Query 002695
Match_columns 892
No_of_seqs 276 out of 451
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 21:26:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002695.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_86-89//hhsearch_pdb/002695hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_A Fibrinogen alpha chain; 1.0 1 1 30.9 9.9 101 41-190 55-155 (562)
2 1i84_S Smooth muscle myosin he 1.0 1 1 30.7 4.9 16 208-223 500-516 (1184)
3 2oez_A UPF0289 protein VP2528; 1.0 1 1 25.4 6.9 122 46-196 58-180 (247)
4 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 23.5 9.5 13 56-68 91-105 (1080)
5 3m3w_A Pacsin3, protein kinase 1.0 1 1 22.6 12.1 42 10-57 21-62 (320)
6 2wr1_A Hemagglutinin; glycopro 1.0 1 1 21.8 -1.7 34 850-890 473-506 (509)
7 4f23_A Hemagglutinin, H16; sia 1.0 1 1 20.6 -2.0 32 851-889 468-499 (515)
8 2js5_A Uncharacterized protein 1.0 1 1 20.2 3.0 23 46-68 6-28 (71)
9 3hhm_B NISH2 P85alpha; PI3KCA, 1.0 1 1 20.1 4.3 56 15-75 200-272 (373)
10 3aco_A Pacsin2, protein kinase 1.0 1 1 20.0 9.9 207 11-234 86-316 (350)
No 1
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=1.00 E-value=1 Score=30.91 Aligned_cols=101 Identities=13% Similarity=0.179 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 78889999999999988699998752152100001002467889999999999999979988520465342122588999
Q 002695 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120 (892)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~E~RK~IE~~MErFK~vEKesKtKafSkEGL~~~~k 120 (892)
=+|.|-||++-|.||...-|+ |..+|+-|+.-|+.- +-+ |.
T Consensus 55 LdkqErDltkrINELKnqLEd----------------------lsKnsKdseqy~k~~---------~E~----Lr---- 95 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFE----------------------YQKNNKDSHSLTTNI---------MEI----LR---- 95 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH----------------------HHHHHHHHHHHHHHH---------HHT----TS----
T ss_pred HHHHCCCHHHHHHHHHHHHHH----------------------HHHHCHHHHHHHHHH---------HHH----HH----
T ss_conf 876427189999999999999----------------------876010199999999---------999----99----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9915886799999999999999997877898874210012899960267889999987999999999998
Q 002695 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 190 (892)
Q Consensus 121 ~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~ri~~le~~ieRhk~Hi~kLE~iLR 190 (892)
.+.+...+...=++.+-++|+++|+-++.+|+..- .+|..|+..|+..+--|.|||.-+.
T Consensus 96 --~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl--------snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 96 --GDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV--------QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp --SHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --99876311102689987999999999999999999--------9999999999999999999999999
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=30.70 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=7.4
Q ss_pred HHHHHHHHCCC-CCCCC
Q ss_conf 79999982899-85555
Q 002695 208 LLEDYVERNQD-DFEEF 223 (892)
Q Consensus 208 dIeyYVe~Nqd-df~ef 223 (892)
.-+.|...+=+ .|.+|
T Consensus 500 eq~ey~~Egi~~~~i~~ 516 (1184)
T 1i84_S 500 EQEEYQREGIEWNFIDF 516 (1184)
T ss_dssp HHHHHHHHTCSCCCCCC
T ss_pred HHHHHHHCCCCCCCCCC
T ss_conf 99999964997501365
No 3
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=1.00 E-value=1 Score=25.39 Aligned_cols=122 Identities=17% Similarity=0.145 Sum_probs=80.2
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 999999-9999886999987521521000010024678899999999999999799885204653421225889999915
Q 002695 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPK 124 (892)
Q Consensus 46 ~DLKKE-IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~E~RK~IE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ 124 (892)
+|||-| ||-|.|.|-.++.|..+.+|-.. .|......|+..... |...+|..-
T Consensus 58 ~dlK~eLlKeLERq~~~L~~~~~~P~Vd~~--------~l~~~l~~l~~~~~~-----------------L~~~~r~Gq- 111 (247)
T 2oez_A 58 IQLKSELAKDLEKQRLSYRHWLNVEGVDQE--------ALNSLLNEIDVVHSQ-----------------LMGAERFGQ- 111 (247)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTTCTTSCHH--------HHHHHHHHHHHHHHH-----------------HHHCCSTTH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHHHHHH-----------------HHHCCCCCC-
T ss_conf 989999999999999999988469986799--------999999999999999-----------------973675530-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 886799999999999999997877898874210012899960267889999987999999999998552799
Q 002695 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (892)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~ri~~le~~ieRhk~Hi~kLE~iLRlLdNd~ 196 (892)
.-| --+||...=.-+.--=-.++-++=.+..=-......|..+++.|++-..--..-+.++||++-+..
T Consensus 112 -~Lr--ede~L~~iRQR~~iPGG~C~FDLP~yh~Wl~~p~~~R~~dl~~W~~~l~pl~~al~liL~LlR~s~ 180 (247)
T 2oez_A 112 -ALK--EDRFLSSIRQRFNLPGGSCCFDLPALHYWLHLPIERKKHDANQWQKSLKPLSDALTLWLKLARETG 180 (247)
T ss_dssp -HHH--HCHHHHHHHHHHHC----CGGGCHHHHHHHTSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC
T ss_pred -HHH--HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -335--708999988461599815786867889987799999999999999988999999999999998359
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=23.46 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=7.6
Q ss_pred HHH--HHHHHHHHCC
Q ss_conf 886--9999875215
Q 002695 56 QRY--RDQIKTWIQS 68 (892)
Q Consensus 56 QR~--RDQIKtW~~s 68 (892)
+|| +++|=||++.
T Consensus 91 ~Ry~~~~~iYTy~G~ 105 (1080)
T 2dfs_A 91 VRFIDSKLIYTYCGI 105 (1080)
T ss_dssp HHHHTTCCCEEEETT
T ss_pred HHHHHCCCCHHCCCC
T ss_conf 999855773102574
No 5
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=1.00 E-value=1 Score=22.59 Aligned_cols=42 Identities=12% Similarity=0.350 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 689986768986997898989762289803678889999999999988
Q 002695 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR 57 (892)
Q Consensus 10 EIDr~lKKV~EGie~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR 57 (892)
-+|.+++++..|+...+++-+=+ .+|-.+|-+--|.+.||-+
T Consensus 21 g~~~l~~~~~~g~~~~~el~~f~------keRa~iE~~Yak~L~kLak 62 (320)
T 3m3w_A 21 NYRRTVQRVEDGHRLCGDLVSCF------QERARIEKAYAQQLADWAR 62 (320)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_conf 68999999998899999999999------9999999999999999999
No 6
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A* 2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A* 3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Probab=1.00 E-value=1 Score=21.83 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=22.1
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCHHHHC
Q ss_conf 41579999767667531234522000356278320023220
Q 002695 850 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDEL 890 (892)
Q Consensus 850 yErGsY~yFDp~~~~~~~~~~W~qr~K~eFtleY~~LE~rl 890 (892)
.-.|.|.+|--. ++=|...-+|=|.+|...+++-
T Consensus 473 ~GnGCFe~~Hkc-------d~~cmesirNgTYd~~~y~eEs 506 (509)
T 2wr1_A 473 LGNGCFEFYHKC-------DDECMNSVKNGTYDYPKYEEES 506 (509)
T ss_dssp CSSSEEEESSCC-------CHHHHHHHHTTCCCHHHHHTTT
T ss_pred HCCCCEEEEECC-------CHHHHHHHHCCCCCCHHHHHHH
T ss_conf 478705453111-------6778888766887870555665
No 7
>4f23_A Hemagglutinin, H16; sialic acid, glycolysation, membrane, viral P; HET: NAG; 1.70A {Influenza a virus} PDB: 4fiu_A*
Probab=1.00 E-value=1 Score=20.65 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=21.5
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCHHHH
Q ss_conf 157999976766753123452200035627832002322
Q 002695 851 EQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 889 (892)
Q Consensus 851 ErGsY~yFDp~~~~~~~~~~W~qr~K~eFtleY~~LE~r 889 (892)
-.|.|.+|--. +.=|...-++=|++|....++
T Consensus 468 GnGCFe~~HKC-------d~~CmesirngTYd~~~y~ee 499 (515)
T 4f23_A 468 GDGCFSILHKC-------NDSCMETIRNGTYNHEDYKEE 499 (515)
T ss_dssp SSSEEEESSCC-------CHHHHHHHHTTCCCGGGGHHH
T ss_pred CCCEEEEECCC-------CHHHHHHHHCCCCCCHHHHHH
T ss_conf 67606653133-------778999987578673445456
No 8
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=1.00 E-value=1 Score=20.16 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999998869999875215
Q 002695 46 ADLKKEIKKLQRYRDQIKTWIQS 68 (892)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s 68 (892)
.+||||||||+|.--|.|.=+..
T Consensus 6 ~eLkkevkKL~~~A~q~kmdLHD 28 (71)
T 2js5_A 6 EELKAKLKKLNAQATALKMDLHD 28 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999983898
No 9
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=1.00 E-value=1 Score=20.14 Aligned_cols=56 Identities=27% Similarity=0.590 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 676898699789898976228980367888999999-----------------9999988699998752152100001
Q 002695 15 LKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKK-----------------EIKKLQRYRDQIKTWIQSSEIKDKK 75 (892)
Q Consensus 15 lKKV~EGie~Fd~i~eK~~~a~n~nQKEKlE~DLKK-----------------EIKKLQR~RDQIKtW~~s~eIKDK~ 75 (892)
..++.+-.+......+-+..+ |+|||.+|+. |+=-|.|.|||...|+....+++++
T Consensus 200 ~~~~~~n~~~l~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g~~~~~ 272 (373)
T 3hhm_B 200 IQRIMHNYDKLKSRISEIIDS-----RRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKK 272 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 888988699999999999999-----9999999999999999998876516927777788888999999875998788
No 10
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=19.96 Aligned_cols=207 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 89986768986997898989762289803678889999999999988----------69999875215210000100246
Q 002695 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR----------YRDQIKTWIQSSEIKDKKVSASY 80 (892)
Q Consensus 11 IDr~lKKV~EGie~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR----------~RDQIKtW~~s~eIKDK~~~~~~ 80 (892)
+..++..|-..++..-..+.++ -+.|..++-+.|+++++ +|+. |.....- -|--+
T Consensus 86 l~~aw~~l~~e~e~~a~~H~~l--------a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~-K~~~~~~-~k~~k----- 150 (350)
T 3aco_A 86 VEKAWMAFMSEAERVSELHLEV--------KASLMNDDFEKIKNWQKEAFHKQMMGGFKET-KEAEDGF-RKAQK----- 150 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHTHHHHHHHHHHTTSCBCTTSSBHHH-HHHHHHH-HHHTS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHH-----
T ss_conf 9999999999999999999999--------9999999999999999998888887666788-9999899-99999-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 788999999999999997998852046534212258899999158867------------99999999999999997877
Q 002695 81 EQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAK------------SETRDWLNNLVSELESQIDS 148 (892)
Q Consensus 81 ~~~L~E~RK~IE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek------------~E~~~wL~~~IdeL~~QiE~ 148 (892)
.+....+.++....+|-..-|+...-----+.........+++.+| .++..=....|..++.....
T Consensus 151 --~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~ 228 (350)
T 3aco_A 151 --PWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQ 228 (350)
T ss_dssp --HHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --999999999999999999999999999998610367668999999999999999999999999999999999987799
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCCC
Q ss_conf 89887421001289996026788999998799999999-99985527998935564445679999982899-85555778
Q 002695 149 FEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLE-LILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDV 226 (892)
Q Consensus 149 ~EaEiE~L~~KK~K~~~~ri~~le~~ieRhk~Hi~kLE-~iLRlLdNd~ldpe~V~~IKDdIeyYVe~Nqd-df~ef~dd 226 (892)
|+.++..+-..=-.-...|+..+...+-.+--|+.... ..+...-.+-...-.--+...||..|++++.. .+..-.+-
T Consensus 229 ~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~id~~~Di~~fi~~~~tg~~p~~~~F 308 (350)
T 3aco_A 229 YMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRANHGPGMAMNWPQF 308 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTSTTSCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999999999999999999999999998886203445899999999999967978999999998089999999871
Q ss_pred CCCCCCCC
Q ss_conf 54446899
Q 002695 227 DELYHLLP 234 (892)
Q Consensus 227 e~iYd~L~ 234 (892)
++.+.++.
T Consensus 309 e~y~~~~~ 316 (350)
T 3aco_A 309 EEWSADLN 316 (350)
T ss_dssp --------
T ss_pred CCCCCCHH
T ss_conf 01884244
Done!