDLQLEKIQETI 226 (892)
Q Consensus 157 ~~vGr~~~~~~l~~~l~-------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~~~~~~~~~~i 226 (892)
.++||++++++|...+. ...+.|+|++|+|||++++.+++......... -..+|+.+....+...++..|
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 38999999999999986 35799999999999999999998752111111 245777777777788899999
Q ss_pred HHhcC---CCCCcccCCChHHHHHHHHHHhc--cCcEEEEEecccccc-c----ccccccc--cCCCCCCCcEEEEEecc
Q 002691 227 GKKIG---LFDGLWKNRSREEKALDIFKVLS--KKKFVLLLDDLWERV-D----LTKVGVP--VPNSRNVASKVVFTTRL 294 (892)
Q Consensus 227 ~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~----~~~~~~~--l~~~~~~gs~IiiTTR~ 294 (892)
+.++. .... ....+..+....+.+.+. +++++||||+++.-. . +..+... .....+....+|.+|..
T Consensus 96 ~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 96 ANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 99883 2211 122344555566666663 567899999997641 1 1121111 01110123344555544
Q ss_pred hhhccccc-------ccceEEccCCChHHHHHHHHHHhCC--cccCCCCChHHHHHHHHHHhCCchhHH-HHHHHHH--h
Q 002691 295 LDVCGLME-------AHKKFKVECLSDEDAWQLFREKVGE--ETLNYHHDIPELAQMVAKECGGLPLAL-ITIGRAM--A 362 (892)
Q Consensus 295 ~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~~c~glPLai-~~~g~~l--~ 362 (892)
......+. ....+.+++.+.+|..+++..++.. .....+++..+....++....|.|-.+ ..+-.+. .
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 43211111 1246889999999999999988641 111123333445556777777887444 3322111 1
Q ss_pred --c---CCChHHHHHHHHHHHhhhcccCCCchhhhhhhhhhhcCCCchhhhHHHhhhcCC--CCCccccHHHHHHHHH--
Q 002691 363 --Y---KTTPEEWRYAIQVLRRAASEFAGLGKEVYPLLKFSYDSLFNDTIRSCLLYCSLY--PEDYHISKSDLIDCWI-- 433 (892)
Q Consensus 363 --~---~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~f--p~~~~i~~~~Li~~wi-- 433 (892)
. .-+.+..+.+.+.+.. ....-++..||. +.+..+..++.. .++..+...++...+-
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 1244444444443321 222345667876 555444433311 1333455555555321
Q ss_pred hCCC-CCCchHHHHHhhcchhHHHHHHHHhhcceee
Q 002691 434 GEGF-LDENDRFEAQKQNQGYFTIGILVHACLLEEV 468 (892)
Q Consensus 434 aeg~-i~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 468 (892)
++.+ +.+.+ ......++..|...+++...
T Consensus 321 ~~~~~~~~~~------~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDIGVDPLT------QRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhcCCCCCc------HHHHHHHHHHHHhcCCeEEE
Confidence 2211 12211 23446678888888888764
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.14 E-value=6.4e-09 Score=109.66 Aligned_cols=180 Identities=13% Similarity=0.167 Sum_probs=112.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
..++.|+|++|+||||+++.+++.. .. ... ..+|+ +....+..+++..|+..++.+.. ..+.......+.+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHH
Confidence 4589999999999999999999987 22 111 22333 33345778899999998876532 223333333443322
Q ss_pred -----ccCcEEEEEecccccc--cccccccc--cCCCCCCCcEEEEEecchhhcccc----------cccceEEccCCCh
Q 002691 254 -----SKKKFVLLLDDLWERV--DLTKVGVP--VPNSRNVASKVVFTTRLLDVCGLM----------EAHKKFKVECLSD 314 (892)
Q Consensus 254 -----~~kr~LlVlDdv~~~~--~~~~~~~~--l~~~~~~gs~IiiTTR~~~v~~~~----------~~~~~~~l~~L~~ 314 (892)
.+++.+||+||++... .++.+... +.........|++|.... ....+ .....+.+++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 5788999999998642 33333211 111102223445555432 11111 1133578999999
Q ss_pred HHHHHHHHHHhCCcccCC-CCChHHHHHHHHHHhCCchhHHHHHHHHH
Q 002691 315 EDAWQLFREKVGEETLNY-HHDIPELAQMVAKECGGLPLALITIGRAM 361 (892)
Q Consensus 315 ~ea~~Lf~~~a~~~~~~~-~~~~~~~~~~i~~~c~glPLai~~~g~~l 361 (892)
+|..+++...+....... ..-..+..+.|++.++|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999987764322111 12235788999999999999999988765
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.09 E-value=7.1e-10 Score=114.43 Aligned_cols=192 Identities=19% Similarity=0.177 Sum_probs=100.8
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHH---------
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQET--------- 225 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~--------- 225 (892)
|+||++++++|.+++. ...+.|+|+.|+|||+|++.+.+.. . ..-..++|+...+......+...
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~--~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-K--EKGYKVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T----EECCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-h--hcCCcEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 6899999999999988 5899999999999999999999986 2 21113444444333322211111
Q ss_pred ----HHHhcCCCCC-c---ccCCChHHHHHHHHHHhc--cCcEEEEEecccccc-ccc-------ccc---cccCCCCCC
Q 002691 226 ----IGKKIGLFDG-L---WKNRSREEKALDIFKVLS--KKKFVLLLDDLWERV-DLT-------KVG---VPVPNSRNV 284 (892)
Q Consensus 226 ----i~~~l~~~~~-~---~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~~-------~~~---~~l~~~~~~ 284 (892)
+...+..... . ............+.+.+. +++.+||+||+.... ... .+. ...... .+
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ-QN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-CC
Confidence 1111111000 0 011122333444444443 356999999996544 111 111 111122 33
Q ss_pred CcEEEEEecchhhcc--------cccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 285 ASKVVFTTRLLDVCG--------LMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 285 gs~IiiTTR~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
.+.| +++....+.. ..+....+.+++|+.+++++++...+... ... +.-++..++|+..+||.|..|..
T Consensus 157 ~~~v-~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIV-ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEE-EEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEE-EECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 4444 4444333321 12333458999999999999999875433 122 22355669999999999988754
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.05 E-value=2.1e-08 Score=113.26 Aligned_cols=299 Identities=16% Similarity=0.131 Sum_probs=192.1
Q ss_pred ccccCCCCcccchHHHHHHHHHhhcccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc-cCHHHHHHHHH
Q 002691 149 ADERPTEPLVVGLQSILEQVWSCLTAGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD-LQLEKIQETIG 227 (892)
Q Consensus 149 ~~~~~~~~~~vGr~~~~~~l~~~l~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~ 227 (892)
+.|.++.+ .|-|..-.+.+.+....+.+.|..+.|.|||||+....... ..-..+.|.+.... -++.....-++
T Consensus 13 ~~P~~~~~-~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 13 VRPVRPDN-YVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCCCccc-ccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHH
Confidence 33444444 67788888887777779999999999999999999998743 33467999998664 45677777777
Q ss_pred HhcCCCCCc-----------ccCCChHHHHHHHHHHhcc--CcEEEEEecccc---cccccccccccCCCCCCCcEEEEE
Q 002691 228 KKIGLFDGL-----------WKNRSREEKALDIFKVLSK--KKFVLLLDDLWE---RVDLTKVGVPVPNSRNVASKVVFT 291 (892)
Q Consensus 228 ~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~---~~~~~~~~~~l~~~~~~gs~IiiT 291 (892)
..++.-.+. .+..+.....+.+...+.. ++..+||||.-- +.--..+...+... ..+-..|||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~-P~~l~lvv~ 166 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA-PENLTLVVT 166 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC-CCCeEEEEE
Confidence 777522111 0222334455555555553 689999999742 21112222222333 567889999
Q ss_pred ecchhhccc---ccccceEEc----cCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcC
Q 002691 292 TRLLDVCGL---MEAHKKFKV----ECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGRAMAYK 364 (892)
Q Consensus 292 TR~~~v~~~---~~~~~~~~l----~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~ 364 (892)
||+..-... --....+++ =.++.+|+-++|....+. +-.+.-.+.+.+..+|-+-|+..++=.+++.
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL------PLDAADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC------CCChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 998643221 111222333 357889999999887432 2234567889999999999999998877743
Q ss_pred CChHHHHHHHHHHHhhhcccCCCchhhh-hhhhhhhcCCCchhhhHHHhhhcCCCCCccccHHHHHHHHHhCCCCCCchH
Q 002691 365 TTPEEWRYAIQVLRRAASEFAGLGKEVY-PLLKFSYDSLFNDTIRSCLLYCSLYPEDYHISKSDLIDCWIGEGFLDENDR 443 (892)
Q Consensus 365 ~~~~~w~~~l~~l~~~~~~~~~~~~~i~-~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~ 443 (892)
.+.+.--..+. +..+-+. -...--++.||+ .++..++-||+++.= -..|+..-..
T Consensus 241 ~~~~q~~~~Ls----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~Ltg--------- 296 (894)
T COG2909 241 TSAEQSLRGLS----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNALTG--------- 296 (894)
T ss_pred CcHHHHhhhcc----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHHHhc---------
Confidence 34333222111 1111111 122335678999 799999999998542 1233322211
Q ss_pred HHHHhhcchhHHHHHHHHhhcceee---cCCceeehHHHHHHHHHHHh
Q 002691 444 FEAQKQNQGYFTIGILVHACLLEEV---EDDKVKMHDVIRDMTLWIAC 488 (892)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~~~~i~~ 488 (892)
++.+...+++|.+++|+-.. ....|+.|.+..+|-+.-..
T Consensus 297 -----~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 297 -----EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred -----CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 56677789999999987643 67789999999999775543
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.02 E-value=4.1e-09 Score=113.20 Aligned_cols=268 Identities=15% Similarity=0.108 Sum_probs=147.3
Q ss_pred ccchHHHHHHHHHhhc--------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHh
Q 002691 158 VVGLQSILEQVWSCLT--------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKK 229 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~--------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (892)
|||++..++++..++. ...+.++|++|+|||+||+.+++.. . ..+ ..+..+.......+ ...+..
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~-~--~~~---~~~~~~~~~~~~~l-~~~l~~ 78 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM-G--VNL---KITSGPALEKPGDL-AAILTN 78 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CCE---EEeccchhcCchhH-HHHHHh
Confidence 8999999999888876 3468899999999999999999987 2 222 12222111112222 222233
Q ss_pred cCCCC----CcccCCChHHHHHHHHHHhccCcEEEEEecccccccccccccccCCCCCCCcEEEEEecchhhccccc--c
Q 002691 230 IGLFD----GLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERVDLTKVGVPVPNSRNVASKVVFTTRLLDVCGLME--A 303 (892)
Q Consensus 230 l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IiiTTR~~~v~~~~~--~ 303 (892)
++... +..+..+ ......+...+.+.+..+|+|+..+...+... + .+.+-|..||+...+...+. .
T Consensus 79 ~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~---~----~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 79 LEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRLD---L----PPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred cccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceeec---C----CCeEEEEecCCccccCHHHHhhc
Confidence 32211 0001111 12334566666777777888877655444321 1 22455666777654433211 1
Q ss_pred cceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhhcc
Q 002691 304 HKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGRAMAYKTTPEEWRYAIQVLRRAASE 383 (892)
Q Consensus 304 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~l~~l~~~~~~ 383 (892)
...+.+++++.++..+++.+.+...... -..+....|++.|+|.|-.+..++..+. ..+. ..+...-.
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~---~~~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~-~~~~~~it 218 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVE---IEPEAALEIARRSRGTPRIANRLLRRVR--------DFAQ-VRGQKIIN 218 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHHhCCCcchHHHHHHHHH--------HHHH-HcCCCCcC
Confidence 3467899999999999999887643322 2246678899999999976655554321 1100 00000000
Q ss_pred cCCCchhhhhhhhhhhcCCCchhhhHHHh-hhcCCCCCccccHHHHHHHHHhCCCCCCchHHHHHhhcchhHHHH-HHHH
Q 002691 384 FAGLGKEVYPLLKFSYDSLFNDTIRSCLL-YCSLYPEDYHISKSDLIDCWIGEGFLDENDRFEAQKQNQGYFTIG-ILVH 461 (892)
Q Consensus 384 ~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~l~-~L~~ 461 (892)
. ..-......+...|..+++ +.+..+. ....+..+ .+..+.+.... |. + .......++ .|++
T Consensus 219 ~-~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--~--------~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 219 R-DIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--D--------ADTIEDVYEPYLLQ 282 (305)
T ss_pred H-HHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--C--------cchHHHhhhHHHHH
Confidence 0 0001222224566778877 5555444 44556443 34443333221 11 1 233444566 5999
Q ss_pred hhcceee
Q 002691 462 ACLLEEV 468 (892)
Q Consensus 462 ~~ll~~~ 468 (892)
++|++..
T Consensus 283 ~~li~~~ 289 (305)
T TIGR00635 283 IGFLQRT 289 (305)
T ss_pred cCCcccC
Confidence 9999754
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.99 E-value=6e-09 Score=112.57 Aligned_cols=267 Identities=13% Similarity=0.076 Sum_probs=146.4
Q ss_pred ccchHHHHHHHHHhhc--------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHh
Q 002691 158 VVGLQSILEQVWSCLT--------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKK 229 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~--------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (892)
|+|++..++.+...+. ...+.|+|++|+||||+|+.+++.. . ..+ .++..+. ......+..++..
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~~-~~~~~~l~~~l~~ 99 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGPA-LEKPGDLAAILTN 99 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEeccc-ccChHHHHHHHHh
Confidence 8999999998887765 4578899999999999999999987 2 222 1222211 1111223333333
Q ss_pred cCCCCC----cccCCChHHHHHHHHHHhccCcEEEEEecccccccccccccccCCCCCCCcEEEEEecchhhccccc--c
Q 002691 230 IGLFDG----LWKNRSREEKALDIFKVLSKKKFVLLLDDLWERVDLTKVGVPVPNSRNVASKVVFTTRLLDVCGLME--A 303 (892)
Q Consensus 230 l~~~~~----~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IiiTTR~~~v~~~~~--~ 303 (892)
+....- ..+..+ ....+.+...+.+.+..+|+|+..+...... .+ .+.+-|..|||...+..... .
T Consensus 100 l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l----~~~~li~at~~~~~l~~~L~sRf 171 (328)
T PRK00080 100 LEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DL----PPFTLIGATTRAGLLTSPLRDRF 171 (328)
T ss_pred cccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cC----CCceEEeecCCcccCCHHHHHhc
Confidence 322110 000011 1122334555566666777776544332211 11 12345666777554432211 1
Q ss_pred cceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhhcc
Q 002691 304 HKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGRAMAYKTTPEEWRYAIQVLRRAASE 383 (892)
Q Consensus 304 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~l~~l~~~~~~ 383 (892)
...+.+++++.++..+++.+.+....... ..+....|++.|+|.|-.+..+...+. .|.... ... .
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~--~ 237 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGVEI---DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDG--V 237 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCC--C
Confidence 24689999999999999998877544222 246788999999999965555444321 111100 000 0
Q ss_pred cC-CCchhhhhhhhhhhcCCCchhhhHHHh-hhcCCCCCccccHHHHHHHHHhCCCCCCchHHHHHhhcchhHHHH-HHH
Q 002691 384 FA-GLGKEVYPLLKFSYDSLFNDTIRSCLL-YCSLYPEDYHISKSDLIDCWIGEGFLDENDRFEAQKQNQGYFTIG-ILV 460 (892)
Q Consensus 384 ~~-~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~l~-~L~ 460 (892)
+. ..-......+...+..|++ ..+..+. ....|+.+ .+..+.+.... -.+ ....+..++ .|+
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----g~~--------~~~~~~~~e~~Li 302 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL-----GEE--------RDTIEDVYEPYLI 302 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH-----CCC--------cchHHHHhhHHHH
Confidence 00 0001233445667778877 4555553 66667665 45555443222 111 233343455 788
Q ss_pred Hhhcceee
Q 002691 461 HACLLEEV 468 (892)
Q Consensus 461 ~~~ll~~~ 468 (892)
+.+|++..
T Consensus 303 ~~~li~~~ 310 (328)
T PRK00080 303 QQGFIQRT 310 (328)
T ss_pred HcCCcccC
Confidence 88888754
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.98 E-value=3.5e-10 Score=122.85 Aligned_cols=85 Identities=34% Similarity=0.324 Sum_probs=42.7
Q ss_pred CCCCcccEEEecCCccccc----cchhhcCCCCCcEEEecCccccc-------cChhhcCcCcCCEEeccCCCcc-ccch
Q 002691 535 PRCPHLVTLFLNNNKLEVI----SSRFFHYMPSLKVLKLSHIQLTE-------LPSRISKLVSLQHLDLSHTRIK-ELPG 602 (892)
Q Consensus 535 ~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~l~~-------lp~~i~~L~~L~~L~l~~~~i~-~lp~ 602 (892)
..+.+|+.|.++++.++.. ....+...+.|+.|+++++.+.. ++..+.++++|++|++++|.+. ..+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 3344466666666554221 11223445556666666554442 2334555666666666666554 3333
Q ss_pred hhhcCCC---CCEEecCCCc
Q 002691 603 ELEILVN---LKCLNLNHTM 619 (892)
Q Consensus 603 ~i~~l~~---L~~L~l~~~~ 619 (892)
.+..+.+ |++|++++|.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHhccCcccEEEeeCCc
Confidence 3433333 6666666664
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=3.8e-10 Score=122.54 Aligned_cols=228 Identities=18% Similarity=0.110 Sum_probs=130.4
Q ss_pred EEecCCccc-cccchhhcCCCCCcEEEecCcccc-----ccChhhcCcCcCCEEeccCCCccc-------cchhhhcCCC
Q 002691 543 LFLNNNKLE-VISSRFFHYMPSLKVLKLSHIQLT-----ELPSRISKLVSLQHLDLSHTRIKE-------LPGELEILVN 609 (892)
Q Consensus 543 L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~i~~-------lp~~i~~l~~ 609 (892)
|+|.++.++ ......+..+.+|++|+++++.++ .++..+...++|++|+++++.+.. ++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445555443 222344677788999999999874 367777788889999999886652 3456777889
Q ss_pred CCEEecCCCcCccccchhhhcCCCc---ccEEEeeccccccCCCCCCCCcccchhhhHHHHhcCC-CCCcEEEEEecchh
Q 002691 610 LKCLNLNHTMYLSVIPRQLISKFSM---LHVLRMFSSLYFKNSEVSGDGVLFARDELLVEELLGL-KNLEVLEFTLTSSH 685 (892)
Q Consensus 610 L~~L~l~~~~~l~~~p~~~i~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~L~~L~l~~~~~~ 685 (892)
|+.|++++|......+.. +..+.+ |++|++..+. +... ........+..+ ++|+.|+++.+...
T Consensus 83 L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~------~~~~-----~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 83 LQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNG------LGDR-----GLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred eeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCc------cchH-----HHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 999999998754334433 555554 9999887532 1110 012234456666 88888888877654
Q ss_pred h--HHHhhccchhhccceeeEecCCCCCccc-c--cccccccCCCCEEeEecCCCccceeeccc--cccCCCCcCEEEEe
Q 002691 686 V--LQMFLTSNELRRCSQALFLDGLKNSKWI-D--ASQLAELKHLNRLRIRDCEELEELKVDLR--QSCVFNSLQKVQIS 758 (892)
Q Consensus 686 ~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~--~~~l~~l~~L~~L~l~~~~~l~~l~~~~~--~~~~l~~L~~L~L~ 758 (892)
. ...+.........|+.|++.++.-.... . ...+..+++|+.|++++|. +........ ....+++|+.|+++
T Consensus 151 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 151 GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecC
Confidence 1 2222222222346777777765422110 0 0123334577777777763 221110000 00235677777777
Q ss_pred cCCCCCCC--cccc-----cCCCccEEEEecCc
Q 002691 759 LCSKLKDL--TFLV-----FAPNVKSIEIRSCL 784 (892)
Q Consensus 759 ~c~~l~~l--~~l~-----~l~~L~~L~L~~c~ 784 (892)
+|. +.+. ..+. ..+.|++|++++|.
T Consensus 230 ~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 230 DNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred CCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 763 3321 1111 13677777777764
No 34
>PF05729 NACHT: NACHT domain
Probab=98.96 E-value=4.5e-09 Score=101.90 Aligned_cols=142 Identities=20% Similarity=0.251 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCC----CcEEEEEEeCCccCHH---HHHHHHHHhcCCCCCcccCCChHHHHH
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYG----FDFVIWVVVSKDLQLE---KIQETIGKKIGLFDGLWKNRSREEKAL 247 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 247 (892)
+++.|+|.+|+||||+++.++..... ... +...+|++.+...... .+...|........ .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 58999999999999999999988732 222 4567777766544332 34444444432211 11111
Q ss_pred HHHHH-hccCcEEEEEeccccccc---------ccc-cccccCCCCCCCcEEEEEecchhh---cccccccceEEccCCC
Q 002691 248 DIFKV-LSKKKFVLLLDDLWERVD---------LTK-VGVPVPNSRNVASKVVFTTRLLDV---CGLMEAHKKFKVECLS 313 (892)
Q Consensus 248 ~l~~~-l~~kr~LlVlDdv~~~~~---------~~~-~~~~l~~~~~~gs~IiiTTR~~~v---~~~~~~~~~~~l~~L~ 313 (892)
.+... -+.++++||+|++++... +.. +...+.....++.+|+||+|.... .........+.+.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 22222 257899999999986432 111 112222212468999999998665 3333444678999999
Q ss_pred hHHHHHHHHHHh
Q 002691 314 DEDAWQLFREKV 325 (892)
Q Consensus 314 ~~ea~~Lf~~~a 325 (892)
+++..+++.+..
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999997764
No 35
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.96 E-value=3.3e-11 Score=124.20 Aligned_cols=293 Identities=17% Similarity=0.133 Sum_probs=143.2
Q ss_pred CcccEEEecCCccccc-c-chhhcCCCCCcEEEecCcc-ccc--cChhhcCcCcCCEEeccCC-Ccccc--chhhhcCCC
Q 002691 538 PHLVTLFLNNNKLEVI-S-SRFFHYMPSLKVLKLSHIQ-LTE--LPSRISKLVSLQHLDLSHT-RIKEL--PGELEILVN 609 (892)
Q Consensus 538 ~~L~~L~l~~~~~~~~-~-~~~~~~l~~L~~L~L~~~~-l~~--lp~~i~~L~~L~~L~l~~~-~i~~l--p~~i~~l~~ 609 (892)
..|+.|.+.++.-... + -.+...++++..|++.+|. ++. +-..-..+.+|++|++..| .|+.. -.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3567777777732111 1 1234567777777777773 332 1112235677778887775 55532 223445677
Q ss_pred CCEEecCCCcCccccc-hhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHHhcCCCCCcEEEEEecchhhHH
Q 002691 610 LKCLNLNHTMYLSVIP-RQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEELLGLKNLEVLEFTLTSSHVLQ 688 (892)
Q Consensus 610 L~~L~l~~~~~l~~~p-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 688 (892)
|++|+++.|..+..-. .....+..+|+.+...+|.... .......=..+.-+-++++..+......
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~-------------le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE-------------LEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc-------------HHHHHHHhccChHhhccchhhhccccch
Confidence 7778777776543300 0012334444444333222110 0000000111111222222111111111
Q ss_pred HhhccchhhccceeeEecCCCCCccccccccc-ccCCCCEEeEecCCCccceeeccccccCCCCcCEEEEecCCCCCCCc
Q 002691 689 MFLTSNELRRCSQALFLDGLKNSKWIDASQLA-ELKHLNRLRIRDCEELEELKVDLRQSCVFNSLQKVQISLCSKLKDLT 767 (892)
Q Consensus 689 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~ 767 (892)
.+.........|+.|...+|...+......++ +.++|+.|.+.+|..+.+......+ .+.+.|+.+++.+|....+-.
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-rn~~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-RNCPHLERLDLEECGLITDGT 363 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-cCChhhhhhcccccceehhhh
Confidence 12222223445666666666655444333333 3567777777777665543222222 356677777777775433321
Q ss_pred --cc-ccCCCccEEEEecCcchhhhhccCcccCCcccccCCCCccCcccEeecCcccccccccC-CCCCCCCccEEeecc
Q 002691 768 --FL-VFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNPFAKLQHLELVCLRNLNSIYW-KPLPFSQLKEMLVDD 843 (892)
Q Consensus 768 --~l-~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~ 843 (892)
.+ .++|.|+.|.|+.|..+++..... +.....+...|..+.+++||.+.+-.. ....+++|+.+++.+
T Consensus 364 L~sls~~C~~lr~lslshce~itD~gi~~--------l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEGIRH--------LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhhhhh--------hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 11 256777777777776666552100 011233456677777777776654321 122456777777777
Q ss_pred ccccCCCCC
Q 002691 844 CYFLKKLPL 852 (892)
Q Consensus 844 C~~L~~lP~ 852 (892)
|....+=|.
T Consensus 436 ~q~vtk~~i 444 (483)
T KOG4341|consen 436 CQDVTKEAI 444 (483)
T ss_pred hhhhhhhhh
Confidence 766665444
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=1.1e-09 Score=104.25 Aligned_cols=130 Identities=28% Similarity=0.364 Sum_probs=48.1
Q ss_pred ccccCccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhh-cCcCcC
Q 002691 509 STISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRI-SKLVSL 587 (892)
Q Consensus 509 ~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i-~~L~~L 587 (892)
+...+..+++.|++.++.+..+...-..+.+|+.|++++|.++.+.. +..+++|++|++++|.++.++..+ ..+++|
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 34445556788888888888775442257788888888888877754 677888888888888888886555 357888
Q ss_pred CEEeccCCCccccc--hhhhcCCCCCEEecCCCcCccccch---hhhcCCCcccEEEee
Q 002691 588 QHLDLSHTRIKELP--GELEILVNLKCLNLNHTMYLSVIPR---QLISKFSMLHVLRMF 641 (892)
Q Consensus 588 ~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~~p~---~~i~~l~~L~~L~l~ 641 (892)
+.|++++|+|..+- ..+..+++|++|++.+|+. ...+. .++..+++|+.|+..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCE
Confidence 88888888777543 3466788888888888864 22222 346677777777654
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.80 E-value=1.7e-08 Score=102.71 Aligned_cols=152 Identities=15% Similarity=0.195 Sum_probs=92.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
.+.+.++|++|+|||+||+++++.... ....+.|++++.. ..... .+.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~y~~~~~~---~~~~~-----------------------~~~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLL---NQRTAIYIPLSKS---QYFSP-----------------------AVLENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEeeHHHh---hhhhH-----------------------HHHhhc
Confidence 457899999999999999999998621 2234567765421 00000 111122
Q ss_pred ccCcEEEEEeccccc---ccccc-cccccCCCCCCCcEEEEEecc----------hhhcccccccceEEccCCChHHHHH
Q 002691 254 SKKKFVLLLDDLWER---VDLTK-VGVPVPNSRNVASKVVFTTRL----------LDVCGLMEAHKKFKVECLSDEDAWQ 319 (892)
Q Consensus 254 ~~kr~LlVlDdv~~~---~~~~~-~~~~l~~~~~~gs~IiiTTR~----------~~v~~~~~~~~~~~l~~L~~~ea~~ 319 (892)
+ +.-+||+||+|.. ..|+. +...+......|..+||+|.+ +.+...+.....+++++++.++.++
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 2 2348999999863 33442 222222111345566554443 3444455556688999999999999
Q ss_pred HHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002691 320 LFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIG 358 (892)
Q Consensus 320 Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 358 (892)
++++.+....... -+++..-|++++.|-.-++..+-
T Consensus 169 iL~~~a~~~~l~l---~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 169 VLQRNAYQRGIEL---SDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHH
Confidence 9999886543222 24667778888887766555443
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.75 E-value=1.3e-08 Score=97.14 Aligned_cols=120 Identities=28% Similarity=0.358 Sum_probs=57.4
Q ss_pred EEEEeCCCcccccccc-CccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCcccc
Q 002691 497 FLVYAGAGLCKASTIS-GWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLT 575 (892)
Q Consensus 497 ~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 575 (892)
-+...+..+..+.... .+.+++.|++++|.+..+.. +..+++|++|++++|.++.+.+.....+++|+.|++++|.|.
T Consensus 23 ~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 23 ELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp -------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---
T ss_pred cccccccccccccchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCC
Confidence 3444555555555554 46789999999999999875 488999999999999999887654457999999999999887
Q ss_pred ccC--hhhcCcCcCCEEeccCCCccccch----hhhcCCCCCEEecCC
Q 002691 576 ELP--SRISKLVSLQHLDLSHTRIKELPG----ELEILVNLKCLNLNH 617 (892)
Q Consensus 576 ~lp--~~i~~L~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l~~ 617 (892)
.+- ..+..+++|++|++.+|.+...+. .+..+|+|+.||-..
T Consensus 102 ~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 102 DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 653 457789999999999999886653 478899999998643
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.73 E-value=4.2e-07 Score=94.54 Aligned_cols=216 Identities=17% Similarity=0.150 Sum_probs=121.5
Q ss_pred ccchHHHHHHHHHhhcccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc-CHHHHHHHHHHhcCCCCCc
Q 002691 158 VVGLQSILEQVWSCLTAGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL-QLEKIQETIGKKIGLFDGL 236 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~ 236 (892)
++|-+..+.++++.=.+.-..+||++|+||||||+.++... ...|.. +|... ++.++. ++
T Consensus 32 Llg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~-----~sAv~~gvkdlr-~i---------- 92 (436)
T COG2256 32 LLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEA-----LSAVTSGVKDLR-EI---------- 92 (436)
T ss_pred hhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEE-----eccccccHHHHH-HH----------
Confidence 45555555555544446677799999999999999999986 444432 22222 122221 11
Q ss_pred ccCCChHHHHHHH-HHHhccCcEEEEEeccc--ccccccccccccCCCCCCCcEEEE--Eecchhh---cccccccceEE
Q 002691 237 WKNRSREEKALDI-FKVLSKKKFVLLLDDLW--ERVDLTKVGVPVPNSRNVASKVVF--TTRLLDV---CGLMEAHKKFK 308 (892)
Q Consensus 237 ~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~--~~~~~~~~~~~l~~~~~~gs~Iii--TTR~~~v---~~~~~~~~~~~ 308 (892)
.+.- .....|++.+|.+|.|- +..+.+.+. |.- .+|.-|+| ||.|+.- ....+...++.
T Consensus 93 ---------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~v-E~G~iilIGATTENPsF~ln~ALlSR~~vf~ 159 (436)
T COG2256 93 ---------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHV-ENGTIILIGATTENPSFELNPALLSRARVFE 159 (436)
T ss_pred ---------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhh-cCCeEEEEeccCCCCCeeecHHHhhhhheee
Confidence 2222 12234899999999995 334444443 333 56787777 7777653 12234467899
Q ss_pred ccCCChHHHHHHHHHHhCCcccCC---CC-ChHHHHHHHHHHhCCchhHHHHHHHH---HhcCC---ChHHHHHHHHHHH
Q 002691 309 VECLSDEDAWQLFREKVGEETLNY---HH-DIPELAQMVAKECGGLPLALITIGRA---MAYKT---TPEEWRYAIQVLR 378 (892)
Q Consensus 309 l~~L~~~ea~~Lf~~~a~~~~~~~---~~-~~~~~~~~i~~~c~glPLai~~~g~~---l~~~~---~~~~w~~~l~~l~ 378 (892)
+++|+.+|-.+++.+.+-...... .. -.++.-.-+++.++|---++-..... +.... +.+..+..+++-.
T Consensus 160 lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~ 239 (436)
T COG2256 160 LKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRS 239 (436)
T ss_pred eecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhh
Confidence 999999999999998543222111 11 12456677888998876544333222 22111 2333333333211
Q ss_pred hhhcccCCCchhhhhhhhhhhcCCCch
Q 002691 379 RAASEFAGLGKEVYPLLKFSYDSLFND 405 (892)
Q Consensus 379 ~~~~~~~~~~~~i~~~l~~sy~~L~~~ 405 (892)
....+..+..-++.+++.-|...-.++
T Consensus 240 ~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 240 ARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred hccCCCcchHHHHHHHHHHhhccCCcC
Confidence 111111111125667777788777653
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.73 E-value=4.1e-10 Score=120.34 Aligned_cols=121 Identities=25% Similarity=0.354 Sum_probs=71.5
Q ss_pred eEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCEEeccCCC
Q 002691 517 IRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTR 596 (892)
Q Consensus 517 l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 596 (892)
....+++.|.+..+|..+..|..|..+.+..|.+..++.. ++++..|.+|+|+.|.++.+|..++.|+ |+.|-+++|+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 3445555566666665555555666666666655555544 5556666666666666666666665554 6666666666
Q ss_pred ccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEee
Q 002691 597 IKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMF 641 (892)
Q Consensus 597 i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~ 641 (892)
++.+|..++.+..|.+||.+.|. +..+|.. ++.+.+|+.|.+.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vr 197 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVR 197 (722)
T ss_pred cccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHh
Confidence 66666666655666666666553 4555555 5566666655554
No 41
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.60 E-value=1.6e-06 Score=99.06 Aligned_cols=202 Identities=14% Similarity=0.114 Sum_probs=118.8
Q ss_pred ccchHHHHHHHHHhhc--------ccEEEEEcCCCCcHHHHHHHHHhhccCC--CCCCc--EEEEEEeCCccCHHHHHHH
Q 002691 158 VVGLQSILEQVWSCLT--------AGIIGLYGMGGVGKTTLLTLLNNKFLNR--PYGFD--FVIWVVVSKDLQLEKIQET 225 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~--------~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~--~~~wv~vs~~~~~~~~~~~ 225 (892)
++|||+++++|...|. ..++.|+|++|+|||+.++.|.+..... ..... .+++|.+..-.+...++..
T Consensus 757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqv 836 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQV 836 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHH
Confidence 7899999999999888 3467899999999999999998765211 11222 3567777666778889999
Q ss_pred HHHhcCCCCCcccCCChHHHHHHHHHHhc---cCcEEEEEecccccc--cccccccccCCCCCCCcEEEE--Eecchh--
Q 002691 226 IGKKIGLFDGLWKNRSREEKALDIFKVLS---KKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVVF--TTRLLD-- 296 (892)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~Iii--TTR~~~-- 296 (892)
|.+++..... .......+....+...+. +...+||||+++.-. .-+.+...+......+++|+| +|...+
T Consensus 837 I~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLp 915 (1164)
T PTZ00112 837 LYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLP 915 (1164)
T ss_pred HHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcc
Confidence 9988854321 122333445555555552 234599999997422 111111111101023455544 333211
Q ss_pred ------hcccccccceEEccCCChHHHHHHHHHHhCCcc-cCCCCChHHHHHHHHHHhCCchhHHHHHHHHH
Q 002691 297 ------VCGLMEAHKKFKVECLSDEDAWQLFREKVGEET-LNYHHDIPELAQMVAKECGGLPLALITIGRAM 361 (892)
Q Consensus 297 ------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l 361 (892)
+...++ ...+..+|.+.++-.+++..++.... .-.+..++-+|+.++...|-.-.||.++-.+.
T Consensus 916 erLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 916 ERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 222222 22467799999999999999876422 11122233444444444455566666654443
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.55 E-value=1.9e-06 Score=96.09 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=101.2
Q ss_pred ccchHHHHHH---HHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc-CHHHHHHHHHHhc
Q 002691 158 VVGLQSILEQ---VWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL-QLEKIQETIGKKI 230 (892)
Q Consensus 158 ~vGr~~~~~~---l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l 230 (892)
+||.+..+.. +..++. ...+.++|++|+||||+|+.+++.. ...| +.++... ....+ +.+++
T Consensus 14 ~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~i-r~ii~-- 82 (413)
T PRK13342 14 VVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDL-REVIE-- 82 (413)
T ss_pred hcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHH-HHHHH--
Confidence 7888877655 655555 5678899999999999999999886 2233 2222211 11111 11111
Q ss_pred CCCCCcccCCChHHHHHHHHHH-hccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEE--Eecchhh--c-cccc
Q 002691 231 GLFDGLWKNRSREEKALDIFKV-LSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVF--TTRLLDV--C-GLME 302 (892)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iii--TTR~~~v--~-~~~~ 302 (892)
..... ..+++.+|++|+++.- .+.+.+...+ ..|..++| ||.+... . ....
T Consensus 83 -----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l----e~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 83 -----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV----EDGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred -----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh----hcCcEEEEEeCCCChhhhccHHHhc
Confidence 11111 2457889999999753 2333333332 23455554 3444321 1 1122
Q ss_pred ccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHHH
Q 002691 303 AHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGRA 360 (892)
Q Consensus 303 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 360 (892)
....+.+.+++.++.+.++.+.+.........-..+....|++.|+|.|..+..+...
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2357899999999999999886543210110223566788999999999776555433
No 43
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.55 E-value=4.4e-07 Score=92.88 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=97.9
Q ss_pred hHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcc
Q 002691 161 LQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLW 237 (892)
Q Consensus 161 r~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 237 (892)
.+..++.+.+++. ...+.|+|.+|+|||+||+.+++... ......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----------
Confidence 4556677776654 67899999999999999999998862 2233456665543211 00
Q ss_pred cCCChHHHHHHHHHHhccCcEEEEEecccccc---cc-cccccccCCCCCCCcEEEEEecchhh---------ccccccc
Q 002691 238 KNRSREEKALDIFKVLSKKKFVLLLDDLWERV---DL-TKVGVPVPNSRNVASKVVFTTRLLDV---------CGLMEAH 304 (892)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~-~~~~~~l~~~~~~gs~IiiTTR~~~v---------~~~~~~~ 304 (892)
..+.+.+.+ .-+||+||++... .| ..+...+......+.+||+||+.... ...+...
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 011112222 2389999997532 22 22322221110234578888875321 1122223
Q ss_pred ceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002691 305 KKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIG 358 (892)
Q Consensus 305 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 358 (892)
..+++++++.++...++...+...... --.+....+++.+.|.|..+..+.
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~---~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQ---LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHH
Confidence 578999999999999988754322211 224556777888888887776654
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.9e-08 Score=103.36 Aligned_cols=107 Identities=23% Similarity=0.269 Sum_probs=70.0
Q ss_pred CCCCcccEEEecCCccccccc-hhhcCCCCCcEEEecCccccc---cChhhcCcCcCCEEeccCCCccccchh--hhcCC
Q 002691 535 PRCPHLVTLFLNNNKLEVISS-RFFHYMPSLKVLKLSHIQLTE---LPSRISKLVSLQHLDLSHTRIKELPGE--LEILV 608 (892)
Q Consensus 535 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~~---lp~~i~~L~~L~~L~l~~~~i~~lp~~--i~~l~ 608 (892)
.++++|+...|.++.+...+. .....|++++.|||++|-+.. +-.-...|++|+.|+|+.|.+.....+ -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 677888888888887655542 346778888899998885553 344556788888888888876644332 23567
Q ss_pred CCCEEecCCCcCccccchhhhcCCCcccEEEee
Q 002691 609 NLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMF 641 (892)
Q Consensus 609 ~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~ 641 (892)
.|+.|.++.|.....--..+...+++|..|.+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~ 230 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLE 230 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhh
Confidence 788888888864322111223455566666555
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.54 E-value=6.5e-09 Score=107.54 Aligned_cols=296 Identities=18% Similarity=0.198 Sum_probs=171.6
Q ss_pred ceEEEEccccccc---ccccccCCCCcccEEEecCCc-ccccc-chhhcCCCCCcEEEecCc-cccc--cChhhcCcCcC
Q 002691 516 KIRRLSLMENHIE---DLSNIYPRCPHLVTLFLNNNK-LEVIS-SRFFHYMPSLKVLKLSHI-QLTE--LPSRISKLVSL 587 (892)
Q Consensus 516 ~l~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~l~~L~~L~L~~~-~l~~--lp~~i~~L~~L 587 (892)
.++.|++.++.-. .+-.....|+++..|.+.+|. +++.. .+.-..+++|++|+|..| .++. +-.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4566777765432 233334678888888888873 22211 222356788899998886 4543 22234567888
Q ss_pred CEEeccCC-Cccc--cchhhhcCCCCCEEecCCCcCccccchhhhc----CCCcccEEEeeccccccCCCCCCCCcccch
Q 002691 588 QHLDLSHT-RIKE--LPGELEILVNLKCLNLNHTMYLSVIPRQLIS----KFSMLHVLRMFSSLYFKNSEVSGDGVLFAR 660 (892)
Q Consensus 588 ~~L~l~~~-~i~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 660 (892)
.||+++.| .|+. +-.-...+.+|+.+.+.||.. .+...+. ...-+-.+++..|....
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lT------------- 282 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLT------------- 282 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhcccc-------------
Confidence 99999888 5553 333445566677777777742 2222222 22223333333332221
Q ss_pred hhhHHHHhcCCCCCcEEEEEecchhhHHHhhccchhhccceeeEecCCCCCccccccccc-ccCCCCEEeEecCCCccce
Q 002691 661 DELLVEELLGLKNLEVLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLA-ELKHLNRLRIRDCEELEEL 739 (892)
Q Consensus 661 ~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l 739 (892)
+.....--..+..|+.|+.+......-..+.....-..+|+.|.+.+|..........++ ++++|+.+++..|....+-
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 122223334567778877765443222222222233468888888888765554433333 4778888888887544321
Q ss_pred eeccccccCCCCcCEEEEecCCCCCCC-----c-ccccCCCccEEEEecCcchhhhhccCcccCCcccccCCCCccCccc
Q 002691 740 KVDLRQSCVFNSLQKVQISLCSKLKDL-----T-FLVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNPFAKLQ 813 (892)
Q Consensus 740 ~~~~~~~~~l~~L~~L~L~~c~~l~~l-----~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 813 (892)
..... ...++.|++|.|+.|..+++- . .-.....|+.|.+++|+.+++..- ..+..+++|+
T Consensus 363 tL~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L------------e~l~~c~~Le 429 (483)
T KOG4341|consen 363 TLASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL------------EHLSICRNLE 429 (483)
T ss_pred hHhhh-ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH------------HHHhhCcccc
Confidence 11111 136888999999988766654 1 113567788889999888776533 3556778888
Q ss_pred EeecCcccccccccCC--CCCCCCccEEe
Q 002691 814 HLELVCLRNLNSIYWK--PLPFSQLKEML 840 (892)
Q Consensus 814 ~L~L~~~~~L~~i~~~--~~~~~~L~~L~ 840 (892)
.+++.+|.....-+.. ...+|+++...
T Consensus 430 ri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 430 RIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred eeeeechhhhhhhhhHHHHhhCccceehh
Confidence 8888888877654332 22355554443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=8.8e-09 Score=101.65 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=10.3
Q ss_pred hcCCCCCcEEEEEecch
Q 002691 668 LLGLKNLEVLEFTLTSS 684 (892)
Q Consensus 668 L~~l~~L~~L~l~~~~~ 684 (892)
+.+|+.|..|+++|+..
T Consensus 256 ~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHhhhhHhhcCchHhhc
Confidence 45566666666666553
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=8.5e-09 Score=110.54 Aligned_cols=127 Identities=28% Similarity=0.446 Sum_probs=95.6
Q ss_pred cccCccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCE
Q 002691 510 TISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQH 589 (892)
Q Consensus 510 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 589 (892)
.+..+..+..++++.|++..+|..+..|+ |++|.+++|+++.+|+. ++....|..||.+.|.+..+|..+++|..|+.
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcc-cccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence 34455667777888888777776655554 77888888887777776 56777788888888888888888888888888
Q ss_pred EeccCCCccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEee
Q 002691 590 LDLSHTRIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMF 641 (892)
Q Consensus 590 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~ 641 (892)
|+++.|++..+|..+. .-.|..||+++|+ +..+|-. |.+|+.||+|-+.
T Consensus 194 l~vrRn~l~~lp~El~-~LpLi~lDfScNk-is~iPv~-fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELC-SLPLIRLDFSCNK-ISYLPVD-FRKMRHLQVLQLE 242 (722)
T ss_pred HHHhhhhhhhCCHHHh-CCceeeeecccCc-eeecchh-hhhhhhheeeeec
Confidence 8888888888887777 4467778887664 6777776 7788888887776
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.1e-08 Score=104.47 Aligned_cols=159 Identities=20% Similarity=0.179 Sum_probs=105.0
Q ss_pred CccceEEEEcccccccccc--cccCCCCcccEEEecCCcccccc--chhhcCCCCCcEEEecCccccccChh--hcCcCc
Q 002691 513 GWVKIRRLSLMENHIEDLS--NIYPRCPHLVTLFLNNNKLEVIS--SRFFHYMPSLKVLKLSHIQLTELPSR--ISKLVS 586 (892)
Q Consensus 513 ~~~~l~~L~l~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~l~~lp~~--i~~L~~ 586 (892)
++++++.+++.++.+...+ .....|++++.|+|+.|-+..+. -.+...+++|+.|+|+.|.+...-.+ -..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4567888888888777665 24578899999999998554332 24467889999999999876643222 235788
Q ss_pred CCEEeccCCCcc--ccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhH
Q 002691 587 LQHLDLSHTRIK--ELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELL 664 (892)
Q Consensus 587 L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 664 (892)
|+.|.|++|+++ ++-.....+++|+.|++..|..+..-... ..-++.|++|++++.... . ...
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li------~--------~~~ 263 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI------D--------FDQ 263 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc------c--------ccc
Confidence 999999999887 34344566789999999888422211111 345677888888752221 1 112
Q ss_pred HHHhcCCCCCcEEEEEecchhh
Q 002691 665 VEELLGLKNLEVLEFTLTSSHV 686 (892)
Q Consensus 665 ~~~L~~l~~L~~L~l~~~~~~~ 686 (892)
...++.+++|+.|.++.++...
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred ccccccccchhhhhccccCcch
Confidence 2345567777777777665443
No 49
>PF13173 AAA_14: AAA domain
Probab=98.49 E-value=2.7e-07 Score=84.64 Aligned_cols=119 Identities=17% Similarity=0.136 Sum_probs=80.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLS 254 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (892)
+++.|.|+.|+||||+++.++.+. . ....+++++..+....... ..+ ..+.+.+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhhc
Confidence 589999999999999999999887 2 3355667765543221100 000 2233444444
Q ss_pred cCcEEEEEecccccccccccccccCCCCCCCcEEEEEecchhhccc------ccccceEEccCCChHHH
Q 002691 255 KKKFVLLLDDLWERVDLTKVGVPVPNSRNVASKVVFTTRLLDVCGL------MEAHKKFKVECLSDEDA 317 (892)
Q Consensus 255 ~kr~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IiiTTR~~~v~~~------~~~~~~~~l~~L~~~ea 317 (892)
.++.+|+||++....+|......+.+. ....+|++|+.+...... .+....++|.||+..|.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~-~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDN-GPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHh-ccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 478899999998888888877666665 456899999987655421 12334679999998774
No 50
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=5.5e-06 Score=94.51 Aligned_cols=188 Identities=16% Similarity=0.166 Sum_probs=105.7
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
+||.+..++.|.+++. ...+.++|..|+||||+|+.+.+.... ...+. +..+..-...+.|...-...
T Consensus 18 VIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC-e~~~~-------~~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC-ETGVT-------SQPCGVCRACREIDEGRFVD 89 (830)
T ss_pred HcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-ccCCC-------CCCCcccHHHHHHhcCCCce
Confidence 8999999999999888 456679999999999999999887621 11110 00011111111111100000
Q ss_pred C---CcccCCChHHHHHHHHHH----hccCcEEEEEecccccc--cccccccccCCCCCCCcEEEEEecchh-hcc-ccc
Q 002691 234 D---GLWKNRSREEKALDIFKV----LSKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVVFTTRLLD-VCG-LME 302 (892)
Q Consensus 234 ~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IiiTTR~~~-v~~-~~~ 302 (892)
. +.......++..+.+... ..++.-++|+|++.... .+..+...+... ....++|+||++.. +.. ..+
T Consensus 90 viEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-P~~v~FILaTtd~~KIp~TIrS 168 (830)
T PRK07003 90 YVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-PPHVKFILATTDPQKIPVTVLS 168 (830)
T ss_pred EEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-CCCeEEEEEECChhhccchhhh
Confidence 0 000011111211111111 12455689999997532 244444433332 34677777776543 322 122
Q ss_pred ccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCch-hHHHHH
Q 002691 303 AHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLP-LALITI 357 (892)
Q Consensus 303 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 357 (892)
....+.++.++.++..+.+.+.+..+... -..+..+.|++.++|.. -|+..+
T Consensus 169 RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~---id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 169 RCLQFNLKQMPAGHIVSHLERILGEERIA---FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred heEEEecCCcCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34578999999999999998877544322 22466788999998865 455443
No 51
>PRK04195 replication factor C large subunit; Provisional
Probab=98.48 E-value=8.8e-06 Score=92.68 Aligned_cols=174 Identities=21% Similarity=0.232 Sum_probs=107.4
Q ss_pred ccchHHHHHHHHHhhc-------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhc
Q 002691 158 VVGLQSILEQVWSCLT-------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKI 230 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (892)
++|.+..++++.+|+. .+.+.|+|++|+||||+|+.+++.. . ++ ++-++.+...+...+ ..++...
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-~----~~-~ielnasd~r~~~~i-~~~i~~~ 88 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-G----WE-VIELNASDQRTADVI-ERVAGEA 88 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-C----CC-EEEEcccccccHHHH-HHHHHHh
Confidence 8999999999999987 4689999999999999999999987 1 22 233444443332222 2222222
Q ss_pred CCCCCcccCCChHHHHHHHHHHhc-cCcEEEEEeccccccc------ccccccccCCCCCCCcEEEEEecchh-hcc--c
Q 002691 231 GLFDGLWKNRSREEKALDIFKVLS-KKKFVLLLDDLWERVD------LTKVGVPVPNSRNVASKVVFTTRLLD-VCG--L 300 (892)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~------~~~~~~~l~~~~~~gs~IiiTTR~~~-v~~--~ 300 (892)
.... .+. .++-+||+|+++.... +..+...+.. .+..||+|+.+.. ... .
T Consensus 89 ~~~~-----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 89 ATSG-----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK---AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred hccC-----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc---CCCCEEEeccCccccchhhH
Confidence 1110 011 3678999999975321 3333333322 2344666654322 111 1
Q ss_pred ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHHHH
Q 002691 301 MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGRAM 361 (892)
Q Consensus 301 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l 361 (892)
-.....+.+.+++.++....+.+.+.......+ .+....|++.++|-.-.+......+
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 123456899999999999988887654432222 4678889999999776655443333
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=2.8e-08 Score=98.05 Aligned_cols=128 Identities=25% Similarity=0.403 Sum_probs=103.1
Q ss_pred ccCccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCEE
Q 002691 511 ISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHL 590 (892)
Q Consensus 511 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 590 (892)
...|+.+..+++++|.+..+..+..-.+.+|.|+++.|++..+.. +..+.+|..||||+|.++++-..-.+|-|.++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 345778889999999999888777778999999999998877755 788899999999999888765555567788899
Q ss_pred eccCCCccccchhhhcCCCCCEEecCCCcCccccch-hhhcCCCcccEEEeec
Q 002691 591 DLSHTRIKELPGELEILVNLKCLNLNHTMYLSVIPR-QLISKFSMLHVLRMFS 642 (892)
Q Consensus 591 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~i~~l~~L~~L~l~~ 642 (892)
.|++|.|..+ +++++|.+|..||+++|+ +..+.. ..|++|+.|++|.+.+
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcC
Confidence 9999988888 478899999999999885 444322 1278888888887763
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.45 E-value=2.2e-07 Score=72.61 Aligned_cols=58 Identities=41% Similarity=0.573 Sum_probs=34.7
Q ss_pred cccEEEecCCccccccchhhcCCCCCcEEEecCccccccC-hhhcCcCcCCEEeccCCC
Q 002691 539 HLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELP-SRISKLVSLQHLDLSHTR 596 (892)
Q Consensus 539 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 596 (892)
+|++|++++|.+..+++..|.++++|++|++++|.++.+| ..+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4566666666666666555666666666666666666553 345566666666666554
No 54
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=4.6e-06 Score=89.56 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=111.6
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhcc---CCCCCCcEEEEEE-eCCccCHHHHHHHHHHh
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFL---NRPYGFDFVIWVV-VSKDLQLEKIQETIGKK 229 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~~ 229 (892)
++|-+..++.+...+. .....++|+.|+||||+|+.++.... ....|+|...|.. -+....++++. ++.+.
T Consensus 6 i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~~~ 84 (313)
T PRK05564 6 IIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NIIEE 84 (313)
T ss_pred ccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHHHH
Confidence 7899988999988887 56778999999999999999988641 1245667666654 23333344432 22232
Q ss_pred cCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccc--ccccccccccccCCCCCCCcEEEEEecchhhc-c-cccccc
Q 002691 230 IGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLW--ERVDLTKVGVPVPNSRNVASKVVFTTRLLDVC-G-LMEAHK 305 (892)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~~~~~l~~~~~~gs~IiiTTR~~~v~-~-~~~~~~ 305 (892)
+...+ ..+++-++|+|+++ +...+..+...+... ..++.+|++|.+.+.. . ......
T Consensus 85 ~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEep-p~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 85 VNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP-PKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCC-CCCeEEEEEeCChHhCcHHHHhhce
Confidence 22111 12455566777764 344566666555554 5678888888765422 1 122346
Q ss_pred eEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 306 KFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 306 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
.+.+.++++++....+.+.... ...+.+..++..++|.|..+...
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYND-------IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 7899999999998877665421 11344678899999998765443
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.43 E-value=3.2e-06 Score=82.33 Aligned_cols=169 Identities=16% Similarity=0.213 Sum_probs=88.3
Q ss_pred ccchHHHHHHHHHhhc--------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHh
Q 002691 158 VVGLQSILEQVWSCLT--------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKK 229 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~--------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (892)
|||.+..++++.-++. ...+.+||++|+||||||..+++.. ...|. +++.+.-....++ ..++..
T Consensus 26 fiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il~~ 98 (233)
T PF05496_consen 26 FIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAILTN 98 (233)
T ss_dssp S-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHHHT
T ss_pred ccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHHHh
Confidence 9999998887655544 4578999999999999999999997 34442 2222110001111 111111
Q ss_pred cCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccc--ccc-------ccccccccCCCCCCC-----------cEEE
Q 002691 230 IGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWE--RVD-------LTKVGVPVPNSRNVA-----------SKVV 289 (892)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~-------~~~~~~~l~~~~~~g-----------s~Ii 289 (892)
+ +++-+|.+|++-. ..+ .++....+.-+.+.+ +-|=
T Consensus 99 -----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 99 -----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp --------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred -----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 2 1344666677642 111 111110000000111 2344
Q ss_pred EEecchhhccccccc--ceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHHH
Q 002691 290 FTTRLLDVCGLMEAH--KKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGRA 360 (892)
Q Consensus 290 iTTR~~~v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 360 (892)
.|||...+..-+... -..+++..+.+|-.++..+.+..-... -.++.+.+|+++|.|-|--+.-+-..
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 588876554333322 234899999999999998877543322 23578999999999999655544333
No 56
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=4.7e-07 Score=92.16 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=61.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc--cCHHHHHHHHHHhcCCCCCcccCCChH-------H
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD--LQLEKIQETIGKKIGLFDGLWKNRSRE-------E 244 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~-------~ 244 (892)
-..++|+|++|+|||||++.+++.. .. .+|+.++|+.++.. +++.++++.+...+-...- .. ... .
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~-~~~~~~~~~~~ 90 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DE-PPERHVQVAEM 90 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CC-CHHHHHHHHHH
Confidence 4689999999999999999999997 33 38999999998777 7899999999333221110 11 111 1
Q ss_pred HHHHHHHH-hccCcEEEEEecccc
Q 002691 245 KALDIFKV-LSKKKFVLLLDDLWE 267 (892)
Q Consensus 245 ~~~~l~~~-l~~kr~LlVlDdv~~ 267 (892)
........ -.++++++++|++..
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHH
Confidence 11111111 247999999999953
No 57
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.40 E-value=2.6e-06 Score=86.77 Aligned_cols=142 Identities=20% Similarity=0.249 Sum_probs=89.7
Q ss_pred ccchHHHHHHHHHhhcccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcc
Q 002691 158 VVGLQSILEQVWSCLTAGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLW 237 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 237 (892)
+||-+..+..+++.=...-+.+||++|+||||||+.+.+.- +... ..||..|..-.-..-.+.|.++-.
T Consensus 146 lv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k~~S----yrfvelSAt~a~t~dvR~ife~aq------ 214 (554)
T KOG2028|consen 146 LVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-KKHS----YRFVELSATNAKTNDVRDIFEQAQ------ 214 (554)
T ss_pred hcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-CCCc----eEEEEEeccccchHHHHHHHHHHH------
Confidence 44444444444433337788899999999999999999886 2222 456776654322222233322210
Q ss_pred cCCChHHHHHHHHHHhccCcEEEEEeccc--ccccccccccccCCCCCCCcEEEE--Eecchhh---cccccccceEEcc
Q 002691 238 KNRSREEKALDIFKVLSKKKFVLLLDDLW--ERVDLTKVGVPVPNSRNVASKVVF--TTRLLDV---CGLMEAHKKFKVE 310 (892)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~~~~~l~~~~~~gs~Iii--TTR~~~v---~~~~~~~~~~~l~ 310 (892)
=...+.++|.+|.+|.|- +..+.+.+ +|.. .+|.-++| ||.++.. +.......++.|+
T Consensus 215 -----------~~~~l~krkTilFiDEiHRFNksQQD~f---LP~V-E~G~I~lIGATTENPSFqln~aLlSRC~VfvLe 279 (554)
T KOG2028|consen 215 -----------NEKSLTKRKTILFIDEIHRFNKSQQDTF---LPHV-ENGDITLIGATTENPSFQLNAALLSRCRVFVLE 279 (554)
T ss_pred -----------HHHhhhcceeEEEeHHhhhhhhhhhhcc---ccee-ccCceEEEecccCCCccchhHHHHhccceeEec
Confidence 012345789999999994 33444444 3444 67887777 7877654 2233445688999
Q ss_pred CCChHHHHHHHHHHh
Q 002691 311 CLSDEDAWQLFREKV 325 (892)
Q Consensus 311 ~L~~~ea~~Lf~~~a 325 (892)
.|..++-..++.+..
T Consensus 280 kL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 280 KLPVNAVVTILMRAI 294 (554)
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999999988743
No 58
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=6.6e-06 Score=99.00 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=149.5
Q ss_pred ccchHHHHHHHHHhhc------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCH---HHHHHHHHH
Q 002691 158 VVGLQSILEQVWSCLT------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQL---EKIQETIGK 228 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~---~~~~~~i~~ 228 (892)
++||+.+++.+...+. ..++.+.|..|||||++++.|.....+.+..|-...+-....+... .+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 7899999999999888 5699999999999999999999987443233321111112222211 122222222
Q ss_pred hc-------------------CCCCCc--------------------ccCCChHHHH-----HHHHHHh-ccCcEEEEEe
Q 002691 229 KI-------------------GLFDGL--------------------WKNRSREEKA-----LDIFKVL-SKKKFVLLLD 263 (892)
Q Consensus 229 ~l-------------------~~~~~~--------------------~~~~~~~~~~-----~~l~~~l-~~kr~LlVlD 263 (892)
++ +..... ......+.+. ..+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 211100 0001111111 1122222 3469999999
Q ss_pred cc-cccccccccccccCCCCC----CCcEEEE--Eecch--hhcccccccceEEccCCChHHHHHHHHHHhCCcccCCCC
Q 002691 264 DL-WERVDLTKVGVPVPNSRN----VASKVVF--TTRLL--DVCGLMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHH 334 (892)
Q Consensus 264 dv-~~~~~~~~~~~~l~~~~~----~gs~Iii--TTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 334 (892)
|+ |-+..-.++...+..... .-..|.. |.+.. .+-........+.|.||+..+...+.....+... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 99 422211111111110000 0112222 22221 1222223346789999999999999998876533 3
Q ss_pred ChHHHHHHHHHHhCCchhHHHHHHHHHhcC------CChHHHHHHHHHHHhhhcccCCCchhhhhhhhhhhcCCCchhhh
Q 002691 335 DIPELAQMVAKECGGLPLALITIGRAMAYK------TTPEEWRYAIQVLRRAASEFAGLGKEVYPLLKFSYDSLFNDTIR 408 (892)
Q Consensus 335 ~~~~~~~~i~~~c~glPLai~~~g~~l~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k 408 (892)
...+....|+++..|.|+-+..+-..+... .+...|+.-...+. ..... +.+...+..-.+.||. ..+
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~----~~~~~-~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG----ILATT-DAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC----Cchhh-HHHHHHHHHHHhcCCH-HHH
Confidence 345778999999999999999988877663 34445543222111 11122 2366678889999998 788
Q ss_pred HHHhhhcCCCCCccccHHHHHHHH
Q 002691 409 SCLLYCSLYPEDYHISKSDLIDCW 432 (892)
Q Consensus 409 ~cfl~~s~fp~~~~i~~~~Li~~w 432 (892)
..+-..|++-..++ .+.|...+
T Consensus 312 ~Vl~~AA~iG~~F~--l~~La~l~ 333 (849)
T COG3899 312 EVLKAAACIGNRFD--LDTLAALA 333 (849)
T ss_pred HHHHHHHHhCccCC--HHHHHHHH
Confidence 88888888765443 44444433
No 59
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.37 E-value=4.6e-05 Score=88.70 Aligned_cols=197 Identities=16% Similarity=0.097 Sum_probs=113.7
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC---cEEEEEEeCC---ccCHHHHHHHH--
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGF---DFVIWVVVSK---DLQLEKIQETI-- 226 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~---~~~~~~~~~~i-- 226 (892)
++|++..+..+...+. ...+.|+|++|+||||+|+.+++.. .....+ ...-|+.+.. ..+...+...+
T Consensus 156 iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg 234 (615)
T TIGR02903 156 IVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLG 234 (615)
T ss_pred ceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHhcC
Confidence 8999998888877666 5679999999999999999998765 222222 1233454432 11222221111
Q ss_pred -------------HHhcCCCC----------------CcccCCChHHHHHHHHHHhccCcEEEEEeccccc--ccccccc
Q 002691 227 -------------GKKIGLFD----------------GLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER--VDLTKVG 275 (892)
Q Consensus 227 -------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~ 275 (892)
+...+... +..... ....+..+.+.++++++.++-|+.|.. ..|..+.
T Consensus 235 ~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik 313 (615)
T TIGR02903 235 SVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIK 313 (615)
T ss_pred CccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchhhh
Confidence 11111110 000111 233466788888889999997777643 3466666
Q ss_pred cccCCCCCCCcEEEE--Eecchhh-cccc-cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCch
Q 002691 276 VPVPNSRNVASKVVF--TTRLLDV-CGLM-EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLP 351 (892)
Q Consensus 276 ~~l~~~~~~gs~Iii--TTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 351 (892)
..+... .+...|+| ||++... ...+ .....+.+.+++.+|.+.++.+.+....... -.++...|++++..-+
T Consensus 314 ~~~~~~-~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~gR 389 (615)
T TIGR02903 314 KLFEEG-APADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIEGR 389 (615)
T ss_pred hhcccC-ccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCcHH
Confidence 555554 44444555 5665432 1111 1224678999999999999998765322111 1345555555554445
Q ss_pred hHHHHHHHH
Q 002691 352 LALITIGRA 360 (892)
Q Consensus 352 Lai~~~g~~ 360 (892)
-|+..++..
T Consensus 390 raln~L~~~ 398 (615)
T TIGR02903 390 KAVNILADV 398 (615)
T ss_pred HHHHHHHHH
Confidence 555555433
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.5e-08 Score=99.97 Aligned_cols=142 Identities=13% Similarity=0.016 Sum_probs=63.5
Q ss_pred HHhcCCCCCcEEEEEecchhhHHHhhccchhhccceeeEecCCCCCcccccccccc-cCCCCEEeEecCCCccce-eecc
Q 002691 666 EELLGLKNLEVLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAE-LKHLNRLRIRDCEELEEL-KVDL 743 (892)
Q Consensus 666 ~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~l~~l-~~~~ 743 (892)
..+..-.+|+.|+++.++.-..-......+.+..|..|+|++|...+..-...+.+ -++|+.|+|+||...-.. ....
T Consensus 228 ~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t 307 (419)
T KOG2120|consen 228 NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST 307 (419)
T ss_pred HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH
Confidence 33444455555555544432211112222233456666666665432221001111 245666666665421100 0000
Q ss_pred ccccCCCCcCEEEEecCCCCCCC--cccccCCCccEEEEecCcchhhhhccCcccCCcccccCCCCccCcccEeecCcc
Q 002691 744 RQSCVFNSLQKVQISLCSKLKDL--TFLVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNPFAKLQHLELVCL 820 (892)
Q Consensus 744 ~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 820 (892)
.. ..+|+|..|+|++|..++.- ..+.+++.|++|.++.|..+..... ..++..|+|.+|++.+|
T Consensus 308 L~-~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~------------~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 308 LV-RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL------------LELNSKPSLVYLDVFGC 373 (419)
T ss_pred HH-HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe------------eeeccCcceEEEEeccc
Confidence 00 24566666666666555431 1234566666666666654321111 23455566666666655
No 61
>PRK08727 hypothetical protein; Validated
Probab=98.35 E-value=3.2e-06 Score=86.28 Aligned_cols=148 Identities=15% Similarity=0.104 Sum_probs=88.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
...+.|+|..|+|||+|++++++... .....+.|+++.+ ....+. ...+.+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~--------------------~~~~~l 91 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR--------------------DALEAL 91 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH--------------------HHHHHH
Confidence 45799999999999999999998862 2223556665432 111110 011112
Q ss_pred ccCcEEEEEecccccc---cccc-cccccCCCCCCCcEEEEEecchh---------hcccccccceEEccCCChHHHHHH
Q 002691 254 SKKKFVLLLDDLWERV---DLTK-VGVPVPNSRNVASKVVFTTRLLD---------VCGLMEAHKKFKVECLSDEDAWQL 320 (892)
Q Consensus 254 ~~kr~LlVlDdv~~~~---~~~~-~~~~l~~~~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 320 (892)
. +.-+||+||+.... .|.. +...+......|..||+||+... +...+.....+++++++.++-.++
T Consensus 92 ~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~i 170 (233)
T PRK08727 92 E-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAV 170 (233)
T ss_pred h-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHH
Confidence 1 33589999996321 2222 21111111134667999998532 122223345789999999999999
Q ss_pred HHHHhCCcccCCCCChHHHHHHHHHHhCCchhHH
Q 002691 321 FREKVGEETLNYHHDIPELAQMVAKECGGLPLAL 354 (892)
Q Consensus 321 f~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 354 (892)
+.+++...... -.++...-|++.++|-.-.+
T Consensus 171 L~~~a~~~~l~---l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 171 LRERAQRRGLA---LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHcCCC---CCHHHHHHHHHhCCCCHHHH
Confidence 99876543322 22466777888887665544
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1e-05 Score=88.47 Aligned_cols=186 Identities=18% Similarity=0.201 Sum_probs=102.5
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
++|.+..++.+.+.+. ...+.++|+.|+||||+|+.+++... -..... ..+...-....++.......
T Consensus 18 iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~~d 89 (363)
T PRK14961 18 IIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLCLD 89 (363)
T ss_pred ccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCCCc
Confidence 8999999999888887 45678999999999999999998762 110000 00000000111111110000
Q ss_pred CCcc---cCCChHHHHHHHHHHh-----ccCcEEEEEecccccc--cccccccccCCCCCCCcEEEEEecch-hhccc-c
Q 002691 234 DGLW---KNRSREEKALDIFKVL-----SKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVVFTTRLL-DVCGL-M 301 (892)
Q Consensus 234 ~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IiiTTR~~-~v~~~-~ 301 (892)
-... .....++ .+.+.+.+ .+++-++|+|++.... .+..+...+... ....++|++|.+. .+... .
T Consensus 90 ~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~-~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 90 LIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP-PQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred eEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC-CCCeEEEEEcCChHhhhHHHH
Confidence 0000 0011111 12222221 2455699999997533 244444444333 3456677766543 33221 1
Q ss_pred cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 302 EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 302 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
+....+++.+++.++..+.+...+...... -.++.+..|++.++|.|-.+..
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g~~---i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKESID---TDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 224578999999999998888765433211 1245677899999998864433
No 63
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=1e-06 Score=81.54 Aligned_cols=115 Identities=21% Similarity=0.220 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCC--CCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHH
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNR--PYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKV 252 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (892)
+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+..++.... ...+..+..+.+.+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK--SRQTSDELRSLLIDA 82 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS--STS-HHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc--ccCCHHHHHHHHHHH
Confidence 578999999999999999999876110 0013567799998888999999999999987653 235677777888888
Q ss_pred hccCcE-EEEEeccccc-c--cccccccccCCCCCCCcEEEEEecc
Q 002691 253 LSKKKF-VLLLDDLWER-V--DLTKVGVPVPNSRNVASKVVFTTRL 294 (892)
Q Consensus 253 l~~kr~-LlVlDdv~~~-~--~~~~~~~~l~~~~~~gs~IiiTTR~ 294 (892)
+...+. +||+||+..- . .++.+.. +.+ ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh--CCCCeEEEEECh
Confidence 876655 9999999653 1 1222222 222 356677776654
No 64
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=5.9e-06 Score=93.28 Aligned_cols=186 Identities=14% Similarity=0.125 Sum_probs=104.6
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
+||.+...+.+.+++. ...+.++|+.|+||||+|+.+++.... ..... ...++.-...+.|...-...
T Consensus 17 VIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC-~~~~~-------~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 17 LVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC-ETGVT-------STPCEVCATCKAVNEGRFID 88 (702)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-CcCCC-------CCCCccCHHHHHHhcCCCCc
Confidence 8999999999999888 467799999999999999999887621 11000 00000001111111100000
Q ss_pred C---CcccCCChHHHHHHHHHH-----hccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEecch-hhc-ccc
Q 002691 234 D---GLWKNRSREEKALDIFKV-----LSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTRLL-DVC-GLM 301 (892)
Q Consensus 234 ~---~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR~~-~v~-~~~ 301 (892)
- +.......++. +.+... ..+++-++|+|+|..- .....+...+... ..+.++|++|.+. .+. ...
T Consensus 89 viEIDAAs~~~VddI-Reli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP-P~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 89 LIEIDAASRTKVEDT-RELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP-PEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred eEEecccccCCHHHH-HHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC-CCCcEEEEEECChHhhhHHHH
Confidence 0 00001111111 111111 2356679999999743 2333444334333 3456777776653 222 112
Q ss_pred cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 302 EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 302 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
.....+++++++.++..+.+.+.+...... -..+....|++.++|.+-.+..
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI~---id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQIA---ADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 334678999999999999988876543322 2245677899999998755443
No 65
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.1e-05 Score=82.78 Aligned_cols=196 Identities=17% Similarity=0.189 Sum_probs=126.9
Q ss_pred ccchHHHHHHHHHhhc-------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhc
Q 002691 158 VVGLQSILEQVWSCLT-------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKI 230 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (892)
+.+||.+++++...|. ..-+.|+|.+|+|||+.++.+...........+ +++|.+-...+..+++..|++++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHHc
Confidence 7899999999999887 344999999999999999999998832222222 78999999999999999999999
Q ss_pred CCCCCcccCCChHHHHHHHHHHhc--cCcEEEEEecccccccc--cccccccCCCCCCCcEEEE--Eecchhh-------
Q 002691 231 GLFDGLWKNRSREEKALDIFKVLS--KKKFVLLLDDLWERVDL--TKVGVPVPNSRNVASKVVF--TTRLLDV------- 297 (892)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~--~~~~~~l~~~~~~gs~Iii--TTR~~~v------- 297 (892)
+.... ......+....+.+.+. ++.+++|||+++.-..- +-+...+......+++|++ .+-+...
T Consensus 98 ~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 98 GKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred CCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 73321 34556677777777775 58899999999753211 1111111111012454443 3333222
Q ss_pred -cccccccceEEccCCChHHHHHHHHHHhCC--cccCCCCChHHHHHHHHHHhCC-chhHHHHH
Q 002691 298 -CGLMEAHKKFKVECLSDEDAWQLFREKVGE--ETLNYHHDIPELAQMVAKECGG-LPLALITI 357 (892)
Q Consensus 298 -~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~ 357 (892)
...++. ..+..+|-+.+|-.+.+..++-. .....+++.-+++..++..-+| .-.||..+
T Consensus 176 v~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 176 VKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 222222 23788999999999999887642 1213344444555555554444 44555544
No 66
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=5.6e-06 Score=96.38 Aligned_cols=175 Identities=17% Similarity=0.198 Sum_probs=104.2
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCC-------------------CcEEEEEEeC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYG-------------------FDFVIWVVVS 214 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~vs 214 (892)
+||-+..++.+.+++. ...+.++|+.|+||||+|+.+++.... ... |.-++++..+
T Consensus 18 IIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~DviEidAa 96 (944)
T PRK14949 18 MVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLIEVDAA 96 (944)
T ss_pred hcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEEEeccc
Confidence 8999999999888887 445689999999999999999988621 111 0011112111
Q ss_pred CccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHH-HHhccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEE
Q 002691 215 KDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIF-KVLSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFT 291 (892)
Q Consensus 215 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiT 291 (892)
....+..+ ++| ...+. ....+++-++|+|++... ..+..++..+-.. ....++|++
T Consensus 97 s~~kVDdI-ReL-------------------ie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP-P~~vrFILa 155 (944)
T PRK14949 97 SRTKVDDT-REL-------------------LDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP-PEHVKFLLA 155 (944)
T ss_pred cccCHHHH-HHH-------------------HHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc-CCCeEEEEE
Confidence 11111111 111 11111 112467789999999643 3344443333322 334556655
Q ss_pred ec-chhhccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 292 TR-LLDVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 292 TR-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
|. ...+... ......|++++|+.++..+.+.+.+..... .-..+....|++.++|.|--+..+
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44 4444322 223467999999999999998886643321 123466788999999988655444
No 67
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.2e-05 Score=90.81 Aligned_cols=187 Identities=19% Similarity=0.112 Sum_probs=106.3
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
++|-+..++.+..++. ...+.++|++|+||||+|+.+++.. .-.+.+...+|.|.+... +..-....+..++..
T Consensus 16 vvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~~ 93 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEIDAA 93 (504)
T ss_pred hcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEeccc
Confidence 8999998888888877 4466999999999999999999886 211222223333322100 000000000000000
Q ss_pred CCcccCCChHHHHHHHHHHh-----ccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEec-chhhcccc-ccc
Q 002691 234 DGLWKNRSREEKALDIFKVL-----SKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTR-LLDVCGLM-EAH 304 (892)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR-~~~v~~~~-~~~ 304 (892)
.....+ ..+.+.+.+ .+++-++|+|+++.. ..+..+...+... .....+|++|. ...+.... ...
T Consensus 94 ----~~~~vd-~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep-~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 94 ----SNNSVE-DVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP-PEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred ----ccCCHH-HHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC-CCCEEEEEEcCChhhCChHHhcce
Confidence 011111 122222222 346679999999743 2344454444433 34455555554 33432222 234
Q ss_pred ceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHH
Q 002691 305 KKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALI 355 (892)
Q Consensus 305 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (892)
..+++.+++.++..+.+.+.+....... ..+....|++.++|.+--+.
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 5789999999999999988765433221 24667889999999886543
No 68
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.31 E-value=7.8e-06 Score=89.36 Aligned_cols=189 Identities=13% Similarity=0.107 Sum_probs=103.9
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc-EEEEEEeCCccCHHHHHHHHHH-----
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFD-FVIWVVVSKDLQLEKIQETIGK----- 228 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~----- 228 (892)
++|++..++.+..++. .+.+.++|++|+||||+|+.+++... ...+. ..+.++++...+ .....+..
T Consensus 17 ~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~ 92 (337)
T PRK12402 17 ILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDPRFA 92 (337)
T ss_pred hcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCcchh
Confidence 8999999999998888 44788999999999999999998862 12222 234444432110 00000000
Q ss_pred -hcCCCCCcccCCChHHHHHHHHHHh------ccCcEEEEEecccccc--cccccccccCCCCCCCcEEEEEecchh-hc
Q 002691 229 -KIGLFDGLWKNRSREEKALDIFKVL------SKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVVFTTRLLD-VC 298 (892)
Q Consensus 229 -~l~~~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IiiTTR~~~-v~ 298 (892)
.++... . ...........+.+.. .+.+-+||+||+.... ....+...+... ...+++|+||.+.. +.
T Consensus 93 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~-~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 93 HFLGTDK-R-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY-SRTCRFIIATRQPSKLI 169 (337)
T ss_pred hhhhhhh-h-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc-cCCCeEEEEeCChhhCc
Confidence 000000 0 0001111122211111 2345589999996432 122232222222 34567777775432 22
Q ss_pred ccc-cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 299 GLM-EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 299 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
..+ .....+.+.+++.++....+.+.+...... -..+....+++.++|.+-.+..
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 211 223467899999999999988876543322 2256778888999887655443
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.31 E-value=3.4e-06 Score=79.67 Aligned_cols=121 Identities=22% Similarity=0.167 Sum_probs=70.9
Q ss_pred cchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCC
Q 002691 159 VGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDG 235 (892)
Q Consensus 159 vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 235 (892)
+|++..++++...+. .+.+.|+|.+|+||||+|+.+++... ..-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 478888888888877 57899999999999999999999872 222456666655443322221111000
Q ss_pred cccCCChHHHHHHHHHHhccCcEEEEEeccccc-----ccccccccccCCC--CCCCcEEEEEecchh
Q 002691 236 LWKNRSREEKALDIFKVLSKKKFVLLLDDLWER-----VDLTKVGVPVPNS--RNVASKVVFTTRLLD 296 (892)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----~~~~~~~~~l~~~--~~~gs~IiiTTR~~~ 296 (892)
............++.+||+||++.. ..+......+... ...+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999842 1222222222110 025678888887543
No 70
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=3.4e-07 Score=90.57 Aligned_cols=109 Identities=22% Similarity=0.241 Sum_probs=68.5
Q ss_pred CCCCCcEEEecCccccccChhhcCcCcCCEEeccCCCccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEE
Q 002691 560 YMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLR 639 (892)
Q Consensus 560 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~ 639 (892)
..+.|..||||+|.|+.+-.++.-++.++.|++++|.|..+-. +..|++|++||+++|. +.++. +.-.+|-|.++|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~-Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECV-GWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhh-hhHhhhcCEeeee
Confidence 3456777888888777777777777788888888887776653 7777888888888774 44433 2244666667776
Q ss_pred eeccccccCCCCCCCCcccchhhhHHHHhcCCCCCcEEEEEecchhhHH
Q 002691 640 MFSSLYFKNSEVSGDGVLFARDELLVEELLGLKNLEVLEFTLTSSHVLQ 688 (892)
Q Consensus 640 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 688 (892)
+... ....+..|+.|-+|..|+++.+....++
T Consensus 359 La~N-----------------~iE~LSGL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 359 LAQN-----------------KIETLSGLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred hhhh-----------------hHhhhhhhHhhhhheeccccccchhhHH
Confidence 6521 1113334444555566666655544443
No 71
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.29 E-value=1.4e-06 Score=91.38 Aligned_cols=291 Identities=17% Similarity=0.197 Sum_probs=180.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC-cEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGF-DFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKV 252 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (892)
.+.+.++|.|||||||++-.+.+ . ...| +.+.++....--+...+.-.....++.+. .+.+.....+..+
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~~ 84 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVRR 84 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHHH
Confidence 67899999999999999999988 4 2344 46667776666666666666666677653 2234445567778
Q ss_pred hccCcEEEEEeccccccc-ccccccccCCCCCCCcEEEEEecchhhcccccccceEEccCCCh-HHHHHHHHHHhCCcc-
Q 002691 253 LSKKKFVLLLDDLWERVD-LTKVGVPVPNSRNVASKVVFTTRLLDVCGLMEAHKKFKVECLSD-EDAWQLFREKVGEET- 329 (892)
Q Consensus 253 l~~kr~LlVlDdv~~~~~-~~~~~~~l~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~-~ea~~Lf~~~a~~~~- 329 (892)
+.++|.++|+||..+..+ -....-.+-.+ ...-.|+.|+|.... ......+.+++|+. +++.++|...+....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~-~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGA-CPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHcc-chhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 889999999999854321 01111111122 334568888886532 23455778888886 489999988764322
Q ss_pred -cCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHH----HHHhhhcccCCCchhhhhhhhhhhcCCCc
Q 002691 330 -LNYHHDIPELAQMVAKECGGLPLALITIGRAMAYKTTPEEWRYAIQ----VLRRAASEFAGLGKEVYPLLKFSYDSLFN 404 (892)
Q Consensus 330 -~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~l~----~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 404 (892)
............+|.++..|.|++|...++..+. ..+.+--..++ .+.........-+......+.+||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 1122344677889999999999999999988876 33333322222 11111111111123677889999999987
Q ss_pred hhhhHHHhhhcCCCCCccccHHHHHHHHHhCCCCCCchHHHHHhhcchhHHHHHHHHhhcceee---cCCceeehHHHHH
Q 002691 405 DTIRSCLLYCSLYPEDYHISKSDLIDCWIGEGFLDENDRFEAQKQNQGYFTIGILVHACLLEEV---EDDKVKMHDVIRD 481 (892)
Q Consensus 405 ~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~ 481 (892)
..+.-|--++.|...+... ...|.+.|-..... .......+..+++++++... ....|+.-+-++.
T Consensus 240 -we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~------~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~ 308 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLG----LALAVAAGADVDVP------RYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRR 308 (414)
T ss_pred -HHHHHhcchhhhhhhhccc----HHHHHhcCCccccc------hHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHH
Confidence 6788888888888877654 23444443221100 12233346677888877643 3344555555666
Q ss_pred HHHHHHhh
Q 002691 482 MTLWIACE 489 (892)
Q Consensus 482 ~~~~i~~~ 489 (892)
|+..+..+
T Consensus 309 YalaeL~r 316 (414)
T COG3903 309 YALAELHR 316 (414)
T ss_pred HHHHHHHh
Confidence 65544433
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=4.3e-07 Score=101.60 Aligned_cols=122 Identities=33% Similarity=0.486 Sum_probs=70.8
Q ss_pred cceEEEEcccccccccccccCCCC-cccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCEEecc
Q 002691 515 VKIRRLSLMENHIEDLSNIYPRCP-HLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLS 593 (892)
Q Consensus 515 ~~l~~L~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 593 (892)
+.+..+++.++.+.+++....... +|+.|++++|.+..++.. +..+++|+.|++++|.+..+|...+.+.+|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 456666666666666655544442 666666666666555422 456666666666666666666655566666666666
Q ss_pred CCCccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEE
Q 002691 594 HTRIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLR 639 (892)
Q Consensus 594 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~ 639 (892)
++.+..+|..+..+..|+.|.++++.. ...+.. +.++.++..|.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~-~~~~~~l~~l~ 238 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSI-IELLSS-LSNLKNLSGLE 238 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcc-eecchh-hhhcccccccc
Confidence 666666666555555566666666532 222222 45555555554
No 73
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.28 E-value=2e-06 Score=90.99 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=61.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc--CHHHHHHHHHHhcCCCCCcccCCChHHHH-----
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL--QLEKIQETIGKKIGLFDGLWKNRSREEKA----- 246 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~----- 246 (892)
-...+|+|++|+||||||+.+|+.. .. .+|+.++||.+++.. ++.++++.|...+-... .+.......
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st---~d~~~~~~~~~a~~ 243 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST---FDEPAERHVQVAEM 243 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC---CCCCHHHHHHHHHH
Confidence 4578999999999999999999998 33 389999999999887 78888888863221111 111111111
Q ss_pred -HHHHHH--hccCcEEEEEeccc
Q 002691 247 -LDIFKV--LSKKKFVLLLDDLW 266 (892)
Q Consensus 247 -~~l~~~--l~~kr~LlVlDdv~ 266 (892)
-...+. -.+++++|++|++-
T Consensus 244 ~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 244 VIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEEChH
Confidence 111122 25799999999994
No 74
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=9.9e-06 Score=91.31 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=104.5
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCC--CCcEEEEEEeCCccCHHHHHHHHHHhc-
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPY--GFDFVIWVVVSKDLQLEKIQETIGKKI- 230 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~f~~~~wv~vs~~~~~~~~~~~i~~~l- 230 (892)
+||-+..++.+.+.+. ...+.++|..|+||||+|+.+.+....... ... + .+..+..-...+.|...-
T Consensus 18 VIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g----~-~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 18 LVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG----I-TAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc----C-CCCCCcccHHHHHHHcCCC
Confidence 8999999999999888 456789999999999999999887621000 000 0 000000011111111100
Q ss_pred ----CCCCCcccCCChHHHHHHHHHH----hccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEE-Eecchhhcc
Q 002691 231 ----GLFDGLWKNRSREEKALDIFKV----LSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVF-TTRLLDVCG 299 (892)
Q Consensus 231 ----~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iii-TTR~~~v~~ 299 (892)
..... .....++..+.+... ..++.-++|+|+++.. ..+..+...+-.- ..+.++|+ ||....+..
T Consensus 93 pDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP-P~~v~FILaTtep~kLlp 169 (700)
T PRK12323 93 VDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-PEHVKFILATTDPQKIPV 169 (700)
T ss_pred CcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC-CCCceEEEEeCChHhhhh
Confidence 00000 011122222211111 2356679999999753 2344444433332 33455554 555445532
Q ss_pred c-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 300 L-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 300 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
. .+....+.++.++.++..+.+.+.+...... ...+..+.|++.++|.|.....+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2234578999999999999888776533311 12355678999999998655444
No 75
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.26 E-value=7.5e-06 Score=89.92 Aligned_cols=165 Identities=18% Similarity=0.237 Sum_probs=96.0
Q ss_pred ccchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHH
Q 002691 158 VVGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEK 221 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (892)
+.|++..++++.+.+. .+-+.++|++|+|||++|+++++.. ...| +.+.. ..
T Consensus 124 i~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~----~~ 191 (364)
T TIGR01242 124 IGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG----SE 191 (364)
T ss_pred hCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----HH
Confidence 7899999999988764 2348999999999999999999987 3333 22221 11
Q ss_pred HHHHHHHhcCCCCCcccCCChHHHHHHHHHHh-ccCcEEEEEecccccc----------------cccccccccC--CCC
Q 002691 222 IQETIGKKIGLFDGLWKNRSREEKALDIFKVL-SKKKFVLLLDDLWERV----------------DLTKVGVPVP--NSR 282 (892)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------------~~~~~~~~l~--~~~ 282 (892)
+.... .+ ........+.+.. ...+.+|++||++... .+..+...+. ..
T Consensus 192 l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~- 258 (364)
T TIGR01242 192 LVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP- 258 (364)
T ss_pred HHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC-
Confidence 11110 00 0111222222222 3467899999996421 0111111111 11
Q ss_pred CCCcEEEEEecchhh-----cccccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCch
Q 002691 283 NVASKVVFTTRLLDV-----CGLMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLP 351 (892)
Q Consensus 283 ~~gs~IiiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 351 (892)
..+.+||.||..... .........+.++..+.++..++|+.++.........+ ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 245678888875432 22112345789999999999999998875443222222 355667776654
No 76
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=2.3e-06 Score=100.42 Aligned_cols=104 Identities=23% Similarity=0.309 Sum_probs=82.1
Q ss_pred cccEEEecCCccccccchhhcCCCCCcEEEecCcccc-ccChhhcCcCcCCEEeccCCCcc-ccchhhhcCCCCCEEecC
Q 002691 539 HLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLT-ELPSRISKLVSLQHLDLSHTRIK-ELPGELEILVNLKCLNLN 616 (892)
Q Consensus 539 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~ 616 (892)
.++.|+|++|.+....+..+..+++|+.|+|++|.+. .+|..++++++|++|+|++|++. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4678888888887666666888899999999999887 67888899999999999999887 788888999999999999
Q ss_pred CCcCccccchhhhcCCCcccEEEeec
Q 002691 617 HTMYLSVIPRQLISKFSMLHVLRMFS 642 (892)
Q Consensus 617 ~~~~l~~~p~~~i~~l~~L~~L~l~~ 642 (892)
+|.....+|..+-..+.++..+++..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CCcccccCChHHhhccccCceEEecC
Confidence 88877788876323334556666553
No 77
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=2.2e-05 Score=88.21 Aligned_cols=189 Identities=15% Similarity=0.107 Sum_probs=104.3
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcE-EEEEEeCCccCHHHHHHHHHHhcCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDF-VIWVVVSKDLQLEKIQETIGKKIGL 232 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (892)
+||-+..+..+...+. ...+-++|+.|+||||+|+.+++.... ...... --+..+ ..-.....|......
T Consensus 23 liGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc-~~~~~~~~~~~~C----~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 23 LQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC-SALITENTTIKTC----EQCTNCISFNNHNHP 97 (507)
T ss_pred hcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-ccccccCcCcCCC----CCChHHHHHhcCCCC
Confidence 7999999988888766 357889999999999999999987621 111000 000000 000001111110000
Q ss_pred CC---CcccCCChHHHHHHHHH----HhccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEE-Eecchhhcccc-
Q 002691 233 FD---GLWKNRSREEKALDIFK----VLSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVF-TTRLLDVCGLM- 301 (892)
Q Consensus 233 ~~---~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iii-TTR~~~v~~~~- 301 (892)
.- +.......++....+.. -+.+++-++|+|+++.- ..+..+...+... ...+.+|+ ||+...+....
T Consensus 98 Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-p~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 98 DIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-PPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred cEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-CCCEEEEEEeCChHHhhHHHH
Confidence 00 00001112222221111 12356779999999753 3355554444433 34556554 55554553322
Q ss_pred cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHH
Q 002691 302 EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALI 355 (892)
Q Consensus 302 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (892)
.....+++.+++.++....+.+.+....... ..+....|++.++|.+--+.
T Consensus 177 SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 177 SRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred hcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 2345789999999999999988875433211 24556779999999775443
No 78
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=6e-06 Score=83.44 Aligned_cols=139 Identities=18% Similarity=0.194 Sum_probs=86.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
.+.+.|+|..|+|||+|++.+++.. .. .+++.. .....+.. .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-~~-------~~i~~~------~~~~~~~~-----------------------~~ 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-DA-------LLIHPN------EIGSDAAN-----------------------AA 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-CC-------EEecHH------HcchHHHH-----------------------hh
Confidence 4579999999999999999988764 11 133221 11111111 11
Q ss_pred ccCcEEEEEeccccc----ccccccccccCCCCCCCcEEEEEecc---------hhhcccccccceEEccCCChHHHHHH
Q 002691 254 SKKKFVLLLDDLWER----VDLTKVGVPVPNSRNVASKVVFTTRL---------LDVCGLMEAHKKFKVECLSDEDAWQL 320 (892)
Q Consensus 254 ~~kr~LlVlDdv~~~----~~~~~~~~~l~~~~~~gs~IiiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~L 320 (892)
.+ -+|++||+... ..+..+...+. ..|..||+|++. ++....+.....+++++++.++-.++
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQV 161 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHH---hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHH
Confidence 11 27888999532 11222222222 346779998873 22333444557899999999999999
Q ss_pred HHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 321 FREKVGEETLNYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 321 f~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
+++++....... -+++..-|++.+.|..-++..+
T Consensus 162 L~~~~~~~~~~l---~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 162 IFKLFADRQLYV---DPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHHhhhhHHHHHHH
Confidence 999885533222 2567778888888877666643
No 79
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.23 E-value=8.8e-07 Score=99.12 Aligned_cols=197 Identities=27% Similarity=0.353 Sum_probs=123.7
Q ss_pred EEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCC-CCcEEEecCccccccChhhcCcCcCCEEeccCCCc
Q 002691 519 RLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMP-SLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRI 597 (892)
Q Consensus 519 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i 597 (892)
.+....+.+..-.......+.+..|.+.++.+..+++. ...+. +|+.|++++|.+..+|..++.+++|+.|+++.|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 35555555522222235557788888888888777764 34453 78888888888888887788888888888888888
Q ss_pred cccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHHhcCCCCCcEE
Q 002691 598 KELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEELLGLKNLEVL 677 (892)
Q Consensus 598 ~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L 677 (892)
..+|...+.+++|+.|+++++. +..+|.. ++.+..|++|.+.... . ...+..+..+.++..+
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~------~----------~~~~~~~~~~~~l~~l 237 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNNS------I----------IELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCCc------c----------eecchhhhhccccccc
Confidence 8888777788888888888885 6777774 4566667777766311 0 0122233334444433
Q ss_pred EEEecchhhHHHhhccchhhccceeeEecCCCCCcccccccccccCCCCEEeEecCCCccceeeccccccCCCCcCEEEE
Q 002691 678 EFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSLQKVQI 757 (892)
Q Consensus 678 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~L 757 (892)
.+..+..... ...+..+++|+.|+++++ .+.+++. . ..+.+|+.|++
T Consensus 238 ~l~~n~~~~~----------------------------~~~~~~l~~l~~L~~s~n-~i~~i~~--~--~~~~~l~~L~~ 284 (394)
T COG4886 238 ELSNNKLEDL----------------------------PESIGNLSNLETLDLSNN-QISSISS--L--GSLTNLRELDL 284 (394)
T ss_pred ccCCceeeec----------------------------cchhccccccceeccccc-ccccccc--c--cccCccCEEec
Confidence 3221111000 124556677888888775 4444433 2 25788888888
Q ss_pred ecCCCCCCCc
Q 002691 758 SLCSKLKDLT 767 (892)
Q Consensus 758 ~~c~~l~~l~ 767 (892)
++......++
T Consensus 285 s~n~~~~~~~ 294 (394)
T COG4886 285 SGNSLSNALP 294 (394)
T ss_pred cCccccccch
Confidence 8774444333
No 80
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=2.7e-06 Score=99.76 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=94.2
Q ss_pred ceEEEEccccccc-ccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCcccc-ccChhhcCcCcCCEEecc
Q 002691 516 KIRRLSLMENHIE-DLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLT-ELPSRISKLVSLQHLDLS 593 (892)
Q Consensus 516 ~l~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~ 593 (892)
.++.|+++++.+. .+|..+..+++|+.|++++|.+....+..++.+++|++|+|++|.+. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999886 46777899999999999999998666666899999999999999998 589999999999999999
Q ss_pred CCCcc-ccchhhhcC-CCCCEEecCCCcCccccc
Q 002691 594 HTRIK-ELPGELEIL-VNLKCLNLNHTMYLSVIP 625 (892)
Q Consensus 594 ~~~i~-~lp~~i~~l-~~L~~L~l~~~~~l~~~p 625 (892)
+|++. .+|..+..+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99888 889888764 578889998886555444
No 81
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.21 E-value=3.6e-06 Score=83.13 Aligned_cols=41 Identities=32% Similarity=0.441 Sum_probs=32.4
Q ss_pred ccchHHHHHHHHHhhc------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
||||+++++++...+. .+.+.|+|.+|+|||+|.+.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999993 7899999999999999999999887
No 82
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.6e-05 Score=88.26 Aligned_cols=176 Identities=19% Similarity=0.159 Sum_probs=102.2
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCC---C---------------CCcEEEEEEeCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRP---Y---------------GFDFVIWVVVSK 215 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~---------------~f~~~~wv~vs~ 215 (892)
+||-+..++.+...+. ...+.++|+.|+||||+|+.+++...... . .|...+++....
T Consensus 18 iiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas 97 (546)
T PRK14957 18 VAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS 97 (546)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc
Confidence 7999999999888887 34578999999999999999988652100 0 111222222212
Q ss_pred ccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHH-HhccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEE-E
Q 002691 216 DLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFK-VLSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVF-T 291 (892)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iii-T 291 (892)
...++++ .+....+.. -..+++-++|+|++... ..+..+...+... .....+|+ |
T Consensus 98 ~~gvd~i--------------------r~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-p~~v~fIL~T 156 (546)
T PRK14957 98 RTGVEET--------------------KEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-PEYVKFILAT 156 (546)
T ss_pred ccCHHHH--------------------HHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-CCCceEEEEE
Confidence 1122111 111111111 12456779999999643 2344444444333 34455554 5
Q ss_pred ecchhhccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchh-HHHHH
Q 002691 292 TRLLDVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPL-ALITI 357 (892)
Q Consensus 292 TR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 357 (892)
|....+... ......+++.+++.++....+.+.+..... .-..+....|++.++|.+- |+..+
T Consensus 157 td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 157 TDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 543334322 233467899999999988888775543221 1224556778999999664 44444
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.5e-05 Score=87.42 Aligned_cols=181 Identities=20% Similarity=0.219 Sum_probs=101.3
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCC-C-----------------CcEEEEEEeCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPY-G-----------------FDFVIWVVVSK 215 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~-----------------f~~~~wv~vs~ 215 (892)
+||.+.....+...+. ...+.++|++|+||||+|+.+++....... . +..+..+..+.
T Consensus 16 ivGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~ 95 (472)
T PRK14962 16 VVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS 95 (472)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc
Confidence 8999888888777776 355789999999999999999887521100 0 00112222221
Q ss_pred ccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEec
Q 002691 216 DLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTR 293 (892)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR 293 (892)
...+..+. +|.+.... ....+++-++|+|++..- .....+...+... .....+|++|.
T Consensus 96 ~~gid~iR-~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p-~~~vv~Ilatt 155 (472)
T PRK14962 96 NRGIDEIR-KIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP-PSHVVFVLATT 155 (472)
T ss_pred cCCHHHHH-HHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC-CCcEEEEEEeC
Confidence 11222111 11111100 012346679999999642 2333444343332 23344444444
Q ss_pred c-hhhccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCC-chhHHHHHHHHH
Q 002691 294 L-LDVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGG-LPLALITIGRAM 361 (892)
Q Consensus 294 ~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~g~~l 361 (892)
+ ..+... ......+++.+++.++....+.+.+...... -..+....|++.++| ++.|+..+-...
T Consensus 156 n~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~---i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 156 NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE---IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred ChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3 333222 2234578999999999998888876433211 124567778887765 566666665433
No 84
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.18 E-value=1.2e-05 Score=82.27 Aligned_cols=151 Identities=13% Similarity=0.101 Sum_probs=89.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
.+.+.|+|+.|+|||+|++.+++... .....+.|+++..... ... .+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~----------------------~~~----~~~~~~ 95 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW----------------------FVP----EVLEGM 95 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh----------------------hhH----HHHHHh
Confidence 56899999999999999999998862 2234566666543100 000 111122
Q ss_pred ccCcEEEEEeccccc---ccccccc-cccCCCCCCC-cEEEEEecchh---------hcccccccceEEccCCChHHHHH
Q 002691 254 SKKKFVLLLDDLWER---VDLTKVG-VPVPNSRNVA-SKVVFTTRLLD---------VCGLMEAHKKFKVECLSDEDAWQ 319 (892)
Q Consensus 254 ~~kr~LlVlDdv~~~---~~~~~~~-~~l~~~~~~g-s~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~ 319 (892)
.+ --+|++||+... ..|+... ..+......| .++|+||+... ....+....+++++++++++-.+
T Consensus 96 ~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~ 174 (235)
T PRK08084 96 EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQ 174 (235)
T ss_pred hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHH
Confidence 11 237899999642 2333221 1111100223 47899988542 22333445689999999999999
Q ss_pred HHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 320 LFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 320 Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
++.+++...... --+++..-|++.+.|..-++..+
T Consensus 175 ~l~~~a~~~~~~---l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 175 ALQLRARLRGFE---LPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHHHcCCC---CCHHHHHHHHHhhcCCHHHHHHH
Confidence 998866543222 22566777888887766555443
No 85
>PTZ00202 tuzin; Provisional
Probab=98.18 E-value=1.7e-05 Score=84.38 Aligned_cols=153 Identities=19% Similarity=0.153 Sum_probs=94.8
Q ss_pred cccchHHHHHHHHHhhc------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhc
Q 002691 157 LVVGLQSILEQVWSCLT------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKI 230 (892)
Q Consensus 157 ~~vGr~~~~~~l~~~l~------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (892)
.|+||+.++.++...|. .+++.|+|++|+|||||++.+.... . + ...++... +..+++..++.+|
T Consensus 263 ~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~----~-~qL~vNpr---g~eElLr~LL~AL 333 (550)
T PTZ00202 263 QFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G----M-PAVFVDVR---GTEDTLRSVVKAL 333 (550)
T ss_pred CCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C----c-eEEEECCC---CHHHHHHHHHHHc
Confidence 39999999999999886 5699999999999999999999775 2 1 13333333 6799999999999
Q ss_pred CCCCCcccCCChHHHHHHHHHHh-----c-cCcEEEEEecccccccccccc---cccCCCCCCCcEEEEEecchhhcc--
Q 002691 231 GLFDGLWKNRSREEKALDIFKVL-----S-KKKFVLLLDDLWERVDLTKVG---VPVPNSRNVASKVVFTTRLLDVCG-- 299 (892)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~~~~~~~---~~l~~~~~~gs~IiiTTR~~~v~~-- 299 (892)
+.+. .....++...|.+.+ . +++.+||+-=- +-..+..+. ..+... ..-|.|++----+.+.-
T Consensus 334 GV~p----~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~d-rr~ch~v~evpleslt~~~ 407 (550)
T PTZ00202 334 GVPN----VEACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACD-RRLCHVVIEVPLESLTIAN 407 (550)
T ss_pred CCCC----cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHcc-chhheeeeeehHhhcchhc
Confidence 9743 222344445554443 2 56777776432 111111110 111111 23456665433332211
Q ss_pred -cccccceEEccCCChHHHHHHHHHH
Q 002691 300 -LMEAHKKFKVECLSDEDAWQLFREK 324 (892)
Q Consensus 300 -~~~~~~~~~l~~L~~~ea~~Lf~~~ 324 (892)
....-.-|.+++++.++|.+.-.+.
T Consensus 408 ~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 408 TLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ccCccceeEecCCCCHHHHHHHHhhc
Confidence 1112245789999999998887665
No 86
>PLN03025 replication factor C subunit; Provisional
Probab=98.17 E-value=2.4e-05 Score=84.16 Aligned_cols=175 Identities=15% Similarity=0.133 Sum_probs=100.2
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc-EEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFD-FVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
++|.+..++.+..++. .+.+.++|++|+||||+|+.+++... ...|. .++-+..+...+...+ +.+++.+...
T Consensus 15 ~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~v-r~~i~~~~~~ 91 (319)
T PLN03025 15 IVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVV-RNKIKMFAQK 91 (319)
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHH-HHHHHHHHhc
Confidence 7898888888877766 45678999999999999999998862 12222 1222223332222222 1221111100
Q ss_pred CCcccCCChHHHHHHHHHHhccCcEEEEEecccccc--cccccccccCCCCCCCcEEEEEecch-hhccc-ccccceEEc
Q 002691 234 DGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVVFTTRLL-DVCGL-MEAHKKFKV 309 (892)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~l 309 (892)
.. ..-.++.-++|+|+++.-. ....+...+... ...+++|+++... .+... ......+++
T Consensus 92 ~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 92 KV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-SNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred cc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-cCCceEEEEeCCccccchhHHHhhhcccC
Confidence 00 0002356799999997532 222222222222 3456777766432 22211 112347899
Q ss_pred cCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHH
Q 002691 310 ECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLAL 354 (892)
Q Consensus 310 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 354 (892)
++++.++....+...+.......+ .+....|++.++|-.-.+
T Consensus 156 ~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 999999999998887754332222 456788889998876443
No 87
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.17 E-value=3.9e-05 Score=83.15 Aligned_cols=175 Identities=15% Similarity=0.154 Sum_probs=101.6
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe--CCccCHHHHHHHHHHhcCC
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVV--SKDLQLEKIQETIGKKIGL 232 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~i~~~l~~ 232 (892)
++|++..++.+..++. .+.+.++|.+|+||||+|+.+++.... ..+. ..++.+ +.......+...+ ..+..
T Consensus 19 ~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~--~~~~-~~~i~~~~~~~~~~~~~~~~i-~~~~~ 94 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG--EDWR-ENFLELNASDERGIDVIRNKI-KEFAR 94 (319)
T ss_pred hcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC--Cccc-cceEEeccccccchHHHHHHH-HHHHh
Confidence 8999999999999887 556899999999999999999988621 1221 122222 2222222111111 11100
Q ss_pred CCCcccCCChHHHHHHHHHHhccCcEEEEEecccccc--cccccccccCCCCCCCcEEEEEecch-hhccc-ccccceEE
Q 002691 233 FDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVVFTTRLL-DVCGL-MEAHKKFK 308 (892)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~ 308 (892)
... .-...+-++|+|+++.-. ....+...+... ...+++|+++... .+... ......++
T Consensus 95 ~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 95 TAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-SQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred cCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-CCCCeEEEEeCCccccchhHHHHhheee
Confidence 000 001235689999986431 222333333322 3446677766432 22111 12234689
Q ss_pred ccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 309 VECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 309 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
+.+++.++....+...+....... ..+....+++.++|.+--+..
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 999999999988888775433221 246678889999998765433
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=5.3e-05 Score=82.08 Aligned_cols=192 Identities=13% Similarity=0.052 Sum_probs=105.2
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCC-CCCcE-EEEEEeCCccCHHHHHHHHHHhcC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRP-YGFDF-VIWVVVSKDLQLEKIQETIGKKIG 231 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~-~~wv~vs~~~~~~~~~~~i~~~l~ 231 (892)
++|.+..++.+.+.+. ...+-++|+.|+||||+|..+++...... ..... ..=...-.....-...+.|... .
T Consensus 21 iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~-~ 99 (365)
T PRK07471 21 LFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG-A 99 (365)
T ss_pred ccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc-C
Confidence 8999999999998888 45688999999999999998888762111 00000 0000000000000111111111 0
Q ss_pred CCCC-----cc-c------CCChHHHHHHHHHHhc-----cCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEe
Q 002691 232 LFDG-----LW-K------NRSREEKALDIFKVLS-----KKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTT 292 (892)
Q Consensus 232 ~~~~-----~~-~------~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTT 292 (892)
.++- .. + ..-..+.++.+.+.+. +.+.++|+||++.. .....+...+..- ..++.+|++|
T Consensus 100 HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep-p~~~~~IL~t 178 (365)
T PRK07471 100 HGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP-PARSLFLLVS 178 (365)
T ss_pred CCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC-CCCeEEEEEE
Confidence 0000 00 0 0001122334444442 56779999999643 2233333333322 3456677777
Q ss_pred cchh-hccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002691 293 RLLD-VCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIG 358 (892)
Q Consensus 293 R~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 358 (892)
.+.. +... ......+.+.+++.++..+++.+..... . .+....+++.++|.|..+..+.
T Consensus 179 ~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~------~-~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 179 HAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL------P-DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC------C-HHHHHHHHHHcCCCHHHHHHHh
Confidence 6653 3221 2234578999999999999998764221 1 1222678999999998665543
No 89
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=5.7e-07 Score=91.47 Aligned_cols=85 Identities=25% Similarity=0.260 Sum_probs=45.6
Q ss_pred CCCCcccEEEecCCcccc----ccchhhcCCCCCcEEEecCcc----ccccChh-------hcCcCcCCEEeccCCCcc-
Q 002691 535 PRCPHLVTLFLNNNKLEV----ISSRFFHYMPSLKVLKLSHIQ----LTELPSR-------ISKLVSLQHLDLSHTRIK- 598 (892)
Q Consensus 535 ~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~----l~~lp~~-------i~~L~~L~~L~l~~~~i~- 598 (892)
..+..++.+++++|.+.. .....+.+.+.|+..+++.-- ..++|+. +-.+++|++||||.|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 344555666666664421 112224455566666666431 1123332 334557777777777443
Q ss_pred ----ccchhhhcCCCCCEEecCCCc
Q 002691 599 ----ELPGELEILVNLKCLNLNHTM 619 (892)
Q Consensus 599 ----~lp~~i~~l~~L~~L~l~~~~ 619 (892)
.+-.-+.++.+|++|.|.+|.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCC
Confidence 233345667777888777775
No 90
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.15 E-value=2e-05 Score=92.46 Aligned_cols=165 Identities=22% Similarity=0.261 Sum_probs=92.7
Q ss_pred ccchHHHHH---HHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcC
Q 002691 158 VVGLQSILE---QVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIG 231 (892)
Q Consensus 158 ~vGr~~~~~---~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (892)
++|.+..+. .+...+. ...+.++|++|+||||+|+.+++.. ...|.. +..+. ..+.+
T Consensus 30 ~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~---lna~~-~~i~d---------- 92 (725)
T PRK13341 30 FVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFSS---LNAVL-AGVKD---------- 92 (725)
T ss_pred hcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCccee---ehhhh-hhhHH----------
Confidence 788887764 3444444 5678899999999999999999876 333311 11110 00111
Q ss_pred CCCCcccCCChHHHHHHHHHHh--ccCcEEEEEecccc--cccccccccccCCCCCCCcEEEEE--ecchh--hcc-ccc
Q 002691 232 LFDGLWKNRSREEKALDIFKVL--SKKKFVLLLDDLWE--RVDLTKVGVPVPNSRNVASKVVFT--TRLLD--VCG-LME 302 (892)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~IiiT--TR~~~--v~~-~~~ 302 (892)
..+......+.+ .+++.+||+||++. ...++.+...+ ..|+.++|+ |.++. +.. ...
T Consensus 93 ----------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l----E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 93 ----------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV----ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred ----------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh----cCceEEEEEecCCChHhhhhhHhhc
Confidence 111111221222 24678999999964 23333333222 345556653 44432 111 112
Q ss_pred ccceEEccCCChHHHHHHHHHHhCCcc----cCCCCChHHHHHHHHHHhCCchhH
Q 002691 303 AHKKFKVECLSDEDAWQLFREKVGEET----LNYHHDIPELAQMVAKECGGLPLA 353 (892)
Q Consensus 303 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~----~~~~~~~~~~~~~i~~~c~glPLa 353 (892)
....+.+++|+.++...++.+.+.... .....-.++....|++.+.|.--.
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 245789999999999999988664100 001112245667788888886443
No 91
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2.4e-05 Score=86.05 Aligned_cols=186 Identities=15% Similarity=0.083 Sum_probs=103.6
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
+||-+..+..+..++. ...+.++|+.|+||||+|+.+++... -...... ..+..... ...+.......
T Consensus 20 vVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-ce~~~~~---~pCg~C~s----C~~i~~g~~~d 91 (484)
T PRK14956 20 VIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-CENPIGN---EPCNECTS----CLEITKGISSD 91 (484)
T ss_pred HhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-cccccCc---cccCCCcH----HHHHHccCCcc
Confidence 8999999998888888 33578999999999999999998862 1111000 00001111 11121111100
Q ss_pred CCcc---cCCChHHHHHHHHHH-----hccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEE-Eecchhhccc-c
Q 002691 234 DGLW---KNRSREEKALDIFKV-----LSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVF-TTRLLDVCGL-M 301 (892)
Q Consensus 234 ~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iii-TTR~~~v~~~-~ 301 (892)
-... .....+ ..+.+.+. ..++.-++|+|++..- ..+..+...+... .....+|. ||....+... .
T Consensus 92 viEIdaas~~gVd-~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP-p~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 92 VLEIDAASNRGIE-NIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP-PAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ceeechhhcccHH-HHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC-CCceEEEeecCChhhccHHHH
Confidence 0000 001111 11222222 2356679999999742 3355554444332 23444444 5544444322 2
Q ss_pred cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 302 EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 302 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
.....|.+.+++.++..+.+.+.+...... -..+....|++.++|.+--+..
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~---~e~eAL~~Ia~~S~Gd~RdAL~ 221 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQ---YDQEGLFWIAKKGDGSVRDMLS 221 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCChHHHHHH
Confidence 234579999999999988888876543321 2246678899999998854433
No 92
>PRK05642 DNA replication initiation factor; Validated
Probab=98.14 E-value=1.1e-05 Score=82.37 Aligned_cols=151 Identities=17% Similarity=0.239 Sum_probs=88.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLS 254 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (892)
..+.|+|..|+|||.|++++++... ..-..++|++..+ +... ...+.+.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhhh
Confidence 5789999999999999999998762 1124566776432 1110 012233333
Q ss_pred cCcEEEEEeccccc---ccccc-cccccCCCCCCCcEEEEEecchhh-c--------ccccccceEEccCCChHHHHHHH
Q 002691 255 KKKFVLLLDDLWER---VDLTK-VGVPVPNSRNVASKVVFTTRLLDV-C--------GLMEAHKKFKVECLSDEDAWQLF 321 (892)
Q Consensus 255 ~kr~LlVlDdv~~~---~~~~~-~~~~l~~~~~~gs~IiiTTR~~~v-~--------~~~~~~~~~~l~~L~~~ea~~Lf 321 (892)
+-. +||+||+... ..|+. +...+......|.+||+|++...- . ..+.....+++++++.++-.+.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 333 6788999632 23332 222221111346788998875322 1 12223457899999999999999
Q ss_pred HHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002691 322 REKVGEETLNYHHDIPELAQMVAKECGGLPLALITIG 358 (892)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 358 (892)
+.++.......+ +++..-|++++.|-.-++..+-
T Consensus 176 ~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 176 QLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 876643322222 4666777777777665554433
No 93
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=3.1e-06 Score=66.00 Aligned_cols=60 Identities=32% Similarity=0.529 Sum_probs=55.0
Q ss_pred cceEEEEcccccccccc-cccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccc
Q 002691 515 VKIRRLSLMENHIEDLS-NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQL 574 (892)
Q Consensus 515 ~~l~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 574 (892)
++++.|++.+|.+..+| ..|..+++|++|++++|.+..+++..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 36889999999999997 4678999999999999999999999999999999999999875
No 94
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=2.3e-05 Score=89.94 Aligned_cols=187 Identities=17% Similarity=0.151 Sum_probs=103.7
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
+||-+..++.+.+.+. ...+.++|..|+||||+|+.+++..... ..+. +..+..-...+.|...-...
T Consensus 18 ivGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~-~~~~-------~~pCg~C~~C~~i~~g~~~D 89 (647)
T PRK07994 18 VVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE-TGIT-------ATPCGECDNCREIEQGRFVD 89 (647)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc-cCCC-------CCCCCCCHHHHHHHcCCCCC
Confidence 8999999998888887 3447899999999999999998876211 1000 00111112222222110000
Q ss_pred CCcc---cCCChHHHHHHHHHH-----hccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEE-Eecchhhcc-cc
Q 002691 234 DGLW---KNRSREEKALDIFKV-----LSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVF-TTRLLDVCG-LM 301 (892)
Q Consensus 234 ~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iii-TTR~~~v~~-~~ 301 (892)
-... .....++ .+.+.+. ..+++-++|+|++... .....+...+-.- ....++|+ ||....+.. ..
T Consensus 90 ~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-p~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 90 LIEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred ceeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-CCCeEEEEecCCccccchHHH
Confidence 0000 0011111 1122222 2466779999999642 2334443333222 23455555 444444432 22
Q ss_pred cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 302 EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 302 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
.....|.+++++.++....+.+.+..... ....+....|++.++|.+--+..+
T Consensus 168 SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 168 SRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 23467899999999999988876533221 122455678999999988655444
No 95
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=5.6e-05 Score=82.64 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=97.9
Q ss_pred ccchHHHHHHHHHhhcc-------------cEEEEEcCCCCcHHHHHHHHHhhccCCC------------------CCCc
Q 002691 158 VVGLQSILEQVWSCLTA-------------GIIGLYGMGGVGKTTLLTLLNNKFLNRP------------------YGFD 206 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~~-------------~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~ 206 (892)
++|-+..++.+.+.+.. .-+-++|+.|+||||+|+.++....... .|.|
T Consensus 7 IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD 86 (394)
T PRK07940 7 LVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPD 86 (394)
T ss_pred ccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 78999888888888762 2478999999999999999987651110 1111
Q ss_pred EEEEEEeC-CccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccc
Q 002691 207 FVIWVVVS-KDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL-----SKKKFVLLLDDLWER--VDLTKVGVPV 278 (892)
Q Consensus 207 ~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l 278 (892)
. .++... .... .++ .+.+.+.+ .+++-++|+|+++.. .....+...+
T Consensus 87 ~-~~i~~~~~~i~-----------------------i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 87 V-RVVAPEGLSIG-----------------------VDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred E-EEeccccccCC-----------------------HHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 1 111110 1111 111 12222222 245568888999753 2223333333
Q ss_pred CCCCCCCcEEEEEecch-hhccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 279 PNSRNVASKVVFTTRLL-DVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 279 ~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
... ..+..+|++|.+. .+... .+....+.+++++.++..+.+.+..+. ..+.+..+++.++|.|.....
T Consensus 142 Eep-~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~--------~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEP-PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV--------DPETARRAARASQGHIGRARR 212 (394)
T ss_pred hcC-CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHH
Confidence 222 3456666666553 34322 223468899999999999888754321 135577899999999976554
Q ss_pred H
Q 002691 357 I 357 (892)
Q Consensus 357 ~ 357 (892)
+
T Consensus 213 l 213 (394)
T PRK07940 213 L 213 (394)
T ss_pred H
Confidence 4
No 96
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=4.5e-05 Score=87.21 Aligned_cols=172 Identities=13% Similarity=0.155 Sum_probs=101.5
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCC-------------------CcEEEEEEeC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYG-------------------FDFVIWVVVS 214 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~vs 214 (892)
+||.+..++.+.+++. ...+.++|..|+||||+|+.+++.... ... |.-++.+..+
T Consensus 18 IIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC-~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaA 96 (709)
T PRK08691 18 LVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC-ENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAA 96 (709)
T ss_pred HcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc-cCCCCCCCCcccHHHHHHhccCccceEEEecc
Confidence 8999999999999888 457899999999999999999887511 110 0011112111
Q ss_pred CccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHH----HhccCcEEEEEecccccc--cccccccccCCCCCCCcEE
Q 002691 215 KDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFK----VLSKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKV 288 (892)
Q Consensus 215 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~I 288 (892)
.... .+.....+.. -..+++-++|+|++.... ....+...+... ....++
T Consensus 97 s~~g-----------------------Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-p~~v~f 152 (709)
T PRK08691 97 SNTG-----------------------IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-PEHVKF 152 (709)
T ss_pred ccCC-----------------------HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-CCCcEE
Confidence 1111 1111111111 123566799999996432 122333333222 234566
Q ss_pred EEEecch-hhccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 289 VFTTRLL-DVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 289 iiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
|++|.+. .+... .+....+.+.+++.++....+.+.+...... -..+....|++.++|.+.-+..+
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~---id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA---YEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHhCCCHHHHHHH
Confidence 6666543 33211 1223467889999999999888776543322 12456788999999988554443
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.08 E-value=8.6e-05 Score=81.77 Aligned_cols=177 Identities=14% Similarity=0.186 Sum_probs=103.9
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCC-C------------------CCCcEEEEEEeC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNR-P------------------YGFDFVIWVVVS 214 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~f~~~~wv~vs 214 (892)
++|.+..++.+.+.+. ...+-++|++|+||||+|+.++...... . .+++. +++..+
T Consensus 16 iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~~~ 94 (355)
T TIGR02397 16 VIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEIDAA 94 (355)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEeecc
Confidence 7999999999998887 4567899999999999999998775211 0 12222 222221
Q ss_pred CccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEe
Q 002691 215 KDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTT 292 (892)
Q Consensus 215 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTT 292 (892)
....... .+++...+... -..+++-++|+|+++.. .....+...+... ...+.+|++|
T Consensus 95 ~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-~~~~~lIl~~ 154 (355)
T TIGR02397 95 SNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-PEHVVFILAT 154 (355)
T ss_pred ccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCC-ccceeEEEEe
Confidence 1111111 11111111100 02245568999998643 2233444444332 3456666666
Q ss_pred cchh-hccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002691 293 RLLD-VCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIG 358 (892)
Q Consensus 293 R~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 358 (892)
.+.. +... ......+++.++++++..+.+...+....... -.+.+..+++.++|.|..+....
T Consensus 155 ~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 155 TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHHHH
Confidence 5443 2221 12235788999999999888887664333111 24677888999999887665543
No 98
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=3.5e-05 Score=87.19 Aligned_cols=188 Identities=12% Similarity=0.111 Sum_probs=101.1
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
++|.+..++.+.+.+. ...+.++|+.|+||||+|+.+++..... . |... ..++.-...+.+.......
T Consensus 18 IIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~-~------~~~~-~~Cg~C~sCr~i~~~~h~D 89 (605)
T PRK05896 18 IIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL-N------PKDG-DCCNSCSVCESINTNQSVD 89 (605)
T ss_pred hcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC-C------CCCC-CCCcccHHHHHHHcCCCCc
Confidence 8999999999999886 4568899999999999999998876211 1 1100 0111111111111111000
Q ss_pred CCcc---cCCChHHHHHHHHHH-----hccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEe-cchhhcc-cc
Q 002691 234 DGLW---KNRSREEKALDIFKV-----LSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTT-RLLDVCG-LM 301 (892)
Q Consensus 234 ~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTT-R~~~v~~-~~ 301 (892)
-... .....++. +.+.+. ..+++-++|+|+++.. ..+..+...+... .....+|++| ....+.. ..
T Consensus 90 iieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP-p~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 90 IVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-PKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred eEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC-CCcEEEEEECCChHhhhHHHH
Confidence 0000 00111111 111111 1234457999999642 2333443333322 3345555444 4333322 12
Q ss_pred cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchh-HHHHHH
Q 002691 302 EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPL-ALITIG 358 (892)
Q Consensus 302 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~g 358 (892)
.....+++.+++.++....+...+....... ..+.+..+++.++|.+- |+..+-
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I---s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEKIKI---EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 2345789999999999988887664332111 24557788999999664 444433
No 99
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=4.4e-05 Score=86.52 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=102.0
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCC------------------CCCcEEEEEEeCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRP------------------YGFDFVIWVVVSK 215 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~vs~ 215 (892)
+||-+..++.+.+++. ...+-++|+.|+||||+|+.+++...... ..|.-++.+..+.
T Consensus 18 ivGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas 97 (509)
T PRK14958 18 VIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS 97 (509)
T ss_pred hcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc
Confidence 8999999999999997 45678999999999999999988762110 0111123333222
Q ss_pred ccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEec
Q 002691 216 DLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTR 293 (892)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR 293 (892)
...++++ +++++.+... -..++.-++|+|+|..- .....+...+... ....++|++|.
T Consensus 98 ~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-p~~~~fIlatt 157 (509)
T PRK14958 98 RTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-PSHVKFILATT 157 (509)
T ss_pred cCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-CCCeEEEEEEC
Confidence 2222222 1222221110 11356678999999742 2333343333332 34566666554
Q ss_pred c-hhhccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 294 L-LDVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 294 ~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
+ ..+... .+....+++++++.++....+.+.+...... -..+....|++.++|.+.-+..
T Consensus 158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~---~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE---FENAALDLLARAANGSVRDALS 219 (509)
T ss_pred ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHH
Confidence 3 333221 2224568899999998887776665433211 1234567788889988754443
No 100
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.07 E-value=1.4e-05 Score=85.28 Aligned_cols=91 Identities=16% Similarity=0.083 Sum_probs=62.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc--cCHHHHHHHHHHhcCCCCCcccCCChHHHHHHH--
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD--LQLEKIQETIGKKIGLFDGLWKNRSREEKALDI-- 249 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-- 249 (892)
-..++|+|++|+|||||++.+++.. . ..+|+..+||.+.+. .++.++++.+...+-...-..........+..+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4689999999999999999999997 3 348999999999866 789999999955432221100000101111111
Q ss_pred -HHH--hccCcEEEEEeccc
Q 002691 250 -FKV--LSKKKFVLLLDDLW 266 (892)
Q Consensus 250 -~~~--l~~kr~LlVlDdv~ 266 (892)
.+. -.|++++|++|++-
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 111 25799999999994
No 101
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=4.6e-05 Score=82.12 Aligned_cols=191 Identities=10% Similarity=0.057 Sum_probs=107.0
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCC-CCcEEEEEEeCCccCHHHHHHHHHHh---
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPY-GFDFVIWVVVSKDLQLEKIQETIGKK--- 229 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~~~~~~~~~i~~~--- 229 (892)
++|-+...+.+...+. ...+.|+|+.|+||||+|..+++....... .+... .....+......+.|...
T Consensus 25 l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~hP 101 (351)
T PRK09112 25 LFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGAHP 101 (351)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCCCC
Confidence 8999999999999888 346899999999999999999888622100 01110 001111111233333222
Q ss_pred ----cCCCCCc----c-cCCChHHHHHHHHHHhc-----cCcEEEEEeccccc--ccccccccccCCCCCCCcEE-EEEe
Q 002691 230 ----IGLFDGL----W-KNRSREEKALDIFKVLS-----KKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKV-VFTT 292 (892)
Q Consensus 230 ----l~~~~~~----~-~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~I-iiTT 292 (892)
+..+.+. . ..-..+ .+..+.+++. +++-++|+|+++.. .....+...+... ..+..+ ++|+
T Consensus 102 dl~~l~~~~~~~~~~~~~~I~vd-~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp-p~~~~fiLit~ 179 (351)
T PRK09112 102 NLLHITRPFDEKTGKFKTAITVD-EIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP-PARALFILISH 179 (351)
T ss_pred CEEEeecccccccccccccCCHH-HHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC-CCCceEEEEEC
Confidence 1000000 0 011122 2334444443 56779999999753 2233333333222 233444 4444
Q ss_pred cchhhcccc-cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002691 293 RLLDVCGLM-EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIG 358 (892)
Q Consensus 293 R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 358 (892)
+...+.... +....+++.+++.++..+.+.+.... . . -..+....+++.++|.|.....+.
T Consensus 180 ~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~---~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 180 SSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q---G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c---C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 433332211 22357899999999999999874321 1 1 124556789999999998766543
No 102
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=5.9e-05 Score=86.56 Aligned_cols=191 Identities=15% Similarity=0.172 Sum_probs=103.0
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCC-CCcEEEEEEeCCccCHHHHHHHHHHhcCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPY-GFDFVIWVVVSKDLQLEKIQETIGKKIGL 232 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (892)
+||-+..++.+.+++. ...+.++|..|+||||+|+.+++....... ...... ...++.-...+.|...-..
T Consensus 18 viGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~g~h~ 93 (618)
T PRK14951 18 MVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDSGRFV 93 (618)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHcCCCC
Confidence 8999988888888887 456789999999999999999777521100 000000 0011111112222110000
Q ss_pred CCCcc---cCCChHHHHHHHHHHh-----ccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEe-cchhhcc-c
Q 002691 233 FDGLW---KNRSREEKALDIFKVL-----SKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTT-RLLDVCG-L 300 (892)
Q Consensus 233 ~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTT-R~~~v~~-~ 300 (892)
..-.. .....++.. .+.+.. .++.-++|+|+|+.. ..+..+...+... ....++|++| ....+.. .
T Consensus 94 D~~eldaas~~~Vd~iR-eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP-P~~~~fIL~Ttd~~kil~TI 171 (618)
T PRK14951 94 DYTELDAASNRGVDEVQ-QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP-PEYLKFVLATTDPQKVPVTV 171 (618)
T ss_pred ceeecCcccccCHHHHH-HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC-CCCeEEEEEECCchhhhHHH
Confidence 00000 011111211 111211 245568999999753 2344444433332 3345566554 4334432 2
Q ss_pred ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 301 MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 301 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
......+++++++.++..+.+.+.+...... -..+....|++.++|.+--+..+
T Consensus 172 lSRc~~~~f~~Ls~eei~~~L~~i~~~egi~---ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 172 LSRCLQFNLRPMAPETVLEHLTQVLAAENVP---AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHhceeeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2334678999999999999888876543322 12456788899999977555443
No 103
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=9e-05 Score=82.62 Aligned_cols=175 Identities=15% Similarity=0.191 Sum_probs=103.8
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCC------------------CCCcEEEEEEeCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRP------------------YGFDFVIWVVVSK 215 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~vs~ 215 (892)
+||-+..++.+.+.+. ...+-++|+.|+||||+|+.++....... ..+.-++.+..+.
T Consensus 15 liGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas 94 (491)
T PRK14964 15 LVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS 94 (491)
T ss_pred hcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc
Confidence 8999998888888777 44788999999999999999987531100 0111223333333
Q ss_pred ccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEe-
Q 002691 216 DLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTT- 292 (892)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTT- 292 (892)
...++++. +|++.... .-..+++-++|+|++..- .....+...+... ....++|++|
T Consensus 95 ~~~vddIR-~Iie~~~~------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-p~~v~fIlatt 154 (491)
T PRK14964 95 NTSVDDIK-VILENSCY------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP-APHVKFILATT 154 (491)
T ss_pred CCCHHHHH-HHHHHHHh------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCC-CCCeEEEEEeC
Confidence 33333221 12111110 002346668999999642 2233444344333 3456666655
Q ss_pred cchhhccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHH
Q 002691 293 RLLDVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALI 355 (892)
Q Consensus 293 R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (892)
....+... ......+++.+++.++....+.+.+...... -..+....|++.++|.+-.+.
T Consensus 155 e~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~---i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 155 EVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE---HDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred ChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 33444322 2234578999999999999998877544322 124566789999998875443
No 104
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=2.6e-05 Score=87.25 Aligned_cols=167 Identities=11% Similarity=0.093 Sum_probs=101.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLS 254 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (892)
..+.|+|..|+|||+|++++++... ....-..+++++ ..++...+...++.. ......+.+.++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~-~~~~~~~v~yv~------~~~f~~~~~~~l~~~---------~~~~~~~~~~~~ 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIE-SNFSDLKVSYMS------GDEFARKAVDILQKT---------HKEIEQFKNEIC 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEE------HHHHHHHHHHHHHHh---------hhHHHHHHHHhc
Confidence 4689999999999999999999652 112223445553 345566666555321 012233444444
Q ss_pred cCcEEEEEecccccc---c-ccccccccCCCCCCCcEEEEEecchh---------hcccccccceEEccCCChHHHHHHH
Q 002691 255 KKKFVLLLDDLWERV---D-LTKVGVPVPNSRNVASKVVFTTRLLD---------VCGLMEAHKKFKVECLSDEDAWQLF 321 (892)
Q Consensus 255 ~kr~LlVlDdv~~~~---~-~~~~~~~l~~~~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf 321 (892)
+ .-+||+||+.... . .+.+...+......|..||+|+.... +...+...-.+.+++++.++-.+++
T Consensus 206 ~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 Q-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred c-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 3 4488899995321 1 12222222111134557888876432 1223334456789999999999999
Q ss_pred HHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHH
Q 002691 322 REKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGR 359 (892)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 359 (892)
.+++...... ..-.+++..-|++.++|.|-.+..+..
T Consensus 285 ~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 285 KKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9987543211 123367888899999999987766543
No 105
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.01 E-value=7.9e-05 Score=82.19 Aligned_cols=165 Identities=16% Similarity=0.247 Sum_probs=93.9
Q ss_pred ccchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHH
Q 002691 158 VVGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEK 221 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (892)
+.|++..++++.+.+. .+-|.++|++|+|||++|+++++.. ... |+.++. ..
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~----~~ 200 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG----SE 200 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----HH
Confidence 7899999999988764 3458899999999999999999986 222 222221 11
Q ss_pred HHHHHHHhcCCCCCcccCCChHHHHHHHHHHh-ccCcEEEEEecccccc------------c----ccccccccCCC-CC
Q 002691 222 IQETIGKKIGLFDGLWKNRSREEKALDIFKVL-SKKKFVLLLDDLWERV------------D----LTKVGVPVPNS-RN 283 (892)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~------------~----~~~~~~~l~~~-~~ 283 (892)
+. ... .. ........+.+.. ...+.+|++||++.-. . +..+...+... ..
T Consensus 201 l~----~~~-------~g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 201 LV----QKF-------IG-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred Hh----Hhh-------cc-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 11 111 00 1112222233322 3467899999997421 0 11111111110 02
Q ss_pred CCcEEEEEecchhhcc-c-c---cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCc
Q 002691 284 VASKVVFTTRLLDVCG-L-M---EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGL 350 (892)
Q Consensus 284 ~gs~IiiTTR~~~v~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 350 (892)
.+.+||.||...+... . . .....+.+++.+.++-.++|+.++.........++ ..+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 3566777776543321 1 1 12457899999999999999987754432222333 4455566554
No 106
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.01 E-value=3.2e-05 Score=84.02 Aligned_cols=104 Identities=19% Similarity=0.168 Sum_probs=72.1
Q ss_pred ccchHHHHHHHHHhhc-ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCc
Q 002691 158 VVGLQSILEQVWSCLT-AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGL 236 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 236 (892)
+++.+...+.+...+. .+.|.++|++|+|||++|+.+++.. .....|+.+.||++++.++..+....+.-. +. .
T Consensus 177 ~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v---g 251 (459)
T PRK11331 177 LFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV---G 251 (459)
T ss_pred ccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC-CC---C
Confidence 7888899999999988 7889999999999999999999987 445678899999999988877765432110 00 0
Q ss_pred ccCCChHHHHHHHHHHhc--cCcEEEEEecccc
Q 002691 237 WKNRSREEKALDIFKVLS--KKKFVLLLDDLWE 267 (892)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~ 267 (892)
.... ..-..+.+.+... +++++||+|++..
T Consensus 252 y~~~-~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 252 FRRK-DGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred eEec-CchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 0000 0111112222222 4689999999964
No 107
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.00 E-value=4.5e-05 Score=80.13 Aligned_cols=150 Identities=14% Similarity=0.108 Sum_probs=79.5
Q ss_pred ccchHHHHHHHHHhhc------------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCH
Q 002691 158 VVGLQSILEQVWSCLT------------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQL 219 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~------------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 219 (892)
++|.++.++++.++.. ..-+.++|.+|+||||+|+.++... .........-|+.++.
T Consensus 24 l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l-~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 24 LIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL-HRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH-HHcCCcccceEEEecH----
Confidence 6777776666555432 1257899999999999998887765 2111111112444442
Q ss_pred HHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccc-----------ccccccccccCCCCCCCcEE
Q 002691 220 EKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER-----------VDLTKVGVPVPNSRNVASKV 288 (892)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~gs~I 288 (892)
.++ ...+.. .+.... ..+.+.. ..-+|++|++..- +.+..+...+... ..+.+|
T Consensus 99 ~~l----~~~~~g-------~~~~~~-~~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~-~~~~~v 163 (284)
T TIGR02880 99 DDL----VGQYIG-------HTAPKT-KEILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ-RDDLVV 163 (284)
T ss_pred HHH----hHhhcc-------cchHHH-HHHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC-CCCEEE
Confidence 122 222211 111111 1222222 3368899999621 1122233333333 345566
Q ss_pred EEEecchhhccccc--------ccceEEccCCChHHHHHHHHHHhCC
Q 002691 289 VFTTRLLDVCGLME--------AHKKFKVECLSDEDAWQLFREKVGE 327 (892)
Q Consensus 289 iiTTR~~~v~~~~~--------~~~~~~l~~L~~~ea~~Lf~~~a~~ 327 (892)
|++|.......... ....+++++++.+|-.+++...+..
T Consensus 164 I~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 164 ILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 66665332211111 1346899999999999999887643
No 108
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.00 E-value=0.00013 Score=72.13 Aligned_cols=150 Identities=16% Similarity=0.153 Sum_probs=85.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCC-------------------CCCcEEEEEEe-CCccCHHHHHHHHHHhcCCC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRP-------------------YGFDFVIWVVV-SKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~~ 233 (892)
...+.++|+.|+||||+|+.+.+...... .+.|.. ++.. ......+.+ +++.+.+...
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~~~~i-~~i~~~~~~~ 91 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIKVDQV-RELVEFLSRT 91 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCCHHHH-HHHHHHHccC
Confidence 45788999999999999999988762110 122221 1111 111111111 1111111110
Q ss_pred CCcccCCChHHHHHHHHHHhccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEecch-hhccc-ccccceEEc
Q 002691 234 DGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTRLL-DVCGL-MEAHKKFKV 309 (892)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~l 309 (892)
-..+.+-++|+||+... ..+..+...+... ...+.+|++|++. .+... ......+.+
T Consensus 92 ------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~-~~~~~~il~~~~~~~l~~~i~sr~~~~~~ 152 (188)
T TIGR00678 92 ------------------PQESGRRVVIIEDAERMNEAAANALLKTLEEP-PPNTLFILITPSPEKLLPTIRSRCQVLPF 152 (188)
T ss_pred ------------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChHhChHHHHhhcEEeeC
Confidence 01245678999999653 2344444444333 4456677766643 22221 123457899
Q ss_pred cCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhH
Q 002691 310 ECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLA 353 (892)
Q Consensus 310 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 353 (892)
.+++.++..+.+.+. + . ..+.+..|++.++|.|..
T Consensus 153 ~~~~~~~~~~~l~~~-g-----i---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ-G-----I---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred CCCCHHHHHHHHHHc-C-----C---CHHHHHHHHHHcCCCccc
Confidence 999999998888776 1 1 146688999999998853
No 109
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.99 E-value=3.2e-05 Score=77.90 Aligned_cols=157 Identities=16% Similarity=0.142 Sum_probs=88.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
...+.|+|..|+|||.|.+++++...+ ...-..+++++ ..+....+...+.. .. ...+++.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~~~~~-------~~----~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFADALRD-------GE----IEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHHHHHT-------TS----HHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHHHHHc-------cc----chhhhhhh
Confidence 356899999999999999999998722 11223456654 33444444444321 11 12344444
Q ss_pred ccCcEEEEEecccccc---cccc----cccccCCCCCCCcEEEEEecchhh---------cccccccceEEccCCChHHH
Q 002691 254 SKKKFVLLLDDLWERV---DLTK----VGVPVPNSRNVASKVVFTTRLLDV---------CGLMEAHKKFKVECLSDEDA 317 (892)
Q Consensus 254 ~~kr~LlVlDdv~~~~---~~~~----~~~~l~~~~~~gs~IiiTTR~~~v---------~~~~~~~~~~~l~~L~~~ea 317 (892)
+ .-=+|++||+.... .|.. +...+. ..|.+||+|++...- ...+...-.+++++++.++-
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~---~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLI---ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH---HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHH---hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHH
Confidence 4 34478999996532 1222 222222 346789999964321 12233455789999999999
Q ss_pred HHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHH
Q 002691 318 WQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALI 355 (892)
Q Consensus 318 ~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (892)
..++.+.|...... --+++..-|++.+.+..-.+.
T Consensus 172 ~~il~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 172 RRILQKKAKERGIE---LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHH
Confidence 99999988654422 224566666666655544443
No 110
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.99 E-value=4.5e-05 Score=79.54 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=76.9
Q ss_pred ccchHHHHHHHHHhhc------------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCH
Q 002691 158 VVGLQSILEQVWSCLT------------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQL 219 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~------------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 219 (892)
++|.+..++++.+... ...+.++|++|+||||+|+.+++..... ..-....++.++..
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA--- 83 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH---
Confidence 7888877766654432 2457899999999999999998865111 11111123333221
Q ss_pred HHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccccc----------cccccccccCCCCCCCcEEE
Q 002691 220 EKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV----------DLTKVGVPVPNSRNVASKVV 289 (892)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~~~l~~~~~~gs~Ii 289 (892)
++.. .. ......... .+.+.. ..-+|++|++..-. ....+...+... .....+|
T Consensus 84 -~l~~----~~-------~g~~~~~~~-~~~~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~-~~~~~vi 147 (261)
T TIGR02881 84 -DLVG----EY-------IGHTAQKTR-EVIKKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN-RNEFVLI 147 (261)
T ss_pred -Hhhh----hh-------ccchHHHHH-HHHHhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc-CCCEEEE
Confidence 1111 10 011111111 122221 23488999996411 122232222222 2233455
Q ss_pred EEecchhh----------cccccccceEEccCCChHHHHHHHHHHhCC
Q 002691 290 FTTRLLDV----------CGLMEAHKKFKVECLSDEDAWQLFREKVGE 327 (892)
Q Consensus 290 iTTR~~~v----------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 327 (892)
+++...+. ...+ ...+.+++++.+|-.+++.+.+..
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred ecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHH
Confidence 55543222 1111 245789999999999999887654
No 111
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=8.7e-06 Score=58.03 Aligned_cols=39 Identities=38% Similarity=0.632 Sum_probs=21.5
Q ss_pred CCcEEEecCccccccChhhcCcCcCCEEeccCCCccccc
Q 002691 563 SLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELP 601 (892)
Q Consensus 563 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp 601 (892)
+|++|++++|.++.+|..+++|++|++|++++|+|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666655555556666666666666555443
No 112
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=8.5e-05 Score=84.85 Aligned_cols=174 Identities=14% Similarity=0.137 Sum_probs=99.9
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCC------------------CCcEEEEEEeCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPY------------------GFDFVIWVVVSK 215 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~vs~ 215 (892)
+||-+..++.+.+++. ...+.++|+.|+||||+|+.+++....... .|.-++++..+.
T Consensus 18 ivGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~ 97 (527)
T PRK14969 18 LVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS 97 (527)
T ss_pred hcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc
Confidence 8999999999988887 446789999999999999999877621000 011112222221
Q ss_pred ccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccccc--cccccccccCCCCCCCcEEEEEec
Q 002691 216 DLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVVFTTR 293 (892)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IiiTTR 293 (892)
...++++ ++++..... .-..+++-++|+|+++... ....+...+... .....+|++|.
T Consensus 98 ~~~vd~i-r~l~~~~~~------------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep-p~~~~fIL~t~ 157 (527)
T PRK14969 98 NTQVDAM-RELLDNAQY------------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP-PEHVKFILATT 157 (527)
T ss_pred cCCHHHH-HHHHHHHhh------------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCC-CCCEEEEEEeC
Confidence 1111111 111111110 0113567799999996432 233333333332 34456665554
Q ss_pred c-hhhccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHH
Q 002691 294 L-LDVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLAL 354 (892)
Q Consensus 294 ~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 354 (892)
+ +.+... ......+++++++.++..+.+.+.+...... ...+....|++.++|.+--+
T Consensus 158 d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 158 DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 3 333321 2224578999999999988887766433211 22455678899999977533
No 113
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.97 E-value=4.4e-05 Score=78.02 Aligned_cols=151 Identities=14% Similarity=0.095 Sum_probs=86.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
...+.|+|..|+|||+||+.+++.... .. ..+.+++..... ..+ ...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~--~~-~~~~~i~~~~~~------~~~------------------------~~~ 88 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASY--GG-RNARYLDAASPL------LAF------------------------DFD 88 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEehHHhH------HHH------------------------hhc
Confidence 467899999999999999999987521 11 234445433211 000 011
Q ss_pred ccCcEEEEEecccccc--cccccccccCCCCCCCc-EEEEEecchhhcc--------cccccceEEccCCChHHHHHHHH
Q 002691 254 SKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVAS-KVVFTTRLLDVCG--------LMEAHKKFKVECLSDEDAWQLFR 322 (892)
Q Consensus 254 ~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs-~IiiTTR~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~ 322 (892)
...-+||+||+.... ....+...+......|. .||+|++...... .+.....++++++++++-..++.
T Consensus 89 -~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~ 167 (227)
T PRK08903 89 -PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALK 167 (227)
T ss_pred -ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHH
Confidence 223478899996432 11222222221102344 4666666433221 22223578999999988777776
Q ss_pred HHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHHHH
Q 002691 323 EKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGRAM 361 (892)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l 361 (892)
+.+...... --++....+++.+.|.+..+..+-..+
T Consensus 168 ~~~~~~~v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 168 AAAAERGLQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 654322212 224677778888899888877666544
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00011 Score=84.43 Aligned_cols=190 Identities=13% Similarity=0.120 Sum_probs=104.1
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc--EEEEEEeCCccCHHHHHHHHHHhcC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFD--FVIWVVVSKDLQLEKIQETIGKKIG 231 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (892)
+||.+..++.+.+.+. ...+.++|+.|+||||+|+.+++..... .... ...+ ..+..-.-.+.|...-.
T Consensus 26 liGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~-~~~~~~~~~~----~~cg~c~~C~~i~~g~h 100 (598)
T PRK09111 26 LIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE-GPDGDGGPTI----DLCGVGEHCQAIMEGRH 100 (598)
T ss_pred hcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC-CccccCCCcc----ccCcccHHHHHHhcCCC
Confidence 8999999999999887 4568899999999999999998876211 1000 0000 00000011112221110
Q ss_pred CCCCcc---cCCChHHHHHHHHHHh-----ccCcEEEEEecccccc--cccccccccCCCCCCCcEEEEEe-cchhhccc
Q 002691 232 LFDGLW---KNRSREEKALDIFKVL-----SKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVVFTT-RLLDVCGL 300 (892)
Q Consensus 232 ~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IiiTT-R~~~v~~~ 300 (892)
..--.. .....++. +.+.+.+ .+++-++|+|++.... ....+...+..- ..++++|++| ....+...
T Consensus 101 ~Dv~e~~a~s~~gvd~I-ReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-p~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 101 VDVLEMDAASHTGVDDI-REIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP-PPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CceEEecccccCCHHHH-HHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-CCCeEEEEEeCChhhhhHH
Confidence 000000 01112221 1222222 2456689999996432 233443333332 3456666544 43343322
Q ss_pred -ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 301 -MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 301 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
......+++..++.++....+.+.+....... ..+....|++.++|.+.-+...
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 22345789999999999999888765333111 2366788899999988665543
No 115
>CHL00181 cbbX CbbX; Provisional
Probab=97.96 E-value=0.0001 Score=77.36 Aligned_cols=150 Identities=14% Similarity=0.121 Sum_probs=79.3
Q ss_pred ccchHHHHHHHHHhhc------------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCH
Q 002691 158 VVGLQSILEQVWSCLT------------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQL 219 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~------------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 219 (892)
++|.+..+++|.++.. ...+.++|.+|+||||+|+.+++.. .....-...-|+.++..
T Consensus 25 l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~~--- 100 (287)
T CHL00181 25 LVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTRD--- 100 (287)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecHH---
Confidence 6777666665544432 1247899999999999999998865 11111111124444421
Q ss_pred HHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccc-----------ccccccccccCCCCCCCcEE
Q 002691 220 EKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER-----------VDLTKVGVPVPNSRNVASKV 288 (892)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~gs~I 288 (892)
++. ..... ...... ..+.+.. ..-+|++|++... +....+...+.+. ..+.+|
T Consensus 101 -~l~----~~~~g-------~~~~~~-~~~l~~a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~-~~~~~v 164 (287)
T CHL00181 101 -DLV----GQYIG-------HTAPKT-KEVLKKA--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ-RDDLVV 164 (287)
T ss_pred -HHH----HHHhc-------cchHHH-HHHHHHc--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC-CCCEEE
Confidence 222 21111 111111 1122222 2349999999641 1112222222233 345667
Q ss_pred EEEecchhhcccc--------cccceEEccCCChHHHHHHHHHHhCC
Q 002691 289 VFTTRLLDVCGLM--------EAHKKFKVECLSDEDAWQLFREKVGE 327 (892)
Q Consensus 289 iiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a~~ 327 (892)
|+++....+.... .....+.+++++.+|..+++...+..
T Consensus 165 I~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 165 IFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 7776543332111 12346899999999999998887654
No 116
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00012 Score=87.06 Aligned_cols=185 Identities=13% Similarity=0.097 Sum_probs=101.3
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
+||.+..++.|...+. ...+.++|..|+||||+|+.+++...... .... ..++.-...+.|...-...
T Consensus 17 iiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~-~~~~-------~pCg~C~sC~~~~~g~~~~ 88 (824)
T PRK07764 17 VIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVE-GPTS-------TPCGECDSCVALAPGGPGS 88 (824)
T ss_pred hcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCccc-CCCC-------CCCcccHHHHHHHcCCCCC
Confidence 8999999999988887 45688999999999999999988762111 1000 0000000011111000000
Q ss_pred CCc--c---cCCChHHHHHHHHHH-----hccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEe-cchhhccc
Q 002691 234 DGL--W---KNRSREEKALDIFKV-----LSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTT-RLLDVCGL 300 (892)
Q Consensus 234 ~~~--~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTT-R~~~v~~~ 300 (892)
.+. + .....++. +.+.+. ..+++-++|+|+++.. ..+..++..+..- ...+.+|++| ....+...
T Consensus 89 ~dv~eidaas~~~Vd~i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-P~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 89 LDVTEIDAASHGGVDDA-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP-PEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred CcEEEecccccCCHHHH-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC-CCCeEEEEEeCChhhhhHH
Confidence 000 0 00111111 112221 2356668999999753 3344444444433 3445555555 44444332
Q ss_pred -ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHH
Q 002691 301 -MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALI 355 (892)
Q Consensus 301 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (892)
......|++..++.++..+.+.+.+...... -..+....|++.++|.+..+.
T Consensus 167 IrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 167 IRSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred HHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 2335678999999999988887765433211 123456788999999885443
No 117
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=8.9e-05 Score=82.15 Aligned_cols=193 Identities=13% Similarity=0.116 Sum_probs=104.4
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEE-eCCccCHHHHHHHHHHhcCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVV-VSKDLQLEKIQETIGKKIGL 232 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~~l~~ 232 (892)
++|.+..++.+.+++. ...+.++|+.|+||||+|..+++.... ........|.. +...+..-..-+.+......
T Consensus 18 iiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c-~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~ 96 (397)
T PRK14955 18 ITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDADYLQEVTEPCGECESCRDFDAGTSL 96 (397)
T ss_pred ccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC-CCCcCcccccccCCCCCCCCHHHHHHhcCCCC
Confidence 8999998888888887 345789999999999999999887621 11111000110 00111111111111111100
Q ss_pred CCCcc---cCCChHHHHHHHHHHh-----ccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEe-cchhhcccc
Q 002691 233 FDGLW---KNRSREEKALDIFKVL-----SKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTT-RLLDVCGLM 301 (892)
Q Consensus 233 ~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTT-R~~~v~~~~ 301 (892)
.-..+ .....++. ..+.+.+ .+++-++|+|++... ..+..+...+.+. ...+.+|++| +...+....
T Consensus 97 n~~~~~~~~~~~id~I-r~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep-~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 97 NISEFDAASNNSVDDI-RLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP-PPHAIFIFATTELHKIPATI 174 (397)
T ss_pred CeEeecccccCCHHHH-HHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC-CCCeEEEEEeCChHHhHHHH
Confidence 00000 00111222 2233333 345668999999643 2455554444433 3456666554 434443221
Q ss_pred -cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 302 -EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 302 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
.....+++.+++.++..+.+...+...... -..+.+..|++.++|.+--+..
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~---i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEAEGIS---VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 223568999999999988887766432211 2256788899999997754433
No 118
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=3.9e-05 Score=82.41 Aligned_cols=63 Identities=19% Similarity=0.320 Sum_probs=36.2
Q ss_pred cCCCCCcEEEecCccccccChhhcCcCcCCEEeccCC-CccccchhhhcCCCCCEEecCCCcCccccch
Q 002691 559 HYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHT-RIKELPGELEILVNLKCLNLNHTMYLSVIPR 626 (892)
Q Consensus 559 ~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~ 626 (892)
..+.+++.|++++|.++.+|. + ..+|+.|.+++| +++.+|..+ ..+|+.|++++|..+..+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 345566666666666666662 1 235666666665 455566444 24667777766654555554
No 119
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00012 Score=83.36 Aligned_cols=191 Identities=14% Similarity=0.137 Sum_probs=105.3
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
++|-+..++.+.+.+. ...+.++|+.|+||||+|+.+++.... ...... ..++.-...+.|.......
T Consensus 18 IiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C-~~~~~~-------~pCg~C~sC~~i~~g~hpD 89 (624)
T PRK14959 18 VAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC-ETAPTG-------EPCNTCEQCRKVTQGMHVD 89 (624)
T ss_pred hcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc-cCCCCC-------CCCcccHHHHHHhcCCCCc
Confidence 7898888888888777 456889999999999999999887621 110000 0011111111111110000
Q ss_pred CCcc---cCCChHHHHHHHHHH-----hccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEecc-hhhccc-c
Q 002691 234 DGLW---KNRSREEKALDIFKV-----LSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTRL-LDVCGL-M 301 (892)
Q Consensus 234 ~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR~-~~v~~~-~ 301 (892)
.... .....++ ++.+.+. ..+++-+||+|++... ..+..+...+... .....+|++|.+ ..+... .
T Consensus 90 v~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP-~~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 90 VVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP-PARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred eEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc-CCCEEEEEecCChhhhhHHHH
Confidence 0000 0011111 1222222 2356679999999643 2334444433322 234555555544 444322 2
Q ss_pred cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCch-hHHHHHHHHH
Q 002691 302 EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLP-LALITIGRAM 361 (892)
Q Consensus 302 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~g~~l 361 (892)
.....+++++++.++....+...+...... -..+....|++.++|.+ .|+..+...+
T Consensus 168 SRcq~i~F~pLs~~eL~~~L~~il~~egi~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLGREGVD---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhccccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 234578999999999998888766433311 22466788999999964 6766665544
No 120
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00022 Score=78.74 Aligned_cols=174 Identities=14% Similarity=0.201 Sum_probs=99.1
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCC-----CCCCcEE-EEEEeCCccCHHHHHHHHH
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNR-----PYGFDFV-IWVVVSKDLQLEKIQETIG 227 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~-~wv~vs~~~~~~~~~~~i~ 227 (892)
++|.+..++.+.+.+. .+.+.++|++|+||||+|+.+.+..... ...|... +-+......+...+. .+.
T Consensus 19 iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~-~l~ 97 (367)
T PRK14970 19 VVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIR-NLI 97 (367)
T ss_pred cCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHH-HHH
Confidence 8999999999999887 4578899999999999999998876211 1112111 111111111111111 111
Q ss_pred HhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccccc--cccccccccCCCCCCCcEEEEEe-cchhhccc-ccc
Q 002691 228 KKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVVFTT-RLLDVCGL-MEA 303 (892)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IiiTT-R~~~v~~~-~~~ 303 (892)
+.+... -..+++-++|+|++.... .+..+...+... .....+|++| +...+... ...
T Consensus 98 ~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-~~~~~~Il~~~~~~kl~~~l~sr 158 (367)
T PRK14970 98 DQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-PAHAIFILATTEKHKIIPTILSR 158 (367)
T ss_pred HHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-CCceEEEEEeCCcccCCHHHHhc
Confidence 111100 112455689999986432 234443333222 3345555554 33333221 223
Q ss_pred cceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHH
Q 002691 304 HKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLAL 354 (892)
Q Consensus 304 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 354 (892)
...++++++++++....+...+....... ..+....+++.++|.+-.+
T Consensus 159 ~~~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 159 CQIFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADGALRDA 206 (367)
T ss_pred ceeEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 35789999999999988887665433222 2467788888898866533
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00019 Score=82.07 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=101.9
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
+||.+..++.+.+++. ...+.++|+.|+||||+|+.+++..... ...+. ..++.-...+.|...-+..
T Consensus 15 ivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~~-------~pCg~C~~C~~i~~~~~~~ 86 (584)
T PRK14952 15 VVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA-QGPTA-------TPCGVCESCVALAPNGPGS 86 (584)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-cCCCC-------CcccccHHHHHhhcccCCC
Confidence 8999999999999888 3457899999999999999999876211 10000 0000001111111000000
Q ss_pred CCc--c---cCCChHHHHHHHHHH-----hccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEE-Eecchhhccc
Q 002691 234 DGL--W---KNRSREEKALDIFKV-----LSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVF-TTRLLDVCGL 300 (892)
Q Consensus 234 ~~~--~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iii-TTR~~~v~~~ 300 (892)
.+. . .....++. +.+.+. ..+++-++|+|++... .....+...+... .....+|+ ||....+...
T Consensus 87 ~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp-p~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 87 IDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP-PEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred ceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC-CCCeEEEEEeCChHhhHHH
Confidence 000 0 00111111 112221 1345668999998632 2333443334333 33455554 5444444322
Q ss_pred -ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchh-HHHHHHH
Q 002691 301 -MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPL-ALITIGR 359 (892)
Q Consensus 301 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~g~ 359 (892)
.+....|++.+++.++..+.+.+.+...... -..+....|++.++|.+- |+..+-.
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~---i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICEQEGVV---VDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2234679999999999988887765433311 124566778999999774 4444433
No 122
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.89 E-value=7.5e-06 Score=83.53 Aligned_cols=86 Identities=24% Similarity=0.254 Sum_probs=62.6
Q ss_pred hcCCCCCcEEEecCccccc-----cChhhcCcCcCCEEeccCC---C-ccccchh-------hhcCCCCCEEecCCCcCc
Q 002691 558 FHYMPSLKVLKLSHIQLTE-----LPSRISKLVSLQHLDLSHT---R-IKELPGE-------LEILVNLKCLNLNHTMYL 621 (892)
Q Consensus 558 ~~~l~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~---~-i~~lp~~-------i~~l~~L~~L~l~~~~~l 621 (892)
+..+..+..++|++|.+.. +...+.+.++|+..+++.- . ..++|.. +-.+++|+.|+||+|-+-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 5668889999999997763 5566778889999999873 2 2356655 345679999999999654
Q ss_pred cccchh---hhcCCCcccEEEeecc
Q 002691 622 SVIPRQ---LISKFSMLHVLRMFSS 643 (892)
Q Consensus 622 ~~~p~~---~i~~l~~L~~L~l~~~ 643 (892)
...+.+ ++++++.|++|.+..|
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcC
Confidence 443332 4677888999888753
No 123
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.89 E-value=0.0001 Score=81.30 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=85.8
Q ss_pred ccchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHH
Q 002691 158 VVGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEK 221 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (892)
+.|.+..++++.+.+. .+-+.++|++|+|||++|+++++.. ...| +.+... .
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s----e 252 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS----E 252 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc----h
Confidence 5789999988888764 3468899999999999999999986 3333 222111 1
Q ss_pred HHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccccc----------------ccccccccCC-CCCC
Q 002691 222 IQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERVD----------------LTKVGVPVPN-SRNV 284 (892)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~~~~~l~~-~~~~ 284 (892)
+. ... ...........+.....+.+.+|+||+++.... +..+...+.. ....
T Consensus 253 L~----~k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 LI----QKY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred hh----hhh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 11 110 011111122222222345788999999863210 0111111110 0023
Q ss_pred CcEEEEEecchhhccc-----ccccceEEccCCChHHHHHHHHHHhCCc
Q 002691 285 ASKVVFTTRLLDVCGL-----MEAHKKFKVECLSDEDAWQLFREKVGEE 328 (892)
Q Consensus 285 gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 328 (892)
+.+||.||...+.... ......+.++..+.++..++|..++...
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 5678888875544221 1234578999999999999999876543
No 124
>PRK06620 hypothetical protein; Validated
Probab=97.87 E-value=6.9e-05 Score=75.08 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=77.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLS 254 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (892)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. . + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~----------------------~-~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF----------------------N-E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------------------c-h-------hHH-
Confidence 558999999999999999988775 11 1111 0000 0 0 011
Q ss_pred cCcEEEEEeccccccc--ccccccccCCCCCCCcEEEEEecchhh-------cccccccceEEccCCChHHHHHHHHHHh
Q 002691 255 KKKFVLLLDDLWERVD--LTKVGVPVPNSRNVASKVVFTTRLLDV-------CGLMEAHKKFKVECLSDEDAWQLFREKV 325 (892)
Q Consensus 255 ~kr~LlVlDdv~~~~~--~~~~~~~l~~~~~~gs~IiiTTR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 325 (892)
+..-++++||+....+ +..+...+. ..|..||+|++.+.. ...+...-++++++++.++-..++.+.+
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~---e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIIN---EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHH---hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 1235788999953211 112212222 346789998875432 1222334478999999999888888776
Q ss_pred CCcccCCCCChHHHHHHHHHHhCCchhHH
Q 002691 326 GEETLNYHHDIPELAQMVAKECGGLPLAL 354 (892)
Q Consensus 326 ~~~~~~~~~~~~~~~~~i~~~c~glPLai 354 (892)
....... -+++..-|++.+.|---.+
T Consensus 161 ~~~~l~l---~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 161 SISSVTI---SRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHcCCCC---CHHHHHHHHHHccCCHHHH
Confidence 5322111 2466666777776654433
No 125
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.87 E-value=9.5e-07 Score=97.61 Aligned_cols=179 Identities=19% Similarity=0.195 Sum_probs=88.5
Q ss_pred cccCccceEEEEcccccccccccccCCCCcccEEEecCC--ccccccchhhc------CCCCCcEEEecCccccccChhh
Q 002691 510 TISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNN--KLEVISSRFFH------YMPSLKVLKLSHIQLTELPSRI 581 (892)
Q Consensus 510 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~------~l~~L~~L~L~~~~l~~lp~~i 581 (892)
++..++.+|+|-+.++.+........--..|+.|...+. .+..+.....+ ....|.+.+.++|.+..+-.++
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SL 183 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESL 183 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHH
Confidence 455667889998888876543221111122333333222 11111100000 0123555566666666666666
Q ss_pred cCcCcCCEEeccCCCccccchhhhcCCCCCEEecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchh
Q 002691 582 SKLVSLQHLDLSHTRIKELPGELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARD 661 (892)
Q Consensus 582 ~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 661 (892)
.-++.|+.|||++|++...- .+..|++|+||||++|. +..+|.-....+ .|+.|.+.+ | .
T Consensus 184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrn------N-----------~ 243 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRN------N-----------A 243 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecc------c-----------H
Confidence 66666777777777666554 56666777777776663 555554211222 266665542 1 1
Q ss_pred hhHHHHhcCCCCCcEEEEEecchhhHHHhhccchhhccceeeEecCCC
Q 002691 662 ELLVEELLGLKNLEVLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLK 709 (892)
Q Consensus 662 ~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 709 (892)
...+..+.+|++|+.|+++.|-......+.... ....|+.|+|.|++
T Consensus 244 l~tL~gie~LksL~~LDlsyNll~~hseL~pLw-sLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 244 LTTLRGIENLKSLYGLDLSYNLLSEHSELEPLW-SLSSLIVLWLEGNP 290 (1096)
T ss_pred HHhhhhHHhhhhhhccchhHhhhhcchhhhHHH-HHHHHHHHhhcCCc
Confidence 123445555666666666655443333222111 12245556665543
No 126
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=2.7e-06 Score=84.45 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=8.5
Q ss_pred CCCCcCEEEEecCCCCC
Q 002691 748 VFNSLQKVQISLCSKLK 764 (892)
Q Consensus 748 ~l~~L~~L~L~~c~~l~ 764 (892)
.|+.|..|.+.+.|-+.
T Consensus 247 ~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCchhheeeccCCcccc
Confidence 35555555555554333
No 127
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00025 Score=82.17 Aligned_cols=181 Identities=12% Similarity=0.124 Sum_probs=99.4
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
++|.+..++.+...+. ...+-++|+.|+||||+|+.++...........+ .++ ...... .+..
T Consensus 20 IiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~-------~pC---~~C~~~---~~~~ 86 (725)
T PRK07133 20 IVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL-------EPC---QECIEN---VNNS 86 (725)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC-------Cch---hHHHHh---hcCC
Confidence 7999999999998887 4567899999999999999998775211000000 000 000000 0000
Q ss_pred CCcc-----cCCChHHHHHHHHHHh-----ccCcEEEEEeccccc--ccccccccccCCCCCCCcEEE-EEecchhhccc
Q 002691 234 DGLW-----KNRSREEKALDIFKVL-----SKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVV-FTTRLLDVCGL 300 (892)
Q Consensus 234 ~~~~-----~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Ii-iTTR~~~v~~~ 300 (892)
.+.. .....++ .+.+.+.+ .+++-++|+|++... ..+..+...+-.. .....+| +||+...+...
T Consensus 87 ~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-P~~tifILaTte~~KLl~T 164 (725)
T PRK07133 87 LDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-PKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-CCceEEEEEcCChhhhhHH
Confidence 0000 0011111 22232322 356679999999642 2333443333222 2344444 45554444322
Q ss_pred -ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 301 -MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 301 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
......+++.+++.++....+...+...... -..+.+..|++.++|.+--+..
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~---id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENIS---YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2334588999999999988887765432211 1235577899999997654433
No 128
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.00012 Score=82.03 Aligned_cols=158 Identities=19% Similarity=0.155 Sum_probs=94.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCC-cEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGF-DFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
.-+.|+|.+|+|||+|++++++... ..+. ..++|++. .++..++...+.. ... ..+.+.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~-------~~~----~~f~~~~ 191 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKE-------GKL----NEFREKY 191 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhc-------ccH----HHHHHHH
Confidence 4699999999999999999999872 2222 35667654 3445555554421 111 2233444
Q ss_pred ccCcEEEEEecccccc---cc-cccccccCCCCCCCcEEEEEec-chhh--------cccccccceEEccCCChHHHHHH
Q 002691 254 SKKKFVLLLDDLWERV---DL-TKVGVPVPNSRNVASKVVFTTR-LLDV--------CGLMEAHKKFKVECLSDEDAWQL 320 (892)
Q Consensus 254 ~~kr~LlVlDdv~~~~---~~-~~~~~~l~~~~~~gs~IiiTTR-~~~v--------~~~~~~~~~~~l~~L~~~ea~~L 320 (892)
+.+.-+||+||+.... .+ ..+...+..-...|..||+||. .+.- ...+...-.+.+++.+.+.-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 4456689999996321 11 1222221111123457888875 3221 12233345778999999999999
Q ss_pred HHHHhCCcccCCCCChHHHHHHHHHHhCCchhHH
Q 002691 321 FREKVGEETLNYHHDIPELAQMVAKECGGLPLAL 354 (892)
Q Consensus 321 f~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 354 (892)
+++.+....... -+++..-|++.+.|.--.+
T Consensus 272 L~~~~~~~~~~l---~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 272 ARKMLEIEHGEL---PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHhcCCCC---CHHHHHHHHhccccCHHHH
Confidence 998876433222 2567778888887754444
No 129
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00033 Score=78.53 Aligned_cols=172 Identities=15% Similarity=0.217 Sum_probs=98.5
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCC--------------------CCCcEEEEEEe
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRP--------------------YGFDFVIWVVV 213 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~~wv~v 213 (892)
++|.+..++.+.+.+. ...+.++|+.|+||||+|+.+++...... .+++ .+++..
T Consensus 19 iiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i~g 97 (451)
T PRK06305 19 ILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEIDG 97 (451)
T ss_pred hcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEeec
Confidence 8999999999988887 45678999999999999999988752110 0111 111111
Q ss_pred CCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEE
Q 002691 214 SKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFT 291 (892)
Q Consensus 214 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiT 291 (892)
.....++++. ++.+.+. .....+.+-++|+|+++.. .....+...+.+. ..+..+|++
T Consensus 98 ~~~~gid~ir-~i~~~l~------------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep-~~~~~~Il~ 157 (451)
T PRK06305 98 ASHRGIEDIR-QINETVL------------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP-PQHVKFFLA 157 (451)
T ss_pred cccCCHHHHH-HHHHHHH------------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC-CCCceEEEE
Confidence 1111111111 1111110 0012356778999998643 2233333333332 345566665
Q ss_pred ec-chhhccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhH
Q 002691 292 TR-LLDVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLA 353 (892)
Q Consensus 292 TR-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 353 (892)
|. ...+... ......+++.++++++....+...+...... -..+.+..|++.++|.+--
T Consensus 158 t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~---i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 158 TTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE---TSREALLPIARAAQGSLRD 218 (451)
T ss_pred eCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 53 3333222 2234578999999999988887765432211 2246678899999996643
No 130
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.00078 Score=71.96 Aligned_cols=198 Identities=17% Similarity=0.183 Sum_probs=117.3
Q ss_pred ccchHHHHHHHHHhhc-------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhc
Q 002691 158 VVGLQSILEQVWSCLT-------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKI 230 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (892)
.+||+.+++.+.+++. .+-+-|.|.+|.|||.+...++.+...-... ..++++....--....++..|...+
T Consensus 152 l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~~~~ 230 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIFSSL 230 (529)
T ss_pred ccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHHHHH
Confidence 7999999999999988 6789999999999999999999987221111 2446666554445667777777666
Q ss_pred CCCCCcccCCChHHHHHHHHHHhccC--cEEEEEecccccc-----cccccccccCCCCCCCcEEEEEecch--hh----
Q 002691 231 GLFDGLWKNRSREEKALDIFKVLSKK--KFVLLLDDLWERV-----DLTKVGVPVPNSRNVASKVVFTTRLL--DV---- 297 (892)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~-----~~~~~~~~l~~~~~~gs~IiiTTR~~--~v---- 297 (892)
-.... ......+....+.+...+. -+|+|||..+.-. .+..+ ..++. -+++|+|+.---. +.
T Consensus 231 ~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~l-Fewp~--lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 231 LQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTL-FEWPK--LPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeee-hhccc--CCcceeeeeeehhhhhHHHHH
Confidence 21110 1222245556666666553 5899999997421 11111 12222 2456665432100 00
Q ss_pred c---c--cccccceEEccCCChHHHHHHHHHHhCCcccC--CCCChHHHHHHHHHHhCCchhHHHHHHHHH
Q 002691 298 C---G--LMEAHKKFKVECLSDEDAWQLFREKVGEETLN--YHHDIPELAQMVAKECGGLPLALITIGRAM 361 (892)
Q Consensus 298 ~---~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~--~~~~~~~~~~~i~~~c~glPLai~~~g~~l 361 (892)
. . ..-....+..+|-+.++..++|..+....... .+..++-.|++++...|-+--|+.+.-+.+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 0 0 11123467889999999999999987544311 112233344444444455555555544333
No 131
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00036 Score=81.23 Aligned_cols=189 Identities=14% Similarity=0.132 Sum_probs=105.5
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
+||.+..++.+..++. ...+.++|..|+||||+|+.+++... -..... ....++.-...+.|.......
T Consensus 18 iiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 18 LVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred hcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCCCe
Confidence 8999999999988887 34567999999999999999988762 111000 001111222233333221110
Q ss_pred CCcc---cCCChHHHHHHHHHHh-----ccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEecc-hhhccc-c
Q 002691 234 DGLW---KNRSREEKALDIFKVL-----SKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTRL-LDVCGL-M 301 (892)
Q Consensus 234 ~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR~-~~v~~~-~ 301 (892)
.-.. .....++ .+.+.+.+ .+++-++|+|++..- .....+...+... ...+.+|++|.+ ..+... .
T Consensus 91 ~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep-p~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 91 VIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP-PPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred EEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC-CCCeEEEEEeCChhhhhHHHH
Confidence 0000 0111122 12222222 245678999999643 2344444333332 345566665543 333221 1
Q ss_pred cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002691 302 EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIG 358 (892)
Q Consensus 302 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 358 (892)
.....+.+..++.++....+...+....... ..+....|++.++|.+..+...-
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2235788999999999888887765433211 24667889999999886555443
No 132
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00039 Score=78.42 Aligned_cols=173 Identities=12% Similarity=0.128 Sum_probs=99.6
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCC--CC----------------CCcEEEEEEeCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNR--PY----------------GFDFVIWVVVSK 215 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~----------------~f~~~~wv~vs~ 215 (892)
++|-+..++.+.+.+. ...+.++|+.|+||||+|+.++...... .. .+..++++..+.
T Consensus 18 iiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas 97 (486)
T PRK14953 18 VIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS 97 (486)
T ss_pred ccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc
Confidence 7999999999988887 4556789999999999999998875210 00 011111221111
Q ss_pred ccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh-----ccCcEEEEEeccccc--ccccccccccCCCCCCCcEE
Q 002691 216 DLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL-----SKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKV 288 (892)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~I 288 (892)
+..+ + ..+.+.+.. .+++-++|+|++... .....+...+... .....+
T Consensus 98 ~~gv-----------------------d-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-p~~~v~ 152 (486)
T PRK14953 98 NRGI-----------------------D-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-PPRTIF 152 (486)
T ss_pred CCCH-----------------------H-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-CCCeEE
Confidence 1111 1 111222222 356679999999643 2233333333332 334455
Q ss_pred EEEe-cchhhccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002691 289 VFTT-RLLDVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIG 358 (892)
Q Consensus 289 iiTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 358 (892)
|++| +...+... ......+.+.+++.++....+.+.+...... -..+....|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~---id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE---YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544 43333221 2234578999999999888888765433211 124566778889999776554443
No 133
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00037 Score=80.91 Aligned_cols=175 Identities=13% Similarity=0.175 Sum_probs=103.9
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccC--------------------CCCCCcEEEEEEe
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLN--------------------RPYGFDFVIWVVV 213 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~f~~~~wv~v 213 (892)
++|.+..++.+...+. ...+.++|+.|+||||+|+.++..... ...+|+. ..+..
T Consensus 19 viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ld~ 97 (614)
T PRK14971 19 VVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HELDA 97 (614)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEecc
Confidence 8999999999999987 456889999999999999988876521 0112332 22222
Q ss_pred CCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEE-
Q 002691 214 SKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVF- 290 (892)
Q Consensus 214 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iii- 290 (892)
+....++++.. ++.++... -..+++-++|+|++..- ..+..+...+..- ..++.+|+
T Consensus 98 ~~~~~vd~Ir~-li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-p~~tifIL~ 157 (614)
T PRK14971 98 ASNNSVDDIRN-LIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-PSYAIFILA 157 (614)
T ss_pred cccCCHHHHHH-HHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCC-CCCeEEEEE
Confidence 22222222221 11111100 01235568899998653 2344444444333 34556555
Q ss_pred Eecchhhccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 291 TTRLLDVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 291 TTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
||+...+... ......+++.+++.++....+.+.+...... -..+.+..|++.++|-.--+..
T Consensus 158 tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~---i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 158 TTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT---AEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred eCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 4454444332 2335678999999999998888766543322 1235678899999997654433
No 134
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.82 E-value=3.5e-06 Score=74.06 Aligned_cols=111 Identities=16% Similarity=0.332 Sum_probs=86.1
Q ss_pred ceEEEEccccccccccc---ccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCEEec
Q 002691 516 KIRRLSLMENHIEDLSN---IYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDL 592 (892)
Q Consensus 516 ~l~~L~l~~~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 592 (892)
.+..++++.+.+-.+++ .+....+|...++++|.++++|+.+-.+++.+..|++++|.++.+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34445666665544433 235566788888999988888888777778888999999999999988888999999999
Q ss_pred cCCCccccchhhhcCCCCCEEecCCCcCccccchh
Q 002691 593 SHTRIKELPGELEILVNLKCLNLNHTMYLSVIPRQ 627 (892)
Q Consensus 593 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~ 627 (892)
+.|.+...|..+..|.+|-.|+..++. ...+|..
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 999888888888888888888887774 4566654
No 135
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.81 E-value=0.00026 Score=77.63 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=92.8
Q ss_pred ccchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHH
Q 002691 158 VVGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEK 221 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (892)
+.|.+..++++.+.+. .+-+.++|++|+|||++|+++++.. ...| +.+.. ..
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~----s~ 214 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG----SE 214 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----HH
Confidence 6799988888887664 3578999999999999999999986 2333 22211 11
Q ss_pred HHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccccc------------c----ccccccccCC-CCCC
Q 002691 222 IQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV------------D----LTKVGVPVPN-SRNV 284 (892)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~~~~~l~~-~~~~ 284 (892)
+ .... ...........+.......+.+|++|+++... . +..+...+.. ....
T Consensus 215 l----~~k~-------~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 215 F----VQKY-------LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred H----HHHh-------cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 1 1111 01111122222223334578999999986320 0 1111111111 0023
Q ss_pred CcEEEEEecchhhccc--c---cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCc
Q 002691 285 ASKVVFTTRLLDVCGL--M---EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGL 350 (892)
Q Consensus 285 gs~IiiTTR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 350 (892)
+..||.||...+.... . .....+.++..+.++..++|+..........+.++. .+++.+.|.
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~----~la~~t~g~ 350 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLE----DFVSRPEKI 350 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHH----HHHHHcCCC
Confidence 5678888875543211 1 234568899999999888888765443322223333 445555554
No 136
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.00058 Score=68.25 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=94.3
Q ss_pred ccchHHHHHHHHHhhc--------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHh
Q 002691 158 VVGLQSILEQVWSCLT--------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKK 229 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~--------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (892)
|||.++.++++.=.+. .-.+.++|++|.||||||.-+++.. .+ .+.. +......-..-+..|+..
T Consensus 28 fiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~k~----tsGp~leK~gDlaaiLt~ 100 (332)
T COG2255 28 FIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NLKI----TSGPALEKPGDLAAILTN 100 (332)
T ss_pred hcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--CeEe----cccccccChhhHHHHHhc
Confidence 8999999888877776 6689999999999999999999997 22 2211 111000001111122222
Q ss_pred cCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccc---------ccccccccccCCCCCCCcEE-----------E
Q 002691 230 IGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER---------VDLTKVGVPVPNSRNVASKV-----------V 289 (892)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~~~l~~~~~~gs~I-----------i 289 (892)
+ + ..=++.+|.+-.. ...+++..-..-+.++++|. =
T Consensus 101 L-----------------------e-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 101 L-----------------------E-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred C-----------------------C-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 2 1 1223444554310 01111111111111333333 3
Q ss_pred EEecchhhcccccc--cceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 290 FTTRLLDVCGLMEA--HKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 290 iTTR~~~v~~~~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
.|||.-.+..-+.. .-+.+++.-+.+|-.+...+.|..-.... .++.+.+|+++..|-|--..-+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcHHHHHH
Confidence 48886544332221 23568899999999999998875433222 2467899999999999644433
No 137
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00035 Score=80.65 Aligned_cols=189 Identities=13% Similarity=0.128 Sum_probs=100.9
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEE-eCCccCHHHHHHHHHHhcCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVV-VSKDLQLEKIQETIGKKIGL 232 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~~l~~ 232 (892)
+||-+..++.+.+.+. ...+.++|+.|+||||+|+.+++.... ....+.-.|-. +...++.-...+.+...-..
T Consensus 18 ivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c-~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~ 96 (620)
T PRK14954 18 ITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDPVYLQEVTEPCGECESCRDFDAGTSL 96 (620)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC-CCcCCccccccccCCCCccCHHHHHHhccCCC
Confidence 8999999998888886 455889999999999999999887621 11111001110 00111111111111111100
Q ss_pred CCCcc---cCCChHHHHHHHHHHh-----ccCcEEEEEecccccc--cccccccccCCCCCCCcEEEEEe-cchhhccc-
Q 002691 233 FDGLW---KNRSREEKALDIFKVL-----SKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVVFTT-RLLDVCGL- 300 (892)
Q Consensus 233 ~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IiiTT-R~~~v~~~- 300 (892)
.-..+ .....++.. .+.+.+ .+.+-++|+|+++... ....+...+..- ...+.+|++| +...+...
T Consensus 97 n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP-p~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 97 NISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP-PPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC-CCCeEEEEEeCChhhhhHHH
Confidence 00000 011122222 222222 3456689999986532 234444444332 3345555444 43444322
Q ss_pred ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchh
Q 002691 301 MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPL 352 (892)
Q Consensus 301 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 352 (892)
......+++.+++.++....+.+.+...... -..+.+..|++.++|..-
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~---I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ---IDADALQLIARKAQGSMR 223 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHH
Confidence 2335678999999999888887765432211 124667889999999554
No 138
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.0005 Score=77.51 Aligned_cols=177 Identities=14% Similarity=0.194 Sum_probs=102.3
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCC-CC----------------C-cEEEEEEeCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRP-YG----------------F-DFVIWVVVSK 215 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~----------------f-~~~~wv~vs~ 215 (892)
+||-+...+.+...+. ..++-++|+.|+||||+|+.+++...... .. + ..++.+..+.
T Consensus 16 iiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas 95 (535)
T PRK08451 16 LIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS 95 (535)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc
Confidence 8999998888888887 45668999999999999998887752110 00 0 0111221111
Q ss_pred ccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEec
Q 002691 216 DLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTR 293 (892)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR 293 (892)
...++.+...+ ..... .-..+++-++|+|++... .....+...+... ...+++|++|.
T Consensus 96 ~~gId~IReli-e~~~~------------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-p~~t~FIL~tt 155 (535)
T PRK08451 96 NRGIDDIRELI-EQTKY------------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-PSYVKFILATT 155 (535)
T ss_pred ccCHHHHHHHH-HHHhh------------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-CCceEEEEEEC
Confidence 11122221111 11000 001245668999999643 2233343333332 34566676665
Q ss_pred ch-hhcc-cccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 294 LL-DVCG-LMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 294 ~~-~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
+. .+.. .......+++.+++.++....+.+.+...... -..+....|++.++|.+.-+..+
T Consensus 156 d~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~---i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 156 DPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS---YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHH
Confidence 53 2221 12234578999999999988887766443321 12467788999999988655444
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.78 E-value=0.00022 Score=79.67 Aligned_cols=159 Identities=19% Similarity=0.170 Sum_probs=91.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLS 254 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (892)
..+.|+|..|+|||+|++++++... ....-..+++++. .++...+...+.. ... ..+.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~----~~~~~~~~ 198 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRN-------NKM----EEFKEKYR 198 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHc-------CCH----HHHHHHHH
Confidence 4689999999999999999999872 2211234566643 3334444444321 111 22333343
Q ss_pred cCcEEEEEeccccccc---c-cccccccCCCCCCCcEEEEEecch-h--------hcccccccceEEccCCChHHHHHHH
Q 002691 255 KKKFVLLLDDLWERVD---L-TKVGVPVPNSRNVASKVVFTTRLL-D--------VCGLMEAHKKFKVECLSDEDAWQLF 321 (892)
Q Consensus 255 ~kr~LlVlDdv~~~~~---~-~~~~~~l~~~~~~gs~IiiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf 321 (892)
+ .-+||+||+..... + +.+...+..-...|..||+||... . +...+.....+.+++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 3 34888999964211 1 112211111102355688877642 1 1222333346899999999999999
Q ss_pred HHHhCCcccCCCCChHHHHHHHHHHhCCchhHHH
Q 002691 322 REKVGEETLNYHHDIPELAQMVAKECGGLPLALI 355 (892)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (892)
.+.+....... -+++...|++.+.|.+-.+.
T Consensus 278 ~~~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGLEL---PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHH
Confidence 98876543222 25667778888887665433
No 140
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=3.8e-05 Score=54.76 Aligned_cols=41 Identities=44% Similarity=0.598 Sum_probs=34.9
Q ss_pred CcCCEEeccCCCccccchhhhcCCCCCEEecCCCcCccccch
Q 002691 585 VSLQHLDLSHTRIKELPGELEILVNLKCLNLNHTMYLSVIPR 626 (892)
Q Consensus 585 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p~ 626 (892)
++|++|++++|+|+.+|..+++|++|+.|++++|+ +..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 47999999999999999889999999999999996 566654
No 141
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=7.9e-05 Score=80.08 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=84.9
Q ss_pred HHHHhcCCCCCcEEEEEecchhhHHHhhccchhhccceeeEecCCCCCcccccccccccCCCCEEeEecCCCccceeecc
Q 002691 664 LVEELLGLKNLEVLEFTLTSSHVLQMFLTSNELRRCSQALFLDGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDL 743 (892)
Q Consensus 664 ~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 743 (892)
....+..+.+++.|+++.+....++ .+..+|+.|.+.+|..++.++. .+ +.+|++|.+++|..+..+
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sL---- 110 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIESLP------VLPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGL---- 110 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCcccC------CCCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCccccccc----
Confidence 3445666788888888876554444 2344688888888877655542 23 357888888888665533
Q ss_pred ccccCCCCcCEEEEecCCCCCCCcccccCCCccEEEEecCcchhhhhccCcccCCcccccCCCCcc-CcccEeecCcccc
Q 002691 744 RQSCVFNSLQKVQISLCSKLKDLTFLVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNPF-AKLQHLELVCLRN 822 (892)
Q Consensus 744 ~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~ 822 (892)
+++|+.|++.++ .+..++.+ .++|+.|.+.++...... .....+ ++|++|.+.+|..
T Consensus 111 -----P~sLe~L~L~~n-~~~~L~~L--PssLk~L~I~~~n~~~~~--------------~lp~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 111 -----PESVRSLEIKGS-ATDSIKNV--PNGLTSLSINSYNPENQA--------------RIDNLISPSLKTLSLTGCSN 168 (426)
T ss_pred -----ccccceEEeCCC-CCcccccC--cchHhheecccccccccc--------------ccccccCCcccEEEecCCCc
Confidence 356777777542 32222211 146777777543211100 000123 5799999999886
Q ss_pred cccccCCCCCCCCccEEeeccc
Q 002691 823 LNSIYWKPLPFSQLKEMLVDDC 844 (892)
Q Consensus 823 L~~i~~~~~~~~~L~~L~i~~C 844 (892)
+. +|.. -.++|+.|.+..+
T Consensus 169 i~-LP~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 169 II-LPEK--LPESLQSITLHIE 187 (426)
T ss_pred cc-Cccc--ccccCcEEEeccc
Confidence 53 2221 2268999998775
No 142
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.76 E-value=0.00036 Score=84.36 Aligned_cols=172 Identities=13% Similarity=0.075 Sum_probs=92.7
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCC----CcEEE-EEEeCCccCHHHHHHHHHHh
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYG----FDFVI-WVVVSKDLQLEKIQETIGKK 229 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~-wv~vs~~~~~~~~~~~i~~~ 229 (892)
+|||+.++.+++..|. ..-+.++|.+|+||||+|..++++... ... ....+ .+.++.- ..
T Consensus 189 ~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~-~~v~~~l~~~~i~~l~l~~l----------~a- 256 (852)
T TIGR03345 189 VLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA-GDVPPALRNVRLLSLDLGLL----------QA- 256 (852)
T ss_pred ccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh-CCCCccccCCeEEEeehhhh----------hc-
Confidence 8999999999999888 456679999999999999999988621 111 11222 2222210 00
Q ss_pred cCCCCCcccCCChHHHHHHHHHHhc--cCcEEEEEecccccc------cccc----cccccCCCCCCCcEEEEEecchhh
Q 002691 230 IGLFDGLWKNRSREEKALDIFKVLS--KKKFVLLLDDLWERV------DLTK----VGVPVPNSRNVASKVVFTTRLLDV 297 (892)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~----~~~~l~~~~~~gs~IiiTTR~~~v 297 (892)
... .....+.....+.+.++ +++.+|++|++..-. .-.+ +...+..+ .-++|-||..++.
T Consensus 257 --g~~---~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G---~l~~IgaTT~~e~ 328 (852)
T TIGR03345 257 --GAS---VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG---ELRTIAATTWAEY 328 (852)
T ss_pred --ccc---cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC---CeEEEEecCHHHH
Confidence 000 11112222333333332 468999999985321 1111 22222221 3455555554322
Q ss_pred ccc-------ccccceEEccCCChHHHHHHHHHHhCCccc-CCCCChHHHHHHHHHHhCC
Q 002691 298 CGL-------MEAHKKFKVECLSDEDAWQLFREKVGEETL-NYHHDIPELAQMVAKECGG 349 (892)
Q Consensus 298 ~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~~i~~~c~g 349 (892)
... ......+.+++++.+++.++++.....-.. ..-.-..+....+++.+.+
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 111 122357899999999999997554321110 0001123445566666654
No 143
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=2.1e-05 Score=78.35 Aligned_cols=83 Identities=22% Similarity=0.245 Sum_probs=39.4
Q ss_pred CCCcccEEEecCCccccccc--hhhcCCCCCcEEEecCccccccChhh-cCcCcCCEEeccCCCcc--ccchhhhcCCCC
Q 002691 536 RCPHLVTLFLNNNKLEVISS--RFFHYMPSLKVLKLSHIQLTELPSRI-SKLVSLQHLDLSHTRIK--ELPGELEILVNL 610 (892)
Q Consensus 536 ~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~l~~~~i~--~lp~~i~~l~~L 610 (892)
.+.+++.+++.+|.+++... ..+.+|++|++|+|+.|++..--.++ -.+.+|++|-|.++.+. ..-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34555666666664443321 23455666666666655443211111 23445555555555332 333444445555
Q ss_pred CEEecCCC
Q 002691 611 KCLNLNHT 618 (892)
Q Consensus 611 ~~L~l~~~ 618 (892)
+.|+++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55555444
No 144
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.00024 Score=79.29 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=86.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLS 254 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (892)
..+.|+|+.|+|||+|++++++.... ....+++++. ..+...+...+... . ...+++.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~~------~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVRS------ELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEeeH------HHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 46899999999999999999998721 1234455542 33444444444211 1 123444443
Q ss_pred cCcEEEEEeccccccc----ccccccccCCCCCCCcEEEEEecch-h--------hcccccccceEEccCCChHHHHHHH
Q 002691 255 KKKFVLLLDDLWERVD----LTKVGVPVPNSRNVASKVVFTTRLL-D--------VCGLMEAHKKFKVECLSDEDAWQLF 321 (892)
Q Consensus 255 ~kr~LlVlDdv~~~~~----~~~~~~~l~~~~~~gs~IiiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf 321 (892)
..-+|++||+..... .+.+...+..-...|..||+||... . +...+.....+.+.+++.++-..++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 344888899854211 1222222111002356788887542 1 1222333457899999999999999
Q ss_pred HHHhCCcccCCCCChHHHHHHHHHHhCCc
Q 002691 322 REKVGEETLNYHHDIPELAQMVAKECGGL 350 (892)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 350 (892)
.+++.......+ +++..-|+..+.|.
T Consensus 281 ~~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 988754332222 34555566665543
No 145
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.74 E-value=0.00019 Score=81.17 Aligned_cols=159 Identities=19% Similarity=0.162 Sum_probs=93.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLS 254 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (892)
..+.|+|.+|+|||+|++++++... ....-..+++++.. ++...+...+.. ... ..+.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~----~~~~~~~~ 210 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFVNALRN-------NTM----EEFKEKYR 210 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHHHHHHc-------CcH----HHHHHHHh
Confidence 5689999999999999999999872 21112345566443 233333333321 111 23334444
Q ss_pred cCcEEEEEecccccc----cccccccccCCCCCCCcEEEEEecchh---------hcccccccceEEccCCChHHHHHHH
Q 002691 255 KKKFVLLLDDLWERV----DLTKVGVPVPNSRNVASKVVFTTRLLD---------VCGLMEAHKKFKVECLSDEDAWQLF 321 (892)
Q Consensus 255 ~kr~LlVlDdv~~~~----~~~~~~~~l~~~~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf 321 (892)
+.-+||+||+.... ..+.+...+......|..||+||.... +...+.....+++++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 34489999996421 112222211111123556888776432 1223333457899999999999999
Q ss_pred HHHhCCcccCCCCChHHHHHHHHHHhCCchhHHH
Q 002691 322 REKVGEETLNYHHDIPELAQMVAKECGGLPLALI 355 (892)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (892)
++.+...... --+++..-|++.+.|..-.+.
T Consensus 290 ~~~~~~~~~~---l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 290 KKKAEEEGID---LPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHcCCC---CCHHHHHHHHcCcCCCHHHHH
Confidence 9987643212 224677888888888766443
No 146
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.72 E-value=0.00097 Score=68.56 Aligned_cols=190 Identities=14% Similarity=0.075 Sum_probs=113.6
Q ss_pred HHHHHHHhhc------ccEEEEEcCCCCcHHHHHHHHHhhccCCCC---CCcEEEEEEeCCccCHHHHHHHHHHhcCCCC
Q 002691 164 ILEQVWSCLT------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPY---GFDFVIWVVVSKDLQLEKIQETIGKKIGLFD 234 (892)
Q Consensus 164 ~~~~l~~~l~------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 234 (892)
.++++.+++. ..-+.|||.+|.|||++++.+...+....+ .--.++.|.....++...++..|+.+++.+.
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 3455555555 457999999999999999999987622111 1125778888899999999999999999875
Q ss_pred CcccCCChHHHHHHHHHHhcc-CcEEEEEeccccc-----cccccc---ccccCCCCCCCcEEEEEecchhhcccc----
Q 002691 235 GLWKNRSREEKALDIFKVLSK-KKFVLLLDDLWER-----VDLTKV---GVPVPNSRNVASKVVFTTRLLDVCGLM---- 301 (892)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~-----~~~~~~---~~~l~~~~~~gs~IiiTTR~~~v~~~~---- 301 (892)
. ...+...........++. +--+||+|++-+. .....+ ...+.+. -.-+-|.+-|+...-+-..
T Consensus 125 ~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne-L~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 125 R--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE-LQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred C--CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc-cCCCeEEeccHHHHHHhccCHHH
Confidence 4 234445555555566655 4458999999542 111111 1222222 2345566666643222111
Q ss_pred -cccceEEccCCChH-HHHHHHHHHhC--CcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 302 -EAHKKFKVECLSDE-DAWQLFREKVG--EETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 302 -~~~~~~~l~~L~~~-ea~~Lf~~~a~--~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
+...++.++.-..+ |...|+..-.. .-.....-...+++..|...++|+.=-+..
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 11235566655543 44455433221 111122334578999999999998754433
No 147
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.0008 Score=78.18 Aligned_cols=190 Identities=16% Similarity=0.107 Sum_probs=103.1
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
++|.+..++.+..++. ...+-++|..|+||||+|+.+++.... . ..+.. ....++.-...+.+.......
T Consensus 18 liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c-~-~~~~~----~~~~Cg~C~~C~~i~~g~h~D 91 (620)
T PRK14948 18 LVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC-L-NSDKP----TPEPCGKCELCRAIAAGNALD 91 (620)
T ss_pred ccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC-C-CcCCC----CCCCCcccHHHHHHhcCCCcc
Confidence 7999999999888887 356789999999999999999988621 1 11000 001111122222222221110
Q ss_pred C---CcccCCChHHHHHHHHHHh-----ccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEecc-hhhccc-c
Q 002691 234 D---GLWKNRSREEKALDIFKVL-----SKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTRL-LDVCGL-M 301 (892)
Q Consensus 234 ~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR~-~~v~~~-~ 301 (892)
. +.......++. +.+.+.. .+++-++|+|++... ..+..+...+..- .....+|++|.+ ..+... .
T Consensus 92 ~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-p~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 92 VIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-PPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred EEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-CcCeEEEEEeCChhhhhHHHH
Confidence 0 00001111111 1222222 245668999999743 2344444444332 234555554443 333221 2
Q ss_pred cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002691 302 EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIG 358 (892)
Q Consensus 302 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 358 (892)
.....+++..++.++....+...+....... ..+....|++.++|.+..+..+-
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2345678889999988887777654332111 13567889999999886555443
No 148
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.70 E-value=0.00067 Score=77.09 Aligned_cols=158 Identities=20% Similarity=0.166 Sum_probs=92.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLS 254 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (892)
..+.|+|..|+|||.|++++++... ....-..++|++. .++..++...+.. .. ...+++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 4689999999999999999999872 1111234566643 3344444433311 11 122333444
Q ss_pred cCcEEEEEeccccc---cccc-ccccccCCCCCCCcEEEEEecch---------hhcccccccceEEccCCChHHHHHHH
Q 002691 255 KKKFVLLLDDLWER---VDLT-KVGVPVPNSRNVASKVVFTTRLL---------DVCGLMEAHKKFKVECLSDEDAWQLF 321 (892)
Q Consensus 255 ~kr~LlVlDdv~~~---~~~~-~~~~~l~~~~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 321 (892)
+ -=+|||||+... ..|. .+...+......|..|||||+.. .+...+...-.+.+++.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 347888999642 1121 22222211113456788888752 12233444567899999999999999
Q ss_pred HHHhCCcccCCCCChHHHHHHHHHHhCCchhHH
Q 002691 322 REKVGEETLNYHHDIPELAQMVAKECGGLPLAL 354 (892)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 354 (892)
.+++.......+ +++..-|++.+.+..-.|
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCHHHH
Confidence 998865442222 466777777776554433
No 149
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.69 E-value=0.00024 Score=73.78 Aligned_cols=162 Identities=20% Similarity=0.171 Sum_probs=102.2
Q ss_pred cccchHHHHHHHHHhhc------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhc
Q 002691 157 LVVGLQSILEQVWSCLT------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKI 230 (892)
Q Consensus 157 ~~vGr~~~~~~l~~~l~------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (892)
.+.+|+..+..+..++. .+.|.|+|-.|.|||.+.+.+.+.. + -..+|+++-+.++.+.++..|+.+.
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n-----~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N-----LENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C-----CcceeeehHHhccHHHHHHHHHHHh
Confidence 37899999999999988 5667999999999999999999987 2 2358999999999999999999998
Q ss_pred CCCC-CcccCCChHHH----HHHHHH--Hhc--cCcEEEEEecccccccccccccc----cCCCCCCCcEEEEEecc--h
Q 002691 231 GLFD-GLWKNRSREEK----ALDIFK--VLS--KKKFVLLLDDLWERVDLTKVGVP----VPNSRNVASKVVFTTRL--L 295 (892)
Q Consensus 231 ~~~~-~~~~~~~~~~~----~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~~~~~----l~~~~~~gs~IiiTTR~--~ 295 (892)
+..+ +........+. ...+.+ ... ++.++||||+++.-.+...+.-+ +..-.....-+|+++-- +
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 6222 11111111122 222222 222 35899999999765544432110 00000111233444332 1
Q ss_pred hh-cccccccc--eEEccCCChHHHHHHHHHH
Q 002691 296 DV-CGLMEAHK--KFKVECLSDEDAWQLFREK 324 (892)
Q Consensus 296 ~v-~~~~~~~~--~~~l~~L~~~ea~~Lf~~~ 324 (892)
.. ...+++.. ++..+.-+.+|..+++.+.
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 11 12234333 4567888899999988664
No 150
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=4.6e-06 Score=93.45 Aligned_cols=81 Identities=35% Similarity=0.441 Sum_probs=36.4
Q ss_pred CCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCEEeccCCCccccchhhhcCCCCCEEe
Q 002691 535 PRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPGELEILVNLKCLN 614 (892)
Q Consensus 535 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 614 (892)
..+++|..|++.+|.+..+... +..+.+|++|++++|.|+.+. .+..+..|+.|++.+|.|..++ .+..+++|+.++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLD 168 (414)
T ss_pred ccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhccc
Confidence 3444444444444444443321 334444555555555444443 2334444555555555444442 233344455555
Q ss_pred cCCC
Q 002691 615 LNHT 618 (892)
Q Consensus 615 l~~~ 618 (892)
+++|
T Consensus 169 l~~n 172 (414)
T KOG0531|consen 169 LSYN 172 (414)
T ss_pred CCcc
Confidence 5444
No 151
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=2.2e-05 Score=91.80 Aligned_cols=104 Identities=21% Similarity=0.320 Sum_probs=62.5
Q ss_pred cceEEEEcccccccc--cc-cccCCCCcccEEEecCCccccc-cchhhcCCCCCcEEEecCccccccChhhcCcCcCCEE
Q 002691 515 VKIRRLSLMENHIED--LS-NIYPRCPHLVTLFLNNNKLEVI-SSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHL 590 (892)
Q Consensus 515 ~~l~~L~l~~~~~~~--l~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 590 (892)
.++++|++++...-. -| ..-..+|.|++|.+.+-.+... ....+.++++|+.||+|+++++.+ ..+++|+||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 467788877643221 11 1113467777777776544221 122345677777777777777776 567777777777
Q ss_pred eccCCCcccc--chhhhcCCCCCEEecCCCc
Q 002691 591 DLSHTRIKEL--PGELEILVNLKCLNLNHTM 619 (892)
Q Consensus 591 ~l~~~~i~~l--p~~i~~l~~L~~L~l~~~~ 619 (892)
.+++-.+..- -..+.+|++|++||+|...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 7766555422 1346667777777777654
No 152
>PF14516 AAA_35: AAA-like domain
Probab=97.66 E-value=0.0033 Score=67.87 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=117.7
Q ss_pred ccchHHHHHHHHHhhc--ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc-----cCHHHHH----HHH
Q 002691 158 VVGLQSILEQVWSCLT--AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD-----LQLEKIQ----ETI 226 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~----~~i 226 (892)
.|+|...-+++.+.+. -..+.|.|+-.+|||+|...+.+.. +. .. ..++++++..- .+....+ ..|
T Consensus 13 Yi~R~~~e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l-~~-~~-~~~v~id~~~~~~~~~~~~~~f~~~~~~~i 89 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERL-QQ-QG-YRCVYIDLQQLGSAIFSDLEQFLRWFCEEI 89 (331)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHH-HH-CC-CEEEEEEeecCCCcccCCHHHHHHHHHHHH
Confidence 5799967777777776 7899999999999999999998887 22 23 44567776542 2445444 445
Q ss_pred HHhcCCCCCc---c--cCCChHHHHHHHHHHh---ccCcEEEEEeccccccc----ccccccccC----------CCCCC
Q 002691 227 GKKIGLFDGL---W--KNRSREEKALDIFKVL---SKKKFVLLLDDLWERVD----LTKVGVPVP----------NSRNV 284 (892)
Q Consensus 227 ~~~l~~~~~~---~--~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~----~~~~~~~l~----------~~~~~ 284 (892)
.++++..... + ...........+.+.+ .+++.+|++|+|+..-. ..++...++ .+ ..
T Consensus 90 ~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~-~~ 168 (331)
T PF14516_consen 90 SRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW-QK 168 (331)
T ss_pred HHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc-ce
Confidence 5555543210 0 0112233334444433 25899999999975321 112211111 11 11
Q ss_pred CcEEEEE-ecchhhcc----cccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHH
Q 002691 285 ASKVVFT-TRLLDVCG----LMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGR 359 (892)
Q Consensus 285 gs~IiiT-TR~~~v~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 359 (892)
=+-|++. |+...... -+.....++|++++.+|...|..+.-..- -....++|...+||+|.-+..++.
T Consensus 169 L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-------~~~~~~~l~~~tgGhP~Lv~~~~~ 241 (331)
T PF14516_consen 169 LRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-------SQEQLEQLMDWTGGHPYLVQKACY 241 (331)
T ss_pred EEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-------CHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1112222 22111111 11234578999999999999998763221 123388899999999999999999
Q ss_pred HHhcC
Q 002691 360 AMAYK 364 (892)
Q Consensus 360 ~l~~~ 364 (892)
.+...
T Consensus 242 ~l~~~ 246 (331)
T PF14516_consen 242 LLVEE 246 (331)
T ss_pred HHHHc
Confidence 88663
No 153
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.63 E-value=0.00044 Score=77.50 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=86.0
Q ss_pred ccchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCC---CCcEEEEEEeCCccC
Q 002691 158 VVGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPY---GFDFVIWVVVSKDLQ 218 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~vs~~~~ 218 (892)
+.|.+..++++.+.+. .+-+.++|++|+|||++|+++++.. .... .+....|+.++..
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL-~~~i~~~~~~~~~fl~v~~~-- 260 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL-AQRIGAETGDKSYFLNIKGP-- 260 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh-ccccccccCCceeEEeccch--
Confidence 6789999988888764 3458999999999999999999987 2110 1223445544431
Q ss_pred HHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh-----ccCcEEEEEecccccc---------cc-----cccccccC
Q 002691 219 LEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL-----SKKKFVLLLDDLWERV---------DL-----TKVGVPVP 279 (892)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~---------~~-----~~~~~~l~ 279 (892)
+ ++... .. ..+.....+.+.. .+++.+|+||+++... +. ..+...+.
T Consensus 261 --e----Ll~ky-------vG-ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 261 --E----LLNKY-------VG-ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred --h----hcccc-------cc-hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 1 11110 00 1111222222222 2478999999997421 11 11211121
Q ss_pred CCC-CCCcEEEEEecchhhcc-c----ccccceEEccCCChHHHHHHHHHHhC
Q 002691 280 NSR-NVASKVVFTTRLLDVCG-L----MEAHKKFKVECLSDEDAWQLFREKVG 326 (892)
Q Consensus 280 ~~~-~~gs~IiiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~a~ 326 (892)
... ..+..||.||...+... . ...+..++++..+.++..++|..+..
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 110 13444555665444321 1 12245689999999999999988764
No 154
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.63 E-value=0.00024 Score=76.76 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=79.3
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
++|.+...+.+..++. ..++.++|++|+||||+|+.+++.. ... ...++.+. .....+...+......
T Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~~- 94 (316)
T PHA02544 23 CILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAST- 94 (316)
T ss_pred hcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHHh-
Confidence 7999999999998887 4677779999999999999999875 211 23344333 1122211111110000
Q ss_pred CCcccCCChHHHHHHHHHHhccCcEEEEEeccccc--ccc-cccccccCCCCCCCcEEEEEecchhh-cc-cccccceEE
Q 002691 234 DGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER--VDL-TKVGVPVPNSRNVASKVVFTTRLLDV-CG-LMEAHKKFK 308 (892)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~-~~~~~~l~~~~~~gs~IiiTTR~~~v-~~-~~~~~~~~~ 308 (892)
..+.+.+-+||+||++.. ... ..+...+... ..+.++|+||....- .. ..+....+.
T Consensus 95 -----------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-~~~~~~Ilt~n~~~~l~~~l~sR~~~i~ 156 (316)
T PHA02544 95 -----------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-SKNCSFIITANNKNGIIEPLRSRCRVID 156 (316)
T ss_pred -----------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhc-CCCceEEEEcCChhhchHHHHhhceEEE
Confidence 001234568999999643 111 1222222222 456788888865331 11 111223567
Q ss_pred ccCCChHHHHHHHHH
Q 002691 309 VECLSDEDAWQLFRE 323 (892)
Q Consensus 309 l~~L~~~ea~~Lf~~ 323 (892)
++..+.++..+++..
T Consensus 157 ~~~p~~~~~~~il~~ 171 (316)
T PHA02544 157 FGVPTKEEQIEMMKQ 171 (316)
T ss_pred eCCCCHHHHHHHHHH
Confidence 777777777666543
No 155
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.0013 Score=75.65 Aligned_cols=187 Identities=16% Similarity=0.111 Sum_probs=102.5
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
++|-+..++.+...+. ...+.++|+.|+||||+|+.+++.... ...... ..+....+ -+.|...-...
T Consensus 18 iiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c-~~~~~~---~pC~~C~~----C~~i~~~~~~d 89 (563)
T PRK06647 18 LEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC-VNGPTP---MPCGECSS----CKSIDNDNSLD 89 (563)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc-ccCCCC---CCCccchH----HHHHHcCCCCC
Confidence 8999999999999887 556889999999999999999887621 110000 00000000 01111100000
Q ss_pred C---CcccCCChHHHHHHHHHH-----hccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEecc-hhhccc-c
Q 002691 234 D---GLWKNRSREEKALDIFKV-----LSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTRL-LDVCGL-M 301 (892)
Q Consensus 234 ~---~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR~-~~v~~~-~ 301 (892)
- +.......++.. .+.+. ..+++-++|+|++..- ..+..+...+... .....+|++|.. ..+... .
T Consensus 90 v~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-p~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 90 VIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-PPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred eEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccC-CCCEEEEEecCChHHhHHHHH
Confidence 0 000011122221 12211 2356668999998643 2344444444332 345556555543 333221 2
Q ss_pred cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 302 EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 302 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
.....+++.+++.++....+.+.+...... -..+....|++.++|.+-.+...
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~egi~---id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQIK---YEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 224568999999999988888766433211 22466777999999988655443
No 156
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0022 Score=72.35 Aligned_cols=153 Identities=21% Similarity=0.272 Sum_probs=88.0
Q ss_pred ccchHHHHHHHHHhhc---------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHH
Q 002691 158 VVGLQSILEQVWSCLT---------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGK 228 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (892)
-+|.++.+++|++.|. -+++++||++|+|||.|++.++... ...| +-++++.-.|..+|-..=-.
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhcccccc
Confidence 6899999999999988 4799999999999999999999987 3334 23445554444444211101
Q ss_pred hcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccccc---------cccccccc-----cCCC----CCCCcEEE-
Q 002691 229 KIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV---------DLTKVGVP-----VPNS----RNVASKVV- 289 (892)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------~~~~~~~~-----l~~~----~~~gs~Ii- 289 (892)
.+| .=+....+.+ +..+.+.-+++||.++... .+.++..| |.+. .-.=|.|+
T Consensus 399 YIG--------amPGrIiQ~m-kka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 399 YIG--------AMPGKIIQGM-KKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ccc--------cCChHHHHHH-HHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 111 1111111111 1234467799999997421 11111111 1110 01123444
Q ss_pred EEecch-h-h-cccccccceEEccCCChHHHHHHHHHHh
Q 002691 290 FTTRLL-D-V-CGLMEAHKKFKVECLSDEDAWQLFREKV 325 (892)
Q Consensus 290 iTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 325 (892)
|||-|. + + +..+....++++.+-+++|=.++=+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 455432 2 2 2333455689999999999887766654
No 157
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.00096 Score=71.35 Aligned_cols=95 Identities=11% Similarity=0.093 Sum_probs=58.3
Q ss_pred cCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEecchh-hccc-ccccceEEccCCChHHHHHHHHHHhCCccc
Q 002691 255 KKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTRLLD-VCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETL 330 (892)
Q Consensus 255 ~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 330 (892)
+++-++|+|+++.. .....+...+-.- ..++.+|+||.+.. +... .+....+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-p~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~--- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEP-SGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE--- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCC-CCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc---
Confidence 34455677999753 2233333333222 34677777777653 3322 233457899999999999888765311
Q ss_pred CCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 331 NYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 331 ~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
...+.+..++..++|.|..+..+
T Consensus 181 ----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----CChHHHHHHHHHcCCCHHHHHHH
Confidence 11344567789999999866544
No 158
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.58 E-value=8e-06 Score=91.54 Aligned_cols=213 Identities=25% Similarity=0.262 Sum_probs=130.3
Q ss_pred CCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCEEeccCCCccccchhhhcCCCCCEEec
Q 002691 536 RCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPGELEILVNLKCLNL 615 (892)
Q Consensus 536 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 615 (892)
.+..+..+.+..|.+..+... +..+++|.+|++.+|.+..+...+..+++|++|++++|.|+.+. .+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcc-cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 445556666777766553222 67889999999999999998866889999999999999999885 6788889999999
Q ss_pred CCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHH--hcCCCCCcEEEEEecchhhHHHhhcc
Q 002691 616 NHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEE--LLGLKNLEVLEFTLTSSHVLQMFLTS 693 (892)
Q Consensus 616 ~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~l~~L~~L~l~~~~~~~~~~~~~~ 693 (892)
.+|. +..++. +..+.+|+.+++..+ .+. .++. +..+.+|+.+.+..+....+..+...
T Consensus 148 ~~N~-i~~~~~--~~~l~~L~~l~l~~n------~i~-----------~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~ 207 (414)
T KOG0531|consen 148 SGNL-ISDISG--LESLKSLKLLDLSYN------RIV-----------DIENDELSELISLEELDLGGNSIREIEGLDLL 207 (414)
T ss_pred ccCc-chhccC--CccchhhhcccCCcc------hhh-----------hhhhhhhhhccchHHHhccCCchhcccchHHH
Confidence 9996 676665 667888888887632 111 2223 46777888887776665443322211
Q ss_pred chhhccceeeEecCCCCCcccccccccccC--CCCEEeEecCCCccceeeccccccCCCCcCEEEEecCCCCCCCccccc
Q 002691 694 NELRRCSQALFLDGLKNSKWIDASQLAELK--HLNRLRIRDCEELEELKVDLRQSCVFNSLQKVQISLCSKLKDLTFLVF 771 (892)
Q Consensus 694 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~ 771 (892)
. .+..+.+.... +..+ ..+..+. +|+.+++.+.+. ...+..+ ..+.++..|++.+. .+..+..+..
T Consensus 208 ~----~l~~~~l~~n~-i~~~--~~l~~~~~~~L~~l~l~~n~i-~~~~~~~---~~~~~l~~l~~~~n-~~~~~~~~~~ 275 (414)
T KOG0531|consen 208 K----KLVLLSLLDNK-ISKL--EGLNELVMLHLRELYLSGNRI-SRSPEGL---ENLKNLPVLDLSSN-RISNLEGLER 275 (414)
T ss_pred H----HHHHhhccccc-ceec--cCcccchhHHHHHHhcccCcc-ccccccc---cccccccccchhhc-cccccccccc
Confidence 1 12222222211 1111 1222222 377777776432 2221112 24677777777665 4444433444
Q ss_pred CCCccEEEEec
Q 002691 772 APNVKSIEIRS 782 (892)
Q Consensus 772 l~~L~~L~L~~ 782 (892)
.+.+..+....
T Consensus 276 ~~~~~~~~~~~ 286 (414)
T KOG0531|consen 276 LPKLSELWLND 286 (414)
T ss_pred cchHHHhccCc
Confidence 44554444444
No 159
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.58 E-value=2.3e-06 Score=94.74 Aligned_cols=125 Identities=27% Similarity=0.313 Sum_probs=76.5
Q ss_pred CccceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChh-hcCcCcCCEEe
Q 002691 513 GWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSR-ISKLVSLQHLD 591 (892)
Q Consensus 513 ~~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~ 591 (892)
.|.++...+++.|.+..+..++.-++.|+.|+|+.|.+.+.. ++..+++|+.|||++|.+..+|.- ...+ +|+.|+
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeee
Confidence 455666667777776666555566677777777777766554 366677777777777777766642 1222 377777
Q ss_pred ccCCCccccchhhhcCCCCCEEecCCCcCccccc-hhhhcCCCcccEEEeec
Q 002691 592 LSHTRIKELPGELEILVNLKCLNLNHTMYLSVIP-RQLISKFSMLHVLRMFS 642 (892)
Q Consensus 592 l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~p-~~~i~~l~~L~~L~l~~ 642 (892)
+++|.++.|- ++.+|.+|+.||+++|- +.... -..++.|..|+.|.+.+
T Consensus 239 lrnN~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 239 LRNNALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred ecccHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcC
Confidence 7777776663 66677777777777663 22111 01144555556555554
No 160
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.57 E-value=0.00035 Score=70.56 Aligned_cols=175 Identities=15% Similarity=0.206 Sum_probs=105.0
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEE-EEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFV-IWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~-~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
++|-+..++-+.+.+. ..+...+|++|.|||+-|..++... .-.+-|.+. +=.++|......-+-..+
T Consensus 38 ~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki------- 109 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI------- 109 (346)
T ss_pred hcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh-------
Confidence 7899999988888887 7889999999999999999998887 333445443 223444432222111110
Q ss_pred CCcccCCChHHHHHHHHHHhcc---Cc-EEEEEeccccc--ccccccccccCCCCCCCcEEEEEecchh-hcc-cccccc
Q 002691 234 DGLWKNRSREEKALDIFKVLSK---KK-FVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTRLLD-VCG-LMEAHK 305 (892)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~---kr-~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR~~~-v~~-~~~~~~ 305 (892)
.+......... ...+ ++ -.+|||+++.. +.|..+.....+. ...++.|..+.... +-. ......
T Consensus 110 ------k~fakl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~-s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 110 ------KNFAKLTVLLK-RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF-SRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred ------cCHHHHhhccc-cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc-ccceEEEEEcCChhhCChHHHhhHH
Confidence 00110000000 0011 23 48899999763 4577665555443 45566555443322 211 112234
Q ss_pred eEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCch
Q 002691 306 KFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLP 351 (892)
Q Consensus 306 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 351 (892)
.|..++|.+++...-++..+..+....+ .+..+.|++.++|--
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDL 224 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcH
Confidence 6899999999999988888766553333 456778999998854
No 161
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0009 Score=77.56 Aligned_cols=187 Identities=14% Similarity=0.134 Sum_probs=99.1
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
+||.+..++.+.+.+. ...+.++|+.|+||||+|+.+++..... ...+ ...++.-.....|...-...
T Consensus 18 iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~-~~~~-------~~~c~~c~~c~~i~~g~~~d 89 (576)
T PRK14965 18 LTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE-QGLT-------AEPCNVCPPCVEITEGRSVD 89 (576)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC-CCCC-------CCCCCccHHHHHHhcCCCCC
Confidence 8999999999988887 4567899999999999999998875211 1100 00000011111111100000
Q ss_pred CCcc---cCCChHHHHHHHHHHh-----ccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEE-Eecchhhccc-c
Q 002691 234 DGLW---KNRSREEKALDIFKVL-----SKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVF-TTRLLDVCGL-M 301 (892)
Q Consensus 234 ~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iii-TTR~~~v~~~-~ 301 (892)
--.. .....++ .+.+.+.+ .+++-++|+|++..- .....+...+-.. .....+|+ ||....+... .
T Consensus 90 ~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-p~~~~fIl~t~~~~kl~~tI~ 167 (576)
T PRK14965 90 VFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-PPHVKFIFATTEPHKVPITIL 167 (576)
T ss_pred eeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-CCCeEEEEEeCChhhhhHHHH
Confidence 0000 0011111 12222222 245568999999643 2233333333222 33455554 5444444322 2
Q ss_pred cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCch-hHHHHH
Q 002691 302 EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLP-LALITI 357 (892)
Q Consensus 302 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 357 (892)
.....+++.+++.++....+...+...... -..+....|++.++|.. .|+..+
T Consensus 168 SRc~~~~f~~l~~~~i~~~L~~i~~~egi~---i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 168 SRCQRFDFRRIPLQKIVDRLRYIADQEGIS---ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HhhhhhhcCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 234578899999999888777655433211 12456777889998865 444444
No 162
>PRK08116 hypothetical protein; Validated
Probab=97.56 E-value=0.0001 Score=76.60 Aligned_cols=102 Identities=23% Similarity=0.250 Sum_probs=58.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLS 254 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (892)
..+.++|.+|+|||.||.++++.... ....+++++ ..+++..+....... ...+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE---KGVPVIFVN------FPQLLNRIKSTYKSS----GKED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEE------HHHHHHHHHHHHhcc----cccc----HHHHHHHhc
Confidence 35899999999999999999999732 234456665 344555555443221 1111 222334455
Q ss_pred cCcEEEEEecccc--cccccc--cccccCCCCCCCcEEEEEecc
Q 002691 255 KKKFVLLLDDLWE--RVDLTK--VGVPVPNSRNVASKVVFTTRL 294 (892)
Q Consensus 255 ~kr~LlVlDdv~~--~~~~~~--~~~~l~~~~~~gs~IiiTTR~ 294 (892)
+-. ||||||+.. ..+|.. +...+......|..+||||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444 899999942 223321 222121111356679999974
No 163
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.54 E-value=0.0026 Score=76.94 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=36.4
Q ss_pred ccchHHHHHHHHHhhc---------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT---------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|.+..++++.+++. ..++.++|++|+|||++|+.+++..
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999988765 3579999999999999999999987
No 164
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.54 E-value=0.00029 Score=84.51 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=84.9
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCC--CC-cEEEEEEeCCccCHHHHHHHHHHhcC
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPY--GF-DFVIWVVVSKDLQLEKIQETIGKKIG 231 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~f-~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (892)
++||+.++++++..|. ..-+.++|.+|+|||++|+.++++.....- .+ ...+|. ++ ...+. ....
T Consensus 184 ~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l~----a~~~ 254 (731)
T TIGR02639 184 LIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSLL----AGTK 254 (731)
T ss_pred ccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHHh----hhcc
Confidence 8999999999999888 456779999999999999999988622111 11 223332 11 11111 1000
Q ss_pred CCCCcccCCChHHHHHHHHHHhc-cCcEEEEEecccccc----------cccccccccCCCCCCC-cEEEEEecchhhcc
Q 002691 232 LFDGLWKNRSREEKALDIFKVLS-KKKFVLLLDDLWERV----------DLTKVGVPVPNSRNVA-SKVVFTTRLLDVCG 299 (892)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~----------~~~~~~~~l~~~~~~g-s~IiiTTR~~~v~~ 299 (892)
.....++....+.+.++ .++.+|++|++..-. +...+..+.. ..| -++|-+|..++...
T Consensus 255 ------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 255 ------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEYKN 325 (731)
T ss_pred ------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHHHH
Confidence 11223334444444443 468899999996321 1112222211 223 34444444322111
Q ss_pred -------cccccceEEccCCChHHHHHHHHHHh
Q 002691 300 -------LMEAHKKFKVECLSDEDAWQLFREKV 325 (892)
Q Consensus 300 -------~~~~~~~~~l~~L~~~ea~~Lf~~~a 325 (892)
.......+.+++++.++..++++...
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11123478999999999999998654
No 165
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.002 Score=74.40 Aligned_cols=185 Identities=16% Similarity=0.131 Sum_probs=100.1
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
++|.+..++.+.+++. ...+-++|+.|+||||+|+.++...... ...+ ..+++.-...+.|.......
T Consensus 18 viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~-~~~~-------~~pC~~C~~C~~i~~g~~~d 89 (559)
T PRK05563 18 VVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL-NPPD-------GEPCNECEICKAITNGSLMD 89 (559)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCC-------CCCCCccHHHHHHhcCCCCC
Confidence 8999999999999887 4567789999999999999998775211 1000 00111111111221111000
Q ss_pred CCcc---cCCChHHHHHHHHHH-----hccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEE-Eecchhhccc-c
Q 002691 234 DGLW---KNRSREEKALDIFKV-----LSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVF-TTRLLDVCGL-M 301 (892)
Q Consensus 234 ~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iii-TTR~~~v~~~-~ 301 (892)
.... .....+ ....+.+. ..+++-++|+|++..- ..+..+...+... .....+|+ ||....+... .
T Consensus 90 v~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep-p~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 90 VIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP-PAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred eEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-CCCeEEEEEeCChhhCcHHHH
Confidence 0000 001111 12222222 2356678899999643 2333443333322 23444554 4444333322 2
Q ss_pred cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHH
Q 002691 302 EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALI 355 (892)
Q Consensus 302 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (892)
.....+++.+++.++....+...+....... ..+....|++.++|-+..+.
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i---~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYILDKEGIEY---EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 2345688999999998888887664332111 24567788889988775443
No 166
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.48 E-value=0.0018 Score=74.20 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=92.7
Q ss_pred ccchHHHHHHHHHhhc---------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHH
Q 002691 158 VVGLQSILEQVWSCLT---------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKI 222 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (892)
++|.+..++++.+.+. .+-+.++|++|+|||++|+.+++.. ...| +.++. .++
T Consensus 57 i~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~~~ 124 (495)
T TIGR01241 57 VAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----SDF 124 (495)
T ss_pred hCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----HHH
Confidence 6788877766655443 2358899999999999999999886 2222 22221 111
Q ss_pred HHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccccc----c--------c----cccccccCCC-CCCC
Q 002691 223 QETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV----D--------L----TKVGVPVPNS-RNVA 285 (892)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----~--------~----~~~~~~l~~~-~~~g 285 (892)
... . ...........+.......+.+|++||++.-. . . ..+...+... ...+
T Consensus 125 ~~~----~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 125 VEM----F-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHH----H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 111 0 01112222333333344567899999996421 0 0 0111111100 0234
Q ss_pred cEEEEEecchhhc-----ccccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCc-hhHHHH
Q 002691 286 SKVVFTTRLLDVC-----GLMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGL-PLALIT 356 (892)
Q Consensus 286 s~IiiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~ 356 (892)
-.||.||...... +.......+.++..+.++-.++|............ .....+++.+.|. +-.|..
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCCHHHHHH
Confidence 4566666654321 11123457889999998888999887654321111 1234677777764 444433
No 167
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0016 Score=71.73 Aligned_cols=182 Identities=16% Similarity=0.151 Sum_probs=103.0
Q ss_pred ccchHHHHHHHHHhhc---------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHH
Q 002691 158 VVGLQSILEQVWSCLT---------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKI 222 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (892)
+=|.++.+.++.+.+. .+=|.++|++|.|||.||+++++.. .-.| +.++.+
T Consensus 192 iGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~isAp------ 257 (802)
T KOG0733|consen 192 IGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSISAP------ 257 (802)
T ss_pred ccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeecch------
Confidence 4579998888888765 4568899999999999999999997 2233 333322
Q ss_pred HHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccccc---cc----------cccc---cccCC--CCCC
Q 002691 223 QETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV---DL----------TKVG---VPVPN--SRNV 284 (892)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~----------~~~~---~~l~~--~~~~ 284 (892)
+|+..+ ...+++...+.+.+....-++++++|+++-.. +| .++. ..+.. ..+.
T Consensus 258 --eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 --EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred --hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 233332 23344444455555667789999999997310 01 0111 11111 1123
Q ss_pred CcEEEEEecchhhc----cccc-ccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHH
Q 002691 285 ASKVVFTTRLLDVC----GLME-AHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGR 359 (892)
Q Consensus 285 gs~IiiTTR~~~v~----~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 359 (892)
+--||-+|..++.. +..+ .++.|.+.--+++.-.++++..+.+-....+-++..+|+.--.+.|---.|+...|+
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa 408 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAA 408 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHH
Confidence 33333344334332 1112 245677777777766667766655433333455666665544444545556666665
Q ss_pred HHh
Q 002691 360 AMA 362 (892)
Q Consensus 360 ~l~ 362 (892)
...
T Consensus 409 ~vA 411 (802)
T KOG0733|consen 409 FVA 411 (802)
T ss_pred HHH
Confidence 543
No 168
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0077 Score=67.79 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=87.2
Q ss_pred ccchHHHHHHHHHhhc---------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHH
Q 002691 158 VVGLQSILEQVWSCLT---------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGK 228 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (892)
-+|.++-+++|++++. -++++.+|++|||||.+|+.|+... . +++| -++|+.-.|+.+|-..=-.
T Consensus 413 HYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL-n-RkFf----RfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 413 HYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL-N-RKFF----RFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred ccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh-C-CceE----EEeccccccHHhhccccee
Confidence 6899999999999987 5799999999999999999999987 2 2333 3456666666555321111
Q ss_pred hcCCCCCcccCCChHHHHHHHHHHh---ccCcEEEEEeccccc------------------ccccccccccCCCCCCCcE
Q 002691 229 KIGLFDGLWKNRSREEKALDIFKVL---SKKKFVLLLDDLWER------------------VDLTKVGVPVPNSRNVASK 287 (892)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~------------------~~~~~~~~~l~~~~~~gs~ 287 (892)
.++. =+. ++.+.| +...-|+.+|.|+.. ++=..+...+.+-.-.=|+
T Consensus 487 YVGA--------MPG----kiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 487 YVGA--------MPG----KIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred eecc--------CCh----HHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhh
Confidence 1111 111 233333 335668999999741 1111111111111122366
Q ss_pred EEE-Eecchhhc----ccccccceEEccCCChHHHHHHHHHHh
Q 002691 288 VVF-TTRLLDVC----GLMEAHKKFKVECLSDEDAWQLFREKV 325 (892)
Q Consensus 288 Iii-TTR~~~v~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 325 (892)
|++ .|-| .+. ........++|.+-..+|-.++-.++.
T Consensus 555 VLFicTAN-~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTAN-VIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEecc-ccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 664 4433 111 112334578888888888777665553
No 169
>PRK08118 topology modulation protein; Reviewed
Probab=97.45 E-value=8.5e-05 Score=71.36 Aligned_cols=36 Identities=36% Similarity=0.479 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEE
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIW 210 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 210 (892)
+.|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999997222356777775
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00042 Score=64.65 Aligned_cols=88 Identities=25% Similarity=0.090 Sum_probs=49.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLS 254 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (892)
..+.|+|++|+||||+|+.++.... .....++++..+........... ....... ............+.+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGK---KASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhcc---CCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999872 22234556655443322222111 0000000 022233334444555555
Q ss_pred cCc-EEEEEecccccc
Q 002691 255 KKK-FVLLLDDLWERV 269 (892)
Q Consensus 255 ~kr-~LlVlDdv~~~~ 269 (892)
..+ .+|++|++....
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 444 999999997643
No 171
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.00022 Score=67.48 Aligned_cols=101 Identities=28% Similarity=0.466 Sum_probs=65.7
Q ss_pred ceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccC--hhhcCcCcCCEEecc
Q 002691 516 KIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELP--SRISKLVSLQHLDLS 593 (892)
Q Consensus 516 ~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~ 593 (892)
....+++++|.+..++.. +.++.|.+|.+.+|.++.+.+..-..+++|..|.|.+|++.++- ..+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNL-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccC-CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 345567777776665543 77777777777777777777665555667777777777776652 224556677777777
Q ss_pred CCCccccch----hhhcCCCCCEEecCC
Q 002691 594 HTRIKELPG----ELEILVNLKCLNLNH 617 (892)
Q Consensus 594 ~~~i~~lp~----~i~~l~~L~~L~l~~ 617 (892)
+|.++..+. .+..+++|++||+.+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 776664432 255666666666654
No 172
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.42 E-value=0.00051 Score=83.43 Aligned_cols=150 Identities=20% Similarity=0.221 Sum_probs=84.6
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCC--C-cEEEEEEeCCccCHHHHHHHHHHhcC
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYG--F-DFVIWVVVSKDLQLEKIQETIGKKIG 231 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f-~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (892)
++||+++++++++.|. ..-+.++|.+|+|||++|..++.+.....-. . +..+|. + +...++ .
T Consensus 181 ~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a--- 248 (821)
T CHL00095 181 VIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A--- 248 (821)
T ss_pred CCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c---
Confidence 8999999999999998 4566799999999999999998886211111 1 233442 1 111111 1
Q ss_pred CCCCcccCCChHHHHHHHHHHhc-cCcEEEEEecccccc---------cccccccccCCCCCCCcEEEEEecchhhcc--
Q 002691 232 LFDGLWKNRSREEKALDIFKVLS-KKKFVLLLDDLWERV---------DLTKVGVPVPNSRNVASKVVFTTRLLDVCG-- 299 (892)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~---------~~~~~~~~l~~~~~~gs~IiiTTR~~~v~~-- 299 (892)
... .....++....+.+.++ .++.+|++|++..-. +...+..+.... ..-++|.+|...+...
T Consensus 249 g~~---~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 249 GTK---YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRKHI 323 (821)
T ss_pred cCC---CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHHHH
Confidence 110 11223334444444333 468999999995211 111222221111 1245555555443311
Q ss_pred -----cccccceEEccCCChHHHHHHHHHH
Q 002691 300 -----LMEAHKKFKVECLSDEDAWQLFREK 324 (892)
Q Consensus 300 -----~~~~~~~~~l~~L~~~ea~~Lf~~~ 324 (892)
.......+.+...+.++...++...
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1122346788889999988887654
No 173
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.41 E-value=0.00044 Score=63.75 Aligned_cols=22 Identities=45% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 002691 177 IGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (892)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999997
No 174
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.41 E-value=2.2e-05 Score=69.12 Aligned_cols=90 Identities=26% Similarity=0.412 Sum_probs=80.4
Q ss_pred ceEEEEcccccccccccccC-CCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCEEeccC
Q 002691 516 KIRRLSLMENHIEDLSNIYP-RCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSH 594 (892)
Q Consensus 516 ~l~~L~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 594 (892)
.+..+++++|.+.++|..|. .++.+++|++.+|.+..+|.. +..|+.||.|+++.|++...|+-+..|.+|-+|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 57788999999999987654 456899999999999999988 8999999999999999999999999999999999999
Q ss_pred CCccccchhhhc
Q 002691 595 TRIKELPGELEI 606 (892)
Q Consensus 595 ~~i~~lp~~i~~ 606 (892)
+.+..+|..+-.
T Consensus 133 na~~eid~dl~~ 144 (177)
T KOG4579|consen 133 NARAEIDVDLFY 144 (177)
T ss_pred CccccCcHHHhc
Confidence 998888876433
No 175
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=7.5e-05 Score=87.39 Aligned_cols=138 Identities=21% Similarity=0.233 Sum_probs=87.1
Q ss_pred CCcccEEEecCCc-c-ccccchhhcCCCCCcEEEecCccccc--cChhhcCcCcCCEEeccCCCccccchhhhcCCCCCE
Q 002691 537 CPHLVTLFLNNNK-L-EVISSRFFHYMPSLKVLKLSHIQLTE--LPSRISKLVSLQHLDLSHTRIKELPGELEILVNLKC 612 (892)
Q Consensus 537 ~~~L~~L~l~~~~-~-~~~~~~~~~~l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 612 (892)
-.+|+.|+++|.. + ...+...-..+|+|+.|.+++-.+.. +-.-..++++|..||+++|+++.+ .++++|+||++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 3678888888762 1 22333434557889998888865542 333445778889999999988888 68889999999
Q ss_pred EecCCCcCccccchhhhcCCCcccEEEeeccccccCCCCCCCCcccchhhhHHHHhcCCCCCcEEEEEecch
Q 002691 613 LNLNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGVLFARDELLVEELLGLKNLEVLEFTLTSS 684 (892)
Q Consensus 613 L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 684 (892)
|.+.+-.+....--..+-.|++|++|+++.........+ ....++.-..|++|+.|+.+.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~i---------i~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKI---------IEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHH---------HHHHHHhcccCccccEEecCCcch
Confidence 888765432211111266788888888886322211110 112344445578888888875553
No 176
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0021 Score=66.60 Aligned_cols=190 Identities=18% Similarity=0.231 Sum_probs=108.8
Q ss_pred ccchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHH
Q 002691 158 VVGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEK 221 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (892)
+=|.++.+++|.+.+. .+=|-++|++|.|||-||++|+++. ...| +.|..+ +-
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS---El 221 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS---EL 221 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH---HH
Confidence 3478999999988876 4568899999999999999999986 3333 333322 11
Q ss_pred HHHHHHHhcCCCCCcccCCChHHHHHHHHHHhc-cCcEEEEEeccccc-------------c---cccccccccCCCC--
Q 002691 222 IQETIGKKIGLFDGLWKNRSREEKALDIFKVLS-KKKFVLLLDDLWER-------------V---DLTKVGVPVPNSR-- 282 (892)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~-------------~---~~~~~~~~l~~~~-- 282 (892)
+++-| + ....+...+.+.-+ ..+..|.+|.++.. + .+-++...+ ++|
T Consensus 222 VqKYi-----G--------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql-DGFD~ 287 (406)
T COG1222 222 VQKYI-----G--------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL-DGFDP 287 (406)
T ss_pred HHHHh-----c--------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc-cCCCC
Confidence 22111 1 11233444444444 46889999998631 0 111222111 111
Q ss_pred CCCcEEEEEecchhhcc-----cccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCch----hH
Q 002691 283 NVASKVVFTTRLLDVCG-----LMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLP----LA 353 (892)
Q Consensus 283 ~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP----La 353 (892)
...-|||.+|...++.. --.-++.++++.-+.+.-.++|+-++..-....+-+++. +++.|.|.- -|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCCchHHHHH
Confidence 23568998887666532 222356788886666666677877776554444455554 445555543 34
Q ss_pred HHHHHHHHh--cC---CChHHHHHHHHH
Q 002691 354 LITIGRAMA--YK---TTPEEWRYAIQV 376 (892)
Q Consensus 354 i~~~g~~l~--~~---~~~~~w~~~l~~ 376 (892)
+.+=|++++ .. -+.+.+..+.++
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 444455443 22 244455554444
No 177
>CHL00176 ftsH cell division protein; Validated
Probab=97.37 E-value=0.0032 Score=73.31 Aligned_cols=165 Identities=14% Similarity=0.160 Sum_probs=93.0
Q ss_pred ccchHHHHHHHHHhhc---------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHH
Q 002691 158 VVGLQSILEQVWSCLT---------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKI 222 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (892)
++|.++.++++.+.+. .+-|.++|++|+|||++|+++++.. ... |+.++.. ++
T Consensus 185 v~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s----~f 252 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS----EF 252 (638)
T ss_pred ccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----HH
Confidence 7888877777666543 2368999999999999999999876 222 2222211 11
Q ss_pred HHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccccc------------c----ccccccccCCC-CCCC
Q 002691 223 QETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV------------D----LTKVGVPVPNS-RNVA 285 (892)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~~~~~l~~~-~~~g 285 (892)
... . ...........+.+...+.+.+|++||++.-. . +..+...+... ...+
T Consensus 253 ~~~----~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 253 VEM----F-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHH----h-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 110 0 00111222333444445688999999996321 1 11121111110 0345
Q ss_pred cEEEEEecchhhcc-----cccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCC
Q 002691 286 SKVVFTTRLLDVCG-----LMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGG 349 (892)
Q Consensus 286 s~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g 349 (892)
-.||.||...+... .......+.++..+.++-.++++.++..... ........+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCC
Confidence 56676776644322 1122457788888999999999887754221 112334667777776
No 178
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.33 E-value=0.0052 Score=61.25 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=35.7
Q ss_pred ccchHHHHHHHHHhhc-------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT-------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|.|..++.+++-.. ..-+-+||..|+|||++++++.+.+
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 8999999988877544 5677889999999999999999988
No 179
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.32 E-value=6.2e-05 Score=86.91 Aligned_cols=84 Identities=27% Similarity=0.254 Sum_probs=41.1
Q ss_pred CCCcccEEEecCC-ccccc-cchhhcCCCCCcEEEecCc--ccccc----ChhhcCcCcCCEEeccCCC-ccc--cchhh
Q 002691 536 RCPHLVTLFLNNN-KLEVI-SSRFFHYMPSLKVLKLSHI--QLTEL----PSRISKLVSLQHLDLSHTR-IKE--LPGEL 604 (892)
Q Consensus 536 ~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~L~~~--~l~~l----p~~i~~L~~L~~L~l~~~~-i~~--lp~~i 604 (892)
.++.|+.|.+.++ .+... .......+++|+.|+++++ .+... +.....+.+|+.|+++++. ++. +..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3667777777666 22221 1223456677777777663 11111 1223344566666666654 442 21112
Q ss_pred hcCCCCCEEecCCCc
Q 002691 605 EILVNLKCLNLNHTM 619 (892)
Q Consensus 605 ~~l~~L~~L~l~~~~ 619 (892)
..+++|++|.+.+|.
T Consensus 266 ~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCS 280 (482)
T ss_pred hhCCCcceEccCCCC
Confidence 225566666655554
No 180
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.0015 Score=70.47 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=83.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc--EEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFD--FVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFK 251 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (892)
...+.|||..|.|||.|++++.+.. ..... .++++ + .+......+..+. +.....+++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~--~----se~f~~~~v~a~~-----------~~~~~~Fk~ 172 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL--T----SEDFTNDFVKALR-----------DNEMEKFKE 172 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec--c----HHHHHHHHHHHHH-----------hhhHHHHHH
Confidence 6789999999999999999999997 33333 34443 2 2233333333321 122344555
Q ss_pred HhccCcEEEEEecccccc---c-ccccccccCCCCCCCcEEEEEecchh---------hcccccccceEEccCCChHHHH
Q 002691 252 VLSKKKFVLLLDDLWERV---D-LTKVGVPVPNSRNVASKVVFTTRLLD---------VCGLMEAHKKFKVECLSDEDAW 318 (892)
Q Consensus 252 ~l~~kr~LlVlDdv~~~~---~-~~~~~~~l~~~~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~ 318 (892)
.. .-=++++||++--. . -+.+...|..-...|..||+|++... +...+...-++.+.+.+.+...
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 55 33488899996421 1 12222222211133558999986432 2334445567899999999999
Q ss_pred HHHHHHhCCcccCCC
Q 002691 319 QLFREKVGEETLNYH 333 (892)
Q Consensus 319 ~Lf~~~a~~~~~~~~ 333 (892)
..+.+++.......+
T Consensus 251 aiL~kka~~~~~~i~ 265 (408)
T COG0593 251 AILRKKAEDRGIEIP 265 (408)
T ss_pred HHHHHHHHhcCCCCC
Confidence 999998765543333
No 181
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0062 Score=64.83 Aligned_cols=190 Identities=17% Similarity=0.153 Sum_probs=103.9
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCC-------------CCCCcEEEEEEeCCccCHH
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNR-------------PYGFDFVIWVVVSKDLQLE 220 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------~~~f~~~~wv~vs~~~~~~ 220 (892)
++|.+..++.+...+. ....-++|+.|+||+++|..+++..... ..|.| ..|+.-....+-.
T Consensus 6 iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g~ 84 (314)
T PRK07399 6 LIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQGK 84 (314)
T ss_pred hCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccccc
Confidence 7899999999999887 5789999999999999999887765211 11222 2333211000000
Q ss_pred HHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh-----ccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEec
Q 002691 221 KIQETIGKKIGLFDGLWKNRSREEKALDIFKVL-----SKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTR 293 (892)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR 293 (892)
.+-..-+...+..... ...-.-+.++.+.+.+ .+.+-++|+|+++.. .....+...+-.- . .+.+|++|.
T Consensus 85 ~~~~~~~~~~~~~~~~-~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP-p-~~~fILi~~ 161 (314)
T PRK07399 85 LITASEAEEAGLKRKA-PPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP-G-NGTLILIAP 161 (314)
T ss_pred ccchhhhhhccccccc-cccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC-C-CCeEEEEEC
Confidence 0000011111100000 0011112233444444 356779999999643 2233333333222 3 334555554
Q ss_pred c-hhhccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 294 L-LDVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 294 ~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
+ ..+... .+....+.+.+++.++..+.+.+...... .......++..++|.|..+..+
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 3 333332 23356789999999999999987642211 1111357889999999766543
No 182
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.28 E-value=0.0056 Score=73.34 Aligned_cols=41 Identities=29% Similarity=0.425 Sum_probs=37.3
Q ss_pred ccchHHHHHHHHHhhc---------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT---------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|.++.+++|++++. ..++.++|++|+||||+|+.++...
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999998887 3589999999999999999999876
No 183
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.28 E-value=0.00082 Score=67.44 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVV 213 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 213 (892)
.++|+|..|+|||||++.+.... ...|+++++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 67899999999999999998876 667888877754
No 184
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.26 E-value=0.0019 Score=78.74 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=83.7
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC----cE-EEEEEeCCccCHHHHHHHHHHh
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGF----DF-VIWVVVSKDLQLEKIQETIGKK 229 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f----~~-~~wv~vs~~~~~~~~~~~i~~~ 229 (892)
+|||+.++++++..|. ..-+.++|.+|+|||++|..++.+... .... .. ++.+.+ ..+. .
T Consensus 175 ~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l~~------~~l~----a- 242 (852)
T TIGR03346 175 VIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLALDM------GALI----A- 242 (852)
T ss_pred CCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEeeH------HHHh----h-
Confidence 8999999999999988 456678999999999999999888621 1111 12 222221 1111 0
Q ss_pred cCCCCCcccCCChHHHHHHHHHHhc--cCcEEEEEecccccc---------cccccccccCCCCCCCcEEEEEecchhhc
Q 002691 230 IGLFDGLWKNRSREEKALDIFKVLS--KKKFVLLLDDLWERV---------DLTKVGVPVPNSRNVASKVVFTTRLLDVC 298 (892)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---------~~~~~~~~l~~~~~~gs~IiiTTR~~~v~ 298 (892)
+.. .....+.....+.+.+. +++.+|++|++..-. +...+..+.... + .-++|-+|..++..
T Consensus 243 -~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g-~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 -GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-G-ELHCIGATTLDEYR 315 (852)
T ss_pred -cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-C-ceEEEEeCcHHHHH
Confidence 000 11122333334444442 468999999996321 111222222111 1 23444444433321
Q ss_pred c-------cccccceEEccCCChHHHHHHHHHHh
Q 002691 299 G-------LMEAHKKFKVECLSDEDAWQLFREKV 325 (892)
Q Consensus 299 ~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a 325 (892)
. .......+.++..+.++...++....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 11123467899999999999887654
No 185
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.26 E-value=0.0017 Score=78.95 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=37.6
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++||+.++.+++..|. ..-+.++|.+|+||||+|..++.+.
T Consensus 180 vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 180 VIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999998 5567799999999999999999886
No 186
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.25 E-value=0.0025 Score=75.67 Aligned_cols=151 Identities=20% Similarity=0.219 Sum_probs=86.1
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC---cEEEEEEeCCccCHHHHHHHHHHhcC
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGF---DFVIWVVVSKDLQLEKIQETIGKKIG 231 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (892)
++||++++++++..|. ..-+.++|.+|+|||++|+.++.........+ ++.+|. + +...+ +.
T Consensus 188 liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-l----~~~~l----la--- 255 (758)
T PRK11034 188 LIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-L----DIGSL----LA--- 255 (758)
T ss_pred CcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-c----cHHHH----hc---
Confidence 8999999999999888 44567899999999999999998752221111 333432 1 11111 11
Q ss_pred CCCCcccCCChHHHHHHHHHHh-ccCcEEEEEeccccc----------ccccccccccCCCCCCCcEEEEEecchhhcc-
Q 002691 232 LFDGLWKNRSREEKALDIFKVL-SKKKFVLLLDDLWER----------VDLTKVGVPVPNSRNVASKVVFTTRLLDVCG- 299 (892)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~~~~~~~~l~~~~~~gs~IiiTTR~~~v~~- 299 (892)
... ...+.+.....+.+.+ +..+.+|++|++..- .+...+..++... ..-+||-+|..++...
T Consensus 256 G~~---~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 256 GTK---YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNI 330 (758)
T ss_pred ccc---hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHHH
Confidence 000 1112333334444444 346789999999632 1121222222222 1344554444333211
Q ss_pred ------cccccceEEccCCChHHHHHHHHHHh
Q 002691 300 ------LMEAHKKFKVECLSDEDAWQLFREKV 325 (892)
Q Consensus 300 ------~~~~~~~~~l~~L~~~ea~~Lf~~~a 325 (892)
.......+.+++.+.+++.+++....
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11123578999999999999998654
No 187
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.016 Score=57.61 Aligned_cols=180 Identities=19% Similarity=0.230 Sum_probs=101.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe-CCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVV-SKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKV 252 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (892)
.+++.++|.-|.|||++++++.... .. +.++-|.+ ........+...|...+.......-....+.....+.+.
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~-~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASL-NE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhc-CC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 5699999999999999999666655 21 11222333 334567788888988887632110111122333333333
Q ss_pred h-ccCc-EEEEEeccccc--ccccccc--cccC-CCCCCCcEEEEE--e-----cchhhcccccccce-EEccCCChHHH
Q 002691 253 L-SKKK-FVLLLDDLWER--VDLTKVG--VPVP-NSRNVASKVVFT--T-----RLLDVCGLMEAHKK-FKVECLSDEDA 317 (892)
Q Consensus 253 l-~~kr-~LlVlDdv~~~--~~~~~~~--~~l~-~~~~~gs~IiiT--T-----R~~~v~~~~~~~~~-~~l~~L~~~ea 317 (892)
. +++| ..++.||..+. ..++.+. ..+- ++.+.=+.+++- + |-......-..... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 4677 89999998542 1222211 1111 110111122221 1 11111111111223 89999999999
Q ss_pred HHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002691 318 WQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIG 358 (892)
Q Consensus 318 ~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 358 (892)
..++..+..+...+.+---.+....|.....|.|.+|..++
T Consensus 206 ~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 206 GLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 98888876554322222235667788999999999998775
No 188
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.20 E-value=0.0048 Score=68.13 Aligned_cols=134 Identities=19% Similarity=0.171 Sum_probs=85.8
Q ss_pred chHHHHHHHHHhhc-cc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc-CHHHHHHHHHHhcCCCCCc
Q 002691 160 GLQSILEQVWSCLT-AG-IIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL-QLEKIQETIGKKIGLFDGL 236 (892)
Q Consensus 160 Gr~~~~~~l~~~l~-~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~ 236 (892)
.|..-+.++.+.+. .. ++.|.|+-++||||+++.+.... .+. .+++..-+.. +..++ .
T Consensus 21 ~~~~~~~~l~~~~~~~~~i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-~------------ 81 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-L------------ 81 (398)
T ss_pred hHHhhhHHHHhhcccCCcEEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH-H------------
Confidence 34455666666666 44 99999999999999998777665 122 4444332211 11111 1
Q ss_pred ccCCChHHHHHHHHHHhccCcEEEEEecccccccccccccccCCCCCCCcEEEEEecchhhcc------cccccceEEcc
Q 002691 237 WKNRSREEKALDIFKVLSKKKFVLLLDDLWERVDLTKVGVPVPNSRNVASKVVFTTRLLDVCG------LMEAHKKFKVE 310 (892)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IiiTTR~~~v~~------~~~~~~~~~l~ 310 (892)
+....+.+.-..++..|+||.|....+|+.....+.+. ++. +|++|+-+..... ..+....+.+.
T Consensus 82 -------d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~-~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~ 152 (398)
T COG1373 82 -------DLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDR-GNL-DVLITGSSSSLLSKEISESLAGRGKDLELY 152 (398)
T ss_pred -------HHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHcc-ccc-eEEEECCchhhhccchhhhcCCCceeEEEC
Confidence 11111111111278899999999999999888887776 444 8888887765422 12334568999
Q ss_pred CCChHHHHHHH
Q 002691 311 CLSDEDAWQLF 321 (892)
Q Consensus 311 ~L~~~ea~~Lf 321 (892)
||+..|...+-
T Consensus 153 PlSF~Efl~~~ 163 (398)
T COG1373 153 PLSFREFLKLK 163 (398)
T ss_pred CCCHHHHHhhc
Confidence 99999887654
No 189
>PRK12377 putative replication protein; Provisional
Probab=97.17 E-value=0.00089 Score=68.27 Aligned_cols=73 Identities=25% Similarity=0.277 Sum_probs=45.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
...+.++|.+|+|||+||.++++... .....++++++. ++...+-..... ..... .+.+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~l 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQEL 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHHh
Confidence 46789999999999999999999982 223345666553 344444333211 11111 122222
Q ss_pred ccCcEEEEEeccc
Q 002691 254 SKKKFVLLLDDLW 266 (892)
Q Consensus 254 ~~kr~LlVlDdv~ 266 (892)
.+--||||||+.
T Consensus 162 -~~~dLLiIDDlg 173 (248)
T PRK12377 162 -CKVDLLVLDEIG 173 (248)
T ss_pred -cCCCEEEEcCCC
Confidence 356699999994
No 190
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0043 Score=67.16 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=89.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHH--
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFK-- 251 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-- 251 (892)
...+.+.|++|+|||+||..++..- .|+.+=-++... + ...++......+.+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~------m---------------iG~sEsaKc~~i~k~F 591 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPED------M---------------IGLSESAKCAHIKKIF 591 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHH------c---------------cCccHHHHHHHHHHHH
Confidence 4568899999999999999998763 566553332111 1 22233333334443
Q ss_pred --HhccCcEEEEEecccccccccccccccCC------------CCCCCcEE--EEEecchhhcccccc----cceEEccC
Q 002691 252 --VLSKKKFVLLLDDLWERVDLTKVGVPVPN------------SRNVASKV--VFTTRLLDVCGLMEA----HKKFKVEC 311 (892)
Q Consensus 252 --~l~~kr~LlVlDdv~~~~~~~~~~~~l~~------------~~~~gs~I--iiTTR~~~v~~~~~~----~~~~~l~~ 311 (892)
..+..=-.||+||+..-.+|..++..+.+ ....|-|. +-||....|...|+. ...|.++.
T Consensus 592 ~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpn 671 (744)
T KOG0741|consen 592 EDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPN 671 (744)
T ss_pred HHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCc
Confidence 34556679999999877777766543322 22334444 447777788777763 34688999
Q ss_pred CCh-HHHHHHHHHHh-CCcccCCCCChHHHHHHHHHHh
Q 002691 312 LSD-EDAWQLFREKV-GEETLNYHHDIPELAQMVAKEC 347 (892)
Q Consensus 312 L~~-~ea~~Lf~~~a-~~~~~~~~~~~~~~~~~i~~~c 347 (892)
++. ++..+.++..- |. +.+...++.+...+|
T Consensus 672 l~~~~~~~~vl~~~n~fs-----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 672 LTTGEQLLEVLEELNIFS-----DDEVRAIAEQLLSKK 704 (744)
T ss_pred cCchHHHHHHHHHccCCC-----cchhHHHHHHHhccc
Confidence 987 77777776642 21 234455666666665
No 191
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.16 E-value=0.0017 Score=75.00 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=36.4
Q ss_pred ccchHHHHHHHHHhhc--------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT--------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~--------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|-+..++++..++. ..++.|+|++|+||||+++.++...
T Consensus 86 l~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 86 LAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred hcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999888887 3569999999999999999999875
No 192
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.15 E-value=0.0048 Score=65.90 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=29.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVS 214 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 214 (892)
...+.++|..|+|||+||.++++... ..-..++|+++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEHH
Confidence 46799999999999999999999873 222356676543
No 193
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.12 E-value=0.0041 Score=59.35 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=67.7
Q ss_pred chHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCC-----------------CcEEEEEEeCC---
Q 002691 160 GLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYG-----------------FDFVIWVVVSK--- 215 (892)
Q Consensus 160 Gr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-----------------f~~~~wv~vs~--- 215 (892)
|-+...+.+.+.+. ...+.++|..|+||+|+|..+++........ ..-+.|+.-..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 44556666666666 5678999999999999999988775221111 11222332221
Q ss_pred ccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEec
Q 002691 216 DLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTR 293 (892)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR 293 (892)
...++++. ++...+.... ..+++=++|+||++.. ..+..++..+-.. ..++++|++|+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-p~~~~fiL~t~ 140 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEP-PENTYFILITN 140 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-TTTEEEEEEES
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCC-CCCEEEEEEEC
Confidence 12222222 2222222111 1245678999999753 2333443333332 56788888888
Q ss_pred chh-hcc-cccccceEEccCCC
Q 002691 294 LLD-VCG-LMEAHKKFKVECLS 313 (892)
Q Consensus 294 ~~~-v~~-~~~~~~~~~l~~L~ 313 (892)
+.. +.. .......+.+.+|+
T Consensus 141 ~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE----
T ss_pred ChHHChHHHHhhceEEecCCCC
Confidence 764 322 12223456666653
No 194
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=4.4e-05 Score=75.38 Aligned_cols=103 Identities=23% Similarity=0.234 Sum_probs=80.0
Q ss_pred CCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhcCcCcCCEEeccCCCccccc--hhhhcCCCCCEE
Q 002691 536 RCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELP--GELEILVNLKCL 613 (892)
Q Consensus 536 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L 613 (892)
.+.+.+.|+++||++.++.- ..+|+.|++|.||-|.|+.|- .+..+++|+.|.|+.|.|..+- ..+.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 35567788889998877643 678999999999999999885 4778899999999999888664 347888999999
Q ss_pred ecCCCcCccccch----hhhcCCCcccEEEee
Q 002691 614 NLNHTMYLSVIPR----QLISKFSMLHVLRMF 641 (892)
Q Consensus 614 ~l~~~~~l~~~p~----~~i~~l~~L~~L~l~ 641 (892)
-|..|+....-+. .++.-|++|+.|+-.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 9988876555443 246677888777643
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.011 Score=63.76 Aligned_cols=142 Identities=9% Similarity=0.086 Sum_probs=81.1
Q ss_pred ccc-hHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCC---C----------------CCcEEEEEEe
Q 002691 158 VVG-LQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRP---Y----------------GFDFVIWVVV 213 (892)
Q Consensus 158 ~vG-r~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~----------------~f~~~~wv~v 213 (892)
++| -+..++.+.+.+. ....-++|+.|+||||+|+.+.+...... . |.|.......
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 567 6667777777776 56779999999999999999987752110 0 1221111100
Q ss_pred CCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHH-----hccCcEEEEEecccccc--cccccccccCCCCCCCc
Q 002691 214 SKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKV-----LSKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVAS 286 (892)
Q Consensus 214 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs 286 (892)
+... ..++ +..+.+. ..+.+-++|+|+++... ....+...+..- ..++
T Consensus 87 ~~~i-----------------------~id~-ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-p~~~ 141 (329)
T PRK08058 87 GQSI-----------------------KKDQ-IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP-SGGT 141 (329)
T ss_pred cccC-----------------------CHHH-HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC-CCCc
Confidence 1111 1111 1222222 23456689999986432 233333333332 4567
Q ss_pred EEEEEecchh-hccc-ccccceEEccCCChHHHHHHHHHH
Q 002691 287 KVVFTTRLLD-VCGL-MEAHKKFKVECLSDEDAWQLFREK 324 (892)
Q Consensus 287 ~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 324 (892)
.+|++|.+.. +... .+....+++.+++.++..+.+...
T Consensus 142 ~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 142 TAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 7777776533 3322 233567899999999998888653
No 196
>PRK07261 topology modulation protein; Provisional
Probab=97.11 E-value=0.0015 Score=63.10 Aligned_cols=67 Identities=24% Similarity=0.416 Sum_probs=42.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhcc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSK 255 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 255 (892)
.|.|+|++|+||||||+.+.....-..-+.|...|-.. +...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 58999999999999999998775111123444444211 1223345566666666766
Q ss_pred CcEEEEEecccc
Q 002691 256 KKFVLLLDDLWE 267 (892)
Q Consensus 256 kr~LlVlDdv~~ 267 (892)
.+ .|+|+...
T Consensus 59 ~~--wIidg~~~ 68 (171)
T PRK07261 59 HD--WIIDGNYS 68 (171)
T ss_pred CC--EEEcCcch
Confidence 66 57788743
No 197
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.06 E-value=0.0098 Score=61.93 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhc-ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHH
Q 002691 162 QSILEQVWSCLT-AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQ 223 (892)
Q Consensus 162 ~~~~~~l~~~l~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 223 (892)
...++++..++. -..|.+.|.+|+|||++|+.++... .. ..+.++.+...+..+++
T Consensus 8 ~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 344455555555 5577799999999999999998754 22 23455555555555443
No 198
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.018 Score=61.24 Aligned_cols=170 Identities=8% Similarity=0.034 Sum_probs=89.2
Q ss_pred HHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCC---CCCcEE----EEEEeCCccCHHHHHHHHHHhcCCCC
Q 002691 166 EQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRP---YGFDFV----IWVVVSKDLQLEKIQETIGKKIGLFD 234 (892)
Q Consensus 166 ~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~----~wv~vs~~~~~~~~~~~i~~~l~~~~ 234 (892)
+.+...+. ...+-+.|+.|+||+++|..++....... ...+.. -++..+..+|+..+. +.
T Consensus 12 ~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~---------p~ 82 (325)
T PRK06871 12 QQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE---------PI 82 (325)
T ss_pred HHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc---------cc
Confidence 44444444 45677999999999999999987652111 000000 000011111111000 00
Q ss_pred CcccCCChHHHHHHHHHHh-----ccCcEEEEEecccccc--cccccccccCCCCCCCcEEEEEecch-hhccc-ccccc
Q 002691 235 GLWKNRSREEKALDIFKVL-----SKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVVFTTRLL-DVCGL-MEAHK 305 (892)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IiiTTR~~-~v~~~-~~~~~ 305 (892)
+ ...-..+.++.+.+.+ .+++-++|+|+++... ....+...+-.- ..++.+|++|.+. .+... .+...
T Consensus 83 ~--~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-p~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 83 D--NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP-RPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred c--CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChHhCchHHHhhce
Confidence 0 0001122222333333 3566788899997532 233333323222 4456677776654 44422 23346
Q ss_pred eEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHH
Q 002691 306 KFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALI 355 (892)
Q Consensus 306 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (892)
.+.+.+++.+++.+.+....... ...+...+..++|.|+.+.
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLAL 201 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHHH
Confidence 88999999999998887753211 1235567889999996443
No 199
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.017 Score=61.20 Aligned_cols=177 Identities=11% Similarity=0.030 Sum_probs=91.1
Q ss_pred HHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc-----EEEEEEeCCccCHHHHHHHHHHhcCCCC
Q 002691 164 ILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFD-----FVIWVVVSKDLQLEKIQETIGKKIGLFD 234 (892)
Q Consensus 164 ~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-----~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 234 (892)
..+.+...+. ...+.++|+.|+||+|+|..++...... .... ++-|+..+..+|+..+. ..+.
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~-~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~p~ 83 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLAS-GPDPAAAQRTRQLIAAGTHPDLQLVS-------FIPN 83 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCC-CCCCCCcchHHHHHhcCCCCCEEEEe-------cCCC
Confidence 3455555554 4468899999999999999888765211 1000 00001011111100000 0000
Q ss_pred Cccc---CCChHHHHHHHHHHh-----ccCcEEEEEecccccc--cccccccccCCCCCCCcEEEEEecch-hhccc-cc
Q 002691 235 GLWK---NRSREEKALDIFKVL-----SKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVVFTTRLL-DVCGL-ME 302 (892)
Q Consensus 235 ~~~~---~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IiiTTR~~-~v~~~-~~ 302 (892)
..-. ..-..+.++.+.+.+ .+++-++|+|+++... ....+...+-.- ..++.+|++|.+. .+... .+
T Consensus 84 ~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 84 RTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP-SPGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred cccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC-CCCCeEEEEECChhhCchHHHh
Confidence 0000 000122223333333 2466799999997532 222222222222 3456677766643 34322 23
Q ss_pred ccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002691 303 AHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIG 358 (892)
Q Consensus 303 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 358 (892)
....+.+.+++.+++.+.+... + .+ ...+..++..++|.|+.+..+.
T Consensus 163 RCq~i~~~~~~~~~~~~~L~~~-~-----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 163 RCQRLEFKLPPAHEALAWLLAQ-G-----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hheEeeCCCcCHHHHHHHHHHc-C-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 3457899999999998888653 1 11 2336678999999998765543
No 200
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.00 E-value=0.0042 Score=66.33 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=63.2
Q ss_pred HHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcE-EEEEEeCCc-cCHHHHHHHHHHhcCCCCCccc
Q 002691 165 LEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDF-VIWVVVSKD-LQLEKIQETIGKKIGLFDGLWK 238 (892)
Q Consensus 165 ~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~ 238 (892)
..++++.+. -..+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+. .++.++.+.+...+........
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 345677666 45679999999999999999998762 223343 466666654 4678888888876654321100
Q ss_pred CCC---hHHHHHHHHHHh--ccCcEEEEEeccc
Q 002691 239 NRS---REEKALDIFKVL--SKKKFVLLLDDLW 266 (892)
Q Consensus 239 ~~~---~~~~~~~l~~~l--~~kr~LlVlDdv~ 266 (892)
... .......+.+++ ++++++||+|++-
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 000 111122223333 4799999999984
No 201
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.0011 Score=62.84 Aligned_cols=101 Identities=22% Similarity=0.273 Sum_probs=65.9
Q ss_pred CcccEEEecCCccccccchhhcCCCCCcEEEecCccccccChhhc-CcCcCCEEeccCCCccccc--hhhhcCCCCCEEe
Q 002691 538 PHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRIS-KLVSLQHLDLSHTRIKELP--GELEILVNLKCLN 614 (892)
Q Consensus 538 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~ 614 (892)
.....++|++|.+..++. |..++.|.+|.|++|.|+.+-..+. -+++|..|.|.+|+|.++- ..+..++.|+.|.
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 455677888887766654 6778888888888888887744443 3566888888888777553 2355677788887
Q ss_pred cCCCcCccccc---hhhhcCCCcccEEEee
Q 002691 615 LNHTMYLSVIP---RQLISKFSMLHVLRMF 641 (892)
Q Consensus 615 l~~~~~l~~~p---~~~i~~l~~L~~L~l~ 641 (892)
+-+|+. ..-+ .-++.++++|++|+..
T Consensus 120 ll~Npv-~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNPV-EHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCch-hcccCceeEEEEecCcceEeehh
Confidence 777652 2211 1234556666666554
No 202
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.021 Score=66.69 Aligned_cols=99 Identities=23% Similarity=0.326 Sum_probs=62.3
Q ss_pred ccchHHHHHHHHHhhc------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHH
Q 002691 158 VVGLQSILEQVWSCLT------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQET 225 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (892)
++|-+..++.+.+.+. ..+....|+.|||||.||+.++... .+.=+..+-++.|+-..-..+
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsV--- 566 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSV--- 566 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHH---
Confidence 7888888888888877 4577889999999999999999887 221144444444443222222
Q ss_pred HHHhcCCCCCcccCCChHHHHHHHHHHhccCcE-EEEEecccc
Q 002691 226 IGKKIGLFDGLWKNRSREEKALDIFKVLSKKKF-VLLLDDLWE 267 (892)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~ 267 (892)
-+-+|.++.-..-.. .-.+-+.+++++| +|.||+|..
T Consensus 567 -SrLIGaPPGYVGyee----GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 567 -SRLIGAPPGYVGYEE----GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred -HHHhCCCCCCceecc----ccchhHhhhcCCCeEEEechhhh
Confidence 222343332111111 2235556677888 888999964
No 203
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.93 E-value=0.0053 Score=74.03 Aligned_cols=168 Identities=14% Similarity=0.139 Sum_probs=90.2
Q ss_pred ccchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHH
Q 002691 158 VVGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEK 221 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (892)
+.|.+..++++.+.+. .+-|.++|++|+||||||+.+++.. ...| +.++.. .
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~-----i~i~~~----~ 247 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF-----ISINGP----E 247 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE-----EEEecH----H
Confidence 6799999988877764 3568899999999999999999986 2222 222211 1
Q ss_pred HHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccccc-------------ccccccccCCCCCCCcEE
Q 002691 222 IQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERVD-------------LTKVGVPVPNSRNVASKV 288 (892)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~gs~I 288 (892)
+ .... ...........+.....+.+.+|++|+++.... ...+...+......+..+
T Consensus 248 i----~~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 248 I----MSKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred H----hccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 1 1110 111122222333333445678999999854210 111111111111233344
Q ss_pred EE-Eecchh-hcccc----cccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchh
Q 002691 289 VF-TTRLLD-VCGLM----EAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPL 352 (892)
Q Consensus 289 ii-TTR~~~-v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 352 (892)
+| ||.... +...+ .....+.+...+.++-.+++...........+ .....+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCH
Confidence 44 454332 21111 12346778888888888888865433221111 124567777777653
No 204
>PRK06921 hypothetical protein; Provisional
Probab=96.93 E-value=0.00063 Score=70.59 Aligned_cols=38 Identities=32% Similarity=0.340 Sum_probs=28.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVV 213 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 213 (892)
...+.++|..|+|||+||.++++... ......++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 35799999999999999999999872 221345667664
No 205
>PRK10536 hypothetical protein; Provisional
Probab=96.92 E-value=0.0041 Score=62.77 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=34.9
Q ss_pred ccchHHHHHHHHHhhc-ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT-AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+.++......++.++. ..++.+.|..|+|||+||.+++.+.
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5677777778888777 7799999999999999999988863
No 206
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.029 Score=59.47 Aligned_cols=91 Identities=10% Similarity=0.051 Sum_probs=56.3
Q ss_pred cCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEecch-hhccc-ccccceEEccCCChHHHHHHHHHHhCCccc
Q 002691 255 KKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTRLL-DVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETL 330 (892)
Q Consensus 255 ~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 330 (892)
+++-++|+|+++.. .....+...+-.- ..++.+|++|.+. .+... .+....+.+.+++.+++.+.+....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----- 180 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEP-APNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----- 180 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC-----
Confidence 45568999999753 2233333333222 4456666666554 44332 2334578999999999998886531
Q ss_pred CCCCChHHHHHHHHHHhCCchhHHHHH
Q 002691 331 NYHHDIPELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 331 ~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (892)
.+ .+..+++.++|.|+.+..+
T Consensus 181 -~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 181 -IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 11 1356788999999976654
No 207
>PRK06526 transposase; Provisional
Probab=96.90 E-value=0.00092 Score=68.71 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..-+.++|++|+|||+||..+.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4678999999999999999998876
No 208
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.89 E-value=0.015 Score=70.31 Aligned_cols=167 Identities=16% Similarity=0.154 Sum_probs=91.8
Q ss_pred ccchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHH
Q 002691 158 VVGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEK 221 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (892)
+.|.+..++++.+.+. .+-|.++|++|+|||++|+++++.. ...| +.++.. +
T Consensus 455 i~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~----~ 522 (733)
T TIGR01243 455 IGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP----E 522 (733)
T ss_pred cccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH----H
Confidence 6788888877776653 3457899999999999999999986 2233 222211 1
Q ss_pred HHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccccc--------c------ccccccccCCC-CCCCc
Q 002691 222 IQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV--------D------LTKVGVPVPNS-RNVAS 286 (892)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~------~~~~~~~l~~~-~~~gs 286 (892)
+.... ...+.......+...-...+.+|++|+++.-. . ...+...+..- ...+-
T Consensus 523 ----l~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 523 ----ILSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ----Hhhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11111 11122222222223334567999999996321 0 01111111110 02344
Q ss_pred EEEEEecchhhccc-----ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCch
Q 002691 287 KVVFTTRLLDVCGL-----MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLP 351 (892)
Q Consensus 287 ~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 351 (892)
-||.||..++.... -.....+.++..+.++-.++|+.+..........++ ..+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 55667765544221 123457888999999999999876543322222233 44666677653
No 209
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.022 Score=61.16 Aligned_cols=173 Identities=9% Similarity=0.011 Sum_probs=90.0
Q ss_pred HHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCC-C--CCcE----EEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 165 LEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRP-Y--GFDF----VIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 165 ~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~--~f~~----~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
-+++.+.+. ..-+-+.|+.|+||+|+|..++....-.. . .-+. +-++.....+|+..+. +
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~---------p 81 (334)
T PRK07993 11 YEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT---------P 81 (334)
T ss_pred HHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe---------c
Confidence 344555544 45778999999999999998877652110 0 0000 0011111111111000 0
Q ss_pred CCcccCCChHHHHHHHHHHh-----ccCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEecch-hhccc-cccc
Q 002691 234 DGLWKNRSREEKALDIFKVL-----SKKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTRLL-DVCGL-MEAH 304 (892)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR~~-~v~~~-~~~~ 304 (892)
...-..-. .+.++.+.+.+ .+++-++|+|+++.. .....+...+-.- ..++.+|++|.+. .+... .+..
T Consensus 82 ~~~~~~I~-idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 82 EKGKSSLG-VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP-PENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred ccccccCC-HHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC-CCCeEEEEEECChhhChHHHHhcc
Confidence 00000011 12222333333 356779999999753 2223333223222 4456666666654 34432 2334
Q ss_pred ceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 305 KKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 305 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
..+.+.+++.+++.+.+....+. + .+.+..++..++|.|..+..
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~~~-------~-~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREVTM-------S-QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred ccccCCCCCHHHHHHHHHHccCC-------C-HHHHHHHHHHcCCCHHHHHH
Confidence 57899999999998877654211 1 23467789999999975443
No 210
>PRK08181 transposase; Validated
Probab=96.87 E-value=0.0014 Score=67.68 Aligned_cols=76 Identities=22% Similarity=0.213 Sum_probs=45.8
Q ss_pred Hhhc-ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHH
Q 002691 170 SCLT-AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALD 248 (892)
Q Consensus 170 ~~l~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 248 (892)
+|+. ..-+.++|++|+|||.||.++.+... .....++|+++ .++...+..... ..+....
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~------~~L~~~l~~a~~-------~~~~~~~--- 161 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRT------TDLVQKLQVARR-------ELQLESA--- 161 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeH------HHHHHHHHHHHh-------CCcHHHH---
Confidence 3444 56799999999999999999998762 22334556543 445555533211 1122222
Q ss_pred HHHHhccCcEEEEEeccc
Q 002691 249 IFKVLSKKKFVLLLDDLW 266 (892)
Q Consensus 249 l~~~l~~kr~LlVlDdv~ 266 (892)
.+.+. +-=|||+||+.
T Consensus 162 -l~~l~-~~dLLIIDDlg 177 (269)
T PRK08181 162 -IAKLD-KFDLLILDDLA 177 (269)
T ss_pred -HHHHh-cCCEEEEeccc
Confidence 22222 34599999995
No 211
>PRK09183 transposase/IS protein; Provisional
Probab=96.85 E-value=0.0017 Score=67.14 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
...+.|+|++|+|||+||..+++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998775
No 212
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.78 E-value=0.014 Score=65.77 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=79.5
Q ss_pred ccchHHHHHHHHHhhc-------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHH
Q 002691 158 VVGLQSILEQVWSCLT-------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQE 224 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (892)
+.|.+..++.+..... .+-|-++|++|+|||.+|+++++.. ...| +-++.+ .+
T Consensus 230 vgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l-- 295 (489)
T CHL00195 230 IGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL-- 295 (489)
T ss_pred hcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh--
Confidence 5687776666554321 4568899999999999999999987 2222 112211 11
Q ss_pred HHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccccc----cc----------cccccccCCCCCCCcEEEE
Q 002691 225 TIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV----DL----------TKVGVPVPNSRNVASKVVF 290 (892)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----~~----------~~~~~~l~~~~~~gs~Iii 290 (892)
.... ...+.......+...-...+++|++|+++... .. ..+...+... ..+--||.
T Consensus 296 --~~~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-~~~V~vIa 365 (489)
T CHL00195 296 --FGGI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-KSPVFVVA 365 (489)
T ss_pred --cccc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-CCceEEEE
Confidence 1110 11112222222222223578999999997421 00 0011111111 23344555
Q ss_pred Eecchhhc-----ccccccceEEccCCChHHHHHHHHHHhCC
Q 002691 291 TTRLLDVC-----GLMEAHKKFKVECLSDEDAWQLFREKVGE 327 (892)
Q Consensus 291 TTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 327 (892)
||...+.. +....+..+.++.-+.++-.++|+.+...
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 77654321 11123457788888999999999887654
No 213
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.77 E-value=0.0011 Score=60.12 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 214
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.016 Score=64.93 Aligned_cols=159 Identities=19% Similarity=0.206 Sum_probs=88.6
Q ss_pred cchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHH
Q 002691 159 VGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKI 222 (892)
Q Consensus 159 vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (892)
=|.++.+.++.+.+. .+-|-.+|+||.|||++|+++++.. ...| ++++.. +
T Consensus 437 GGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp----E- 503 (693)
T KOG0730|consen 437 GGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP----E- 503 (693)
T ss_pred cCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----H-
Confidence 358877777776655 4678899999999999999999987 4444 223221 1
Q ss_pred HHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccccc-------------ccccccccCCCCCCCcEEE
Q 002691 223 QETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERVD-------------LTKVGVPVPNSRNVASKVV 289 (892)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~gs~Ii 289 (892)
+.... -..++..+.+.+++.=+.-+.+|.||.++...- +..+...+ ++......|+
T Consensus 504 ---L~sk~-------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEm-DG~e~~k~V~ 572 (693)
T KOG0730|consen 504 ---LFSKY-------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEM-DGLEALKNVL 572 (693)
T ss_pred ---HHHHh-------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHc-ccccccCcEE
Confidence 11111 122233333333333344678999999864210 11111111 2212222333
Q ss_pred E---Eecchhhc-cccc---ccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHH
Q 002691 290 F---TTRLLDVC-GLME---AHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQ 341 (892)
Q Consensus 290 i---TTR~~~v~-~~~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~ 341 (892)
| |-|...+- ..+. .++.+.++.-+.+--.++|+.++..-.....-++++++.
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 3 33333331 1122 355677777777788889999887655444455666654
No 215
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.75 E-value=0.0002 Score=82.72 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=23.3
Q ss_pred cCcccEeecCcccccccccCCCC--CCCCccEEeeccccccCCC
Q 002691 809 FAKLQHLELVCLRNLNSIYWKPL--PFSQLKEMLVDDCYFLKKL 850 (892)
Q Consensus 809 ~~~L~~L~L~~~~~L~~i~~~~~--~~~~L~~L~i~~C~~L~~l 850 (892)
+.+|+.|.+..|...+.-..... .+.++..+.+.+|+....-
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 33477777777765554322111 1456666666666655543
No 216
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.73 E-value=0.0045 Score=60.97 Aligned_cols=89 Identities=21% Similarity=0.193 Sum_probs=53.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-ccCHHHHHHHHHHhcCCCCCcc-cCCChHHHHHHHHHH
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSK-DLQLEKIQETIGKKIGLFDGLW-KNRSREEKALDIFKV 252 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~ 252 (892)
++|.++|+.|+||||.+.+++.... .+ -..+..++... .....+-++..++.++.+-... ...+..+......+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~-~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLK-LK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH-HT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHh-hc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 6899999999999999998888872 22 45577777643 2345566777788877542111 122344444433444
Q ss_pred hccCc-EEEEEeccc
Q 002691 253 LSKKK-FVLLLDDLW 266 (892)
Q Consensus 253 l~~kr-~LlVlDdv~ 266 (892)
.+.++ =+|++|=.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 44443 377777763
No 217
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.04 Score=61.56 Aligned_cols=88 Identities=23% Similarity=0.237 Sum_probs=46.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-ccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSK-DLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKV 252 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (892)
..+|+|+|.+|+||||++..++.... .......+..++... .....+.++.....++.... ...+..++...+. .
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~-~ 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE-R 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-H
Confidence 47899999999999999999887752 222233455555422 11122233333333433221 1222333333333 3
Q ss_pred hccCcEEEEEeccc
Q 002691 253 LSKKKFVLLLDDLW 266 (892)
Q Consensus 253 l~~kr~LlVlDdv~ 266 (892)
+. ..=+||+|..-
T Consensus 426 l~-~~DLVLIDTaG 438 (559)
T PRK12727 426 LR-DYKLVLIDTAG 438 (559)
T ss_pred hc-cCCEEEecCCC
Confidence 33 34578888874
No 218
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.69 E-value=0.055 Score=61.25 Aligned_cols=195 Identities=15% Similarity=0.102 Sum_probs=113.7
Q ss_pred ccchHHHHHHHHHhhc--------ccEEEEEcCCCCcHHHHHHHHHhhcc-----CCCCCCcEEEEEEeCCccCHHHHHH
Q 002691 158 VVGLQSILEQVWSCLT--------AGIIGLYGMGGVGKTTLLTLLNNKFL-----NRPYGFDFVIWVVVSKDLQLEKIQE 224 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~--------~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (892)
+-+||.+..+|...+. -+.+-|.|-+|+|||..+..|.+... +.-..|+. +.|..-.-....+++.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIYE 476 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHHH
Confidence 5689999999998887 34899999999999999999988541 11223432 3343333446889999
Q ss_pred HHHHhcCCCCCcccCCChHHHHHHHHHHhc-----cCcEEEEEeccccccc-ccccccccCCC-CCCCcEEEEEecc--h
Q 002691 225 TIGKKIGLFDGLWKNRSREEKALDIFKVLS-----KKKFVLLLDDLWERVD-LTKVGVPVPNS-RNVASKVVFTTRL--L 295 (892)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~-~~~~~~~l~~~-~~~gs~IiiTTR~--~ 295 (892)
.|..++.+.. .......+.+..++. .+..++++|+++.-.. -+++...+.+| ..++||++|-+=. .
T Consensus 477 ~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 477 KIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 9999997643 233444455555543 4678999999864211 11111111111 1356776664321 0
Q ss_pred ---------hhcccccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHH
Q 002691 296 ---------DVCGLMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGR 359 (892)
Q Consensus 296 ---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 359 (892)
.|+..++ ...+...|-+.++-.+....+..+...-.....+=++++|+...|-.-.|+.+.-+
T Consensus 552 dlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred cCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 1111111 23466777777777777766654332111223344556666666665555555443
No 219
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.65 E-value=0.0039 Score=61.19 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=60.2
Q ss_pred HHHHHHHHhhc-ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc------cCHHH-------HHHHHHH
Q 002691 163 SILEQVWSCLT-AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD------LQLEK-------IQETIGK 228 (892)
Q Consensus 163 ~~~~~l~~~l~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~------~~~~~-------~~~~i~~ 228 (892)
.+-...++.+. ..++.+.|+.|.|||.||.+.+-+. -..+.|+.++++.-.-. |-+-+ ....+..
T Consensus 7 ~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d 85 (205)
T PF02562_consen 7 EEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYD 85 (205)
T ss_dssp HHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTTHHHHH
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 33444555555 8899999999999999999888665 23478888888752211 00001 1112222
Q ss_pred hcCCCCCcccCCChHHHHHHH------HHHhccC---cEEEEEecccc--cccccccccccCCCCCCCcEEEEEecc
Q 002691 229 KIGLFDGLWKNRSREEKALDI------FKVLSKK---KFVLLLDDLWE--RVDLTKVGVPVPNSRNVASKVVFTTRL 294 (892)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l------~~~l~~k---r~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~IiiTTR~ 294 (892)
.+..-- .....+.....- ..+++|+ ..+||+|++.+ +.++..+... . +.|||||++--.
T Consensus 86 ~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~-g~~skii~~GD~ 155 (205)
T PF02562_consen 86 ALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---I-GEGSKIIITGDP 155 (205)
T ss_dssp HHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B--TT-EEEEEE--
T ss_pred HHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---c-CCCcEEEEecCc
Confidence 221110 111111111100 1234553 46999999965 3455555333 2 678999998654
No 220
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.061 Score=57.68 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=55.4
Q ss_pred cCcEEEEEeccccc--ccccccccccCCCCCCCcEEEEEecc-hhhccc-ccccceEEccCCChHHHHHHHHHHhCCccc
Q 002691 255 KKKFVLLLDDLWER--VDLTKVGVPVPNSRNVASKVVFTTRL-LDVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETL 330 (892)
Q Consensus 255 ~kr~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 330 (892)
+++-++|+|+++.. .....+...+-.- ..++.+|++|.+ ..+... .+....+.+.+++.++..+.+... +
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~---- 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEP-PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-G---- 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCC-CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-C----
Confidence 45568899999753 2333333333222 455666655554 444422 233467899999999999888764 1
Q ss_pred CCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002691 331 NYHHDIPELAQMVAKECGGLPLALITIG 358 (892)
Q Consensus 331 ~~~~~~~~~~~~i~~~c~glPLai~~~g 358 (892)
.+ + ...++..++|.|..+..+.
T Consensus 205 -~~-~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 205 -VA-D----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -CC-h----HHHHHHHcCCCHHHHHHHH
Confidence 11 1 2235778899997655443
No 221
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.00076 Score=66.86 Aligned_cols=106 Identities=27% Similarity=0.295 Sum_probs=64.4
Q ss_pred CCCCcccEEEecCCccccccchhhcCCCCCcEEEecCc--ccc-ccChhhcCcCcCCEEeccCCCccccc--hhhhcCCC
Q 002691 535 PRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHI--QLT-ELPSRISKLVSLQHLDLSHTRIKELP--GELEILVN 609 (892)
Q Consensus 535 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~--~l~-~lp~~i~~L~~L~~L~l~~~~i~~lp--~~i~~l~~ 609 (892)
..+..|..|.+.++.++.+.. |..|++|+.|.++.| .+. .++-...++++|++|++++|+|+.+. ..+..+.|
T Consensus 40 d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 344555666666665544433 556777888888877 333 35555556688888888888766421 23566777
Q ss_pred CCEEecCCCcCcc--ccchhhhcCCCcccEEEeec
Q 002691 610 LKCLNLNHTMYLS--VIPRQLISKFSMLHVLRMFS 642 (892)
Q Consensus 610 L~~L~l~~~~~l~--~~p~~~i~~l~~L~~L~l~~ 642 (892)
|..|++.+|.... .--..++.-+++|..|+...
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 8888888775322 11123455667777776553
No 222
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.62 E-value=0.0027 Score=67.46 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=38.2
Q ss_pred ccchHHHHHHHHHhhc---------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT---------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|.++.++++++++. .+++.++|++|+||||||+.+++..
T Consensus 53 ~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999987 4789999999999999999999887
No 223
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.59 E-value=0.0015 Score=63.40 Aligned_cols=73 Identities=29% Similarity=0.407 Sum_probs=42.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
..-+.++|..|+|||.||.++.+.... .. ..+.|++ ..+++..+-..- .....+. +.+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~--~g-~~v~f~~------~~~L~~~l~~~~-------~~~~~~~----~~~~l 106 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR--KG-YSVLFIT------ASDLLDELKQSR-------SDGSYEE----LLKRL 106 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH--TT---EEEEE------HHHHHHHHHCCH-------CCTTHCH----HHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc--CC-cceeEee------cCceeccccccc-------cccchhh----hcCcc
Confidence 567999999999999999999988732 22 3456664 344555553321 1112222 22333
Q ss_pred ccCcEEEEEecccc
Q 002691 254 SKKKFVLLLDDLWE 267 (892)
Q Consensus 254 ~~kr~LlVlDdv~~ 267 (892)
. +-=||||||+-.
T Consensus 107 ~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 107 K-RVDLLILDDLGY 119 (178)
T ss_dssp H-TSSCEEEETCTS
T ss_pred c-cccEecccccce
Confidence 3 335778999953
No 224
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.59 E-value=0.044 Score=59.19 Aligned_cols=197 Identities=18% Similarity=0.192 Sum_probs=120.0
Q ss_pred hHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHH-HHHHhhccCCCCCCcEEEEEEeCCc---cCHHHHHHHHHHhcCCC
Q 002691 161 LQSILEQVWSCLT---AGIIGLYGMGGVGKTTLL-TLLNNKFLNRPYGFDFVIWVVVSKD---LQLEKIQETIGKKIGLF 233 (892)
Q Consensus 161 r~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~vs~~---~~~~~~~~~i~~~l~~~ 233 (892)
|.+.+++|..||. ...|.|.|+-|+||+.|+ .++.++. ..+..+++.+- .+-....+.++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5567899999999 789999999999999999 6666553 11566654332 23344555555554421
Q ss_pred -----------------------CCcccCCChHHHHHHHH---HHhc--------------------------cCcEEEE
Q 002691 234 -----------------------DGLWKNRSREEKALDIF---KVLS--------------------------KKKFVLL 261 (892)
Q Consensus 234 -----------------------~~~~~~~~~~~~~~~l~---~~l~--------------------------~kr~LlV 261 (892)
...+......++...+. ..|+ .+|-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 11111222222222211 0111 1266899
Q ss_pred Eecccccc-----------cccccccccCCCCCCCcEEEEEecchhhccc----c--cccceEEccCCChHHHHHHHHHH
Q 002691 262 LDDLWERV-----------DLTKVGVPVPNSRNVASKVVFTTRLLDVCGL----M--EAHKKFKVECLSDEDAWQLFREK 324 (892)
Q Consensus 262 lDdv~~~~-----------~~~~~~~~l~~~~~~gs~IiiTTR~~~v~~~----~--~~~~~~~l~~L~~~ea~~Lf~~~ 324 (892)
+||.-... +|..... . ++-.+||++|-+...... + ...+.+.|...+.+.|.++...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv---~--~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLV---Q--NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHH---h--cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 99985421 2333221 1 355689998887655432 2 23456789999999999999988
Q ss_pred hCCcccC------------CC-----CChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHH
Q 002691 325 VGEETLN------------YH-----HDIPELAQMVAKECGGLPLALITIGRAMAYKTTPEE 369 (892)
Q Consensus 325 a~~~~~~------------~~-----~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~ 369 (892)
....... .. .....-....++..||=-.-+..+++.++...++.+
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 7543100 00 123344456778899999999999999988766543
No 225
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.57 E-value=0.0041 Score=75.38 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=36.1
Q ss_pred ccchHHHHHHHHHhhc------------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT------------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~------------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|.+..++.+.+.+. ..++.++|+.|+|||.+|+.++...
T Consensus 568 v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999988875 3478999999999999999998876
No 226
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.55 E-value=0.006 Score=62.15 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=36.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQ 223 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 223 (892)
-.++.|+|.+|+|||++|.+++.... .....++|++.. .++.+.+.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH
Confidence 57999999999999999999988762 234678999887 55555543
No 227
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.52 E-value=0.019 Score=59.02 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=95.3
Q ss_pred ccchHHHHHHHHHhhc-------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHH-HHHHHHHHh
Q 002691 158 VVGLQSILEQVWSCLT-------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLE-KIQETIGKK 229 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~-~~~~~i~~~ 229 (892)
++|-.++..++..++. ..-+.|+|+.|.|||+|......+..+.. +..+-|........+ -.++.|..+
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~---E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENG---ENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcC---CeEEEEEECccchhhHHHHHHHHHH
Confidence 7899998889888887 45678999999999999988777742233 344555555544332 234455554
Q ss_pred cCCCCC--cccCCChHHHHHHHHHHhc------cCcEEEEEecccccc----c--ccccccccCCCCCCCcEEEEEecch
Q 002691 230 IGLFDG--LWKNRSREEKALDIFKVLS------KKKFVLLLDDLWERV----D--LTKVGVPVPNSRNVASKVVFTTRLL 295 (892)
Q Consensus 230 l~~~~~--~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~----~--~~~~~~~l~~~~~~gs~IiiTTR~~ 295 (892)
+..... .....+..+....+-+.|+ +-++++|+|.++--. + +..+...-.....+-+-|-+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 432110 1123344444555555554 246899998886321 0 1111111111114556677899953
Q ss_pred h-------hcccccccceEEccCCChHHHHHHHHHHh
Q 002691 296 D-------VCGLMEAHKKFKVECLSDEDAWQLFREKV 325 (892)
Q Consensus 296 ~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 325 (892)
- |-..+.-..++-++.++-++...++++..
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 2 22233333355677777788888887765
No 228
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.056 Score=53.31 Aligned_cols=51 Identities=25% Similarity=0.411 Sum_probs=40.8
Q ss_pred cccccCCCCc--ccchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 148 VADERPTEPL--VVGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 148 ~~~~~~~~~~--~vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.++++|+..+ +=|.+..++++++.+. .+-+..+|++|.|||-+|++.+...
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 4577777553 4579999999998876 4467899999999999999887764
No 229
>PRK04296 thymidine kinase; Provisional
Probab=96.51 E-value=0.0029 Score=62.30 Aligned_cols=113 Identities=15% Similarity=0.032 Sum_probs=62.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLS 254 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (892)
.++.|+|..|.||||+|..++.+.. .+...++.+. ..++.+.....+++.++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4678999999999999999988872 2223344342 1112222233455665543221112234445555544 23
Q ss_pred cCcEEEEEecccc--cccccccccccCCCCCCCcEEEEEecchh
Q 002691 255 KKKFVLLLDDLWE--RVDLTKVGVPVPNSRNVASKVVFTTRLLD 296 (892)
Q Consensus 255 ~kr~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~IiiTTR~~~ 296 (892)
++.-+||+|.+.- .++..++...+. ..|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~---~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD---DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH---HcCCeEEEEecCcc
Confidence 3445999999842 121222222211 45788999998754
No 230
>PRK04132 replication factor C small subunit; Provisional
Probab=96.47 E-value=0.038 Score=65.88 Aligned_cols=153 Identities=14% Similarity=0.045 Sum_probs=90.8
Q ss_pred CCCCcHHHHHHHHHhhccCCCCCC-cEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEE
Q 002691 182 MGGVGKTTLLTLLNNKFLNRPYGF-DFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVL 260 (892)
Q Consensus 182 ~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 260 (892)
+.++||||+|.+++++. -. +.+ ..++-++.|+..++..+.+.+-....... . -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l-~g-~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~---~--------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FG-ENWRHNFLELNASDERGINVIREKVKEFARTKP---I--------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhh-hc-ccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC---c--------------CCCCCEEE
Confidence 77999999999999986 11 222 24677777776566544433322111100 0 01245799
Q ss_pred EEecccccc--cccccccccCCCCCCCcEEEEEecch-hhccc-ccccceEEccCCChHHHHHHHHHHhCCcccCCCCCh
Q 002691 261 LLDDLWERV--DLTKVGVPVPNSRNVASKVVFTTRLL-DVCGL-MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDI 336 (892)
Q Consensus 261 VlDdv~~~~--~~~~~~~~l~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 336 (892)
|+|+++... ....+...+-.. ....++|.+|.+. .+... .+....+.+.+++.++....+...+....... .
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep-~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---~ 710 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMF-SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---T 710 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCC-CCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC---C
Confidence 999997532 333443333322 3456666655543 33322 22345789999999998888877654322111 2
Q ss_pred HHHHHHHHHHhCCchhHHHHH
Q 002691 337 PELAQMVAKECGGLPLALITI 357 (892)
Q Consensus 337 ~~~~~~i~~~c~glPLai~~~ 357 (892)
.+....|++.++|-+..+..+
T Consensus 711 ~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 467788999999988555443
No 231
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.031 Score=64.77 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=100.3
Q ss_pred ccchHHHHHHHHHhhc---------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHH
Q 002691 158 VVGLQSILEQVWSCLT---------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKI 222 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (892)
+.|-|+.+++|.+... .+=+-++|++|+|||-||++++... .+ . |+++|..
T Consensus 313 VAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-gV--P-----F~svSGS------ 378 (774)
T KOG0731|consen 313 VAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GV--P-----FFSVSGS------ 378 (774)
T ss_pred ccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-CC--c-----eeeechH------
Confidence 5787776666665544 5668899999999999999999886 22 2 3444432
Q ss_pred HHHHHHhcCCCCCcccCCChHHHHHHHHHHh-ccCcEEEEEecccccc-----------------cccccccccCCCCCC
Q 002691 223 QETIGKKIGLFDGLWKNRSREEKALDIFKVL-SKKKFVLLLDDLWERV-----------------DLTKVGVPVPNSRNV 284 (892)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-----------------~~~~~~~~l~~~~~~ 284 (892)
+..+.+.. .. ..+...+.+.- .+.+..|.+|+++... .+.++.... +++..
T Consensus 379 --EFvE~~~g-------~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~em-Dgf~~ 447 (774)
T KOG0731|consen 379 --EFVEMFVG-------VG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEM-DGFET 447 (774)
T ss_pred --HHHHHhcc-------cc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHh-cCCcC
Confidence 11111111 00 22333333333 3567899999886421 122222111 22222
Q ss_pred Cc--EEEEEecchhhccc-----ccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHH
Q 002691 285 AS--KVVFTTRLLDVCGL-----MEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALI 355 (892)
Q Consensus 285 gs--~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (892)
+. -++-+|+..++... -.-++.+.++.-+.....++|.-++..... ..+..++++ |+...-|.+=|..
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~--~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL--DDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC--CcchhhHHH-HHhcCCCCcHHHH
Confidence 23 33346766666321 123567888888888999999998865442 245567777 8888888875543
No 232
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.47 E-value=0.011 Score=59.45 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=36.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQE 224 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (892)
-+++.|+|.+|+|||++|..++.... .....++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH
Confidence 46899999999999999999887762 2346889999876 66655544
No 233
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.47 E-value=0.013 Score=70.59 Aligned_cols=41 Identities=27% Similarity=0.432 Sum_probs=34.5
Q ss_pred ccchHHHHHHHHHhhc------------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT------------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~------------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|.+..++.+.+.+. ..++.++|+.|+|||+||+.++...
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 6788888888877766 2357899999999999999999876
No 234
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.44 E-value=0.0069 Score=63.96 Aligned_cols=85 Identities=16% Similarity=0.109 Sum_probs=56.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCc---ccCCChHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGL---WKNRSREEKALDIF 250 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 250 (892)
-+++-|+|.+|+||||||.++..... ..-..++||+....++.. .+++++...+. .+..+.++....+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 67999999999999999998877662 224567899877666553 34445443211 12334555555555
Q ss_pred HHhc-cCcEEEEEeccc
Q 002691 251 KVLS-KKKFVLLLDDLW 266 (892)
Q Consensus 251 ~~l~-~kr~LlVlDdv~ 266 (892)
..++ +..-+||+|-|-
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 5554 456699999984
No 235
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.014 Score=65.33 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=102.0
Q ss_pred ccchHHHHHHHHHhhc----ccEEEEEcCCCCcHHHHHHHHHhhccCCC---CCCcEEEEEEeCCccCHHHHHHHHHHhc
Q 002691 158 VVGLQSILEQVWSCLT----AGIIGLYGMGGVGKTTLLTLLNNKFLNRP---YGFDFVIWVVVSKDLQLEKIQETIGKKI 230 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l 230 (892)
+||-+.....+.+.+. ..-....|+-|+||||+|+.++....... ..++..+- .-+.|...-
T Consensus 18 vvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~-----------~Ck~I~~g~ 86 (515)
T COG2812 18 VVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI-----------SCKEINEGS 86 (515)
T ss_pred hcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh-----------hhHhhhcCC
Confidence 7999999999999888 44567899999999999999887652111 12222222 223332220
Q ss_pred CCCCCcc--cCCChHHHHHHHHHHh-----ccCcEEEEEeccc--ccccccccccccCCCCCCCcEEEEEec-chhhc-c
Q 002691 231 GLFDGLW--KNRSREEKALDIFKVL-----SKKKFVLLLDDLW--ERVDLTKVGVPVPNSRNVASKVVFTTR-LLDVC-G 299 (892)
Q Consensus 231 ~~~~~~~--~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~--~~~~~~~~~~~l~~~~~~gs~IiiTTR-~~~v~-~ 299 (892)
....-.+ ...+.-+..+.+.+.. +++-=+.|+|.|. +...|..+...+-.- ...-+.|..|. -..+. .
T Consensus 87 ~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-P~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 87 LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-PSHVKFILATTEPQKIPNT 165 (515)
T ss_pred cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC-ccCeEEEEecCCcCcCchh
Confidence 0000000 0111122233333333 3455589999994 233444444333222 23345555444 44442 3
Q ss_pred cccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchh
Q 002691 300 LMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPL 352 (892)
Q Consensus 300 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 352 (892)
..+..+.|.++.++.++-...+...+..+.+.. .++....|++..+|..-
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~---e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI---EEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCcc---CHHHHHHHHHHcCCChh
Confidence 334457899999999998888888776554332 24556667777777543
No 236
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.41 E-value=0.0071 Score=63.91 Aligned_cols=85 Identities=19% Similarity=0.097 Sum_probs=56.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCc---ccCCChHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGL---WKNRSREEKALDIF 250 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 250 (892)
-+++-|+|++|+||||||.+++.... ..-..++||+....++.. .+++++...+. .+..+.++....+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 67899999999999999999877652 234568899887776653 34444432211 12334555555555
Q ss_pred HHhc-cCcEEEEEeccc
Q 002691 251 KVLS-KKKFVLLLDDLW 266 (892)
Q Consensus 251 ~~l~-~kr~LlVlDdv~ 266 (892)
..++ +.--+||+|-|-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 5554 356689999984
No 237
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.41 E-value=0.0032 Score=58.63 Aligned_cols=43 Identities=33% Similarity=0.298 Sum_probs=33.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHH
Q 002691 177 IGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQET 225 (892)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (892)
|.++|.+|+|||+||+.+++.. . ....-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEeccccccccceee
Confidence 6799999999999999999987 1 23445678888888777643
No 238
>PRK06762 hypothetical protein; Provisional
Probab=96.40 E-value=0.026 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|.|+|++|+||||+|+.+....
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999886
No 239
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.40 E-value=0.018 Score=58.65 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=55.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCC---CCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCC-------cccCCChH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRP---YGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDG-------LWKNRSRE 243 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~ 243 (892)
-.++.|+|.+|+|||+||..++....... ..-..++|++....++...+.+ +.+..+.... -....+.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCCCHH
Confidence 67999999999999999999877651110 0115689999888777655543 3333221100 01223445
Q ss_pred HHHHHHHHHhc----cCcEEEEEeccc
Q 002691 244 EKALDIFKVLS----KKKFVLLLDDLW 266 (892)
Q Consensus 244 ~~~~~l~~~l~----~kr~LlVlDdv~ 266 (892)
+....+.+... .+.-+||+|.+.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 55555554432 244588999874
No 240
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.45 Score=51.64 Aligned_cols=151 Identities=16% Similarity=0.129 Sum_probs=80.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
.|=--++|++|.|||+++.+++|.. .|+.. -+..+..-+-.+ ++..|
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L-----~ydIy-dLeLt~v~~n~d---------------------------Lr~LL 281 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL-----NYDIY-DLELTEVKLDSD---------------------------LRHLL 281 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc-----CCceE-EeeeccccCcHH---------------------------HHHHH
Confidence 4456799999999999999999987 24321 122222111111 33333
Q ss_pred c--cCcEEEEEeccccccc-----------ccc---------ccc---ccCCCCCCCcEEEE-Eecchhhc-----cccc
Q 002691 254 S--KKKFVLLLDDLWERVD-----------LTK---------VGV---PVPNSRNVASKVVF-TTRLLDVC-----GLME 302 (892)
Q Consensus 254 ~--~kr~LlVlDdv~~~~~-----------~~~---------~~~---~l~~~~~~gs~Iii-TTR~~~v~-----~~~~ 302 (892)
. ..|-+||+.|++-..+ ... +.. .+...++ +=|||| ||...+-. +.-.
T Consensus 282 ~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg-~ERIivFTTNh~EkLDPALlRpGR 360 (457)
T KOG0743|consen 282 LATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG-DERIIVFTTNHKEKLDPALLRPGR 360 (457)
T ss_pred HhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC-CceEEEEecCChhhcCHhhcCCCc
Confidence 2 3567788888863211 110 111 1111112 346665 66644321 2112
Q ss_pred ccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHH-HHhcC
Q 002691 303 AHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGR-AMAYK 364 (892)
Q Consensus 303 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~-~l~~~ 364 (892)
.+..+.|.-=+.+....||....+.+. . ..+..+|.+.-.|.-+.=..++. +|.++
T Consensus 361 mDmhI~mgyCtf~~fK~La~nYL~~~~--~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 361 MDMHIYMGYCTFEAFKTLASNYLGIEE--D----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred ceeEEEcCCCCHHHHHHHHHHhcCCCC--C----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 344678888899999999988876533 1 23455555545554433344444 44443
No 241
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.37 E-value=0.012 Score=71.88 Aligned_cols=41 Identities=34% Similarity=0.439 Sum_probs=35.8
Q ss_pred ccchHHHHHHHHHhhc------------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT------------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~------------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|.+..++.+...+. ..++.++|+.|+|||++|+.++...
T Consensus 567 v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 567 VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999988886 1368899999999999999999876
No 242
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.37 E-value=0.0097 Score=61.12 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=37.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCcEEEEEEeCCccCHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPY----GFDFVIWVVVSKDLQLEKIQE 224 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~ 224 (892)
-.++.|+|.+|+||||||.+++-.. .... ....++|++....++.+.+.+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 5789999999999999999997553 1111 136899999888777655443
No 243
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.36 E-value=0.022 Score=69.45 Aligned_cols=41 Identities=34% Similarity=0.456 Sum_probs=35.3
Q ss_pred ccchHHHHHHHHHhhc------------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT------------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~------------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|.+..++.+...+. ..++.++|+.|+|||++|+.+++..
T Consensus 570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 7899998888888776 1478899999999999999999876
No 244
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.35 E-value=0.0067 Score=58.74 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+||-++.++++.-... .+-+.|.||+|+||||-+..+++..
T Consensus 29 IVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 29 IVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred hhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 8999998888766665 7889999999999999999999887
No 245
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.32 E-value=0.011 Score=55.53 Aligned_cols=117 Identities=21% Similarity=0.123 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEE---eCCccCHHHHHHHHHHhcCC----CCCcccCCChHH---
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVV---VSKDLQLEKIQETIGKKIGL----FDGLWKNRSREE--- 244 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---vs~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~~--- 244 (892)
..|-|++..|.||||+|..++-+.. .+-..+.++. -.....-...++.+- .+.. ....+...+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~---~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL---GHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 4678899999999999998887762 2222344433 222334444444431 1100 000011111222
Q ss_pred ----HHHHHHHHhccCc-EEEEEeccccc-----ccccccccccCCCCCCCcEEEEEecchh
Q 002691 245 ----KALDIFKVLSKKK-FVLLLDDLWER-----VDLTKVGVPVPNSRNVASKVVFTTRLLD 296 (892)
Q Consensus 245 ----~~~~l~~~l~~kr-~LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~IiiTTR~~~ 296 (892)
.....++.++... =|||||++-.. .+.+.+...+... ..+.-||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r-p~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK-PEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC-CCCCEEEEECCCCC
Confidence 1222334444444 49999998542 2233333334333 45678999999754
No 246
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.32 E-value=0.09 Score=58.40 Aligned_cols=88 Identities=25% Similarity=0.188 Sum_probs=50.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc-cCHHHHHHHHHHhcCCCCCcc-cCCChHHHHHHHHHH
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD-LQLEKIQETIGKKIGLFDGLW-KNRSREEKALDIFKV 252 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~ 252 (892)
.+|.++|.+|+||||.|..++... .. ..+ .++.|+.... ....+.++.++.+++.+.... ...+.........+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 688999999999999999999887 22 222 4444544321 223455666667666542111 112333333333334
Q ss_pred hccCcEEEEEeccc
Q 002691 253 LSKKKFVLLLDDLW 266 (892)
Q Consensus 253 l~~kr~LlVlDdv~ 266 (892)
+.+. -+||+|..-
T Consensus 173 ~~~~-DvVIIDTAG 185 (437)
T PRK00771 173 FKKA-DVIIVDTAG 185 (437)
T ss_pred hhcC-CEEEEECCC
Confidence 4443 568888773
No 247
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0089 Score=67.20 Aligned_cols=72 Identities=32% Similarity=0.242 Sum_probs=51.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc--CHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL--QLEKIQETIGKKIGLFDGLWKNRSREEKALDIFK 251 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (892)
..-|-|.|..|+|||+||+++++... +....++.+|+++.-. ..+.+++.+- ..+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------~vfse 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------NVFSE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH-------------------HHHHH
Confidence 66789999999999999999999983 5667778888776531 2333332221 22334
Q ss_pred HhccCcEEEEEeccc
Q 002691 252 VLSKKKFVLLLDDLW 266 (892)
Q Consensus 252 ~l~~kr~LlVlDdv~ 266 (892)
.+.-.+-+|||||++
T Consensus 490 ~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLD 504 (952)
T ss_pred HHhhCCcEEEEcchh
Confidence 455678999999996
No 248
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.31 E-value=0.014 Score=60.26 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=41.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCCccCHHHHHHHHHHhcC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLN---RPYGFDFVIWVVVSKDLQLEKIQETIGKKIG 231 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (892)
-.+.=|+|.+|+|||+||..++-...- ....-..++|++....|..+.+. +|++..+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 678999999999999999887654311 12223579999999999888875 4666544
No 249
>PRK09354 recA recombinase A; Provisional
Probab=96.29 E-value=0.01 Score=63.24 Aligned_cols=85 Identities=16% Similarity=0.100 Sum_probs=57.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCc---ccCCChHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGL---WKNRSREEKALDIF 250 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 250 (892)
-+++-|+|++|+||||||.+++.... ..-..++||+....++.. .+++++...+. .+..+.++....+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 67899999999999999998877652 234678899988877753 34455443211 12334555555555
Q ss_pred HHhc-cCcEEEEEeccc
Q 002691 251 KVLS-KKKFVLLLDDLW 266 (892)
Q Consensus 251 ~~l~-~kr~LlVlDdv~ 266 (892)
..++ +..-+||+|-|-
T Consensus 132 ~li~s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHhhcCCCCEEEEeChh
Confidence 5554 356699999984
No 250
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.29 E-value=0.0073 Score=73.56 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=57.5
Q ss_pred ccchHHHHHHHHHhhc------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHH
Q 002691 158 VVGLQSILEQVWSCLT------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQET 225 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (892)
++|-+..++.+...+. ...+.++|+.|+|||+||+.+++.. ...-...+-+..+.-.+...+.+
T Consensus 511 v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~~~~~~~~~~- 586 (821)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSEYMEKHTVSK- 586 (821)
T ss_pred CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchhccccccHHH-
Confidence 7899999999888775 2356789999999999999999876 22122334444443222222211
Q ss_pred HHHhcCCCCCcccCCChHHHHHHHHHHhccCc-EEEEEecccc
Q 002691 226 IGKKIGLFDGLWKNRSREEKALDIFKVLSKKK-FVLLLDDLWE 267 (892)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~ 267 (892)
-++.+.. ....+. ...+.+.++.++ .+++||+++.
T Consensus 587 ---l~g~~~g-yvg~~~---~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 587 ---LIGSPPG-YVGYNE---GGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred ---hcCCCCc-ccCcCc---cchHHHHHHhCCCeEEEECChhh
Confidence 1222211 111111 113445555555 5899999974
No 251
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.27 E-value=0.018 Score=58.39 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=32.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQ 218 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 218 (892)
-+++.|.|.+|+||||+|.+++.... ..-..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 67899999999999999999988762 2235678887765553
No 252
>PRK10867 signal recognition particle protein; Provisional
Probab=96.27 E-value=0.097 Score=58.00 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|.++|.+|+||||.|..++...
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 689999999999999998888766
No 253
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.26 E-value=0.0087 Score=58.30 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEE
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWV 211 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 211 (892)
.+|.+.|+.|+||||+|+.+++.. ...+..++++
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 589999999999999999999987 3345555555
No 254
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.26 E-value=0.0042 Score=57.67 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHhhc-----ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 159 VGLQSILEQVWSCLT-----AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 159 vGr~~~~~~l~~~l~-----~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
||....++++.+.+. ...|.|+|..|+||+++|+.+++.-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 466666777766666 5778999999999999999998875
No 255
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.04 Score=58.99 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
...+.++|+.|+||||+|..++...
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998775
No 256
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.24 E-value=0.0099 Score=67.18 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=54.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
.+++-++|++|+||||||..++++. -..++=|.+|+..+...+-..|...+.... .+
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~s-----------------~l 382 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNHS-----------------VL 382 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhcc-----------------cc
Confidence 5689999999999999999999885 235677888888777777777766554322 12
Q ss_pred c--cCcEEEEEeccccc
Q 002691 254 S--KKKFVLLLDDLWER 268 (892)
Q Consensus 254 ~--~kr~LlVlDdv~~~ 268 (892)
. +++.-||+|.++..
T Consensus 383 ~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccCCCcceEEEecccCC
Confidence 1 57888999999753
No 257
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.20 E-value=0.072 Score=62.93 Aligned_cols=148 Identities=15% Similarity=0.078 Sum_probs=80.4
Q ss_pred ccchHHHHHHHHHhhc---------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHH
Q 002691 158 VVGLQSILEQVWSCLT---------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKI 222 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (892)
+.|.+..++++.+.+. .+-|.++|++|+||||+|+.+++.. ...| +.++.+. +
T Consensus 154 i~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------~ 221 (644)
T PRK10733 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------F 221 (644)
T ss_pred HcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------h
Confidence 5677666665555443 2348999999999999999999886 2233 2222221 1
Q ss_pred HHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccccc------------c----cccccccCCC-CCCC
Q 002691 223 QETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERVD------------L----TKVGVPVPNS-RNVA 285 (892)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------------~----~~~~~~l~~~-~~~g 285 (892)
.. + . ...........+...-...+.+|++|+++.... . ..+...+... ...+
T Consensus 222 ~~-~---~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 222 VE-M---F-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred HH-h---h-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 11 0 0 011122222233333345788999999964210 1 1111111111 0234
Q ss_pred cEEEEEecchhhccc-----ccccceEEccCCChHHHHHHHHHHhCCc
Q 002691 286 SKVVFTTRLLDVCGL-----MEAHKKFKVECLSDEDAWQLFREKVGEE 328 (892)
Q Consensus 286 s~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 328 (892)
.-||.||..++.... -..+..+.++..+.++-.+++..+....
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 455557776654221 1234567888888888888888776543
No 258
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.18 E-value=0.026 Score=57.56 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=45.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLS 254 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (892)
..+.++|.+|+|||+||.++++.... .-..+++++ ..++...+-..... ...+. ..+.+.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it------~~~l~~~l~~~~~~-----~~~~~----~~~l~~l~ 161 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIIT------VADIMSAMKDTFSN-----SETSE----EQLLNDLS 161 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEE------HHHHHHHHHHHHhh-----ccccH----HHHHHHhc
Confidence 57899999999999999999998732 234556664 34455444433311 11111 22333454
Q ss_pred cCcEEEEEecccc
Q 002691 255 KKKFVLLLDDLWE 267 (892)
Q Consensus 255 ~kr~LlVlDdv~~ 267 (892)
+.=+||+||+..
T Consensus 162 -~~dlLvIDDig~ 173 (244)
T PRK07952 162 -NVDLLVIDEIGV 173 (244)
T ss_pred -cCCEEEEeCCCC
Confidence 344888899954
No 259
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.11 E-value=0.15 Score=56.27 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|.++|.+|+||||+|..++...
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998766
No 260
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.11 E-value=0.027 Score=53.90 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccC
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQ 218 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 218 (892)
++.|+|.+|+||||+|+.+..... ..-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcchH
Confidence 468999999999999999988872 2345678887766543
No 261
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.07 E-value=0.0068 Score=55.53 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.-|+|.||+|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 358999999999999999999887
No 262
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.05 E-value=0.0082 Score=59.58 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=59.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHH---HHHHhcCCCCCcccCCChHHHHHHHHH
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQE---TIGKKIGLFDGLWKNRSREEKALDIFK 251 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (892)
.+|.|+|+.|+||||++..+.... .......+++ +.++. +.... .+..+-. ...+.....+.++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t-~e~~~--E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILT-IEDPI--EFVHESKRSLINQRE------VGLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEE-EcCCc--cccccCccceeeecc------cCCCccCHHHHHHH
Confidence 578999999999999999888776 2222333332 22211 11000 0110000 01122334566777
Q ss_pred HhccCcEEEEEecccccccccccccccCCCCCCCcEEEEEecchhh
Q 002691 252 VLSKKKFVLLLDDLWERVDLTKVGVPVPNSRNVASKVVFTTRLLDV 297 (892)
Q Consensus 252 ~l~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IiiTTR~~~v 297 (892)
.++..+=.|++|++.+.+.+..+.... ..|-.++.|+-..++
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~a----~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTAA----ETGHLVMSTLHTNSA 111 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHHH----HcCCEEEEEecCCcH
Confidence 777778899999997766554433322 335557777765444
No 263
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.04 E-value=0.029 Score=59.66 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=42.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCC---CCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNR---PYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
-+++-|+|.+|+|||+||..++-..... ...-..++||+....|+.+.+.+ +++.++..
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 6788999999999999998876433111 11224789999999998888764 56666543
No 264
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.03 E-value=0.023 Score=58.42 Aligned_cols=92 Identities=21% Similarity=0.311 Sum_probs=55.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc-CHHHHHHHHHHhcCCCCCc----ccCCChH-----
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL-QLEKIQETIGKKIGLFDGL----WKNRSRE----- 243 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~----- 243 (892)
-..++|.|..|+||||||+.+++.... ++-+.++++-+.+.. .+.++.+.+...-...... ..+....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 457899999999999999999998721 223456666676654 4556666665431111000 0111111
Q ss_pred -HHHHHHHHHh--c-cCcEEEEEecccc
Q 002691 244 -EKALDIFKVL--S-KKKFVLLLDDLWE 267 (892)
Q Consensus 244 -~~~~~l~~~l--~-~kr~LlVlDdv~~ 267 (892)
..+-.+.+++ + ++.+|+|+||+-.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1223344555 3 8999999999843
No 265
>PRK06696 uridine kinase; Validated
Probab=96.03 E-value=0.0076 Score=61.18 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhhc------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 161 LQSILEQVWSCLT------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 161 r~~~~~~l~~~l~------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
|++.+++|.+.+. ..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5566666666664 6699999999999999999999887
No 266
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.01 E-value=0.016 Score=57.56 Aligned_cols=88 Identities=26% Similarity=0.303 Sum_probs=49.1
Q ss_pred CCcccEEEecCCcccccc----chhhcCCCCCcEEEecCcccc----ccC-------hhhcCcCcCCEEeccCCCcc-cc
Q 002691 537 CPHLVTLFLNNNKLEVIS----SRFFHYMPSLKVLKLSHIQLT----ELP-------SRISKLVSLQHLDLSHTRIK-EL 600 (892)
Q Consensus 537 ~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~l~----~lp-------~~i~~L~~L~~L~l~~~~i~-~l 600 (892)
+..+..+++++|.+..-. ...+.+-++|++.+++.-... ++| +.+-+|++|+..+|+.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455566666666443211 122444566666666643111 222 23456778888888887554 33
Q ss_pred ch----hhhcCCCCCEEecCCCcCccccc
Q 002691 601 PG----ELEILVNLKCLNLNHTMYLSVIP 625 (892)
Q Consensus 601 p~----~i~~l~~L~~L~l~~~~~l~~~p 625 (892)
|. -|++-++|.||.+++|. ++.+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 33 35667788888888775 44443
No 267
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.14 Score=50.34 Aligned_cols=160 Identities=16% Similarity=0.238 Sum_probs=89.0
Q ss_pred ccc-hHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHH
Q 002691 158 VVG-LQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLE 220 (892)
Q Consensus 158 ~vG-r~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 220 (892)
+|| .|..+++|.+.+. .+=+.++|++|.|||-||++++++. .+-|+.||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---H
Confidence 554 6777777777665 4567899999999999999999875 2346677754 2
Q ss_pred HHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh----ccCcEEEEEecccccc----------------cccccccccCC
Q 002691 221 KIQETIGKKIGLFDGLWKNRSREEKALDIFKVL----SKKKFVLLLDDLWERV----------------DLTKVGVPVPN 280 (892)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~----------------~~~~~~~~l~~ 280 (892)
-+++-|.+ ....+++.+ ..-+..|.+|.+++.. ...++...+..
T Consensus 217 lvqk~ige----------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 217 LVQKYIGE----------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred HHHHHhhh----------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 22222211 111222211 2356788888886421 01111111111
Q ss_pred CC-CCCcEEEEEecchhhcc-----cccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHH
Q 002691 281 SR-NVASKVVFTTRLLDVCG-----LMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVA 344 (892)
Q Consensus 281 ~~-~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~ 344 (892)
.. .+.-+||.+|..-++.. .-..++.++.++-+++.-.++++-+...-....--++..+|.++.
T Consensus 281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ 350 (404)
T KOG0728|consen 281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMP 350 (404)
T ss_pred cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCC
Confidence 00 24567887776555532 222355678888887777777766543322222234555555543
No 268
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.98 E-value=0.026 Score=59.86 Aligned_cols=113 Identities=22% Similarity=0.205 Sum_probs=62.5
Q ss_pred chHHHHHHHHHhhc-------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCC
Q 002691 160 GLQSILEQVWSCLT-------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGL 232 (892)
Q Consensus 160 Gr~~~~~~l~~~l~-------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (892)
++....+...+++. ..-+.++|..|+|||.||.++++... ... ..+.+++++ .+...+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g-~~v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKG-VSSTLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcC-CCEEEEEHH------HHHHHHHHHHhc
Confidence 44444444444444 24689999999999999999999983 222 335566543 444555444321
Q ss_pred CCCcccCCChHHHHHHHHHHhccCcEEEEEeccccc--cccc--ccccccCCC-CCCCcEEEEEec
Q 002691 233 FDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWER--VDLT--KVGVPVPNS-RNVASKVVFTTR 293 (892)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~--~~~~~l~~~-~~~gs~IiiTTR 293 (892)
.+..+. .+.++ +-=||||||+... ..|. ++...+.+. ...+-.+|+||.
T Consensus 206 -------~~~~~~----l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVKEK----IDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHHHH----HHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 111221 22222 4558999999532 2343 232222111 023456788886
No 269
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.02 Score=58.47 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=50.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCC--CCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNR--PYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFK 251 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (892)
.++|-++|++|.|||+|+++++.+. .+ .+.+....-+.++.. .++.+...+ .......+.+++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinsh----sLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSH----SLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehh----HHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 6899999999999999999999987 33 234444455555432 222222221 22334555666677
Q ss_pred HhccCc--EEEEEeccc
Q 002691 252 VLSKKK--FVLLLDDLW 266 (892)
Q Consensus 252 ~l~~kr--~LlVlDdv~ 266 (892)
.+.++. +++.+|.|.
T Consensus 244 Lv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHhCCCcEEEEEeHHHH
Confidence 776554 456678885
No 270
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.96 E-value=0.029 Score=60.79 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=73.9
Q ss_pred ccchHHHHHHHHHhhc----cc-EEEEEcCCCCcHHHHHHHHHhhccCCCC------------------CCcEEEEEEeC
Q 002691 158 VVGLQSILEQVWSCLT----AG-IIGLYGMGGVGKTTLLTLLNNKFLNRPY------------------GFDFVIWVVVS 214 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~vs 214 (892)
++|-+....++..+.. .. .+-++|++|+||||+|..+++....... ..+.+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 5666666667766666 33 4999999999999999999988721110 11233344444
Q ss_pred CccC---HHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccccc--cccccccccCCCCCCCcEEE
Q 002691 215 KDLQ---LEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVV 289 (892)
Q Consensus 215 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~Ii 289 (892)
.... ..+..+++.+...... ..++.-++|+|+++... ....+...+... ...+++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lEep-~~~~~~i 143 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEP-PKNTRFI 143 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccC-CCCeEEE
Confidence 3333 2333333333332211 03567899999997532 122222222222 4567788
Q ss_pred EEecch-hhcccc-cccceEEccCC
Q 002691 290 FTTRLL-DVCGLM-EAHKKFKVECL 312 (892)
Q Consensus 290 iTTR~~-~v~~~~-~~~~~~~l~~L 312 (892)
++|... .+.... .....+++.+.
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCc
Confidence 777733 333222 22345666663
No 271
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.94 E-value=0.014 Score=61.79 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
...++|||++|.|||.+|+++++..
T Consensus 148 PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999999997
No 272
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.91 E-value=0.053 Score=53.66 Aligned_cols=82 Identities=20% Similarity=0.151 Sum_probs=43.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCc---EEEEEEeCCccCHHHHHHHHHHh-cCCCCCcccCCChHHHHHHHHH
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKFLNRPYGFD---FVIWVVVSKDLQLEKIQETIGKK-IGLFDGLWKNRSREEKALDIFK 251 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~vs~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~l~~ 251 (892)
||+|.|.+|+||||+|+.+.... .. .... ....++...-.........--.. -..........+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L-~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL-NK-RGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TT-CTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-Cc-cCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 79999999999999999999988 22 2222 23333333222222222221111 0111111244566677777766
Q ss_pred HhccCcEE
Q 002691 252 VLSKKKFV 259 (892)
Q Consensus 252 ~l~~kr~L 259 (892)
..+++..-
T Consensus 79 L~~g~~i~ 86 (194)
T PF00485_consen 79 LKNGGSIE 86 (194)
T ss_dssp HHTTSCEE
T ss_pred HhCCCccc
Confidence 55666543
No 273
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.89 E-value=0.031 Score=54.20 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 274
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.88 E-value=0.049 Score=58.38 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=43.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLN---RPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
-++.-|+|.+|+|||+|+..++-.... ....-..++||+....|+.+++.+ +++.++..
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 678889999999999999888643311 112235789999999999888765 56666543
No 275
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.86 E-value=0.008 Score=67.24 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=38.3
Q ss_pred ccchHHHHHHHHHhhc---------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT---------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|.++.++++++.|. .+++.++|++|+||||||+.+++-.
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 7999999999999984 6799999999999999999999877
No 276
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.12 Score=59.67 Aligned_cols=148 Identities=16% Similarity=0.123 Sum_probs=84.5
Q ss_pred ccchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHH
Q 002691 158 VVGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEK 221 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (892)
+.|.+..++.+.+.+. .+.+-++|++|.|||.||+++++.. ..+|-.+.+ .
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~----- 310 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S----- 310 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H-----
Confidence 4566666666655544 4478999999999999999999965 344433211 1
Q ss_pred HHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEeccccccccc-------------ccccccCCCC-CCCcE
Q 002691 222 IQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERVDLT-------------KVGVPVPNSR-NVASK 287 (892)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~-------------~~~~~l~~~~-~~gs~ 287 (892)
.+... +-..+.......+....+..+..|.+|+++....+. .+...+.... ..+..
T Consensus 311 ---~l~sk-------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 311 ---ELLSK-------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred ---HHhcc-------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 11111 012222333333444445789999999997422111 1111121110 22333
Q ss_pred EEEEecchhhccc-----ccccceEEccCCChHHHHHHHHHHhCCc
Q 002691 288 VVFTTRLLDVCGL-----MEAHKKFKVECLSDEDAWQLFREKVGEE 328 (892)
Q Consensus 288 IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 328 (892)
||-||-.+..... ..-...+.+++-+.++..+.|+.+....
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 4445554443221 1234578899999999999999987643
No 277
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.81 E-value=0.03 Score=54.14 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=62.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCC--C---CCCc--EEEEEEeCCccCHHHHHHHHHHhcCCCCC----cccCCCh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNR--P---YGFD--FVIWVVVSKDLQLEKIQETIGKKIGLFDG----LWKNRSR 242 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~---~~f~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~~~~~~~ 242 (892)
-.+++|+|+.|+|||||.+.+..+.-.+ . ..|. .+.|+ .+ .+.+..++.... .....+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3589999999999999999986321000 0 0111 12332 22 345566654321 1111222
Q ss_pred H-HHHHHHHHHhccC--cEEEEEeccccccc---ccccccccCCCCCCCcEEEEEecchhhcccccccceEEc
Q 002691 243 E-EKALDIFKVLSKK--KFVLLLDDLWERVD---LTKVGVPVPNSRNVASKVVFTTRLLDVCGLMEAHKKFKV 309 (892)
Q Consensus 243 ~-~~~~~l~~~l~~k--r~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 309 (892)
. ...-.+...+-.+ +-++++|+.-..-+ ...+...+......|..||++|.+.+.... .+..+.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2 2222344455556 77888899754222 222222222110235678888887766532 3444544
No 278
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.031 Score=60.43 Aligned_cols=88 Identities=23% Similarity=0.328 Sum_probs=50.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-ccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSK-DLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKV 252 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (892)
..++.++|+.|+||||++.+++.... .+.....+..++... .....+-++...+.++.+.. ...+..+....+ ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~~l-~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQLAL-AE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHHHHH-HH
Confidence 46899999999999999999998751 111223556665332 22344555566666665432 122222333222 33
Q ss_pred hccCcEEEEEeccc
Q 002691 253 LSKKKFVLLLDDLW 266 (892)
Q Consensus 253 l~~kr~LlVlDdv~ 266 (892)
+.++ -+|++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4454 456689884
No 279
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.78 E-value=0.0074 Score=55.17 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 002691 177 IGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (892)
|+|.|.+|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998884
No 280
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.78 E-value=0.034 Score=58.45 Aligned_cols=86 Identities=28% Similarity=0.313 Sum_probs=46.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc-cCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD-LQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
++++++|++|+||||++..++.... ....-..+..|+.... ......+....+.++.+.. ...+..++...+. .+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~-~~ 270 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD-RL 270 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-Hc
Confidence 6899999999999999999988762 1111134566654331 1122333334444444321 2233344433333 33
Q ss_pred ccCcEEEEEecc
Q 002691 254 SKKKFVLLLDDL 265 (892)
Q Consensus 254 ~~kr~LlVlDdv 265 (892)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 347777753
No 281
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.77 E-value=0.059 Score=59.65 Aligned_cols=91 Identities=22% Similarity=0.237 Sum_probs=49.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc-cCHHHHHHHHHHhcCCCCCcc-cCCChHHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD-LQLEKIQETIGKKIGLFDGLW-KNRSREEKALDIFK 251 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 251 (892)
..++.++|.+|+||||.|..++... ..+.. ..++.|+.... +...+-++......+.+.... ...++.+......+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYL-KKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH-HHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 3689999999999999999888775 11112 23444443321 122333444555555432111 12334444444444
Q ss_pred HhccCcE-EEEEeccc
Q 002691 252 VLSKKKF-VLLLDDLW 266 (892)
Q Consensus 252 ~l~~kr~-LlVlDdv~ 266 (892)
....+.| +||+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4444455 77777764
No 282
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.025 Score=55.54 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|||.|.+|+||||+|+.++..+
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999998
No 283
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.022 Score=52.33 Aligned_cols=44 Identities=25% Similarity=0.408 Sum_probs=34.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
+|.|-|++|+||||+|+.++++. .-.| | +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----e------eccHHHHHHHHHcCCC
Confidence 78999999999999999999997 2111 1 2346788999888764
No 284
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.76 E-value=0.027 Score=57.98 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=45.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
..-+.++|.+|+|||.||.++.++.. +. --.+.++++ .++..++...... ......+.+.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~--~~-g~sv~f~~~------~el~~~Lk~~~~~----------~~~~~~l~~~l 165 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL--KA-GISVLFITA------PDLLSKLKAAFDE----------GRLEEKLLREL 165 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--Hc-CCeEEEEEH------HHHHHHHHHHHhc----------CchHHHHHHHh
Confidence 66889999999999999999999983 22 234555543 4455555544321 11111222222
Q ss_pred ccCcEEEEEecccc
Q 002691 254 SKKKFVLLLDDLWE 267 (892)
Q Consensus 254 ~~kr~LlVlDdv~~ 267 (892)
+ +-=||||||+-.
T Consensus 166 ~-~~dlLIiDDlG~ 178 (254)
T COG1484 166 K-KVDLLIIDDIGY 178 (254)
T ss_pred h-cCCEEEEecccC
Confidence 2 234899999853
No 285
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.16 Score=56.63 Aligned_cols=152 Identities=17% Similarity=0.218 Sum_probs=86.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
..=|.+||++|.|||-||++|+|.- +..| ++|-.+ +++... -. ..+...+.+.++-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-----------VG-ESErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-----------VG-ESERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-----------hh-hHHHHHHHHHHHh
Confidence 3458899999999999999999986 4455 333332 111111 11 1223333344433
Q ss_pred -ccCcEEEEEeccccc-------cc------ccccccccCCC-CCCCcEEEEEecchhhcc-----cccccceEEccCCC
Q 002691 254 -SKKKFVLLLDDLWER-------VD------LTKVGVPVPNS-RNVASKVVFTTRLLDVCG-----LMEAHKKFKVECLS 313 (892)
Q Consensus 254 -~~kr~LlVlDdv~~~-------~~------~~~~~~~l~~~-~~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~ 313 (892)
..-+++|.||.++.- .. ..++...+... ...|--||-.|..+++-. --.-+...-++.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 357899999999731 11 11222222111 024555666676666522 11234566778888
Q ss_pred hHHHHHHHHHHhCC--cccCCCCChHHHHHHHHHHhCCch
Q 002691 314 DEDAWQLFREKVGE--ETLNYHHDIPELAQMVAKECGGLP 351 (892)
Q Consensus 314 ~~ea~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~~c~glP 351 (892)
.+|-.++++..... .....+-+++++++. .+|.|.-
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88999999888763 223344567777664 3555553
No 286
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.68 E-value=0.014 Score=64.43 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=37.9
Q ss_pred ccchHHHHHHHHHhhc-ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT-AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++||++.++.+...+. ..-|.|.|.+|+|||++|+.+....
T Consensus 22 i~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 22 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred ccCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 8999999999988888 7888999999999999999999876
No 287
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.67 E-value=0.038 Score=53.83 Aligned_cols=126 Identities=19% Similarity=0.205 Sum_probs=62.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCc------------ccCCC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGL------------WKNRS 241 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------------~~~~~ 241 (892)
-.+++|.|..|.|||||++.++... . .-...+++.-. ++......+...++...+. ....+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL-K---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC-C---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 3589999999999999999998875 1 11223333211 1111111111111110000 01111
Q ss_pred h-HHHHHHHHHHhccCcEEEEEeccccccc---ccccccccCCCCCCCcEEEEEecchhhcccccccceEEc
Q 002691 242 R-EEKALDIFKVLSKKKFVLLLDDLWERVD---LTKVGVPVPNSRNVASKVVFTTRLLDVCGLMEAHKKFKV 309 (892)
Q Consensus 242 ~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 309 (892)
. +...-.+...+-.++-+++||+....-+ .+.+...+... ..+..||++|.+...... .++.+.+
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 2222334555667788999999864322 22222222222 235678888887765542 3444444
No 288
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=1.4 Score=44.94 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=58.7
Q ss_pred ccchHHHHHHHHHhhc---------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHH
Q 002691 158 VVGLQSILEQVWSCLT---------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKI 222 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (892)
+-|.+..++.+.+.+. -+-|.++|++|.||+.||++|+... . . -|++||...
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-n--S-----TFFSvSSSD----- 201 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-N--S-----TFFSVSSSD----- 201 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-C--C-----ceEEeehHH-----
Confidence 6789999988888765 4578999999999999999999886 1 2 234555431
Q ss_pred HHHHHHhcCCCCCcccCCChHHHHHHHHHHh-ccCcEEEEEecccc
Q 002691 223 QETIGKKIGLFDGLWKNRSREEKALDIFKVL-SKKKFVLLLDDLWE 267 (892)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~ 267 (892)
+.+...+ ..+.+...+.+.- .+|+..|.+|.++.
T Consensus 202 ---LvSKWmG--------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 202 ---LVSKWMG--------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ---HHHHHhc--------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1111111 2244555555544 46889999999963
No 289
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.63 E-value=0.0069 Score=60.27 Aligned_cols=105 Identities=28% Similarity=0.397 Sum_probs=73.8
Q ss_pred ccceEEEEcccccccccccccCCCCcccEEEecCC--ccccccchhhcCCCCCcEEEecCcccccc--ChhhcCcCcCCE
Q 002691 514 WVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNN--KLEVISSRFFHYMPSLKVLKLSHIQLTEL--PSRISKLVSLQH 589 (892)
Q Consensus 514 ~~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~L~~~~l~~l--p~~i~~L~~L~~ 589 (892)
...+..+++.+..+..+.. ++.+++|+.|.++.| +...-.+-....+++|++|++++|.+.-+ -..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3456677777766665543 377899999999999 43322222245679999999999977642 123567888999
Q ss_pred EeccCCCccccc----hhhhcCCCCCEEecCCCc
Q 002691 590 LDLSHTRIKELP----GELEILVNLKCLNLNHTM 619 (892)
Q Consensus 590 L~l~~~~i~~lp----~~i~~l~~L~~L~l~~~~ 619 (892)
|++..|..+.+- ..+.-+++|++|+-....
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 999999776542 235667899999876664
No 290
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.62 E-value=0.083 Score=56.83 Aligned_cols=87 Identities=21% Similarity=0.153 Sum_probs=47.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccC--HHHHHHHHHHhcCCCCCcccCCChHHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQ--LEKIQETIGKKIGLFDGLWKNRSREEKALDIFK 251 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (892)
.++|+++|.+|+||||++..++.... ... ..+..++.. .+. ..+-++...+.++.+.. ...+...+.+.+..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~--~~G-kkVglI~aD-t~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH--GKK-KTVGFITTD-HSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH--HcC-CcEEEEecC-CcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 36999999999999999999988762 122 234455443 222 22223344444443321 12344555544433
Q ss_pred Hhcc-CcEEEEEeccc
Q 002691 252 VLSK-KKFVLLLDDLW 266 (892)
Q Consensus 252 ~l~~-kr~LlVlDdv~ 266 (892)
.-.. +.=+|++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 2221 23467777764
No 291
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.58 E-value=0.01 Score=47.36 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998884
No 292
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.56 E-value=0.054 Score=58.22 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=41.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCC---CCCcEEEEEEeCCccCHHHHHHHHHHhcC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRP---YGFDFVIWVVVSKDLQLEKIQETIGKKIG 231 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (892)
-.++-|+|.+|+|||++|..++....... ..-..++||+....|+.+.+.+ +++.++
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 67889999999999999998876641111 0114799999999888877654 444444
No 293
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.56 E-value=0.061 Score=55.12 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=54.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCc-----------------
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGL----------------- 236 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------------- 236 (892)
-+++.|+|.+|+||||||.++..... ..-..++|++..+. .+.+.+.+ .+++.....
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 67999999999999999999866541 23457889988764 45555543 333321110
Q ss_pred -ccCCChHHHHHHHHHHhcc-CcEEEEEeccc
Q 002691 237 -WKNRSREEKALDIFKVLSK-KKFVLLLDDLW 266 (892)
Q Consensus 237 -~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 266 (892)
....+.++....+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112234555666666654 55588888874
No 294
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.56 E-value=0.053 Score=49.48 Aligned_cols=100 Identities=20% Similarity=0.333 Sum_probs=34.3
Q ss_pred CCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccCh-hhcCcCcCCEEeccCCCccccchh-hhcCCCCCE
Q 002691 535 PRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPS-RISKLVSLQHLDLSHTRIKELPGE-LEILVNLKC 612 (892)
Q Consensus 535 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~i~~lp~~-i~~l~~L~~ 612 (892)
.+|++|+.+.+.. .+..+....|.++.+|+.+.+.++ +..++. .+.++.+|+.+.+.. .+..++.. +..+++|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 4444444444442 234444444444444555554442 333322 233444455555543 33333322 233455555
Q ss_pred EecCCCcCccccchhhhcCCCcccEEEe
Q 002691 613 LNLNHTMYLSVIPRQLISKFSMLHVLRM 640 (892)
Q Consensus 613 L~l~~~~~l~~~p~~~i~~l~~L~~L~l 640 (892)
+.+..+ +..++...+.+. +|+.+.+
T Consensus 86 i~~~~~--~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 86 IDIPSN--ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp EEETTT---BEEHTTTTTT--T--EEE-
T ss_pred cccCcc--ccEEchhhhcCC-CceEEEE
Confidence 555332 333444434443 4444443
No 295
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.53 E-value=0.065 Score=54.95 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=35.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETI 226 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 226 (892)
-+++.|.|.+|+|||++|..+..... ..-..++||+... +..++.+.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHH
Confidence 67999999999999999998766541 2246788888765 355555543
No 296
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.52 E-value=0.016 Score=55.55 Aligned_cols=114 Identities=19% Similarity=0.240 Sum_probs=59.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC--ccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSK--DLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFK 251 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (892)
-.+++|+|..|.|||||.+.++... ......+++.-.. ..+..+.. ...++... +-...+...-.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~---qLS~G~~qrl~lar 95 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMVY---QLSVGERQMVEIAR 95 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEEE---ecCHHHHHHHHHHH
Confidence 3589999999999999999998775 2234444543211 11111111 11111110 11122233334555
Q ss_pred HhccCcEEEEEeccccccc---ccccccccCCCCCCCcEEEEEecchhh
Q 002691 252 VLSKKKFVLLLDDLWERVD---LTKVGVPVPNSRNVASKVVFTTRLLDV 297 (892)
Q Consensus 252 ~l~~kr~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~IiiTTR~~~v 297 (892)
.+-.++-++++|+.-..-+ ...+...+......|.-||++|.+...
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 6667788899999854322 222222221110235668888887653
No 297
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.51 E-value=0.04 Score=60.04 Aligned_cols=83 Identities=20% Similarity=0.265 Sum_probs=48.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcc---cCCChHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLW---KNRSREEKALDIF 250 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 250 (892)
-.++.|.|.+|+|||||+..++.... ..-..++|++..+. ..++. .-++.++...+.. ...+.+.....+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 67999999999999999999988762 22356788876543 33332 2234455432211 1122222222221
Q ss_pred HHhccCcEEEEEecc
Q 002691 251 KVLSKKKFVLLLDDL 265 (892)
Q Consensus 251 ~~l~~kr~LlVlDdv 265 (892)
+.+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567888887
No 298
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.49 E-value=0.058 Score=57.58 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=40.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCCccCHHHHHHHHHHhcCC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLN---RPYGFDFVIWVVVSKDLQLEKIQETIGKKIGL 232 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (892)
-.++.|+|.+|+||||||..++..... ....-..++|++....+..+++ .++++.++.
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 679999999999999999988764311 1112246799998888887764 445555544
No 299
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.48 E-value=0.57 Score=50.65 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=37.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC-CccCHHHHHHHHHHhcCCC
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVS-KDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~~i~~~l~~~ 233 (892)
.||-.+|.-|.||||-|-.+++.+. . +-..+.-|++. ..+..-+-++.+.++.+.+
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lk-k--~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLK-K--KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHH-H--cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 6789999999999999999999882 2 22223333322 2233445667777777654
No 300
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.48 E-value=0.13 Score=51.06 Aligned_cols=165 Identities=15% Similarity=0.248 Sum_probs=90.6
Q ss_pred ccchHHHHHH---HHHhhc---------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHH
Q 002691 158 VVGLQSILEQ---VWSCLT---------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQET 225 (892)
Q Consensus 158 ~vGr~~~~~~---l~~~l~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (892)
+||.+..+.+ |++.|. .+-|..+|++|.|||-+|+++++.. +-.|-. +. ..++
T Consensus 123 ViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~l~-----vk----at~l--- 187 (368)
T COG1223 123 VIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLLL-----VK----ATEL--- 187 (368)
T ss_pred hhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCceEE-----ec----hHHH---
Confidence 6888776644 444554 6789999999999999999999987 333321 11 1111
Q ss_pred HHHhcCCCCCcccCCChHHHHHHHHHHh-ccCcEEEEEecccccc----------cc----cccccccCC-CCCCCcEEE
Q 002691 226 IGKKIGLFDGLWKNRSREEKALDIFKVL-SKKKFVLLLDDLWERV----------DL----TKVGVPVPN-SRNVASKVV 289 (892)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~~----~~~~~~l~~-~~~~gs~Ii 289 (892)
|.+.. .+....+..+.++- +.-++.+.+|.++-.. +. ..+...+.. ..+.|-..|
T Consensus 188 iGehV---------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 188 IGEHV---------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHh---------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 11111 11222223333322 3468999999986310 11 111111110 014577777
Q ss_pred EEecchhhcccc-c--ccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCc
Q 002691 290 FTTRLLDVCGLM-E--AHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGL 350 (892)
Q Consensus 290 iTTR~~~v~~~~-~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 350 (892)
-.|.+.+..... . ....++..--+++|-.+++...+-.-..+.... .+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 777776664321 1 123566777788888888888775433222222 44555666654
No 301
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.46 E-value=0.052 Score=53.28 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=34.8
Q ss_pred ccchHHHHHHHHHhhc-------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT-------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|.|...+.+++--. ..-|-+||--|+||+.|+|++.+.+
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 7898888877766443 5678899999999999999999988
No 302
>PRK08233 hypothetical protein; Provisional
Probab=95.44 E-value=0.012 Score=57.78 Aligned_cols=24 Identities=42% Similarity=0.533 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|+|.|.+|+||||+|+.++...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999876
No 303
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.43 E-value=0.057 Score=54.62 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=70.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-----ccCHHHHHHHHHHhcCCCCCcc-----cCCChH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSK-----DLQLEKIQETIGKKIGLFDGLW-----KNRSRE 243 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~ 243 (892)
-.+++|+|-.|.||||+++.+..-. ..-...+++.-.+ .....+-..++++..+...+.. +-...+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 4689999999999999999998765 2223334433211 2223344566666666443210 111122
Q ss_pred HHHHHHHHHhccCcEEEEEeccccccc------ccccccccCCCCCCCcEEEEEecchhhccccc
Q 002691 244 EKALDIFKVLSKKKFVLLLDDLWERVD------LTKVGVPVPNSRNVASKVVFTTRLLDVCGLME 302 (892)
Q Consensus 244 ~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~~~~~l~~~~~~gs~IiiTTR~~~v~~~~~ 302 (892)
...-.+.+.|.-++-++|.|..-+.-+ ...+...+.. ..|-..+..|-+-.|+..+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~--~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE--ELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH--HhCCeEEEEEEEHHhhhhhc
Confidence 223345667788999999999754322 1122222222 24566777787777766554
No 304
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.41 E-value=0.045 Score=65.22 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=35.3
Q ss_pred ccchHHHHHHHHHhhc------------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT------------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~------------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|-+..++.+.+.+. ...+.++|++|+|||++|+.++...
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 6898888888888776 2468899999999999999998886
No 305
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.0022 Score=61.05 Aligned_cols=68 Identities=18% Similarity=0.366 Sum_probs=43.1
Q ss_pred cccccCCCCEEeEecCCCccceeeccccccCCCCcCEEEEecCCCCCCC--cccccCCCccEEEEecCcch
Q 002691 718 QLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSLQKVQISLCSKLKDL--TFLVFAPNVKSIEIRSCLAM 786 (892)
Q Consensus 718 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l 786 (892)
.+..++.++.|.+.+|..+.+...+.+. ...++|+.|+|++|+++++- .++..+++|+.|.|.+.+.+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 4555667777777777776654444443 25677777777777776643 35666777777776665443
No 306
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.40 E-value=0.046 Score=52.85 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
-.+++|+|..|.|||||.+.++.-.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999998875
No 307
>PRK07667 uridine kinase; Provisional
Probab=95.40 E-value=0.015 Score=57.40 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=27.0
Q ss_pred HHHHHhhc-----ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 166 EQVWSCLT-----AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 166 ~~l~~~l~-----~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+.+.+.+. ..+|+|.|.+|+||||+|+.+....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44444444 5699999999999999999999886
No 308
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.39 E-value=0.17 Score=54.76 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=28.0
Q ss_pred HHHHHHHhhc------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 164 ILEQVWSCLT------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 164 ~~~~l~~~l~------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..+.+.+.+. ..+|+|.|.=|+||||+.+.+.+..
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444444444 5699999999999999999999887
No 309
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.38 E-value=0.085 Score=52.60 Aligned_cols=88 Identities=25% Similarity=0.409 Sum_probs=53.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc-cCHHHHHHHHHHhcCCCCCc----ccCCChHHH---
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD-LQLEKIQETIGKKIGLFDGL----WKNRSREEK--- 245 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~--- 245 (892)
-..++|.|.+|+|||+|+..+.+.. . -+.++++-+.+. ..+.++.+++...-...... ..+......
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~-~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ-D----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC-T----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc-c----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 4578999999999999999999986 1 244578878765 35566666664331110000 011121111
Q ss_pred ---HHHHHHHh--ccCcEEEEEeccc
Q 002691 246 ---ALDIFKVL--SKKKFVLLLDDLW 266 (892)
Q Consensus 246 ---~~~l~~~l--~~kr~LlVlDdv~ 266 (892)
.-.+.+++ +++.+|+++||+-
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhH
Confidence 11222333 6899999999984
No 310
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.039 Score=60.12 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=32.9
Q ss_pred ccchHH---HHHHHHHhhc------------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQS---ILEQVWSCLT------------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~---~~~~l~~~l~------------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+-|-|+ ++++|++.|. .+=|.++|++|.|||-||++++...
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 446655 5667777776 5568899999999999999999886
No 311
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.30 E-value=0.0092 Score=35.27 Aligned_cols=18 Identities=44% Similarity=0.582 Sum_probs=8.6
Q ss_pred CcEEEecCccccccChhh
Q 002691 564 LKVLKLSHIQLTELPSRI 581 (892)
Q Consensus 564 L~~L~L~~~~l~~lp~~i 581 (892)
|++|+|++|.++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555444444443
No 312
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.29 E-value=0.015 Score=54.34 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998876
No 313
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.28 E-value=0.036 Score=61.97 Aligned_cols=88 Identities=22% Similarity=0.195 Sum_probs=49.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEE-EEEeCCcc-CHHHHHHHHHHhcCCCCCcccCCC------hHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVI-WVVVSKDL-QLEKIQETIGKKIGLFDGLWKNRS------REEK 245 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 245 (892)
-....|+|.+|+|||||++.|++.... .+-++.+ .+-|.+.. .+.++.+.+-..+-... .+.. ....
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~--n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT---~D~p~~~~~~~a~~ 490 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITT--NNPECHLMVVLVDERPEEVTDMQRSVKGEVIAST---FDRPPSDHTTVAEL 490 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhh--cCCCeEEEEEEEeCchhhHHHHHHhccceEEEEC---CCCCHHHHHHHHHH
Confidence 457899999999999999999997622 2334333 33455433 23333333311111000 1111 1222
Q ss_pred HHHHHHHh--ccCcEEEEEeccc
Q 002691 246 ALDIFKVL--SKKKFVLLLDDLW 266 (892)
Q Consensus 246 ~~~l~~~l--~~kr~LlVlDdv~ 266 (892)
+..+.+++ .++.+||++|++-
T Consensus 491 ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 491 AIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHcCCCEEEEEeCch
Confidence 33344455 6799999999984
No 314
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.27 E-value=0.11 Score=55.85 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=42.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLN---RPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 233 (892)
-.++-|+|.+|+|||+||..++-.... ....-..++|++....|..+++. +|++.++..
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 678899999999999999887754311 11122379999999999888764 556666543
No 315
>PTZ00301 uridine kinase; Provisional
Probab=95.26 E-value=0.014 Score=58.11 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|||.|.+|+||||||+.+....
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 589999999999999999998775
No 316
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.26 E-value=0.026 Score=56.22 Aligned_cols=85 Identities=26% Similarity=0.289 Sum_probs=65.0
Q ss_pred hcCCCCCcEEEecCccccc-----cChhhcCcCcCCEEeccCC---Ccc-ccch-------hhhcCCCCCEEecCCCcCc
Q 002691 558 FHYMPSLKVLKLSHIQLTE-----LPSRISKLVSLQHLDLSHT---RIK-ELPG-------ELEILVNLKCLNLNHTMYL 621 (892)
Q Consensus 558 ~~~l~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~---~i~-~lp~-------~i~~l~~L~~L~l~~~~~l 621 (892)
+..+..+..++||+|.|.. +...|.+-.+|+..+++.- ..+ ++|. .+-+|++|+..+|++|-+-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3458889999999997763 5667778889999999874 222 4444 3567899999999999876
Q ss_pred cccchh---hhcCCCcccEEEeec
Q 002691 622 SVIPRQ---LISKFSMLHVLRMFS 642 (892)
Q Consensus 622 ~~~p~~---~i~~l~~L~~L~l~~ 642 (892)
...|.. .|++-+.|.+|.+..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeec
Confidence 666653 467888999999974
No 317
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.0013 Score=65.22 Aligned_cols=97 Identities=26% Similarity=0.290 Sum_probs=63.2
Q ss_pred cceEEEEcccccccccccccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccC--hhhcCcCcCCEEec
Q 002691 515 VKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELP--SRISKLVSLQHLDL 592 (892)
Q Consensus 515 ~~l~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l 592 (892)
.+++.|++.++.+.++.-. ..|+.|++|.|+-|.++.+.+ +..|+.|+.|.|..|.|..+- ..+.+|++|+.|-|
T Consensus 19 ~~vkKLNcwg~~L~DIsic-~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISIC-EKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHHH-HhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3456666666666666433 667777777777777766654 667777777777777666553 23567777787777
Q ss_pred cCCCcc--ccc----hhhhcCCCCCEEe
Q 002691 593 SHTRIK--ELP----GELEILVNLKCLN 614 (892)
Q Consensus 593 ~~~~i~--~lp----~~i~~l~~L~~L~ 614 (892)
..|.-. .-+ ..+.-|+||+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 766322 111 2367788888886
No 318
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.25 E-value=0.049 Score=52.80 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
-.+++|+|..|.|||||.+.++...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3589999999999999999998865
No 319
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.23 E-value=0.04 Score=54.52 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+++.|.|.+|+||||+++.+....
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHH
Confidence 5689999999999999999988776
No 320
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.23 E-value=0.083 Score=52.25 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=29.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCC-------CcEEEEEEeCCc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYG-------FDFVIWVVVSKD 216 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~vs~~ 216 (892)
-.++.|+|.+|+||||++..+.......... -..++|++....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 3689999999999999999988877432222 237888887665
No 321
>PRK03839 putative kinase; Provisional
Probab=95.22 E-value=0.015 Score=56.81 Aligned_cols=23 Identities=52% Similarity=0.756 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 322
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.16 Score=54.54 Aligned_cols=88 Identities=22% Similarity=0.118 Sum_probs=52.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc-cCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD-LQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKV 252 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (892)
.+++.++|+.|+||||++..++.... .. -..+.+|+.... ....+-++..++.++.+.. ...+..++...+...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~-~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~l 280 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLL-KQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQYM 280 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHHH
Confidence 56899999999999999999987762 22 245666765432 2234455556666654321 233455554444332
Q ss_pred h-ccCcEEEEEeccc
Q 002691 253 L-SKKKFVLLLDDLW 266 (892)
Q Consensus 253 l-~~kr~LlVlDdv~ 266 (892)
- .+..=+|++|-.-
T Consensus 281 ~~~~~~D~VLIDTAG 295 (407)
T PRK12726 281 TYVNCVDHILIDTVG 295 (407)
T ss_pred HhcCCCCEEEEECCC
Confidence 2 1344577788774
No 323
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.062 Score=61.39 Aligned_cols=87 Identities=22% Similarity=0.270 Sum_probs=57.9
Q ss_pred ccchHHHHHHHHHhhc---------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHH
Q 002691 158 VVGLQSILEQVWSCLT---------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKI 222 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (892)
+=|.++.+.+|.+-+. .+=|-++|++|.|||-+||+|+..++ .-|++|-.+ ++
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP----EL 741 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP----EL 741 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCH----HH
Confidence 5578999999888765 45688999999999999999999871 234555443 11
Q ss_pred HHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccc
Q 002691 223 QETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWE 267 (892)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 267 (892)
+..- -..+++...+.+.+.-..++++|.||.+++
T Consensus 742 LNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 742 LNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1110 122333333333333345899999999975
No 324
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.21 E-value=0.029 Score=54.21 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.|.|.|.+|+||||+|+.+.++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 325
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.20 E-value=0.058 Score=50.41 Aligned_cols=102 Identities=24% Similarity=0.325 Sum_probs=54.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
-.+++|+|..|.|||||++.+.... . .....+++.-. ..++... +-...+...-.+...+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~~~-------------~~i~~~~---~lS~G~~~rv~laral 85 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL-E---PDEGIVTWGST-------------VKIGYFE---QLSGGEKMRLALAKLL 85 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC-C---CCceEEEECCe-------------EEEEEEc---cCCHHHHHHHHHHHHH
Confidence 3689999999999999999998865 1 22333443210 0000000 0111122233345556
Q ss_pred ccCcEEEEEecccccc---cccccccccCCCCCCCcEEEEEecchhhc
Q 002691 254 SKKKFVLLLDDLWERV---DLTKVGVPVPNSRNVASKVVFTTRLLDVC 298 (892)
Q Consensus 254 ~~kr~LlVlDdv~~~~---~~~~~~~~l~~~~~~gs~IiiTTR~~~v~ 298 (892)
..++-++++|+....- ....+...+... +..||++|.+.+..
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~ 130 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFL 130 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHH
Confidence 6677889999975432 222232223222 23577777765543
No 326
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.18 E-value=0.085 Score=50.69 Aligned_cols=115 Identities=15% Similarity=0.180 Sum_probs=59.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCC--C---cEEEEEEeCCccCH--HHHHHHHHHhcCCCCCcccCCChHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYG--F---DFVIWVVVSKDLQL--EKIQETIGKKIGLFDGLWKNRSREEKA 246 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f---~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~ 246 (892)
-.+++|+|..|.|||||++.+.......... + ..+.+ +.+.... ..+.+.+.-. ... .-..-+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~--~LS~G~~~r 99 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDD--VLSGGEQQR 99 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCC--CCCHHHHHH
Confidence 4589999999999999999998875111111 1 11222 2332211 1233333210 110 112223333
Q ss_pred HHHHHHhccCcEEEEEeccccccc---ccccccccCCCCCCCcEEEEEecchhhc
Q 002691 247 LDIFKVLSKKKFVLLLDDLWERVD---LTKVGVPVPNSRNVASKVVFTTRLLDVC 298 (892)
Q Consensus 247 ~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~IiiTTR~~~v~ 298 (892)
-.+...+-.++-++++|+--..-+ ...+...+... +..||++|.+....
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~ 151 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHH
Confidence 445556667778889999754322 22222222222 34577777776554
No 327
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.16 E-value=0.016 Score=58.29 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..+|+|.|.+|+||||||+.++...
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 328
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.16 E-value=0.081 Score=53.35 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+|||.|.+|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 329
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.15 E-value=0.021 Score=53.43 Aligned_cols=35 Identities=31% Similarity=0.222 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEE
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVV 212 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 212 (892)
.+|.|.|.+|+||||||+++..+. ...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 479999999999999999999998 23334455553
No 330
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.14 E-value=0.079 Score=55.90 Aligned_cols=85 Identities=15% Similarity=0.134 Sum_probs=52.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCc---ccCCChHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGL---WKNRSREEKALDIF 250 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 250 (892)
-+++-|+|..|+||||||..+.... ...-..++||+....++... ++.++...+. .+....++....+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 5799999999999999999888776 22346789999988766543 3344443222 12344555556666
Q ss_pred HHhcc-CcEEEEEeccc
Q 002691 251 KVLSK-KKFVLLLDDLW 266 (892)
Q Consensus 251 ~~l~~-kr~LlVlDdv~ 266 (892)
+.++. .--++|+|-|-
T Consensus 125 ~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHTTSESEEEEE-CT
T ss_pred HHhhcccccEEEEecCc
Confidence 66654 44588999884
No 331
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.13 E-value=0.065 Score=52.68 Aligned_cols=44 Identities=25% Similarity=0.173 Sum_probs=31.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHH
Q 002691 177 IGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQET 225 (892)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (892)
+.|.|.+|+|||+||..+..... ..-..++|++.... .+.+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC--HHHHHHH
Confidence 67999999999999999877652 22345778876553 4444443
No 332
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.09 E-value=0.1 Score=46.43 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=31.0
Q ss_pred ccchHHHHHHHHHhhc----------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT----------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|.+-..+.+++.+. .-|++.+|..|+|||.+|+.+++..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5665555555555554 4589999999999999999888874
No 333
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.08 E-value=0.086 Score=54.48 Aligned_cols=89 Identities=18% Similarity=0.099 Sum_probs=55.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHH-
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKV- 252 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~- 252 (892)
-+++=|+|+.|.||||+|.+++-.. ...-..++|++.-..++++.+.+--...+..-. ..+..+.++....+...
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~-v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLL-VSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhccee-EecCCCHHHHHHHHHHHH
Confidence 6789999999999999999887665 233448899999999988776443322121100 01233344433333333
Q ss_pred --hccCcEEEEEeccc
Q 002691 253 --LSKKKFVLLLDDLW 266 (892)
Q Consensus 253 --l~~kr~LlVlDdv~ 266 (892)
...+--|+|+|-|-
T Consensus 136 ~~~~~~i~LvVVDSva 151 (279)
T COG0468 136 RSGAEKIDLLVVDSVA 151 (279)
T ss_pred HhccCCCCEEEEecCc
Confidence 23335688888873
No 334
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.08 E-value=0.025 Score=57.72 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..+|+|.|..|.|||||++.+....
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999999887
No 335
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.013 Score=55.89 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+.|.+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467899999999999999999887
No 336
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.06 E-value=0.011 Score=34.95 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=14.0
Q ss_pred cCCEEeccCCCccccchhhhc
Q 002691 586 SLQHLDLSHTRIKELPGELEI 606 (892)
Q Consensus 586 ~L~~L~l~~~~i~~lp~~i~~ 606 (892)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766543
No 337
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.06 E-value=0.1 Score=54.42 Aligned_cols=88 Identities=23% Similarity=0.168 Sum_probs=48.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCH--HHHHHHHHHhcCCCCCc-ccCCChHHH-HHHHH
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQL--EKIQETIGKKIGLFDGL-WKNRSREEK-ALDIF 250 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~l~ 250 (892)
+++.++|++|+||||++..++.... ..-..+.+++... +.. .+-++...+..+.+.-. ....+.... ...+.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 6889999999999999999988772 2223566665442 322 23334444554432100 011222222 23333
Q ss_pred HHhccCcEEEEEeccc
Q 002691 251 KVLSKKKFVLLLDDLW 266 (892)
Q Consensus 251 ~~l~~kr~LlVlDdv~ 266 (892)
....+..=++|+|-.-
T Consensus 149 ~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 149 KAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHCCCCEEEEeCCC
Confidence 3333445578888774
No 338
>PRK00625 shikimate kinase; Provisional
Probab=95.05 E-value=0.017 Score=55.57 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.|.++||+|+||||+++.+++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 339
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.04 E-value=0.018 Score=57.75 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|+|+|++|+||||||+.++...
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 340
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.03 E-value=0.07 Score=55.32 Aligned_cols=112 Identities=15% Similarity=-0.008 Sum_probs=62.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEE---eCCccCHHHHHHHHHHhcCC-CCCc----ccCCChHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVV---VSKDLQLEKIQETIGKKIGL-FDGL----WKNRSREEK 245 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---vs~~~~~~~~~~~i~~~l~~-~~~~----~~~~~~~~~ 245 (892)
..-++|+|..|.|||||.+.++.... .....+++. +...... .++...... +... .+..+....
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhH----HHHHHHhcccccccccccccccccchH
Confidence 36789999999999999999998862 223333332 2111111 233222211 1100 011111112
Q ss_pred HHHHHHHhc-cCcEEEEEecccccccccccccccCCCCCCCcEEEEEecchhh
Q 002691 246 ALDIFKVLS-KKKFVLLLDDLWERVDLTKVGVPVPNSRNVASKVVFTTRLLDV 297 (892)
Q Consensus 246 ~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IiiTTR~~~v 297 (892)
...+...+. ..+-++|+|.+-..+.+..+...+ ..|..||+||-+..+
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----HAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----hCCCEEEEEechhHH
Confidence 333444443 578899999997666555554443 346779999987655
No 341
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.03 E-value=0.038 Score=54.19 Aligned_cols=44 Identities=39% Similarity=0.478 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHH
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEK 221 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (892)
.|+|+|-||+||||+|..+..+... .+-..+.=|+...++++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~--~~~~~VLvVDaDpd~nL~~ 45 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS--KGGYNVLVVDADPDSNLPE 45 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh--cCCceEEEEeCCCCCChHH
Confidence 6899999999999999997766622 2223455566666665443
No 342
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.00 E-value=0.1 Score=49.71 Aligned_cols=117 Identities=22% Similarity=0.206 Sum_probs=60.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcE--EEEEEeCCccCHHHHHHHHHHh---cCCCCCcccCCChH------
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDF--VIWVVVSKDLQLEKIQETIGKK---IGLFDGLWKNRSRE------ 243 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~--~~wv~vs~~~~~~~~~~~i~~~---l~~~~~~~~~~~~~------ 243 (892)
..|-|++..|.||||.|..++-+.. ...+.. +-|+.-.....-...++...-. .+.. -.+...+.+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g-~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTG-FTWETQNREADTAIA 82 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCC-CeecCCCcHHHHHHH
Confidence 4678899999999999998887762 222221 1233333233434444432000 0110 001111111
Q ss_pred -HHHHHHHHHhccCcE-EEEEecccccc-----cccccccccCCCCCCCcEEEEEecch
Q 002691 244 -EKALDIFKVLSKKKF-VLLLDDLWERV-----DLTKVGVPVPNSRNVASKVVFTTRLL 295 (892)
Q Consensus 244 -~~~~~l~~~l~~kr~-LlVlDdv~~~~-----~~~~~~~~l~~~~~~gs~IiiTTR~~ 295 (892)
+.....++.+...+| |||||.+-... +.+++...+... ..+.-||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r-p~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER-PGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC-CCCCEEEEECCCC
Confidence 122333444544554 99999985322 223333333333 4567899999975
No 343
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.99 E-value=0.05 Score=59.66 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=52.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc-CHHHHHHHHHHhcCCCCCc----ccCCChHH----
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL-QLEKIQETIGKKIGLFDGL----WKNRSREE---- 244 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~---- 244 (892)
-..++|+|..|+|||||++.+++.. ..+.++.+-+.+.. .+.++.+.++..-+..... ..+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 4689999999999999999998654 22455666666543 3455555554432211100 01111111
Q ss_pred --HHHHHHHHh--ccCcEEEEEecccc
Q 002691 245 --KALDIFKVL--SKKKFVLLLDDLWE 267 (892)
Q Consensus 245 --~~~~l~~~l--~~kr~LlVlDdv~~ 267 (892)
.+..+.+++ +++++|+++||+-.
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 122344444 58999999999843
No 344
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.03 Score=54.30 Aligned_cols=119 Identities=21% Similarity=0.282 Sum_probs=59.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCC---CcccC--------CCh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFD---GLWKN--------RSR 242 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---~~~~~--------~~~ 242 (892)
-.+++|+|..|.|||||++.++... ......+++.-....+.. ..+...++... ..+.. -+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 3589999999999999999998865 122344443211000000 11111111100 00011 111
Q ss_pred -HHHHHHHHHHhccCcEEEEEeccccccc---ccccccccCCCCCCCcEEEEEecchhhcc
Q 002691 243 -EEKALDIFKVLSKKKFVLLLDDLWERVD---LTKVGVPVPNSRNVASKVVFTTRLLDVCG 299 (892)
Q Consensus 243 -~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~IiiTTR~~~v~~ 299 (892)
+...-.+...+..++-++++|+.-..-+ ...+...+......|.-||++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1222345566677888999999854322 12222222111023567888888766443
No 345
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.98 E-value=0.03 Score=54.14 Aligned_cols=25 Identities=36% Similarity=0.696 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
-.+++|+|..|.|||||++.+..-.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4689999999999999999998765
No 346
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.97 E-value=0.021 Score=55.27 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|+|-||=|+||||||+.++++.
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHh
Confidence 689999999999999999999998
No 347
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.97 E-value=0.069 Score=52.15 Aligned_cols=119 Identities=21% Similarity=0.252 Sum_probs=62.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEE---eCCccCHHHHHH------HHHHhcCCCCC---cccCCC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVV---VSKDLQLEKIQE------TIGKKIGLFDG---LWKNRS 241 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---vs~~~~~~~~~~------~i~~~l~~~~~---~~~~~~ 241 (892)
-.+++|+|..|.|||||++.++... ......+++. +.. .+...... ++++.++.... .....+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 3589999999999999999998865 1233334432 221 12222211 14455544311 011122
Q ss_pred h-HHHHHHHHHHhccCcEEEEEeccccccc---ccccccccCCCCCC-CcEEEEEecchhh
Q 002691 242 R-EEKALDIFKVLSKKKFVLLLDDLWERVD---LTKVGVPVPNSRNV-ASKVVFTTRLLDV 297 (892)
Q Consensus 242 ~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~~~l~~~~~~-gs~IiiTTR~~~v 297 (892)
. +...-.+...+-..+-++++|+.-..-+ ...+...+...... |.-||++|.+...
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 2 2233345556667888999999854322 22222222211012 5678888877554
No 348
>PRK04328 hypothetical protein; Provisional
Probab=94.95 E-value=0.076 Score=54.81 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=31.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD 216 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 216 (892)
-+++.|.|.+|+|||+||..+..... ..-..++|++..+.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge~~lyis~ee~ 62 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGVYVALEEH 62 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEeeCC
Confidence 67899999999999999998766541 22456788887664
No 349
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.94 E-value=0.11 Score=53.07 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=30.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD 216 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 216 (892)
-.++.|.|.+|+||||+|..+...... .-..++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~---~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR---DGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEEccCC
Confidence 678999999999999999987665422 2357788877543
No 350
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.89 E-value=0.017 Score=51.37 Aligned_cols=28 Identities=39% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCcE
Q 002691 177 IGLYGMGGVGKTTLLTLLNNKFLNRPYGFDF 207 (892)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 207 (892)
|-|+|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6799999999999999999987 555643
No 351
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.87 E-value=0.11 Score=56.66 Aligned_cols=89 Identities=20% Similarity=0.153 Sum_probs=52.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCC-CCCcEEEEEEeCCc-cCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRP-YGFDFVIWVVVSKD-LQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFK 251 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (892)
.++|.++|..|+||||.+..++....... ..-..+..++.... ......++..++.++.+-. ...+.......+.+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~~ 251 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEITQ 251 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHHH
Confidence 36899999999999999999988762111 12235566655432 1223335566666665421 22334444444433
Q ss_pred HhccCcEEEEEeccc
Q 002691 252 VLSKKKFVLLLDDLW 266 (892)
Q Consensus 252 ~l~~kr~LlVlDdv~ 266 (892)
+ +..-+|++|.+.
T Consensus 252 -~-~~~DlVLIDTaG 264 (388)
T PRK12723 252 -S-KDFDLVLVDTIG 264 (388)
T ss_pred -h-CCCCEEEEcCCC
Confidence 2 345688889884
No 352
>PRK06547 hypothetical protein; Provisional
Probab=94.86 E-value=0.033 Score=53.64 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..+|+|.|.+|+||||+|+.+....
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999998875
No 353
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.85 E-value=0.024 Score=57.28 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.|.|.|++|+||||+|+.++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998886
No 354
>PRK06217 hypothetical protein; Validated
Probab=94.85 E-value=0.041 Score=53.88 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.|.|.|.+|+||||+|+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 355
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.41 Score=54.52 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=87.8
Q ss_pred ccchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHH
Q 002691 158 VVGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEK 221 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 221 (892)
+=|..+.++-+.+.+. ..=|-++|++|.|||-||.+++... . .-+|+|-.+
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-~-------~~fisvKGP----- 735 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-N-------LRFISVKGP----- 735 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-C-------eeEEEecCH-----
Confidence 3466666655555554 3458899999999999999998876 1 224555543
Q ss_pred HHHHHHHhcCCCCCcccCCChHHHHHHHHHH-hccCcEEEEEecccccc-------------cccccccccCCCC-CCCc
Q 002691 222 IQETIGKKIGLFDGLWKNRSREEKALDIFKV-LSKKKFVLLLDDLWERV-------------DLTKVGVPVPNSR-NVAS 286 (892)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~-------------~~~~~~~~l~~~~-~~gs 286 (892)
+++.+. ...+ ++..+.+.++ -.-+++.+.+|..++.. ...++...+.... -.|-
T Consensus 736 ---ElL~Ky-------IGaS-Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 736 ---ELLSKY-------IGAS-EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred ---HHHHHH-------hccc-HHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 122211 1122 3333444444 35699999999997521 1122222221111 2354
Q ss_pred EEEE-Eecchhh----cccccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCch
Q 002691 287 KVVF-TTRLLDV----CGLMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLP 351 (892)
Q Consensus 287 ~Iii-TTR~~~v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 351 (892)
-|+- |||-.-+ .+.-.-++.+.-+.-++.|-.++|+..+.......+.+++ .++.+..|.-
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~----~~a~~T~g~t 870 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLE----CLAQKTDGFT 870 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchH----HHhhhcCCCc
Confidence 4554 5553222 1211223344555566777788887766433322333333 3455555544
No 356
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.84 E-value=0.67 Score=46.76 Aligned_cols=206 Identities=14% Similarity=0.161 Sum_probs=112.3
Q ss_pred ccchHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCCc----------c----
Q 002691 158 VVGLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLNNKFLN---RPYGFDFVIWVVVSKD----------L---- 217 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~----------~---- 217 (892)
+.++++....+..... ..-+.++|+.|.||-|.+..+.+..-. .+-.-+...|.+-|.. .
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 5667777777766665 688999999999999999877776511 0112344455443221 1
Q ss_pred -------CHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcE-EEEEeccccc--ccccccccccCCCCCCCcE
Q 002691 218 -------QLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKF-VLLLDDLWER--VDLTKVGVPVPNSRNVASK 287 (892)
Q Consensus 218 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~ 287 (892)
..+-+.++|+++.+...+. +.-..+.| ++|+-.+++- +....+....... ...+|
T Consensus 95 tPSDaG~~DRvViQellKevAQt~qi--------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY-s~~~R 159 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQI--------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKY-SSNCR 159 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcch--------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHH-hcCce
Confidence 1233444444444322100 00012344 5666666531 1112222111112 44566
Q ss_pred EEEEecc--hhhcccccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcC-
Q 002691 288 VVFTTRL--LDVCGLMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLALITIGRAMAYK- 364 (892)
Q Consensus 288 IiiTTR~--~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~- 364 (892)
+|+.-.+ +-+...-...-.+++..-+++|....+++.+-.+....+ .++++.|+++++|.---...+-..++-+
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 6663221 111111111235789999999999999887765543322 7899999999998654333333333221
Q ss_pred ---------CChHHHHHHHHHHHhhh
Q 002691 365 ---------TTPEEWRYAIQVLRRAA 381 (892)
Q Consensus 365 ---------~~~~~w~~~l~~l~~~~ 381 (892)
-..-+|+-++.+.....
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a~~i 262 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIARVI 262 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHHHHH
Confidence 23568998888776543
No 357
>PRK04040 adenylate kinase; Provisional
Probab=94.84 E-value=0.022 Score=55.75 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999887
No 358
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.83 E-value=0.08 Score=53.69 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHhhhccchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhh
Q 002691 11 CDAIFTLCLNCTVNKATYVRQLKDNLRALQSELEKLIEARNDVMRRVEVAEQRRMKRTDQVQGWLSRVQAAETEVGQLTR 90 (892)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~v~~Wl~~~~~~~~~~~d~~d 90 (892)
++.+++.+.....+....+-.++.+++-++.+++.++.||+.+ +|+...+.+. .+....++...||++|+++|
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh~~-~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKHDT-NEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhhhh-hhhHHHHHHHHHhheeeeee
Confidence 5778888888888888889999999999999999999999987 5554444434 89999999999999999998
Q ss_pred cCc
Q 002691 91 DSP 93 (892)
Q Consensus 91 ~~~ 93 (892)
.+.
T Consensus 371 aCi 373 (402)
T PF12061_consen 371 ACI 373 (402)
T ss_pred hhh
Confidence 763
No 359
>PTZ00035 Rad51 protein; Provisional
Probab=94.81 E-value=0.23 Score=53.53 Aligned_cols=58 Identities=26% Similarity=0.309 Sum_probs=40.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCCccCHHHHHHHHHHhcCC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLN---RPYGFDFVIWVVVSKDLQLEKIQETIGKKIGL 232 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (892)
-.++.|+|.+|+|||||+..++-.... ....-..++|++....|+.+++ .++++.++.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 678999999999999999988755410 1112246789998887877774 344555544
No 360
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.81 E-value=0.081 Score=56.52 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 002691 177 IGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+.+.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999886
No 361
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.77 E-value=0.088 Score=57.39 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..++.++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998754
No 362
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.76 E-value=0.024 Score=55.91 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.++|+|+|++|+||||+|+.++...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998775
No 363
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.74 E-value=0.11 Score=55.71 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=41.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCC---CCCCcEEEEEEeCCccCHHHHHHHHHHhcCC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNR---PYGFDFVIWVVVSKDLQLEKIQETIGKKIGL 232 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (892)
-+++-|+|.+|+||||+|..++...... ...-..++||+....|+.+.+.+ +++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 6788999999999999999987764110 00113799999999888877654 4454443
No 364
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.74 E-value=0.067 Score=58.06 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=34.3
Q ss_pred ccchHHHHHHHHHhhc-----------------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT-----------------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-----------------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+||.++.++.+.-.+. .+-|.++|++|+||||+|+.++...
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 7888888877765554 2578999999999999999999987
No 365
>PRK05922 type III secretion system ATPase; Validated
Probab=94.71 E-value=0.086 Score=58.03 Aligned_cols=89 Identities=13% Similarity=0.255 Sum_probs=50.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-ccCHHHHHHHHHHhcCCCCCcc----cCCCh------
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSK-DLQLEKIQETIGKKIGLFDGLW----KNRSR------ 242 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~----~~~~~------ 242 (892)
-..++|+|..|+|||||.+.+.+.. . .+...++-+++ ...+.+.+.+............ .+...
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~-~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----K-STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----C-CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 5679999999999999999998764 1 23333333333 2334455555443332211000 11111
Q ss_pred HHHHHHHHHHh--ccCcEEEEEecccc
Q 002691 243 EEKALDIFKVL--SKKKFVLLLDDLWE 267 (892)
Q Consensus 243 ~~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (892)
...+..+.+++ +++++|+++||+-.
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11223344555 47999999999943
No 366
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.69 E-value=0.14 Score=52.67 Aligned_cols=94 Identities=13% Similarity=0.114 Sum_probs=57.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhcc-CCCCCCcEEEEEEeCCcc-CHHHHHHHHHHhcCCCCCc----ccCCChH----
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFL-NRPYGFDFVIWVVVSKDL-QLEKIQETIGKKIGLFDGL----WKNRSRE---- 243 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 243 (892)
-..++|.|-.|+|||||+..+.+... ..+..-+.++++-+.+.. ++.++.+++...-...... ..+...-
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 35789999999999999999887751 012335778888887754 4566666665542211100 0111111
Q ss_pred --HHHHHHHHHhc---cCcEEEEEecccc
Q 002691 244 --EKALDIFKVLS---KKKFVLLLDDLWE 267 (892)
Q Consensus 244 --~~~~~l~~~l~---~kr~LlVlDdv~~ 267 (892)
..+..+.++++ ++++|+++||+-.
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 11233445553 6899999999854
No 367
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.68 E-value=0.021 Score=50.16 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 002691 177 IGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (892)
|-|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988776
No 368
>PHA00729 NTP-binding motif containing protein
Probab=94.68 E-value=0.024 Score=56.31 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
...|.|+|.+|+||||||..+.+..
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999875
No 369
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.68 E-value=0.16 Score=51.67 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=32.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETI 226 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 226 (892)
..++.|.|.+|+||||+|.+++....+ .. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~--~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ--NG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEeCCC--CHHHHHHHH
Confidence 578999999999999998666554411 11 4567776433 455666665
No 370
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.67 E-value=0.082 Score=62.37 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=58.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCc---ccCCChHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGL---WKNRSREEKALDIF 250 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 250 (892)
-+++-|+|.+|+||||||.+++.... ..-..++|++....++.. .+++++...+. ....+.++....+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 67889999999999999987665541 223567999888877743 66666654322 13334455555566
Q ss_pred HHhcc-CcEEEEEeccc
Q 002691 251 KVLSK-KKFVLLLDDLW 266 (892)
Q Consensus 251 ~~l~~-kr~LlVlDdv~ 266 (892)
+.++. +--|||+|-+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 65544 56689999985
No 371
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.66 E-value=0.044 Score=55.86 Aligned_cols=88 Identities=22% Similarity=0.173 Sum_probs=53.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCC-------------ccc--
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDG-------------LWK-- 238 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------------~~~-- 238 (892)
-+++.|.|.+|+|||+||.++...... ..-..++||+..++ .+.+.+.+. .++.... ...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~--~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLK--NFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--HHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhh--hcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 679999999999999999887654411 11356788887665 345544433 3332100 001
Q ss_pred ---CCChHHHHHHHHHHhcc-CcEEEEEeccc
Q 002691 239 ---NRSREEKALDIFKVLSK-KKFVLLLDDLW 266 (892)
Q Consensus 239 ---~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 266 (892)
..+.+.....+.+.++. +...+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 34566777777777665 45789999874
No 372
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.66 E-value=0.022 Score=55.84 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 373
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.66 E-value=0.025 Score=52.77 Aligned_cols=20 Identities=50% Similarity=0.768 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 002691 176 IIGLYGMGGVGKTTLLTLLN 195 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~ 195 (892)
.|+|.|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 374
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.61 E-value=0.13 Score=58.51 Aligned_cols=133 Identities=20% Similarity=0.154 Sum_probs=71.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCC-----CCcEEEEEEeCC---------------cc-C-HHHHHHHHHHhcC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPY-----GFDFVIWVVVSK---------------DL-Q-LEKIQETIGKKIG 231 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~vs~---------------~~-~-~~~~~~~i~~~l~ 231 (892)
-..|+|+|+.|+|||||.+.+......... .--.+.|+.-.. .+ + .+.-.+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 468999999999999999999665411111 111222322111 01 1 1344445555555
Q ss_pred CCCCcc----cCCChHHHHH-HHHHHhccCcEEEEEecccccccc---cccccccCCCCCCCcEEEEEecchhhcccccc
Q 002691 232 LFDGLW----KNRSREEKAL-DIFKVLSKKKFVLLLDDLWERVDL---TKVGVPVPNSRNVASKVVFTTRLLDVCGLMEA 303 (892)
Q Consensus 232 ~~~~~~----~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~~~~~---~~~~~~l~~~~~~gs~IiiTTR~~~v~~~~~~ 303 (892)
.+.+.. ...+..+..+ .+...+-.++-+||||.--+.-+. +.+..++... +|+ ||+.|-++.......
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gt-vl~VSHDr~Fl~~va- 503 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGT-VLLVSHDRYFLDRVA- 503 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCe-EEEEeCCHHHHHhhc-
Confidence 543221 1223333333 344455678899999998664433 3333444443 455 777777776655443
Q ss_pred cceEEcc
Q 002691 304 HKKFKVE 310 (892)
Q Consensus 304 ~~~~~l~ 310 (892)
..++.+.
T Consensus 504 ~~i~~~~ 510 (530)
T COG0488 504 TRIWLVE 510 (530)
T ss_pred ceEEEEc
Confidence 3344444
No 375
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.61 E-value=0.079 Score=49.80 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998886
No 376
>PRK05973 replicative DNA helicase; Provisional
Probab=94.60 E-value=0.19 Score=50.78 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=34.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETI 226 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 226 (892)
-.++.|.|.+|+|||++|..+..... . .-..+++++...+ ..++.+.+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a--~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAM--K-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH--h-cCCeEEEEEEeCC--HHHHHHHH
Confidence 57899999999999999998877652 2 2346777776654 45555554
No 377
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.59 E-value=0.047 Score=51.93 Aligned_cols=114 Identities=19% Similarity=0.221 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc--CHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHH
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL--QLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKV 252 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (892)
.+++|+|..|.|||||++.+.... ......+++.-.... ..... ...++... +...-+...-.+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~---qlS~G~~~r~~l~~~ 94 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP---QLSGGQRQRVALARA 94 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHH----HhceEEEe---eCCHHHHHHHHHHHH
Confidence 589999999999999999998875 223444444321111 11111 11121110 111122333345556
Q ss_pred hccCcEEEEEeccccccc---ccccccccCCCCCCCcEEEEEecchhhcc
Q 002691 253 LSKKKFVLLLDDLWERVD---LTKVGVPVPNSRNVASKVVFTTRLLDVCG 299 (892)
Q Consensus 253 l~~kr~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~IiiTTR~~~v~~ 299 (892)
+...+-++++|+.....+ ...+...+......+.-|+++|.+.....
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 666788999999864322 22222222111022456888887765543
No 378
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.59 E-value=0.024 Score=55.13 Aligned_cols=23 Identities=43% Similarity=0.691 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999885
No 379
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.56 E-value=0.078 Score=58.92 Aligned_cols=91 Identities=22% Similarity=0.274 Sum_probs=57.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc-CHHHHHHHHHHhcCCCCCc----ccCCChH-----
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL-QLEKIQETIGKKIGLFDGL----WKNRSRE----- 243 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~----- 243 (892)
-..++|.|..|+|||||+.++.+... +.+-+.++++-+.+.. .+.++.+.+...-...... ..+.+..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 46799999999999999999988872 2356778887776543 4556666665432111000 0112221
Q ss_pred -HHHHHHHHHh---ccCcEEEEEeccc
Q 002691 244 -EKALDIFKVL---SKKKFVLLLDDLW 266 (892)
Q Consensus 244 -~~~~~l~~~l---~~kr~LlVlDdv~ 266 (892)
..+..+.+++ +++++|+++||+-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccch
Confidence 2233455555 3789999999994
No 380
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.4 Score=54.67 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=87.1
Q ss_pred ccchHHHHHHHHHhhc---------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHH
Q 002691 158 VVGLQSILEQVWSCLT---------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKI 222 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~---------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (892)
.-|.|+.++++.+.+. .+=+.++|++|.|||.||++++... .+ .| .+.|.+ +..
T Consensus 152 VAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V--PF-----f~iSGS-~FV-- 220 (596)
T COG0465 152 VAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV--PF-----FSISGS-DFV-- 220 (596)
T ss_pred hcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC--Cc-----eeccch-hhh--
Confidence 5688887777666654 4568999999999999999999986 32 22 111211 000
Q ss_pred HHHHHHhcCCCCCcccCCChHHHHHHHHHHhccCcEEEEEecccccc------------c----ccccccccCCCCC--C
Q 002691 223 QETIGKKIGLFDGLWKNRSREEKALDIFKVLSKKKFVLLLDDLWERV------------D----LTKVGVPVPNSRN--V 284 (892)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~~~~~l~~~~~--~ 284 (892)
++. -........+.+.+..++-++.|++|.++... . +.++... .++++ .
T Consensus 221 --emf----------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvE-mDGF~~~~ 287 (596)
T COG0465 221 --EMF----------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE-MDGFGGNE 287 (596)
T ss_pred --hhh----------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhh-hccCCCCC
Confidence 000 11111222233444556678999999986421 1 2222211 22323 3
Q ss_pred CcEEEEEecchhhcc-----cccccceEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCch
Q 002691 285 ASKVVFTTRLLDVCG-----LMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLP 351 (892)
Q Consensus 285 gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 351 (892)
|-.||..|..++|.. .-.-++.+.++.-+-..-.+.++-++........-++.. |++.+-|.-
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfs 355 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFS 355 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCcc
Confidence 444444555556632 112344555665555666666665554433222233333 555555543
No 381
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.54 E-value=0.024 Score=56.38 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+|+|.|.+|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 382
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.53 E-value=0.077 Score=55.12 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=57.9
Q ss_pred cchHH-HHHHHHHhhc--ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCC
Q 002691 159 VGLQS-ILEQVWSCLT--AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDG 235 (892)
Q Consensus 159 vGr~~-~~~~l~~~l~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 235 (892)
.|... ..+.+..++. ..+|.|.|..|.||||+++.+.+... ..-..++.+.-...+.... + .++..
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~----~-~q~~v--- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPG----I-NQVQV--- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCC----c-eEEEe---
Confidence 45433 3344444444 57899999999999999998877651 1112333332111111110 0 11111
Q ss_pred cccCCChHHHHHHHHHHhccCcEEEEEeccccccccccc
Q 002691 236 LWKNRSREEKALDIFKVLSKKKFVLLLDDLWERVDLTKV 274 (892)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~ 274 (892)
...........++..++..+=.|+++++.+.+....+
T Consensus 131 --~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~ 167 (264)
T cd01129 131 --NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIA 167 (264)
T ss_pred --CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHH
Confidence 1111123566677788888899999999887654433
No 383
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.53 E-value=0.083 Score=54.86 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=30.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD 216 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 216 (892)
-+++.|.|.+|+||||+|.+++..... .-..++|++...+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTVESP 75 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEecCC
Confidence 578999999999999999998665422 2356788887643
No 384
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.52 E-value=0.21 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+-.|+|+||+||||||..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999988764
No 385
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.51 E-value=0.046 Score=56.68 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+.|.|+|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999887
No 386
>PRK14974 cell division protein FtsY; Provisional
Probab=94.45 E-value=0.16 Score=54.48 Aligned_cols=90 Identities=20% Similarity=0.180 Sum_probs=48.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccC--HHHHHHHHHHhcCCCCCc-ccCCChHHHH-HHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQ--LEKIQETIGKKIGLFDGL-WKNRSREEKA-LDI 249 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~l 249 (892)
..+|.++|++|+||||++..++.... . ..+ .++.+. .+.+. ..+-++..+..++.+... ....+..... ..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~-~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLK-K-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-H-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46899999999999999988887762 2 223 344443 22332 233445566666643211 1122332222 222
Q ss_pred HHHhccCcEEEEEecccc
Q 002691 250 FKVLSKKKFVLLLDDLWE 267 (892)
Q Consensus 250 ~~~l~~kr~LlVlDdv~~ 267 (892)
...-....=+|++|-+-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 221122223888888743
No 387
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.45 E-value=0.062 Score=48.80 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..+|.+.|.-|.||||+++.++...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5699999999999999999999986
No 388
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.42 E-value=0.1 Score=58.56 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=31.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD 216 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 216 (892)
-.++.|.|.+|+|||||+..++.... ..-..++|++..+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees 119 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES 119 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc
Confidence 67999999999999999999988762 22346788876544
No 389
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.42 E-value=0.11 Score=57.72 Aligned_cols=86 Identities=27% Similarity=0.294 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc-CHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL-QLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
+++.++|++|+||||++..++... .....-..+..|+..... ...+-+....+.++.+.. ...+..+....+.+ +
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~-~ 297 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ-L 297 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-h
Confidence 589999999999999999888776 201223456666653311 112223333444444321 22333444444433 3
Q ss_pred ccCcEEEEEecc
Q 002691 254 SKKKFVLLLDDL 265 (892)
Q Consensus 254 ~~kr~LlVlDdv 265 (892)
. ..=+||+|..
T Consensus 298 ~-~~DlVlIDt~ 308 (424)
T PRK05703 298 R-DCDVILIDTA 308 (424)
T ss_pred C-CCCEEEEeCC
Confidence 3 3457888876
No 390
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.38 E-value=0.053 Score=57.44 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=35.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHH
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQET 225 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 225 (892)
+++.+.|.||+||||+|.+.+-..+. ....++-|++....++.+++..
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~---~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAE---SGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHH---cCCcEEEEEeCCCCchHhhhcc
Confidence 68999999999999999997776632 2244777777766666666544
No 391
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.38 E-value=0.1 Score=57.52 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=52.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc-CHHHHHHHHHHhcCCCCCc----ccCCChH-----
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL-QLEKIQETIGKKIGLFDGL----WKNRSRE----- 243 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~----- 243 (892)
-..++|+|..|+|||||++.+++.. . .+.++++-+.+.. .+.+..++.+..-+..... ..+....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~-~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNA-D----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc-C----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 5689999999999999999998765 1 2455556565543 3445554444332211100 0111111
Q ss_pred -HHHHHHHHHh--ccCcEEEEEecccc
Q 002691 244 -EKALDIFKVL--SKKKFVLLLDDLWE 267 (892)
Q Consensus 244 -~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (892)
..+..+.+++ +++.+|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1222344455 57999999999943
No 392
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.37 E-value=0.034 Score=53.99 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..|.++|++|+||||+|+.++...
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999986
No 393
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.36 E-value=0.056 Score=51.79 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=31.9
Q ss_pred ccchHHHHHHHHHhhc-----ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT-----AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-----~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+||.+..+.++.+.+. ..-|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4677777877777776 5567799999999999999999875
No 394
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.36 E-value=0.25 Score=51.75 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..+|||.|..|+||||+|+.+..-.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998876655
No 395
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.36 E-value=0.11 Score=57.42 Aligned_cols=88 Identities=22% Similarity=0.238 Sum_probs=49.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhc-----CCCCCcccCCChH-----
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKI-----GLFDGLWKNRSRE----- 243 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~----- 243 (892)
-..++|+|..|+|||||++.++... .....+++..-....++.++....+... ..... .+....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~q--sd~~~~~r~~~ 238 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVAT--SDESPMMRRLA 238 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEc--CCCCHHHHHHH
Confidence 5689999999999999999887654 2223445544333444554444333322 11100 111111
Q ss_pred -HHHHHHHHHh--ccCcEEEEEecccc
Q 002691 244 -EKALDIFKVL--SKKKFVLLLDDLWE 267 (892)
Q Consensus 244 -~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (892)
..+..+.+++ +++.+|+++||+-.
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 1122334444 47999999999843
No 396
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.15 Score=60.74 Aligned_cols=97 Identities=22% Similarity=0.317 Sum_probs=64.2
Q ss_pred ccchHHHHHHHHHhhc-----------ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHH
Q 002691 158 VVGLQSILEQVWSCLT-----------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETI 226 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 226 (892)
++|.++.+..|.+.+. ...+.+.|+.|+|||-||++++.-. .+..+..+-++.|+- .+ +
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~------~e-v 633 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEF------QE-V 633 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhh------hh-h
Confidence 6788888888877776 2367899999999999999999887 555555555555542 22 3
Q ss_pred HHhcCCCCCcccCCChHHHHHHHHHHhccCcE-EEEEeccccc
Q 002691 227 GKKIGLFDGLWKNRSREEKALDIFKVLSKKKF-VLLLDDLWER 268 (892)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~ 268 (892)
.+.++.+.. +.. .+....+.+.+++++| +|.||||+..
T Consensus 634 skligsp~g-yvG---~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 634 SKLIGSPPG-YVG---KEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhccCCCcc-ccc---chhHHHHHHHHhcCCceEEEEechhhc
Confidence 333333321 122 2223467778888876 7778999753
No 397
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.17 Score=54.10 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=52.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
-++|.|-|-+|+|||||...++.+.... - .++||+-.+.. .++ +--++.++.+.+.... -.+...+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~---~-~vLYVsGEES~--~Qi-klRA~RL~~~~~~l~l-~aEt~~e~I~~~l 164 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKR---G-KVLYVSGEESL--QQI-KLRADRLGLPTNNLYL-LAETNLEDIIAEL 164 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhc---C-cEEEEeCCcCH--HHH-HHHHHHhCCCccceEE-ehhcCHHHHHHHH
Confidence 6799999999999999999999998322 2 67887765543 222 2334556543322111 1122233333334
Q ss_pred c-cCcEEEEEeccc
Q 002691 254 S-KKKFVLLLDDLW 266 (892)
Q Consensus 254 ~-~kr~LlVlDdv~ 266 (892)
. .++-++|+|-+.
T Consensus 165 ~~~~p~lvVIDSIQ 178 (456)
T COG1066 165 EQEKPDLVVIDSIQ 178 (456)
T ss_pred HhcCCCEEEEeccc
Confidence 3 577899999983
No 398
>PRK13947 shikimate kinase; Provisional
Probab=94.28 E-value=0.037 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 399
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.27 E-value=0.17 Score=58.83 Aligned_cols=67 Identities=22% Similarity=0.198 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHH
Q 002691 162 QSILEQVWSCLTAGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGK 228 (892)
Q Consensus 162 ~~~~~~l~~~l~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (892)
+..+..+...+..++..|.|.+|.||||+++.+.....+....-...+.+.....--...+.+.+..
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 4455555555558899999999999999999887765221111124566666655455555555543
No 400
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.27 E-value=0.032 Score=52.38 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+|.|.|.+|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 401
>PRK13949 shikimate kinase; Provisional
Probab=94.26 E-value=0.038 Score=53.15 Aligned_cols=24 Identities=42% Similarity=0.416 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+.|.|+|++|+||||+++.+++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999987
No 402
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.26 E-value=0.22 Score=54.94 Aligned_cols=59 Identities=27% Similarity=0.304 Sum_probs=34.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-ccCHHHHHHHHHHhcCCC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSK-DLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~ 233 (892)
..+++++|..|+||||++..++... ......+.+..+.... .....+-+....+.++.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp 250 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS 250 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCc
Confidence 3689999999999999999888764 1122223444444322 122333344555555544
No 403
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.25 E-value=0.043 Score=53.42 Aligned_cols=23 Identities=39% Similarity=0.716 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 404
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.25 E-value=0.12 Score=50.00 Aligned_cols=117 Identities=20% Similarity=0.121 Sum_probs=61.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe---CCccCHHHHHHHHH--Hh--cCCCCCcccCCChHH--
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVV---SKDLQLEKIQETIG--KK--IGLFDGLWKNRSREE-- 244 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s~~~~~~~~~~~i~--~~--l~~~~~~~~~~~~~~-- 244 (892)
...|-|+|..|-||||.|..++-+.. .+--.+..+.. .....-...++.+- .- .+.. -.+...+.++
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~---g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~-~~~~~~~~~e~~ 97 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAV---GHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTG-FTWETQDRERDI 97 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCC-CcccCCCcHHHH
Confidence 57899999999999999998887762 22223333332 21234444444321 00 0110 0011111111
Q ss_pred -----HHHHHHHHhccCc-EEEEEeccccc-----ccccccccccCCCCCCCcEEEEEecch
Q 002691 245 -----KALDIFKVLSKKK-FVLLLDDLWER-----VDLTKVGVPVPNSRNVASKVVFTTRLL 295 (892)
Q Consensus 245 -----~~~~l~~~l~~kr-~LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~IiiTTR~~ 295 (892)
.....++.+...+ =|||||.+-.. .+.+++...+... ..+.-||+|-|+.
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r-p~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR-PGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC-CCCCEEEEECCCC
Confidence 2233344454444 49999998532 2233333334333 4567899999975
No 405
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.24 E-value=0.094 Score=56.97 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=35.1
Q ss_pred ccchHHHHHHHHHhhc-----------------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT-----------------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-----------------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|.+..++.+..++. ...|.++|++|+||||+|+.++...
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 7898888888877663 2578999999999999999999886
No 406
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.24 E-value=0.086 Score=54.96 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=39.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGK 228 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (892)
-+++.|+|.+|+|||++|.++.... ......++||+..+. ...+.+...+
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 7899999999999999999998887 344788999988875 4555554443
No 407
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.23 E-value=0.045 Score=53.74 Aligned_cols=94 Identities=17% Similarity=0.087 Sum_probs=49.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
...+.|+|..|.||||+++.+.... . .. ..++.+ ........-..... ++................+.++..+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i-~--~~-~~~i~i--ed~~E~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l 97 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI-P--PD-ERIITI--EDTAELQLPHPNWV-RLVTRPGNVEGSGEVTMADLLRSAL 97 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc-C--CC-CCEEEE--CCccccCCCCCCEE-EEEEecCCCCCCCccCHHHHHHHHh
Confidence 6789999999999999999998765 2 11 122222 11100000000000 0000000000111233455566677
Q ss_pred ccCcEEEEEeccccccccccc
Q 002691 254 SKKKFVLLLDDLWERVDLTKV 274 (892)
Q Consensus 254 ~~kr~LlVlDdv~~~~~~~~~ 274 (892)
+..+=.++++.+.+.+.+..+
T Consensus 98 R~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 98 RMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred ccCCCEEEEEccCcHHHHHHH
Confidence 777888899999877655433
No 408
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.22 E-value=0.076 Score=55.37 Aligned_cols=85 Identities=26% Similarity=0.348 Sum_probs=47.1
Q ss_pred HHHHhhc--ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHH
Q 002691 167 QVWSCLT--AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREE 244 (892)
Q Consensus 167 ~l~~~l~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 244 (892)
.+++.+. .+-+.++|+.|+|||++++...... .. ..| .+.-++.|...+...+++.+-..+......
T Consensus 24 ~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l-~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~-------- 92 (272)
T PF12775_consen 24 YLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSL-DS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR-------- 92 (272)
T ss_dssp HHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCS-TT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE--------
T ss_pred HHHHHHHHcCCcEEEECCCCCchhHHHHhhhccC-Cc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC--------
Confidence 3444444 6778999999999999999988765 22 222 234455555444444443322222111000
Q ss_pred HHHHHHHHhccCcEEEEEeccc
Q 002691 245 KALDIFKVLSKKKFVLLLDDLW 266 (892)
Q Consensus 245 ~~~~l~~~l~~kr~LlVlDdv~ 266 (892)
...--.+|+.++.+||+.
T Consensus 93 ----~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 93 ----VYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp ----EEEEESSSEEEEEEETTT
T ss_pred ----CCCCCCCcEEEEEecccC
Confidence 000013688899999984
No 409
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.22 E-value=0.038 Score=53.91 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.++.|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.22 E-value=0.17 Score=56.75 Aligned_cols=58 Identities=26% Similarity=0.302 Sum_probs=35.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-ccCHHHHHHHHHHhcCCC
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSK-DLQLEKIQETIGKKIGLF 233 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~ 233 (892)
.|++++|+.|+||||++.+++... ........+..|+... .....+-++...+.++.+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 689999999999999999998876 2122222455555432 122334444445555543
No 411
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.21 E-value=0.1 Score=57.43 Aligned_cols=90 Identities=24% Similarity=0.290 Sum_probs=50.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCc----ccCCChH------
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGL----WKNRSRE------ 243 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~------ 243 (892)
-..++|+|..|+|||||++.+.... . ....++...-.....+.++.+..+..-+..... ..+....
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~-~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNT-D---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC-C---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999888765 1 122233222222334555555544432211100 0111111
Q ss_pred HHHHHHHHHh--ccCcEEEEEecccc
Q 002691 244 EKALDIFKVL--SKKKFVLLLDDLWE 267 (892)
Q Consensus 244 ~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (892)
..+..+.+++ +++.+|+++||+-.
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1222344555 57899999999843
No 412
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.21 E-value=0.18 Score=47.92 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
-..+.++|+.|.|||||.+.+|...
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhh
Confidence 3578999999999999999999875
No 413
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.20 E-value=0.19 Score=52.22 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..+|.|+|.+|+|||||+..+.+..
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999999986
No 414
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.13 Score=51.04 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=31.6
Q ss_pred cchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 159 VGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 159 vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
=|=.+.++++.+... .+-|.++|++|.|||-+|++|+|+.
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 356666777666544 4568899999999999999999986
No 415
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.10 E-value=0.043 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999998875
No 416
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.08 E-value=0.11 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNK 197 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~ 197 (892)
-.+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999876
No 417
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.05 E-value=0.037 Score=52.20 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++.++|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998875
No 418
>PRK14530 adenylate kinase; Provisional
Probab=94.04 E-value=0.043 Score=55.38 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 419
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.01 E-value=0.058 Score=57.26 Aligned_cols=46 Identities=28% Similarity=0.306 Sum_probs=31.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHH
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQ 223 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 223 (892)
+++.+.|-||+||||+|.+.+-..++. -..+.-|+.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~---G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR---GKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT---TS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC---CCCeeEeecCCCccHHHHh
Confidence 689999999999999998887776322 2345555555544444444
No 420
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.00 E-value=0.062 Score=56.92 Aligned_cols=149 Identities=19% Similarity=0.313 Sum_probs=77.6
Q ss_pred ccchHHHHHHHHHhhc--------------------ccEEEEEcCCCCcHHHHHHHHHhhccCCCC-CC---cEEEEEE-
Q 002691 158 VVGLQSILEQVWSCLT--------------------AGIIGLYGMGGVGKTTLLTLLNNKFLNRPY-GF---DFVIWVV- 212 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~--------------------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f---~~~~wv~- 212 (892)
..|...+...|.+.+. -.++.|+|.+|+||||+.+++......... .+ ...+=|.
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence 3456666777777665 358999999999999999999876511111 00 0111111
Q ss_pred --------e--CCccCHHHHHHHH-------------HHhcCCCCCc-----ccC-CChHHHHHHHHHHhccCcEEEEEe
Q 002691 213 --------V--SKDLQLEKIQETI-------------GKKIGLFDGL-----WKN-RSREEKALDIFKVLSKKKFVLLLD 263 (892)
Q Consensus 213 --------v--s~~~~~~~~~~~i-------------~~~l~~~~~~-----~~~-~~~~~~~~~l~~~l~~kr~LlVlD 263 (892)
- ...++-..+++++ ++..+..+.. +.. .+.+.-..+|.+.+.++.-+++.|
T Consensus 453 nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 0 1112222333333 3333332211 111 122233456777788888999999
Q ss_pred ccccccc---ccccccccCCC-CCCCcEEEEEecchhhcccccccce
Q 002691 264 DLWERVD---LTKVGVPVPNS-RNVASKVVFTTRLLDVCGLMEAHKK 306 (892)
Q Consensus 264 dv~~~~~---~~~~~~~l~~~-~~~gs~IiiTTR~~~v~~~~~~~~~ 306 (892)
.....-+ ...+...+..- ...|+-.++.|+.+++.+.+..+..
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 9854211 11111111100 0246677777777888776655443
No 421
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.00 E-value=0.078 Score=51.94 Aligned_cols=37 Identities=35% Similarity=0.392 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVS 214 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 214 (892)
++|.|+|+.|+|||||++.+.... ...|..++..+..
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TTR 39 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTTR 39 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc---ccccccceeeccc
Confidence 689999999999999999999987 5677655555433
No 422
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.99 E-value=0.18 Score=45.94 Aligned_cols=118 Identities=19% Similarity=0.375 Sum_probs=64.0
Q ss_pred ccCccceEEEEcccccccccc-cccCCCCcccEEEecCCccccccchhhcCCCCCcEEEecCccccccCh-hhcCcCcCC
Q 002691 511 ISGWVKIRRLSLMENHIEDLS-NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPS-RISKLVSLQ 588 (892)
Q Consensus 511 ~~~~~~l~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~ 588 (892)
+.++++++.+.+.. .+..++ ..|..+++|+.+.+.++ +..++...|.+++.|+.+.+.. .+..++. .+..+.+|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44566788888774 566663 45778888999998775 7778888888888899999976 5555543 456688999
Q ss_pred EEeccCCCccccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCcc
Q 002691 589 HLDLSHTRIKELPGE-LEILVNLKCLNLNHTMYLSVIPRQLISKFSML 635 (892)
Q Consensus 589 ~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L 635 (892)
.+++..+ +..++.. +.+. +|+.+.+..+ +..++...+.+.++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 9999765 6666544 4555 8888887653 566676666666655
No 423
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.99 E-value=0.18 Score=56.65 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=30.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD 216 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 216 (892)
-.++.|.|.+|+|||||+..++..... .-..++|++..+.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EEs 133 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEES 133 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcCC
Confidence 679999999999999999999777622 1235788876543
No 424
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.98 E-value=0.17 Score=51.93 Aligned_cols=68 Identities=25% Similarity=0.247 Sum_probs=40.9
Q ss_pred HHHhhcc-cEEEEEcCCCCcHHHHHHHHHhhccCCC-------CCCcEEEEEEeCCc-cCHHHHHHHHHHhcCCCCC
Q 002691 168 VWSCLTA-GIIGLYGMGGVGKTTLLTLLNNKFLNRP-------YGFDFVIWVVVSKD-LQLEKIQETIGKKIGLFDG 235 (892)
Q Consensus 168 l~~~l~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~ 235 (892)
|-+++.. -++.|+|.||+|||||+..++=....-+ .....+++|++... .++-.-++.+..+++.++.
T Consensus 82 Id~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPa 158 (402)
T COG3598 82 IDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPA 158 (402)
T ss_pred hhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChH
Confidence 3334443 3445669999999999965543321111 23346788876543 3455566777888877653
No 425
>PRK05439 pantothenate kinase; Provisional
Probab=93.92 E-value=0.2 Score=52.81 Aligned_cols=25 Identities=40% Similarity=0.474 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.-+|||.|.+|+||||+|+.+....
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998765
No 426
>PRK08149 ATP synthase SpaL; Validated
Probab=93.92 E-value=0.24 Score=54.65 Aligned_cols=89 Identities=17% Similarity=0.290 Sum_probs=52.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc-cCHHHHHHHHHHhcCCCCCc--c--cCCCh------
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD-LQLEKIQETIGKKIGLFDGL--W--KNRSR------ 242 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~--~--~~~~~------ 242 (892)
-..++|+|..|+|||||++.+++.. ..+.++...+... .++.++..+........... + .+...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 5689999999999999999998764 1233344444433 34556666665532211000 0 11111
Q ss_pred HHHHHHHHHHh--ccCcEEEEEecccc
Q 002691 243 EEKALDIFKVL--SKKKFVLLLDDLWE 267 (892)
Q Consensus 243 ~~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (892)
...+..+.+++ +++++||++||+-.
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 12233344444 58999999999853
No 427
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.92 E-value=0.33 Score=50.95 Aligned_cols=52 Identities=19% Similarity=0.107 Sum_probs=37.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKK 229 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 229 (892)
-.++.|.|.+|+||||++..++.... ..+-..++|++...+ ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 56889999999999999999887752 222357888887663 45555555544
No 428
>PF13245 AAA_19: Part of AAA domain
Probab=93.92 E-value=0.11 Score=42.29 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=17.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNK 197 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~ 197 (892)
.+++.|.|.+|.|||+++......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567888999999999555444433
No 429
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.89 E-value=0.25 Score=52.49 Aligned_cols=88 Identities=23% Similarity=0.299 Sum_probs=50.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-ccCHHHHHHHHHHhcCCCCCc----ccCCChH-----
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSK-DLQLEKIQETIGKKIGLFDGL----WKNRSRE----- 243 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~----- 243 (892)
-..++|+|..|.|||||.+.+.+.. . -+..+..-+.. ..++.+........-+..... ..+....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 4689999999999999999998765 2 23333344433 335555555555432211000 0111111
Q ss_pred -HHHHHHHHHh--ccCcEEEEEeccc
Q 002691 244 -EKALDIFKVL--SKKKFVLLLDDLW 266 (892)
Q Consensus 244 -~~~~~l~~~l--~~kr~LlVlDdv~ 266 (892)
..+..+.+++ +++.+|+++||+-
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccch
Confidence 1122233444 5899999999984
No 430
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.86 E-value=0.12 Score=53.99 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=26.8
Q ss_pred chHHHHHHHHHhhc---ccEEEEEcCCCCcHHHHHHHHH
Q 002691 160 GLQSILEQVWSCLT---AGIIGLYGMGGVGKTTLLTLLN 195 (892)
Q Consensus 160 Gr~~~~~~l~~~l~---~~vi~I~G~gGiGKTtLa~~v~ 195 (892)
+|..+..-.+++|. +..|.+.|.+|.|||-||.+..
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHH
Confidence 35545444555565 8999999999999999886553
No 431
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.85 E-value=0.054 Score=50.12 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSK 215 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 215 (892)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4799999999999999999999983 23444444555443
No 432
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.84 E-value=0.16 Score=56.01 Aligned_cols=89 Identities=22% Similarity=0.326 Sum_probs=53.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc-CHHHHHHHHHHhcCCCCCc----ccCCChHH----
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL-QLEKIQETIGKKIGLFDGL----WKNRSREE---- 244 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~---- 244 (892)
-..++|.|..|+|||||.+.+++.. . .+.++++-+.+.. .+.++.+..+..-+..... ..+.....
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~-~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSA-E----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCC-C----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 5689999999999999999998875 1 2566777676653 3445444433321111000 01111111
Q ss_pred --HHHHHHHHh--ccCcEEEEEecccc
Q 002691 245 --KALDIFKVL--SKKKFVLLLDDLWE 267 (892)
Q Consensus 245 --~~~~l~~~l--~~kr~LlVlDdv~~ 267 (892)
.+..+.+++ +++++|+++||+-.
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122344444 58999999999843
No 433
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.83 E-value=0.15 Score=59.61 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=48.7
Q ss_pred ccchHHHHHHHHHhhc-ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcC
Q 002691 158 VVGLQSILEQVWSCLT-AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIG 231 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 231 (892)
++|.++.++.+...+. .+.+.++|++|+||||+|+.+.+.. . ...|...+++.-+ ..+...+++.++.+++
T Consensus 20 viG~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 20 VIGQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYPNP-EDPNMPRIVEVPAGEG 91 (608)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEeCC-CCCchHHHHHHHHhhc
Confidence 7899988887777776 5566699999999999999999887 2 2233333333222 2244555666666654
No 434
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.81 E-value=0.051 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|+|+|++|+||||+|+.++...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999887
No 435
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.81 E-value=1.8 Score=45.74 Aligned_cols=155 Identities=14% Similarity=0.054 Sum_probs=85.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccC-------CCCCCcEEEEEEe-CCccCHHHHHHHHHHhcCCCCCcccCCChHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLN-------RPYGFDFVIWVVV-SKDLQLEKIQETIGKKIGLFDGLWKNRSREEK 245 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 245 (892)
..+.-++|..|.||+++|+.+.+.... ...+-+.+.++.. +....++++. ++.+.+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC-----------
Confidence 567779999999999999999877511 1122223333332 2223333332 2333322111
Q ss_pred HHHHHHHhccCcEEEEEecccccc--cccccccccCCCCCCCcEEEEEecc-hhhccc-ccccceEEccCCChHHHHHHH
Q 002691 246 ALDIFKVLSKKKFVLLLDDLWERV--DLTKVGVPVPNSRNVASKVVFTTRL-LDVCGL-MEAHKKFKVECLSDEDAWQLF 321 (892)
Q Consensus 246 ~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf 321 (892)
.-.+.+-++|+||+.... ....+...+..- ..++.+|++|.+ ..+... ......+++.++++++..+.+
T Consensus 86 ------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEP-p~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l 158 (299)
T PRK07132 86 ------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEP-PKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL 158 (299)
T ss_pred ------cccCCceEEEEecccccCHHHHHHHHHHhhCC-CCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHH
Confidence 001467788999986432 223333333332 455666665543 344332 334568899999999998777
Q ss_pred HHHhCCcccCCCCChHHHHHHHHHHhCCchhHHHH
Q 002691 322 REKVGEETLNYHHDIPELAQMVAKECGGLPLALIT 356 (892)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (892)
... + .+ ++.+..++...+|.=-|+..
T Consensus 159 ~~~-~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 159 LSK-N-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHc-C-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 654 1 11 24466677777773345544
No 436
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.80 E-value=0.045 Score=65.63 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=58.0
Q ss_pred cCcEEEEEeccccccc---ccc----cccccCCCCCCCcEEEEEecchhhcccccccceEEccCCChH-HHHHHHHHHhC
Q 002691 255 KKKFVLLLDDLWERVD---LTK----VGVPVPNSRNVASKVVFTTRLLDVCGLMEAHKKFKVECLSDE-DAWQLFREKVG 326 (892)
Q Consensus 255 ~kr~LlVlDdv~~~~~---~~~----~~~~l~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~ 326 (892)
+.+-|+++|..-.-.+ -.. +...+. ..|+.+|+||-..++.........+.-..+..+ +... |..+.-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~---~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Ykl~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL---KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYKLL 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH---hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEEEC
Confidence 4789999999864322 111 222222 347889999998876433221111111111111 1000 000100
Q ss_pred CcccCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 002691 327 EETLNYHHDIPELAQMVAKECGGLPLALITIGRAMAYKTTPEEWRYAIQVLRR 379 (892)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~l~~l~~ 379 (892)
.. . + -...|-.|++++ |+|-.+.--|..+.. ......+..++.+..
T Consensus 477 ~G---~-~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 477 KG---I-P-GESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred CC---C-C-CCcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 00 0 1 124577787776 788888887777655 244566666666654
No 437
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.33 Score=49.05 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=35.8
Q ss_pred ccchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+=|.+..+++|.+... .+=|.++|.+|.|||-||++|+|..
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 4579999999998876 4567899999999999999999987
No 438
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.077 Score=52.13 Aligned_cols=41 Identities=27% Similarity=0.369 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHhhc----------------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT----------------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+=|.|-.++++.+... .+-|.++|++|.|||-||++++|+.
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 3467777777777655 5668899999999999999999986
No 439
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.78 E-value=0.22 Score=58.71 Aligned_cols=87 Identities=21% Similarity=0.293 Sum_probs=50.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-ccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSK-DLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
.+++++|+.|+||||.+.+++... ........+..++... .....+-++...+.++.+.. ...+..+..+.+. .+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~-~~ 261 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA-AL 261 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-Hh
Confidence 689999999999999999998776 2122223455555332 11244555566666665432 2234455444443 34
Q ss_pred ccCcEEEEEeccc
Q 002691 254 SKKKFVLLLDDLW 266 (892)
Q Consensus 254 ~~kr~LlVlDdv~ 266 (892)
+++. +|++|-.-
T Consensus 262 ~~~D-~VLIDTAG 273 (767)
T PRK14723 262 GDKH-LVLIDTVG 273 (767)
T ss_pred cCCC-EEEEeCCC
Confidence 4443 66777764
No 440
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.78 E-value=0.25 Score=50.80 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=50.6
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHhhccCCCCCCcEE-EEEEeCCc-cCHHHHHHHHHHhcCCCCCc----ccCCChHH--
Q 002691 174 AGIIGLYGMGGVGKTTLL-TLLNNKFLNRPYGFDFV-IWVVVSKD-LQLEKIQETIGKKIGLFDGL----WKNRSREE-- 244 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~vs~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~-- 244 (892)
-..++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+. ..+.++.+++...-...... ..++....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 357899999999999996 5565543 12333 66666665 34566666665432111000 01111111
Q ss_pred ----HHHHHHHHh--ccCcEEEEEecccc
Q 002691 245 ----KALDIFKVL--SKKKFVLLLDDLWE 267 (892)
Q Consensus 245 ----~~~~l~~~l--~~kr~LlVlDdv~~ 267 (892)
.+-.+.+++ +++.+|+|+||+-.
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 122333333 57999999999954
No 441
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.75 E-value=0.05 Score=51.55 Aligned_cols=22 Identities=50% Similarity=0.610 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 002691 177 IGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (892)
|.|+|++|+||||+|+.++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 442
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.74 E-value=0.051 Score=53.11 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998864
No 443
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.74 E-value=1.6 Score=48.58 Aligned_cols=240 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred eeecchhHHHHHHHHHhhhccchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 002691 6 GIQISCDAIFTLCLNCTVNKATYVRQLKDNLRALQSELEKLIEARNDVMRRVEVAEQRRMKRTDQVQGWLSRVQAAETEV 85 (892)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~v~~Wl~~~~~~~~~~ 85 (892)
+-|.-+..+...++.+=.+...+-.|-.+.....+.|++.-+ ++.|.++=++++. .
T Consensus 277 h~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~~~q-----------------------~K~~~kqqk~i~~-~ 332 (614)
T KOG0927|consen 277 HSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTRSELEENQ-----------------------MKAYEKQQKQIAH-M 332 (614)
T ss_pred cchhhhhhHhhhhheecccceeeecCCHHHHhhHHHHHhHHH-----------------------HHHHHHHHhHHHH-h
Q ss_pred HHhhhcCccccccccccCccCcccccccchHHHHHHHHHHHHHHhccC----CcceeecccccccccccccCCCCcc---
Q 002691 86 GQLTRDSPQEIDKLCLGGYCSRNYKSSYRFGKLVAETLLVVRTLMGER----DFDEVVVEIVEESFVADERPTEPLV--- 158 (892)
Q Consensus 86 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--- 158 (892)
.|++-.+-.... ..+++...+.+.+..+..++ -++...-... -+.+...|++. +
T Consensus 333 K~~ia~~g~g~a----------------~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~--f~~vg~~p~pv-i~~~ 393 (614)
T KOG0927|consen 333 KDLIARFGHGSA----------------KLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFR--FPEVGKIPPPV-IMVQ 393 (614)
T ss_pred hHHHHhhcccch----------------hhhHHHhhhhhhHHHHhhccccccccCCceEEEE--cccccCCCCCe-EEEe
Q ss_pred ---cchHHHHHHHHHhhc-----ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC---------------
Q 002691 159 ---VGLQSILEQVWSCLT-----AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSK--------------- 215 (892)
Q Consensus 159 ---vGr~~~~~~l~~~l~-----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--------------- 215 (892)
+|.++.- .+...+. -+.|++||+.|+|||||.+.++.+.....+.-....-.....
T Consensus 394 nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~ 472 (614)
T KOG0927|consen 394 NVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSS 472 (614)
T ss_pred ccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhH
Q ss_pred ---------ccCHHHHHHHHHHhcCCCCCc----ccCCChHHHHHHHHHHhc-cCcEEEEEeccccccccccc---cccc
Q 002691 216 ---------DLQLEKIQETIGKKIGLFDGL----WKNRSREEKALDIFKVLS-KKKFVLLLDDLWERVDLTKV---GVPV 278 (892)
Q Consensus 216 ---------~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~---~~~l 278 (892)
+....+..+.|+...+...+. +...+..+....+..++. ..+-+||||.--+.-+.+.+ ..++
T Consensus 473 le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeai 552 (614)
T KOG0927|consen 473 LEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAI 552 (614)
T ss_pred HHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHH
Q ss_pred CCCCCCCcEEEEE
Q 002691 279 PNSRNVASKVVFT 291 (892)
Q Consensus 279 ~~~~~~gs~IiiT 291 (892)
..+ .|..|+|+
T Consensus 553 Ne~--~Ggvv~vS 563 (614)
T KOG0927|consen 553 NEF--PGGVVLVS 563 (614)
T ss_pred hcc--CCceeeee
No 444
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.72 E-value=0.082 Score=52.39 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
-.++||+|..|+|||||++.+..-.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhccc
Confidence 4589999999999999999997654
No 445
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.71 E-value=0.14 Score=52.12 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHhhc----------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT----------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~----------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|..-.++.|+..+. .-+++.+|..|+||.-.++.+++..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 4565555566666555 4589999999999999999999886
No 446
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.70 E-value=0.062 Score=58.34 Aligned_cols=109 Identities=15% Similarity=0.085 Sum_probs=60.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
...|.|.|+.|.||||+.+.+.+.. .......++. +.++... ........+. ..+ ...........++..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~--~~~~~~~~i~-q~e--vg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEY--VHRNKRSLIN-QRE--VGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhh--hccCccceEE-ccc--cCCCCcCHHHHHHHhh
Confidence 5799999999999999999988765 2223333333 2222111 1100000000 000 0111233556677888
Q ss_pred ccCcEEEEEecccccccccccccccCCCCCCCcEEEEEecch
Q 002691 254 SKKKFVLLLDDLWERVDLTKVGVPVPNSRNVASKVVFTTRLL 295 (892)
Q Consensus 254 ~~kr~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IiiTTR~~ 295 (892)
+..+=.|++|.+.+.+.+....... ..|-.|+.|+-..
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa----~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA----ETGHLVFGTLHTN 230 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH----HcCCcEEEEEcCC
Confidence 8899999999998776655432221 3344566665543
No 447
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.67 E-value=0.21 Score=54.96 Aligned_cols=93 Identities=12% Similarity=0.192 Sum_probs=56.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCC--CCCc---------EEEEEEeCCccCHHHHHHHHHHhcCCCCCc-----c
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRP--YGFD---------FVIWVVVSKDLQLEKIQETIGKKIGLFDGL-----W 237 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~---------~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~ 237 (892)
-..++|.|-.|+|||||+..+.+.. ... ...| .++++-+.+.....+.+...+..-+..... .
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 4578999999999999999998775 210 0012 567777887766666555555544411110 0
Q ss_pred cCCChH------HHHHHHHHHhc---cCcEEEEEecccc
Q 002691 238 KNRSRE------EKALDIFKVLS---KKKFVLLLDDLWE 267 (892)
Q Consensus 238 ~~~~~~------~~~~~l~~~l~---~kr~LlVlDdv~~ 267 (892)
.+...- ..+..+.++++ ++++|+++||+-.
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 111111 12333556665 5999999999843
No 448
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.66 E-value=0.052 Score=51.99 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 002691 177 IGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (892)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 449
>PRK13948 shikimate kinase; Provisional
Probab=93.66 E-value=0.064 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+.|.++|+.|+||||+++.+.+..
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999999886
No 450
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.66 E-value=0.17 Score=56.06 Aligned_cols=89 Identities=21% Similarity=0.307 Sum_probs=50.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc-cCHHHHHHHHHHhcCCCCCcc----cCCCh------
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD-LQLEKIQETIGKKIGLFDGLW----KNRSR------ 242 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~------ 242 (892)
-..++|+|..|+|||||++.+.... ..+.++...+... .++.++...+...-+...... .+...
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 4689999999999999999987754 1234444444433 245555555544322211000 11111
Q ss_pred HHHHHHHHHHh--ccCcEEEEEecccc
Q 002691 243 EEKALDIFKVL--SKKKFVLLLDDLWE 267 (892)
Q Consensus 243 ~~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (892)
...+..+.+++ +++++|+++||+-.
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 11122344444 57999999999843
No 451
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.64 E-value=0.058 Score=49.85 Aligned_cols=23 Identities=52% Similarity=0.725 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 452
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.62 E-value=0.3 Score=55.85 Aligned_cols=86 Identities=17% Similarity=0.110 Sum_probs=51.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCc-------------ccCC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGL-------------WKNR 240 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------------~~~~ 240 (892)
-+++.|.|.+|+|||||+.++..... ..-..+++++..+. ..++...+ +.++..... ....
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 68999999999999999999988762 22356777766554 55555553 444432110 0112
Q ss_pred ChHHHHHHHHHHhcc-CcEEEEEecc
Q 002691 241 SREEKALDIFKVLSK-KKFVLLLDDL 265 (892)
Q Consensus 241 ~~~~~~~~l~~~l~~-kr~LlVlDdv 265 (892)
..++....+.+.+.. +.-.+|+|.+
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 234455555555543 3345666665
No 453
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.61 E-value=0.13 Score=59.89 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=55.6
Q ss_pred ccchHHHHHHHHHhhc-ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCC
Q 002691 158 VVGLQSILEQVWSCLT-AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGL 232 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 232 (892)
++|.+..++.+...+. .+.+.++|.+|+||||+|+.+.+.. . ..+++..+|..- ...+...+++.+..+++.
T Consensus 33 vigq~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l-~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 33 VIGQEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELL-P-KEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred cCChHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHc-C-hHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 7899988888877776 6789999999999999999999876 2 344677788655 334667777777766553
No 454
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.58 E-value=0.14 Score=55.52 Aligned_cols=61 Identities=28% Similarity=0.306 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHhhc-ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHH
Q 002691 158 VVGLQSILEQVWSCLT-AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQE 224 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 224 (892)
++|+++.+..+...+. -+-+.+.|.+|+|||+||+.++... . ...++|.+.......++..
T Consensus 26 ~~g~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 26 VVGDEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeccHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhcC
Confidence 7898888887777766 8889999999999999999999987 2 2334555565555555543
No 455
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.28 Score=48.17 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=38.0
Q ss_pred HHHHHHhccCcEEEEEecccccccccccc------cccCCCCCCCcEEEEEecchhhcccccccceEE
Q 002691 247 LDIFKVLSKKKFVLLLDDLWERVDLTKVG------VPVPNSRNVASKVVFTTRLLDVCGLMEAHKKFK 308 (892)
Q Consensus 247 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~------~~l~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~ 308 (892)
..+.+.+--++-+.|||..++--+.+.+. ..+. ..|+-++|.|-.+.++.....+.++-
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr---~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR---EEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh---cCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 34455555678899999998754444332 2222 34667888888888888776655543
No 456
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.54 E-value=0.21 Score=55.35 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=56.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc-CHHHHHHHHHHhcCCCCCc----ccCCChH-----
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL-QLEKIQETIGKKIGLFDGL----WKNRSRE----- 243 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~----- 243 (892)
-..++|.|..|+|||||+.++..... . ++-+.++++-+.+.. .+.++.+++...-...... ..+....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~-~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIA-K-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-h-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45799999999999999999877762 1 222467777776643 4556666665532211000 0122222
Q ss_pred -HHHHHHHHHh---ccCcEEEEEecccc
Q 002691 244 -EKALDIFKVL---SKKKFVLLLDDLWE 267 (892)
Q Consensus 244 -~~~~~l~~~l---~~kr~LlVlDdv~~ 267 (892)
..+..+.+++ +++++||++||+-.
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 2233455666 67999999999843
No 457
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.54 E-value=0.35 Score=46.35 Aligned_cols=79 Identities=20% Similarity=0.213 Sum_probs=46.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHhcc-
Q 002691 177 IGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVLSK- 255 (892)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~- 255 (892)
+.|.|..|+|||++|..+.... ...++++.-.+.++.+ +.+.|..-...... .....+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~---~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRPA---HWRTIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCCC---CceEeecHHHHHHHHHhc
Confidence 6799999999999999987652 2356777777776553 44444332111121 22222333344444422
Q ss_pred -CcEEEEEecc
Q 002691 256 -KKFVLLLDDL 265 (892)
Q Consensus 256 -kr~LlVlDdv 265 (892)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 2347999997
No 458
>PRK13946 shikimate kinase; Provisional
Probab=93.50 E-value=0.069 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+.|.++|++|+||||+|+.+++..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999986
No 459
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.49 E-value=0.11 Score=48.98 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=30.0
Q ss_pred HHHHHHhhcccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 165 LEQVWSCLTAGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 165 ~~~l~~~l~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++++.+.+..+++.++|..|+|||||+..+....
T Consensus 26 ~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 6677777778999999999999999999998874
No 460
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.49 E-value=0.064 Score=51.82 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..|.|+|+.|+||||+|+.+.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 468999999999999999999886
No 461
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.46 E-value=0.064 Score=51.23 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..+++|+|..|+|||||++.+....
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHH
Confidence 3689999999999999999999887
No 462
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.46 E-value=0.33 Score=52.30 Aligned_cols=60 Identities=23% Similarity=0.207 Sum_probs=37.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc-cCHHHHHHHHHHhcCCCC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD-LQLEKIQETIGKKIGLFD 234 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~ 234 (892)
.++|.++|+.|+||||-...++.++ .....=..+..|+...- ....+-++..++-++.+-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce
Confidence 5899999999999997665555555 21233356677765432 234455555566666553
No 463
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.44 E-value=0.11 Score=52.22 Aligned_cols=48 Identities=27% Similarity=0.244 Sum_probs=30.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKI 222 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (892)
..+|||.|+||+||+||.-.+..... .+.+=-.++=|+-|.+++--.+
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC---S
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCCCCcc
Confidence 67999999999999999999988872 2233234555555655544333
No 464
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.43 E-value=0.052 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 002691 177 IGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (892)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999886
No 465
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.42 E-value=0.066 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|.|.|.+|+||||+|+.++.+.
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999885
No 466
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.38 E-value=0.19 Score=55.53 Aligned_cols=92 Identities=24% Similarity=0.341 Sum_probs=57.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCcc-CHHHHHHHHHHhcCCCCCc----ccCCChH-----
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDL-QLEKIQETIGKKIGLFDGL----WKNRSRE----- 243 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~----- 243 (892)
-..++|.|..|+|||+|+..+.... . +.+-+.++|+-+.+.. .+.++.+++...-...... ..+....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 4579999999999999999998875 2 2234778888876654 4556666655432111000 0111111
Q ss_pred -HHHHHHHHHhc---cCcEEEEEecccc
Q 002691 244 -EKALDIFKVLS---KKKFVLLLDDLWE 267 (892)
Q Consensus 244 -~~~~~l~~~l~---~kr~LlVlDdv~~ 267 (892)
..+..+.++++ ++++|+++||+-.
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 22334556654 5899999999853
No 467
>PRK15453 phosphoribulokinase; Provisional
Probab=93.37 E-value=0.34 Score=49.90 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|+|.|.+|+||||+|+.+.+.+
T Consensus 6 piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998776
No 468
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.37 E-value=0.19 Score=51.40 Aligned_cols=64 Identities=30% Similarity=0.344 Sum_probs=35.4
Q ss_pred HHHHHHhhccc-EEEEEcCCCCcHHHHHHHHHhhccCC----CCCCcEEEEEEeCCccCHHHHHHHHHH
Q 002691 165 LEQVWSCLTAG-IIGLYGMGGVGKTTLLTLLNNKFLNR----PYGFDFVIWVVVSKDLQLEKIQETIGK 228 (892)
Q Consensus 165 ~~~l~~~l~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~vs~~~~~~~~~~~i~~ 228 (892)
.+.+...+... +..|+|++|.||||++..+....... ...-...+-++...+..+..++..+.+
T Consensus 7 ~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 7 REAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 44455555533 58999999999998776666554110 123344455555555555555555544
No 469
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.37 E-value=0.11 Score=53.02 Aligned_cols=48 Identities=29% Similarity=0.320 Sum_probs=34.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHH
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKI 222 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 222 (892)
..+|||.|.||+||+||.-.+...+ ..+.+--.++=|+-|.+++--.+
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccc
Confidence 5699999999999999999988887 33344345555665666654333
No 470
>PRK13975 thymidylate kinase; Provisional
Probab=93.36 E-value=0.066 Score=53.14 Aligned_cols=24 Identities=42% Similarity=0.565 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..|.|.|+.|+||||+|+.++...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999997
No 471
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.32 E-value=0.28 Score=54.47 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=52.0
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHhhccCC-----CCCCcEEEEEEeCCccC-HHHHHHHHHHhcCCCCCc-----ccCCC
Q 002691 174 AGIIGLYGMGGVGKTTLL-TLLNNKFLNR-----PYGFDFVIWVVVSKDLQ-LEKIQETIGKKIGLFDGL-----WKNRS 241 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~-----~~~~~ 241 (892)
-..++|.|..|+|||||| -.+.+.. .. .+.-+.++++-+++... +.+ +.+.+++-+..... ..+..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCC
Confidence 357899999999999997 5556653 11 12445778888887653 333 33333333311110 01111
Q ss_pred hHH------HHHHHHHHh--ccCcEEEEEecccc
Q 002691 242 REE------KALDIFKVL--SKKKFVLLLDDLWE 267 (892)
Q Consensus 242 ~~~------~~~~l~~~l--~~kr~LlVlDdv~~ 267 (892)
... ..-.+.+++ +++.+|+|+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 111 122233444 47999999999853
No 472
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.32 E-value=0.068 Score=53.51 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|+|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999999875
No 473
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.31 E-value=0.16 Score=50.49 Aligned_cols=24 Identities=42% Similarity=0.670 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|+|.|+.|+||||+++.+++..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999887
No 474
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.30 E-value=0.065 Score=52.63 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999997765
No 475
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.28 E-value=0.22 Score=50.82 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+|+|.|..|+||||+|+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l 23 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF 23 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 476
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.27 E-value=0.072 Score=47.78 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 002691 177 IGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (892)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998776
No 477
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.26 E-value=0.079 Score=52.87 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=37.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEE-------EeCCccCHHHH--HHHHHHhcCCCC
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWV-------VVSKDLQLEKI--QETIGKKIGLFD 234 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv-------~vs~~~~~~~~--~~~i~~~l~~~~ 234 (892)
...|.++||+|+||||..+.++.+. ..+.....++=. ...-+.|+++. +++..++.++.+
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 3578899999999999999998887 222222223222 12334455543 456777765543
No 478
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.25 E-value=0.11 Score=54.93 Aligned_cols=42 Identities=26% Similarity=0.407 Sum_probs=39.1
Q ss_pred cccchHHHHHHHHHhhc---------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 157 LVVGLQSILEQVWSCLT---------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 157 ~~vGr~~~~~~l~~~l~---------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+++|.++.++++++.+. .+++-++|+.|.||||||..+.+-.
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999888 6899999999999999999998877
No 479
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.22 E-value=0.21 Score=55.48 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=48.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHh------cCCCCCcccCCCh-----
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKK------IGLFDGLWKNRSR----- 242 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~------l~~~~~~~~~~~~----- 242 (892)
-..++|+|..|+|||||++.+.+.. .. -..++++.--...++.++....+.. +..-.. .+...
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~~~-~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~--~~~~~~~r~~ 231 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIARNT-SA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT--SDQPALMRIK 231 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccc-CC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC--CCCCHHHHHH
Confidence 6799999999999999999888765 21 2234444322333344443332211 110000 11111
Q ss_pred -HHHHHHHHHHh--ccCcEEEEEeccc
Q 002691 243 -EEKALDIFKVL--SKKKFVLLLDDLW 266 (892)
Q Consensus 243 -~~~~~~l~~~l--~~kr~LlVlDdv~ 266 (892)
...+..+.+++ +++++||++||+-
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChH
Confidence 12223344444 4799999999984
No 480
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.21 E-value=0.31 Score=54.07 Aligned_cols=90 Identities=21% Similarity=0.268 Sum_probs=52.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCc----ccCCCh------H
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGL----WKNRSR------E 243 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~------~ 243 (892)
-..++|.|..|+|||||++.++... .. -..+++..-.....+.+..+.+...-+..... ..+... .
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~-~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGT-QC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 5689999999999999999998765 11 12344443334445556555554432211100 011111 1
Q ss_pred HHHHHHHHHh--ccCcEEEEEecccc
Q 002691 244 EKALDIFKVL--SKKKFVLLLDDLWE 267 (892)
Q Consensus 244 ~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (892)
..+..+.+++ +++.+|+++||+-.
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223344555 47899999999843
No 481
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.21 E-value=0.071 Score=52.47 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNN 196 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~ 196 (892)
.+|||+|+.|+||||+|+.+.+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 482
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.19 E-value=0.43 Score=50.93 Aligned_cols=24 Identities=42% Similarity=0.599 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+++++|++|+||||++..++...
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 689999999999999999999887
No 483
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.19 E-value=0.066 Score=56.40 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhcc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFL 199 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (892)
+.|+|+|-||+||||+|..++....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La 25 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALA 25 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHH
Confidence 4789999999999999999988873
No 484
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.18 E-value=0.065 Score=51.35 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 002691 177 IGLYGMGGVGKTTLLTLLNNK 197 (892)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~ 197 (892)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999876
No 485
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.16 E-value=0.067 Score=48.35 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+-|.|.|.+|+||||+|..++...
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh
Confidence 457899999999999999999664
No 486
>PHA02244 ATPase-like protein
Probab=93.14 E-value=0.15 Score=54.47 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=29.8
Q ss_pred ccchHHHH----HHHHHhhc-ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSIL----EQVWSCLT-AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~----~~l~~~l~-~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|....+ ..+..++. ..-|.|+|++|+|||+||+++++..
T Consensus 98 ~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 98 KIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 56644433 44444444 4567889999999999999999886
No 487
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.13 E-value=0.074 Score=53.52 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|+|.|-||+||||++..++...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 579999999999999999988877
No 488
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.12 E-value=0.25 Score=54.33 Aligned_cols=42 Identities=26% Similarity=0.266 Sum_probs=34.4
Q ss_pred cccchHHHHHHHHHhhc---------------------ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 157 LVVGLQSILEQVWSCLT---------------------AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 157 ~~vGr~~~~~~l~~~l~---------------------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+||.+..++.+...+. .+.|.++|++|+|||++|+.++...
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 37899998888865551 2469999999999999999999776
No 489
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.10 E-value=0.29 Score=54.16 Aligned_cols=92 Identities=20% Similarity=0.303 Sum_probs=56.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCc-cCHHHHHHHHHHhcCCCCCc----ccCCChHH----
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKD-LQLEKIQETIGKKIGLFDGL----WKNRSREE---- 244 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~---- 244 (892)
-..++|.|..|+|||||+..+..... ..+-..++++-+.+. ..+.++++++...=...... ..+.....
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45799999999999999999887752 222346777777654 34566666665432111100 01122211
Q ss_pred --HHHHHHHHh---ccCcEEEEEecccc
Q 002691 245 --KALDIFKVL---SKKKFVLLLDDLWE 267 (892)
Q Consensus 245 --~~~~l~~~l---~~kr~LlVlDdv~~ 267 (892)
.+..+.+++ +++++|+++||+-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 233455666 46899999999953
No 490
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.09 E-value=0.077 Score=52.72 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 174 AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
..+|+|+|++|+||||||+.+....
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999876
No 491
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.09 E-value=0.075 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+++.|+|.+|+||||+.+.+....
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHH
Confidence 689999999999999998776654
No 492
>PRK04182 cytidylate kinase; Provisional
Probab=93.08 E-value=0.079 Score=51.69 Aligned_cols=23 Identities=48% Similarity=0.652 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
+|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999999886
No 493
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.05 E-value=0.088 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
-|.++||.|+||||+.+.++...
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHc
Confidence 47899999999999999999987
No 494
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.04 E-value=0.18 Score=60.53 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=35.6
Q ss_pred ccchHHHHHHHHHhhc-----ccEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 158 VVGLQSILEQVWSCLT-----AGIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 158 ~vGr~~~~~~l~~~l~-----~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|+...+.++.+.+. ..-|.|+|..|+|||++|+.+++.-
T Consensus 378 liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 378 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred eeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 8999988888877666 5578999999999999999998875
No 495
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.03 E-value=0.32 Score=46.75 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=45.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCccCHHHHHHHHHHhcCCCCCcccCC-ChHHHHHHHHHHh
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWVVVSKDLQLEKIQETIGKKIGLFDGLWKNR-SREEKALDIFKVL 253 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~l~~~l 253 (892)
.++.|.|.+|+||||+|..+.... .. .++++.....+ ..+..+.|.......+..+..- ...++...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~-~~-----~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS-GL-----QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc-CC-----CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 468999999999999999998775 11 23444444433 3345555543332222222211 1123333343333
Q ss_pred ccCcEEEEEecc
Q 002691 254 SKKKFVLLLDDL 265 (892)
Q Consensus 254 ~~kr~LlVlDdv 265 (892)
.+ .-++++|.+
T Consensus 75 ~~-~~~VlID~L 85 (170)
T PRK05800 75 AP-GRCVLVDCL 85 (170)
T ss_pred CC-CCEEEehhH
Confidence 33 337888887
No 496
>PRK06761 hypothetical protein; Provisional
Probab=93.02 E-value=0.17 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
++|.|.|++|+||||+|+.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999987
No 497
>PRK14527 adenylate kinase; Provisional
Probab=93.02 E-value=0.082 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 002691 175 GIIGLYGMGGVGKTTLLTLLNNKF 198 (892)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (892)
.+|.|+|++|+||||+|+.++...
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 498
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.99 E-value=0.071 Score=29.17 Aligned_cols=14 Identities=50% Similarity=0.667 Sum_probs=4.9
Q ss_pred CcEEEecCcccccc
Q 002691 564 LKVLKLSHIQLTEL 577 (892)
Q Consensus 564 L~~L~L~~~~l~~l 577 (892)
|+.|++++|.++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 499
>PRK14529 adenylate kinase; Provisional
Probab=92.99 E-value=0.33 Score=48.73 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=44.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEE--EeCCccCHHHHHHHHHHhcCCCCCcccCCChHHHHHHHHHHh
Q 002691 176 IIGLYGMGGVGKTTLLTLLNNKFLNRPYGFDFVIWV--VVSKDLQLEKIQETIGKKIGLFDGLWKNRSREEKALDIFKVL 253 (892)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv--~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (892)
.|.|.|++|+||||+|+.++... .. .+.+.--.+ .+..........++++.+- .....+-....+.+.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~-~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~G-------~lvpdei~~~lv~~~l 72 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKY-DL-AHIESGAIFREHIGGGTELGKKAKEYIDRG-------DLVPDDITIPMILETL 72 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CC-CCcccchhhhhhccCCChHHHHHHHHHhcc-------CcchHHHHHHHHHHHH
Confidence 37899999999999999999887 22 233211111 1222222333344444321 1122333444555565
Q ss_pred ccC-cEEEEEeccc
Q 002691 254 SKK-KFVLLLDDLW 266 (892)
Q Consensus 254 ~~k-r~LlVlDdv~ 266 (892)
.+. ..=+|||+.-
T Consensus 73 ~~~~~~g~iLDGfP 86 (223)
T PRK14529 73 KQDGKNGWLLDGFP 86 (223)
T ss_pred hccCCCcEEEeCCC
Confidence 431 3458899984
No 500
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.97 E-value=2.4 Score=45.18 Aligned_cols=49 Identities=22% Similarity=0.177 Sum_probs=35.3
Q ss_pred eEEccCCChHHHHHHHHHHhCCcccCCCCChHHHHHHHHHHhCCchhHH
Q 002691 306 KFKVECLSDEDAWQLFREKVGEETLNYHHDIPELAQMVAKECGGLPLAL 354 (892)
Q Consensus 306 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 354 (892)
++++++++.+|+..++...+...-.......+...+++.--.+|.|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887755442222344556677777779988543
Done!