Query 002692
Match_columns 892
No_of_seqs 170 out of 275
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 18:10:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002692.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1408-1411//hhsearch_pdb/002692hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 48.6 31.5 143 8-159 6-148 (388)
2 3ieg_A DNAJ homolog subfamily 1.0 1 1 42.4 35.2 313 2-413 4-331 (359)
3 2xpi_A Anaphase-promoting comp 1.0 1 1 40.8 34.7 144 3-156 86-244 (597)
4 2y4t_A DNAJ homolog subfamily 1.0 1 1 40.5 32.2 148 4-160 29-191 (450)
5 2xpi_A Anaphase-promoting comp 1.0 1 1 40.4 40.8 81 76-159 83-163 (597)
6 3fp2_A TPR repeat-containing p 1.0 1 1 40.4 22.3 84 76-160 24-107 (537)
7 2pl2_A Hypothetical conserved 1.0 1 1 38.3 18.4 79 77-156 5-83 (217)
8 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 37.7 35.8 98 60-159 17-114 (388)
9 2q7f_A YRRB protein; TPR, prot 1.0 1 1 37.4 17.8 74 84-158 30-103 (243)
10 2h6f_A Protein farnesyltransfe 1.0 1 1 36.9 14.3 81 79-160 98-180 (382)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=48.64 Aligned_cols=143 Identities=13% Similarity=0.065 Sum_probs=96.3
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99998220299999999986744098752899999999986148962018999999999885308998568999999999
Q 002692 8 FNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISIL 87 (892)
Q Consensus 8 F~ayvR~~d~kkqQQ~AmkL~K~fp~~~Y~fWaVmSi~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY~~IL 87 (892)
=..+.+.++|..+.+...++.+..|++.-. |..+..+.... +. ..-|.....+++...| ...+.......++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~l~~~~~~~-~~-----~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGV-LLLLSSIHFQC-RR-----LDRSAHFSTLAIKQNP-LLAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHT-TC-----HHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHC-CC-----HHHHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_conf 999987799999999999999849788999-99999999986-89-----9999999999976197-8669999999999
Q ss_pred HHCCCHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 981996689998841004401008999999999999849999999999999974999979999999702027
Q 002692 88 EQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 159 (892)
Q Consensus 88 e~qgK~eEALelL~~~Lg~~l~~~~~~L~Lka~lL~klg~weea~~~~k~LLe~n~DDW~~w~~yLda~~el 159 (892)
..+|++++|++.+..-+.. -+...+-+...+..+.+.|+++++.+.+++.+..+|++...|..+-......
T Consensus 78 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRL-KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 8779999999999999874-9653999999999999858999999999999975989689999999999984
No 2
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=1.00 E-value=1 Score=42.35 Aligned_cols=313 Identities=17% Similarity=0.058 Sum_probs=168.4
Q ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 02889999998220299999999986744098752899999999986148962018999999999885308998568999
Q 002692 2 DHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALI 81 (892)
Q Consensus 2 ELl~~lF~ayvR~~d~kkqQQ~AmkL~K~fp~~~Y~fWaVmSi~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~ 81 (892)
+....+-..+.+.++|..+....-+..+..|++...+...-.++.... + ..-|...+.+++...+ ....-..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---~----~~~A~~~~~~~~~~~~-~~~~~~~ 75 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG---K----SKAALPDLTKVIALKM-DFTAARL 75 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---C----HHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---C----HHHHHHHHHHHHHHCC-CCCHHHH
T ss_conf 889987999987589999999999998619656999999999999734---7----7999999999998689-9646999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCHH---CHHHH------------HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 9999999819966899988410044010---08999------------99999999984999999999999997499997
Q 002692 82 VYISILEQQSKYGDALEILSGTLGSLLV---IEVDK------------LRMQGRLLARQGDYTAAAQIYKKILELSPDDW 146 (892)
Q Consensus 82 LY~~ILe~qgK~eEALelL~~~Lg~~l~---~~~~~------------L~Lka~lL~klg~weea~~~~k~LLe~n~DDW 146 (892)
....++..+|++++|++.+..-+.. .+ ..... ....+..+...|+++++.+.+++.+..+|++.
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 154 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKS-NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA 154 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 9999999837859999999999863-976667188999999999999999999999872477999999999997689966
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHH
Q ss_conf 99999997020278755667999999998754433467613554210999999999986346899985257674058898
Q 002692 147 ECFLHYLGCLLEDDSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERR 226 (892)
Q Consensus 147 ~~w~~yLda~~el~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~fi~~l~a~~~~~~~Rgp~LA~LEL~~R 226 (892)
..|..+-.+....+ ..+++...+++... .. +.++. +...+..-
T Consensus 155 ~~~~~~~~~~~~~~--------------------------------~~~~A~~~~~~~~~--~~--~~~~~-~~~~la~~ 197 (359)
T 3ieg_A 155 ELRELRAECFIKEG--------------------------------EPRKAISDLKAASK--LK--SDNTE-AFYKISTL 197 (359)
T ss_dssp HHHHHHHHHHHHTT--------------------------------CHHHHHHHHHHHHT--TC--SCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHCC--------------------------------CHHHHHHHHHHHHH--HC--CCCHH-HHHHHHHH
T ss_conf 89999999998778--------------------------------99999999999987--39--77779-99999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 73409999048999999999980997544874899796069788999999997103789821266797897899999986
Q 002692 227 KLLYGKNNNDELMEAVLEYFLSFGHLACFTSDVEDFLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELI 306 (892)
Q Consensus 227 l~~~G~~~~~~l~~~l~~Yf~kFg~KpcCF~DLk~Yl~~L~~ee~~~ll~~i~~~~~~~s~~~~k~L~~~Ina~Kl~rll 306 (892)
....|. ..+-...+...++.+.+.+.++.-+ ..+ ..+...+....+....
T Consensus 198 ~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~----------------~~~------------~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 198 YYQLGD--HELSLSEVRECLKLDQDHKRCFAHY----------------KQV------------KKLNKLIESAEELIRD 247 (359)
T ss_dssp HHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHH----------------HHH------------HHHHHHHHHHHHHHHT
T ss_pred HHHCCC--HHHHHHHHHHHHHHCCCCHHHHHHH----------------HHH------------HHHHHHHHHHHHHHHC
T ss_conf 998498--9999999999985185645899999----------------999------------9999999999999986
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 28567976889999999999998318999999987666510399999999999864038917999999999978742998
Q 002692 307 GNTYKLLVDELERSAVQMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRH 386 (892)
Q Consensus 307 g~~~~ls~~~~~~~v~~lv~~Y~~~l~l~~~l~~tE~qp~Del~LLAa~~Ll~l~~~~~~~~~Ll~Ai~LLE~aL~kSP~ 386 (892)
|. ..+.++.|.+.+... +.+ ..+...+...+...+... +..-+|+..++.++...|.
T Consensus 248 ~~------------~~~A~~~~~~~~~~~----~~~----~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 248 GR------------YTDATSKYESVMKTE----PSV----AEYTVRSKERICHCFSKD---EKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp TC------------HHHHHHHHHHHHHHC----CSS----HHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTT
T ss_pred CC------------HHHHHHHHHHHHHCC----CCC----HHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCC
T ss_conf 89------------999999999998539----886----279999999999999883---6889999999999985922
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 068999999999972991899999985
Q 002692 387 AWQYKVLLVHLYSHLGALPLAYEWYKA 413 (892)
Q Consensus 387 N~~lkLlLirLY~~LGa~s~A~~~y~~ 413 (892)
+......+..+|..+|-...|...|..
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 379999999999880789999999999
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=40.82 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 28899999982202999999999867440987528999999999861489620189999999998853089985689999
Q 002692 3 HMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIV 82 (892)
Q Consensus 3 Ll~~lF~ayvR~~d~kkqQQ~AmkL~K~fp~~~Y~fWaVmSi~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~L 82 (892)
....+...|.+.++|..+.+..-++-+..|+...+++ ...++... + -..-|.....++.... .+..-...
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-l~~~~~~~--g-----~~~~A~~~~~~~~~~~--~~~~~~~~ 155 (597)
T 2xpi_A 86 YLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFW-LAQVYCCT--G-----DYARAKCLLTKEDLYN--RSSACRYL 155 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHT--T-----CHHHHHHHHHHTCGGG--TCHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHC--C-----CHHHHHHHHHHHHCCC--CCHHHHHH
T ss_conf 9999999998745834799999999960899357999-99999974--7-----6999999999873354--56508999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCC---------------HHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 9999998199668999884100440---------------1008999999999999849999999999999974999979
Q 002692 83 YISILEQQSKYGDALEILSGTLGSL---------------LVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWE 147 (892)
Q Consensus 83 Y~~ILe~qgK~eEALelL~~~Lg~~---------------l~~~~~~L~Lka~lL~klg~weea~~~~k~LLe~n~DDW~ 147 (892)
....+..+|++++|+++++.-.... .......+...+..+.+.|+++++.+.+++.+..+|++|.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999988669999999842488632232343343211235125899999889999839989999999999972932569
Q ss_pred HHHHHHHHH
Q ss_conf 999999702
Q 002692 148 CFLHYLGCL 156 (892)
Q Consensus 148 ~w~~yLda~ 156 (892)
.|..+....
T Consensus 236 ~~~~l~~~~ 244 (597)
T 2xpi_A 236 AFDQLVSNH 244 (597)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
T ss_conf 999999850
No 4
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=40.54 Aligned_cols=148 Identities=20% Similarity=0.106 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 88999999822029999999998674409875289999999998614896201899999999988530899856899999
Q 002692 4 MMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVY 83 (892)
Q Consensus 4 l~~lF~ayvR~~d~kkqQQ~AmkL~K~fp~~~Y~fWaVmSi~LQa~~~~~~~kLL~LA~kmleK~i~~~~iet~EEl~LY 83 (892)
...+-..|.+.++|..+-+..-++-+..|++...+.....+++... . ..-|...+.+++...+ ........+
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---~----~~~A~~~~~~al~~~p-~~~~~~~~l 100 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG---K----SKAALPDLTKVIQLKM-DFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---C----HHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---C----HHHHHHHHHHHHHCCC-CCHHHHHHH
T ss_conf 9999999998799999999999999849716899999999999879---9----7999999999984498-748999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCHHCHH---H------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99999819966899988410044010089---9------------99999999998499999999999999749999799
Q 002692 84 ISILEQQSKYGDALEILSGTLGSLLVIEV---D------------KLRMQGRLLARQGDYTAAAQIYKKILELSPDDWEC 148 (892)
Q Consensus 84 ~~ILe~qgK~eEALelL~~~Lg~~l~~~~---~------------~L~Lka~lL~klg~weea~~~~k~LLe~n~DDW~~ 148 (892)
..++..+|++++|++.+..-+.. -+... . .....+..+.+.|+++++...+++.+..+|++...
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS-NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999869999999999999724-99970168899999999999999999999998689999999999999868897699
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999997020278
Q 002692 149 FLHYLGCLLEDD 160 (892)
Q Consensus 149 w~~yLda~~el~ 160 (892)
|..+..+....+
T Consensus 180 ~~~l~~~~~~~g 191 (450)
T 2y4t_A 180 RELRAECFIKEG 191 (450)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998779
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=40.44 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 56899999999998199668999884100440100899999999999984999999999999997499997999999970
Q 002692 76 EPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGC 155 (892)
Q Consensus 76 t~EEl~LY~~ILe~qgK~eEALelL~~~Lg~~l~~~~~~L~Lka~lL~klg~weea~~~~k~LLe~n~DDW~~w~~yLda 155 (892)
....+.-.+..+..+|++++|++++..-++ .-+. ...+...+..+.+.|+++++...+++.+.. +.|...|..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLD-ITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHH
T ss_conf 999999999999874583479999999996-0899-357999999999747699999999987335-4565089999999
Q ss_pred HHCC
Q ss_conf 2027
Q 002692 156 LLED 159 (892)
Q Consensus 156 ~~el 159 (892)
..+.
T Consensus 160 ~~~~ 163 (597)
T 2xpi_A 160 LVKL 163 (597)
T ss_dssp HHHT
T ss_pred HHHH
T ss_conf 9988
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=40.38 Aligned_cols=84 Identities=13% Similarity=0.030 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 56899999999998199668999884100440100899999999999984999999999999997499997999999970
Q 002692 76 EPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGC 155 (892)
Q Consensus 76 t~EEl~LY~~ILe~qgK~eEALelL~~~Lg~~l~~~~~~L~Lka~lL~klg~weea~~~~k~LLe~n~DDW~~w~~yLda 155 (892)
..+.+.....++..+|++++|++.+..-+.. -+.....+...+.++.+.|+++++...+++.+..+|++...|..+-.+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8999999999999864299999999999863-899848999999999986899999999999986098628999999999
Q ss_pred HHCCC
Q ss_conf 20278
Q 002692 156 LLEDD 160 (892)
Q Consensus 156 ~~el~ 160 (892)
....+
T Consensus 103 ~~~~g 107 (537)
T 3fp2_A 103 NESLG 107 (537)
T ss_dssp HHHHT
T ss_pred HHHCC
T ss_conf 99838
No 7
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=38.33 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 68999999999981996689998841004401008999999999999849999999999999974999979999999702
Q 002692 77 PEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCL 156 (892)
Q Consensus 77 ~EEl~LY~~ILe~qgK~eEALelL~~~Lg~~l~~~~~~L~Lka~lL~klg~weea~~~~k~LLe~n~DDW~~w~~yLda~ 156 (892)
++.......++..+|++++|+..+..-+.. -+...+-+...+.++.+.|+++++...+++.++.+|++...|..+-.+.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 888999899999869999999999999981-9998899999999999749879999999999986998589999999999
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=37.73 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999998853089985689999999999819966899988410044010089999999999998499999999999999
Q 002692 60 LAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKIL 139 (892)
Q Consensus 60 LA~kmleK~i~~~~iet~EEl~LY~~ILe~qgK~eEALelL~~~Lg~~l~~~~~~L~Lka~lL~klg~weea~~~~k~LL 139 (892)
-|.+.+.+.....| ....-..+...++..+|+++++..+...-+.. -+...+-+...+..+.+.|+++++.+.+++.+
T Consensus 17 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 94 (388)
T 1w3b_A 17 AAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94 (388)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999998497-88999999999999868999999999999761-97866999999999987799999999999998
Q ss_pred HHCCCCHHHHHHHHHHHHCC
Q ss_conf 74999979999999702027
Q 002692 140 ELSPDDWECFLHYLGCLLED 159 (892)
Q Consensus 140 e~n~DDW~~w~~yLda~~el 159 (892)
..+|++...|..+..+....
T Consensus 95 ~~~p~~~~~~~~l~~~~~~~ 114 (388)
T 1w3b_A 95 RLKPDFIDGYINLAAALVAA 114 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHC
T ss_conf 74965399999999999985
No 9
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=1.00 E-value=1 Score=37.38 Aligned_cols=74 Identities=15% Similarity=0.124 Sum_probs=39.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 999998199668999884100440100899999999999984999999999999997499997999999970202
Q 002692 84 ISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLE 158 (892)
Q Consensus 84 ~~ILe~qgK~eEALelL~~~Lg~~l~~~~~~L~Lka~lL~klg~weea~~~~k~LLe~n~DDW~~w~~yLda~~e 158 (892)
..++..+|++++|++.+..-+.. .+.....+...+.++.+.|+++++.+.+++.+..+|++...|..+-.+...
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp ------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999960799999999999875-834389999999999981989999999999987088545989999999997
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=1.00 E-value=1 Score=36.94 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=56.8
Q ss_pred HHHHHH-HHHHHCCCHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999-9999819966899988410044010089999999999998499-99999999999974999979999999702
Q 002692 79 ALIVYI-SILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGD-YTAAAQIYKKILELSPDDWECFLHYLGCL 156 (892)
Q Consensus 79 El~LY~-~ILe~qgK~eEALelL~~~Lg~~l~~~~~~L~Lka~lL~klg~-weea~~~~k~LLe~n~DDW~~w~~yLda~ 156 (892)
+++.+. .++..+|++++|++.+..-+. .-+.....+..++.++..+|+ ++++...+++.|..+|++...|...-.+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~-l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIE-LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999999977985999999999998-693279999999999998264799999999999987887899999999999
Q ss_pred HCCC
Q ss_conf 0278
Q 002692 157 LEDD 160 (892)
Q Consensus 157 ~el~ 160 (892)
..++
T Consensus 177 ~~~g 180 (382)
T 2h6f_A 177 EWLR 180 (382)
T ss_dssp HHHT
T ss_pred HHCC
T ss_conf 9846
Done!