Query 002692
Match_columns 892
No_of_seqs 170 out of 275
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2053 Mitochondrial inherita 100.0 2E-126 4E-131 1102.5 61.1 813 2-886 111-932 (932)
2 PF09797 NatB_MDM20: N-acetylt 100.0 7.8E-66 1.7E-70 578.2 40.0 361 146-544 1-365 (365)
3 PF12569 NARP1: NMDA receptor- 99.8 1.9E-18 4.1E-23 201.6 36.8 335 78-503 4-386 (517)
4 KOG1156 N-terminal acetyltrans 99.7 1E-13 2.2E-18 159.6 35.8 329 79-503 186-563 (700)
5 TIGR02917 PEP_TPR_lipo putativ 97.9 0.021 4.5E-07 69.8 35.2 29 6-34 504-532 (899)
6 TIGR02917 PEP_TPR_lipo putativ 97.9 0.075 1.6E-06 65.0 38.5 46 369-414 751-796 (899)
7 KOG2076 RNA polymerase III tra 97.4 0.039 8.4E-07 67.7 25.7 309 60-414 157-509 (895)
8 PRK15174 Vi polysaccharide exp 97.4 0.32 7E-06 59.8 33.9 97 61-159 61-157 (656)
9 TIGR00990 3a0801s09 mitochondr 97.3 0.089 1.9E-06 63.9 28.2 46 368-413 522-567 (615)
10 PLN03218 maturation of RBCL 1; 97.2 0.32 7E-06 62.9 32.1 83 76-158 471-554 (1060)
11 PRK11447 cellulose synthase su 97.2 0.36 7.8E-06 63.2 32.9 46 368-413 365-410 (1157)
12 PRK11447 cellulose synthase su 97.1 0.41 8.9E-06 62.7 32.6 47 368-414 617-663 (1157)
13 PLN03218 maturation of RBCL 1; 97.1 1.7 3.8E-05 56.4 38.8 327 4-415 373-711 (1060)
14 PRK15174 Vi polysaccharide exp 97.1 0.8 1.7E-05 56.5 33.2 133 9-152 50-184 (656)
15 PRK10049 pgaA outer membrane p 97.0 1.8 4E-05 54.3 37.9 145 3-157 17-161 (765)
16 PLN03077 Protein ECB2; Provisi 97.0 0.95 2.1E-05 57.3 32.8 66 355-427 528-593 (857)
17 TIGR00540 hemY_coli hemY prote 96.9 0.32 7E-06 56.2 25.8 98 58-158 100-199 (409)
18 PLN03081 pentatricopeptide (PP 96.7 0.1 2.2E-06 64.4 21.2 63 355-420 498-560 (697)
19 TIGR00540 hemY_coli hemY prote 96.7 0.72 1.6E-05 53.3 26.3 122 11-142 94-217 (409)
20 TIGR00990 3a0801s09 mitochondr 96.5 3 6.5E-05 50.8 31.3 74 84-159 134-207 (615)
21 PRK11788 tetratricopeptide rep 96.5 2.1 4.6E-05 48.1 29.5 97 61-158 54-153 (389)
22 PRK14574 hmsH outer membrane p 96.3 5 0.00011 50.9 32.2 93 60-154 52-144 (822)
23 PRK10049 pgaA outer membrane p 96.2 3.2 7E-05 52.1 30.3 83 75-158 13-95 (765)
24 PRK10747 putative protoheme IX 96.2 1.4 3.1E-05 50.8 24.8 97 59-158 101-199 (398)
25 PF13429 TPR_15: Tetratricopep 96.1 0.031 6.8E-07 60.6 10.5 77 83-160 186-262 (280)
26 PRK10747 putative protoheme IX 96.0 4.4 9.5E-05 46.8 27.8 123 13-143 96-218 (398)
27 PLN03081 pentatricopeptide (PP 95.8 7.5 0.00016 48.1 32.5 144 5-159 91-237 (697)
28 PRK15179 Vi polysaccharide bio 95.6 0.13 2.8E-06 63.5 13.8 100 59-160 103-202 (694)
29 PLN03077 Protein ECB2; Provisi 95.5 11 0.00023 48.0 30.9 65 355-422 661-725 (857)
30 PF09976 TPR_21: Tetratricopep 95.5 0.26 5.7E-06 48.4 13.0 128 6-139 13-145 (145)
31 TIGR02521 type_IV_pilW type IV 95.2 2.6 5.7E-05 42.3 19.8 146 5-158 35-181 (234)
32 PRK11788 tetratricopeptide rep 94.8 5.4 0.00012 44.9 23.0 147 4-158 110-261 (389)
33 PF13432 TPR_16: Tetratricopep 94.8 0.15 3.3E-06 42.6 7.8 61 84-145 4-64 (65)
34 KOG2002 TPR-containing nuclear 94.6 18 0.0004 45.8 27.9 112 366-486 624-746 (1018)
35 COG3063 PilF Tfp pilus assembl 94.6 2.7 5.9E-05 45.1 18.0 142 4-155 38-182 (250)
36 PRK12370 invasion protein regu 94.3 7.4 0.00016 47.0 23.6 90 58-149 320-409 (553)
37 TIGR02521 type_IV_pilW type IV 94.2 4.7 0.0001 40.4 18.7 142 7-156 71-213 (234)
38 PRK15359 type III secretion sy 93.9 0.5 1.1E-05 46.7 10.5 90 61-152 43-132 (144)
39 PRK14574 hmsH outer membrane p 93.8 26 0.00056 44.6 35.8 45 368-412 430-474 (822)
40 PF14559 TPR_19: Tetratricopep 93.7 0.18 3.8E-06 42.4 6.1 48 368-415 5-52 (68)
41 KOG0547 Translocase of outer m 93.7 4.1 8.8E-05 48.0 18.5 75 76-154 107-188 (606)
42 PRK12370 invasion protein regu 93.6 7.2 0.00016 47.1 21.8 127 15-150 318-445 (553)
43 PF13371 TPR_9: Tetratricopept 93.6 0.25 5.4E-06 42.1 6.9 65 85-150 3-67 (73)
44 KOG3060 Uncharacterized conser 93.6 2.7 5.8E-05 45.8 15.7 146 3-158 54-200 (289)
45 TIGR02552 LcrH_SycD type III s 93.4 1.1 2.4E-05 42.6 11.7 81 76-157 16-96 (135)
46 PF14559 TPR_19: Tetratricopep 93.3 0.14 3E-06 43.1 4.8 64 87-152 1-64 (68)
47 PF12895 Apc3: Anaphase-promot 93.3 0.42 9.1E-06 42.3 8.1 74 61-137 8-83 (84)
48 COG4783 Putative Zn-dependent 93.3 1.9 4.2E-05 50.5 15.3 145 4-158 309-453 (484)
49 PF09295 ChAPs: ChAPs (Chs5p-A 93.3 1.3 2.7E-05 51.5 13.9 113 35-159 169-281 (395)
50 PF13414 TPR_11: TPR repeat; P 93.0 0.48 1E-05 39.9 7.6 67 76-143 2-69 (69)
51 PRK09782 bacteriophage N4 rece 92.7 6.4 0.00014 50.9 20.4 65 91-157 590-654 (987)
52 KOG1174 Anaphase-promoting com 92.5 1.4 3.1E-05 50.6 12.4 146 1-154 368-513 (564)
53 PF13428 TPR_14: Tetratricopep 92.4 0.38 8.3E-06 37.7 5.7 39 115-153 4-42 (44)
54 PRK14720 transcript cleavage f 92.3 16 0.00034 46.7 22.5 128 2-156 32-160 (906)
55 PF13429 TPR_15: Tetratricopep 92.3 0.8 1.7E-05 49.7 10.2 85 75-159 108-193 (280)
56 PRK10370 formate-dependent nit 91.9 5.4 0.00012 41.7 15.4 120 75-227 71-193 (198)
57 PRK15359 type III secretion sy 91.8 1.9 4.1E-05 42.5 11.3 80 79-159 26-105 (144)
58 KOG2076 RNA polymerase III tra 91.8 45 0.00098 42.1 31.2 131 2-140 415-554 (895)
59 KOG4626 O-linked N-acetylgluco 91.3 23 0.00051 43.0 20.8 349 2-427 53-428 (966)
60 TIGR02552 LcrH_SycD type III s 90.9 2.2 4.7E-05 40.5 10.4 91 61-153 36-126 (135)
61 KOG1174 Anaphase-promoting com 90.9 12 0.00027 43.3 17.6 159 75-251 298-470 (564)
62 PRK15179 Vi polysaccharide bio 90.8 4.7 0.0001 50.2 15.6 137 75-251 84-220 (694)
63 PF13432 TPR_16: Tetratricopep 90.1 0.88 1.9E-05 38.0 6.1 47 367-413 10-56 (65)
64 PRK09782 bacteriophage N4 rece 88.9 5 0.00011 51.9 14.3 138 2-154 79-224 (987)
65 TIGR02795 tol_pal_ybgF tol-pal 88.0 5.8 0.00013 36.1 10.6 73 77-149 39-113 (119)
66 TIGR03302 OM_YfiO outer membra 88.0 19 0.00042 37.6 15.9 59 85-143 174-234 (235)
67 PLN03088 SGT1, suppressor of 87.9 4.5 9.7E-05 46.2 11.8 95 59-155 19-113 (356)
68 KOG1126 DNA-binding cell divis 87.5 73 0.0016 39.1 21.5 133 7-152 359-495 (638)
69 PF09295 ChAPs: ChAPs (Chs5p-A 87.3 9.2 0.0002 44.5 13.8 120 7-138 175-294 (395)
70 PRK11189 lipoprotein NlpI; Pro 87.2 13 0.00029 41.0 14.7 94 63-157 47-143 (296)
71 TIGR02795 tol_pal_ybgF tol-pal 87.2 9.9 0.00022 34.6 11.7 67 79-145 4-72 (119)
72 PF07719 TPR_2: Tetratricopept 86.5 1.9 4.1E-05 31.0 5.2 32 114-145 3-34 (34)
73 PF13371 TPR_9: Tetratricopept 85.2 3.1 6.7E-05 35.3 6.7 41 120-160 3-43 (73)
74 cd00189 TPR Tetratricopeptide 84.2 10 0.00022 31.2 9.4 73 84-157 7-79 (100)
75 PF12895 Apc3: Anaphase-promot 83.6 3.1 6.7E-05 36.7 6.2 70 90-160 2-72 (84)
76 PF00515 TPR_1: Tetratricopept 82.7 2.7 5.8E-05 30.5 4.5 32 114-145 3-34 (34)
77 PRK11189 lipoprotein NlpI; Pro 82.7 15 0.00032 40.7 12.3 86 59-146 81-166 (296)
78 PF04733 Coatomer_E: Coatomer 82.3 8 0.00017 43.0 10.1 98 58-160 147-249 (290)
79 PLN03088 SGT1, suppressor of 82.2 13 0.00029 42.4 12.1 74 85-159 10-83 (356)
80 cd00189 TPR Tetratricopeptide 81.3 12 0.00026 30.8 8.7 83 60-144 18-100 (100)
81 cd05804 StaR_like StaR_like; a 81.1 95 0.0021 34.4 20.3 134 14-155 19-157 (355)
82 PLN02789 farnesyltranstransfer 80.9 13 0.00029 41.9 11.3 77 79-156 38-116 (320)
83 PF03704 BTAD: Bacterial trans 80.4 7.5 0.00016 37.8 8.1 59 353-414 64-122 (146)
84 cd05804 StaR_like StaR_like; a 79.8 1E+02 0.0023 34.1 20.7 128 10-144 52-180 (355)
85 PF13181 TPR_8: Tetratricopept 79.6 3.7 8E-05 29.6 4.3 32 114-145 3-34 (34)
86 COG2976 Uncharacterized protei 79.3 4.9 0.00011 42.3 6.5 58 85-144 134-191 (207)
87 PRK10370 formate-dependent nit 79.0 33 0.00072 35.8 12.9 86 61-148 92-180 (198)
88 PF13414 TPR_11: TPR repeat; P 78.4 5.2 0.00011 33.5 5.5 46 367-412 16-62 (69)
89 KOG0495 HAT repeat protein [RN 78.2 1.9E+02 0.004 36.0 20.7 87 59-150 601-689 (913)
90 PRK15363 pathogenicity island 78.1 24 0.00051 36.0 10.9 83 76-160 34-117 (157)
91 KOG2376 Signal recognition par 77.5 1.8E+02 0.0039 35.6 30.9 127 9-149 20-147 (652)
92 PLN02789 farnesyltranstransfer 76.9 76 0.0016 35.9 15.8 115 36-158 71-188 (320)
93 COG3063 PilF Tfp pilus assembl 76.6 5.5 0.00012 42.9 6.1 72 353-424 34-106 (250)
94 PRK02603 photosystem I assembl 75.6 29 0.00062 34.9 10.9 78 82-159 40-119 (172)
95 KOG1129 TPR repeat-containing 74.5 30 0.00066 39.2 11.3 119 19-147 202-325 (478)
96 COG2956 Predicted N-acetylgluc 73.1 5.2 0.00011 45.0 5.1 66 349-414 175-240 (389)
97 COG3071 HemY Uncharacterized e 72.6 62 0.0013 37.5 13.4 125 2-140 264-389 (400)
98 KOG1173 Anaphase-promoting com 70.9 30 0.00066 41.6 10.8 71 77-148 455-525 (611)
99 KOG3060 Uncharacterized conser 70.5 57 0.0012 36.0 12.0 103 53-158 27-132 (289)
100 COG4235 Cytochrome c biogenesi 70.2 91 0.002 34.9 13.8 114 366-480 134-251 (287)
101 PF13424 TPR_12: Tetratricopep 70.2 22 0.00048 30.5 7.5 61 81-141 9-75 (78)
102 COG2956 Predicted N-acetylgluc 68.6 1.3E+02 0.0028 34.3 14.5 135 4-142 144-279 (389)
103 COG4783 Putative Zn-dependent 68.1 42 0.0009 39.8 11.1 84 76-160 339-422 (484)
104 PF13174 TPR_6: Tetratricopept 68.0 9.8 0.00021 26.9 4.1 29 116-144 4-32 (33)
105 PRK02603 photosystem I assembl 68.0 57 0.0012 32.8 11.1 77 79-156 74-164 (172)
106 PF09976 TPR_21: Tetratricopep 67.1 42 0.00091 32.8 9.7 64 347-413 44-110 (145)
107 TIGR03302 OM_YfiO outer membra 66.5 1.7E+02 0.0037 30.5 18.4 148 6-159 38-216 (235)
108 PF13431 TPR_17: Tetratricopep 66.4 7.3 0.00016 29.1 3.1 32 377-408 2-33 (34)
109 KOG2053 Mitochondrial inherita 65.1 35 0.00076 43.1 10.2 92 55-155 26-119 (932)
110 KOG1070 rRNA processing protei 63.7 1.2E+02 0.0026 40.5 14.7 146 12-159 1469-1647(1710)
111 KOG0495 HAT repeat protein [RN 62.8 3.9E+02 0.0085 33.4 32.2 45 368-412 733-777 (913)
112 PRK10803 tol-pal system protei 60.1 1.1E+02 0.0024 33.6 12.3 57 88-145 154-213 (263)
113 PF14853 Fis1_TPR_C: Fis1 C-te 56.3 27 0.00058 29.1 5.1 35 114-148 3-37 (53)
114 PF13176 TPR_7: Tetratricopept 53.9 22 0.00048 26.5 3.9 23 118-140 5-27 (36)
115 KOG4234 TPR repeat-containing 53.4 87 0.0019 33.6 9.3 27 118-144 140-166 (271)
116 KOG0553 TPR repeat-containing 53.3 49 0.0011 37.1 7.9 66 85-152 123-189 (304)
117 CHL00033 ycf3 photosystem I as 53.2 1.6E+02 0.0034 29.4 11.2 113 35-154 34-162 (168)
118 PRK10803 tol-pal system protei 53.0 1.1E+02 0.0025 33.5 10.9 70 77-146 180-251 (263)
119 PF12688 TPR_5: Tetratrico pep 52.6 1.2E+02 0.0026 29.4 9.8 70 84-153 8-80 (120)
120 KOG4626 O-linked N-acetylgluco 52.2 2.3E+02 0.005 35.1 13.5 37 123-159 297-333 (966)
121 KOG0553 TPR repeat-containing 51.6 44 0.00095 37.4 7.2 63 89-152 93-155 (304)
122 KOG4162 Predicted calmodulin-b 51.5 6.1E+02 0.013 32.2 22.0 50 363-413 730-779 (799)
123 CHL00033 ycf3 photosystem I as 51.2 1.3E+02 0.0028 30.0 10.2 70 83-152 41-112 (168)
124 COG5010 TadD Flp pilus assembl 48.3 60 0.0013 35.6 7.5 80 79-159 68-147 (257)
125 smart00386 HAT HAT (Half-A-TPR 48.1 38 0.00083 23.4 4.3 30 126-155 1-30 (33)
126 PRK14720 transcript cleavage f 46.4 4.5E+02 0.0097 34.2 15.8 146 4-157 119-268 (906)
127 PLN03098 LPA1 LOW PSII ACCUMUL 46.1 85 0.0018 37.2 8.8 71 76-147 74-147 (453)
128 KOG0547 Translocase of outer m 45.8 6.3E+02 0.014 30.6 16.5 84 321-412 478-561 (606)
129 PRK15180 Vi polysaccharide bio 45.6 39 0.00084 40.1 5.9 67 75-143 321-388 (831)
130 PRK10153 DNA-binding transcrip 44.8 5.9E+02 0.013 30.9 16.0 69 77-147 420-488 (517)
131 COG4700 Uncharacterized protei 44.8 89 0.0019 33.1 7.8 95 44-140 111-221 (251)
132 PF13428 TPR_14: Tetratricopep 44.4 42 0.0009 26.0 4.3 31 367-397 14-44 (44)
133 PF13512 TPR_18: Tetratricopep 43.0 1.9E+02 0.0042 29.0 9.7 78 76-155 9-94 (142)
134 PF13525 YfiO: Outer membrane 42.7 1.3E+02 0.0028 31.4 8.9 69 76-144 4-74 (203)
135 COG4235 Cytochrome c biogenesi 40.2 2.5E+02 0.0054 31.5 10.9 68 75-143 188-258 (287)
136 PF05843 Suf: Suppressor of fo 40.2 2.3E+02 0.0049 31.3 10.8 77 82-160 6-84 (280)
137 KOG3679 Predicted coiled-coil 39.8 94 0.002 35.6 7.6 130 236-408 529-666 (802)
138 smart00028 TPR Tetratricopepti 39.4 61 0.0013 20.9 4.1 29 117-145 6-34 (34)
139 PRK10866 outer membrane biogen 37.2 1.7E+02 0.0037 31.7 9.0 70 75-145 30-102 (243)
140 KOG1156 N-terminal acetyltrans 36.2 9.6E+02 0.021 30.0 24.1 87 56-152 25-115 (700)
141 KOG3081 Vesicle coat complex C 35.6 2.5E+02 0.0055 31.3 9.8 100 58-161 153-256 (299)
142 KOG1173 Anaphase-promoting com 33.3 1E+03 0.022 29.4 21.7 268 112-418 244-520 (611)
143 COG5010 TadD Flp pilus assembl 33.0 71 0.0015 35.1 5.2 46 367-412 113-158 (257)
144 KOG3785 Uncharacterized conser 32.1 58 0.0013 37.4 4.5 46 369-414 37-83 (557)
145 PRK11906 transcriptional regul 31.5 5.6E+02 0.012 30.7 12.5 110 36-147 297-407 (458)
146 KOG2003 TPR repeat-containing 31.2 2E+02 0.0044 34.1 8.6 64 94-159 643-707 (840)
147 KOG4234 TPR repeat-containing 31.1 1.6E+02 0.0034 31.7 7.1 70 76-148 130-204 (271)
148 PF12569 NARP1: NMDA receptor- 30.6 1.1E+03 0.023 28.8 27.7 46 366-411 469-514 (517)
149 PRK10941 hypothetical protein; 30.5 1.2E+02 0.0027 33.5 6.7 31 120-150 189-219 (269)
150 PF04840 Vps16_C: Vps16, C-ter 30.2 3.2E+02 0.007 31.0 10.1 102 9-137 185-287 (319)
151 PF12688 TPR_5: Tetratrico pep 29.6 1.4E+02 0.003 29.0 6.1 77 323-411 19-98 (120)
152 PF08424 NRDE-2: NRDE-2, neces 29.2 2.3E+02 0.005 31.9 8.8 49 369-417 46-94 (321)
153 PF13041 PPR_2: PPR repeat fam 28.5 1.5E+02 0.0032 23.4 5.2 37 120-156 11-48 (50)
154 PF13431 TPR_17: Tetratricopep 28.2 48 0.001 24.7 2.1 25 134-158 1-25 (34)
155 PF14938 SNAP: Soluble NSF att 27.6 8.3E+02 0.018 26.6 13.6 85 72-156 108-203 (282)
156 PF13525 YfiO: Outer membrane 27.3 7.1E+02 0.015 25.8 13.2 27 118-144 147-173 (203)
157 KOG0543 FKBP-type peptidyl-pro 26.6 5.3E+02 0.011 30.3 11.0 72 85-157 265-336 (397)
158 COG3629 DnrI DNA-binding trans 26.2 2.3E+02 0.0049 31.7 7.8 47 369-415 168-214 (280)
159 PF03704 BTAD: Bacterial trans 25.3 3.9E+02 0.0084 25.7 8.6 41 120-160 70-110 (146)
160 KOG1070 rRNA processing protei 25.2 1E+03 0.022 32.6 13.9 125 26-159 1449-1577(1710)
161 PF02259 FAT: FAT domain; Int 24.9 4.1E+02 0.0088 29.3 9.7 96 57-152 161-298 (352)
162 PRK11906 transcriptional regul 24.4 3.4E+02 0.0073 32.5 9.1 72 340-412 289-362 (458)
163 KOG1047 Bifunctional leukotrie 24.1 8.2E+02 0.018 30.1 12.1 50 371-420 500-550 (613)
164 PF09986 DUF2225: Uncharacteri 23.6 7.6E+02 0.016 26.3 11.0 124 254-413 54-190 (214)
165 KOG1127 TPR repeat-containing 23.0 5.9E+02 0.013 33.4 11.1 51 369-419 17-71 (1238)
166 PLN03098 LPA1 LOW PSII ACCUMUL 22.6 3E+02 0.0064 32.9 8.2 45 368-412 89-136 (453)
167 PF01402 RHH_1: Ribbon-helix-h 22.6 98 0.0021 23.3 3.0 30 620-649 4-33 (39)
168 PF10300 DUF3808: Protein of u 22.2 1.1E+03 0.023 28.2 13.0 134 22-157 205-350 (468)
169 KOG1128 Uncharacterized conser 22.1 3.3E+02 0.0072 34.2 8.6 69 90-159 498-566 (777)
170 KOG1126 DNA-binding cell divis 21.7 4.2E+02 0.0091 32.8 9.3 95 58-156 505-601 (638)
171 PRK15363 pathogenicity island 21.6 2.2E+02 0.0048 29.1 6.1 44 368-411 83-126 (157)
172 PF14561 TPR_20: Tetratricopep 20.7 2E+02 0.0043 26.4 5.1 38 374-411 8-45 (90)
173 PF07721 TPR_4: Tetratricopept 20.4 1.5E+02 0.0033 20.5 3.3 24 389-412 2-25 (26)
No 1
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-126 Score=1102.52 Aligned_cols=813 Identities=28% Similarity=0.353 Sum_probs=735.7
Q ss_pred chHHHHHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCch---hhHHHHHHHHHHHHhhcC-CCCch
Q 002692 2 DHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGG---EKLLLLAEGLLKKHVASH-SLHEP 77 (892)
Q Consensus 2 ELl~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~---~kLL~LA~kmleK~i~~~-~iet~ 77 (892)
|+++||||+|+|+++|++|||+||+|||.||+++||||+|||++||+..++++ .++++||+||+++++.++ ++++.
T Consensus 111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~ 190 (932)
T KOG2053|consen 111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE 190 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchH
Confidence 89999999999999999999999999999999999999999999999987653 477999999999999988 89999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 002692 78 EALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKL-RMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCL 156 (892)
Q Consensus 78 EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L-~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~ 156 (892)
+|+.||+.||+.||||+||++++.++++..++.....+ .++.++++++++|.+.++++.++|+.++|| |+-|+++.
T Consensus 191 aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd---y~~~~~sv 267 (932)
T KOG2053|consen 191 AEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD---YKIYTDSV 267 (932)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc---hHHHHHHH
Confidence 99999999999999999999999999998877654443 445599999999999999999999999999 66677776
Q ss_pred hcC-CCccccCCCCCCCCCCCcccccccCcchhhhhhcHHHHHHHHHHHhhccCCCCCchhHhHhchHHHHHhhhCCCCc
Q 002692 157 LED-DSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERRKLLYGKNNN 235 (892)
Q Consensus 157 ~el-~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~i~ea~~fi~~l~a~~~~~~~Rgp~LA~LEL~~Rl~~~G~~~~ 235 (892)
+++ ...|.++.+++.. +...+..+.+++++.+ +.+.||||||+||+.+|...-
T Consensus 268 ~klLe~~~~~~a~~~~s-----------------~~~~l~~~~ek~~~~i----~~~~Rgp~LA~lel~kr~~~~----- 321 (932)
T KOG2053|consen 268 FKLLELLNKEPAEAAHS-----------------LSKSLDECIEKAQKNI----GSKSRGPYLARLELDKRYKLI----- 321 (932)
T ss_pred HHHHHhcccccchhhhh-----------------hhhhHHHHHHHHHHhh----cccccCcHHHHHHHHHHhccc-----
Confidence 662 3334544433211 1224555556655544 347999999999999997443
Q ss_pred hHHHHHHHHHHHHcCCCcccHHhHHHHHhhcCHHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHHHHhcCccCCChH
Q 002692 236 DELMEAVLEYFLSFGHLACFTSDVEDFLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLVD 315 (892)
Q Consensus 236 ~~l~~~l~~Yf~kFg~KpcCF~DLk~Yl~~L~~ee~~~fl~~l~~~~~~~s~~~~k~L~~~In~~Kl~rllg~~~~ls~~ 315 (892)
++..+.+..||++||+|||||.|+++|+..++++++..|++.+....+. ++.+.+.++.|+|+.+++|++|.+..+|.+
T Consensus 322 gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~-~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad 400 (932)
T KOG2053|consen 322 GDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDD-SSGDEKVLQQHLCVLLLLRLLGLYEKLPAD 400 (932)
T ss_pred CChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCc-chhhHHHHHHHHHHHHHHHHhhccccCChH
Confidence 4677999999999999999999999999999999999999998764433 446789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCcccccchHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 002692 316 ELERSAVQMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLV 395 (892)
Q Consensus 316 ~~~~~v~~lv~~Y~~~l~l~~~l~~tE~qp~Del~LLAa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLi 395 (892)
+..+.+++|...|++++.+++++.|||+++||+|+++|++.|+++|++++|..++++||++||+++++||||||+|+||+
T Consensus 401 ~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLi 480 (932)
T KOG2053|consen 401 SILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHhCCchhHHHHhhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCChhhH
Q 002692 396 HLYSHLGALPLAYEWYKALDVKNILMETVSHHILPQMLVSSLWVESNNLLRDYLRFMDDHLRESADLTFLAYRHRNYSKV 475 (892)
Q Consensus 396 rLY~~LGa~s~A~~~y~~LdIK~IQ~DTLghlil~rlst~p~~~~~~~ll~~~lrfy~~s~ke~~d~I~~Afe~GsYSKI 475 (892)
|||++|||++.|.++|..|||||||+|||||++++++.++|.+..+.+.++.+++||+++.+|++|+|..||++|+||||
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI 560 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKI 560 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhh
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCchhhHHHHHhhhcccccccccccccCCCCccccccccCCCCCCCCCC
Q 002692 476 IEFVQFKERLQRSSQYLVARVESSILQLKQNANNIEEEESVLENLKCGVDFLELSNEIGSKSVTFNEDWQSRPWWTPTPD 555 (892)
Q Consensus 476 ~EfieF~eRL~~Sl~r~~~~vE~~rl~L~~~~~~~~e~~~~l~~L~~~~~~~~l~~ei~~~~LsDNRDf~vfp~w~p~~~ 555 (892)
+||+.|++||.+|.|++.+.||+++++++.+.++.++....++ +++....++.|+|.+|+|||||++||+|+|.+.
T Consensus 561 ~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~----~~~l~~~e~~I~w~~L~DNRDl~~~~~w~p~~e 636 (932)
T KOG2053|consen 561 PEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLE----SMKLPPSEDRIQWVSLSDNRDLNAIPYWDPEDE 636 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHh----ccccCcchhhcccccccccccccccccCCCcch
Confidence 9999999999999999999999999999999988877555555 344555677799999999999999999999988
Q ss_pred CCCCCCCccccccc-cchhhhHHHhhhHHHHHHhhhhhhHHHHHHhhccccccchhccccCcccCchhhhhHHHHHHHHH
Q 002692 556 KNYLLGPFAGISYC-PKENLMKEREANILGVVERKSLLPRLIYLSIQTASACVKENFEVNGSICDPKVSSELKYLLDRYA 634 (892)
Q Consensus 556 ~~~~l~p~~~~~~~-p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (892)
+ ..+| |||..++|++-+..+.+.+| |+|++|+++.++....+.+.+|.++ +..+..|++.++++|.
T Consensus 637 ~---------~~~e~~k~s~kEe~~~l~~rSi~lr-Ll~~~i~l~h~~~~k~~~~salt~~---~mevl~el~~ll~~~t 703 (932)
T KOG2053|consen 637 N---------FAEELKKESFKEETEWLNLRSIFLR-LLRELIILAHPNGEKDLEKSALTAK---VMEVLRELELLLEQYT 703 (932)
T ss_pred h---------hHHhhhhcChHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcchHHHHHhcc---chHHHHHHHHHHHHHH
Confidence 5 3445 77889999999998899999 9999999999999999999999888 8999999999999999
Q ss_pred HHhCcchhhhhHHHhhcccCccchhhhchhhhhHHHHHHHHHhhccCcccccccCCCCCCcchHHHHHHHHHHHHHHhhc
Q 002692 635 KMLGFSLRDAVEVVSGVSSGLNSSEAFGADMVGWLNFAVFLNAWNLSSHEVVLPDVNGCRHSTWQVVNTLLKKCILEVRS 714 (892)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (892)
+++|+|..++|++.+-.+.|++...-+++ ++|++||++..++. |++-.++++.|. +++
T Consensus 704 ~~~~~~~~~liq~~~~~~~~~r~g~l~~s--------~~f~~~~~~lv~~~------------~~~s~~l~e~~~--v~t 761 (932)
T KOG2053|consen 704 SVLIPSASFLIQFPLLESQGVRLGDLLNS--------LEFLMAVPLLVKDL------------WSVSHPLLELTK--VRT 761 (932)
T ss_pred HhhhhhhHHhhhhhhhccccccccchhhh--------HHHHHHHHHHHHHH------------HhccchHHHHHH--HHH
Confidence 99999999999999999999997765555 99999999998876 999999999998 444
Q ss_pred CCcc-ccccCccHHHHHHHhccchhHHHHHHHHHHhhcCCCCcccccCCCCC-CCCCcchhhHHhhHHhhhhHHHHHHHH
Q 002692 715 MESL-VCYPQLDLSVLVQLVTEPLAWHTLVMQSCVRSSLPSGKKKKRSGSAD-HSTSPLSHDIRGSVQSTSGVVEEVAKW 792 (892)
Q Consensus 715 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (892)
+..- +.++-.++++.||-.++|+.||-..+++|.+..+|++++++|...++ +..|++++|+.++|+-.| .+.+..|
T Consensus 762 ~i~t~l~s~~~~~~~~~q~~~~~~~w~~~~~~~k~~~sl~~~~~~l~~i~s~~L~~s~~~~av~~pvk~~~--~kk~~~~ 839 (932)
T KOG2053|consen 762 EIITDLISLLRIKDKEVQKEKLPLLWIVDGKLIKALQSLLSLYVFLKNIFSDKLKVSSVPTAVKEPVKLKG--DKKASVQ 839 (932)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCchhhhhHHHHhhHHHHHHHHHHHHHHHhhhhccccccccccchhhhhh--hhHHHHH
Confidence 4333 45566789999999999999999999999999999999999999999 777899999999999999 8999999
Q ss_pred HHhhhCCChhHHHHHHHHHHHhcCCCCCCchhHHhhhhhhhccchhhhhhhhhhhccCCChHHHHHHhhhhhhhHHHHHH
Q 002692 793 LGHHIKKSEDEKLDAIFSSLEANGRGEGPGQVFRLLGTLISSLNEAELGDRISQAMKSWSPVDVARKFVAGQRAGLSAFL 872 (892)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (892)
.-.++++||+.++..-+....+.+...+||+|..+++.+|+.-.+++.|.+|++++++ .++||.++.+..+..+++||+
T Consensus 840 ~~t~~~~~e~~~~~~el~~~~~~~~~n~~~~i~g~~~~~lal~~E~~ids~i~~~l~~-~~~d~~~k~~~~~~~~~~e~~ 918 (932)
T KOG2053|consen 840 AYTKLKKPECGQVLQELDRKLAENLSNIKNSILGYLKSFLALELESMIDSSIGPELEG-AKADVEGKHNPSASRLLREFL 918 (932)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHhhhhhhccccccchhhhh-hhHhHhhhcchHHHHHHHHHH
Confidence 9999999999999999988888888889999999999999999999999999999999 999999999999999999999
Q ss_pred HHhHHHHHHHHHHH
Q 002692 873 RICESKIKSLQALK 886 (892)
Q Consensus 873 ~~~~~~~~~~~~~~ 886 (892)
++|++|++..+.++
T Consensus 919 ~l~e~k~~~~~~lk 932 (932)
T KOG2053|consen 919 NLCEDKHTTIKKLK 932 (932)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987653
No 2
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=100.00 E-value=7.8e-66 Score=578.18 Aligned_cols=361 Identities=33% Similarity=0.520 Sum_probs=321.8
Q ss_pred HHHHHHHHHhhhcCCCccccCCCCCCCCCCCcccccccCcchhhhhhcHHHHHHHHHHHhh--ccCCCCCchhHhHhchH
Q 002692 146 WECFLHYLGCLLEDDSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHA--DTSVNLIRCPYLANLEI 223 (892)
Q Consensus 146 W~~w~~yLda~~el~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~i~ea~~fi~~l~a--~~~~~~~Rgp~LA~LEL 223 (892)
|++|+.||+|+++++.. ....+++..|++.+++ ...+++.|||+||+||+
T Consensus 1 W~~w~~~i~s~~~l~~~----------------------------~~~~~~~~~~~~~l~~~~~~~~~~~R~p~LA~lel 52 (365)
T PF09797_consen 1 WDVWKLLIDSAFELGKS----------------------------EEELEDVQEFLESLQAESSQSNPKSRGPYLARLEL 52 (365)
T ss_pred ChHHHHHHHHHHHhCCC----------------------------hhhHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHH
Confidence 99999999999988420 1235566667776664 34678999999999999
Q ss_pred HHHHhhhCCC-CchHHHHHHHHHHHHcCCCcccHHhHHHHHhhcCHHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHH
Q 002692 224 ERRKLLYGKN-NNDELMEAVLEYFLSFGHLACFTSDVEDFLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKI 302 (892)
Q Consensus 224 ~~Rl~~~G~~-~~~~l~~~l~~Yf~kFg~KpcCF~DLk~Yl~~L~~ee~~~fl~~l~~~~~~~s~~~~k~L~~~In~~Kl 302 (892)
.+|+...|.. ...++.+.|.+||++||+|||||.||++|++.|+++++.+|++.+.+.+......+.+.++++||++|+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~l~~Y~~~f~~K~cCf~DL~~Y~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~in~~kl 132 (365)
T PF09797_consen 53 AKRLRERGDAPDEEDLLELLEEYFDKFGSKPCCFDDLKPYLESLDPEERKELLEKLLEKIEADSKEDIKQLIRHINALKL 132 (365)
T ss_pred HHHHHhccCCccchhHHHHHHHHHHHhCCCCEeHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHH
Confidence 9998887766 667899999999999999999999999999999999999999999887655445677899999999999
Q ss_pred HHHhcCccCCChHHHHHHHHHHHHHHHhhCCCCCCCCCCcccccchHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 002692 303 QELIGNTYKLLVDELERSAVQMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLT 382 (892)
Q Consensus 303 ~rllg~~~~ls~~~~~~~v~~lv~~Y~~~l~l~~~l~~tE~qp~Del~LLAa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~ 382 (892)
+|++|.+..++.++..+++.++++.|+++++++.+++ ||.+|+|+|+++|+++|++.|..+++.++|++|+.+||++++
T Consensus 133 ~r~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~l~-te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~ 211 (365)
T PF09797_consen 133 SRFLGLHFSLSSESLLDLAQELLKLYQESLSLGKDLK-TESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALK 211 (365)
T ss_pred HHHhcccccCChhhHHHHHHHHHHHHHhhCccccccc-cccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999888999999999999999996666 999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHcCChHHHHHHHHhCCchhHHHHhhhhhhhhhhhcccchhhhH-HHHHHHHHHHHHhhhhHHH
Q 002692 383 VRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNILMETVSHHILPQMLVSSLWVESN-NLLRDYLRFMDDHLRESAD 461 (892)
Q Consensus 383 kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~LdIK~IQ~DTLghlil~rlst~p~~~~~~-~ll~~~lrfy~~s~ke~~d 461 (892)
+|||||++||||||||++||++++|.++|..|||||||+|||||++++|+++.+++.... +.++++++||.++.+++++
T Consensus 212 ~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e 291 (365)
T PF09797_consen 212 KSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENALKFYDNSEKETPE 291 (365)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876666665 8899999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCchhhHHHHHhhhcccccccccccccCCCCcccc
Q 002692 462 LTFLAYRHRNYSKVIEFVQFKERLQRSSQYLVARVESSILQLKQNANNIEEEESVLENLKCGVDFLELSNEIGSKSVTFN 541 (892)
Q Consensus 462 ~I~~Afe~GsYSKI~EfieF~eRL~~Sl~r~~~~vE~~rl~L~~~~~~~~e~~~~l~~L~~~~~~~~l~~ei~~~~LsDN 541 (892)
+++.||++|+|+||+||++|++||++|++++++.+|.+|++++.+.+..+..+.+.+ +..+.+++++++||
T Consensus 292 ~i~~af~~gsysKi~ef~~F~~rL~~S~~~~~~~~E~~~l~~~~~~~~~~~~~~l~~---------~~~~~~~~~~l~DN 362 (365)
T PF09797_consen 292 FIIKAFENGSYSKIEEFIEFRERLRNSLQRAMSRIERLRLSRLLGDKRFEELEYLVQ---------EDEDRIDWKTLSDN 362 (365)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHhh---------hhhcccccccCccC
Confidence 999999999999999999999999999999999999999999876654444334443 11233678899999
Q ss_pred ccc
Q 002692 542 EDW 544 (892)
Q Consensus 542 RDf 544 (892)
|||
T Consensus 363 RDf 365 (365)
T PF09797_consen 363 RDF 365 (365)
T ss_pred CCC
Confidence 998
No 3
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.85 E-value=1.9e-18 Score=201.65 Aligned_cols=335 Identities=19% Similarity=0.235 Sum_probs=247.1
Q ss_pred HHHHHHH-HHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 002692 78 EALIVYI-SILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCL 156 (892)
Q Consensus 78 EEl~LY~-~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~ 156 (892)
.|++||- +||+.+|++++||++|+..-. .+......+..+|+++.++|++++|...|+.||..|||||.+|..|..+.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3777777 999999999999999987533 35556667888999999999999999999999999999999999999987
Q ss_pred hcCCCccccCCCCCCCCCCCcccccccCcchhhhhhcHHHHHHHHHHHhhccCCCCCchhHhHhchHHHHHhhhCCCCch
Q 002692 157 LEDDSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERRKLLYGKNNND 236 (892)
Q Consensus 157 ~el~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~i~ea~~fi~~l~a~~~~~~~Rgp~LA~LEL~~Rl~~~G~~~~~ 236 (892)
.-... ++ +...+...++++++.+ .++|+.. .+|+++. ...++
T Consensus 83 g~~~~-----------------------~~----~~~~~~~~~~y~~l~~----~yp~s~~------~~rl~L~-~~~g~ 124 (517)
T PF12569_consen 83 GLQLQ-----------------------LS----DEDVEKLLELYDELAE----KYPRSDA------PRRLPLD-FLEGD 124 (517)
T ss_pred hhhcc-----------------------cc----cccHHHHHHHHHHHHH----hCccccc------hhHhhcc-cCCHH
Confidence 32100 00 1134566677777763 4556553 3444432 23457
Q ss_pred HHHHHHHHHHHHcCCC--cccHHhHHHHHhhcCHHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHHHHhcCccCCCh
Q 002692 237 ELMEAVLEYFLSFGHL--ACFTSDVEDFLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLV 314 (892)
Q Consensus 237 ~l~~~l~~Yf~kFg~K--pcCF~DLk~Yl~~L~~ee~~~fl~~l~~~~~~~s~~~~k~L~~~In~~Kl~rllg~~~~ls~ 314 (892)
+|...+..|+..+-.| |+-|.|||+... +..+.
T Consensus 125 ~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~---d~~K~------------------------------------------ 159 (517)
T PF12569_consen 125 EFKERLDEYLRPQLRKGVPSLFSNLKPLYK---DPEKA------------------------------------------ 159 (517)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHc---ChhHH------------------------------------------
Confidence 8999999999999988 999999999653 21222
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCC--cccccchHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCchHHHH
Q 002692 315 DELERSAVQMSEMYCKSLPLSKDLDPQ--ESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKV 392 (892)
Q Consensus 315 ~~~~~~v~~lv~~Y~~~l~l~~~l~~t--E~qp~Del~LLAa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkL 392 (892)
..+.+++..|.+.+......+.. +........+++.++|.++|...++. -+|+..++.++.++|+..++.+
T Consensus 160 ----~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~---~~Al~~Id~aI~htPt~~ely~ 232 (517)
T PF12569_consen 160 ----AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY---EKALEYIDKAIEHTPTLVELYM 232 (517)
T ss_pred ----HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhcCCCcHHHHH
Confidence 23334444554443322211111 11222344677888999998765654 4999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHH---hCCchhH------------------HHHhhhhhhhhhhhccc-------ch------
Q 002692 393 LLVHLYSHLGALPLAYEWYK---ALDVKNI------------------LMETVSHHILPQMLVSS-------LW------ 438 (892)
Q Consensus 393 lLirLY~~LGa~s~A~~~y~---~LdIK~I------------------Q~DTLghlil~rlst~p-------~~------ 438 (892)
+.+|||.+.|.+..|.+.++ .||..+. -.++++-++-+...... .|
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH
Confidence 99999999999999998754 7885544 24677776555421111 01
Q ss_pred ---------hhhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002692 439 ---------VESNNLLRDYLRFMDDHLRESADLTFLAYRHRNYSKVIEFVQFKERLQRSSQYLVARVESSILQL 503 (892)
Q Consensus 439 ---------~~~~~ll~~~lrfy~~s~ke~~d~I~~Afe~GsYSKI~EfieF~eRL~~Sl~r~~~~vE~~rl~L 503 (892)
+.+-..+..+.++|.+...|..||+..|+|+|++..+.+|++|.++|..+..+.-+..-.+++-+
T Consensus 313 ~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl 386 (517)
T PF12569_consen 313 EAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYL 386 (517)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 12334677888999999999999999999999999999999999999999999988888777654
No 4
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.68 E-value=1e-13 Score=159.62 Aligned_cols=329 Identities=18% Similarity=0.242 Sum_probs=234.9
Q ss_pred HHHHHH-HHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 002692 79 ALIVYI-SILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLL 157 (892)
Q Consensus 79 El~LY~-~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~ 157 (892)
|..||- .|+.+.|..++|++.+...-. .+.........++.++.++++.++|..+|+.+|..|||||++|..|..|++
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNEK-QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhhh-HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 677776 999999999999999975432 233333345668899999999999999999999999999999999999986
Q ss_pred cCCCccccCCCCCCCCCCCcccccccCcchhhhhhcHHHHHHHHHHHhhccCCCCCchhHhHhchHHHHHhhhCCCCchH
Q 002692 158 EDDSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERRKLLYGKNNNDE 237 (892)
Q Consensus 158 el~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~i~ea~~fi~~l~a~~~~~~~Rgp~LA~LEL~~Rl~~~G~~~~~~ 237 (892)
+... ..+.....+..+ ...++|..-+-|+-+. ...+++
T Consensus 265 k~~d-------------------------------~~~~lk~ly~~l----s~~y~r~e~p~Rlpls-------vl~~ee 302 (700)
T KOG1156|consen 265 KIKD-------------------------------MLEALKALYAIL----SEKYPRHECPRRLPLS-------VLNGEE 302 (700)
T ss_pred HHhh-------------------------------hHHHHHHHHHHH----hhcCcccccchhccHH-------HhCcch
Confidence 3210 112222333433 3456777654444333 233478
Q ss_pred HHHHHHHHHHHcCCC--cccHHhHHHHHhhcCHHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHHHHhcCccCCChH
Q 002692 238 LMEAVLEYFLSFGHL--ACFTSDVEDFLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLVD 315 (892)
Q Consensus 238 l~~~l~~Yf~kFg~K--pcCF~DLk~Yl~~L~~ee~~~fl~~l~~~~~~~s~~~~k~L~~~In~~Kl~rllg~~~~ls~~ 315 (892)
+.+.+..|...--.| |..|.||+++.+ .+ ++..|
T Consensus 303 l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk--~p-~k~~~----------------------------------------- 338 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPSVFKDLRSLYK--DP-EKVAF----------------------------------------- 338 (700)
T ss_pred hHHHHHHHHHHHhhcCCCchhhhhHHHHh--ch-hHhHH-----------------------------------------
Confidence 999999999999999 999999999763 11 12223
Q ss_pred HHHHHHHHHHHHHHhhCCCCCC---CCCCcccccchHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCchHHHH
Q 002692 316 ELERSAVQMSEMYCKSLPLSKD---LDPQESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKV 392 (892)
Q Consensus 316 ~~~~~v~~lv~~Y~~~l~l~~~---l~~tE~qp~Del~LLAa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkL 392 (892)
+++++..|.+.+.-.+- .+.....| ..-+++...+|.++|-. .+.+-.|...|+-++.++|+-+++-+
T Consensus 339 -----le~Lvt~y~~~L~~~~~f~~~D~~~~E~-PttllWt~y~laqh~D~---~g~~~~A~~yId~AIdHTPTliEly~ 409 (700)
T KOG1156|consen 339 -----LEKLVTSYQHSLSGTGMFNFLDDGKQEP-PTTLLWTLYFLAQHYDK---LGDYEVALEYIDLAIDHTPTLIELYL 409 (700)
T ss_pred -----HHHHHHHHHhhcccccCCCcccccccCC-chHHHHHHHHHHHHHHH---cccHHHHHHHHHHHhccCchHHHHHH
Confidence 34444455444432211 11111122 22356677888888765 34667899999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHH---hCCchhH------------------HHHhhhhhhhhhhhccc-------chh-----
Q 002692 393 LLVHLYSHLGALPLAYEWYK---ALDVKNI------------------LMETVSHHILPQMLVSS-------LWV----- 439 (892)
Q Consensus 393 lLirLY~~LGa~s~A~~~y~---~LdIK~I------------------Q~DTLghlil~rlst~p-------~~~----- 439 (892)
.-+|||.+.|..+.|..++. .||.-++ -..+++-++..+..... +|.
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g 489 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDG 489 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhh
Confidence 99999999999999998765 6775444 23455554443321111 121
Q ss_pred ----------hhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002692 440 ----------ESNNLLRDYLRFMDDHLRESADLTFLAYRHRNYSKVIEFVQFKERLQRSSQYLVARVESSILQL 503 (892)
Q Consensus 440 ----------~~~~ll~~~lrfy~~s~ke~~d~I~~Afe~GsYSKI~EfieF~eRL~~Sl~r~~~~vE~~rl~L 503 (892)
.+-..+..+.+||.+...|..||++.|++.|++..+.|+++|.++|+.+..+.-++...+.+-+
T Consensus 490 ~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl 563 (700)
T KOG1156|consen 490 EAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYL 563 (700)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 1223466778899999999999999999999999999999999999999999998888886544
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.95 E-value=0.021 Score=69.81 Aligned_cols=29 Identities=14% Similarity=-0.047 Sum_probs=18.7
Q ss_pred HHHHHHHhhhcHHHHHHHHHHhHhhhCCC
Q 002692 6 GLFNCYVREYSFVKQQQTAIKMYKHAGEE 34 (892)
Q Consensus 6 ~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~ 34 (892)
.+-..+...+++..+.+..-++.+..|++
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 532 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKN 532 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCc
Confidence 33445667777777777666666666655
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.88 E-value=0.075 Score=65.02 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHhC
Q 002692 369 YFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 414 (892)
Q Consensus 369 ~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~L 414 (892)
..-+|+..++..+...|.+......++.+|..+|....|.++|+.+
T Consensus 751 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999754
No 7
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.42 E-value=0.039 Score=67.72 Aligned_cols=309 Identities=16% Similarity=0.180 Sum_probs=165.4
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhccc-chhcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002692 60 LAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGS-LLVIEVDKLRMQGRLLARQGDYTAAAQIYKKI 138 (892)
Q Consensus 60 LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~-~l~~~~e~L~Lka~lL~klg~weea~~~~k~L 138 (892)
=|++++...|...+ ..++...-...|.+.+|+.+.++.+--- +. +-+...+.|...+++.+++|+|..|.-+|-+.
T Consensus 157 eA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~ll--AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 157 EAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLL--AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHH--HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45555555554444 3455666667999999999888765531 11 22344578888899999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHhhhcCCCccccCCCCCCCCCCCcccccccCcchhhhhhcHHHHHHHHHHHhhccCCCCCchhHh
Q 002692 139 LELSPDDWECFLHYLGCLLEDDSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHADTSVNLIRCPYL 218 (892)
Q Consensus 139 Le~npDDW~~w~~yLda~~el~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~i~ea~~fi~~l~a~~~~~~~Rgp~L 218 (892)
|..+|+||.++-....-..+.+. ....+..|.+=++-.......|.--+
T Consensus 234 I~~~p~n~~~~~ers~L~~~~G~-------------------------------~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 234 IQANPSNWELIYERSSLYQKTGD-------------------------------LKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred HhcCCcchHHHHHHHHHHHHhCh-------------------------------HHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 99999999998777665554431 12223334332221010111222222
Q ss_pred HhchHHHHHhhhCCCCchHHHHHHHHHHHHcCCCcccHHhHHHHHhhc-CHHHHHHHHHHHHhccC----CC--------
Q 002692 219 ANLEIERRKLLYGKNNNDELMEAVLEYFLSFGHLACFTSDVEDFLLVL-SLDKKTELLERLKSSST----SH-------- 285 (892)
Q Consensus 219 A~LEL~~Rl~~~G~~~~~~l~~~l~~Yf~kFg~KpcCF~DLk~Yl~~L-~~ee~~~fl~~l~~~~~----~~-------- 285 (892)
++.-+. --..++ +.+.....+..|+.+-++-..| .|+--|.+.+ ...+-...+..+...+. ..
T Consensus 283 i~~~~~-~~~~~~--~~e~a~~~le~~~s~~~~~~~~-ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 283 IRRVAH-YFITHN--ERERAAKALEGALSKEKDEASL-EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHH-HHHHhh--HHHHHHHHHHHHHhhccccccc-cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 211111 001111 1244567777777766666666 6676676654 22232222233322211 00
Q ss_pred -------C--------chhhhHHHHHHHHHHHHHH--h------cCccCCChHHHHHHHHHHHHHHHh------hCCCCC
Q 002692 286 -------S--------TESIKELGWFITLKKIQEL--I------GNTYKLLVDELERSAVQMSEMYCK------SLPLSK 336 (892)
Q Consensus 286 -------s--------~~~~k~L~~~In~~Kl~rl--l------g~~~~ls~~~~~~~v~~lv~~Y~~------~l~l~~ 336 (892)
+ +.+.+.++..||.+.+.-. . -.....++++..++..++.++|-. ++++..
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 0 0011222333333322200 0 000112233444455555444422 222211
Q ss_pred CCCCCcc-cccchHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHhC
Q 002692 337 DLDPQES-IHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 414 (892)
Q Consensus 337 ~l~~tE~-qp~Del~LLAa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~L 414 (892)
-+-..+. +.+.-+. .-+.++.+ .+.--+|+..-|.+|.-.|.|.+.|+-|.-||..+|..+.|++....+
T Consensus 439 ~i~~~~~~~~~~vw~-~~a~c~~~-------l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 439 PITNREGYQNAFVWY-KLARCYME-------LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHhcCccccchhhhH-HHHHHHHH-------HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 1111111 1111111 22233332 345577888899999999999999999999999999999998877654
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.38 E-value=0.32 Score=59.84 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=69.8
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002692 61 AEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILE 140 (892)
Q Consensus 61 A~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe 140 (892)
|..++...+...+ ...+-+.+....+..+|++++|++.++.-+. .-+...+-+...+.++...|++++|.+.+++.+.
T Consensus 61 A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~-~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 61 GLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLA-VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred hHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444343 3455666666666778999999999986432 1233344566678889999999999999999999
Q ss_pred hCCCCHHHHHHHHHhhhcC
Q 002692 141 LSPDDWECFLHYLGCLLED 159 (892)
Q Consensus 141 ~npDDW~~w~~yLda~~el 159 (892)
.+|++-..|..+..+....
T Consensus 139 l~P~~~~a~~~la~~l~~~ 157 (656)
T PRK15174 139 AFSGNSQIFALHLRTLVLM 157 (656)
T ss_pred hCCCcHHHHHHHHHHHHHC
Confidence 9999999998887776543
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.34 E-value=0.089 Score=63.92 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHh
Q 002692 368 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 413 (892)
Q Consensus 368 ~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~ 413 (892)
+.+-+|+.+++.++..+|.+....+.+.++|..+|....|.+.|+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999875
No 10
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.21 E-value=0.32 Score=62.86 Aligned_cols=83 Identities=14% Similarity=0.096 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Q 002692 76 EPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSP-DDWECFLHYLG 154 (892)
Q Consensus 76 t~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~np-DDW~~w~~yLd 154 (892)
+....-..+..+.+.|+.++|.++++.=....+.....-+..-...+.+.|++++|.+++..+...+. -|..+|..+|.
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33334444455555566666665554311111111111112222445556666666666665555321 23445555555
Q ss_pred hhhc
Q 002692 155 CLLE 158 (892)
Q Consensus 155 a~~e 158 (892)
+..+
T Consensus 551 a~~k 554 (1060)
T PLN03218 551 ACGQ 554 (1060)
T ss_pred HHHH
Confidence 5544
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.18 E-value=0.36 Score=63.22 Aligned_cols=46 Identities=11% Similarity=-0.013 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHh
Q 002692 368 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 413 (892)
Q Consensus 368 ~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~ 413 (892)
+.+-+|+..++.++..+|.+....+.+..+|...|....|.++|+.
T Consensus 365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999974
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.13 E-value=0.41 Score=62.72 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHhC
Q 002692 368 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 414 (892)
Q Consensus 368 ~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~L 414 (892)
+..-+|+..++.++..+|.|.+.++-++++|...|....|.+.|+.+
T Consensus 617 g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888743
No 13
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.12 E-value=1.7 Score=56.36 Aligned_cols=327 Identities=11% Similarity=0.054 Sum_probs=169.9
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHH--HHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHH
Q 002692 4 MMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCS--IQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALI 81 (892)
Q Consensus 4 l~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS--~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~ 81 (892)
...+|..+.|.|++..+.++--.|.+.- ..-|..+. .++.+....+ ...-|.++...+.. .+....-
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~g----vv~~~~v~~~~li~~~~~~g---~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRG----LLDMDKIYHAKFFKACKKQR---AVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCC----CCCchHHHHHHHHHHHHHCC---CHHHHHHHHHHcCC----CCHHHHH
Confidence 4578889999999988777665554432 22233221 1111111111 12233344433321 3444555
Q ss_pred HHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHhhhcCC
Q 002692 82 VYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPD-DWECFLHYLGCLLEDD 160 (892)
Q Consensus 82 LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npD-DW~~w~~yLda~~el~ 160 (892)
..+..+...|++++|.+++..-...-+.....-...-...+.+.|+.++|.+++.++...+.. |-.+|..+|++..+.+
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 566777888999999998874211111111112222336788999999999999999987643 7788999998876542
Q ss_pred CccccCCCCCCCCCCCcccccccCcchhhhhhcHHHHHHHHHHHhhccCCCCCchhHhHhchHHHHHhhhCCCCchHHHH
Q 002692 161 SSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERRKLLYGKNNNDELME 240 (892)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~i~ea~~fi~~l~a~~~~~~~Rgp~LA~LEL~~Rl~~~G~~~~~~l~~ 240 (892)
..++|..+++++.+ ..-.+..-.|-+.+....+ .|. + +
T Consensus 522 --------------------------------~~eeAl~lf~~M~~-~Gv~PD~vTYnsLI~a~~k---~G~-----~-d 559 (1060)
T PLN03218 522 --------------------------------QVAKAFGAYGIMRS-KNVKPDRVVFNALISACGQ---SGA-----V-D 559 (1060)
T ss_pred --------------------------------CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH---CCC-----H-H
Confidence 25567777777652 2222233444444444332 121 1 1
Q ss_pred HHHHHHHHcCC-CcccHHhHHHHHhhc-------CHHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHHHHhcCccCC
Q 002692 241 AVLEYFLSFGH-LACFTSDVEDFLLVL-------SLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKL 312 (892)
Q Consensus 241 ~l~~Yf~kFg~-KpcCF~DLk~Yl~~L-------~~ee~~~fl~~l~~~~~~~s~~~~k~L~~~In~~Kl~rllg~~~~l 312 (892)
...+.|+..-. +.-+..|...|-..+ ..++..++.+.+.+.--..+...-..+ |.. ++ ..
T Consensus 560 eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL---I~a-----y~-k~--- 627 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA---VNS-----CS-QK--- 627 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH---HHH-----HH-hc---
Confidence 12222222211 111223433343222 234444555555432100000000111 111 00 00
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCCCCcccccchHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcC-CCchHHH
Q 002692 313 LVDELERSAVQMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVR-RHAWQYK 391 (892)
Q Consensus 313 s~~~~~~~v~~lv~~Y~~~l~l~~~l~~tE~qp~Del~LLAa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kS-P~N~~lk 391 (892)
....+..+.|.+....+ ..| |. .+.+.|++.+.+.+ .+-+|..+++...+.. +-+....
T Consensus 628 ------G~~deAl~lf~eM~~~G-------v~P-D~---~TynsLI~a~~k~G---~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 628 ------GDWDFALSIYDDMKKKG-------VKP-DE---VFFSALVDVAGHAG---DLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred ------CCHHHHHHHHHHHHHcC-------CCC-CH---HHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHH
Confidence 01122334444332211 111 11 23355666665544 5667888888877664 4567788
Q ss_pred HHHHHHHHHcCChHHHHHHHHhCC
Q 002692 392 VLLVHLYSHLGALPLAYEWYKALD 415 (892)
Q Consensus 392 LlLirLY~~LGa~s~A~~~y~~Ld 415 (892)
-.|+..|+..|....|.+.|+.+.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 899999999999999999998764
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.11 E-value=0.8 Score=56.46 Aligned_cols=133 Identities=11% Similarity=0.103 Sum_probs=94.5
Q ss_pred HHHHhhhcHHHHHHHHHHhHhhhCCCc--cHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 002692 9 NCYVREYSFVKQQQTAIKMYKHAGEER--FLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISI 86 (892)
Q Consensus 9 ~ayvR~~d~kkqQQ~AmkL~K~f~~~r--Y~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~~I 86 (892)
..+.+.|++..++..+-..-...|... .+.+.+.-. + .+. ..-|...+++.+...| .+++-......+
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l--~--~g~-----~~~A~~~l~~~l~~~P-~~~~a~~~la~~ 119 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPL--A--SSQ-----PDAVLQVVNKLLAVNV-CQPEDVLLVASV 119 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHh--h--cCC-----HHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 467788999999998888888888774 555553332 2 111 2245566666665555 345556666789
Q ss_pred HHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002692 87 LEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHY 152 (892)
Q Consensus 87 Le~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~y 152 (892)
+..+|++++|++.+..-+.. -+.....+...+.++...|++++|...++.++..+|++=..+...
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~ 184 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC 184 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999865431 122334455667889999999999999999999999887766543
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.98 E-value=1.8 Score=54.26 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=98.2
Q ss_pred hHHHHHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHH
Q 002692 3 HMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIV 82 (892)
Q Consensus 3 Ll~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~L 82 (892)
.+..|-.-+...|++..+.++.-+.....|.... .|......+.... -..-|...++++++..| .+++-...
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~-~~~~lA~~~~~~g------~~~~A~~~~~~al~~~P-~~~~a~~~ 88 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHMQLPAR-GYAAVAVAYRNLK------QWQNSLTLWQKALSLEP-QNDDYQRG 88 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcC------CHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 3456777788888888888776666553444432 2333333332221 12345566666655444 34545556
Q ss_pred HHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 002692 83 YISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLL 157 (892)
Q Consensus 83 Y~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~ 157 (892)
...++..+|++++|++.+..-+.. -+...+ +...+.++...|+.++|...++++++.+|++-..+..+..+..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 668888999999999999875432 333344 6667888999999999999999999999999888887766554
No 16
>PLN03077 Protein ECB2; Provisional
Probab=96.96 E-value=0.95 Score=57.29 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHhCCchhHHHHhhhhh
Q 002692 355 NVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNILMETVSHH 427 (892)
Q Consensus 355 ~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~LdIK~IQ~DTLghl 427 (892)
+.|++.|.+.+ .+-+|..+.+.. +.|...--.++.-|...|....|.++|+.+.-+.+.-|...|.
T Consensus 528 naLi~~y~k~G---~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 528 NALLDLYVRCG---RMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred hHHHHHHHHcC---CHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 56677776655 344455555543 3444455566777888888888888887655444444555544
No 17
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.90 E-value=0.32 Score=56.20 Aligned_cols=98 Identities=22% Similarity=0.165 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhcCCCCchHH-HHHHHHHHHHcCChhHHHHHHhhhcccchhcHH-HHHHHHHHHHHHcCCHHHHHHHH
Q 002692 58 LLLAEGLLKKHVASHSLHEPEA-LIVYISILEQQSKYGDALEILSGTLGSLLVIEV-DKLRMQGRLLARQGDYTAAAQIY 135 (892)
Q Consensus 58 L~LA~kmleK~i~~~~iet~EE-l~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~-e~L~Lka~lL~klg~weea~~~~ 135 (892)
...|++.+.+..... +++.- ..+-..+...+|+++++.+.+..-.. ..+... ......++++...|++++|.+..
T Consensus 100 ~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~-~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 100 YAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAE-LAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred HHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 456777777764432 23322 23334888889999999999986321 112111 11223478889999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHhhhc
Q 002692 136 KKILELSPDDWECFLHYLGCLLE 158 (892)
Q Consensus 136 k~LLe~npDDW~~w~~yLda~~e 158 (892)
+.+++.+|+|-..+..+.....+
T Consensus 177 ~~l~~~~P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 177 DKLLEMAPRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999888877776654
No 18
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.73 E-value=0.1 Score=64.43 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=48.7
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHhCCchhHH
Q 002692 355 NVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNIL 420 (892)
Q Consensus 355 ~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~LdIK~IQ 420 (892)
..|+..+...+ .+-.|..+.+..+...|.+......|+.+|...|-.+.|.++++.|.-|.+.
T Consensus 498 ~~Ll~a~~~~g---~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 498 AALLTACRIHK---NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHcC---CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 45555554444 3445666678888889999888899999999999999999999887666553
No 19
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.66 E-value=0.72 Score=53.30 Aligned_cols=122 Identities=17% Similarity=0.112 Sum_probs=81.1
Q ss_pred HHhhhcHHHHHHHHHHhHhhhCCC-ccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHH-HHHHHH
Q 002692 11 YVREYSFVKQQQTAIKMYKHAGEE-RFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIV-YISILE 88 (892)
Q Consensus 11 yvR~~d~kkqQQ~AmkL~K~f~~~-rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~L-Y~~ILe 88 (892)
....|||..+.+.+.+..+..|.+ .|+..+...-. .... ..-|.+.+.++.+..+-... .+.+ +.+++-
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~--~~g~------~~~A~~~l~~a~~~~p~~~l-~~~~~~a~l~l 164 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQ--QRGD------EARANQHLEEAAELAGNDNI-LVEIARTRILL 164 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH--HCCC------HHHHHHHHHHHHHhCCcCch-HHHHHHHHHHH
Confidence 456899999999998888877765 35554444322 2211 12344445554433332222 3444 689999
Q ss_pred HcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002692 89 QQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELS 142 (892)
Q Consensus 89 ~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~n 142 (892)
.+|++++|++.++.-+. .-+..+.-+++.+.++.+.|+|+++.+....+++.+
T Consensus 165 ~~~~~~~Al~~l~~l~~-~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 165 AQNELHAARHGVDKLLE-MAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 99999999999875322 224444567777899999999999999999999763
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.49 E-value=3 Score=50.82 Aligned_cols=74 Identities=12% Similarity=0.045 Sum_probs=56.0
Q ss_pred HHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 002692 84 ISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 159 (892)
Q Consensus 84 ~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el 159 (892)
...+-.+|+|++|++..+.-+.. .+. .....-++.++.++|+|++|.+.|.+.|+.+|++...|...-.+...+
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~-~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC-KPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc-CCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 35666779999999999864321 122 233445678899999999999999999999999999887766555544
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.47 E-value=2.1 Score=48.11 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=68.3
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccc-hhcH--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002692 61 AEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSL-LVIE--VDKLRMQGRLLARQGDYTAAAQIYKK 137 (892)
Q Consensus 61 A~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~-l~~~--~e~L~Lka~lL~klg~weea~~~~k~ 137 (892)
|...+.+++...+ .+.+-......++..+|++++|++.++.-+... .... ...+...+..+.+.|++++|..++++
T Consensus 54 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 132 (389)
T PRK11788 54 AIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQ 132 (389)
T ss_pred HHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666665444 344445555688899999999999887533321 1111 12234456788899999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhhc
Q 002692 138 ILELSPDDWECFLHYLGCLLE 158 (892)
Q Consensus 138 LLe~npDDW~~w~~yLda~~e 158 (892)
+++.+|++...+..+.....+
T Consensus 133 ~l~~~~~~~~~~~~la~~~~~ 153 (389)
T PRK11788 133 LVDEGDFAEGALQQLLEIYQQ 153 (389)
T ss_pred HHcCCcchHHHHHHHHHHHHH
Confidence 999999998888877766544
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.31 E-value=5 Score=50.85 Aligned_cols=93 Identities=11% Similarity=0.145 Sum_probs=63.8
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002692 60 LAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKIL 139 (892)
Q Consensus 60 LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LL 139 (892)
-|...+.++.+..|- ++..+.-++.++-..|++++|+..++..+ ..-+.....+...+.++...|+|++|.+++++++
T Consensus 52 ~Al~~L~qaL~~~P~-~~~av~dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL 129 (822)
T PRK14574 52 PVLDYLQEESKAGPL-QSGQVDDWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQALALWQSSL 129 (822)
T ss_pred HHHHHHHHHHhhCcc-chhhHHHHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555565544443 22245566677777899999999998765 2222222233344678889999999999999999
Q ss_pred HhCCCCHHHHHHHHH
Q 002692 140 ELSPDDWECFLHYLG 154 (892)
Q Consensus 140 e~npDDW~~w~~yLd 154 (892)
+.+|+|=+.+..+..
T Consensus 130 ~~dP~n~~~l~gLa~ 144 (822)
T PRK14574 130 KKDPTNPDLISGMIM 144 (822)
T ss_pred hhCCCCHHHHHHHHH
Confidence 999999777765433
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.24 E-value=3.2 Score=52.12 Aligned_cols=83 Identities=7% Similarity=0.093 Sum_probs=61.0
Q ss_pred CchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002692 75 HEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLG 154 (892)
Q Consensus 75 et~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLd 154 (892)
.++..|-=|+.|..-+|++++|+++...... .-+....-+...+.++...|++++|.++++++|+.+|++-..+..+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4666888889999999999999888765322 011222234556778888999999999999999999998888876666
Q ss_pred hhhc
Q 002692 155 CLLE 158 (892)
Q Consensus 155 a~~e 158 (892)
+..+
T Consensus 92 ~l~~ 95 (765)
T PRK10049 92 TLAD 95 (765)
T ss_pred HHHH
Confidence 5543
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.17 E-value=1.4 Score=50.81 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHH-HHHHHcCChhHHHHHHhhhcccchhcH-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002692 59 LLAEGLLKKHVASHSLHEPEALIVYI-SILEQQSKYGDALEILSGTLGSLLVIE-VDKLRMQGRLLARQGDYTAAAQIYK 136 (892)
Q Consensus 59 ~LA~kmleK~i~~~~iet~EEl~LY~-~ILe~qgK~~EALelL~~~Lg~~l~~~-~e~L~Lka~lL~klg~weea~~~~k 136 (892)
..|+|++.+..... +++.-.++.. .+-..+|+++++.+.+..-.. .-+.. .....+.++++...|++++|.+.++
T Consensus 101 ~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~-~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~ 177 (398)
T PRK10747 101 QQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE-LADNDQLPVEITRVRIQLARNENHAARHGVD 177 (398)
T ss_pred HHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45667777654321 2232222222 333778999999999875321 11111 1122234688899999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHhhhc
Q 002692 137 KILELSPDDWECFLHYLGCLLE 158 (892)
Q Consensus 137 ~LLe~npDDW~~w~~yLda~~e 158 (892)
++++.+|++-.......++...
T Consensus 178 ~~~~~~P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 178 KLLEVAPRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999888877766543
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.13 E-value=0.031 Score=60.65 Aligned_cols=77 Identities=25% Similarity=0.280 Sum_probs=47.2
Q ss_pred HHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcCC
Q 002692 83 YISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDD 160 (892)
Q Consensus 83 Y~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el~ 160 (892)
++.+|...|+++++.++|..-... .+..+..+..-+..+..+|+.++|...+++++..+|+|+.....|-++....+
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAG 262 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---
T ss_pred HHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccc
Confidence 344555555555544444421111 01111122334667889999999999999999999999999999999886543
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.96 E-value=4.4 Score=46.77 Aligned_cols=123 Identities=12% Similarity=0.086 Sum_probs=72.6
Q ss_pred hhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCC
Q 002692 13 REYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSK 92 (892)
Q Consensus 13 R~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK 92 (892)
-+|||.++.+...+-.+..+. +..+........+.... ..-|...+.++.+..+-.......+-..+...+|+
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~------~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGD------EARANQHLERAAELADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCC------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCC
Confidence 368888777766654444322 33332222322222211 22344555555443321111122233688899999
Q ss_pred hhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002692 93 YGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSP 143 (892)
Q Consensus 93 ~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~np 143 (892)
+++|++.++.-.. .-+..+.-+++.+.++.+.|+|+++.+....+....+
T Consensus 169 ~~~Al~~l~~~~~-~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 169 NHAARHGVDKLLE-VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 9999999985322 2233455566777889999999999999998888643
No 27
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.79 E-value=7.5 Score=48.13 Aligned_cols=144 Identities=8% Similarity=-0.064 Sum_probs=88.1
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHhHhhhCC--CccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHH
Q 002692 5 MGLFNCYVREYSFVKQQQTAIKMYKHAGE--ERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIV 82 (892)
Q Consensus 5 ~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~--~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~L 82 (892)
......+++.+++..+-++.-.|.+..+- +.+.|=+++..+.... .+..|..+...+...+-..+....-.
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~-------~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALK-------SIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34567788999998888877777654332 2344444443333221 12334444444443333334434444
Q ss_pred HHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHhhhcC
Q 002692 83 YISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSP-DDWECFLHYLGCLLED 159 (892)
Q Consensus 83 Y~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~np-DDW~~w~~yLda~~el 159 (892)
.+..+-+.|+.++|.++++.-.... ..-+..-...+.+.|++++|.++++++++.++ .|..+|..++.+..+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~----~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERN----LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCC----eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 4577778899999999998521110 01122333667889999999999999998754 3667778888776543
No 28
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.60 E-value=0.13 Score=63.53 Aligned_cols=100 Identities=8% Similarity=0.086 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002692 59 LLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKI 138 (892)
Q Consensus 59 ~LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~L 138 (892)
.=|++.+++..+..| +..+....|..||.++++++||+...+.-+.. -+...+.+.+++.++.++|++++|.++|+++
T Consensus 103 ~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 103 DEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GSSSAREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred HHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 345566666665555 56778888999999999999999999875432 2334556778899999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHhhhcCC
Q 002692 139 LELSPDDWECFLHYLGCLLEDD 160 (892)
Q Consensus 139 Le~npDDW~~w~~yLda~~el~ 160 (892)
+..+||+=..|..|=.++.+.+
T Consensus 181 ~~~~p~~~~~~~~~a~~l~~~G 202 (694)
T PRK15179 181 SRQHPEFENGYVGWAQSLTRRG 202 (694)
T ss_pred HhcCCCcHHHHHHHHHHHHHcC
Confidence 9999999888888887776654
No 29
>PLN03077 Protein ECB2; Provisional
Probab=95.52 E-value=11 Score=47.99 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=47.7
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHhCCchhHHHH
Q 002692 355 NVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNILME 422 (892)
Q Consensus 355 ~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~LdIK~IQ~D 422 (892)
..|+..+...++.+. |-...+..+...|.|.....+|..+|...|-...|.++.+.|.-+.+.-+
T Consensus 661 ~aLl~ac~~~~~~e~---~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 661 GALLNACRIHRHVEL---GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred HHHHHHHHHcCChHH---HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 345554443343333 33345667778999999999999999999999999999988876666543
No 30
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.45 E-value=0.26 Score=48.36 Aligned_cols=128 Identities=21% Similarity=0.214 Sum_probs=84.4
Q ss_pred HHHHHHHh---hhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCc-hHHHH
Q 002692 6 GLFNCYVR---EYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHE-PEALI 81 (892)
Q Consensus 6 ~lF~ayvR---~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet-~EEl~ 81 (892)
..|...+. .+|+.+....+-.|.+.+|+.+|--++-+.+--......+ +.=|...+.+.+...+-.. .....
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~----~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD----YDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 34444444 6899888888899999999998876665532211111111 2235566666655442111 12334
Q ss_pred HH-HHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002692 82 VY-ISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKIL 139 (892)
Q Consensus 82 LY-~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LL 139 (892)
+. ..|+..+|+|++|++.|+......+ ......++|+++.+.|++++|...|++.|
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 43 4999999999999999976333222 23356789999999999999999998753
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.20 E-value=2.6 Score=42.25 Aligned_cols=146 Identities=18% Similarity=0.237 Sum_probs=94.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 002692 5 MGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYI 84 (892)
Q Consensus 5 ~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~ 84 (892)
..+=..|.+.++|..+.+...+..+..|+... .|..++.+..... + ..-|.+...+.+...+ .+......+.
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~~--~----~~~A~~~~~~al~~~~-~~~~~~~~~~ 106 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHDPDDYL-AYLALALYYQQLG--E----LEKAEDSFRRALTLNP-NNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHHcC--C----HHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 34446778889999988888877777776532 2333333332221 1 1234445555544333 3444556667
Q ss_pred HHHHHcCChhHHHHHHhhhcccc-hhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhc
Q 002692 85 SILEQQSKYGDALEILSGTLGSL-LVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLE 158 (892)
Q Consensus 85 ~ILe~qgK~~EALelL~~~Lg~~-l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~e 158 (892)
.++..+|++++|.+.+..-+... .+.....+...+..+.+.|++++|...+.+.+..+|++-..|..+......
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 88999999999999998654321 111223344456788899999999999999999999987777666555443
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.85 E-value=5.4 Score=44.89 Aligned_cols=147 Identities=18% Similarity=0.137 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCch-HHHHH
Q 002692 4 MMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEP-EALIV 82 (892)
Q Consensus 4 l~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~-EEl~L 82 (892)
...+=..|.+.|+|.++.+.--++.+..|.....+-....++.+.. .-..-..+..+++.. .+.... +....
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~----~~~~~~~~~~~~ 182 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEK---DWQKAIDVAERLEKL----GGDSLRVEIAHF 182 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHh----cCCcchHHHHHH
Confidence 3455667889999999988877777665554333333333443321 112233444444433 332221 11222
Q ss_pred ---HHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHhhhc
Q 002692 83 ---YISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDD-WECFLHYLGCLLE 158 (892)
Q Consensus 83 ---Y~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDD-W~~w~~yLda~~e 158 (892)
...++..+|++++|++.++.-+.. .+.........+..+.+.|++++|.+.++++++.+|++ ...|..+..+..+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAA-DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhH-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 235667899999999998864321 12223344556788899999999999999999988876 3445555554443
No 33
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.77 E-value=0.15 Score=42.62 Aligned_cols=61 Identities=31% Similarity=0.483 Sum_probs=49.9
Q ss_pred HHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002692 84 ISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDD 145 (892)
Q Consensus 84 ~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDD 145 (892)
...+..+|++++|++.++.-+.. .+...+-+...+.++...|++++|...++.+++.+|+|
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ-DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 46778899999999999875442 35566678888999999999999999999999999986
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.59 E-value=18 Score=45.80 Aligned_cols=112 Identities=12% Similarity=0.064 Sum_probs=81.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHhCCchhHHHHhh---------hhhhhhhhhccc
Q 002692 366 NYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNILMETV---------SHHILPQMLVSS 436 (892)
Q Consensus 366 ~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~LdIK~IQ~DTL---------ghlil~rlst~p 436 (892)
...+..+|+.+--.+|+.+|.|-..---+.-+...=|.++.|..+| ++|+-++- +|..+- .+
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIF-----sqVrEa~~~~~dv~lNlah~~~e----~~ 694 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIF-----SQVREATSDFEDVWLNLAHCYVE----QG 694 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHH-----HHHHHHHhhCCceeeeHHHHHHH----HH
Confidence 3467899999999999999999998888888999999999999999 67776665 232211 12
Q ss_pred chhhhHHHHHHHHH-HHHHhhhhHHHHHHHH-HhcCChhhHHHHHHHHHHHh
Q 002692 437 LWVESNNLLRDYLR-FMDDHLRESADLTFLA-YRHRNYSKVIEFVQFKERLQ 486 (892)
Q Consensus 437 ~~~~~~~ll~~~lr-fy~~s~ke~~d~I~~A-fe~GsYSKI~EfieF~eRL~ 486 (892)
.|..+.+.++.+++ ||..+..++-.++.+| |+.|-|.+-.+-..--.++.
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 24456677777765 7766667888888777 57777766666555544443
No 35
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.58 E-value=2.7 Score=45.15 Aligned_cols=142 Identities=19% Similarity=0.207 Sum_probs=102.8
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhHhhhCCC--ccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHH
Q 002692 4 MMGLFNCYVREYSFVKQQQTAIKMYKHAGEE--RFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALI 81 (892)
Q Consensus 4 l~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~--rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~ 81 (892)
..+|=+.|++.||+..+-+ .|.|.-... -|.-|.++..+-|..-. ..+|..+-.|++...+ .+..-+-
T Consensus 38 rlqLal~YL~~gd~~~A~~---nlekAL~~DPs~~~a~~~~A~~Yq~~Ge------~~~A~e~YrkAlsl~p-~~GdVLN 107 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKK---NLEKALEHDPSYYLAHLVRAHYYQKLGE------NDLADESYRKALSLAP-NNGDVLN 107 (250)
T ss_pred HHHHHHHHHHCCCHHHHHH---HHHHHHHhCcccHHHHHHHHHHHHHcCC------hhhHHHHHHHHHhcCC-Cccchhh
Confidence 4567788999999865444 455555433 38899999999988632 3478888888887665 4555666
Q ss_pred HHHHHHHHcCChhHHHHHHhhhcccc-hhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 002692 82 VYISILEQQSKYGDALEILSGTLGSL-LVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGC 155 (892)
Q Consensus 82 LY~~ILe~qgK~~EALelL~~~Lg~~-l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda 155 (892)
=|--.|-.||+|+||...++..+... +....+-+.-.+-+-.+.|+...+.+.++.-|+.+|+.=.......+.
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 78899999999999999888654443 222223333345577889999999999999999988876665555444
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=94.28 E-value=7.4 Score=46.96 Aligned_cols=90 Identities=21% Similarity=0.111 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002692 58 LLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKK 137 (892)
Q Consensus 58 L~LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~ 137 (892)
..-|...+.++++..| .+++-...+..++..+|++++|++.++.-+. .-+.....+...+.++...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANL-LSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4566677777776555 4555666677899999999999999986432 1223334456668889999999999999999
Q ss_pred HHHhCCCCHHHH
Q 002692 138 ILELSPDDWECF 149 (892)
Q Consensus 138 LLe~npDDW~~w 149 (892)
.++.+|++...+
T Consensus 398 Al~l~P~~~~~~ 409 (553)
T PRK12370 398 CLKLDPTRAAAG 409 (553)
T ss_pred HHhcCCCChhhH
Confidence 999999975543
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=94.20 E-value=4.7 Score=40.41 Aligned_cols=142 Identities=11% Similarity=-0.017 Sum_probs=89.4
Q ss_pred HHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCC-chHHHHHHHH
Q 002692 7 LFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLH-EPEALIVYIS 85 (892)
Q Consensus 7 lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~ie-t~EEl~LY~~ 85 (892)
+=..|.+.+++..+.+..-+..+..|+....+++...++++.. -..-|.+...+.+...... ...-...+..
T Consensus 71 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG-------KYEQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-------cHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 3456777889988888777777777776544444444443321 1233445555554322222 2233444568
Q ss_pred HHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 002692 86 ILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCL 156 (892)
Q Consensus 86 ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~ 156 (892)
++..+|++++|.+.+..-+.. .+.....+...+.++.+.|++++|...+++.+...|++-..+.......
T Consensus 144 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 144 CALKAGDFDKAEKYLTRALQI-DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA 213 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 889999999999999864321 1222334455678889999999999999999998777655555444433
No 38
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=93.87 E-value=0.5 Score=46.68 Aligned_cols=90 Identities=16% Similarity=0.051 Sum_probs=66.4
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002692 61 AEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILE 140 (892)
Q Consensus 61 A~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe 140 (892)
|.....+++...+ ...+-......++..+|++++|++....-+. .-+...+.+.-.+.++.+.|++++|.+.++..|.
T Consensus 43 A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 43 AVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALM-LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555554444 3555667777999999999999999986443 1233344555667889999999999999999999
Q ss_pred hCCCCHHHHHHH
Q 002692 141 LSPDDWECFLHY 152 (892)
Q Consensus 141 ~npDDW~~w~~y 152 (892)
.+|+|-.+|...
T Consensus 121 ~~p~~~~~~~~~ 132 (144)
T PRK15359 121 MSYADASWSEIR 132 (144)
T ss_pred hCCCChHHHHHH
Confidence 999998888543
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=93.83 E-value=26 Score=44.65 Aligned_cols=45 Identities=16% Similarity=-0.028 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 002692 368 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYK 412 (892)
Q Consensus 368 ~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~ 412 (892)
+.+-+|..+||..+...|.|..+++.++.+|+--|-+..|...++
T Consensus 430 gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 468899999999999999999999999999999999999999984
No 40
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.72 E-value=0.18 Score=42.44 Aligned_cols=48 Identities=29% Similarity=0.277 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHhCC
Q 002692 368 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALD 415 (892)
Q Consensus 368 ~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~Ld 415 (892)
+..-+|+.+++.++..+|.|.++++.++++|...|-...|.+.+..+-
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999987653
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=4.1 Score=47.95 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=51.1
Q ss_pred chHHHHHHHHHHH-------HcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002692 76 EPEALIVYISILE-------QQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWEC 148 (892)
Q Consensus 76 t~EEl~LY~~ILe-------~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~ 148 (892)
+.++..=|..-|. .+|||+||+++-...+. +.+.++-.-.-++.++..+|+|+++.+-|.+.|+.||| +
T Consensus 107 ~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~-l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~---Y 182 (606)
T KOG0547|consen 107 LKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE-LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD---Y 182 (606)
T ss_pred ChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh-cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH---H
Confidence 4455555555554 35899999998875322 22333323334668899999999999999999999997 3
Q ss_pred HHHHHH
Q 002692 149 FLHYLG 154 (892)
Q Consensus 149 w~~yLd 154 (892)
-+.|++
T Consensus 183 ~KAl~R 188 (606)
T KOG0547|consen 183 VKALLR 188 (606)
T ss_pred HHHHHH
Confidence 344444
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=93.65 E-value=7.2 Score=47.11 Aligned_cols=127 Identities=10% Similarity=0.011 Sum_probs=75.6
Q ss_pred hcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChh
Q 002692 15 YSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYG 94 (892)
Q Consensus 15 ~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~ 94 (892)
+++..+...+-+.-+..|++... |..+..++.... . ..-|...+++++...| .+++-...+..++..+|+++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a-~~~lg~~~~~~g-~-----~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~ 389 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQA-LGLLGLINTIHS-E-----YIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLE 389 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHcc-C-----HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHH
Confidence 34555555555555666766533 333333332221 1 2336667777766554 34445555669999999999
Q ss_pred HHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Q 002692 95 DALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELS-PDDWECFL 150 (892)
Q Consensus 95 EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~n-pDDW~~w~ 150 (892)
||++.++.-+.- -+.........+..+...|++++|.+.+++++..+ |++...+.
T Consensus 390 eAi~~~~~Al~l-~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~ 445 (553)
T PRK12370 390 EALQTINECLKL-DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLS 445 (553)
T ss_pred HHHHHHHHHHhc-CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHH
Confidence 999999864321 11111111223344556899999999999999886 55555443
No 43
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.64 E-value=0.25 Score=42.14 Aligned_cols=65 Identities=34% Similarity=0.396 Sum_probs=52.4
Q ss_pred HHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002692 85 SILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFL 150 (892)
Q Consensus 85 ~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~ 150 (892)
.|+..+++|++|++.++.-+. .-+.....+..+|.++.+.|+|++|.+.+...|+.+|++-..-.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE-LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 467789999999999986432 12334455677889999999999999999999999999887643
No 44
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.55 E-value=2.7 Score=45.80 Aligned_cols=146 Identities=13% Similarity=0.086 Sum_probs=107.6
Q ss_pred hHHHHHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHH
Q 002692 3 HMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIV 82 (892)
Q Consensus 3 Ll~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~L 82 (892)
++.++|.+.+..+...-+|..--+|...||+.+- .=-.-.+++++...-+ =|....+..++++|..+. ++.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R-V~~lkam~lEa~~~~~------~A~e~y~~lL~ddpt~~v--~~K 124 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR-VGKLKAMLLEATGNYK------EAIEYYESLLEDDPTDTV--IRK 124 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHhhchh------hHHHHHHHHhccCcchhH--HHH
Confidence 6788999999999999999999999999986521 1122245677664322 133444454444543322 222
Q ss_pred -HHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhc
Q 002692 83 -YISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLE 158 (892)
Q Consensus 83 -Y~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~e 158 (892)
-+-|+..|||--||++.|...+. .+..+.+-|.--++++...|+++.|.-++++++-.+|-+..++..|-+-..-
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 23688899999999999987665 4556677777778999999999999999999999999999999988776553
No 45
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=93.38 E-value=1.1 Score=42.61 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=60.9
Q ss_pred chHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 002692 76 EPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGC 155 (892)
Q Consensus 76 t~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda 155 (892)
+.+....+...+..+|++++|.+.+..-+. .-+.....+...+.++.+.|++.+|...++.++..+|+++..|..+-.+
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA-YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 345666777888889999999998875321 1223344556667888899999999999999999999999998665554
Q ss_pred hh
Q 002692 156 LL 157 (892)
Q Consensus 156 ~~ 157 (892)
..
T Consensus 95 ~~ 96 (135)
T TIGR02552 95 LL 96 (135)
T ss_pred HH
Confidence 43
No 46
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.35 E-value=0.14 Score=43.08 Aligned_cols=64 Identities=22% Similarity=0.397 Sum_probs=46.9
Q ss_pred HHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002692 87 LEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHY 152 (892)
Q Consensus 87 Le~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~y 152 (892)
|-.+|+|++|++++..-+. ..+...+.....+.++.+.|++++|.+.++.++..+||| ..|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQ-RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHH-HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHHH
T ss_pred ChhccCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHHH
Confidence 3468999999999986433 223334444456789999999999999999999999997 444433
No 47
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.32 E-value=0.42 Score=42.33 Aligned_cols=74 Identities=26% Similarity=0.299 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCCCCchHHHHHH--HHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002692 61 AEGLLKKHVASHSLHEPEALIVY--ISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKK 137 (892)
Q Consensus 61 A~kmleK~i~~~~iet~EEl~LY--~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~ 137 (892)
|..+.+|.++..+..+ +...+| ..++-.+|+|++|+++++. .. .-+...+...+.|+++.++|+|++|.+++++
T Consensus 8 Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 8 AIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3444445444444322 333344 6999999999999999986 21 1122234455679999999999999998875
No 48
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=93.32 E-value=1.9 Score=50.46 Aligned_cols=145 Identities=15% Similarity=0.026 Sum_probs=106.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 002692 4 MMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVY 83 (892)
Q Consensus 4 l~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY 83 (892)
.+.+=.++.+.+.+..+=+.-..|.|.+|++.||.=+..-+++=+... +=|..+..|++...|-. +-=-+.|
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~-------~~A~e~~~kal~l~P~~-~~l~~~~ 380 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKA-------KEAIERLKKALALDPNS-PLLQLNL 380 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHhcCCCc-cHHHHHH
Confidence 456667788899998888888889999999988744444444433221 12344555555445544 4356677
Q ss_pred HHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhc
Q 002692 84 ISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLE 158 (892)
Q Consensus 84 ~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~e 158 (892)
...|-+.|+++||+..|+..+.. .+..++-|.+-++.+.++|+-.++...+.+.+.. .-+|.-|..++..+.+
T Consensus 381 a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~-~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL-AGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 79999999999999999975542 3445667888889999999999999999888887 6678888888777655
No 49
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.29 E-value=1.3 Score=51.49 Aligned_cols=113 Identities=21% Similarity=0.289 Sum_probs=87.2
Q ss_pred ccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHH
Q 002692 35 RFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDK 114 (892)
Q Consensus 35 rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~ 114 (892)
.|+.+..+..+-.. ..+.-|..+++++.+.. ++-..+.++++-..++-.+|+++++..+- ..+...+.
T Consensus 169 NyLv~~Ll~~l~~t-------~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~-~~p~d~~L 236 (395)
T PF09295_consen 169 NYLVDTLLKYLSLT-------QRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALK-ENPQDSEL 236 (395)
T ss_pred hHHHHHHHHHHhhc-------ccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCCCHHH
Confidence 57777776655322 11345667777765433 55667777999889999999999997663 23444677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 002692 115 LRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 159 (892)
Q Consensus 115 L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el 159 (892)
|.++++.+.+.++++.|..++++.....|+++..|..+-.+-..+
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 889999999999999999999999999999999999988886654
No 50
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.96 E-value=0.48 Score=39.95 Aligned_cols=67 Identities=27% Similarity=0.342 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 002692 76 EPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQG-DYTAAAQIYKKILELSP 143 (892)
Q Consensus 76 t~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg-~weea~~~~k~LLe~np 143 (892)
+++.......++..+|+|++|++.++.-+. .-+....-+..++.++.+.| ++++|.+.+++.|+.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~-~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE-LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH-HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456677777999999999999999986432 12334455677788899999 79999999999999877
No 51
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=92.72 E-value=6.4 Score=50.93 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=38.0
Q ss_pred CChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 002692 91 SKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLL 157 (892)
Q Consensus 91 gK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~ 157 (892)
|++++|+..+..-+.. -+. .+.+...+.++.+.|++++|...+++.++.+||+-..+..+-.+..
T Consensus 590 Gr~~eAl~~~~~AL~l-~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 590 GQPELALNDLTRSLNI-APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred CCHHHHHHHHHHHHHh-CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7777777766643321 111 2233344566667777777777777777777777766655544443
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=1.4 Score=50.58 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=104.9
Q ss_pred CchHHHHHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHH
Q 002692 1 MDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEAL 80 (892)
Q Consensus 1 ~ELl~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl 80 (892)
||...+||.+|+--+.+|.+--+|---+|.+|++.-..=-+-..+ .+.++.+.+| |.|..+|.....|.-.+ .|
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V-~~~dp~~rEK----AKkf~ek~L~~~P~Y~~-AV 441 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLV-LFPDPRMREK----AKKFAEKSLKINPIYTP-AV 441 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhccee-eccCchhHHH----HHHHHHhhhccCCccHH-HH
Confidence 467889999999999999999999999999998621111110000 1112222233 56677776666676555 77
Q ss_pred HHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002692 81 IVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLG 154 (892)
Q Consensus 81 ~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLd 154 (892)
.....++...|++++++.+|+..|..--+.... +..++.+...+.++++.+.|...|..+|.|=...+++=.
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH--~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLH--NHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhccccHHH--HHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 788899999999999999999876542222221 234678888899999999999999999999988776543
No 53
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.36 E-value=0.38 Score=37.65 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002692 115 LRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYL 153 (892)
Q Consensus 115 L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yL 153 (892)
+...++.+...|++++|.+.++++|+.+|||-..|..+-
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 445678999999999999999999999999999998764
No 54
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.34 E-value=16 Score=46.74 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=81.2
Q ss_pred chHHHHHHHHHhhhcHHHHHHHHHHhHhhhCCC-ccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHH
Q 002692 2 DHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEE-RFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEAL 80 (892)
Q Consensus 2 ELl~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~-rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl 80 (892)
+...+|-..|.+.+++.++.++.....+.+|+. .+|+-..+ ++.|....++ ..+. +++...-..+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~-l~~q~~~~~~-~~lv----~~l~~~~~~~-------- 97 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI-LSLSRRPLND-SNLL----NLIDSFSQNL-------- 97 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH-HHHhhcchhh-hhhh----hhhhhccccc--------
Confidence 345677788999999999999999888888887 44444444 5555443211 1111 4444332211
Q ss_pred HHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 002692 81 IVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCL 156 (892)
Q Consensus 81 ~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~ 156 (892)
++ ++++.+...++. ......-++-.|.+|.++|+++++++.|+++|+.+|+|-.+...|-...
T Consensus 98 -----------~~-~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 98 -----------KW-AIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred -----------ch-hHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 22 223333222221 1111113455689999999999999999999999999999888776554
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=92.32 E-value=0.8 Score=49.72 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=56.3
Q ss_pred CchHHHHHHHHHHHHcCChhHHHHHHhhhcc-cchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002692 75 HEPEALIVYISILEQQSKYGDALEILSGTLG-SLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYL 153 (892)
Q Consensus 75 et~EEl~LY~~ILe~qgK~~EALelL~~~Lg-~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yL 153 (892)
.++.-+..++.++...++++++.++++.-.. .........+...+.++.+.|++++|.+.+++.|+.+|||=..+..++
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3455666777888999999999999986221 112334556778889999999999999999999999999999999888
Q ss_pred HhhhcC
Q 002692 154 GCLLED 159 (892)
Q Consensus 154 da~~el 159 (892)
....+.
T Consensus 188 ~~li~~ 193 (280)
T PF13429_consen 188 WLLIDM 193 (280)
T ss_dssp HHHCTT
T ss_pred HHHHHC
Confidence 876543
No 56
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=91.91 E-value=5.4 Score=41.69 Aligned_cols=120 Identities=12% Similarity=0.115 Sum_probs=82.4
Q ss_pred CchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHHhCCCCHHHHHH
Q 002692 75 HEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRL-LARQGD--YTAAAQIYKKILELSPDDWECFLH 151 (892)
Q Consensus 75 et~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~l-L~klg~--weea~~~~k~LLe~npDDW~~w~~ 151 (892)
.+.+-......++...|++++|++.+..-+. .-+...+.+...+.. +...|+ .+++.+.+++.|+.+|+|...+..
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~-l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQ-LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 4555666666899999999999999985322 122333444444554 467777 499999999999999999999877
Q ss_pred HHHhhhcCCCccccCCCCCCCCCCCcccccccCcchhhhhhcHHHHHHHHHHHhhccCCCCCchhHhHhchHHHHH
Q 002692 152 YLGCLLEDDSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERRK 227 (892)
Q Consensus 152 yLda~~el~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~i~ea~~fi~~l~a~~~~~~~Rgp~LA~LEL~~Rl 227 (892)
+-.+.++.+ ..+++....+++++...+...|-..+..++..+.+
T Consensus 150 LA~~~~~~g--------------------------------~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~~a~~~ 193 (198)
T PRK10370 150 LASDAFMQA--------------------------------DYAQAIELWQKVLDLNSPRVNRTQLVESINMAKLL 193 (198)
T ss_pred HHHHHHHcC--------------------------------CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Confidence 766666543 25667777777765455566776666555555443
No 57
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=91.82 E-value=1.9 Score=42.53 Aligned_cols=80 Identities=16% Similarity=0.001 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhc
Q 002692 79 ALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLE 158 (892)
Q Consensus 79 El~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~e 158 (892)
.+.-...++...|++++|++.+..-+.. -+...+-+..++.++.+.|++++|.+.|+..++.+|+|-..|..+-.+...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3444568899999999999998863321 122344566778899999999999999999999999999988877777665
Q ss_pred C
Q 002692 159 D 159 (892)
Q Consensus 159 l 159 (892)
+
T Consensus 105 ~ 105 (144)
T PRK15359 105 M 105 (144)
T ss_pred c
Confidence 4
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=91.76 E-value=45 Score=42.10 Aligned_cols=131 Identities=15% Similarity=0.102 Sum_probs=86.6
Q ss_pred chHHHHHHHHHhhhcHHHHHHHHHHhHhhhCCC-ccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHH
Q 002692 2 DHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEE-RFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEAL 80 (892)
Q Consensus 2 ELl~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~-rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl 80 (892)
||++.+=.++.+.+.|+.+=.--..+-+..+.+ -++||-...++++-.. ...|.--.+|.+...|...- .-
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e-------~e~A~e~y~kvl~~~p~~~D-~R 486 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE-------YEEAIEFYEKVLILAPDNLD-AR 486 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh-------HHHHHHHHHHHHhcCCCchh-hh
Confidence 678888899999999998877777777777755 5899999988886643 22344455555555554333 22
Q ss_pred HHHHHHHHHcCChhHHHHHHhh---hcccc-----hhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002692 81 IVYISILEQQSKYGDALEILSG---TLGSL-----LVIEVDKLRMQGRLLARQGDYTAAAQIYKKILE 140 (892)
Q Consensus 81 ~LY~~ILe~qgK~~EALelL~~---~Lg~~-----l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe 140 (892)
+=...|++++|++++|++.|.. +=+.. +..+...+..+...+.+.|+.++=.+....++.
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334888999999999999987 21111 111111122233667788888887777777666
No 59
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.27 E-value=23 Score=43.04 Aligned_cols=349 Identities=19% Similarity=0.138 Sum_probs=176.8
Q ss_pred chHHHHHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHH
Q 002692 2 DHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALI 81 (892)
Q Consensus 2 ELl~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~ 81 (892)
||.-++| ..|||+.+-+-++.++...|.++=-.--+-+++.|...-......-.+|-|..- +-.|..-
T Consensus 53 ~lah~~y----q~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~--------q~ae~ys 120 (966)
T KOG4626|consen 53 ELAHRLY----QGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP--------QGAEAYS 120 (966)
T ss_pred HHHHHHH----hccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccc--------hHHHHHH
Confidence 4444444 469999999999999998886643333344455555432111111122222111 2334455
Q ss_pred HHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcCCC
Q 002692 82 VYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDDS 161 (892)
Q Consensus 82 LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el~~ 161 (892)
=|.-|+.+.|+.++|+.+-...+.. -+.-.+-+--++..|...|+.+.|.+.|...|..|||.+..-..+=.-..+
T Consensus 121 n~aN~~kerg~~~~al~~y~~aiel-~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka--- 196 (966)
T KOG4626|consen 121 NLANILKERGQLQDALALYRAAIEL-KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKA--- 196 (966)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhc-CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHh---
Confidence 5889999999999999887643211 011123333356788889999999999999999999988764322111111
Q ss_pred ccccCCCCCCCCCCCcccccccCcchhhhhhcHHHHHHHHHHHhhccCCCCCchhHhHhchHHHHHhhhCCCCchHHHHH
Q 002692 162 SWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERRKLLYGKNNNDELMEA 241 (892)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~i~ea~~fi~~l~a~~~~~~~Rgp~LA~LEL~~Rl~~~G~~~~~~l~~~ 241 (892)
+.++.++.+...+-++ ..+ +..+|.=.|.--+... +++-..
T Consensus 197 -----------------------------~Grl~ea~~cYlkAi~-~qp----~fAiawsnLg~~f~~~-----Gei~~a 237 (966)
T KOG4626|consen 197 -----------------------------EGRLEEAKACYLKAIE-TQP----CFAIAWSNLGCVFNAQ-----GEIWLA 237 (966)
T ss_pred -----------------------------hcccchhHHHHHHHHh-hCC----ceeeeehhcchHHhhc-----chHHHH
Confidence 1234444444333331 111 1111111111111111 244455
Q ss_pred HHHHHHHcCCCcccHHhHHHHHhh---c-----CHHHHHHHHHHHHhccCCCCch----------hhhHHHHHHHHHHHH
Q 002692 242 VLEYFLSFGHLACFTSDVEDFLLV---L-----SLDKKTELLERLKSSSTSHSTE----------SIKELGWFITLKKIQ 303 (892)
Q Consensus 242 l~~Yf~kFg~KpcCF~DLk~Yl~~---L-----~~ee~~~fl~~l~~~~~~~s~~----------~~k~L~~~In~~Kl~ 303 (892)
|..|.+---=+|-. .|- |+.+ + -+....-....+..+ .+.+. ..-.+.-.|..+|
T Consensus 238 iq~y~eAvkldP~f-~dA--YiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Yk-- 310 (966)
T KOG4626|consen 238 IQHYEEAVKLDPNF-LDA--YINLGNVYKEARIFDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYK-- 310 (966)
T ss_pred HHHHHHhhcCCCcc-hHH--HhhHHHHHHHHhcchHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHH--
Confidence 55544443333322 221 2210 0 000001111111100 00000 0001111122221
Q ss_pred HHhcCccCCChH--------HHHHHHHHHHHHHHhhCCCCCCCCCCcccccchHHHHHHHHHHHHhhhcCChHHHHHHHH
Q 002692 304 ELIGNTYKLLVD--------ELERSAVQMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIM 375 (892)
Q Consensus 304 rllg~~~~ls~~--------~~~~~v~~lv~~Y~~~l~l~~~l~~tE~qp~Del~LLAa~~Ll~l~~~~~~~~~Ll~Ai~ 375 (892)
|.+...+..+.. .-...|.+.+..|.+.+.+.. .++|-. +-|-..|. .-+.+-.|+.
T Consensus 311 ral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-------~hadam-----~NLgni~~---E~~~~e~A~~ 375 (966)
T KOG4626|consen 311 RALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-------NHADAM-----NNLGNIYR---EQGKIEEATR 375 (966)
T ss_pred HHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-------ccHHHH-----HHHHHHHH---HhccchHHHH
Confidence 222222222100 011345666777777764321 122222 22222232 2346677888
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHH-hCCchhHHHHhhhhh
Q 002692 376 VLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYK-ALDVKNILMETVSHH 427 (892)
Q Consensus 376 LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~-~LdIK~IQ~DTLghl 427 (892)
+-+.+|...|+-....-=|+.||..-|..+.|..+|. .|.||-.--|+++-.
T Consensus 376 ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~Nm 428 (966)
T KOG4626|consen 376 LYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNM 428 (966)
T ss_pred HHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhc
Confidence 8888999999988888889999999999999999997 678887777777654
No 60
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=90.92 E-value=2.2 Score=40.52 Aligned_cols=91 Identities=11% Similarity=0.001 Sum_probs=65.2
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002692 61 AEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILE 140 (892)
Q Consensus 61 A~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe 140 (892)
|..++++.+...+ .+++-......++..+|++++|++.+..-+.. -+...+.....+.++...|++++|...++..++
T Consensus 36 A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 36 ALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-DPDDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455666555443 34545555568888999999999998864321 223344556678889999999999999999999
Q ss_pred hCCCCHHHHHHHH
Q 002692 141 LSPDDWECFLHYL 153 (892)
Q Consensus 141 ~npDDW~~w~~yL 153 (892)
.+|++-.++...-
T Consensus 114 ~~p~~~~~~~~~~ 126 (135)
T TIGR02552 114 ICGENPEYSELKE 126 (135)
T ss_pred hccccchHHHHHH
Confidence 9999877654433
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=12 Score=43.30 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=101.6
Q ss_pred CchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002692 75 HEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLG 154 (892)
Q Consensus 75 et~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLd 154 (892)
++.++++|-..+|-...+|+-|+.+.+..+... .....-+-||+.+|..+|++++|.=+++......|-+-++|++++.
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h 376 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFH 376 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 688899999999999999999999988643211 1123456789999999999999999999999999999999999998
Q ss_pred hhhcCCC--------ccccC--CCCCCCCCCCcccccccCcch-hh---hhhcHHHHHHHHHHHhhccCCCCCchhHhHh
Q 002692 155 CLLEDDS--------SWCNA--ASSDPIHPQKSVDCKFSHLTD-EV---FNSRISEASTSVKKLHADTSVNLIRCPYLAN 220 (892)
Q Consensus 155 a~~el~~--------~~~~~--~~~~~~~p~~~~~~~~~~l~~-~~---~~~~i~ea~~fi~~l~a~~~~~~~Rgp~LA~ 220 (892)
|-+.-+. .|.-+ +.+. +.-.|.. ++ -...-+++..|.++-. ...+.-=+.-++.
T Consensus 377 sYLA~~~~kEA~~~An~~~~~~~~sA----------~~LtL~g~~V~~~dp~~rEKAKkf~ek~L--~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 377 SYLAQKRFKEANALANWTIRLFQNSA----------RSLTLFGTLVLFPDPRMREKAKKFAEKSL--KINPIYTPAVNLI 444 (564)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhcch----------hhhhhhcceeeccCchhHHHHHHHHHhhh--ccCCccHHHHHHH
Confidence 8442111 01100 0000 0000100 00 0123456777877644 1222222333444
Q ss_pred chHHHHHhhhCCCCchHHHHHHHHHHHHcCC
Q 002692 221 LEIERRKLLYGKNNNDELMEAVLEYFLSFGH 251 (892)
Q Consensus 221 LEL~~Rl~~~G~~~~~~l~~~l~~Yf~kFg~ 251 (892)
-||..+ -| ...+.+.++..|+..|.+
T Consensus 445 AEL~~~---Eg--~~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 445 AELCQV---EG--PTKDIIKLLEKHLIIFPD 470 (564)
T ss_pred HHHHHh---hC--ccchHHHHHHHHHhhccc
Confidence 455543 12 346788999999988865
No 62
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=90.83 E-value=4.7 Score=50.20 Aligned_cols=137 Identities=11% Similarity=0.013 Sum_probs=94.1
Q ss_pred CchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002692 75 HEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLG 154 (892)
Q Consensus 75 et~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLd 154 (892)
++++..++...|++.+|.++||+.+++.-+. ..+....-....+..|.+.++.++|...++.+|..+||+-.....+=.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~-~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ-RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 4577788888999999999999999987432 223323333345688999999999999999999999999999877776
Q ss_pred hhhcCCCccccCCCCCCCCCCCcccccccCcchhhhhhcHHHHHHHHHHHhhccCCCCCchhHhHhchHHHHHhhhCCCC
Q 002692 155 CLLEDDSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERRKLLYGKNN 234 (892)
Q Consensus 155 a~~el~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~i~ea~~fi~~l~a~~~~~~~Rgp~LA~LEL~~Rl~~~G~~~ 234 (892)
++.+++ ..++|.+.++++++ .++... =|.+.+...+...|..
T Consensus 163 ~l~~~g--------------------------------~~~~A~~~y~~~~~--~~p~~~---~~~~~~a~~l~~~G~~- 204 (694)
T PRK15179 163 SWDEIG--------------------------------QSEQADACFERLSR--QHPEFE---NGYVGWAQSLTRRGAL- 204 (694)
T ss_pred HHHHhc--------------------------------chHHHHHHHHHHHh--cCCCcH---HHHHHHHHHHHHcCCH-
Confidence 666554 24567778888774 222222 2445555555555632
Q ss_pred chHHHHHHHHHHHHcCC
Q 002692 235 NDELMEAVLEYFLSFGH 251 (892)
Q Consensus 235 ~~~l~~~l~~Yf~kFg~ 251 (892)
++-......=++.+++
T Consensus 205 -~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 205 -WRARDVLQAGLDAIGD 220 (694)
T ss_pred -HHHHHHHHHHHHhhCc
Confidence 3444555555556664
No 63
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=90.06 E-value=0.88 Score=37.98 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHh
Q 002692 367 YGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 413 (892)
Q Consensus 367 ~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~ 413 (892)
.+..-+|+.+++.++...|.|.+..+++.++|...|....|...|+.
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999999874
No 64
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=88.92 E-value=5 Score=51.89 Aligned_cols=138 Identities=12% Similarity=-0.004 Sum_probs=79.9
Q ss_pred chHHHHHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHH
Q 002692 2 DHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALI 81 (892)
Q Consensus 2 ELl~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~ 81 (892)
++...+...|++.|++.++...+-+--+..|++++|.=.. ..+ ... .+-....++++.. . ++.+++.
T Consensus 79 ~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i-----~~~-~kA~~~ye~l~~~----~--P~n~~~~ 145 (987)
T PRK09782 79 PLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI-----PVE-VKSVTTVEELLAQ----Q--KACDAVP 145 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh-----ccC-hhHHHHHHHHHHh----C--CCChhHH
Confidence 4567888899999999999998888888888775443222 111 111 1222344444433 2 3444555
Q ss_pred HHHHHH------HHcCChhHHHHHHhhhcccchhc-HHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002692 82 VYISIL------EQQSKYGDALEILSGTLGSLLVI-EVDKLRMQ-GRLLARQGDYTAAAQIYKKILELSPDDWECFLHYL 153 (892)
Q Consensus 82 LY~~IL------e~qgK~~EALelL~~~Lg~~l~~-~~e~L~Lk-a~lL~klg~weea~~~~k~LLe~npDDW~~w~~yL 153 (892)
+++-.+ -...++++|++.|+ . -..-+. ....+++. .+++.++|+|+++.+.++++++.+|.+=..+..+-
T Consensus 146 ~~la~~~~~~~~l~y~q~eqAl~AL~-l-r~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~ 223 (987)
T PRK09782 146 TLRCRSEVGQNALRLAQLPVARAQLN-D-ATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWF 223 (987)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHH-H-hhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 555443 22444556666655 1 111111 22234443 57788888888888888888888777766555444
Q ss_pred H
Q 002692 154 G 154 (892)
Q Consensus 154 d 154 (892)
+
T Consensus 224 ~ 224 (987)
T PRK09782 224 D 224 (987)
T ss_pred H
Confidence 3
No 65
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=87.99 E-value=5.8 Score=36.14 Aligned_cols=73 Identities=21% Similarity=0.168 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHhhhccc--chhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002692 77 PEALIVYISILEQQSKYGDALEILSGTLGS--LLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECF 149 (892)
Q Consensus 77 ~EEl~LY~~ILe~qgK~~EALelL~~~Lg~--~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w 149 (892)
++..+.+..++...|++++|++.++.-+.. .-......+...+.++.+.|+++++...+..++...|++-...
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 445566779999999999999999853321 1111123355567888999999999999999999999886654
No 66
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=87.99 E-value=19 Score=37.63 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=32.7
Q ss_pred HHHHHcCChhHHHHHHhhhcccc--hhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002692 85 SILEQQSKYGDALEILSGTLGSL--LVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSP 143 (892)
Q Consensus 85 ~ILe~qgK~~EALelL~~~Lg~~--l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~np 143 (892)
.+...+|++++|++.+..-+... -+...+-+...+..+.++|+++++.++++.+....|
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 44455677777777666432110 111233445556677777777777776666554433
No 67
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=87.91 E-value=4.5 Score=46.17 Aligned_cols=95 Identities=15% Similarity=0.116 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002692 59 LLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKI 138 (892)
Q Consensus 59 ~LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~L 138 (892)
.-|.....+++...+ .+.+-...+..++..+|++++|+..++.-+. .-+....-...++.++..+|++++|...+++.
T Consensus 19 ~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~-l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~a 96 (356)
T PLN03088 19 ALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE-LDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96 (356)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345555666665444 3455555666899999999999999886432 11222334455678889999999999999999
Q ss_pred HHhCCCCHHHHHHHHHh
Q 002692 139 LELSPDDWECFLHYLGC 155 (892)
Q Consensus 139 Le~npDDW~~w~~yLda 155 (892)
+..+|+|-.....+-.+
T Consensus 97 l~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 97 ASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHhCCCCHHHHHHHHHH
Confidence 99999977665544444
No 68
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.47 E-value=73 Score=39.08 Aligned_cols=133 Identities=14% Similarity=0.211 Sum_probs=83.5
Q ss_pred HHHHHHhhhcHHHHHHHHHHhHhhhCCC-ccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 002692 7 LFNCYVREYSFVKQQQTAIKMYKHAGEE-RFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYIS 85 (892)
Q Consensus 7 lF~ayvR~~d~kkqQQ~AmkL~K~f~~~-rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~~ 85 (892)
+=.+|.+..||.+.-.+.-.+.|..|-. +++ -|.|+.|.-.. +.-.|..||+-+++.. + ..+|.....--
T Consensus 359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m--eiyST~LWHLq--~~v~Ls~Laq~Li~~~----~-~sPesWca~GN 429 (638)
T KOG1126|consen 359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGM--EIYSTTLWHLQ--DEVALSYLAQDLIDTD----P-NSPESWCALGN 429 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccch--hHHHHHHHHHH--hhHHHHHHHHHHHhhC----C-CCcHHHHHhcc
Confidence 3346667777777777766666666632 222 23345554442 2335667888777662 2 56777777777
Q ss_pred HHHHcCChhHHHHHHhhhcccchhcHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002692 86 ILEQQSKYGDALEILSGTLGSLLVIEVD---KLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHY 152 (892)
Q Consensus 86 ILe~qgK~~EALelL~~~Lg~~l~~~~e---~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~y 152 (892)
-+..|+.++.|++..+..+. +++. --.|.+--+...+.++.|...++..|..+|++|..|-++
T Consensus 430 cfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL 495 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence 88888999999988876422 1110 011223222345677888899999999999999988755
No 69
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=87.26 E-value=9.2 Score=44.51 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=78.6
Q ss_pred HHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 002692 7 LFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISI 86 (892)
Q Consensus 7 lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~~I 86 (892)
++...-..+.|..+..+--+|.+..|+ .+.+++-++.... .+.+. -+++.+++.+.+ ++.+-+.+....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe----v~~~LA~v~l~~~--~E~~A----I~ll~~aL~~~p-~d~~LL~~Qa~f 243 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE----VAVLLARVYLLMN--EEVEA----IRLLNEALKENP-QDSELLNLQAEF 243 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc----HHHHHHHHHHhcC--cHHHH----HHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 333344455676666677777777665 3444443333322 22333 344555554444 457778888899
Q ss_pred HHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002692 87 LEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKI 138 (892)
Q Consensus 87 Le~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~L 138 (892)
|...++++.|+++....+. ..+.+-+-|...+++|.++|+|+.|......+
T Consensus 244 Ll~k~~~~lAL~iAk~av~-lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVE-LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHhcCCHHHHHHHHHHHHH-hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999986432 34556667888899999999999998654443
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=87.20 E-value=13 Score=41.03 Aligned_cols=94 Identities=21% Similarity=0.187 Sum_probs=64.6
Q ss_pred HHHHHHhhcCCCCchHH---HHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002692 63 GLLKKHVASHSLHEPEA---LIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKIL 139 (892)
Q Consensus 63 kmleK~i~~~~iet~EE---l~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LL 139 (892)
.-+.+.+...++..++. ......++...|++++|+..+..-+.. -+...+-+...+.++...|++++|.+.+.+.|
T Consensus 47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 47 ARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL-RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444344444332 333336888999999999888754331 22234456677889999999999999999999
Q ss_pred HhCCCCHHHHHHHHHhhh
Q 002692 140 ELSPDDWECFLHYLGCLL 157 (892)
Q Consensus 140 e~npDDW~~w~~yLda~~ 157 (892)
+.+|++-..|...-.+..
T Consensus 126 ~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 126 ELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HhCCCCHHHHHHHHHHHH
Confidence 999999888766554443
No 71
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=87.17 E-value=9.9 Score=34.56 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhhhcccc--hhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002692 79 ALIVYISILEQQSKYGDALEILSGTLGSL--LVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDD 145 (892)
Q Consensus 79 El~LY~~ILe~qgK~~EALelL~~~Lg~~--l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDD 145 (892)
.++--...+..+|++++|.+.+..-+... -....+.....+.++.+.|++++|...++.++...|++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 44444577788999999999987543211 01113344567889999999999999999999988875
No 72
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.52 E-value=1.9 Score=30.99 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002692 114 KLRMQGRLLARQGDYTAAAQIYKKILELSPDD 145 (892)
Q Consensus 114 ~L~Lka~lL~klg~weea~~~~k~LLe~npDD 145 (892)
.+...+.++.+.|++++|.+.+++.+..+|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 35567889999999999999999999999986
No 73
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=85.22 E-value=3.1 Score=35.31 Aligned_cols=41 Identities=34% Similarity=0.605 Sum_probs=35.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcCC
Q 002692 120 RLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDD 160 (892)
Q Consensus 120 ~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el~ 160 (892)
.++.+.++|+++.+++..++..+|+++..|..+=.+.+..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g 43 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG 43 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc
Confidence 46778999999999999999999999999988777766543
No 74
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=84.22 E-value=10 Score=31.23 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=50.0
Q ss_pred HHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 002692 84 ISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLL 157 (892)
Q Consensus 84 ~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~ 157 (892)
..++..+|++++|++.+..-+.. .+.....+...+.++...++++++.+.++..+...|++...|..+.....
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 35666788999998888753221 11122334455677788899999999999999988888766665554443
No 75
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=83.61 E-value=3.1 Score=36.71 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=50.6
Q ss_pred cCChhHHHHHHhhhcccchhc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcCC
Q 002692 90 QSKYGDALEILSGTLGSLLVI-EVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDD 160 (892)
Q Consensus 90 qgK~~EALelL~~~Lg~~l~~-~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el~ 160 (892)
+|+|++|+.+.+.-+...-.. ....+...|.++-+.|+|++|.+++++ +..++.+......+-.|.++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence 788999998887533211111 333455568999999999999999999 8788888777766777777764
No 76
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.72 E-value=2.7 Score=30.53 Aligned_cols=32 Identities=34% Similarity=0.587 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002692 114 KLRMQGRLLARQGDYTAAAQIYKKILELSPDD 145 (892)
Q Consensus 114 ~L~Lka~lL~klg~weea~~~~k~LLe~npDD 145 (892)
-+..+|.++...|++++|.+.|++.|+.+|+|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 35567889999999999999999999999975
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=82.66 E-value=15 Score=40.73 Aligned_cols=86 Identities=20% Similarity=0.124 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002692 59 LLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKI 138 (892)
Q Consensus 59 ~LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~L 138 (892)
..|.....++++..+ ..++.......++..+|++++|++.++.-+. .-+....-+..++.++...|++++|.+.++..
T Consensus 81 ~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a 158 (296)
T PRK11189 81 ALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLE-LDPTYNYAYLNRGIALYYGGRYELAQDDLLAF 158 (296)
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 355566666665554 4565666666999999999999998886442 11222334455678888999999999999999
Q ss_pred HHhCCCCH
Q 002692 139 LELSPDDW 146 (892)
Q Consensus 139 Le~npDDW 146 (892)
+..+|+|-
T Consensus 159 l~~~P~~~ 166 (296)
T PRK11189 159 YQDDPNDP 166 (296)
T ss_pred HHhCCCCH
Confidence 99999985
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=82.32 E-value=8 Score=43.01 Aligned_cols=98 Identities=22% Similarity=0.303 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHH-----HHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHH
Q 002692 58 LLLAEGLLKKHVASHSLHEPEALIV-----YISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAA 132 (892)
Q Consensus 58 L~LA~kmleK~i~~~~iet~EEl~L-----Y~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~ 132 (892)
..||.++++++.+ +... ++.. |+.+-...+++++|.-+.+. +...++..+..+.-++-+....|+|++|.
T Consensus 147 ~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~E-l~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 147 PDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEE-LSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHH-HHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4678888877632 2222 2221 12333334578888777764 44443333444556677888999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhhcCC
Q 002692 133 QIYKKILELSPDDWECFLHYLGCLLEDD 160 (892)
Q Consensus 133 ~~~k~LLe~npDDW~~w~~yLda~~el~ 160 (892)
+..++.|..+|.|-++.-..+-+...++
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence 9999999999999999888888766554
No 79
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=82.20 E-value=13 Score=42.36 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=55.3
Q ss_pred HHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 002692 85 SILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 159 (892)
Q Consensus 85 ~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el 159 (892)
.-+-..|+|++|++++...+.. -+.....+..++.++.++|++++|...++.+|..+|++-..|..+-.+...+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~-~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL-DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 3444678999999988764431 1222345566788899999999999999999999999988887665555444
No 80
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=81.35 E-value=12 Score=30.76 Aligned_cols=83 Identities=23% Similarity=0.239 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002692 60 LAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKIL 139 (892)
Q Consensus 60 LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LL 139 (892)
-|.+.+.+.+...+ .+..-...+..++..+|++++|.+.+...+.. .+....-+...+.++...|+++++...+..++
T Consensus 18 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 18 EALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455555544333 22334455558888899999999999864321 11122334555678888999999999999998
Q ss_pred HhCCC
Q 002692 140 ELSPD 144 (892)
Q Consensus 140 e~npD 144 (892)
..+|+
T Consensus 96 ~~~~~ 100 (100)
T cd00189 96 ELDPN 100 (100)
T ss_pred ccCCC
Confidence 87664
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=81.10 E-value=95 Score=34.39 Aligned_cols=134 Identities=16% Similarity=0.001 Sum_probs=78.2
Q ss_pred hhcHHHHHHHHHHhHhhhCCC--ccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHH---HHHHHHH
Q 002692 14 EYSFVKQQQTAIKMYKHAGEE--RFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALI---VYISILE 88 (892)
Q Consensus 14 ~~d~kkqQQ~AmkL~K~f~~~--rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~---LY~~ILe 88 (892)
.+++..+++...+..+..+.+ .+-.+.+-++.+.... +...-. +.+++++...|- +...+. .|.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g--~~~~A~----~~~~~~l~~~P~-~~~a~~~~~~~~~~~~ 91 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAG--DLPKAL----ALLEQLLDDYPR-DLLALKLHLGAFGLGD 91 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC--CHHHHH----HHHHHHHHHCCC-cHHHHHHhHHHHHhcc
Confidence 366777777777777666643 3555555555444432 222233 344444433442 222222 2334444
Q ss_pred HcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 002692 89 QQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGC 155 (892)
Q Consensus 89 ~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda 155 (892)
..++..++.+.+.. .....+.....+.+.+..+...|++++|.+.+++.++.+|++-..+..+-..
T Consensus 92 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 92 FSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred cccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 56777777777764 2212222233445667888999999999999999999999985554444333
No 82
>PLN02789 farnesyltranstransferase
Probab=80.90 E-value=13 Score=41.93 Aligned_cols=77 Identities=10% Similarity=0.145 Sum_probs=58.0
Q ss_pred HHH-HHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 002692 79 ALI-VYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQG-DYTAAAQIYKKILELSPDDWECFLHYLGCL 156 (892)
Q Consensus 79 El~-LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg-~weea~~~~k~LLe~npDDW~~w~~yLda~ 156 (892)
+++ .+-.|+..++++++|+++.+.-+. .-+.....|..|+.++.++| +++++.+.+.++++.+|+++..|.+---.+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~-lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIR-LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 444 444888889999999999885332 11223345778888888888 679999999999999999999997654444
No 83
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=80.39 E-value=7.5 Score=37.81 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHhC
Q 002692 353 ASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 414 (892)
Q Consensus 353 Aa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~L 414 (892)
+...+...+...+ ..-+|+.+++.++..+|+|=.+...++++|...|....|.++|+.+
T Consensus 64 ~~~~l~~~~~~~~---~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAG---DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4444444444434 5567888999999999999999999999999999999999999754
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=79.76 E-value=1e+02 Score=34.05 Aligned_cols=128 Identities=11% Similarity=-0.066 Sum_probs=77.5
Q ss_pred HHHhhhcHHHHHHHHHHhHhhhCCCccHHHHH-HHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 002692 10 CYVREYSFVKQQQTAIKMYKHAGEERFLLWAV-CSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILE 88 (892)
Q Consensus 10 ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaV-mS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~~ILe 88 (892)
.+...+|+..+.+...++....|++. .-|.+ ...+..... .+ . ...+.+.+..... ......--...+..++.
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~-~a~~~~~~~~~~~~~-~~--~-~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDL-LALKLHLGAFGLGDF-SG--M-RDHVARVLPLWAP-ENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHHhHHHHHhccc-cc--C-chhHHHHHhccCc-CCCCcHHHHHHHHHHHH
Confidence 45677899999888888888888764 22222 111111111 11 1 1223344443211 11122333345557999
Q ss_pred HcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002692 89 QQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPD 144 (892)
Q Consensus 89 ~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npD 144 (892)
.+|++++|.+.+..-+.. -+....-....+.++.+.|+++++..++.+.+...|+
T Consensus 126 ~~G~~~~A~~~~~~al~~-~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 126 EAGQYDRAEEAARRALEL-NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HcCCHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 999999999999864432 1111223345578889999999999999999997664
No 85
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.60 E-value=3.7 Score=29.64 Aligned_cols=32 Identities=34% Similarity=0.656 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002692 114 KLRMQGRLLARQGDYTAAAQIYKKILELSPDD 145 (892)
Q Consensus 114 ~L~Lka~lL~klg~weea~~~~k~LLe~npDD 145 (892)
.+...+.++.+.|++++|.+.+++.++.+||+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 35667889999999999999999999998864
No 86
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.28 E-value=4.9 Score=42.29 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=48.6
Q ss_pred HHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002692 85 SILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPD 144 (892)
Q Consensus 85 ~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npD 144 (892)
+|+-.+|++++|++.|++.-+..+..- ...+|++++...|+-++|...|++.|+.+++
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~--~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAI--VAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHH--HHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 888899999999999999877655321 2357999999999999999999999997544
No 87
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=79.00 E-value=33 Score=35.80 Aligned_cols=86 Identities=19% Similarity=0.209 Sum_probs=59.2
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHH-HHcCC--hhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002692 61 AEGLLKKHVASHSLHEPEALIVYISIL-EQQSK--YGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKK 137 (892)
Q Consensus 61 A~kmleK~i~~~~iet~EEl~LY~~IL-e~qgK--~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~ 137 (892)
|.....+++.-.+ .+.+-..-|..+| ...|+ +++|.++++.-+.. -+...+-+.+.+..+.+.|++++|...|++
T Consensus 92 A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-DANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444555554443 4565666666776 56677 59999999865432 223344566778888999999999999999
Q ss_pred HHHhCCCCHHH
Q 002692 138 ILELSPDDWEC 148 (892)
Q Consensus 138 LLe~npDDW~~ 148 (892)
+|+.+|.|=+-
T Consensus 170 aL~l~~~~~~r 180 (198)
T PRK10370 170 VLDLNSPRVNR 180 (198)
T ss_pred HHhhCCCCccH
Confidence 99987654444
No 88
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=78.38 E-value=5.2 Score=33.53 Aligned_cols=46 Identities=24% Similarity=0.196 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcC-ChHHHHHHHH
Q 002692 367 YGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLG-ALPLAYEWYK 412 (892)
Q Consensus 367 ~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LG-a~s~A~~~y~ 412 (892)
.+..-+|+..++.++..+|.++.+...+..+|..+| ....|.+.|.
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 347789999999999999999999999999999999 7999999886
No 89
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=78.17 E-value=1.9e+02 Score=36.02 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHH-HHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHH-HHHHcCCHHHHHHHHH
Q 002692 59 LLAEGLLKKHVASHSLHEPEALIVYI-SILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGR-LLARQGDYTAAAQIYK 136 (892)
Q Consensus 59 ~LA~kmleK~i~~~~iet~EEl~LY~-~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~-lL~klg~weea~~~~k 136 (892)
+=|..++..+++.++ +.|++.|.. ++.-....+++|-.++....+ ..+.++..||.. +..-+++.++|..+|.
T Consensus 601 ~~ar~il~~af~~~p--nseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 601 PAARVILDQAFEANP--NSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred HHHHHHHHHHHHhCC--CcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 446667777766554 577888887 666677888888888875322 234567777763 3345788889999998
Q ss_pred HHHHhCCCCHHHHH
Q 002692 137 KILELSPDDWECFL 150 (892)
Q Consensus 137 ~LLe~npDDW~~w~ 150 (892)
+.|..-||--..|.
T Consensus 676 e~lk~fp~f~Kl~l 689 (913)
T KOG0495|consen 676 EALKSFPDFHKLWL 689 (913)
T ss_pred HHHHhCCchHHHHH
Confidence 88888777666664
No 90
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=78.07 E-value=24 Score=36.00 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHHcCChhHHHHHHhhhcccchh-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002692 76 EPEALIVYISILEQQSKYGDALEILSGTLGSLLV-IEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLG 154 (892)
Q Consensus 76 t~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~-~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLd 154 (892)
+=+.++=|.--|-.+|+++||.++..- +. .+. ...+-+.=-+-++...|+|++|.+.|...+..+|||-..+.+.=.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~-L~-~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQL-LT-IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH-HH-HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 445677788899999999999988863 11 111 112233334567888999999999999999999999999998888
Q ss_pred hhhcCC
Q 002692 155 CLLEDD 160 (892)
Q Consensus 155 a~~el~ 160 (892)
|.+.++
T Consensus 112 c~L~lG 117 (157)
T PRK15363 112 CYLACD 117 (157)
T ss_pred HHHHcC
Confidence 887765
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.51 E-value=1.8e+02 Score=35.57 Aligned_cols=127 Identities=20% Similarity=0.181 Sum_probs=81.5
Q ss_pred HHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHH-HHHHHH
Q 002692 9 NCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALI-VYISIL 87 (892)
Q Consensus 9 ~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~-LY~~IL 87 (892)
..+...++|.++-|++-++-...|++..-|--=.-.+.|-. ++ .=|.+++++... ....--+. =-.-+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~------ky-~~ALk~ikk~~~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLD------KY-EDALKLIKKNGA---LLVINSFFFEKAYCE 89 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhh------HH-HHHHHHHHhcch---hhhcchhhHHHHHHH
Confidence 34667889999999999998888887544432221122211 11 123366666421 11111110 011234
Q ss_pred HHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002692 88 EQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECF 149 (892)
Q Consensus 88 e~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w 149 (892)
=++++.+||++.+++- . +.....+.+++.++-++|++++++++|+.|+..+.||.+.=
T Consensus 90 Yrlnk~Dealk~~~~~--~--~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~ 147 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGL--D--RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE 147 (652)
T ss_pred HHcccHHHHHHHHhcc--c--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence 4679999999999841 1 22233567899999999999999999999999999988875
No 92
>PLN02789 farnesyltranstransferase
Probab=76.87 E-value=76 Score=35.91 Aligned_cols=115 Identities=10% Similarity=0.084 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHHH-HHHHHcCCh--hHHHHHHhhhcccchhcHH
Q 002692 36 FLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYI-SILEQQSKY--GDALEILSGTLGSLLVIEV 112 (892)
Q Consensus 36 Y~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~-~ILe~qgK~--~EALelL~~~Lg~~l~~~~ 112 (892)
|..|..-..++..... -+.=|...++++++..+ ++.+ +.-|- -+++..|++ ++++++++.-+.. =+.--
T Consensus 71 ytaW~~R~~iL~~L~~-----~l~eeL~~~~~~i~~np-knyq-aW~~R~~~l~~l~~~~~~~el~~~~kal~~-dpkNy 142 (320)
T PLN02789 71 YTVWHFRRLCLEALDA-----DLEEELDFAEDVAEDNP-KNYQ-IWHHRRWLAEKLGPDAANKELEFTRKILSL-DAKNY 142 (320)
T ss_pred HHHHHHHHHHHHHcch-----hHHHHHHHHHHHHHHCC-cchH-HhHHHHHHHHHcCchhhHHHHHHHHHHHHh-CcccH
Confidence 7788777666655420 11112234444443333 3333 33333 466777764 6677777643321 11123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhc
Q 002692 113 DKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLE 158 (892)
Q Consensus 113 e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~e 158 (892)
.-|.-|+-++.+.|+|+++.+.|.++|+.+|+|...|.+-.-...+
T Consensus 143 ~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 143 HAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 3577778888899999999999999999999999999766554443
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.64 E-value=5.5 Score=42.93 Aligned_cols=72 Identities=25% Similarity=0.244 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHH-hCCchhHHHHhh
Q 002692 353 ASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYK-ALDVKNILMETV 424 (892)
Q Consensus 353 Aa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~-~LdIK~IQ~DTL 424 (892)
|+.+-+++...-=..+...+|-.-||.+|.++|.++...+.++.+|..+|-.+.|.+.|+ .|.++.=+=|-|
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVL 106 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL 106 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchh
Confidence 555555553211112355788889999999999999999999999999999999999998 445444443333
No 94
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=75.56 E-value=29 Score=34.94 Aligned_cols=78 Identities=19% Similarity=0.124 Sum_probs=56.1
Q ss_pred HHHHHHHHcCChhHHHHHHhhhcccchh--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 002692 82 VYISILEQQSKYGDALEILSGTLGSLLV--IEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 159 (892)
Q Consensus 82 LY~~ILe~qgK~~EALelL~~~Lg~~l~--~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el 159 (892)
-...++...|++++|++.+..-+...-. .....+...+.++.+.|++++|...+++.+...|++...+..+-.+...+
T Consensus 40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 3337777889999999988754321111 11233455578889999999999999999999999998887665554443
No 95
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.52 E-value=30 Score=39.21 Aligned_cols=119 Identities=20% Similarity=0.254 Sum_probs=79.5
Q ss_pred HHHHHHHHhHhhhCCC---ccHHHHHHH--HHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCCh
Q 002692 19 KQQQTAIKMYKHAGEE---RFLLWAVCS--IQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKY 93 (892)
Q Consensus 19 kqQQ~AmkL~K~f~~~---rY~fWaVmS--~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~ 93 (892)
.|-..+..+.|...+. .-+||-+.. +|+-- -++.=|+|.+.... ..++.++.+.+.-+|...-++.
T Consensus 202 ~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrL-------gm~r~AekqlqssL--~q~~~~dTfllLskvY~ridQP 272 (478)
T KOG1129|consen 202 CQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRL-------GMPRRAEKQLQSSL--TQFPHPDTFLLLSKVYQRIDQP 272 (478)
T ss_pred HHHHHHHHhccccccccchHhHHHHHHHHHHHHHh-------cChhhhHHHHHHHh--hcCCchhHHHHHHHHHHHhccH
Confidence 3445556666666553 466775542 22110 12345666666654 3456787888888999999999
Q ss_pred hHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002692 94 GDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWE 147 (892)
Q Consensus 94 ~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~ 147 (892)
..|+.++..-+. .++.+...+.=++++.+..|+.+++.++||.+|...|.|-.
T Consensus 273 ~~AL~~~~~gld-~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 273 ERALLVIGEGLD-SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred HHHHHHHhhhhh-cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence 999999976443 23433333334578899999999999999999998665543
No 96
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=73.07 E-value=5.2 Score=45.00 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHhC
Q 002692 349 LLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 414 (892)
Q Consensus 349 l~LLAa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~L 414 (892)
+-+..|++...+.......+.+-+|..+|+.+++-+|.+....+.+-+|+...|.++.|.++|+..
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 345677888877765555667888999999999999999999999999999999999999999653
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=72.58 E-value=62 Score=37.54 Aligned_cols=125 Identities=21% Similarity=0.264 Sum_probs=92.4
Q ss_pred chHHHHHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHH
Q 002692 2 DHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALI 81 (892)
Q Consensus 2 ELl~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~ 81 (892)
||....=..+++-++...++++-..=.|..-+++ .+..+=. ..+.++.++.+++++-+.++ + +++ .+.
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~-l~~~d~~~l~k~~e~~l~~h----~-~~p-~L~ 331 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPR-LRPGDPEPLIKAAEKWLKQH----P-EDP-LLL 331 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhh-cCCCCchHHHHHHHHHHHhC----C-CCh-hHH
Confidence 5666677788999999999998888877776665 2222211 22345678888888888774 2 333 666
Q ss_pred HHH-HHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002692 82 VYI-SILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILE 140 (892)
Q Consensus 82 LY~-~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe 140 (892)
.++ +.+-+++.|.+|-+.++..+. ...+.....+.+..+.++|+.+++.+..++.|.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 666 899999999999999986442 344555667778999999999999999999875
No 98
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=70.91 E-value=30 Score=41.62 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002692 77 PEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWEC 148 (892)
Q Consensus 77 ~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~ 148 (892)
+--+...-.+..++++++||++..+..|- ..+...+--.--|-++..+|+.+.|.+++.+.|..+|||-..
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~-l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALL-LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 33455666999999999999999886432 111111111112456788999999999999999999999433
No 99
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.52 E-value=57 Score=35.96 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=69.6
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHc---CChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHH
Q 002692 53 GGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQ---SKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYT 129 (892)
Q Consensus 53 ~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~~ILe~q---gK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~we 129 (892)
.++.++.|..-|+..... +--..++..||-+|.-.. |....|-+-++. |-..++.......|+|-+++-.|+|+
T Consensus 27 nseevv~l~~~~~~~~k~--~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~-L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKS--GALGDEIWTLYEQVFIAALDTGRDDLAQKCINQ-LRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred CHHHHHHHHHHHHHHhhh--cccCchHHHHHHHHHHHHHHhcchHHHHHHHHH-HHHhCCCChhHHHHHHHHHHHhhchh
Confidence 356777888888777642 222345677776665433 555555544442 11223333444578888889999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhhhc
Q 002692 130 AAAQIYKKILELSPDDWECFLHYLGCLLE 158 (892)
Q Consensus 130 ea~~~~k~LLe~npDDW~~w~~yLda~~e 158 (892)
+|.++|..+|+.+|-|...++.=+.....
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKA 132 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 99999999999999999999876655543
No 100
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=70.24 E-value=91 Score=34.89 Aligned_cols=114 Identities=21% Similarity=0.110 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHH---hCCchhHHHHhhhhhhhhhhhcccc-hhhh
Q 002692 366 NYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYK---ALDVKNILMETVSHHILPQMLVSSL-WVES 441 (892)
Q Consensus 366 ~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~---~LdIK~IQ~DTLghlil~rlst~p~-~~~~ 441 (892)
+....-+.+.-||.-|.++|.|.+-=.+|.++|+.+|.++.|...|+ .|+=+|.+.=..-=-++.+ +..+. -...
T Consensus 134 ~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~-~a~~~~ta~a 212 (287)
T COG4235 134 AEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY-QAGQQMTAKA 212 (287)
T ss_pred CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcCCcccHHH
Confidence 44456777888999999999999999999999999999999998887 6777776532211111211 22222 2346
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhcCChhhHHHHHH
Q 002692 442 NNLLRDYLRFMDDHLRESADLTFLAYRHRNYSKVIEFVQ 480 (892)
Q Consensus 442 ~~ll~~~lrfy~~s~ke~~d~I~~Afe~GsYSKI~Efie 480 (892)
.+++++.++.=.++.+-..-.-..+|+.|.|-.-...-+
T Consensus 213 ~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq 251 (287)
T COG4235 213 RALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQ 251 (287)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 677777776544445555666678899999987665543
No 101
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=70.17 E-value=22 Score=30.50 Aligned_cols=61 Identities=25% Similarity=0.391 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCChhHHHHHHhhhccc--chhcH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002692 81 IVYISILEQQSKYGDALEILSGTLGS--LLVIE----VDKLRMQGRLLARQGDYTAAAQIYKKILEL 141 (892)
Q Consensus 81 ~LY~~ILe~qgK~~EALelL~~~Lg~--~l~~~----~e~L~Lka~lL~klg~weea~~~~k~LLe~ 141 (892)
..+..++..+|+|++|++.++.-+.- ..+.. ..-+.--+.++...|++++|.+++++.++.
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34458899999999999999864322 11111 122344468889999999999999998863
No 102
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=68.55 E-value=1.3e+02 Score=34.35 Aligned_cols=135 Identities=19% Similarity=0.171 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhHhhhCCC-ccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHH
Q 002692 4 MMGLFNCYVREYSFVKQQQTAIKMYKHAGEE-RFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIV 82 (892)
Q Consensus 4 l~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~-rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~L 82 (892)
+-+|-.=|=...+|.|+=-+|-+|.|..+++ +.-.=-..+=+.|.....+ . ..=|...++|+.+.++- ....-++
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~--~-~d~A~~~l~kAlqa~~~-cvRAsi~ 219 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS--D-VDRARELLKKALQADKK-CVRASII 219 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh--h-HHHHHHHHHHHHhhCcc-ceehhhh
Confidence 3466677778899999999999999998865 2211111122222222111 1 12266678888776652 2234456
Q ss_pred HHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002692 83 YISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELS 142 (892)
Q Consensus 83 Y~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~n 142 (892)
.-+|.-.+|.|+.|++.++.-+...-..-.+.+.+-..+|.++|+.++..+..++..+.+
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 678888999999999999864333211112333344478889999888888877777753
No 103
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=68.05 E-value=42 Score=39.81 Aligned_cols=84 Identities=21% Similarity=0.103 Sum_probs=63.8
Q ss_pred chHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 002692 76 EPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGC 155 (892)
Q Consensus 76 t~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda 155 (892)
++=-..+-..|+-+++|..||.+.+..-+. ..+...-.....+..|.+.|+.+++....+..+..+|+|=..|..+-.+
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~-l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqa 417 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALA-LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQA 417 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHH
Confidence 333334445899999999999999986433 2222222334567899999999999999999999999999999999888
Q ss_pred hhcCC
Q 002692 156 LLEDD 160 (892)
Q Consensus 156 ~~el~ 160 (892)
..+++
T Consensus 418 y~~~g 422 (484)
T COG4783 418 YAELG 422 (484)
T ss_pred HHHhC
Confidence 76654
No 104
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.03 E-value=9.8 Score=26.90 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002692 116 RMQGRLLARQGDYTAAAQIYKKILELSPD 144 (892)
Q Consensus 116 ~Lka~lL~klg~weea~~~~k~LLe~npD 144 (892)
...|.++.+.|++++|.+.++.++...||
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34577888899999999999999999887
No 105
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=67.96 E-value=57 Score=32.79 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCC
Q 002692 79 ALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGD--------------YTAAAQIYKKILELSPD 144 (892)
Q Consensus 79 El~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~--------------weea~~~~k~LLe~npD 144 (892)
....+..++...|++++|++.+..-+.. .+.....+...+.++...|+ ++++.+.+++.+..+|+
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALEL-NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 4445558888999999999998764331 11112233444566666555 57888888889999999
Q ss_pred CHHHHHHHHHhh
Q 002692 145 DWECFLHYLGCL 156 (892)
Q Consensus 145 DW~~w~~yLda~ 156 (892)
|+..-..++..+
T Consensus 153 ~~~~~~~~~~~~ 164 (172)
T PRK02603 153 NYIEAQNWLKTT 164 (172)
T ss_pred hHHHHHHHHHhc
Confidence 965555555444
No 106
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=67.08 E-value=42 Score=32.75 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHcCChHHHHHHHHh
Q 002692 347 EELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHA---WQYKVLLVHLYSHLGALPLAYEWYKA 413 (892)
Q Consensus 347 Del~LLAa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N---~~lkLlLirLY~~LGa~s~A~~~y~~ 413 (892)
..+..+|...+...+...+ .+-+|+..|+.++.+.|.+ ...++.|+++|...|-++.|..++..
T Consensus 44 s~ya~~A~l~lA~~~~~~g---~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 44 SPYAALAALQLAKAAYEQG---DYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred ChHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3455666555666555444 6678999999999988664 45789999999999999999999866
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=66.51 E-value=1.7e+02 Score=30.48 Aligned_cols=148 Identities=11% Similarity=0.009 Sum_probs=79.9
Q ss_pred HHHHHHHhhhcHHHHHHHHHHhHhhhCCCcc--HHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCC--CchHHHH
Q 002692 6 GLFNCYVREYSFVKQQQTAIKMYKHAGEERF--LLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSL--HEPEALI 81 (892)
Q Consensus 6 ~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY--~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~i--et~EEl~ 81 (892)
..=..+.+.++|..+....-++.+.+|.+++ .-|.-....+.... +.. -|...+++.+...|- .....+.
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~--~~~----~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG--DYA----EAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC--CHH----HHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445678899999988888888888887642 23333333332221 112 233334443332331 1111222
Q ss_pred HHHHHHHHc--------CChhHHHHHHhhhcccc--hhcHH--------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 002692 82 VYISILEQQ--------SKYGDALEILSGTLGSL--LVIEV--------------DKLRMQGRLLARQGDYTAAAQIYKK 137 (892)
Q Consensus 82 LY~~ILe~q--------gK~~EALelL~~~Lg~~--l~~~~--------------e~L~Lka~lL~klg~weea~~~~k~ 137 (892)
....+.... |++++|++.++.-+... -.... ......+.++.+.|++++|...++.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 222444333 77888888887532110 00000 0111335677889999999999999
Q ss_pred HHHhCCCCH---HHHHHHHHhhhcC
Q 002692 138 ILELSPDDW---ECFLHYLGCLLED 159 (892)
Q Consensus 138 LLe~npDDW---~~w~~yLda~~el 159 (892)
++...|++- ..|..+..+..++
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~l 216 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLKL 216 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHHc
Confidence 999988753 3444444444333
No 108
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=66.42 E-value=7.3 Score=29.08 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=28.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHcCChHHHH
Q 002692 377 LEFGLTVRRHAWQYKVLLVHLYSHLGALPLAY 408 (892)
Q Consensus 377 LE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~ 408 (892)
.+.++..+|.|+.....|..+|...|....|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 35678899999999999999999999998875
No 109
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=65.06 E-value=35 Score=43.07 Aligned_cols=92 Identities=25% Similarity=0.260 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHH--HHHHHcCCHHHHH
Q 002692 55 EKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQG--RLLARQGDYTAAA 132 (892)
Q Consensus 55 ~kLL~LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka--~lL~klg~weea~ 132 (892)
++-+....+++.|+ | .++-...|=.-+|.++||++||++.|+..-+..-+ +.+.++. .++..+|+++++.
T Consensus 26 kkal~~~~kllkk~----P-n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~---D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 26 KKALAKLGKLLKKH----P-NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT---DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHC----C-CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC---chHHHHHHHHHHHHHhhhhHHH
Confidence 34455556666663 3 34445666668999999999999998865332222 3444444 6788999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHh
Q 002692 133 QIYKKILELSPDDWECFLHYLGC 155 (892)
Q Consensus 133 ~~~k~LLe~npDDW~~w~~yLda 155 (892)
.+|++.+..+|. ..-..+|+.|
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFma 119 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMA 119 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHH
Confidence 999999999988 5555555544
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=63.70 E-value=1.2e+02 Score=40.46 Aligned_cols=146 Identities=19% Similarity=0.237 Sum_probs=92.9
Q ss_pred HhhhcHHHHHHHHHHhHhhhC----CCccHHHHHHHHHHHhhcCCc--------------h----hhH---------HHH
Q 002692 12 VREYSFVKQQQTAIKMYKHAG----EERFLLWAVCSIQLQVLCGNG--------------G----EKL---------LLL 60 (892)
Q Consensus 12 vR~~d~kkqQQ~AmkL~K~f~----~~rY~fWaVmS~~LQa~~~~~--------------~----~kL---------L~L 60 (892)
+..++..++-++|=.--|.-. +++--.|.++--+.-+..+.. + .+| ..+
T Consensus 1469 LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~ 1548 (1710)
T KOG1070|consen 1469 LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDE 1548 (1710)
T ss_pred hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchh
Confidence 456677777776655545442 246778877766655543211 0 000 122
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhc--HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002692 61 AEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVI--EVDKLRMQGRLLARQGDYTAAAQIYKKI 138 (892)
Q Consensus 61 A~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~--~~e~L~Lka~lL~klg~weea~~~~k~L 138 (892)
|-.++..+++.-+ ++..-...|...|-.|.+-++|-.+|...|.. ++. ..+.+.-=|.+.-+.|+-+.+..++..+
T Consensus 1549 A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1549 ADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred HHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence 3333333322123 56777788888888888888888888765432 322 2222222245667899999999999999
Q ss_pred HHhCCCCHHHHHHHHHhhhcC
Q 002692 139 LELSPDDWECFLHYLGCLLED 159 (892)
Q Consensus 139 Le~npDDW~~w~~yLda~~el 159 (892)
|...|-.-+.|.-|||.-.+.
T Consensus 1627 l~ayPKRtDlW~VYid~eik~ 1647 (1710)
T KOG1070|consen 1627 LSAYPKRTDLWSVYIDMEIKH 1647 (1710)
T ss_pred HhhCccchhHHHHHHHHHHcc
Confidence 999999999999999987654
No 111
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=62.83 E-value=3.9e+02 Score=33.41 Aligned_cols=45 Identities=11% Similarity=-0.026 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 002692 368 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYK 412 (892)
Q Consensus 368 ~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~ 412 (892)
+.+.+|=.|||.+..++|.|..+-|-.||.=.++|+.+.|..+..
T Consensus 733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 378999999999999999999999999999999999998877653
No 112
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=60.14 E-value=1.1e+02 Score=33.58 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=44.1
Q ss_pred HHcCChhHHHHHHhhhcccchh---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002692 88 EQQSKYGDALEILSGTLGSLLV---IEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDD 145 (892)
Q Consensus 88 e~qgK~~EALelL~~~Lg~~l~---~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDD 145 (892)
..+|+|++|++.+..-+. ..+ ..++-.+..|.++...|++++|...++.++...||+
T Consensus 154 ~~~~~y~~Ai~af~~fl~-~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK-KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HhcCCHHHHHHHHHHHHH-HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 446999999988876432 122 224456777899999999999999999999988874
No 113
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=56.28 E-value=27 Score=29.09 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002692 114 KLRMQGRLLARQGDYTAAAQIYKKILELSPDDWEC 148 (892)
Q Consensus 114 ~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~ 148 (892)
-++.-|--..++|++++|...+..+|+..|+|=..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34555566789999999999999999999998776
No 114
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=53.91 E-value=22 Score=26.52 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=18.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 002692 118 QGRLLARQGDYTAAAQIYKKILE 140 (892)
Q Consensus 118 ka~lL~klg~weea~~~~k~LLe 140 (892)
.+.++.+.|+|++|.++|++.|.
T Consensus 5 Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 5 LGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 46888999999999999999665
No 115
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.36 E-value=87 Score=33.55 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=24.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002692 118 QGRLLARQGDYTAAAQIYKKILELSPD 144 (892)
Q Consensus 118 ka~lL~klg~weea~~~~k~LLe~npD 144 (892)
++..+.|++.|+.+.+-|.+.|+.||-
T Consensus 140 raaa~iKl~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 140 RAAALIKLRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred hHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence 567788999999999999999999774
No 116
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.32 E-value=49 Score=37.09 Aligned_cols=66 Identities=26% Similarity=0.304 Sum_probs=39.0
Q ss_pred HHHHHcCChhHHHHHHhhhcccchhcHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002692 85 SILEQQSKYGDALEILSGTLGSLLVIEVDKLRM-QGRLLARQGDYTAAAQIYKKILELSPDDWECFLHY 152 (892)
Q Consensus 85 ~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~L-ka~lL~klg~weea~~~~k~LLe~npDDW~~w~~y 152 (892)
-++-+.|.|++|++-.+..+. ++..--+.+. .+..+.-+|++++|.+.|++.|+..|||=.+|..+
T Consensus 123 AAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 123 AAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 455556777777666654321 2111111122 13566778899999999999999877765444433
No 117
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=53.19 E-value=1.6e+02 Score=29.37 Aligned_cols=113 Identities=17% Similarity=0.100 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHH
Q 002692 35 RFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASH--SLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEV 112 (892)
Q Consensus 35 rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~--~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~ 112 (892)
.-++|.......+.... ..-|...+.+++... +........-...++..+|++++|++.+...+... +...
T Consensus 34 ~a~~~~~~g~~~~~~g~------~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~ 106 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGE------YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLP 106 (168)
T ss_pred HHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcH
Confidence 46667666665554422 223444444443322 11122233334488899999999999987643211 1101
Q ss_pred HHH-------HHHHHHHHHcCCHH-------HHHHHHHHHHHhCCCCHHHHHHHHH
Q 002692 113 DKL-------RMQGRLLARQGDYT-------AAAQIYKKILELSPDDWECFLHYLG 154 (892)
Q Consensus 113 e~L-------~Lka~lL~klg~we-------ea~~~~k~LLe~npDDW~~w~~yLd 154 (892)
..+ ...++.+.+.|+++ ++..++++.+..+|++...-..++.
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 111 22334444778876 6666666777788877665554443
No 118
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=53.03 E-value=1.1e+02 Score=33.52 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHhhhccc--chhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002692 77 PEALIVYISILEQQSKYGDALEILSGTLGS--LLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDW 146 (892)
Q Consensus 77 ~EEl~LY~~ILe~qgK~~EALelL~~~Lg~--~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW 146 (892)
+...+....++..+|+|++|+.....-+.. .-+...+-+...+.++.+.|++++|...++.+++..|+.=
T Consensus 180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 444444558889999999999888753321 1122344555567888899999999999999999877643
No 119
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=52.57 E-value=1.2e+02 Score=29.36 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=48.4
Q ss_pred HHHHHHcCChhHHHHHHhhhcccchhcH-HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Q 002692 84 ISILEQQSKYGDALEILSGTLGSLLVIE-VDKLRM-QGRLLARQGDYTAAAQIYKKILELSPD-DWECFLHYL 153 (892)
Q Consensus 84 ~~ILe~qgK~~EALelL~~~Lg~~l~~~-~e~L~L-ka~lL~klg~weea~~~~k~LLe~npD-DW~~w~~yL 153 (892)
...+..+|+.++|+.+-...+..-+..+ ..+..+ .+..+..+|+++++....++.+...|| .|.....++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3678889999999998887655333322 223333 247788899999999999999998675 554444333
No 120
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.20 E-value=2.3e+02 Score=35.08 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=25.9
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 002692 123 ARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 159 (892)
Q Consensus 123 ~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el 159 (892)
.+.|..+.|.+.|+..|+..|.==+.|..+-.++.+.
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDK 333 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc
Confidence 3567777888888888887777666666666666543
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.57 E-value=44 Score=37.42 Aligned_cols=63 Identities=13% Similarity=0.220 Sum_probs=44.1
Q ss_pred HcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002692 89 QQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHY 152 (892)
Q Consensus 89 ~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~y 152 (892)
+.++|+||++.-...+. .-+...-....|+..+.++|.++.|.+-|+..|..+|-=|..|..+
T Consensus 93 ~~~~Y~eAv~kY~~AI~-l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIE-LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HhhhHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 34788888877765322 1111122344678899999999999999999999988766666543
No 122
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=51.52 E-value=6.1e+02 Score=32.16 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=42.0
Q ss_pred hcCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHh
Q 002692 363 RTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 413 (892)
Q Consensus 363 ~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~ 413 (892)
..| ...+-++..+|-.+++.+|.|++.=.-|..+...+|....|.+.|..
T Consensus 730 e~G-~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 730 ELG-SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HhC-CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 344 33455666788899999999999999999999999999999999863
No 123
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=51.16 E-value=1.3e+02 Score=29.99 Aligned_cols=70 Identities=17% Similarity=0.092 Sum_probs=50.1
Q ss_pred HHHHHHHcCChhHHHHHHhhhcccchh--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002692 83 YISILEQQSKYGDALEILSGTLGSLLV--IEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHY 152 (892)
Q Consensus 83 Y~~ILe~qgK~~EALelL~~~Lg~~l~--~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~y 152 (892)
...++..+|++++|+..+..-+...-. .....+.-.+.++.+.|++++|...++..+..+|+.-..|..+
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 336777789999999998865432111 1112344456888999999999999999999988876665443
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=48.34 E-value=60 Score=35.65 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhc
Q 002692 79 ALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLE 158 (892)
Q Consensus 79 El~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~e 158 (892)
++..|..-+-..|+-++.+.++..- ....+...+.+..++......|++.+|....+++.+.+|+||..|..+=-+..+
T Consensus 68 ~i~~~a~a~~~~G~a~~~l~~~~~~-~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 68 SIAKLATALYLRGDADSSLAVLQKS-AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHHHhcccccchHHHHhhh-hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH
Confidence 4455557777777777777777642 111222333444467888899999999999999999999999999876555544
Q ss_pred C
Q 002692 159 D 159 (892)
Q Consensus 159 l 159 (892)
+
T Consensus 147 ~ 147 (257)
T COG5010 147 L 147 (257)
T ss_pred c
Confidence 4
No 125
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.09 E-value=38 Score=23.40 Aligned_cols=30 Identities=37% Similarity=0.579 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 002692 126 GDYTAAAQIYKKILELSPDDWECFLHYLGC 155 (892)
Q Consensus 126 g~weea~~~~k~LLe~npDDW~~w~~yLda 155 (892)
|+++.+.+++...+...|.+=..|..|++-
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999999999999864
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=46.44 E-value=4.5e+02 Score=34.19 Aligned_cols=146 Identities=12% Similarity=0.070 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 002692 4 MMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVY 83 (892)
Q Consensus 4 l~~lF~ayvR~~d~kkqQQ~AmkL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY 83 (892)
+..+=++|=+.|++++.=++--++-+..|++....=++.-.+... +-++-..++.|-+..++..+ +..+...+.
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~----dL~KA~~m~~KAV~~~i~~k--q~~~~~e~W 192 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE----DKEKAITYLKKAIYRFIKKK--QYVGIEEIW 192 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHhhh--cchHHHHHH
Confidence 344556666777777776666666666676644433333333322 12233344444444444333 344455555
Q ss_pred HHHHHHc-CChhHHHHHHh---hhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 002692 84 ISILEQQ-SKYGDALEILS---GTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLL 157 (892)
Q Consensus 84 ~~ILe~q-gK~~EALelL~---~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~ 157 (892)
-.+++.. .+.++.+.++. +.++ .....+.+..--+.+.+.++|.++..+.+.+|+..|+|......+++|-.
T Consensus 193 ~k~~~~~~~d~d~f~~i~~ki~~~~~--~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 193 SKLVHYNSDDFDFFLRIERKVLGHRE--FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCcccchHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 5666654 34444443333 2222 11122233333477889999999999999999999987777777777754
No 127
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=46.09 E-value=85 Score=37.23 Aligned_cols=71 Identities=14% Similarity=-0.024 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002692 76 EPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEV---DKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWE 147 (892)
Q Consensus 76 t~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~---e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~ 147 (892)
+++...=+-.+|..+|+|+||+..++.-+.. -+... .-++-++-++.++|+.++|.+.+++.|+.++..|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL-NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHH
Confidence 3445555558999999999999999865431 12212 23677889999999999999999999997444443
No 128
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.75 E-value=6.3e+02 Score=30.64 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcccccchHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 002692 321 AVQMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSH 400 (892)
Q Consensus 321 v~~lv~~Y~~~l~l~~~l~~tE~qp~Del~LLAa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~ 400 (892)
..+.++.|-....+......+-..+ ..+....++.+-| .+.+.+|+-+|+.++..+|.+-+.+.-|..+-..
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~----~plV~Ka~l~~qw----k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNA----APLVHKALLVLQW----KEDINQAENLLRKAIELDPKCEQAYETLAQFELQ 549 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccc----hhhhhhhHhhhch----hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 4456778877765433222222211 1233334443333 2789999999999999999999999999999999
Q ss_pred cCChHHHHHHHH
Q 002692 401 LGALPLAYEWYK 412 (892)
Q Consensus 401 LGa~s~A~~~y~ 412 (892)
-|-...|.++|+
T Consensus 550 ~~~i~eAielFE 561 (606)
T KOG0547|consen 550 RGKIDEAIELFE 561 (606)
T ss_pred HhhHHHHHHHHH
Confidence 999999999998
No 129
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=45.61 E-value=39 Score=40.05 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=51.3
Q ss_pred CchHHHHHHHHHHHHcCChhHHHHHHhhhcccc-hhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002692 75 HEPEALIVYISILEQQSKYGDALEILSGTLGSL-LVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSP 143 (892)
Q Consensus 75 et~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~-l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~np 143 (892)
..+.-++|+..|.+..|.|+.++..|++.-|.. -.....+..| +-+-++|+|.+|+.....+|..+.
T Consensus 321 ~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~--r~~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 321 QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRL--RSLHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred CCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHH--HhhhchhhHHHHHHHHHHHhcccc
Confidence 467789999999999999999999998753321 1223334444 677899999999999999998543
No 130
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=44.83 E-value=5.9e+02 Score=30.91 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002692 77 PEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWE 147 (892)
Q Consensus 77 ~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~ 147 (892)
+.-...+..+...+|++++|...++.-+. +.....-..+.+.++...|+.++|.+.++..+..+|.+=.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 33334445666678999999999987433 2222334567788999999999999999999999887543
No 131
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=44.82 E-value=89 Score=33.15 Aligned_cols=95 Identities=21% Similarity=0.328 Sum_probs=62.9
Q ss_pred HHHHhhcCC---chhhHHHHHHHHH------------HHHhhcC-CCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccc
Q 002692 44 IQLQVLCGN---GGEKLLLLAEGLL------------KKHVASH-SLHEPEALIVYISILEQQSKYGDALEILSGTLGSL 107 (892)
Q Consensus 44 ~~LQa~~~~---~~~kLL~LA~kml------------eK~i~~~-~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~ 107 (892)
.|-|+.++. +..+||.||..++ ++..+.+ .+.++..-++|.++|..+|++++|-..++--+. -
T Consensus 111 hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~-~ 189 (251)
T COG4700 111 HYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS-Y 189 (251)
T ss_pred HHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH-h
Confidence 345555543 3456666665443 3333323 367888999999999999999988776663221 2
Q ss_pred hhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002692 108 LVIEVDKLRMQGRLLARQGDYTAAAQIYKKILE 140 (892)
Q Consensus 108 l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe 140 (892)
.+....+.+. ++.|.+.|+..++++-+..+..
T Consensus 190 ypg~~ar~~Y-~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 190 YPGPQARIYY-AEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred CCCHHHHHHH-HHHHHHhcchhHHHHHHHHHHH
Confidence 3444444433 5888999999999988887765
No 132
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=44.40 E-value=42 Score=26.04 Aligned_cols=31 Identities=23% Similarity=0.063 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 002692 367 YGYFMEAIMVLEFGLTVRRHAWQYKVLLVHL 397 (892)
Q Consensus 367 ~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirL 397 (892)
.+..-+|+.+++.+++..|.|......|.++
T Consensus 14 ~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 14 LGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred cCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 3466789999999999999999988887753
No 133
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=42.98 E-value=1.9e+02 Score=29.04 Aligned_cols=78 Identities=24% Similarity=0.435 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHHHcCChhHHHHHHhhhcccchhc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHH
Q 002692 76 EPEALIVYISILEQQSKYGDALEILSGTLGSLLVI----EVDKLRMQGRLLARQGDYTAAAQIYKKILELSPD----DWE 147 (892)
Q Consensus 76 t~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~----~~e~L~Lka~lL~klg~weea~~~~k~LLe~npD----DW~ 147 (892)
+++++.==..=.-..|+|.+|.+.++. |-...+- +...|.+ +..+-+.+++++|...+...++.+|. ||.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~-L~~ryP~g~ya~qAqL~l-~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEA-LDTRYPFGEYAEQAQLDL-AYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHH-HHhcCCCCcccHHHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 333433333445567999999988874 2112221 1112222 46778999999999999999999887 888
Q ss_pred HHHHHHHh
Q 002692 148 CFLHYLGC 155 (892)
Q Consensus 148 ~w~~yLda 155 (892)
.|..-|..
T Consensus 87 ~Y~~gL~~ 94 (142)
T PF13512_consen 87 YYMRGLSY 94 (142)
T ss_pred HHHHHHHH
Confidence 87655543
No 134
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=42.74 E-value=1.3e+02 Score=31.37 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHHHcCChhHHHHHHhhhccc--chhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002692 76 EPEALIVYISILEQQSKYGDALEILSGTLGS--LLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPD 144 (892)
Q Consensus 76 t~EEl~LY~~ILe~qgK~~EALelL~~~Lg~--~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npD 144 (892)
++++++=-..-+-.+|+|++|++.++.-... .-+...+-+...+..+-+.|++++|...++..+...|+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3445555556667789999999998852111 11223334445567888999999999999999998776
No 135
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=40.25 E-value=2.5e+02 Score=31.50 Aligned_cols=68 Identities=26% Similarity=0.334 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHHHHcC---ChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002692 75 HEPEALIVYISILEQQS---KYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSP 143 (892)
Q Consensus 75 et~EEl~LY~~ILe~qg---K~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~np 143 (892)
++++-+..|..+|-.+. .-.++-+++..-+.. =..+..-+.+-+.-+...|++.+|...++.+|...|
T Consensus 188 ~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 188 DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 45555555666655552 223344444432211 011223344445555666777777777777777544
No 136
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=40.23 E-value=2.3e+02 Score=31.25 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=46.9
Q ss_pred HHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHH-HH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 002692 82 VYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLL-AR-QGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 159 (892)
Q Consensus 82 LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL-~k-lg~weea~~~~k~LLe~npDDW~~w~~yLda~~el 159 (892)
-|+..+.+.+..++|-++....+... .-....++....+ .. .++.+.|..+++..|..-|+|-++|..|++-+.++
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 45566666666666766665443211 0011233433344 33 46666699999999998899999999999888765
Q ss_pred C
Q 002692 160 D 160 (892)
Q Consensus 160 ~ 160 (892)
+
T Consensus 84 ~ 84 (280)
T PF05843_consen 84 N 84 (280)
T ss_dssp T
T ss_pred C
Confidence 3
No 137
>KOG3679 consensus Predicted coiled-coil protein [General function prediction only]
Probab=39.84 E-value=94 Score=35.60 Aligned_cols=130 Identities=22% Similarity=0.319 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHcCCC--cccHHh---HHHHHhhcCHHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHHHHhcCcc
Q 002692 236 DELMEAVLEYFLSFGHL--ACFTSD---VEDFLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTY 310 (892)
Q Consensus 236 ~~l~~~l~~Yf~kFg~K--pcCF~D---Lk~Yl~~L~~ee~~~fl~~l~~~~~~~s~~~~k~L~~~In~~Kl~rllg~~~ 310 (892)
.++.-.+.+||++.|-| +|.|+- |..|++.++. .....||-.|+..++....
T Consensus 529 nelilrlqeyfekqgvkdfacsfsgsiplqeyfelidh-----------------------hfelringekleellsera 585 (802)
T KOG3679|consen 529 NELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELIDH-----------------------HFELRINGEKLEELLSERA 585 (802)
T ss_pred HHHHHHHHHHHHHcCcceeeeeccCCccHHHHHHHhhh-----------------------eeEEEechHHHHHHHHHHH
Confidence 45677789999999987 777764 4445443331 0111244445544442110
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCCCCCCCCcccccchHHHHH---HHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCc
Q 002692 311 KLLVDELERSAVQMSEMYCKSLPLSKDLDPQESIHGEELLSMA---SNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHA 387 (892)
Q Consensus 311 ~ls~~~~~~~v~~lv~~Y~~~l~l~~~l~~tE~qp~Del~LLA---a~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N 387 (892)
...+++-++++..|. ++.|.-.|+-|.++==. +-+|.+. ...+.+++++...-| +..
T Consensus 586 ----vqfraiqrrllarfk-------dktpaplqhldtlldgtykqvialada--veenqgnlfqsftrl-------ksa 645 (802)
T KOG3679|consen 586 ----VQFRAIQRRLLARFK-------DKTPAPLQHLDTLLDGTYKQVIALADA--VEENQGNLFQSFTRL-------KSA 645 (802)
T ss_pred ----HHHHHHHHHHHHHhc-------cCCCchHHHHHHHhcchHHHHHHHHhH--HhhccccHHHHHHhh-------hcc
Confidence 112233333444442 23344444444422111 1112222 123455666665443 344
Q ss_pred hHHHHHHHHHHHHcCChHHHH
Q 002692 388 WQYKVLLVHLYSHLGALPLAY 408 (892)
Q Consensus 388 ~~lkLlLirLY~~LGa~s~A~ 408 (892)
.|+-++||.++-.|.+-.-|.
T Consensus 646 thlvillialwqklsadqvai 666 (802)
T KOG3679|consen 646 THLVILLIALWQKLSADQVAI 666 (802)
T ss_pred hhHHHHHHHHHHHccchHHHH
Confidence 678889998888887766443
No 138
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=39.40 E-value=61 Score=20.89 Aligned_cols=29 Identities=38% Similarity=0.674 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002692 117 MQGRLLARQGDYTAAAQIYKKILELSPDD 145 (892)
Q Consensus 117 Lka~lL~klg~weea~~~~k~LLe~npDD 145 (892)
..+.++...|+++++...++..+..+|++
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 45677788899999999999988877653
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=37.16 E-value=1.7e+02 Score=31.66 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHHcCChhHHHHHHhhhcccchh---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002692 75 HEPEALIVYISILEQQSKYGDALEILSGTLGSLLV---IEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDD 145 (892)
Q Consensus 75 et~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~---~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDD 145 (892)
.++++.+--..-+-..|+|++|++.++.-+. ..+ ....-....+..+-+.+++++|...++..+...|++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~-~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDN-RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 3566666666667778999999998875321 122 112223345677889999999999999999998873
No 140
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=36.22 E-value=9.6e+02 Score=30.01 Aligned_cols=87 Identities=24% Similarity=0.274 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhh----hcccchhcHHHHHHHHHHHHHHcCCHHHH
Q 002692 56 KLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSG----TLGSLLVIEVDKLRMQGRLLARQGDYTAA 131 (892)
Q Consensus 56 kLL~LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~----~Lg~~l~~~~e~L~Lka~lL~klg~weea 131 (892)
+=|.+++.+++|.. +..|.+-+---.|...|+.+||.+.+.- ++++.++ |-.-|-++....+|.+|
T Consensus 25 kgLK~~~~iL~k~~-----eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC-----wHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 25 KGLKLIKQILKKFP-----EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC-----WHVLGLLQRSDKKYDEA 94 (700)
T ss_pred hHHHHHHHHHHhCC-----ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh-----HHHHHHHHhhhhhHHHH
Confidence 44788888888642 5677888888999999999999999863 3443332 22233355667899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHH
Q 002692 132 AQIYKKILELSPDDWECFLHY 152 (892)
Q Consensus 132 ~~~~k~LLe~npDDW~~w~~y 152 (892)
..+|+..|..+|||-..|..+
T Consensus 95 iKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 95 IKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHH
Confidence 999999999999999999743
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.58 E-value=2.5e+02 Score=31.31 Aligned_cols=100 Identities=22% Similarity=0.196 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHH----HHHHHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHH
Q 002692 58 LLLAEGLLKKHVASHSLHEPEALI----VYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQ 133 (892)
Q Consensus 58 L~LA~kmleK~i~~~~iet~EEl~----LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~ 133 (892)
..+|++.+.++. .+.+...+- =|+.+--..+|+++|.=+-+ ++..+.+.-+..+.=++-+-...|+|++|..
T Consensus 153 ~d~A~~~lk~mq---~ided~tLtQLA~awv~la~ggek~qdAfyife-E~s~k~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 153 FDLAEKELKKMQ---QIDEDATLTQLAQAWVKLATGGEKIQDAFYIFE-ELSEKTPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHH---ccchHHHHHHHHHHHHHHhccchhhhhHHHHHH-HHhcccCCChHHHccHHHHHHHhcCHHHHHH
Confidence 467777777764 233332221 25566666677888765544 2222232222222224456677899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhhcCCC
Q 002692 134 IYKKILELSPDDWECFLHYLGCLLEDDS 161 (892)
Q Consensus 134 ~~k~LLe~npDDW~~w~~yLda~~el~~ 161 (892)
+.++.|.+.+.|-++....+-++..+++
T Consensus 229 lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 229 LLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998877653
No 142
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.28 E-value=1e+03 Score=29.38 Aligned_cols=268 Identities=18% Similarity=0.155 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccCCCC---CCCCCCCcccccccCcchh
Q 002692 112 VDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDDSSWCNAASS---DPIHPQKSVDCKFSHLTDE 188 (892)
Q Consensus 112 ~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el~~~~~~~~~~---~~~~p~~~~~~~~~~l~~~ 188 (892)
++.+.-+++.+-..+++.+.++++..+|+..|-+-.++-..|.|+.++++.-.----+ -...|.+.+.+-.-++==
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY- 322 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY- 322 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH-
Confidence 3445556777778899999999999999999999999999999988765421000000 011111111110000000
Q ss_pred hhhhcHHHHHHHHHHHhhccCCCCCchhHhHhchHHHHHhhhCCCCchHHHHHHHHHHHHc-----CCCcccHHhHHHHH
Q 002692 189 VFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERRKLLYGKNNNDELMEAVLEYFLSF-----GHLACFTSDVEDFL 263 (892)
Q Consensus 189 ~~~~~i~ea~~fi~~l~a~~~~~~~Rgp~LA~LEL~~Rl~~~G~~~~~~l~~~l~~Yf~kF-----g~KpcCF~DLk~Yl 263 (892)
......++|+.++.+-. .-.+.+.++ .|-+..- ...+.+-..++-.|+.-. .++|..|--+..=.
T Consensus 323 l~i~k~seARry~SKat-~lD~~fgpa----Wl~fghs-----fa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKAT-TLDPTFGPA----WLAFGHS-----FAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR 392 (611)
T ss_pred HHhcCcHHHHHHHHHHh-hcCccccHH----HHHHhHH-----hhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 00124556777765422 112223222 2222110 111234456777777643 25666665554321
Q ss_pred hhcCHHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHHHHhcCccCCChHHHHHHHHHHHHHHHhhCCCCCCCCCCcc
Q 002692 264 LVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLVDELERSAVQMSEMYCKSLPLSKDLDPQES 343 (892)
Q Consensus 264 ~~L~~ee~~~fl~~l~~~~~~~s~~~~k~L~~~In~~Kl~rllg~~~~ls~~~~~~~v~~lv~~Y~~~l~l~~~l~~tE~ 343 (892)
.=+.+-.+.|...-.. ..+..|. +.+.+ |.-. .. -....+....|++.+..-++..+ |.
T Consensus 393 -t~n~kLAe~Ff~~A~a---i~P~Dpl--v~~El---------gvva-y~----~~~y~~A~~~f~~~l~~ik~~~~-e~ 451 (611)
T KOG1173|consen 393 -TNNLKLAEKFFKQALA---IAPSDPL--VLHEL---------GVVA-YT----YEEYPEALKYFQKALEVIKSVLN-EK 451 (611)
T ss_pred -hccHHHHHHHHHHHHh---cCCCcch--hhhhh---------hhee-eh----HhhhHHHHHHHHHHHHHhhhccc-cc
Confidence 1111112222222111 1111111 00000 0000 00 01112223334444311111111 00
Q ss_pred cccchHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHH-hCCchh
Q 002692 344 IHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYK-ALDVKN 418 (892)
Q Consensus 344 qp~Del~LLAa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~-~LdIK~ 418 (892)
..........+|+.- ..+...+||...+.+|..+|.++...--+.-+|.++|.++.|.++|. +|-+|.
T Consensus 452 ~~w~p~~~NLGH~~R-------kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYR-------KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred cchhHHHHhHHHHHH-------HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 011222233333332 24467889999999999999999999999999999999999999986 455554
No 143
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=33.03 E-value=71 Score=35.10 Aligned_cols=46 Identities=28% Similarity=0.343 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 002692 367 YGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYK 412 (892)
Q Consensus 367 ~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~ 412 (892)
.+.+-+|+..+..+++.+|+|+.+...+.-+|..+|-+..|..-|.
T Consensus 113 ~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred hcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHH
Confidence 3477889999999999999999999999999999999999999886
No 144
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.13 E-value=58 Score=37.36 Aligned_cols=46 Identities=33% Similarity=0.476 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHcCChHHHHHHHHhC
Q 002692 369 YFMEAIMVLEFGLTVRRHA-WQYKVLLVHLYSHLGALPLAYEWYKAL 414 (892)
Q Consensus 369 ~Ll~Ai~LLE~aL~kSP~N-~~lkLlLirLY~~LGa~s~A~~~y~~L 414 (892)
..--|+.+||+.+...... -++.+|++..|-+||....|.+.|..+
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~ 83 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFL 83 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3456899999988665443 489999999999999999999999654
No 145
>PRK11906 transcriptional regulator; Provisional
Probab=31.52 E-value=5.6e+02 Score=30.69 Aligned_cols=110 Identities=12% Similarity=-0.065 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHhhcCC-chhhHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHcCChhHHHHHHhhhcccchhcHHHH
Q 002692 36 FLLWAVCSIQLQVLCGN-GGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDK 114 (892)
Q Consensus 36 Y~fWaVmS~~LQa~~~~-~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~~~~e~ 114 (892)
=|.|..++-+..+..+- +.+.-..-|.+...++++-++ .+++.+.+...++-..++++.+..+++..+. .-+....-
T Consensus 297 a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~-L~Pn~A~~ 374 (458)
T PRK11906 297 CYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKI-HSTDIASL 374 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhh-cCCccHHH
Confidence 46676666555444332 222334556677777776555 5777888888999999999999999986532 22344556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002692 115 LRMQGRLLARQGDYTAAAQIYKKILELSPDDWE 147 (892)
Q Consensus 115 L~Lka~lL~klg~weea~~~~k~LLe~npDDW~ 147 (892)
+++.+-++.-.|+.++|.+...+.++.+|-.-.
T Consensus 375 ~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 375 YYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 778888888899999999999999999887543
No 146
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.22 E-value=2e+02 Score=34.08 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=46.3
Q ss_pred hHHHHHHhhhcccchhcHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 002692 94 GDALEILSGTLGSLLVIEVDKLR-MQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 159 (892)
Q Consensus 94 ~EALelL~~~Lg~~l~~~~e~L~-Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el 159 (892)
+.++.+++.. .++.....+|. |-+.++.+.|+|+.|++.|+.+=.+-|.|.++.+-+++-+..+
T Consensus 643 ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 643 EKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 4455555431 12222233554 4558899999999999999999999999999999888876544
No 147
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.05 E-value=1.6e+02 Score=31.71 Aligned_cols=70 Identities=29% Similarity=0.353 Sum_probs=47.3
Q ss_pred chHHHHHHH---HHHHHcCChhHHHHHHhhh--cccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002692 76 EPEALIVYI---SILEQQSKYGDALEILSGT--LGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWEC 148 (892)
Q Consensus 76 t~EEl~LY~---~ILe~qgK~~EALelL~~~--Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~ 148 (892)
+.+.-+||. --+-.++|++.|++--... |+..+ ...+.-||+++.+..+++++.+-|+++++..|-+-..
T Consensus 130 ~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty---~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 130 TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY---EKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 344445554 3455678888887765542 22222 2233446899999999999999999999998876544
No 148
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=30.64 E-value=1.1e+03 Score=28.83 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHH
Q 002692 366 NYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWY 411 (892)
Q Consensus 366 ~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y 411 (892)
...+|-+|.-+|+-.+..+|.+.+..++.-.+|.+-|-+-+|+..-
T Consensus 469 t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL 514 (517)
T PF12569_consen 469 TEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQAL 514 (517)
T ss_pred CCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHH
Confidence 3568999999999999999999999999999999999998887754
No 149
>PRK10941 hypothetical protein; Provisional
Probab=30.50 E-value=1.2e+02 Score=33.48 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=27.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002692 120 RLLARQGDYTAAAQIYKKILELSPDDWECFL 150 (892)
Q Consensus 120 ~lL~klg~weea~~~~k~LLe~npDDW~~w~ 150 (892)
..+.+.++|+.|..++..+|...|||+.-|.
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~R 219 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIR 219 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4667889999999999999999999998885
No 150
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=30.15 E-value=3.2e+02 Score=30.95 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=58.2
Q ss_pred HHHHhhhcHHHHHHHHHHhHhhhCCC-ccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 002692 9 NCYVREYSFVKQQQTAIKMYKHAGEE-RFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISIL 87 (892)
Q Consensus 9 ~ayvR~~d~kkqQQ~AmkL~K~f~~~-rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~~IL 87 (892)
..+++.|+.+ .|-+|.|.|+=+ +-+||-.+-.+..... =.-|-.+|.. | ..|| -..-++.+|
T Consensus 185 ~~li~~~~~k----~A~kl~k~Fkv~dkrfw~lki~aLa~~~~---w~eL~~fa~s---k---KsPI----GyepFv~~~ 247 (319)
T PF04840_consen 185 RKLIEMGQEK----QAEKLKKEFKVPDKRFWWLKIKALAENKD---WDELEKFAKS---K---KSPI----GYEPFVEAC 247 (319)
T ss_pred HHHHHCCCHH----HHHHHHHHcCCcHHHHHHHHHHHHHhcCC---HHHHHHHHhC---C---CCCC----ChHHHHHHH
Confidence 3455666654 566677777633 3334554444433221 0122222210 1 1233 344567777
Q ss_pred HHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002692 88 EQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKK 137 (892)
Q Consensus 88 e~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~ 137 (892)
-..|...||..++.. +.. . -|.+++.+.|+|.+|.+.+.+
T Consensus 248 ~~~~~~~eA~~yI~k-----~~~-~----~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK-----IPD-E----ERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHh-----CCh-H----HHHHHHHHCCCHHHHHHHHHH
Confidence 788999999999874 322 2 245788999999999887654
No 151
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=29.58 E-value=1.4e+02 Score=28.96 Aligned_cols=77 Identities=26% Similarity=0.338 Sum_probs=54.8
Q ss_pred HHHHHHHhhCCCCCCCCCCcccccchHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCC---chHHHHHHHHHHH
Q 002692 323 QMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRH---AWQYKVLLVHLYS 399 (892)
Q Consensus 323 ~lv~~Y~~~l~l~~~l~~tE~qp~Del~LLAa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~---N~~lkLlLirLY~ 399 (892)
+.+..|++.+..+ ++..+ ...+++++...-++.+..-+|+.+|+.++..-|. +..++.+++-...
T Consensus 19 ~Ai~~Y~~Al~~g--L~~~~----------~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 19 EAIPLYRRALAAG--LSGAD----------RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHHHHHHcC--CCchH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4577888876532 22211 1123333333334566888999999999998787 8899999999999
Q ss_pred HcCChHHHHHHH
Q 002692 400 HLGALPLAYEWY 411 (892)
Q Consensus 400 ~LGa~s~A~~~y 411 (892)
.+|-...|.+++
T Consensus 87 ~~gr~~eAl~~~ 98 (120)
T PF12688_consen 87 NLGRPKEALEWL 98 (120)
T ss_pred HCCCHHHHHHHH
Confidence 999999998876
No 152
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.22 E-value=2.3e+02 Score=31.89 Aligned_cols=49 Identities=10% Similarity=-0.048 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHhCCch
Q 002692 369 YFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVK 417 (892)
Q Consensus 369 ~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~LdIK 417 (892)
..-+-+.|||.||+++|++..+.+..++++..+.-.+...+.|+.+=.+
T Consensus 46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 46 LAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4457799999999999999999999999999999888777777655433
No 153
>PF13041 PPR_2: PPR repeat family
Probab=28.52 E-value=1.5e+02 Score=23.39 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=30.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHhh
Q 002692 120 RLLARQGDYTAAAQIYKKILELS-PDDWECFLHYLGCL 156 (892)
Q Consensus 120 ~lL~klg~weea~~~~k~LLe~n-pDDW~~w~~yLda~ 156 (892)
..+.+.|++++|.++++++.+.+ +-|..+|..+|++.
T Consensus 11 ~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 11 SGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 56788999999999999999975 44777788887764
No 154
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=28.24 E-value=48 Score=24.67 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhhc
Q 002692 134 IYKKILELSPDDWECFLHYLGCLLE 158 (892)
Q Consensus 134 ~~k~LLe~npDDW~~w~~yLda~~e 158 (892)
.|++.|+.+|+|+..|..+=.....
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~ 25 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN 25 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3788999999999999887665544
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=27.62 E-value=8.3e+02 Score=26.65 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=49.4
Q ss_pred CCCCchHHHH-HHHHHHHHc-CChhHHHHHHhhhccc--chh--cHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC--
Q 002692 72 HSLHEPEALI-VYISILEQQ-SKYGDALEILSGTLGS--LLV--IEVDKLRM-QGRLLARQGDYTAAAQIYKKILELS-- 142 (892)
Q Consensus 72 ~~iet~EEl~-LY~~ILe~q-gK~~EALelL~~~Lg~--~l~--~~~e~L~L-ka~lL~klg~weea~~~~k~LLe~n-- 142 (892)
+.+.....+. -...+++.+ |++++|++....-..- .-. ........ -+.++.++|+|++|.+.+.++....
T Consensus 108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 4333333333 334888888 8999999888753211 001 11112222 3478899999999999999998853
Q ss_pred --CCCHHHHHHHHHhh
Q 002692 143 --PDDWECFLHYLGCL 156 (892)
Q Consensus 143 --pDDW~~w~~yLda~ 156 (892)
--.|.+=..|+.++
T Consensus 188 ~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCTTGHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHH
Confidence 23676655666664
No 156
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=27.28 E-value=7.1e+02 Score=25.76 Aligned_cols=27 Identities=30% Similarity=0.536 Sum_probs=23.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002692 118 QGRLLARQGDYTAAAQIYKKILELSPD 144 (892)
Q Consensus 118 ka~lL~klg~weea~~~~k~LLe~npD 144 (892)
-++++.+.|.|..|...++.+++.=||
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 368888999999999999999998776
No 157
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.61 E-value=5.3e+02 Score=30.27 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=53.8
Q ss_pred HHHHHcCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 002692 85 SILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLL 157 (892)
Q Consensus 85 ~ILe~qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~ 157 (892)
..+.+++.|.+|++.-+.-|.- =+...+-|+-+++.+...|+++.|...++++++.+|+|=+.=..++.+..
T Consensus 265 ~c~lKl~~~~~Ai~~c~kvLe~-~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 265 ACYLKLKEYKEAIESCNKVLEL-DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHhhhhHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455678888888776654321 11224557788999999999999999999999999999777666666554
No 158
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=26.22 E-value=2.3e+02 Score=31.72 Aligned_cols=47 Identities=19% Similarity=0.052 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHHhCC
Q 002692 369 YFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALD 415 (892)
Q Consensus 369 ~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~~Ld 415 (892)
.+-.++..|+..+..+|++=.....+++.|..-|..+.|..+|+.|.
T Consensus 168 ~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 168 RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44456677889999999999999999999999999999999998764
No 159
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=25.35 E-value=3.9e+02 Score=25.72 Aligned_cols=41 Identities=27% Similarity=0.448 Sum_probs=34.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcCC
Q 002692 120 RLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDD 160 (892)
Q Consensus 120 ~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el~ 160 (892)
..+...|+++++...++.++..+|-|=..|..++.+....+
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g 110 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQG 110 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCc
Confidence 44567899999999999999999999999999999987654
No 160
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=25.19 E-value=1e+03 Score=32.60 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=79.1
Q ss_pred HhHhhhCCCccHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHc---CChhHHHHHHhh
Q 002692 26 KMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQ---SKYGDALEILSG 102 (892)
Q Consensus 26 kL~K~f~~~rY~fWaVmS~~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~~ILe~q---gK~~EALelL~~ 102 (892)
+|-+..|+....|-.-|+.++|... -++--.+|+|-+... +.-+..|-+-+++..|... |.-++..++.+.
T Consensus 1449 rlvrssPNSSi~WI~YMaf~LelsE---iekAR~iaerAL~tI---N~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1449 RLVRSSPNSSILWIRYMAFHLELSE---IEKARKIAERALKTI---NFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHhcCCCcchHHHHHHHHHhhhhh---hHHHHHHHHHHhhhC---CcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 4556677777777788888888753 233334455444332 2225556666766666655 433444555553
Q ss_pred hcccchhcHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 002692 103 TLGSLLVIEV-DKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 159 (892)
Q Consensus 103 ~Lg~~l~~~~-e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el 159 (892)
. + .++.+- -.+.| ...|.+.+++++|-++++.++.+--.--..|..|.+.++.-
T Consensus 1523 A-c-qycd~~~V~~~L-~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1523 A-C-QYCDAYTVHLKL-LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred H-H-HhcchHHHHHHH-HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 1 1 122211 12223 26789999999999999999998667889999999998864
No 161
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=24.87 E-value=4.1e+02 Score=29.26 Aligned_cols=96 Identities=17% Similarity=0.231 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhcCCC---CchHHHHHHHHHHHHcCChhHHHHHHhhhcccchh------------------------
Q 002692 57 LLLLAEGLLKKHVASHSL---HEPEALIVYISILEQQSKYGDALEILSGTLGSLLV------------------------ 109 (892)
Q Consensus 57 LL~LA~kmleK~i~~~~i---et~EEl~LY~~ILe~qgK~~EALelL~~~Lg~~l~------------------------ 109 (892)
.+.+|.+.+.++...... ..+.-.+-|+++|..+|+..+|+..|..-+...+.
T Consensus 161 ~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (352)
T PF02259_consen 161 NFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISS 240 (352)
T ss_pred CcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccc
Confidence 367888888887543211 15667777999999999999999988643320000
Q ss_pred --cHHHHHHHHH-------HHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002692 110 --IEVDKLRMQG-------RLLARQ------GDYTAAAQIYKKILELSPDDWECFLHY 152 (892)
Q Consensus 110 --~~~e~L~Lka-------~lL~kl------g~weea~~~~k~LLe~npDDW~~w~~y 152 (892)
...+...+++ +..... ++.+++...+++....+|.....|..+
T Consensus 241 ~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 241 TNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 0111223333 333444 666777888888888877655555443
No 162
>PRK11906 transcriptional regulator; Provisional
Probab=24.39 E-value=3.4e+02 Score=32.46 Aligned_cols=72 Identities=7% Similarity=-0.012 Sum_probs=54.8
Q ss_pred CCcccccchHHHHHHHHHHHHh--hhcCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 002692 340 PQESIHGEELLSMASNVLVQLF--WRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYK 412 (892)
Q Consensus 340 ~tE~qp~Del~LLAa~~Ll~l~--~~~~~~~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y~ 412 (892)
+.|...+.-++.+|-.-....+ +.+ ......+|+.+.+.++..+|.|++...++..++.+.|-...|...|+
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~ 362 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFE 362 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHH
Confidence 3444455556666544333323 223 57788999999999999999999999999999999999988888775
No 163
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=24.11 E-value=8.2e+02 Score=30.07 Aligned_cols=50 Identities=18% Similarity=0.050 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHH-HHHhCCchhHH
Q 002692 371 MEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYE-WYKALDVKNIL 420 (892)
Q Consensus 371 l~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~-~y~~LdIK~IQ 420 (892)
.|-+.+||..+.+.|-.....-.|-+.|..+-.-.+-.. .|-.|-||+=-
T Consensus 500 ~Ql~lfL~~l~q~~~lp~~~~~aL~~~Y~l~~skNAEvr~rw~~L~vksk~ 550 (613)
T KOG1047|consen 500 DQLVLFLDKLLQSKPLPPGTVKALQDTYSLLQSKNAEVRFRWLQLIVKSKW 550 (613)
T ss_pred HhHHHHHHHHHhcCCCChHHHHHHHHHhhhhhccchHHHHHHHHHHHHhhh
Confidence 455778899999998777777778888885554443333 35566666653
No 164
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.58 E-value=7.6e+02 Score=26.31 Aligned_cols=124 Identities=19% Similarity=0.221 Sum_probs=72.2
Q ss_pred ccHHhHHHHHhhcCHHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHHHHhcCccCCChHHHHHHHHHHHHHHHhhCC
Q 002692 254 CFTSDVEDFLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLVDELERSAVQMSEMYCKSLP 333 (892)
Q Consensus 254 cCF~DLk~Yl~~L~~ee~~~fl~~l~~~~~~~s~~~~k~L~~~In~~Kl~rllg~~~~ls~~~~~~~v~~lv~~Y~~~l~ 333 (892)
|-|.=.....+.+++.+++.+.+.+...-....-.....+..-|..+||.-++......+
T Consensus 54 CgyA~~~~~F~~l~~~~~~~i~~~i~~~~~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~-------------------- 113 (214)
T PF09986_consen 54 CGYAAFEEDFEKLSPEQKEKIKENISSRWKPRDFSGERTLEEAIESYKLALLCAQIKKEK-------------------- 113 (214)
T ss_pred CCCcccccccccCCHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHhCCC--------------------
Confidence 336666665667888888777777765432211111234444455555543332111000
Q ss_pred CCCCCCCCcccccchHHHHHHHHHHHHhhh-------cCChHHHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHH
Q 002692 334 LSKDLDPQESIHGEELLSMASNVLVQLFWR-------TSNYGYFMEAIMVLEFGLTVRRH------AWQYKVLLVHLYSH 400 (892)
Q Consensus 334 l~~~l~~tE~qp~Del~LLAa~~Ll~l~~~-------~~~~~~Ll~Ai~LLE~aL~kSP~------N~~lkLlLirLY~~ 400 (892)
+ ...|.+.+.++|- ......+-+|+...+.++.+... ...+-.++.-|+.+
T Consensus 114 ------~----------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr 177 (214)
T PF09986_consen 114 ------P----------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR 177 (214)
T ss_pred ------H----------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH
Confidence 0 1233445555542 12345677888888888877543 24567778889999
Q ss_pred cCChHHHHHHHHh
Q 002692 401 LGALPLAYEWYKA 413 (892)
Q Consensus 401 LGa~s~A~~~y~~ 413 (892)
+|....|..+|..
T Consensus 178 lg~~~eA~~~fs~ 190 (214)
T PF09986_consen 178 LGNYDEAKRWFSR 190 (214)
T ss_pred hCCHHHHHHHHHH
Confidence 9999999999864
No 165
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=22.97 E-value=5.9e+02 Score=33.38 Aligned_cols=51 Identities=27% Similarity=0.245 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCC-hHHHHHHHH---hCCchhH
Q 002692 369 YFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGA-LPLAYEWYK---ALDVKNI 419 (892)
Q Consensus 369 ~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa-~s~A~~~y~---~LdIK~I 419 (892)
..-+|+...+.+|+.+|.||-..+.|-.-|.-+|. .+.|.+||- +||=+|+
T Consensus 17 ~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnl 71 (1238)
T KOG1127|consen 17 EYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNL 71 (1238)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhh
Confidence 44778999999999999999999999999999999 999999987 7788887
No 166
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=22.63 E-value=3e+02 Score=32.86 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhcCCCchHH---HHHHHHHHHHcCChHHHHHHHH
Q 002692 368 GYFMEAIMVLEFGLTVRRHAWQY---KVLLVHLYSHLGALPLAYEWYK 412 (892)
Q Consensus 368 ~~Ll~Ai~LLE~aL~kSP~N~~l---kLlLirLY~~LGa~s~A~~~y~ 412 (892)
+..-+|+..++.++..+|++.+. ..-+.-.|..+|..+.|.+.|+
T Consensus 89 GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lr 136 (453)
T PLN03098 89 GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLR 136 (453)
T ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46688999999999999999854 8889999999999999999987
No 167
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=22.63 E-value=98 Score=23.34 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=25.6
Q ss_pred chhhhhHHHHHHHHHHHhCcchhhhhHHHh
Q 002692 620 PKVSSELKYLLDRYAKMLGFSLRDAVEVVS 649 (892)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (892)
+.+..|+...|+++|+-.|.|.++.|...+
T Consensus 4 i~l~~~~~~~l~~~a~~~g~s~s~~ir~ai 33 (39)
T PF01402_consen 4 IRLPDELYERLDELAKELGRSRSELIREAI 33 (39)
T ss_dssp EEEEHHHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 456778999999999999999999887665
No 168
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=22.20 E-value=1.1e+03 Score=28.21 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHhHhhhCCCccHHHHHHHHHHHhhcC------Cc--hhhHHHHHHHHHHHHhhcCCCCchHHHHHHH-HHHHHcCC
Q 002692 22 QTAIKMYKHAGEERFLLWAVCSIQLQVLCG------NG--GEKLLLLAEGLLKKHVASHSLHEPEALIVYI-SILEQQSK 92 (892)
Q Consensus 22 Q~AmkL~K~f~~~rY~fWaVmS~~LQa~~~------~~--~~kLL~LA~kmleK~i~~~~iet~EEl~LY~-~ILe~qgK 92 (892)
+.++++-...-+..-..-.++++.|.+... +. ...-+..|++++... ...+++..=+.++- +++..+|+
T Consensus 205 ~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~--~~~yP~s~lfl~~~gR~~~~~g~ 282 (468)
T PF10300_consen 205 ELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEM--LKRYPNSALFLFFEGRLERLKGN 282 (468)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHH--HHhCCCcHHHHHHHHHHHHHhcC
Q ss_pred hhHHHHHHhhhcccchhcHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 002692 93 YGDALEILSGTLGSLLVIEVDK---LRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLL 157 (892)
Q Consensus 93 ~~EALelL~~~Lg~~l~~~~e~---L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~ 157 (892)
.++|++.++..+........-. ..-.+-.+.-..+|++|.+.+..|++.+..-=.+|.....++.
T Consensus 283 ~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 283 LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
No 169
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=22.09 E-value=3.3e+02 Score=34.20 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=54.4
Q ss_pred cCChhHHHHHHhhhcccchhcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 002692 90 QSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 159 (892)
Q Consensus 90 qgK~~EALelL~~~Lg~~l~~~~e~L~Lka~lL~klg~weea~~~~k~LLe~npDDW~~w~~yLda~~el 159 (892)
+++|+++.+.+++.+. .-++-.+-|+-.+-+..++++|+.+...+...+...||+...|..+-.+-..+
T Consensus 498 ~~~fs~~~~hle~sl~-~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLE-INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred chhHHHHHHHHHHHhh-cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 7889999999987543 12334456666777888999999999999999999999999999887665544
No 170
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.71 E-value=4.2e+02 Score=32.85 Aligned_cols=95 Identities=21% Similarity=0.199 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHH-HHHHHcCChhHHHHHHhhhcccchh-cHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002692 58 LLLAEGLLKKHVASHSLHEPEALIVYI-SILEQQSKYGDALEILSGTLGSLLV-IEVDKLRMQGRLLARQGDYTAAAQIY 135 (892)
Q Consensus 58 L~LA~kmleK~i~~~~iet~EEl~LY~-~ILe~qgK~~EALelL~~~Lg~~l~-~~~e~L~Lka~lL~klg~weea~~~~ 135 (892)
+.+|+=-++|+++-+| ....+..|+ .++.+.|+.++|+.+++...- ++ ..+-..+-++.++..++++++|....
T Consensus 505 ~e~Ae~~fqkA~~INP--~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINP--SNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred hhHHHHHHHhhhcCCc--cchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 4567777888776554 223455555 888899999999999986311 10 11112345678899999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHhh
Q 002692 136 KKILELSPDDWECFLHYLGCL 156 (892)
Q Consensus 136 k~LLe~npDDW~~w~~yLda~ 156 (892)
++|=+.-||+=.++-.+-..-
T Consensus 581 EeLk~~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 581 EELKELVPQESSVFALLGKIY 601 (638)
T ss_pred HHHHHhCcchHHHHHHHHHHH
Confidence 999999999888765544433
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=21.60 E-value=2.2e+02 Score=29.11 Aligned_cols=44 Identities=16% Similarity=-0.010 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHH
Q 002692 368 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWY 411 (892)
Q Consensus 368 ~~Ll~Ai~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y 411 (892)
+.+-+||..-+.+...+|+++....-+...|..+|..+.|.+.|
T Consensus 83 g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF 126 (157)
T PRK15363 83 KHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKAL 126 (157)
T ss_pred hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 35556666666666666666666666666666666666666665
No 172
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=20.72 E-value=2e+02 Score=26.37 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHcCChHHHHHHH
Q 002692 374 IMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWY 411 (892)
Q Consensus 374 i~LLE~aL~kSP~N~~lkLlLirLY~~LGa~s~A~~~y 411 (892)
+.-|+..+..+|.+++.++-++..|..-|-...|++.+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~L 45 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQL 45 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44578889999999999999999999999999999876
No 173
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=20.42 E-value=1.5e+02 Score=20.48 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 002692 389 QYKVLLVHLYSHLGALPLAYEWYK 412 (892)
Q Consensus 389 ~lkLlLirLY~~LGa~s~A~~~y~ 412 (892)
...+.|.++|...|-.+.|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999999875
Done!