BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002693
(892 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 52.8 bits (125), Expect = 9e-07, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 497 FLVYAGAGLCKASTISGWVKIRRLSLMENHIEDLSN-IYPRCPHLVTLFLNNNKLEVISS 555
+L G L S + + L L N ++ L N ++ + +L L L N+L+ +
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 556 RFFHYMPSLKVLKLSHIQLTELPSRI-SKLVSLQHLDLSHTRIKELP-GELEILVNLKCL 613
F + +L L L+H QL LP + KL +L LDLS+ +++ LP G + L LK L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 614 NLNHTMYLSVIPRQLISKFSMLHVL 638
L L +P + + + L +
Sbjct: 187 RLYQNQ-LKSVPDGVFDRLTSLQYI 210
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Query: 515 VKIRRLSLMENHIEDL-SNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQ 573
K+R L L +N ++ L + I+ +L TL++ +NKL+ + F + +L L+L Q
Sbjct: 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120
Query: 574 LTELPSRI-SKLVSLQHLDLSHTRIKELP-GELEILVNLKCLNLNHTMYLSVIPRQLISK 631
L LP R+ L L +L L + ++ LP G + L +LK L L + L +P K
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDK 179
Query: 632 FSMLHVLRM 640
+ L L++
Sbjct: 180 LTELKTLKL 188
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 518 RRLSLMENHIEDL-SNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTE 576
++L L N + L S + R L L+LN+NKL+ + + F + +L+ L ++ +L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 577 LPSRI-SKLVSLQHLDLSHTRIKELPGEL-EILVNLKCLNLNHTMYLSVIPRQLISKFSM 634
LP + +LV+L L L ++K LP + + L L L+L + L +P+ + K +
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTS 158
Query: 635 LHVLRMFSS 643
L LR++++
Sbjct: 159 LKELRLYNN 167
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 515 VKIRRLSLMENHIEDLS-NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQ 573
K+ LSL N ++ L ++ + L L L NN+L+ + F + LK LKL + Q
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 574 LTELP 578
L +P
Sbjct: 193 LKRVP 197
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 497 FLVYAGAGLCKASTISGWVKIRRLSLMENHIEDLSN-IYPRCPHLVTLFLNNNKLEVISS 555
+L G L S + + L L N ++ L N ++ + +L L L N+L+ +
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 556 RFFHYMPSLKVLKLSHIQLTELPSRI-SKLVSLQHLDLSHTRIKELP-GELEILVNLKCL 613
F + +L L L H QL LP + KL +L LDL + +++ LP G + L LK L
Sbjct: 127 GVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQL 186
Query: 614 NLNHTMYLSV 623
+LN SV
Sbjct: 187 SLNDNQLKSV 196
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 520 LSLMENHIEDL-SNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELP 578
L L N ++ L ++ + +L L L+NN+L+ + F + LK L L+ QL +P
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Query: 579 SRI-SKLVSLQHL 590
+ +L SL H+
Sbjct: 198 DGVFDRLTSLTHI 210
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 520 LSLMENHIEDLSN-IYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELP 578
L L N ++ L N ++ L L+L NKL+ + + F+ + SL L LS QL LP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 579 SRI-SKLVSLQHLDLSHTRIKELP-GELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLH 636
+ + KL L+ L L+ +++ LP G + L LK L L L +P + + + L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQ 151
Query: 637 VL 638
+
Sbjct: 152 YI 153
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 515 VKIRRLSLMENHIEDLS-NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQ 573
+ ++ L L N + L ++ L L L N+L V+ S F + LK L + +
Sbjct: 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123
Query: 574 LTELPSRISKLVSLQHLDLSHTRIKELP-GELEILVNL 610
LTELP I +L L HL L ++K +P G + L +L
Sbjct: 124 LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 543 LFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPG 602
L L+N ++ IS+ F Y L L L+ LTELP+ I L +L+ LDLSH R+ LP
Sbjct: 229 LDLSNLQIFNISANIFKY-DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 603 ELEILVNLK 611
EL LK
Sbjct: 288 ELGSCFQLK 296
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 566 VLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPGELEILVNLKCLNLNHTMYLSVIP 625
L LS++Q+ + + I K L L L+ + ELP E++ L NL+ L+L+H L+ +P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLP 286
Query: 626 RQLISKFSM 634
+L S F +
Sbjct: 287 AELGSCFQL 295
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 540 LVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKE 599
L L+LN N L + + + + +L+VL LSH +LT LP+ + L++ +
Sbjct: 249 LTRLYLNGNSLTELPAEIKN-LSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT 307
Query: 600 LPGELEILVNLKCLNL 615
LP E L NL+ L +
Sbjct: 308 LPWEFGNLCNLQFLGV 323
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 520 LSLMENHIEDLS-NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELP 578
L L N + L ++ L L+L N+L+ + S F + LK L+L+ QL +P
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 579 S-RISKLVSLQHLDLSHTRIKELP-GELEILVNLKCLNL 615
+ KL +LQ L LS +++ +P G + L L+ + L
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 519 RLSLMENHIEDLSNIYPR-CPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTEL 577
+L L + LS+ R L L L+ N+L+ +S+ F + L L L++ QL L
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 578 PSRI-SKLVSLQHLDLSHTRIKELP-GELEILVNLKCLNLNHTMYLSVIPRQLISKFSML 635
P + L L L L ++K LP G + L LK L LN T L IP K + L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDKLTNL 157
Query: 636 HVLRM 640
L +
Sbjct: 158 QTLSL 162
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 520 LSLMENHIEDLS-NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELP 578
L L N + L ++ L L+L N+L+ + S F + LK L+L+ QL +P
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 579 S-RISKLVSLQHLDLSHTRIKELP-GELEILVNLKCLNL 615
+ KL +LQ L LS +++ +P G + L L+ + L
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 519 RLSLMENHIEDLSNIYPR-CPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTEL 577
+L L + LS+ R L L L+ N+L+ +S+ F + L L L++ QL L
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 578 PSRI-SKLVSLQHLDLSHTRIKELP-GELEILVNLKCLNLNHTMYLSVIPRQLISKFSML 635
P + L L L L ++K LP G + L LK L LN T L IP K + L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDKLTNL 157
Query: 636 HVLRM 640
L +
Sbjct: 158 QTLSL 162
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 516 KIRRLSLMENHIEDL-SNIYPRCPHLVTLFLNN-NKLEVISSRFFHYMPSLKVLKLSHIQ 573
K+R L L N IE + S + R P L L L +LE IS F + +L+ L L
Sbjct: 108 KLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCN 167
Query: 574 LTELPSRISKLVSLQHLDLSHTRIKEL-PGELEILVNLKCLNLNHTMYLSV 623
L ++P+ ++ LV L+ L+LS R+ + PG + L +L+ L L H ++
Sbjct: 168 LKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 509 STISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLK 568
+ G V +R L+L +++D+ N+ L L L+ N+L++I F + SL+ L
Sbjct: 150 AAFEGLVNLRYLNLGMCNLKDIPNLTALV-RLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 569 LSHIQLTELP-SRISKLVSLQHLDLSHTRIKELPGEL-EILVNLKCLNLNHTMY 620
L H Q+ + + L SL+ L+LSH + LP +L L L+ ++LNH +
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 538 PHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPS-RISKLVSLQHLDLSHTR 596
P L TL L +N+L + ++ F Y+ L+ L L + + +PS +++ SL+ LDL +
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 597 IKELPGE--LEILVNLKCLNL 615
E E E LVNL+ LNL
Sbjct: 143 RLEYISEAAFEGLVNLRYLNL 163
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 516 KIRRLSLMENHIEDL-SNIYPRCPHLVTLFLNN-NKLEVISSRFFHYMPSLKVLKLSHIQ 573
K+R L L N IE + S + R P L L L +LE IS F + +L+ L L
Sbjct: 108 KLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCN 167
Query: 574 LTELPSRISKLVSLQHLDLSHTRIKEL-PGELEILVNLKCLNLNHTMYLSV 623
L ++P+ ++ LV L+ L+LS R+ + PG + L +L+ L L H ++
Sbjct: 168 LKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 509 STISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLK 568
+ G V +R L+L +++D+ N+ L L L+ N+L++I F + SL+ L
Sbjct: 150 AAFEGLVNLRYLNLGMCNLKDIPNLTALV-RLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 569 LSHIQLTELP-SRISKLVSLQHLDLSHTRIKELPGEL-EILVNLKCLNLNHTMY 620
L H Q+ + + L SL+ L+LSH + LP +L L L+ ++LNH +
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 538 PHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPS-RISKLVSLQHLDLSHTR 596
P L TL L +N+L + ++ F Y+ L+ L L + + +PS +++ SL+ LDL +
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 597 IKELPGE--LEILVNLKCLNL 615
E E E LVNL+ LNL
Sbjct: 143 RLEYISEAAFEGLVNLRYLNL 163
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 507 KASTISGWVKIRRLSLMENHIEDL-SNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLK 565
+ +G + L L +N + + S + L L+L NN +E I S F+ +PSL
Sbjct: 115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174
Query: 566 VLKLSHIQLTELPSR--ISKLVSLQHLDLSHTRIKELPGELEILVNLKCLNLNHTMYLSV 623
L L ++ E S L +L++L+L IK++P L LV L+ L ++ + +
Sbjct: 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEI 233
Query: 624 IPRQLISKFSMLHVLRMFSSLYFKNSEVS 652
P H L L+ NS+VS
Sbjct: 234 RPGS-------FHGLSSLKKLWVMNSQVS 255
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 513 GWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHI 572
G ++ L+L +I+D+ N+ P L L ++ N I FH + SLK L + +
Sbjct: 194 GLFNLKYLNLGMCNIKDMPNLTPLV-GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252
Query: 573 QLTELP-SRISKLVSLQHLDLSHTRIKELPGEL 604
Q++ + + L SL L+L+H + LP +L
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 516 KIRRLSLMENHIEDLSN-IYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQL 574
+R L L NH+ L ++ L L L NN + V+ F M L+ L LS Q+
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 575 TELPSRI----SKLVSLQHLDLSHTRIKELP 601
+ P + +KL L LDLS ++K+LP
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 515 VKIRRLSLMENHIEDLSN-IYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQ 573
++ +LSL +N I+ L + ++ + L L+L+ NKL+ + + F + LK L L Q
Sbjct: 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ 111
Query: 574 LTELPSRI-SKLVSLQHL 590
L +P I +L SLQ +
Sbjct: 112 LKSVPDGIFDRLTSLQKI 129
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 543 LFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRI-SKLVSLQHLDLSHTRIKELP 601
L L +NKL+ + F + L L LS Q+ LP + KL L L L +++ LP
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 602 -GELEILVNLKCLNLNHTMYLSVIPRQLISKFSMLH 636
G + L LK L L+ T L +P + + + L
Sbjct: 93 NGVFDKLTQLKELALD-TNQLKSVPDGIFDRLTSLQ 127
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 508 ASTISGWVKIRRLSLMENHIEDLS--NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLK 565
+S G ++ L ++++ +S +++ +L+ L +++ V + F+ + SL+
Sbjct: 413 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472
Query: 566 VLKLSHIQLTE--LPSRISKLVSLQHLDLSHTRIKEL-PGELEILVNLKCLNLNHTMYLS 622
VLK++ E LP ++L +L LDLS ++++L P L +L+ LN++H + S
Sbjct: 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532
Query: 623 V 623
+
Sbjct: 533 L 533
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 563 SLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPGELEILV---NLKCLNLNHTM 619
SLK L LS + + S L L+HLD H+ +K++ E + + NL L+++HT
Sbjct: 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHT- 455
Query: 620 YLSVIPRQLISKFSMLHVLRMFSSLYFKN 648
+ V + + S L VL+M + + +N
Sbjct: 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 560 YMPSLKVLKLSH--IQLTELPSRISKLVSLQHLDLSHTRIKEL 600
++ +LK L ++H IQ +LP S L +L+HLDLS +I+ +
Sbjct: 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 508 ASTISGWVKIRRLSLMENHIEDLS--NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLK 565
+S G ++ L ++++ +S +++ +L+ L +++ V + F+ + SL+
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 566 VLKLSHIQLTE--LPSRISKLVSLQHLDLSHTRIKEL-PGELEILVNLKCLNLNHTMYLS 622
VLK++ E LP ++L +L LDLS ++++L P L +L+ LN++H + S
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
Query: 623 V 623
+
Sbjct: 509 L 509
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 560 YMPSLKVLKLSH--IQLTELPSRISKLVSLQHLDLSHTRIKEL 600
++ +LK L ++H IQ +LP S L +L+HLDLS +I+ +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 563 SLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPGELEILV---NLKCLNLNHTM 619
SLK L LS + + S L L+HLD H+ +K++ E + + NL L+++HT
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHT- 431
Query: 620 YLSVIPRQLISKFSMLHVLRM 640
+ V + + S L VL+M
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKM 452
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 16/138 (11%)
Query: 514 WVK--IRRLSLMENHIEDLSNIYPRC-PHLVTLFLNNN----KLEVISSRFFHYMPSLKV 566
W+K ++ LS+ + H + S R P L TL L++N + +IS+ P+L+V
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205
Query: 567 LKLSHIQLTELPSRI-----SKLVSLQHLDLSHTRIKELPG--ELEILVNLKCLNLNHTM 619
L L + + E PS + + V LQ LDLSH +++ G + L LNL+ T
Sbjct: 206 LALRNAGM-ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT- 263
Query: 620 YLSVIPRQLISKFSMLHV 637
L +P+ L +K S+L +
Sbjct: 264 GLKQVPKGLPAKLSVLDL 281
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 508 ASTISGWVKIRRLSLMENHIEDLS--NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLK 565
+S G ++ L ++++ +S +++ +L+ L +++ V + F+ + SL+
Sbjct: 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153
Query: 566 VLKLSHIQLTE--LPSRISKLVSLQHLDLSHTRIKEL-PGELEILVNLKCLNLNHTMYLS 622
VLK++ E LP ++L +L LDLS ++++L P L +L+ LN++H + S
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213
Query: 623 V 623
+
Sbjct: 214 L 214
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 519 RLSLMENHIEDLSN-IYPRCPHLVTLFLNNNKLEV--ISSRFFHYMPSLKVLKLSHIQLT 575
RL L N ++ L + ++ + L L L++N L S+ SLK L LS +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 576 ELPSRISKLVSLQHLDLSHTRIKELPGELEILV---NLKCLNLNHTMYLSVIPRQLISKF 632
+ S L L+HLD H+ +K++ E + + NL L+++HT + V + +
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGL 149
Query: 633 SMLHVLRMFSSLYFKN 648
S L VL+M + + +N
Sbjct: 150 SSLEVLKMAGNSFQEN 165
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 513 GWVKIRRLSLMENHIED--LSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLS 570
G + L + N +D LSN++ +L L L+ +LE IS F + L++L +S
Sbjct: 441 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 500
Query: 571 HIQLTEL-PSRISKLVSLQHLDLSHTRIKELPGELE 605
H L L S ++L SL LD S RI+ G L+
Sbjct: 501 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 536
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 513 GWVKIRRLSLMENHIED--LSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLS 570
G + L + N +D LSN++ +L L L+ +LE IS F + L++L +S
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505
Query: 571 HIQLTEL-PSRISKLVSLQHLDLSHTRIKELPGELE 605
H L L S ++L SL LD S RI+ G L+
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 509 STISGWVKIRRLSLMENHIEDLS-NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVL 567
S S + + +L+L +N I + N + HL+ L L+ N L I SR F + L+VL
Sbjct: 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352
Query: 568 KLSHIQLTELPSR-ISKLVSLQHLDLSHTRIKELP-GELEILVNLKCLNLNHTMYLSVIP 625
LS+ + L + L +L+ L L ++K +P G + L +L+ + L+ + P
Sbjct: 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Query: 626 R 626
R
Sbjct: 413 R 413
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 543 LFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRI-SKLVSLQHLDLSHTRIKELP 601
L+LNNN++ + F ++ +L+ L + +LT +P+ + KL L LDL+ +K +P
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 520 LSLMENHIEDL-SNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELP 578
L L N I +L + + HL L L NNK+ I + F + L+ L +S L E+P
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 579 SRISKLVSLQHLDLSHTRIKELP-GELEILVNLKCLNL 615
+ SL L + RI+++P G L N+ C+ +
Sbjct: 119 PNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 32/146 (21%)
Query: 504 GLCKAST------ISGWVK-IRRLSLMENHIEDLSNI-YPRCPHLVTLFLNNNKLEVISS 555
G+CK S+ SG + ++ L L N I +SN RC +L L L +N + I
Sbjct: 34 GICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93
Query: 556 RFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPGE-LEILVNLKCLN 614
F S L SL+HLDLS+ + L + L +L LN
Sbjct: 94 DSF-----------------------SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130
Query: 615 LNHTMYLSVIPRQLISKFSMLHVLRM 640
L Y ++ L S + L +LR+
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRV 156
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 545 LNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELP-GE 603
LN ++ E+ + +P L L LSH QL LP L +L LD+S R+ LP G
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 604 LEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRM 640
L L L+ L L L +P L++ L L +
Sbjct: 120 LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSL 155
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 540 LVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLD 591
L L+L N+L+ + P L+ L L++ QLTELP+ + L L++LD
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL--LNGLENLD 175
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 545 LNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELP-GE 603
LN ++ E+ + +P L L LSH QL LP L +L LD+S R+ LP G
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 604 LEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRM 640
L L L+ L L L +P L++ L L +
Sbjct: 120 LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSL 155
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 540 LVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLD 591
L L+L N+L+ + P L+ L L++ QLTELP+ + L L++LD
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL--LNGLENLD 175
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 545 LNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELP-GE 603
LN ++ E+ + +P L L LSH QL LP L +L LD+S R+ LP G
Sbjct: 61 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 120
Query: 604 LEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRM 640
L L L+ L L L +P L++ L L +
Sbjct: 121 LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSL 156
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 545 LNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELP-GE 603
LN ++ E+ + +P L L LSH QL LP L +L LD+S R+ LP G
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 604 LEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRM 640
L L L+ L L L +P L++ L L +
Sbjct: 120 LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSL 155
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 545 LNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELP-GE 603
LN ++ E+ + +P L L LSH QL LP L +L LD+S R+ LP G
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 604 LEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRM 640
L L L+ L L L +P L++ L L +
Sbjct: 120 LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSL 155
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 545 LNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELP-GE 603
LN ++ E+ + +P L L LSH QL LP L +L LD+S R+ LP G
Sbjct: 60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 604 LEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRM 640
L L L+ L L L +P L++ L L +
Sbjct: 120 LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSL 155
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 545 LNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELP-GE 603
LN ++ E+ + +P L L LSH QL LP L +L LD+S R+ LP G
Sbjct: 60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 604 LEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRM 640
L L L+ L L L +P L++ L L +
Sbjct: 120 LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSL 155
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 545 LNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELP-GE 603
LN ++ E+ + +P L L LSH QL LP L +L LD+S R+ LP G
Sbjct: 60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 604 LEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRM 640
L L L+ L L L +P L++ L L +
Sbjct: 120 LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSL 155
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 512 SGWVKIRRLSLMENHIEDLSN-IYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLS 570
+G + L L +N + + N + L L+L NN +E I S F+ +PSL+ L L
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168
Query: 571 HIQLTELPSR--ISKLVSLQHLDLSHTRIKELPGELEILVNLKCLNLNHTMYLSVIP 625
++ S L +L++L+L+ ++E+P L L+ L L+L+ ++ P
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRP 224
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 335 DIPELAQMVAKECGGLPLALITIGRAMAYKTTPEEWRYAIQVLR 378
D+PE A + KEC G PL + IG + + P W Y ++ L+
Sbjct: 311 DLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQ 352
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 38/126 (30%)
Query: 520 LSLMENHIEDLSNIY--PRCPHLVTLFLNNNKLEVISS---------------------- 555
+ L EN +E+L +Y R PHL L LN N+ S
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465
Query: 556 --------RFFHYMPSLKVLKLSHIQLTELPSRI-SKLVSLQHLDLSHTRI-----KELP 601
F + L+VL L+H L LP + S L +L+ L L+ R+ +LP
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525
Query: 602 GELEIL 607
LEIL
Sbjct: 526 ANLEIL 531
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 532 NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLD 591
+++ HL L+LN+N L + F ++ +L+ L L+ +LT L S +L+ LD
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL-SHNDLPANLEILD 532
Query: 592 LSHTRIKELPGELEILVNLKCLNLNHTMYL 621
+S ++ L ++ V+L L++ H ++
Sbjct: 533 ISRNQL--LAPNPDVFVSLSVLDITHNKFI 560
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 20/165 (12%)
Query: 495 ENFLVYAGAGLCKASTISGWVKIRRLSLMENHIEDL--SNIYPRCPHLVTLFLNNNKLEV 552
+N L++ L + +TI L++ +N+I +L S+I L L +++N+++
Sbjct: 9 KNGLIHVPKDLSQKTTI--------LNISQNYISELWTSDIL-SLSKLRILIISHNRIQY 59
Query: 553 ISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELP--GELEILVNL 610
+ F + L+ L LSH +L ++ + V+L+HLDLS LP E + L
Sbjct: 60 LDISVFKFNQELEYLDLSHNKLVKISCHPT--VNLKHLDLSFNAFDALPICKEFGNMSQL 117
Query: 611 KCLNLN--HTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSG 653
K L L+ H SV+P I+ ++ VL + Y + + G
Sbjct: 118 KFLGLSTTHLEKSSVLP---IAHLNISKVLLVLGETYGEKEDPEG 159
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 564 LKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPGELEILVNLKCLNL 615
++VL L+H LT L + +L+ + HLDLSH R++ LP L L+CL +
Sbjct: 443 VRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPP---ALAALRCLEV 490
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 564 LKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPGELEILVNLKCLNL 615
++VL L+H LT L + +L+ + HLDLSH R++ LP L L+CL +
Sbjct: 443 VRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPP---ALAALRCLEV 490
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 488 CEVEKEKENFLVYAGAGLCKASTISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNN 547
C++ E N + + L +ST + +++ L L H+ L + L L LN
Sbjct: 251 CDMSVESINLQKHRFSDL-SSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNA 309
Query: 548 NKLEVISSRFFHYMPSLKVLKL-SHIQLTELPSR-ISKLVSLQHLDLSHTRIKELPGELE 605
N + + PSL+ L + +++ +L +R + KL +LQ LDLSH+ I E
Sbjct: 310 NSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDI-----EAS 364
Query: 606 ILVNLKCLNLNHTMYLSV 623
NL+ NL H YL++
Sbjct: 365 DCCNLQLKNLRHLQYLNL 382
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 335 DIPELAQMVAKECGGLPLALITIGRAMAYKTTPEEWRYAIQVLR 378
D+PE A + KEC G PL + IG + + P W Y ++ L+
Sbjct: 305 DLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQ 346
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 533 IYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRIS-KLVSLQHLD 591
++ R PHLV L L N+L I F ++ L+L ++ E+ +++ L L+ L+
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 592 LSHTRIK-ELPGELEILVNLKCLNL 615
L +I +PG E L +L LNL
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNL 133
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 32/146 (21%)
Query: 504 GLCKAST------ISGWVK-IRRLSLMENHIEDLSNI-YPRCPHLVTLFLNNNKLEVISS 555
G+CK S+ SG + ++ L L N I +SN RC +L L L +N + I
Sbjct: 8 GICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 67
Query: 556 RFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPGE-LEILVNLKCLN 614
F S L SL+HLDLS+ + L + L +L LN
Sbjct: 68 DSF-----------------------SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 104
Query: 615 LNHTMYLSVIPRQLISKFSMLHVLRM 640
L Y ++ L S + L +LR+
Sbjct: 105 LLGNPYKTLGETSLFSHLTKLQILRV 130
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 520 LSLMENHIEDLS-NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELP 578
L L +N I L ++ R L L L+NN+L V+ + F + L L L+ QL +P
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 579 -SRISKLVSLQHL 590
L SL H+
Sbjct: 103 RGAFDNLKSLTHI 115
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 520 LSLMENHIEDLS-NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELP 578
L L +N I L ++ R L L L+NN+L V+ + F + L L L+ QL +P
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 579 -SRISKLVSLQHL 590
L SL H+
Sbjct: 95 RGAFDNLKSLTHI 107
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 520 LSLMENHIEDLS-NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELP 578
L L +N I L ++ R L L L+NN+L V+ + F + L L L+ QL +P
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 579 -SRISKLVSLQHL 590
L SL H+
Sbjct: 95 RGAFDNLRSLTHI 107
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 32/161 (19%)
Query: 720 AELKHLNRLR---IRDCEELEELKVDLRQSCVFNSLQKVQISLCSKLKDLTFLVFAP--- 773
A + LNRLR IR C EL EL L + Q + ++L S + T + P
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL-VNLQSLRLEWTGIRSLPASI 202
Query: 774 ----NVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNPFAKLQHLEL---VCLRNLNSI 826
N+KS++IR+ + + + KL+ L+L LRN I
Sbjct: 203 ANLQNLKSLKIRNS----------PLSALGPAIHH----LPKLEELDLRGCTALRNYPPI 248
Query: 827 YWKPLPFSQLKEMLVDDCYFLKKLPLDFNSAKE-RKIVIRG 866
+ P LK +++ DC L LPLD + + K+ +RG
Sbjct: 249 FGGRAP---LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 573 QLTELPSRISK---------LVSLQHLDLSHTRIKELPGELEILVNLKCLNLNHTMYLSV 623
+LTELP ++ LV+LQ L L T I+ LP + L NLK L + ++ ++
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL 221
Query: 624 IP 625
P
Sbjct: 222 GP 223
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 545 LNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELP-GE 603
LN ++ E+ + +P L L LSH QL LP L +L LD+S R+ LP G
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 604 LEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRM 640
L L L+ L L L +P L++ L L +
Sbjct: 120 LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSL 155
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 543 LFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLD 591
L+L N+L+ + P L+ L L++ QLTELP+ + L L++LD
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL--LNGLENLD 175
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 545 LNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELP-GE 603
LN ++ E+ + +P L L LSH QL LP L +L LD+S R+ LP G
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 604 LEILVNLKCLNLNHTMYLSVIPRQLISKFSMLHVLRM 640
L L L+ L L L +P L++ L L +
Sbjct: 120 LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSL 155
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 543 LFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLD 591
L+L N+L+ + P L+ L L++ QLTELP+ + L L++LD
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL--LNGLENLD 175
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 563 SLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPGELEILV---NLKCLNLNHTM 619
SLK L LS + + S L L+HLD H+ +K++ E + + NL L+++HT
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHT- 431
Query: 620 YLSVIPRQLISKFSMLHVLRMFSSLYFKN 648
+ V + + S L VL+M + + +N
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 508 ASTISGWVKIRRLSLMENHIEDLS--NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLK 565
+S G ++ L ++++ +S +++ +L+ L +++ V + F+ + SL+
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 566 VLKLSHIQLTE--LPSRISKLVSLQHLDLSHTRIKEL-PGELEILVNLKCLNLNHTMYLS 622
VLK++ E LP ++L +L LDLS ++++L P L +L+ LN+ L
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LK 507
Query: 623 VIPRQLISKFSMLH 636
+P + + + L
Sbjct: 508 SVPDGIFDRLTSLQ 521
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 560 YMPSLKVLKLSH--IQLTELPSRISKLVSLQHLDLSHTRIKEL 600
++ +LK L ++H IQ +LP S L +L+HLDLS +I+ +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 469 EDDKVKMHDVIRDMTLWIACEVEKEKENFLVYAGAGLCKASTISGWVKIRRLSLMENHIE 528
E +KV++H +I + A + L + + K S++SG +R LSL N I+
Sbjct: 25 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK 84
Query: 529 DLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQ 588
+ N+ L L+++ N++ +S + +L+VL +S+ ++T I KL +L
Sbjct: 85 KIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNW-GEIDKLAALD 141
Query: 589 HLD 591
L+
Sbjct: 142 KLE 144
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 33.1 bits (74), Expect = 0.67, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 469 EDDKVKMHDVIRDMTLWIACEVEKEKENFLVYAGAGLCKASTISGWVKIRRLSLMENHIE 528
E +KV++H +I + A + L + + K S++SG +R LSL N I+
Sbjct: 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK 83
Query: 529 DLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQ 588
+ N+ L L+++ N++ +S + +L+VL +S+ ++T I KL +L
Sbjct: 84 KIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNW-GEIDKLAALD 140
Query: 589 HLD 591
L+
Sbjct: 141 KLE 143
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 539 HLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIK 598
+L TL L NNK+ IS F + L+ L LS QL ELP ++ K +LQ L + I
Sbjct: 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENEIT 134
Query: 599 EL 600
++
Sbjct: 135 KV 136
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 539 HLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIK 598
+L TL L NNK+ IS F + L+ L LS QL ELP ++ K +LQ L + I
Sbjct: 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENEIT 134
Query: 599 EL 600
++
Sbjct: 135 KV 136
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 496 NFLVYAGAGLCKASTISGWVKIRRLSLMENHIEDLSNIYPRCP-HLVTLFLNNNKLEVIS 554
N+L + + + I+ + LSL N IED+S + H T ++N ++
Sbjct: 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN----QITD 213
Query: 555 SRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKELPGELEILVNLKCLN 614
L LK+ + ++T+L S ++ L L L++ +I ++ ++ L LK LN
Sbjct: 214 ITPVANXTRLNSLKIGNNKITDL-SPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKXLN 271
Query: 615 LNHTMYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGD 654
+ IS S+L+ L +SL+ N+++ +
Sbjct: 272 ---------VGSNQISDISVLNNLSQLNSLFLNNNQLGNE 302
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 505 LCKASTISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSL 564
+ + + K++ L++ N I D+S + L +LFLNNN+L + +L
Sbjct: 255 ISDINAVKDLTKLKXLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNL 313
Query: 565 KVLKLSHIQLTELPSRISKLVSLQHLD 591
L LS +T+ I L SL D
Sbjct: 314 TTLFLSQNHITD----IRPLASLSKXD 336
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 508 ASTISGWVKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVL 567
A+ ++ + L L N E S+++ +L ++ +NKL + F MP LK L
Sbjct: 140 ANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQL 199
Query: 568 KLSHIQLTELPSRI-SKLVSLQHL 590
L+ QL +P I +L SLQ +
Sbjct: 200 NLASNQLKSVPDGIFDRLTSLQKI 223
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 560 YMPSLKVLKLSH--IQLTELPSRISKLVSLQHLDLSHTRIKEL 600
++ +LK L ++H IQ +LP S L +L+HLDLS +I+ +
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 553 ISSRFFHYMPSLKVLKLSHIQLTELPSRISKLVSLQHLDLSHTRIKEL 600
ISS FH L+ L L+ L+ELPS + L +L+ L LS + + L
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 560 YMPSLKVLKLSH--IQLTELPSRISKLVSLQHLDLSHTRIKEL 600
++ +LK L ++H IQ +LP S L +L+HLDLS +I+ +
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3IJI|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJI|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJL|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Pro-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJL|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Pro-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJQ|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu; Productive
Substrate Binding.
pdb|3IJQ|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu; Productive
Substrate Binding
Length = 338
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 280 NSRNVASKVVFTTRLLDVCGLMEAHKKFKVECLSDEDAWQLFREKVGEETLNYHHDIPEL 339
+ ++ A+K L D+ G + +K+ W L +EK T D P++
Sbjct: 86 SPKDTAAKAAVDIALHDLVGKLLGAPWYKI--------WGLNKEKTPSTTFTIGIDTPDV 137
Query: 340 AQMVAKECGGL 350
+ KEC GL
Sbjct: 138 VRAKTKECAGL 148
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 560 YMPSLKVLKLSH--IQLTELPSRISKLVSLQHLDLSHTRIKEL 600
++ +LK L ++H IQ +LP S L +L+HLDLS +I+ +
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 560 YMPSLKVLKLSH--IQLTELPSRISKLVSLQHLDLSHTRIKEL 600
++ +LK L ++H IQ +LP S L +L+HLDLS +I+ +
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 560 YMPSLKVLKLSH--IQLTELPSRISKLVSLQHLDLSHTRIKEL 600
++ +LK L ++H IQ +LP S L +L+HLDLS +I+ +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 539 HLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSR-ISKLVSLQHLDLSHTRI 597
HL + L+NN++ +S++ F M L L LS+ +L +P R L SL+ L L I
Sbjct: 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Query: 598 KELP 601
+P
Sbjct: 115 SVVP 118
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 525 NHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKL 584
N I D++ + P L +L+L NNK+ I+ + L L L Q++++ ++ L
Sbjct: 122 NGISDINGLV-HLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGL 177
Query: 585 VSLQHLDLSHTRIKELPG-----ELEI--LVNLKCLN--LNHTMYLSVIP 625
LQ+L LS I +L L++ L + +CLN +NH L V+P
Sbjct: 178 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNL-VVP 226
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 335 DIPELAQMVAKECGGLPLALITIGRAMAYKTTPEEWRYAIQVLR 378
D+P A + KEC G PL + IG + + P W Y ++ L+
Sbjct: 305 DLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQ 346
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 516 KIRRLSLMENHIEDLS-NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQL 574
++R+++ N I D+ + + + L +N+LE + + F + SLK L L ++
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 575 TELPS-RISKLVSLQHLDLSHTRIKEL-PGELEILVNLKCLNL 615
T + + L S++ L L +I + PG + L +L LNL
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 335 DIPELAQMVAKECGGLPLALITIGRAMAYKTTPEEWRYAIQVLR 378
D+P A + KEC G PL + IG + + P W Y ++ L+
Sbjct: 312 DLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQ 353
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 525 NHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKL 584
N I D++ + P L +L+L NNK+ I+ + L L L Q++++ ++ L
Sbjct: 120 NGISDINGLV-HLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGL 175
Query: 585 VSLQHLDLSHTRIKELPG-----ELEI--LVNLKCLN--LNHTMYLSVIP 625
LQ+L LS I +L L++ L + +CLN +NH L V+P
Sbjct: 176 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNL-VVP 224
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 515 VKIRRLSLMENHI-EDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQ 573
V IRRL + + ++ DLS +Y + + + N+K+ ++ F ++ SL+ L LS
Sbjct: 312 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 371
Query: 574 LTE--LPSRISKLV--SLQHLDLSHTRIKELPGELEILVNLKCL 613
+ E L + K SLQ L LS ++ + EIL+ LK L
Sbjct: 372 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 415
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 525 NHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKL 584
N I D++ + P L +L+L NNK+ I+ + L L L Q+ + +++L
Sbjct: 120 NGISDINGLV-HLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVP-LARL 175
Query: 585 VSLQHLDLSHTRIKELPGELEILVNLKCLNL 615
LQ+L LS I +L L L NL L L
Sbjct: 176 TKLQNLYLSKNHISDLRA-LRGLKNLDVLEL 205
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 532 NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELP-SRISKLVSLQHL 590
+++ P L L L N L + FH P L L +S+ L + SLQ+L
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176
Query: 591 DLSHTRIKELPGELEILVNLKCLNLNH----TMYLSVIPRQLISKFSMLHVLR 639
LS R+ + +L ++ +L N+++ T+ + + +L + + ++V+R
Sbjct: 177 QLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 515 VKIRRLSLMENHI-EDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQ 573
V IRRL + + ++ DLS +Y + + + N+K+ ++ F ++ SL+ L LS
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345
Query: 574 LTE--LPSRISKLV--SLQHLDLSHTRIKELPGELEILVNLKCL 613
+ E L + K SLQ L LS ++ + EIL+ LK L
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 19/158 (12%)
Query: 515 VKIRRLSLMENHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYM------PSLKVLK 568
V++ L E H +D+ + P L L L N+L H + P+ K+ K
Sbjct: 29 VRLDDCGLTEEHCKDIGSALRANPSLTELCLRTNEL---GDAGVHLVLQGLQSPTCKIQK 85
Query: 569 LS--HIQLTE-----LPSRISKLVSLQHLDLSHTRIKELPGEL--EILVNLKC-LNLNHT 618
LS + LTE LPS + L +L+ L LS + + L E L++ +C L
Sbjct: 86 LSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQL 145
Query: 619 MYLSVIPRQLISKFSMLHVLRMFSSLYFKNSEVSGDGV 656
Y + S+L R L N+++ G
Sbjct: 146 EYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGA 183
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 515 VKIRRLSLMENHIEDLS-NIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQ 573
+ R L L +N I+ L+ + + PHL L LN N + + F+ + +L+ L L +
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 574 LTELPSRI-SKLVSLQHLDLSHTRIKELPGEL-EILVNLKCLNL--NHTMYLS 622
L +P + + L +L LD+S +I L + + L NLK L + N +Y+S
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144
>pdb|1I37|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Dihydrotestosterone
pdb|2IHQ|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domian Complex With An N-Aryl-
Hydroxybicyclohydantoin
pdb|2NW4|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Bms-564929
pdb|3G0W|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With An N-Aryl-Oxazolidin 2-Imine
Inhibitor
Length = 260
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 147 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 204
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNP 808
VQ + +L TF L+ ++ S++ +A EIISVQ P+ + + P
Sbjct: 205 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ----VPKILSGKVKP 254
>pdb|1Z95|A Chain A, Crystal Structure Of The Androgen Receptor Ligand-Binding
Domain W741l Mutant Complex With R-Bicalutamide
Length = 246
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 135 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 192
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNP 808
VQ + +L TF L+ ++ S++ +A EIISVQ P+ + + P
Sbjct: 193 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ----VPKILSGKVKP 242
>pdb|3RLJ|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-22
Length = 247
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 136 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 193
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQ 793
VQ + +L TF L+ ++ S++ +A EIISVQ
Sbjct: 194 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ 232
>pdb|2AX9|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With R-3
pdb|2AXA|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With S-1
pdb|2YLO|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLP|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLQ|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|3ZQT|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|4HLW|A Chain A, Targeting The Binding Function 3 (bf3) Site Of The Human
Androgen Receptor Through Virtual Screening. 2.
Development Of 2-((2- Phenoxyethyl)
Thio)-1h-benzoimidazole Derivatives
Length = 256
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 143 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 200
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNP 808
VQ + +L TF L+ ++ S++ +A EIISVQ P+ + + P
Sbjct: 201 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ----VPKILSGKVKP 250
>pdb|3L3X|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The First Motif Of Steroid Receptor
Coactivator 3
pdb|3L3Z|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The Third Motif Of Steroid Receptor
Coactivator 3
Length = 250
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 138 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 195
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQ 793
VQ + +L TF L+ ++ S++ +A EIISVQ
Sbjct: 196 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ 234
>pdb|1XOW|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With An Androgen Receptor Nh2-
Terminal Peptide, Ar20-30, And R1881
pdb|1XQ3|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With R1881
pdb|2AO6|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With Tif2(Iii) 740-753 Peptide And
R1881
pdb|3B5R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-31
pdb|3B65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-24
pdb|3B66|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-21
pdb|3B67|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-23
pdb|3B68|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-4
pdb|2YHD|A Chain A, Human Androgen Receptor In Complex With Af2 Small Molecule
Inhibitor
pdb|3V4A|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 2
Length = 249
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 136 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 193
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNP 808
VQ + +L TF L+ ++ S++ +A EIISVQ P+ + + P
Sbjct: 194 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ----VPKILSGKVKP 243
>pdb|1E3G|A Chain A, Human Androgen Receptor Ligand Binding In Complex With The
Ligand Metribolone (R1881)
Length = 263
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 150 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 207
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNP 808
VQ + +L TF L+ ++ S++ +A EIISVQ P+ + + P
Sbjct: 208 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ----VPKILSGKVKP 257
>pdb|2Z4J|A Chain A, Crystal Structure Of Ar Lbd With Shp Peptide Nr Box 2
Length = 248
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 136 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 193
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQ 793
VQ + +L TF L+ ++ S++ +A EIISVQ
Sbjct: 194 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ 232
>pdb|1XJ7|A Chain A, Complex Androgen Receptor Lbd And Rac3 Peptide
pdb|2Q7I|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And An Ar 20-30 Peptide
pdb|2Q7J|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And A Tif2 Box 3 Coactivator
Peptide 740-753
Length = 257
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 144 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 201
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNP 808
VQ + +L TF L+ ++ S++ +A EIISVQ P+ + + P
Sbjct: 202 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ----VPKILSGKVKP 251
>pdb|1T73|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxff Motif
pdb|1T74|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxlf Motif
pdb|1T76|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxvw Motif
pdb|1T79|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlw Motif
pdb|1T7F|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Lxxll Motif
pdb|1T7M|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxyf Motif
pdb|1T7R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlf Motif
pdb|1T7T|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With 5-Alpha Dihydrotestosterone
Length = 269
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 156 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 213
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNP 808
VQ + +L TF L+ ++ S++ +A EIISVQ P+ + + P
Sbjct: 214 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ----VPKILSGKVKP 263
>pdb|2AM9|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Testosterone
pdb|2AMA|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Dihydrotestosterone
pdb|2AMB|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Tetrahydrogestrinone
pdb|2PNU|A Chain A, Crystal Structure Of Human Androgen Receptor
Ligand-Binding Domain In Complex With Em-5744
pdb|3V49|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 1
Length = 266
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 153 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 210
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNP 808
VQ + +L TF L+ ++ S++ +A EIISVQ P+ + + P
Sbjct: 211 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ----VPKILSGKVKP 260
>pdb|2AX8|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain W741l Mutant In Complex With S-1
Length = 256
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 143 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 200
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNP 808
VQ + +L TF L+ ++ S++ +A EIISVQ P+ + + P
Sbjct: 201 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ----VPKILSGKVKP 250
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 547 NNKLEVISSRFFHYMPSLKVLKLSHIQ--LTELPSRISKLVSLQHLDLSHTRIKELP 601
N+ LEVI + F +P L +++ L P L +LQ+L +S+T IK LP
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 120
>pdb|2HVC|A Chain A, The Crystal Structure Of Ligand-Binding Domain (Lbd) Of
Human Androgen Receptor In Complex With A Selective
Modulator Lgd2226
Length = 250
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 138 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 195
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNP 808
VQ + +L TF L+ ++ S++ +A EIISVQ P+ + + P
Sbjct: 196 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ----VPKILSGKVKP 245
>pdb|1T5Z|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain (Lbd) With Dht And A Peptide Derived From Its
Physiological Coactivator Ara70
pdb|1T63|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived From Its
Physiological Coactivator Grip1 Nr Box3
pdb|1T65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived Form Its
Physiological Coactivator Grip1 Nr Box 2 Bound In A Non-
Helical Conformation
pdb|2PIO|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIP|L Chain L, Androgen Receptor Lbd With Small Molecule
pdb|2PIQ|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIR|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIT|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIU|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIV|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIW|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIX|A Chain A, Ar Lbd With Small Molecule
pdb|2PKL|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2QPY|A Chain A, Ar Lbd With Small Molecule
Length = 251
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 138 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 195
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNP 808
VQ + +L TF L+ ++ S++ +A EIISVQ P+ + + P
Sbjct: 196 DSVQ-PIARELHQFTFDLLIKSHMVSVDFPEMMA--EIISVQ----VPKILSGKVKP 245
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 525 NHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKL 584
N I D++ + P L +L+L NNK+ I+ + L L L Q++++ ++ L
Sbjct: 122 NGISDINGLV-HLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPLAGL 177
Query: 585 VSLQHLDLSHTRIKELPGELEILVNL--------KCLN--LNHTMYLSVIPRQL 628
LQ+L LS I +L L L NL +CLN +NH L V+P +
Sbjct: 178 TKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNL-VVPNTV 229
>pdb|2Q7K|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And An Ar 20-30
Peptide
pdb|2Q7L|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And A Tif2 Box3
Coactivator Peptide 740-753
Length = 257
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 699 CSQALFL------DGLKNSKWIDASQLAELKHLNRLRIRDCEELEELKVDLRQSCVFNSL 752
C +AL L DGLKN K+ D ++ +K L+ RI C+ R + L
Sbjct: 144 CMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD--RIIACKRKNPTSCSRRFYQLTKLL 201
Query: 753 QKVQISLCSKLKDLTF-LVFAPNVKSIEIRSCLAMEEIISVQKFADFPETVRNNLNP 808
VQ + +L TF L+ ++ S++ +A EIISVQ P+ + + P
Sbjct: 202 DSVQ-PIARELYQFTFDLLIKSHMVSVDFPEMMA--EIISVQ----VPKILSGKVKP 251
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 525 NHIEDLSNIYPRCPHLVTLFLNNNKLEVISSRFFHYMPSLKVLKLSHIQLTELPSRISKL 584
N I D++ + P L +L+L NNK+ I+ + L L L Q++++ ++ L
Sbjct: 117 NGISDINGLV-HLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LACL 172
Query: 585 VSLQHLDLSHTRIKELPGELEILVNLKCLNL 615
LQ+L LS I +L L L NL L L
Sbjct: 173 TKLQNLYLSKNHISDLRA-LCGLKNLDVLEL 202
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 497 FLVYAGAGLCKASTISGWVKIRRLSLMENHIE-DLSNIYPRCPHLVTLFLNNNKLEVISS 555
FL GL S + K+++L L EN I DL + +CP+L L L+ NK++ +S+
Sbjct: 51 FLSTINVGLTSISNLPKLNKLKKLELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLST 110
Query: 556 -RFFHYMPSLKVLKLSHIQLTEL 577
+ +LK L L + ++T L
Sbjct: 111 IEPLKKLENLKSLDLFNCEVTNL 133
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 547 NNKLEVISSRFFHYMPSLKVLKLSHIQ--LTELPSRISKLVSLQHLDLSHTRIKELP 601
N+ LEVI + F +P L +++ L P L +LQ+L +S+T IK LP
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,470,874
Number of Sequences: 62578
Number of extensions: 889993
Number of successful extensions: 2722
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 2537
Number of HSP's gapped (non-prelim): 240
length of query: 892
length of database: 14,973,337
effective HSP length: 107
effective length of query: 785
effective length of database: 8,277,491
effective search space: 6497830435
effective search space used: 6497830435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)