Query 002696
Match_columns 891
No_of_seqs 305 out of 799
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2005 26S proteasome regulat 100.0 1E-239 2E-244 1975.3 66.8 851 24-889 26-878 (878)
2 COG5110 RPN1 26S proteasome re 100.0 3E-207 7E-212 1682.3 61.5 854 19-890 20-880 (881)
3 KOG2062 26S proteasome regulat 100.0 9E-137 2E-141 1159.4 47.8 730 48-837 6-771 (929)
4 COG5116 RPN2 26S proteasome re 100.0 1E-111 2E-116 931.3 38.9 718 49-826 7-757 (926)
5 KOG2062 26S proteasome regulat 100.0 4.3E-54 9.3E-59 488.0 32.0 545 151-788 30-659 (929)
6 COG5116 RPN2 26S proteasome re 100.0 6.9E-50 1.5E-54 442.3 26.1 546 150-786 29-654 (926)
7 KOG2005 26S proteasome regulat 100.0 1.1E-38 2.5E-43 359.2 25.8 475 175-718 236-744 (878)
8 COG5110 RPN1 26S proteasome re 100.0 4.6E-33 1E-37 308.1 30.2 555 84-718 145-745 (881)
9 KOG1858 Anaphase-promoting com 100.0 2.1E-30 4.6E-35 314.9 20.9 426 405-855 814-1331(1496)
10 PRK09687 putative lyase; Provi 99.2 2.8E-09 6.1E-14 116.7 26.0 246 430-710 25-277 (280)
11 KOG1858 Anaphase-promoting com 99.2 3.5E-10 7.6E-15 140.2 17.1 173 399-575 839-1060(1496)
12 PRK09687 putative lyase; Provi 99.1 9.3E-09 2E-13 112.6 24.4 243 466-746 24-276 (280)
13 PRK13800 putative oxidoreducta 99.1 3.4E-08 7.4E-13 124.2 29.3 289 407-748 607-895 (897)
14 PRK13800 putative oxidoreducta 98.8 6.2E-07 1.3E-11 113.0 24.2 264 403-711 630-895 (897)
15 COG1413 FOG: HEAT repeat [Ener 98.2 0.00041 8.9E-09 77.6 24.8 214 467-711 45-269 (335)
16 TIGR02270 conserved hypothetic 98.1 0.00027 5.8E-09 81.6 21.5 221 449-714 45-266 (410)
17 TIGR02270 conserved hypothetic 98.1 0.00047 1E-08 79.6 22.6 221 486-750 45-265 (410)
18 KOG2171 Karyopherin (importin) 98.0 0.08 1.7E-06 66.5 40.5 119 428-548 348-477 (1075)
19 PF01851 PC_rep: Proteasome/cy 97.7 3.2E-05 6.9E-10 58.1 3.5 30 484-513 1-30 (35)
20 PF01851 PC_rep: Proteasome/cy 97.7 5.9E-05 1.3E-09 56.7 4.2 35 670-704 1-35 (35)
21 COG1413 FOG: HEAT repeat [Ener 97.6 0.022 4.7E-07 63.8 26.4 264 428-726 43-313 (335)
22 PF13646 HEAT_2: HEAT repeats; 97.6 0.00022 4.7E-09 63.5 8.2 86 614-711 2-88 (88)
23 KOG0567 HEAT repeat-containing 97.6 0.0057 1.2E-07 65.5 19.8 62 650-715 218-280 (289)
24 PF13646 HEAT_2: HEAT repeats; 97.5 0.00068 1.5E-08 60.3 9.6 87 653-748 2-88 (88)
25 PLN03200 cellulose synthase-in 96.9 0.35 7.7E-06 65.3 28.8 280 427-718 403-726 (2102)
26 KOG0166 Karyopherin (importin) 96.9 0.1 2.2E-06 61.4 21.3 243 468-721 112-399 (514)
27 PF01602 Adaptin_N: Adaptin N 96.8 0.094 2E-06 62.1 20.7 291 411-715 59-369 (526)
28 PF01602 Adaptin_N: Adaptin N 96.7 0.097 2.1E-06 62.0 20.5 288 425-733 39-348 (526)
29 PTZ00429 beta-adaptin; Provisi 96.7 0.55 1.2E-05 58.5 27.1 272 430-716 107-398 (746)
30 PLN03200 cellulose synthase-in 96.5 0.55 1.2E-05 63.5 26.5 270 406-688 458-772 (2102)
31 TIGR02917 PEP_TPR_lipo putativ 96.5 3.7 8E-05 50.6 40.1 254 420-699 611-869 (899)
32 TIGR02917 PEP_TPR_lipo putativ 96.4 3.8 8.3E-05 50.5 44.3 304 421-754 578-886 (899)
33 PRK11788 tetratricopeptide rep 96.0 3.6 7.9E-05 46.4 27.5 281 421-718 46-332 (389)
34 KOG0567 HEAT repeat-containing 96.0 0.47 1E-05 51.4 17.9 238 467-751 38-279 (289)
35 PF12755 Vac14_Fab1_bd: Vacuol 95.6 0.033 7.2E-07 51.6 6.7 79 630-708 2-90 (97)
36 KOG2171 Karyopherin (importin) 95.5 1.8 4E-05 54.9 23.2 85 629-714 324-417 (1075)
37 PF13513 HEAT_EZ: HEAT-like re 95.5 0.03 6.4E-07 45.8 5.3 48 665-712 1-54 (55)
38 PTZ00429 beta-adaptin; Provisi 95.3 12 0.00025 47.1 35.3 333 408-753 119-547 (746)
39 PRK10049 pgaA outer membrane p 94.4 18 0.00039 45.6 28.4 178 568-757 247-443 (765)
40 KOG1824 TATA-binding protein-i 94.1 1.4 3.1E-05 54.7 16.5 263 468-787 821-1100(1233)
41 PRK11788 tetratricopeptide rep 93.9 14 0.0003 41.7 28.3 262 449-729 40-308 (389)
42 smart00638 LPD_N Lipoprotein N 93.7 5 0.00011 48.6 20.8 204 531-746 320-539 (574)
43 COG5064 SRP1 Karyopherin (impo 93.5 3.5 7.5E-05 46.2 16.7 243 471-723 120-407 (526)
44 KOG1078 Vesicle coat complex C 93.1 5.2 0.00011 49.1 18.8 273 430-714 247-531 (865)
45 KOG2023 Nuclear transport rece 92.7 5.5 0.00012 48.2 17.8 315 408-757 368-737 (885)
46 cd00020 ARM Armadillo/beta-cat 91.9 1 2.2E-05 41.4 9.0 85 629-713 22-118 (120)
47 smart00638 LPD_N Lipoprotein N 90.7 5.6 0.00012 48.2 16.1 197 573-781 324-541 (574)
48 KOG0166 Karyopherin (importin) 90.1 1.5 3.3E-05 51.8 10.1 170 577-757 111-313 (514)
49 PRK15174 Vi polysaccharide exp 90.0 59 0.0013 40.3 28.3 269 406-700 72-351 (656)
50 COG5096 Vesicle coat complex, 89.8 1.3 2.8E-05 54.8 9.4 87 628-716 106-196 (757)
51 PF05004 IFRD: Interferon-rela 89.8 4.8 0.0001 45.1 13.4 51 629-679 201-256 (309)
52 PF01347 Vitellogenin_N: Lipop 89.4 5 0.00011 48.9 14.3 210 324-564 346-581 (618)
53 KOG1824 TATA-binding protein-i 89.3 12 0.00026 47.1 16.7 244 440-698 621-904 (1233)
54 COG5064 SRP1 Karyopherin (impo 89.2 29 0.00063 39.2 18.2 250 439-719 126-428 (526)
55 PF01347 Vitellogenin_N: Lipop 89.2 14 0.00029 45.2 17.9 203 531-744 356-581 (618)
56 PRK12370 invasion protein regu 89.1 44 0.00096 40.4 21.9 208 500-731 322-534 (553)
57 cd05804 StaR_like StaR_like; a 88.8 43 0.00093 37.2 23.3 164 413-585 46-213 (355)
58 COG5240 SEC21 Vesicle coat com 88.0 51 0.0011 39.7 20.0 162 449-622 208-382 (898)
59 KOG1060 Vesicle coat complex A 87.4 78 0.0017 39.6 21.6 96 430-529 110-207 (968)
60 KOG0213 Splicing factor 3b, su 87.1 90 0.0019 38.9 39.8 99 615-718 929-1027(1172)
61 PF12348 CLASP_N: CLASP N term 87.0 8.4 0.00018 40.5 12.5 66 652-717 132-208 (228)
62 KOG2259 Uncharacterized conser 86.9 19 0.0004 43.9 16.0 101 434-539 204-316 (823)
63 KOG4224 Armadillo repeat prote 86.3 13 0.00027 42.4 13.4 86 443-530 185-279 (550)
64 PRK10049 pgaA outer membrane p 86.0 1.1E+02 0.0023 38.8 28.1 167 564-739 278-463 (765)
65 COG5096 Vesicle coat complex, 85.3 4.3 9.4E-05 50.3 10.3 57 658-714 99-155 (757)
66 PF02985 HEAT: HEAT repeat; I 85.1 1.4 3E-05 31.9 3.8 26 688-713 2-27 (31)
67 PRK12370 invasion protein regu 83.7 1.1E+02 0.0024 37.0 22.0 254 426-702 277-540 (553)
68 cd00020 ARM Armadillo/beta-cat 83.5 2.7 5.9E-05 38.5 6.1 66 652-718 9-81 (120)
69 PF13513 HEAT_EZ: HEAT-like re 82.3 2.6 5.5E-05 34.2 4.7 49 629-677 2-54 (55)
70 KOG1517 Guanine nucleotide bin 81.6 3 6.6E-05 52.5 6.9 88 629-716 572-672 (1387)
71 PF12717 Cnd1: non-SMC mitotic 81.6 11 0.00023 38.6 10.1 88 629-716 3-93 (178)
72 PRK15174 Vi polysaccharide exp 81.4 1.5E+02 0.0032 36.8 28.3 263 419-701 51-318 (656)
73 KOG0211 Protein phosphatase 2A 81.2 17 0.00036 45.7 13.1 102 611-715 557-664 (759)
74 COG3118 Thioredoxin domain-con 80.5 1E+02 0.0022 34.4 17.6 184 530-732 113-302 (304)
75 PRK11447 cellulose synthase su 80.3 2.1E+02 0.0046 38.0 43.9 287 417-732 390-700 (1157)
76 KOG1061 Vesicle coat complex A 78.5 1.2E+02 0.0026 37.8 18.7 256 438-716 96-380 (734)
77 COG5240 SEC21 Vesicle coat com 77.8 99 0.0021 37.4 17.0 255 463-735 301-584 (898)
78 PF03130 HEAT_PBS: PBS lyase H 75.9 2.9 6.3E-05 29.4 2.7 27 667-697 1-27 (27)
79 PF04826 Arm_2: Armadillo-like 71.3 30 0.00065 37.8 10.5 64 650-713 12-81 (254)
80 smart00567 EZ_HEAT E-Z type HE 70.1 6.4 0.00014 28.0 3.4 29 666-698 2-30 (30)
81 smart00299 CLH Clathrin heavy 69.3 38 0.00081 32.7 9.8 48 241-288 84-132 (140)
82 KOG0915 Uncharacterized conser 69.1 4E+02 0.0086 36.2 20.6 180 410-595 973-1192(1702)
83 PF05004 IFRD: Interferon-rela 68.9 19 0.0004 40.5 8.5 76 44-127 41-119 (309)
84 PRK09782 bacteriophage N4 rece 68.6 3.7E+02 0.0081 35.2 22.8 234 446-700 477-710 (987)
85 KOG2025 Chromosome condensatio 68.5 2.2E+02 0.0049 35.4 17.3 101 536-640 80-190 (892)
86 PF02985 HEAT: HEAT repeat; I 68.4 7 0.00015 28.2 3.3 24 655-678 4-27 (31)
87 TIGR02521 type_IV_pilW type IV 68.1 1.3E+02 0.0029 29.9 19.3 53 565-617 106-158 (234)
88 KOG1943 Beta-tubulin folding c 67.3 3.9E+02 0.0084 34.9 20.0 98 433-530 346-459 (1133)
89 PF12717 Cnd1: non-SMC mitotic 67.3 59 0.0013 33.2 11.2 90 441-532 1-93 (178)
90 KOG4224 Armadillo repeat prote 67.2 14 0.0003 42.0 6.8 64 656-719 213-284 (550)
91 PF10508 Proteasom_PSMB: Prote 67.2 2.8E+02 0.0061 33.3 26.8 83 658-740 297-394 (503)
92 KOG1061 Vesicle coat complex A 64.7 26 0.00056 43.3 8.9 88 629-718 101-192 (734)
93 cd06561 AlkD_like A new struct 63.4 1.1E+02 0.0023 31.3 12.3 77 654-731 108-185 (197)
94 KOG1062 Vesicle coat complex A 61.8 4.3E+02 0.0093 33.5 20.2 78 429-510 314-395 (866)
95 COG5181 HSH155 U2 snRNP splice 60.9 1E+02 0.0023 37.6 12.6 136 615-757 734-878 (975)
96 KOG0212 Uncharacterized conser 60.9 45 0.00098 40.1 9.6 134 604-743 31-187 (675)
97 PF04053 Coatomer_WDAD: Coatom 60.5 51 0.0011 39.0 10.3 50 240-293 390-439 (443)
98 PF08713 DNA_alkylation: DNA a 60.1 36 0.00079 35.3 8.2 76 651-728 120-196 (213)
99 KOG0915 Uncharacterized conser 59.6 2.4E+02 0.0052 38.0 16.3 236 430-706 820-1101(1702)
100 KOG4653 Uncharacterized conser 58.9 2.5E+02 0.0054 35.8 15.7 167 435-609 734-922 (982)
101 KOG2025 Chromosome condensatio 56.4 70 0.0015 39.5 10.4 48 661-708 136-186 (892)
102 KOG0985 Vesicle coat protein c 53.7 55 0.0012 41.9 9.1 139 142-289 949-1112(1666)
103 PF12755 Vac14_Fab1_bd: Vacuol 53.4 40 0.00087 31.3 6.3 79 667-745 2-90 (97)
104 KOG1240 Protein kinase contain 53.0 7E+02 0.015 33.3 24.2 50 244-293 227-277 (1431)
105 KOG1059 Vesicle coat complex A 52.4 4.9E+02 0.011 32.7 16.4 200 43-266 178-422 (877)
106 KOG2023 Nuclear transport rece 51.9 20 0.00043 43.7 5.0 97 408-509 406-515 (885)
107 KOG1240 Protein kinase contain 51.4 69 0.0015 41.8 9.7 133 433-571 583-724 (1431)
108 PF12460 MMS19_C: RNAPII trans 51.3 2.4E+02 0.0053 32.8 13.9 89 629-720 250-357 (415)
109 COG5181 HSH155 U2 snRNP splice 49.8 5.9E+02 0.013 31.5 39.4 269 415-704 591-901 (975)
110 COG5098 Chromosome condensatio 46.7 36 0.00079 41.7 6.0 90 628-717 910-1003(1128)
111 PF04762 IKI3: IKI3 family; I 46.6 2.3E+02 0.0051 36.8 13.7 52 178-230 694-760 (928)
112 PF13429 TPR_15: Tetratricopep 46.2 96 0.0021 33.5 9.0 137 572-719 124-263 (280)
113 PF04053 Coatomer_WDAD: Coatom 44.1 1.7E+02 0.0038 34.6 11.2 107 180-292 297-416 (443)
114 PF04840 Vps16_C: Vps16, C-ter 42.9 5.4E+02 0.012 29.1 18.1 95 181-279 180-302 (319)
115 PF09384 UTP15_C: UTP15 C term 42.3 1.4E+02 0.003 29.9 8.6 81 183-278 23-124 (148)
116 PF11768 DUF3312: Protein of u 41.7 1.5E+02 0.0032 35.9 9.9 94 184-277 414-532 (545)
117 COG2956 Predicted N-acetylgluc 41.6 6E+02 0.013 29.2 14.9 195 497-737 50-245 (389)
118 PF10363 DUF2435: Protein of u 41.6 1.7E+02 0.0036 27.0 8.4 81 430-511 5-88 (92)
119 PF10363 DUF2435: Protein of u 40.6 1.4E+02 0.0029 27.6 7.6 44 685-728 42-85 (92)
120 KOG2076 RNA polymerase III tra 40.5 9.2E+02 0.02 31.1 18.7 223 33-278 131-403 (895)
121 KOG0211 Protein phosphatase 2A 40.1 1.1E+02 0.0023 38.7 9.0 102 650-752 557-664 (759)
122 PF09976 TPR_21: Tetratricopep 39.6 3.6E+02 0.0078 26.1 13.4 92 518-615 46-139 (145)
123 KOG1125 TPR repeat-containing 39.4 41 0.00089 40.4 5.0 142 59-206 365-526 (579)
124 PF12719 Cnd3: Nuclear condens 38.4 3.6E+02 0.0077 29.9 12.1 86 629-714 42-142 (298)
125 KOG0414 Chromosome condensatio 38.0 48 0.0011 42.9 5.5 88 628-715 937-1027(1251)
126 TIGR00990 3a0801s09 mitochondr 37.8 8.4E+02 0.018 29.8 27.0 182 424-619 308-492 (615)
127 PF12711 Kinesin-relat_1: Kine 37.6 1.7E+02 0.0037 26.8 7.6 63 35-121 20-82 (86)
128 KOG3617 WD40 and TPR repeat-co 36.1 1.5E+02 0.0032 37.6 8.8 99 179-277 1081-1184(1416)
129 KOG1822 Uncharacterized conser 35.9 1.3E+03 0.027 32.5 17.6 68 575-644 915-989 (2067)
130 COG5218 YCG1 Chromosome conden 35.6 6.5E+02 0.014 31.0 13.7 154 537-694 87-280 (885)
131 KOG2114 Vacuolar assembly/sort 34.6 7.6E+02 0.016 31.7 14.6 93 172-279 362-458 (933)
132 KOG1078 Vesicle coat complex C 33.8 1.1E+03 0.024 30.0 17.5 266 433-713 105-384 (865)
133 PF06957 COPI_C: Coatomer (COP 33.6 49 0.0011 38.8 4.4 88 198-290 260-359 (422)
134 TIGR03302 OM_YfiO outer membra 33.5 5.6E+02 0.012 26.5 15.8 27 522-548 72-98 (235)
135 PF12348 CLASP_N: CLASP N term 33.3 4.4E+02 0.0095 27.4 11.4 91 661-751 104-205 (228)
136 KOG2973 Uncharacterized conser 32.7 61 0.0013 36.4 4.7 78 35-121 231-313 (353)
137 PF11698 V-ATPase_H_C: V-ATPas 31.8 94 0.002 30.2 5.3 29 687-715 87-115 (119)
138 KOG1058 Vesicle coat complex C 30.9 1.2E+03 0.026 29.6 19.1 72 433-509 104-180 (948)
139 KOG2280 Vacuolar assembly/sort 30.5 4.3E+02 0.0093 33.3 11.5 99 173-293 489-587 (829)
140 PF04826 Arm_2: Armadillo-like 30.0 2.4E+02 0.0052 30.9 8.8 76 612-689 13-92 (254)
141 KOG1062 Vesicle coat complex A 29.7 1.3E+03 0.028 29.5 20.1 98 650-753 312-413 (866)
142 KOG0292 Vesicle coat complex C 29.7 1.7E+02 0.0036 37.3 8.0 86 198-291 1047-1144(1202)
143 KOG1820 Microtubule-associated 29.6 7.5E+02 0.016 31.8 13.9 78 654-731 374-459 (815)
144 PLN03218 maturation of RBCL 1; 29.5 1.5E+03 0.032 30.2 29.1 16 422-437 449-464 (1060)
145 PF13170 DUF4003: Protein of u 29.2 8.5E+02 0.018 27.3 14.5 188 62-276 33-241 (297)
146 TIGR03302 OM_YfiO outer membra 28.3 6.8E+02 0.015 25.9 15.7 59 674-732 171-232 (235)
147 KOG1077 Vesicle coat complex A 28.1 1.3E+03 0.029 29.1 23.1 94 637-731 315-415 (938)
148 TIGR02795 tol_pal_ybgF tol-pal 28.0 2.5E+02 0.0053 25.2 7.4 83 650-732 19-105 (119)
149 cd06561 AlkD_like A new struct 27.9 1.6E+02 0.0034 30.0 6.7 66 629-697 120-186 (197)
150 smart00185 ARM Armadillo/beta- 27.6 93 0.002 22.8 3.7 27 48-74 14-40 (41)
151 TIGR02521 type_IV_pilW type IV 27.3 6.1E+02 0.013 25.0 19.4 162 446-619 31-194 (234)
152 PF12725 DUF3810: Protein of u 27.3 25 0.00055 39.6 0.7 84 111-195 212-303 (318)
153 KOG1517 Guanine nucleotide bin 26.0 2E+02 0.0042 37.5 7.8 102 616-718 600-735 (1387)
154 KOG1059 Vesicle coat complex A 25.0 1.5E+03 0.033 28.7 23.9 81 611-695 299-380 (877)
155 KOG2259 Uncharacterized conser 24.6 3.8E+02 0.0082 33.3 9.5 85 443-529 388-473 (823)
156 KOG2032 Uncharacterized conser 24.1 3.9E+02 0.0085 32.0 9.4 86 629-714 273-370 (533)
157 PF09295 ChAPs: ChAPs (Chs5p-A 23.7 5E+02 0.011 30.4 10.3 40 158-203 186-225 (395)
158 KOG0414 Chromosome condensatio 23.3 4.3E+02 0.0094 34.9 10.2 113 588-704 935-1053(1251)
159 PF08625 Utp13: Utp13 specific 23.3 76 0.0017 31.6 3.2 31 248-278 6-36 (141)
160 PF00514 Arm: Armadillo/beta-c 23.1 1.4E+02 0.0031 22.5 4.0 27 48-74 14-40 (41)
161 PF13934 ELYS: Nuclear pore co 22.7 3.2E+02 0.0069 29.3 8.0 89 186-278 86-182 (226)
162 PF05918 API5: Apoptosis inhib 22.7 1.9E+02 0.0042 35.2 6.9 95 610-707 58-154 (556)
163 KOG1943 Beta-tubulin folding c 22.4 9.5E+02 0.021 31.6 12.8 141 611-757 341-505 (1133)
164 PF09551 Spore_II_R: Stage II 22.0 1.1E+02 0.0025 30.0 4.0 49 37-103 14-62 (130)
165 KOG0213 Splicing factor 3b, su 21.9 1.7E+03 0.038 28.4 23.9 136 407-547 938-1084(1172)
166 PHA03033 hypothetical protein; 21.5 42 0.00091 32.6 0.9 52 45-102 77-139 (142)
167 PF13429 TPR_15: Tetratricopep 21.5 1E+03 0.022 25.5 12.1 130 532-672 122-255 (280)
168 PF14668 RICTOR_V: Rapamycin-i 20.9 1.4E+02 0.0031 26.4 4.0 52 601-655 10-69 (73)
169 KOG4653 Uncharacterized conser 20.7 1E+03 0.022 30.7 12.3 180 429-638 769-959 (982)
170 PF12719 Cnd3: Nuclear condens 20.5 7.1E+02 0.015 27.5 10.5 121 45-167 63-186 (298)
171 PF12688 TPR_5: Tetratrico pep 20.3 7.8E+02 0.017 23.7 10.6 81 566-646 9-91 (120)
172 KOG1020 Sister chromatid cohes 20.0 9.7E+02 0.021 32.8 12.4 36 683-718 1222-1257(1692)
No 1
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-239 Score=1975.35 Aligned_cols=851 Identities=65% Similarity=1.019 Sum_probs=823.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHh
Q 002696 24 KDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYE 103 (891)
Q Consensus 24 ~~~~~~~~~~~~~lseed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye 103 (891)
++.++|+++|+|+|||||+|||++||++|+|++|+|++|+++||++|+++||+|||||||||||||||||||++|+++|+
T Consensus 26 k~~~~k~~~k~e~lSEED~~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~ 105 (878)
T KOG2005|consen 26 KKNKKKDKDKEEDLSEEDLQLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYE 105 (878)
T ss_pred cccccccchhhhhccHHHHHhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHH
Confidence 33445666677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHhhhccCcccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002696 104 TMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQE 183 (891)
Q Consensus 104 ~~~~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wghEYvr~l~~ei~~~y~~~~~~~~~~~~L~~lv~~ 183 (891)
+|.+++.|+++|||+|||+|||+ +..+.|+|||.|+..|+++|||||||||++||.++|+++....+.+++|..|+.+
T Consensus 106 ~~~~~n~Kk~laDIlSvLamt~s--e~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~ 183 (878)
T KOG2005|consen 106 SMADSNLKKWLADILSVLAMTMS--ERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQE 183 (878)
T ss_pred hccCchhHhHHHHHHHHHheeec--ccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence 99999999999999999999998 4457799999999999999999999999999999999965555668999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccChHHHHHHHHhhcccCCCCChHHHHHHHHHHHHccCCHHHHHHHHH
Q 002696 184 IVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIAL 263 (891)
Q Consensus 184 iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~~~~~~~~al~~al 263 (891)
||+||||||+|.||||+++|+++||++.+|||++||+|+|+|+.+|++|+|+|+|..++++++.||+|+++|++|+++||
T Consensus 184 iV~f~mkHNAE~eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai 263 (878)
T KOG2005|consen 184 IVPFHMKHNAEFEAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAI 263 (878)
T ss_pred HHHHHHhccchhHHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHhcchhHHHHHHHHHHHhhcccccccCCCCCCcccHHHHHHHHcccCcchhHHHHHHHhhccCCCChH
Q 002696 264 FLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPE 343 (891)
Q Consensus 264 ~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~~e 343 (891)
+++|.+.|+++|.+|+|+.++||+||+||||++.+++.+ ++++++|++|.+++++|+++++|+++++||+||
T Consensus 264 ~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~--------~e~l~di~sN~~Lse~f~~LarELeimepk~pe 335 (878)
T KOG2005|consen 264 RLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSE--------DEELQDILSNGKLSEHFLYLARELEIMEPKVPE 335 (878)
T ss_pred hcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCc--------CHHHHHHHccccHHHHHHHHHHHhcccCCCChH
Confidence 999999999999999999999999999999999998743 378999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCcccchHHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccchhhHHHHHHHhccccc
Q 002696 344 DIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILL 423 (891)
Q Consensus 344 ~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~sA~aslGlI~~ 423 (891)
+|||+|++++|...+.++||||||+|++|||||||+|||+||+|.++.+ +..+|+|||+++++.+|+||+|+|.+
T Consensus 336 dIyK~hl~~~r~~s~a~vdSarqnla~~fvNgFVn~Gyg~Dkl~~~~~~-----s~~~w~yknke~g~~sa~aS~G~I~~ 410 (878)
T KOG2005|consen 336 DIYKSHLEDSRGGSGAGVDSARQNLAATFVNGFVNAGYGQDKLMLVQEG-----SRVNWLYKNKEHGMTSAAASLGMIQL 410 (878)
T ss_pred HHHHHHHhccccccccCccHHHHHHHHHHHHHHhhcccCCCceeccCcc-----ccCcceeeccccCchHhhhhcchhhe
Confidence 9999999988866678999999999999999999999999999998763 46679999999999999999999999
Q ss_pred ccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHH
Q 002696 424 WDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRH 503 (891)
Q Consensus 424 ~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~~v~e 503 (891)
||+|.|++++++|++++++|+|+|||+|+|++++|+++||||++++|++|+.+++..+|+||++|||++|+||++++|..
T Consensus 411 Wnvd~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~ 490 (878)
T KOG2005|consen 411 WNVDKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLE 490 (878)
T ss_pred ecchhhHHHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHH
Q 002696 504 KLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEV 583 (891)
Q Consensus 504 ~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~ 583 (891)
.|.|++.|++.++|+.++|+|+||+||+||||++++..|++++|+++++++.+.|.||+++|+|++|+|++|.+|++.+.
T Consensus 491 lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~ 570 (878)
T KOG2005|consen 491 LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVET 570 (878)
T ss_pred HHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 99999999888999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HhhchhhhhhhhhHHHHHHHHhcCCCHHHH--HHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhh
Q 002696 584 SKTFNEKIRKYCDMTLLSCAYAGTGNVLKV--QNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ 661 (891)
Q Consensus 584 L~~~~~~i~r~~~~~~~glAyaGTGn~~~i--q~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~ 661 (891)
++.+++|+.++..+++.+|||+||||+.+| |.++|+|.++..+.+..+..||+|+|+|+||+++|++|+.|+|+|+++
T Consensus 571 ~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~ 650 (878)
T KOG2005|consen 571 IKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLH 650 (878)
T ss_pred HHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999 889999999987655667799999999999999999999999999999
Q ss_pred cCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHH
Q 002696 662 YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLF 741 (891)
Q Consensus 662 ~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~Lr~l~~~~~~d~~~~f 741 (891)
|++|+||+++|+|||++|+|||+.+++|+|++++||.|.+|..+||||||+|||||||+|++++||||+|||+||++++|
T Consensus 651 yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~Lf 730 (878)
T KOG2005|consen 651 YGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKALF 730 (878)
T ss_pred cCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHHHHhccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCchhHHHHHHhhhcccceeeeecCCCCcc
Q 002696 742 CVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPL 821 (891)
Q Consensus 742 ~~~iAqGll~~G~G~~tlsp~~sd~~~~~~~a~agLl~~l~~~~~~~~~i~~~~h~l~~~l~lA~~Pr~li~ld~~l~~~ 821 (891)
.+||||||+|+|||++|++|+|+||++++|+|+|||++++++++|++.+++.++||++|||++||+|||++|+|++++|+
T Consensus 731 ~vriAQGL~hlGKGtltl~p~~~dr~ll~p~alagl~t~~~~~LD~~i~l~~~~H~~ly~Lv~amqprm~~T~~e~~~pl 810 (878)
T KOG2005|consen 731 VVRIAQGLVHLGKGTLTLSPFHSDRQLLMPTALAGLLTTVFALLDANIILLVKSHYLLYFLVLAMQPRMLVTVDEELEPL 810 (878)
T ss_pred HHHHHHHHHHhcCCceecccccchhhhhchHHHHHHHHHHHHHhccchhccchHHHHHHHHHHhhCceEEEeecccCccc
Confidence 99999999999999999999999999999999999999999999999666668999999999999999999999999999
Q ss_pred eeeeeecccccccccCCCcceeeceeeeecceeccCCCceeeccCCccccCCcccceEEeecCCCCCC
Q 002696 822 SVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYRE 889 (891)
Q Consensus 822 ~v~vrvg~~vd~vg~ag~pk~itg~qt~~tpvll~~~erael~~~~~~~~~~~leg~vi~~~n~~~~~ 889 (891)
+|+|||||||||||||||||||||||||||||||.+||||||+||+|+|+||.|||||||||||||.+
T Consensus 811 ~V~VRVGqaVdvVGqaGrPKtITg~qTHtTPVlLahgeRAElatd~y~p~t~~lEg~vILkkNp~y~~ 878 (878)
T KOG2005|consen 811 PVNVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLAHGERAELATDEYLPLTSHLEGVVILKKNPDYIE 878 (878)
T ss_pred cceeeccchhhhhhccCCCceecceeccCcceecccchhhhhccccccccccccceEEEEecCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999974
No 2
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-207 Score=1682.31 Aligned_cols=854 Identities=42% Similarity=0.694 Sum_probs=823.6
Q ss_pred CCCCCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHH
Q 002696 19 VKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTL 98 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~lseed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l 98 (891)
|.+...++|.|+++++|.|||||.++|.+||++|+|++|+|++|+..+|.+|++.||+||||||.||||||||||||..+
T Consensus 20 ~e~~~~n~~~k~kee~e~lseed~~lk~dLellVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl 99 (881)
T COG5110 20 PEKQTPNKKDKKKEEEEQLSEEDAMLKGDLELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDL 99 (881)
T ss_pred cccCCCCccchhhhhHhhhchhhhhhcccHHHHHHHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchH
Confidence 55544555555666678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHhhhccCcccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhccCCCC-HHHH
Q 002696 99 KAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEAS-IDDL 177 (891)
Q Consensus 99 ~~~ye~~~~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wghEYvr~l~~ei~~~y~~~~~~~~~-~~~L 177 (891)
.++|++|+.+..|+++|||+|+++|+|+..+++++|+|||+|+..|+..|||||||||++||+++|+.+.+.+.+ .+++
T Consensus 100 ~~iydkw~~~n~K~~LaDilS~l~m~yse~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt 179 (881)
T COG5110 100 LEIYDKWLEGNKKRWLADILSALCMVYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADT 179 (881)
T ss_pred HHHHhhccCcchhhHHHHHHHHHeeecccccchhhHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887766 6899
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccChHHHHHHHHhhcccCCCCChHHHHHHHHHHHHccCCHHH
Q 002696 178 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPN 257 (891)
Q Consensus 178 ~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~~~~~~~~ 257 (891)
.++-..||||+++||+|.+|||+++|++.||++.+|||.+||.|+|+|+.+|++.+|+|++..++++++.||+|++++.+
T Consensus 180 ~~l~l~ivpfflkHNaE~dAiDlL~Evg~Iekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~ 259 (881)
T COG5110 180 RDLGLEIVPFFLKHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTR 259 (881)
T ss_pred HHHHHHHhHHHHhcccchHHHHHHHHhcchhhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHhcchhHHHHHHHHHHHhhcccccccCCCCCCcccHHHHHHHHcccCcchhHHHHHHHhhcc
Q 002696 258 ALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVM 337 (891)
Q Consensus 258 al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~ 337 (891)
|+..|||+++.+.+++.+++.+||.++||++|+||||++.++..+ ++++.||+|.+++++|++++|++|++
T Consensus 260 av~~aiRl~~~~~i~e~~~a~~Dp~~kKQ~~YiLArq~~~~e~~d---------ee~~dil~Ng~lsdhf~ylgkELnl~ 330 (881)
T COG5110 260 AVVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILARQNLYYEASD---------EEEKDILSNGYLSDHFRYLGKELNLD 330 (881)
T ss_pred HHHHHHhcccHHHHHHHHHhccChHHHHHHHHHHHhccCCcccCC---------HHHHHHhcCCcHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999998754 68999999999999999999999999
Q ss_pred CCCChHHHHHhhhccCCCCc-ccchHHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccchhhHHHHHH
Q 002696 338 EPKSPEDIYKAHLLDGRASA-GASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAA 416 (891)
Q Consensus 338 ~~k~~e~iyK~~l~~~r~~~-~~~~dsa~~~la~~~~na~vnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~sA~a 416 (891)
+||.||+|||+|++..|.+. .++++||.+|+|.+|+|+++|+|+.+|+++-.+. +|+||++..++.+|++
T Consensus 331 ~PkvpedI~K~hl~~~k~~~~~agi~sA~qnla~~fvn~~inlgy~nD~li~~dd---------~wiyk~k~~gliSa~a 401 (881)
T COG5110 331 KPKVPEDILKGHLKYDKDTRQLAGIGSANQNLAMGFVNDPINLGYENDSLIPLDD---------EWIYKCKVPGLISAFA 401 (881)
T ss_pred CCCChHHHHHhhhhccccchhhcccchhhhHHHHhhhccccccCccCCeeeecch---------hhhhcCCCCChhheee
Confidence 99999999999998666543 5789999999999999999999999999987654 4999999999999999
Q ss_pred HhcccccccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccC
Q 002696 417 SLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGT 496 (891)
Q Consensus 417 slGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs 496 (891)
|+|+|..||.|.|++.|++|||.+.+|.|+||++|+|+...++++|.+|++++|++||.+++...+.+|+||||++|.|+
T Consensus 402 SIG~i~~WN~d~gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt 481 (881)
T COG5110 402 SIGVIESWNSDKGLETLDKYLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGT 481 (881)
T ss_pred cchhhhhhhhHhhHHHHHHHHhcCcccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhh
Q 002696 497 QNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES 576 (891)
Q Consensus 497 ~~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~ 576 (891)
+++++.++|.|++.+++.++|+.++|+|+||+||+||||+++...|+|+++|+.+.+++..|.||+++|+|++|+||+++
T Consensus 482 ~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d~ 561 (881)
T COG5110 482 QAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRKDQ 561 (881)
T ss_pred cHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccch
Confidence 99999999999999888899999999999999999999999999999999999776668889999999999999999999
Q ss_pred HHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCC-----ccchhHHHHHhHHhhhcchhhHHH
Q 002696 577 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKG-----EAYQGPAVLGIAMVAMAEELGLEM 651 (891)
Q Consensus 577 ~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~-----~~vrr~avlglglI~~~~~~g~e~ 651 (891)
+|.+.+++.++++++.|...+++-+|+|+||||+..||.|||+|.+...|+ ..++..|++|+|+|+||+++|+||
T Consensus 562 ~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eM 641 (881)
T COG5110 562 VDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEM 641 (881)
T ss_pred hHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHH
Confidence 999999999999999999999999999999999999999999998766552 247789999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhh
Q 002696 652 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSS 731 (891)
Q Consensus 652 ~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~Lr~l~~ 731 (891)
+.|+|+|++||+++|||+.+|+|+|+++++||+++++|+|++++||.|..|..++|+|||+|||||+|+|++++|||++|
T Consensus 642 vlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~NaRlaqlLrQlaS 721 (881)
T COG5110 642 VLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDTLERSSHDGDLNVIINTIFAMGLIGAGTLNARLAQLLRQLAS 721 (881)
T ss_pred HHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchHHHHHHHHhccccchhHHHHHHHHhhccccCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccChhhHHHHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCchhHHHHHHhhhccccee
Q 002696 732 YYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRML 811 (891)
Q Consensus 732 ~~~~d~~~~f~~~iAqGll~~G~G~~tlsp~~sd~~~~~~~a~agLl~~l~~~~~~~~~i~~~~h~l~~~l~lA~~Pr~l 811 (891)
||+++.+++|.+||||||+++|||++|++|+|.|+.++.|++.|||+++.+.++|++.|.+..+|+++|||.++++|+++
T Consensus 722 YY~kes~aLfv~riAQGLl~LGKGtmti~p~~~d~~~l~~~~~agl~ttv~~lld~~~f~L~ssH~l~y~l~~~irp~~~ 801 (881)
T COG5110 722 YYYKESKALFVLRIAQGLLSLGKGTMTISPLYFDKTTLMPKNTAGLFTTVFMLLDSSIFPLVSSHALMYFLLCQIRPQKY 801 (881)
T ss_pred HHhhccchhhHHHHHHHHHHhcCCceeeccccccchhhcchhHHHHHHHHHHHHccccchhhhhHHHHHHHHhccCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred eeecCCCCcceeeeeecccccccccCCCcceeeceeeeecceeccCCCceeeccCCccccCCcccceEEeecCCCCCCC
Q 002696 812 LTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYRED 890 (891)
Q Consensus 812 i~ld~~l~~~~v~vrvg~~vd~vg~ag~pk~itg~qt~~tpvll~~~erael~~~~~~~~~~~leg~vi~~~n~~~~~~ 890 (891)
+|++|+++|++|+|||||||+||||||+||+|||||||||||+|+++||||++||||.|+|+.+||||||||||||.++
T Consensus 802 vtl~e~ge~i~vnvRVGqav~tVGqaGrPKkitgw~ThttPVlL~h~eRAEl~td~y~~~tS~iEgvvILKKN~d~~e~ 880 (881)
T COG5110 802 VTLSEKGEPIKVNVRVGQAVNTVGQAGRPKKITGWQTHTTPVLLSHKERAELDTDEYNVCTSYIEGVVILKKNPDYREE 880 (881)
T ss_pred EEecCCCceeeeEEeecchhhhhhccCCCceeeeeeecCcceeeccchhhhcccccccchhhhhceeEEEecCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999876
No 3
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-137 Score=1159.41 Aligned_cols=730 Identities=22% Similarity=0.317 Sum_probs=675.2
Q ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCCchHHHHHHHHHHHhhhccC
Q 002696 48 LELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSA 127 (891)
Q Consensus 48 l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~ 127 (891)
.-.++.+|+|+.++|+.+||..++++|+.+|+ ++.+.++.||.+|||.+|+ .|+++|.++|+|| |++
T Consensus 6 Aa~lialL~e~~~~lk~~Al~~in~vVd~~Wp----------EIsd~l~~IE~lyed~~F~-er~~AaL~~SKVy--y~L 72 (929)
T KOG2062|consen 6 AAGLIALLREPEPSLKVHALFKINNVVDQFWP----------EISDSLPKIESLYEDETFP-ERQLAALLASKVY--YYL 72 (929)
T ss_pred hHHHHHHHhCCchHHHHHHHHHHHHHHHHhhH----------HhhhhHHHHHHHhccCCCc-hhHHHHHHHHHHH--HHH
Confidence 45688999999999999999999999999954 5555666999999999999 5999999999998 999
Q ss_pred cccccchhhhhcCC-CCCCCCcccHHHHHHHHHHHHHHHHhccCC-------CCH-HHHHHHHHHHHHHHhcCCCHHHHH
Q 002696 128 EGERESLKYRLLGS-EGDIGSWGHEYVRNLAGEIAQEYAKRQTDE-------ASI-DDLMELVQEIVAFHMKHNAEPEAV 198 (891)
Q Consensus 128 ~~~~~~L~y~L~~~-~~d~~~wghEYvr~l~~ei~~~y~~~~~~~-------~~~-~~L~~lv~~iv~~~l~~n~e~eAv 198 (891)
++|+++|.|+|.|+ .||+.+ +++|+.+++++|+|.|.+.+.+. ..+ ++|+++|++|+..|+..|++.+|+
T Consensus 73 geye~Al~yAL~ag~~F~Vd~-~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~ai 151 (929)
T KOG2062|consen 73 GEYEDALEYALRAGDDFDVDE-NSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAI 151 (929)
T ss_pred HHHHHHHHHHHcCCccccccC-ccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999999995 899999 59999999999999999875431 123 699999999999999999999999
Q ss_pred HHHHhcCChhhhHH-HhhccChHHHHHHHHhhcccCCCCChH--HHHHHHHHHHHccC--CHHHHHHHHHhCCChHHHHH
Q 002696 199 DLLMEVEDLDLLVE-HVDATNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYMIYLKFE--EFPNALQIALFLDNMQYVKQ 273 (891)
Q Consensus 199 dlalE~~~ld~i~~-~vd~~~~~rv~~Yl~~~~~~~~~p~~~--~vl~~~~~iy~~~~--~~~~al~~al~l~d~~~i~~ 273 (891)
+||+|++|+|+|++ +++.++....|.|++..+..++..+.+ ++|+++++.|++.+ +|+..|+|.+.++|++.+.+
T Consensus 152 Gia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ 231 (929)
T KOG2062|consen 152 GIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVAD 231 (929)
T ss_pred hHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHH
Confidence 99999999999999 567788889999999999999888876 79999999999976 79999999999999999999
Q ss_pred HHHhc---chhHHHHHHHHHH---HhhcccccccCC----CCCCcccHHHHHHHHcccCcchhHHHHHHHhhccCCCChH
Q 002696 274 IFTSC---DDLLRKKQFCYIL---ARHGITLELDDD----MVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPE 343 (891)
Q Consensus 274 i~~~~---~d~~~~~Qlaf~l---arq~~~~~~~~~----~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~~e 343 (891)
+|+++ +|.+++||+||+| |.|+|+..+.+. +..++..-+++..||||+...+++++|.-++|.+|..+++
T Consensus 232 ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de~p~~kii~ILSGe~tik~~l~FL~~~N~tD~~iL~ 311 (929)
T KOG2062|consen 232 LLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDEKPMEKIISILSGEETIKLYLQFLLRHNNTDLLILE 311 (929)
T ss_pred HHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHcccccccccChHHHHHHHhcCchHHHHHHHHHHHcCCchHHHHH
Confidence 99998 4589999999999 567776543211 2223445678999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCcccchHHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccchhhHHHHHHHhccccc
Q 002696 344 DIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILL 423 (891)
Q Consensus 344 ~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~sA~aslGlI~~ 423 (891)
.| |..+ | .+.+|.|.+++|||||+||++|.|+|+|++ |+.|++||+||+|+||||+||+
T Consensus 312 ~i-K~s~---r--------~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~---------WlskAtNWaKFtAtAsLGvIH~ 370 (929)
T KOG2062|consen 312 EI-KESV---R--------NSVCHTATLIANAFMHAGTTSDTFLRNNLD---------WLSKATNWAKFTATASLGVIHR 370 (929)
T ss_pred HH-HHHH---H--------HhhhhHHHHHHHHHHhcCCcchHHHHhchh---------HHhhcchHhhhhhhhhcceeec
Confidence 99 7654 3 567899999999999999999999999998 9999999999999999999999
Q ss_pred ccchhhHHhHhhhhcC----CCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCC-CHHHHHHHHHHHHHHhccCCC
Q 002696 424 WDVDSGLAQIDKYFHS----TDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRE-DACIRIGAIMGLGISYAGTQN 498 (891)
Q Consensus 424 ~~~~~~l~~l~~yL~s----~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~-~~~v~~gA~lGLGlay~Gs~~ 498 (891)
||..+|++++.+|||+ ++.|.++||++|+|+||+||..+ +..+|.++|.+. ++++|||+|||||++.+||.+
T Consensus 371 G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~---~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~ 447 (929)
T KOG2062|consen 371 GHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG---ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN 447 (929)
T ss_pred cccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc---HHHHHHHHHHhccchhhhhhhhhhccchhccccc
Confidence 9999999999999997 68999999999999999999877 899999999864 689999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhH
Q 002696 499 DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 577 (891)
Q Consensus 499 ~~v~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~ 577 (891)
+++++.|+.+++ |+++++| +|++||||+++||.+.+++++|+++ +++|| |+++.|++++|++|++|||++.+
T Consensus 448 ~eiYe~lKevLy~D~AvsGE---AAgi~MGl~mlGt~~~eaiedm~~Y---a~ETQ-Heki~RGl~vGiaL~~ygrqe~A 520 (929)
T KOG2062|consen 448 EEIYEKLKEVLYNDSAVSGE---AAGIAMGLLMLGTANQEAIEDMLTY---AQETQ-HEKIIRGLAVGIALVVYGRQEDA 520 (929)
T ss_pred HHHHHHHHHHHhccchhhhh---HHHHhhhhHhhCcCcHHHHHHHHHH---hhhhh-HHHHHHHHHHhHHHHHhhhhhhh
Confidence 999999999997 8889999 7999999999999999999999998 67899 99999999999999999999999
Q ss_pred HHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHH
Q 002696 578 EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLE 657 (891)
Q Consensus 578 ~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~ 657 (891)
+.+|+.+..++||+.|+++++++++||+||||+.+|++|||++++|++| +|||+||+|||||++++| ++++++++
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nD--DVrRaAVialGFVl~~dp---~~~~s~V~ 595 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVND--DVRRAAVIALGFVLFRDP---EQLPSTVS 595 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccch--HHHHHHHHHheeeEecCh---hhchHHHH
Confidence 9999999999999999999999999999999999999999999999998 999999999999999999 99999999
Q ss_pred HHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC---chHHHHHHHHhhhhh-
Q 002696 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN---NARIAGMLRNLSSYY- 733 (891)
Q Consensus 658 ~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtn---n~rv~~~Lr~l~~~~- 733 (891)
.|++++|||||||+++|||++|||||+.++|++|+++++|++++|||+|+||+||||+|++ +|++..+++++.+.+
T Consensus 596 lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 596 LLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIN 675 (929)
T ss_pred HHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999988 599999999998876
Q ss_pred --ccChhhHHHHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCchhHHHHHHhhhccccee
Q 002696 734 --YKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRML 811 (891)
Q Consensus 734 --~~d~~~~f~~~iAqGll~~G~G~~tlsp~~sd~~~~~~~a~agLl~~l~~~~~~~~~i~~~~h~l~~~l~lA~~Pr~l 811 (891)
|+|.+++||+++||||+++||+|+||+.. ++.|+.+..|++||++|+|.| -||+|.||++||+.||++
T Consensus 676 dKhEd~~aK~GAilAqGildaGGrNvtislq-s~tg~~~~~~vvGl~~Flq~W---------yWfPL~~flSLaf~PT~v 745 (929)
T KOG2062|consen 676 DKHEDGMAKFGAILAQGILDAGGRNVTISLQ-SMTGHTKLDAVVGLVVFLQYW---------YWFPLIHFLSLAFTPTTV 745 (929)
T ss_pred hhhhHHHHHHHHHHHhhhhhcCCceEEEEEe-ccCCCCchHHHHHHHHHHHHH---------HHHHHHHHHHHhcCcceE
Confidence 78899999999999999999999999998 899999999999999999987 134599999999999999
Q ss_pred eeecCCCCcceeeeeecccccccccC
Q 002696 812 LTVDENLKPLSVPVRVGQAVDVVGQA 837 (891)
Q Consensus 812 i~ld~~l~~~~v~vrvg~~vd~vg~a 837 (891)
|++|+|||+|+++......-+....+
T Consensus 746 igln~dLk~Pk~e~~s~ak~~~faYP 771 (929)
T KOG2062|consen 746 IGLNEDLKIPKFEYISHAKPSLFAYP 771 (929)
T ss_pred EEeccccCCcceeeeccCChhhccCC
Confidence 99999999999998877666666554
No 4
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-111 Score=931.30 Aligned_cols=718 Identities=20% Similarity=0.269 Sum_probs=646.0
Q ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCCchHHHHHHHHHHHhhhccCc
Q 002696 49 ELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAE 128 (891)
Q Consensus 49 ~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~~ 128 (891)
..|...|.|-..+++.+||+.++..|+..| .++.+-++.||.+|+|.+|+ .|+++|.++|++| |.++
T Consensus 7 ~~L~all~e~~d~~~~~Al~~In~~vDqlw----------peIsddl~~Ie~lydd~sf~-~remaaL~~SKvY--y~Lg 73 (926)
T COG5116 7 RILPALLAELRDGRESEALDVINAHVDQLW----------PEISDDLRYIEALYDDDSFD-PREMAALCLSKVY--YVLG 73 (926)
T ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHHHHhh----------hhhhchhhHHHHhhccCCCC-HHHHHHHHHHHHH--HHHH
Confidence 346677777788899999999999999995 56777778999999999998 4999999999998 9999
Q ss_pred ccccchhhhhcCC-CCCCCCcccHHHHHHHHHHHHHHHHhccC-----CCC-H-HHHHHHHHHHHHHHhcCCCHHHHHHH
Q 002696 129 GERESLKYRLLGS-EGDIGSWGHEYVRNLAGEIAQEYAKRQTD-----EAS-I-DDLMELVQEIVAFHMKHNAEPEAVDL 200 (891)
Q Consensus 129 ~~~~~L~y~L~~~-~~d~~~wghEYvr~l~~ei~~~y~~~~~~-----~~~-~-~~L~~lv~~iv~~~l~~n~e~eAvdl 200 (891)
+|+++++|+|.++ .|++.+ |+.|+++++.+|++-|.....+ +.+ + +.|..+++.|+..|++.++..-+++|
T Consensus 74 eY~~Ai~yAL~agdrfl~D~-~S~y~etiv~k~iem~vh~~~~~y~~~~~d~iD~~l~~v~e~i~~kc~~~se~~~~lgI 152 (926)
T COG5116 74 EYQQAIEYALRAGDRFLVDD-GSFYYETIVYKSIEMYVHMMDSAYIGGDKDIIDRILDFVLEVIGAKCVDDSEIGYLLGI 152 (926)
T ss_pred hHHHHHHHHHhcCCceeecC-CccceehhHHhHHHHHHHHHHHhhhCCCcccchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999985 488887 7999999999999999977543 122 3 57889999999999999999999999
Q ss_pred HHhcCChhhhHHHhhccChHHHHHHHHhhcccCCCCChH--HHHHHHHHHHHccC--CHHHHHHHHHhCCChHHHHHHHH
Q 002696 201 LMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYMIYLKFE--EFPNALQIALFLDNMQYVKQIFT 276 (891)
Q Consensus 201 alE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~--~vl~~~~~iy~~~~--~~~~al~~al~l~d~~~i~~i~~ 276 (891)
++|.-|+|.|+.++...+..++..|++..+..++..+.+ ++|+.+.+++.... +|+-...|.+.|||.+.++++|+
T Consensus 153 a~eg~rldiie~~l~~~~d~di~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~ 232 (926)
T COG5116 153 AAEGLRLDIIEKYLSDGNDCDIINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIE 232 (926)
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHH
Confidence 999999999999999999999999999999998888776 69999999988763 68888899999999999999999
Q ss_pred hc---chhHHHHHHHHHH---HhhcccccccCCCCCCcccHHHHHHHHcccCcchhHHHHHHHhhccCCCChHHHHHhhh
Q 002696 277 SC---DDLLRKKQFCYIL---ARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHL 350 (891)
Q Consensus 277 ~~---~d~~~~~Qlaf~l---arq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~~e~iyK~~l 350 (891)
++ +|...--|+||++ |.|+++.-+..+..+ ...++.+..||||++..+++..|.-++|.+|.+.++.- |+.+
T Consensus 233 kL~~end~~l~aqvAFdledsasqe~leil~t~~vA-~~~d~av~~ILSGe~t~ky~~~FLl~~nntd~~~Ln~s-k~sl 310 (926)
T COG5116 233 KLVKENDLLLYAQVAFDLEDSASQEILEILVTELVA-QGYDQAVMSILSGEFTKKYLGAFLLEKNNTDFKFLNSS-KSSL 310 (926)
T ss_pred HHHhhhhhhhhhhheehhccccCHHHHHhccchhhh-ccccHHHHHHhcCcchhHHHHHHHHhcCCcceeehhcc-hhhh
Confidence 97 3444445999998 567776322110000 11246799999999999999999999999999999887 8877
Q ss_pred ccCCCCcccchHHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccchhhHHHHHHHhcccccccchhhH
Q 002696 351 LDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGL 430 (891)
Q Consensus 351 ~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~sA~aslGlI~~~~~~~~l 430 (891)
+ .| .++.|.|.+|+|+|||.||++|.|+++|++ |+.|+.+|+||+|+||+|+||+|+..+|.
T Consensus 311 ~-~k--------~s~fH~avs~AN~fMn~GTs~dsf~r~Nl~---------wlgka~nWaKFtatAslGvIH~gn~n~~~ 372 (926)
T COG5116 311 A-RK--------FSRFHYAVSLANSFMNLGTSNDSFYRNNLD---------WLGKASNWAKFTATASLGVIHLGNSNPGY 372 (926)
T ss_pred h-hh--------hhhhhhHHHHHHHHhhcCCCcchHhhcCch---------hhhhcchHhhhhhhhhceeEeeccCCchh
Confidence 7 23 367899999999999999999999999998 99999999999999999999999999999
Q ss_pred HhHhhhhcCC---CchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCC-C---HHHHHHHHHHHHHHhccCCCHHHHH
Q 002696 431 AQIDKYFHST---DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRE-D---ACIRIGAIMGLGISYAGTQNDQIRH 503 (891)
Q Consensus 431 ~~l~~yL~s~---~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~-~---~~v~~gA~lGLGlay~Gs~~~~v~e 503 (891)
+++.+|||++ +.++++||++|+|+|++|+.++ ..++|.+++.++ + +.+.+|+|||+|++.+||.|+++++
T Consensus 373 ~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr~---~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgSan~eiye 449 (926)
T COG5116 373 EILKPYLPSEVASSRQKEGGALYALGLIKAGFGRE---DTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGSANREIYE 449 (926)
T ss_pred HhhhccCCcccchhhhccCceeeeehhhccCcCcc---cHHHHHHHhCcccccccHHHHHHHHhhhcchhcccccHHHHH
Confidence 9999999965 4599999999999999998877 578888876553 3 4899999999999999999999999
Q ss_pred HHHHHhc-CCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHH
Q 002696 504 KLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAE 582 (891)
Q Consensus 504 ~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~ 582 (891)
.|+.++. |+++.+| +|++++||+++||+..++++.|+++ +++|| |+++.|++++|++|+.+|||+.++.+|.
T Consensus 450 ~lKe~l~nD~a~~ge---Aa~~gMGl~mLgt~s~eai~dm~ty---a~ETq-he~i~Rglgig~aLi~ygrqe~add~I~ 522 (926)
T COG5116 450 KLKELLKNDRALLGE---AAVYGMGLLMLGTWSVEAIEDMRTY---AGETQ-HERIKRGLGIGFALILYGRQEMADDYIN 522 (926)
T ss_pred HHHHHHhcchhhhhh---hhhhccceeeecCCCHHHHHHHHHH---hcchh-hhhHHhhhhhhhhHhhhhhHHHHHHHHH
Confidence 9999997 7777777 7999999999999999999999998 77899 9999999999999999999999999999
Q ss_pred HHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhc
Q 002696 583 VSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY 662 (891)
Q Consensus 583 ~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~ 662 (891)
.|..+.+++.||++++++++||+||||..+|+.||||+++|.+| +|||+||++||||++.++ ...+++++.|+.+
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nD--DVrRAAViAlGfvc~~D~---~~lv~tvelLs~s 597 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGND--DVRRAAVIALGFVCCDDR---DLLVGTVELLSES 597 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCch--HHHHHHHHheeeeEecCc---chhhHHHHHhhhc
Confidence 99999999999999999999999999999999999999999998 999999999999999999 8999999999999
Q ss_pred CChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC---chHHHHHHHHhhhhh---ccC
Q 002696 663 GEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN---NARIAGMLRNLSSYY---YKD 736 (891)
Q Consensus 663 ~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtn---n~rv~~~Lr~l~~~~---~~d 736 (891)
+|+|||+|+++|||++|||+|...++|+|++++.|++++|||+|.||+|||.+|+| ||++..+.+.+.+.+ |++
T Consensus 598 hN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 598 HNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred cchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999 688888888776654 677
Q ss_pred hhhHHHHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCchh-HHHHHHhhhcccceeeeec
Q 002696 737 ANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYH-YVLYFLVLAMQPRMLLTVD 815 (891)
Q Consensus 737 ~~~~f~~~iAqGll~~G~G~~tlsp~~sd~~~~~~~a~agLl~~l~~~~~~~~~i~~~~h-~l~~~l~lA~~Pr~li~ld 815 (891)
..+++|+.+||||.++||+|+||+.. +-.|.++-.+++||.+|+|.| || +|.||++|+|.||.+|+++
T Consensus 678 glaklGA~laqGi~~aGGRNvti~l~-natG~l~~~~ivGlv~FlqyW----------YWfPL~hf~SLsf~Pttvigi~ 746 (926)
T COG5116 678 GLAKLGAVLAQGISEAGGRNVTISLR-NATGILSADRIVGLVLFLQYW----------YWFPLIHFVSLSFLPTTVIGIR 746 (926)
T ss_pred HHHHHHHHHHhhhhhcCCceEEEEEe-cccCcccHHHHHHHHHHHHHH----------HHHHHHHHHhhhcCcceeeccc
Confidence 88999999999999999999999997 558999999999999999987 54 5999999999999999999
Q ss_pred CCCCcceeeee
Q 002696 816 ENLKPLSVPVR 826 (891)
Q Consensus 816 ~~l~~~~v~vr 826 (891)
.++..|+....
T Consensus 747 ~s~~~pkF~fn 757 (926)
T COG5116 747 GSQAIPKFCFN 757 (926)
T ss_pred ccccCceeeec
Confidence 88777765543
No 5
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-54 Score=487.99 Aligned_cols=545 Identities=20% Similarity=0.259 Sum_probs=429.5
Q ss_pred HHHHHHHHHHHHHHHHh--ccCCC--CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhh---HHHhhccChHHHH
Q 002696 151 EYVRNLAGEIAQEYAKR--QTDEA--SIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLL---VEHVDATNFKRTC 223 (891)
Q Consensus 151 EYvr~l~~ei~~~y~~~--~~~~~--~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i---~~~vd~~~~~rv~ 223 (891)
..|..+.-||.+.--.. .-.+. +-.++.+|+.+.|+||+ ++|.+|+.+||.+++...+ .+|+....+..+-
T Consensus 30 ~vVd~~WpEIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~L--geye~Al~yAL~ag~~F~Vd~~S~y~etivak~id 107 (929)
T KOG2062|consen 30 NVVDQFWPEISDSLPKIESLYEDETFPERQLAALLASKVYYYL--GEYEDALEYALRAGDDFDVDENSDYVETIVAKCID 107 (929)
T ss_pred HHHHHhhHHhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHcCCccccccCccchhhHHHHHHHH
Confidence 34555556665543222 11122 22479999999999999 9999999999999955422 2344444456666
Q ss_pred HHHHhhcccCCCCC-----h---HHHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHH-HHHhcchh---HHHHHHHHHH
Q 002696 224 LYLTSAAKYLPGPD-----D---MLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQ-IFTSCDDL---LRKKQFCYIL 291 (891)
Q Consensus 224 ~Yl~~~~~~~~~p~-----~---~~vl~~~~~iy~~~~~~~~al~~al~l~d~~~i~~-i~~~~~d~---~~~~Qlaf~l 291 (891)
.|+..++..+-.|+ | ..|.+.++..|...++|.++++++++..+.+.+++ ++++-.+. ....-++.-+
T Consensus 108 ~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~ 187 (929)
T KOG2062|consen 108 MYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISL 187 (929)
T ss_pred HHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 78888887665444 3 47899999999999999999999999999999998 44442111 1111111111
Q ss_pred H-----hhcccccc----cCCCCC-------------Cccc-------------------------HHHHHHHHcccC--
Q 002696 292 A-----RHGITLEL----DDDMVP-------------DDDD-------------------------RYALQDIVNNVK-- 322 (891)
Q Consensus 292 a-----rq~~~~~~----~~~~~~-------------~~~~-------------------------~~~l~~il~n~~-- 322 (891)
. |.+++..+ .+.+.+ |.+- ...-|++|....
T Consensus 188 v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~ 267 (929)
T KOG2062|consen 188 VNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDR 267 (929)
T ss_pred HhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHH
Confidence 1 22221110 000100 0000 001122222221
Q ss_pred c----chhHHHHHHHhhccCCCChHHHHHhhhccCCCCcccchHHHHHhHHHHHHHHHHhccc-CCccccccCCCCCCCC
Q 002696 323 L----SEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGF-GQDKLMTVPSDASSGG 397 (891)
Q Consensus 323 l----~~~~~~~~~~l~i~~~k~~e~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~-~~D~~l~~~~~~~~~~ 397 (891)
+ ...+....+-.+|+++....++|..||.+++++|...+++.+.++ .|+..|..+ -++.||+.. |
T Consensus 268 l~~d~~~de~p~~kii~ILSGe~tik~~l~FL~~~N~tD~~iL~~iK~s~----r~sv~H~A~~iAN~fMh~G------T 337 (929)
T KOG2062|consen 268 LPADDARDEKPMEKIISILSGEETIKLYLQFLLRHNNTDLLILEEIKESV----RNSVCHTATLIANAFMHAG------T 337 (929)
T ss_pred cccccccccChHHHHHHHhcCchHHHHHHHHHHHcCCchHHHHHHHHHHH----HHhhhhHHHHHHHHHHhcC------C
Confidence 0 011222446688899999999999999988999988888888765 677777665 589999876 4
Q ss_pred CCCccccccchhhHHHHHHHhcccccccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCC-
Q 002696 398 SSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR- 476 (891)
Q Consensus 398 ~~~~wl~k~~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~- 476 (891)
++++|+..|-+| |....+|.|+.|..+||+||.|+.++ ++++|.+||+.
T Consensus 338 T~D~FlR~NL~W---------------------------lskAtNWaKFtAtAsLGvIH~G~~~~---~~~ll~pYLP~~ 387 (929)
T KOG2062|consen 338 TSDTFLRNNLDW---------------------------LSKATNWAKFTATASLGVIHRGHENQ---AMKLLAPYLPKE 387 (929)
T ss_pred cchHHHHhchhH---------------------------HhhcchHhhhhhhhhcceeeccccch---HHHHhhhhCCcc
Confidence 689999999999 56778999999999999999999877 89999999997
Q ss_pred ---CCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccc
Q 002696 477 ---EDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESE 553 (891)
Q Consensus 477 ---~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~ 553 (891)
.+.+.+.||++||||+++|+++. +.++|+..|.+.+ +..+++++||||||+.|||.|.++++.+...|+..
T Consensus 388 ~~~~s~y~EGGalyAlGLIhA~hG~~-~~~yL~~~Lk~~~-~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D---- 461 (929)
T KOG2062|consen 388 AGEGSGYKEGGALYALGLIHANHGRG-ITDYLLQQLKTAE-NEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYND---- 461 (929)
T ss_pred CCCCCCccccchhhhhhccccCcCcc-HHHHHHHHHHhcc-chhhhhhhhhhccchhcccccHHHHHHHHHHHhcc----
Confidence 46788999999999999999987 9999999997543 45679999999999999999999999999988642
Q ss_pred cCchhHHHHHHHHHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhH
Q 002696 554 LGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGP 633 (891)
Q Consensus 554 l~e~~~r~~~lglgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~ 633 (891)
......++++|+||+|+ ||+|.+++..|++|+.+++++ .+.|+
T Consensus 462 -~AvsGEAAgi~MGl~ml----------------------------------Gt~~~eaiedm~~Ya~ETQHe--ki~RG 504 (929)
T KOG2062|consen 462 -SAVSGEAAGIAMGLLML----------------------------------GTANQEAIEDMLTYAQETQHE--KIIRG 504 (929)
T ss_pred -chhhhhHHHHhhhhHhh----------------------------------CcCcHHHHHHHHHHhhhhhHH--HHHHH
Confidence 22356677788887775 999999999999999999998 99999
Q ss_pred HHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHh-hcCCchHHHHHHHHHHHH
Q 002696 634 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL-SHDTDSEVAMAAVISLGL 712 (891)
Q Consensus 634 avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l-~~D~d~~Vr~~AiiALGl 712 (891)
..+||++++||+. |.+..++..|..+.||.+||+.++++|++|+||+|.++|..|.++ .+|++++||+.|++|+||
T Consensus 505 l~vGiaL~~ygrq---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGF 581 (929)
T KOG2062|consen 505 LAVGIALVVYGRQ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGF 581 (929)
T ss_pred HHHhHHHHHhhhh---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHhee
Confidence 9999999999998 999999999999999999999999999999999999999988777 899999999999999999
Q ss_pred HcCCCCc--hHHHHHHHHhhhhhccChhhHHHHHHHHhhhhcCCCcee----ecccCCCC-CCCChHHHHHHHHHHHhhc
Q 002696 713 IGSGTNN--ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLT----LNPYHSDR-FLLSPTALAGIVTTLFACL 785 (891)
Q Consensus 713 V~aGtnn--~rv~~~Lr~l~~~~~~d~~~~f~~~iAqGll~~G~G~~t----lsp~~sd~-~~~~~~a~agLl~~l~~~~ 785 (891)
|+..+++ +++.++|.. +.|||+|+|+.||+||.|+|+|+.. |.|+.+|. ++++|.|++++.+++.-+.
T Consensus 582 Vl~~dp~~~~s~V~lLse-----s~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 582 VLFRDPEQLPSTVSLLSE-----SYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred eEecChhhchHHHHHHhh-----hcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 9999986 788888887 7899999999999999999999986 99999998 9999999999999998766
Q ss_pred ccc
Q 002696 786 DMK 788 (891)
Q Consensus 786 ~~~ 788 (891)
|--
T Consensus 657 ~~~ 659 (929)
T KOG2062|consen 657 EQL 659 (929)
T ss_pred ccc
Confidence 543
No 6
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-50 Score=442.29 Aligned_cols=546 Identities=20% Similarity=0.248 Sum_probs=435.5
Q ss_pred cHHHHHHHHHHHHHHH--HhccCCC--CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC---hhhhHHHhhccChHHH
Q 002696 150 HEYVRNLAGEIAQEYA--KRQTDEA--SIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVED---LDLLVEHVDATNFKRT 222 (891)
Q Consensus 150 hEYvr~l~~ei~~~y~--~~~~~~~--~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~---ld~i~~~vd~~~~~rv 222 (891)
.++|..|..||.|.-. +..-.+. +-.++.+|+.+.|+|.+ ++|.+|+.+||.+++ +|.=.+|++.--|+.+
T Consensus 29 n~~vDqlwpeIsddl~~Ie~lydd~sf~~remaaL~~SKvYy~L--geY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~i 106 (926)
T COG5116 29 NAHVDQLWPEISDDLRYIEALYDDDSFDPREMAALCLSKVYYVL--GEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSI 106 (926)
T ss_pred HHHHHHhhhhhhchhhHHHHhhccCCCCHHHHHHHHHHHHHHHH--HhHHHHHHHHHhcCCceeecCCccceehhHHhHH
Confidence 4667777778877633 3222222 23479999999999999 999999999999997 3444456666667788
Q ss_pred HHHHHhhcccCCCCC----h---HHHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhcchhH-H--HHHHHHHHH
Q 002696 223 CLYLTSAAKYLPGPD----D---MLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLL-R--KKQFCYILA 292 (891)
Q Consensus 223 ~~Yl~~~~~~~~~p~----~---~~vl~~~~~iy~~~~~~~~al~~al~l~d~~~i~~i~~~~~d~~-~--~~Qlaf~la 292 (891)
-.|+..+......++ | ..|++.+...|.+.+++..++++++.--+.|.++.+++.-.|.. . ..-+|.-+.
T Consensus 107 em~vh~~~~~y~~~~~d~iD~~l~~v~e~i~~kc~~~se~~~~lgIa~eg~rldiie~~l~~~~d~di~~ylL~Lait~v 186 (926)
T COG5116 107 EMYVHMMDSAYIGGDKDIIDRILDFVLEVIGAKCVDDSEIGYLLGIAAEGLRLDIIEKYLSDGNDCDIINYLLDLAITLV 186 (926)
T ss_pred HHHHHHHHHhhhCCCcccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHh
Confidence 888888777666655 3 25999999999999999999999999999999999998743321 1 111222221
Q ss_pred -----hhcccc---ccc-CCCC-------------CC----------------------------cccHHHHHHHHcccC
Q 002696 293 -----RHGITL---ELD-DDMV-------------PD----------------------------DDDRYALQDIVNNVK 322 (891)
Q Consensus 293 -----rq~~~~---~~~-~~~~-------------~~----------------------------~~~~~~l~~il~n~~ 322 (891)
|..++. ++. ..+. +| +...+++.+||...-
T Consensus 187 ~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end~~l~aqvAFdledsasqe~leil~t~~ 266 (926)
T COG5116 187 EEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKENDLLLYAQVAFDLEDSASQEILEILVTEL 266 (926)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhhhhhhhhheehhccccCHHHHHhccchh
Confidence 322221 110 0000 00 001233344444443
Q ss_pred cchhHHHHHHHhhccCCCChHHHHHhhhccCCCCcccchHHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCcc
Q 002696 323 LSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNW 402 (891)
Q Consensus 323 l~~~~~~~~~~l~i~~~k~~e~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~~D~~l~~~~~~~~~~~~~~w 402 (891)
.-+.|- -..++|+++....++|..||.++++++...+++++.+++.-|.- |-++++-.+.||.-. |++++|
T Consensus 267 vA~~~d--~av~~ILSGe~t~ky~~~FLl~~nntd~~~Ln~sk~sl~~k~s~-fH~avs~AN~fMn~G------Ts~dsf 337 (926)
T COG5116 267 VAQGYD--QAVMSILSGEFTKKYLGAFLLEKNNTDFKFLNSSKSSLARKFSR-FHYAVSLANSFMNLG------TSNDSF 337 (926)
T ss_pred hhcccc--HHHHHHhcCcchhHHHHHHHHhcCCcceeehhcchhhhhhhhhh-hhhHHHHHHHHhhcC------CCcchH
Confidence 333332 24679999999999999999888889989999999999974432 555666788899765 458889
Q ss_pred ccccchhhHHHHHHHhcccccccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCC---H
Q 002696 403 LFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED---A 479 (891)
Q Consensus 403 l~k~~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~---~ 479 (891)
+..|-+| |...++|.|+.|..+||.||.|+.++ .++.|.+||++.. .
T Consensus 338 ~r~Nl~w---------------------------lgka~nWaKFtatAslGvIH~gn~n~---~~~il~pYLP~e~ass~ 387 (926)
T COG5116 338 YRNNLDW---------------------------LGKASNWAKFTATASLGVIHLGNSNP---GYEILKPYLPSEVASSR 387 (926)
T ss_pred hhcCchh---------------------------hhhcchHhhhhhhhhceeEeeccCCc---hhHhhhccCCcccchhh
Confidence 8888899 56788999999999999999999887 7999999999753 4
Q ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCC--CCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCch
Q 002696 480 CIRIGAIMGLGISYAGTQNDQIRHKLSTILNDA--KSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEP 557 (891)
Q Consensus 480 ~v~~gA~lGLGlay~Gs~~~~v~e~L~~~L~d~--~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~ 557 (891)
..+.||.+|||++++|.+ ++..++|+..+.|+ ....+++++++||+||+.|||.|+++++.+.+.+... +..
T Consensus 388 ~~eGGalyalGLI~Agfg-r~~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgSan~eiye~lKe~l~nD-----~a~ 461 (926)
T COG5116 388 QKEGGALYALGLIKAGFG-REDTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGSANREIYEKLKELLKND-----RAL 461 (926)
T ss_pred hccCceeeeehhhccCcC-cccHHHHHHHhCcccccccHHHHHHHHhhhcchhcccccHHHHHHHHHHHhcc-----hhh
Confidence 777899999999999966 57889999777543 2456889999999999999999999999999987642 234
Q ss_pred hHHHHHHHHHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHH
Q 002696 558 LTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLG 637 (891)
Q Consensus 558 ~~r~~~lglgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlg 637 (891)
...++++|+||+++ ||+++.+|..|++|+.+++++ .+.|+.-+|
T Consensus 462 ~geAa~~gMGl~mL----------------------------------gt~s~eai~dm~tya~ETqhe--~i~Rglgig 505 (926)
T COG5116 462 LGEAAVYGMGLLML----------------------------------GTWSVEAIEDMRTYAGETQHE--RIKRGLGIG 505 (926)
T ss_pred hhhhhhhccceeee----------------------------------cCCCHHHHHHHHHHhcchhhh--hHHhhhhhh
Confidence 56677888888887 999999999999999999997 899999999
Q ss_pred hHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHh-hcCCchHHHHHHHHHHHHHcCC
Q 002696 638 IAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL-SHDTDSEVAMAAVISLGLIGSG 716 (891)
Q Consensus 638 lglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l-~~D~d~~Vr~~AiiALGlV~aG 716 (891)
++||.+|++ ||+.+++..|..+.||..||+..|++|++|+||+|..++..|.++ .+|.+++||++|++|+|||.+.
T Consensus 506 ~aLi~ygrq---e~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~ 582 (926)
T COG5116 506 FALILYGRQ---EMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD 582 (926)
T ss_pred hhHhhhhhH---HHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEec
Confidence 999999998 999999999999999999999999999999999999999998888 8999999999999999999999
Q ss_pred CCc--hHHHHHHHHhhhhhccChhhHHHHHHHHhhhhcCCCcee----ecccCCCC-CCCChHHHHHHHHHHHhhcc
Q 002696 717 TNN--ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLT----LNPYHSDR-FLLSPTALAGIVTTLFACLD 786 (891)
Q Consensus 717 tnn--~rv~~~Lr~l~~~~~~d~~~~f~~~iAqGll~~G~G~~t----lsp~~sd~-~~~~~~a~agLl~~l~~~~~ 786 (891)
..+ +++.++|.. +.|+|+|.|+.+|+||.|+|+|.-. |+|+..|. ++++|.|++|+.+++.-+-+
T Consensus 583 D~~~lv~tvelLs~-----shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 583 DRDLLVGTVELLSE-----SHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred CcchhhHHHHHhhh-----ccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 887 466666666 6799999999999999999999865 89988898 99999999999999876644
No 7
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=359.17 Aligned_cols=475 Identities=18% Similarity=0.252 Sum_probs=372.7
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhc---cChHHHHHHHHhhcccCCCCC-hHHHHHHHHHHHH
Q 002696 175 DDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDA---TNFKRTCLYLTSAAKYLPGPD-DMLVLDIAYMIYL 250 (891)
Q Consensus 175 ~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~---~~~~rv~~Yl~~~~~~~~~p~-~~~vl~~~~~iy~ 250 (891)
++=..+.+.+...++|.|++++|+.+|+..++.+.+.++++. ..+++.|.|++..++...+-. +..+-.++.+-
T Consensus 236 Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~-- 313 (878)
T KOG2005|consen 236 PDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILSNG-- 313 (878)
T ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHccc--
Confidence 344678888999999999999999999999999999999876 346899999999998776653 35666667666
Q ss_pred ccCCHHHHHHHHHhCCChHHHHHHHHhc-chhHHHHHHHHHHHhhcccccccCCCCCCcccHHHHHHHHcccCcchhHHH
Q 002696 251 KFEEFPNALQIALFLDNMQYVKQIFTSC-DDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLT 329 (891)
Q Consensus 251 ~~~~~~~al~~al~l~d~~~i~~i~~~~-~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~ 329 (891)
+.++++.++..-+++.+|+..++||+.+ +|...----.-+.|||++...+ .+.|++
T Consensus 314 ~Lse~f~~LarELeimepk~pedIyK~hl~~~r~~s~a~vdSarqnla~~f-----------------------vNgFVn 370 (878)
T KOG2005|consen 314 KLSEHFLYLARELEIMEPKVPEDIYKSHLEDSRGGSGAGVDSARQNLAATF-----------------------VNGFVN 370 (878)
T ss_pred cHHHHHHHHHHHhcccCCCChHHHHHHHHhccccccccCccHHHHHHHHHH-----------------------HHHHhh
Confidence 4557999999999999999999999986 3332111111345666655443 234444
Q ss_pred H--HHHhhccCCC--ChHHHHHhhhccCCCCcccchHHHHHhHHHHHHHHHHhcccC-CccccccCCCCCCCCCCCcccc
Q 002696 330 L--ARDIEVMEPK--SPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMTVPSDASSGGSSGNWLF 404 (891)
Q Consensus 330 ~--~~~l~i~~~k--~~e~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~-~D~~l~~~~~~~~~~~~~~wl~ 404 (891)
. +++.-++++. ...|+||+..+ .+-||.++++.+..| -+..|.. .|++++
T Consensus 371 ~Gyg~Dkl~~~~~~s~~~w~yknke~--------g~~sa~aS~G~I~~W-nvd~gL~qldkyly---------------- 425 (878)
T KOG2005|consen 371 AGYGQDKLMLVQEGSRVNWLYKNKEH--------GMTSAAASLGMIQLW-NVDKGLEQLDKYLY---------------- 425 (878)
T ss_pred cccCCCceeccCccccCcceeecccc--------CchHhhhhcchhhee-cchhhHHHHHHHhh----------------
Confidence 3 4566566544 56799998754 233777777765543 5666644 566555
Q ss_pred ccchhhHHHHHHHhcccccc---cchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHH-
Q 002696 405 KNKEHGKMSAAASLGMILLW---DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDAC- 480 (891)
Q Consensus 405 k~~~~~k~sA~aslGlI~~~---~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~- 480 (891)
.+.++.|.+|..++|++..| +.++++++|.+|+.+++.-.+.||++|||++++|..+|. ++.+|++.+.+.+..
T Consensus 426 s~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~--V~~lL~Pi~~d~~~~~ 503 (878)
T KOG2005|consen 426 SDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREE--VLELLSPIMFDTKSPM 503 (878)
T ss_pred cCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHH--HHHHHhHHhcCCCCch
Confidence 45568999999999999987 567899999999999999999999999999999998764 777999999887655
Q ss_pred -HHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCC---CchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCc
Q 002696 481 -IRIGAIMGLGISYAGTQNDQIRHKLSTILNDAK---SPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGE 556 (891)
Q Consensus 481 -v~~gA~lGLGlay~Gs~~~~v~e~L~~~L~d~~---~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e 556 (891)
+..-|.++||++|+||||+|+...++..+++.+ ..-.+.++-+||||++|+|+++ .+++....++. ..+
T Consensus 504 ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe--~~d~~~e~~~~-----i~~ 576 (878)
T KOG2005|consen 504 EVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQE--SVDAVVETIKA-----IEG 576 (878)
T ss_pred hHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccc--hHHHHHHHHHH-----hhh
Confidence 445699999999999999999999999987432 3345778999999999999994 66777776643 257
Q ss_pred hhHHHHH-HHHHhhhcCChh--hH--HHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCH----H---HHHHHHhhhhccC
Q 002696 557 PLTRLIP-LGLGLLYLGKQE--SV--EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV----L---KVQNLLGHCAQHH 624 (891)
Q Consensus 557 ~~~r~~~-lglgLl~lG~~e--~~--~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~----~---~iq~LL~~~~~~~ 624 (891)
++.+++. +-.+|.|.|+++ .+ +.++..+.+....-.......++|||....|+. . .+.++|||..+
T Consensus 577 ~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~-- 654 (878)
T KOG2005|consen 577 PIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEP-- 654 (878)
T ss_pred HHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCH--
Confidence 8888887 455899999997 34 667777776555555556688999999999984 2 33467787654
Q ss_pred CCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhh----cCCch
Q 002696 625 EKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLS----HDTDS 700 (891)
Q Consensus 625 ~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~----~D~d~ 700 (891)
.+||+.++++|++..++| +-.+.+++++++|+.|+.|.+.+++|||+++|||+|.++..+|++++ +|++.
T Consensus 655 ----~iRravPLal~llsvSNP--q~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~ 728 (878)
T KOG2005|consen 655 ----HIRRAVPLALGLLSVSNP--QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKA 728 (878)
T ss_pred ----HHHHHHHHHHhhhccCCC--cchHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHHHHhccchh
Confidence 799999999999999999 57899999999999999999999999999999999999999999885 56654
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 002696 701 EVAMAAVISLGLIGSGTN 718 (891)
Q Consensus 701 ~Vr~~AiiALGlV~aGtn 718 (891)
.. .-.||+|++..|.+
T Consensus 729 Lf--~vriAQGL~hlGKG 744 (878)
T KOG2005|consen 729 LF--VVRIAQGLVHLGKG 744 (878)
T ss_pred HH--HHHHHHHHHHhcCC
Confidence 31 11399999999876
No 8
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-33 Score=308.09 Aligned_cols=555 Identities=19% Similarity=0.239 Sum_probs=406.8
Q ss_pred CCCccc--hhhhhHHHHHHHHhcC---C---CCchHHHHHHHHHHHhhhccCcccccchhhhhcCCC----CCCCCcccH
Q 002696 84 VPKPLK--FLRPHYGTLKAYYETM---P---DSDLKKYMADILSVLALTMSAEGERESLKYRLLGSE----GDIGSWGHE 151 (891)
Q Consensus 84 vpkplk--~l~~~~~~l~~~ye~~---~---~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~----~d~~~wghE 151 (891)
=||-|- |+|--...|.+.|.+. . |.+.|.++-+|+-++. -|. ...|++.+-+.=+. .|.-+- |-
T Consensus 145 D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpffl--kHN-aE~dAiDlL~Evg~Iekv~~fVd~-~n 220 (881)
T COG5110 145 DLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFL--KHN-AEFDAIDLLVEVGGIEKVLDFVDT-HN 220 (881)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHH--hcc-cchHHHHHHHHhcchhhhhhhhcc-cc
Confidence 345553 5666667788887621 1 3345777777777764 232 44577766655322 122221 33
Q ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhc---cChHHHHHHHHh
Q 002696 152 YVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDA---TNFKRTCLYLTS 228 (891)
Q Consensus 152 Yvr~l~~ei~~~y~~~~~~~~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~---~~~~rv~~Yl~~ 228 (891)
|-| +--|..-+..--+.++-.++.+.+...+++.|+..+|+-.|++.+..+.+.++++. ..|.+.|+|+++
T Consensus 221 ~~R------vclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~aiRl~~~~~i~e~~~a~~Dp~~kKQ~~YiLA 294 (881)
T COG5110 221 YNR------VCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILA 294 (881)
T ss_pred hhH------HHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccHHHHHHHHHhccChHHHHHHHHHHH
Confidence 322 22344333332234567889999999999999999999999999999999999875 568999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhc-chhHHHHHHH-HHHHhhcccccccCCCCC
Q 002696 229 AAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSC-DDLLRKKQFC-YILARHGITLELDDDMVP 306 (891)
Q Consensus 229 ~~~~~~~p~~~~vl~~~~~iy~~~~~~~~al~~al~l~d~~~i~~i~~~~-~d~~~~~Qla-f~larq~~~~~~~~~~~~ 306 (891)
.++...+--|.++-.++.+-|++ +++.+++..+.+.+|+..++||+.+ +....-+|.| ...|.|++...+
T Consensus 295 rq~~~~e~~dee~~dil~Ng~ls--dhf~ylgkELnl~~PkvpedI~K~hl~~~k~~~~~agi~sA~qnla~~f------ 366 (881)
T COG5110 295 RQNLYYEASDEEEKDILSNGYLS--DHFRYLGKELNLDKPKVPEDILKGHLKYDKDTRQLAGIGSANQNLAMGF------ 366 (881)
T ss_pred hccCCcccCCHHHHHHhcCCcHH--HHHHHHHHHhcCCCCCChHHHHHhhhhccccchhhcccchhhhHHHHhh------
Confidence 99988777666666677666544 7999999999999999999999984 5444556666 667777776654
Q ss_pred CcccHHHHHHHHcccCcchhHHHHHHHhhccCCCChHHHHHhhhccCCCCcccchHHHHHhHHHHHHHHHHhcccC-Ccc
Q 002696 307 DDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDK 385 (891)
Q Consensus 307 ~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~~e~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~-~D~ 385 (891)
.+.+++++.+++-+-|..-+||||.... .+-||.++.+....| -+..|.. -|+
T Consensus 367 -----------------vn~~inlgy~nD~li~~dd~wiyk~k~~--------gliSa~aSIG~i~~W-N~d~gl~~Ldk 420 (881)
T COG5110 367 -----------------VNDPINLGYENDSLIPLDDEWIYKCKVP--------GLISAFASIGVIESW-NSDKGLETLDK 420 (881)
T ss_pred -----------------hccccccCccCCeeeecchhhhhcCCCC--------Chhheeecchhhhhh-hhHhhHHHHHH
Confidence 2235566777777777778999997643 334666666654433 3333422 344
Q ss_pred ccccCCCCCCCCCCCccccccchhhHHHHHHHhcccccccc---hhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCC
Q 002696 386 LMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDV---DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND 462 (891)
Q Consensus 386 ~l~~~~~~~~~~~~~~wl~k~~~~~k~sA~aslGlI~~~~~---~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e 462 (891)
++|....+.|.+|..++|+...+.. ++++.+|.+|+.+++.-.+..|++|||++++|..+|
T Consensus 421 ----------------yly~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~e 484 (881)
T COG5110 421 ----------------YLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAE 484 (881)
T ss_pred ----------------HHhcCcccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHH
Confidence 5555556889999999999877644 458999999999999999999999999999998766
Q ss_pred hhhHHHHHHhhcCCCCHHHHH--HHHHHHHHHhccCCCHHHHHHHHHHhc-CC--CCchHHHHHHHHHhhhhhcCCCCHH
Q 002696 463 CDPALALLSEYVGREDACIRI--GAIMGLGISYAGTQNDQIRHKLSTILN-DA--KSPLDVIAFSAISLGLIYVGSCNEE 537 (891)
Q Consensus 463 ~d~~l~lL~~~L~~~~~~v~~--gA~lGLGlay~Gs~~~~v~e~L~~~L~-d~--~~~~e~~~~AaLaLGLi~lGs~n~~ 537 (891)
. ++.+|+|...+++.+++. -|.+.||.+|+||||+|+...+++.+. .. +...++-++.+||||++|.|.++
T Consensus 485 e--vl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d-- 560 (881)
T COG5110 485 E--VLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRKD-- 560 (881)
T ss_pred H--HHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccc--
Confidence 4 999999999888765554 589999999999999999999998885 22 23457888999999999999986
Q ss_pred HHHHHHHHHhhcCccccCchhHHHHH-HHHHhhhcCChh--hHHHHHHHHhhchhhhhh-----hhhHHHHHHHHhcCCC
Q 002696 538 VAQAIIFALMDRSESELGEPLTRLIP-LGLGLLYLGKQE--SVEATAEVSKTFNEKIRK-----YCDMTLLSCAYAGTGN 609 (891)
Q Consensus 538 ~~e~ll~~L~~~~~t~l~e~~~r~~~-lglgLl~lG~~e--~~~~li~~L~~~~~~i~r-----~~~~~~~glAyaGTGn 609 (891)
.+++...+++.- ..++.+... +.-||.|.|+++ .++.++..+.+.+.+-.+ --...++|||....|+
T Consensus 561 ~~d~v~eti~aI-----eg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGe 635 (881)
T COG5110 561 QVDDVEETIMAI-----EGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGE 635 (881)
T ss_pred hhHHHHHHHHHh-----cchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcc
Confidence 445555555431 223444433 445788999998 577777755433222111 1224578999998888
Q ss_pred H-------HHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCC
Q 002696 610 V-------LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISN 682 (891)
Q Consensus 610 ~-------~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt 682 (891)
. ..+..++||..+ .+|++.++++|++..++| +..+.+++++.+|++|-.|.+..++|||+++|||
T Consensus 636 dig~eMvlRhf~h~mhyg~~------hiR~~~PLa~gils~SnP--Qm~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT 707 (881)
T COG5110 636 DIGSEMVLRHFSHSMHYGSS------HIRSVLPLAYGILSPSNP--QMNVFDTLERSSHDGDLNVIINTIFAMGLIGAGT 707 (881)
T ss_pred hhhHHHHHHHhhhHhhcCcH------HHHHHHHHHHhcccCCCc--chHHHHHHHHhccccchhHHHHHHHHhhccccCc
Confidence 3 233456777654 699999999999999999 5779999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhh----cCCch-HHHHHHHHHHHHHcCCCC
Q 002696 683 PKVNVMDTLSRLS----HDTDS-EVAMAAVISLGLIGSGTN 718 (891)
Q Consensus 683 ~~~~aid~L~~l~----~D~d~-~Vr~~AiiALGlV~aGtn 718 (891)
.|.++.++|+++. ++++. +|- .||+|++..|.+
T Consensus 708 ~NaRlaqlLrQlaSYY~kes~aLfv~---riAQGLl~LGKG 745 (881)
T COG5110 708 LNARLAQLLRQLASYYYKESKALFVL---RIAQGLLSLGKG 745 (881)
T ss_pred chHHHHHHHHHHHHHHhhccchhhHH---HHHHHHHHhcCC
Confidence 9999999999875 45543 232 399999998866
No 9
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-30 Score=314.91 Aligned_cols=426 Identities=20% Similarity=0.257 Sum_probs=307.6
Q ss_pred ccchhhHHHHHHHhcccccccchh-hHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHH
Q 002696 405 KNKEHGKMSAAASLGMILLWDVDS-GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRI 483 (891)
Q Consensus 405 k~~~~~k~sA~aslGlI~~~~~~~-~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~ 483 (891)
.-++|+.|.+..|.|+--..--.+ --++|.---|.+....+||-++|||+- ||...- ..--+-.||...++.+.+
T Consensus 814 ~~teWp~FhngVa~GLrIsp~~~~Ids~WI~fnkp~~~~a~haGfl~glGLn--GhL~~L--~~~~i~qyls~~h~~tSv 889 (1496)
T KOG1858|consen 814 ELTEWPEFHNGVASGLRISPFATEIDSSWIVFNKPKELTAEHAGFLFGLGLN--GHLKAL--NTWHIYQYLSPKHEMTSV 889 (1496)
T ss_pred ccccchhhHHHHHhhcccCcccccccceeEEEecCCCcchheeheeeecccc--cccccc--cHHHHHHHccCCCcceeH
Confidence 447899999999999843321111 011222112457788999999999997 554321 111234678888999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHhc---C-----CCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCc----
Q 002696 484 GAIMGLGISYAGTQNDQIRHKLSTILN---D-----AKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSE---- 551 (891)
Q Consensus 484 gA~lGLGlay~Gs~~~~v~e~L~~~L~---d-----~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~---- 551 (891)
|-++||+.+|.||++..+...|.-.|. . -+++.-++.+|.+|+||+|.||++..+.+.+++.+.....
T Consensus 890 gLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~~e~~ 969 (1496)
T KOG1858|consen 890 GLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPNPENV 969 (1496)
T ss_pred HHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCCcccc
Confidence 999999999999999999988876652 1 1233446779999999999999999999999998865422
Q ss_pred cccCchhHHHHHHHHHhhhcCChhhH---------HHHHHHHh-------------------------hchhhhhhhhhH
Q 002696 552 SELGEPLTRLIPLGLGLLYLGKQESV---------EATAEVSK-------------------------TFNEKIRKYCDM 597 (891)
Q Consensus 552 t~l~e~~~r~~~lglgLl~lG~~e~~---------~~li~~L~-------------------------~~~~~i~r~~~~ 597 (891)
++ +|.+.+++++++||+++|++... +.+..-+. ..+-.+..+|++
T Consensus 970 ~~-rE~Y~laAG~SLGLi~LG~G~~~~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~~pGAv 1048 (1496)
T KOG1858|consen 970 LE-REGYKLAAGFSLGLINLGRGSNLPGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVTAPGAV 1048 (1496)
T ss_pred hh-hhhhhhhcCcccceeeeccCCCCcchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecCCccHH
Confidence 13 67899999999999999998642 22222222 011235578999
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhhhccCCC---CccchhHHHHHhHHhhhcch-----hhHHHHHHHHHHHhhc-------
Q 002696 598 TLLSCAYAGTGNVLKVQNLLGHCAQHHEK---GEAYQGPAVLGIAMVAMAEE-----LGLEMAIRSLEHLLQY------- 662 (891)
Q Consensus 598 ~~~glAyaGTGn~~~iq~LL~~~~~~~~d---~~~vrr~avlglglI~~~~~-----~g~e~~~~~l~~L~~~------- 662 (891)
+|+++.|..|+|..+...| ..-...... .++.--..++|..+|+|.+- |-+.++|+.+..-..+
T Consensus 1049 iAl~mmflktnn~~Ia~~l-~~p~t~yll~~vrPd~l~lR~~a~~lImW~~I~p~~~wv~~~vp~~ir~~~~~~~dvd~~ 1127 (1496)
T KOG1858|consen 1049 IALGMMFLKTNNFEIANAL-RPPDTRYLLDFVRPDFLLLRVIARNLIMWDRIKPDYDWVKSQVPDVIREQADLQEDVDLE 1127 (1496)
T ss_pred HHHHHHHHHhchHHHHhhc-CCCchhhHHhhcchHHHHHHHHHhhhhHHHhhCchHHHHHhhCCHHHHHhhhhhhhhhhh
Confidence 9999999999997665543 211111110 01344678999999999862 3345566655321111
Q ss_pred ----CChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcC-------C----ch----H----HHHHHHHHHHHHcCCCCc
Q 002696 663 ----GEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHD-------T----DS----E----VAMAAVISLGLIGSGTNN 719 (891)
Q Consensus 663 ----~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D-------~----d~----~----Vr~~AiiALGlV~aGtnn 719 (891)
---++-.|+|||+|+.+|||+|.++.++|..+..| | +. . .-+--|+++++||+|++|
T Consensus 1128 tl~q~~~~~~aGac~slgLrfagt~n~~aknil~s~v~~fl~l~~~P~~~~~~~~~~~tv~~cl~v~i~sls~vmagSgd 1207 (1496)
T KOG1858|consen 1128 TLSQAYVNILAGACFSLGLRFAGTGNLKAKNILNSFVDDFLRLCSLPLKSNDGRVTAVTVERCLSVLIISLSMVMAGSGD 1207 (1496)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHhhccCccCCCcccchhHHHHHHHHHHHHHHHHhhcCc
Confidence 01357899999999999999999999998776432 1 11 1 113468999999999999
Q ss_pred hHHHHHHHHhhhhhc----cChhhHHHHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCch
Q 002696 720 ARIAGMLRNLSSYYY----KDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKY 795 (891)
Q Consensus 720 ~rv~~~Lr~l~~~~~----~d~~~~f~~~iAqGll~~G~G~~tlsp~~sd~~~~~~~a~agLl~~l~~~~~~~~~i~~~~ 795 (891)
.+|.+.+|.|++..+ .+-..++++++|.||+++|+|+.|+|. ++.+++.+++.+|+-++.. +-++++
T Consensus 1208 leVlr~~r~Lr~~~~~~~~~~yg~~ma~h~alGil~lG~Gr~t~s~--------s~~sIa~ll~slfp~fP~~-~~Dnr~ 1278 (1496)
T KOG1858|consen 1208 LEVLRRLRFLRSRTSPYGHMNYGAQMATHMALGILFLGGGRYTIST--------SNLSIAALLISLFPHFPIS-PSDNRY 1278 (1496)
T ss_pred hHHHHHHHHHHHhccCCCcccchhHHHHHHhhceeEecCcccccCC--------CcHHHHHHHHHhCCCCCCC-CcccHH
Confidence 998888888887654 334578999999999999999999998 3689999999999987654 557888
Q ss_pred hH--HHHHHhhhcccceeeeecCCCCcc-eeeeeecccccccccCCCcceeeceeeeecceec
Q 002696 796 HY--VLYFLVLAMQPRMLLTVDENLKPL-SVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLL 855 (891)
Q Consensus 796 h~--l~~~l~lA~~Pr~li~ld~~l~~~-~v~vrvg~~vd~vg~ag~pk~itg~qt~~tpvll 855 (891)
|. ++|++++|++||+++++|-|.+.+ -+++.|++.--+. ..+ |.-+|++|
T Consensus 1279 hlqalR~l~~La~e~r~lip~didt~~~~l~~~~v~~k~~~~------~~~----~~iap~lL 1331 (1496)
T KOG1858|consen 1279 HLQALRHLYVLAVEPRLLIPRDIDTGQPCLAPLNVVQKGTTL------YSL----TEIAPILL 1331 (1496)
T ss_pred HHHHHHHHHHHhcccccccccccccCceEEEeeeEEecccch------hhh----hhcCCeec
Confidence 85 999999999999999999887654 6888876652222 112 35689999
No 10
>PRK09687 putative lyase; Provisional
Probab=99.23 E-value=2.8e-09 Score=116.67 Aligned_cols=246 Identities=13% Similarity=0.095 Sum_probs=152.1
Q ss_pred HHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC---CHHHHHHHH
Q 002696 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ---NDQIRHKLS 506 (891)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~---~~~v~e~L~ 506 (891)
...|.++|.+.+..++..|+.+||.+.. +.++..+...+.+++..+|..|+-+||-. |.. ..++...|.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~------~~~~~~l~~ll~~~d~~vR~~A~~aLg~l--g~~~~~~~~a~~~L~ 96 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG------QDVFRLAIELCSSKNPIERDIGADILSQL--GMAKRCQDNVFNILN 96 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc------chHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCccchHHHHHHHH
Confidence 4456777888889999999999997743 22777788888888899999999999984 433 256788888
Q ss_pred HHh-cCCCCchHHHHHHHHHhhhhhcCCC--CHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHH
Q 002696 507 TIL-NDAKSPLDVIAFSAISLGLIYVGSC--NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEV 583 (891)
Q Consensus 507 ~~L-~d~~~~~e~~~~AaLaLGLi~lGs~--n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~ 583 (891)
..+ .|+ ..++...|+-+||-+.-+.. ..++.+.+...+.+ .+..+|+.+ +.+|..+|.++.++.++..
T Consensus 97 ~l~~~D~--d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D------~~~~VR~~a-~~aLg~~~~~~ai~~L~~~ 167 (280)
T PRK09687 97 NLALEDK--SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD------KSTNVRFAV-AFALSVINDEAAIPLLINL 167 (280)
T ss_pred HHHhcCC--CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC------CCHHHHHHH-HHHHhccCCHHHHHHHHHH
Confidence 774 454 35666788888887632221 23344444443321 123344433 3344566666777777776
Q ss_pred HhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcC
Q 002696 584 SKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYG 663 (891)
Q Consensus 584 L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~ 663 (891)
|. ++++..|+.+++++|-. +.++..++..|..... |.+. .||..|+.|+|-+ +++ .-++.++..| +++
T Consensus 168 L~-d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~-D~~~--~VR~~A~~aLg~~--~~~---~av~~Li~~L-~~~ 235 (280)
T PRK09687 168 LK-DPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQ-DKNE--EIRIEAIIGLALR--KDK---RVLSVLIKEL-KKG 235 (280)
T ss_pred hc-CCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhc-CCCh--HHHHHHHHHHHcc--CCh---hHHHHHHHHH-cCC
Confidence 65 34556666665554433 5556666666655553 2232 6777777777764 333 3344444443 443
Q ss_pred ChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhc-CCchHHHHHHHHHH
Q 002696 664 EQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH-DTDSEVAMAAVISL 710 (891)
Q Consensus 664 np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~-D~d~~Vr~~AiiAL 710 (891)
+ +|..++-|||-+ |.++++..|.++.+ ++|..|++-|+-++
T Consensus 236 ~--~~~~a~~ALg~i----g~~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 236 T--VGDLIIEAAGEL----GDKTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred c--hHHHHHHHHHhc----CCHhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 3 666677777765 44567777777765 66777777666554
No 11
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.5e-10 Score=140.20 Aligned_cols=173 Identities=21% Similarity=0.314 Sum_probs=123.2
Q ss_pred CCccccccchh--hHHHH--HHHhcccccccchh-hHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhh
Q 002696 399 SGNWLFKNKEH--GKMSA--AASLGMILLWDVDS-GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEY 473 (891)
Q Consensus 399 ~~~wl~k~~~~--~k~sA--~aslGlI~~~~~~~-~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~ 473 (891)
+.+||--||.- .--.| +.++|+ .||... ..-.+..||...++.+..|.|+|++..|-|.++. ++..+|+-|
T Consensus 839 ds~WI~fnkp~~~~a~haGfl~glGL--nGhL~~L~~~~i~qyls~~h~~tSvgLLlGlsaS~~GtmD~--ki~Kllsvh 914 (1496)
T KOG1858|consen 839 DSSWIVFNKPKELTAEHAGFLFGLGL--NGHLKALNTWHIYQYLSPKHEMTSVGLLLGLSASYRGTMDA--KITKLLSVH 914 (1496)
T ss_pred cceeEEEecCCCcchheeheeeeccc--ccccccccHHHHHHHccCCCcceeHHHHhhhhHhhcCccch--hHHHHHHHH
Confidence 45699766532 22222 344443 456543 2344678888999999999999999999998754 588899888
Q ss_pred cCCC----------CHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcC-CCC----c-hHHHHHHHHHhhhhhcCCCCH-
Q 002696 474 VGRE----------DACIRIGAIMGLGISYAGTQNDQIRHKLSTILND-AKS----P-LDVIAFSAISLGLIYVGSCNE- 536 (891)
Q Consensus 474 L~~~----------~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~~L~d-~~~----~-~e~~~~AaLaLGLi~lGs~n~- 536 (891)
|+.- +..+|.+|++|+|+.|+||++..+.+.|+.-+.. +.. . -.+..+|+++||||++|.|+.
T Consensus 915 l~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~~e~~~~rE~Y~laAG~SLGLi~LG~G~~~ 994 (1496)
T KOG1858|consen 915 LSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPNPENVLEREGYKLAAGFSLGLINLGRGSNL 994 (1496)
T ss_pred HhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCCcccchhhhhhhhhcCcccceeeeccCCCC
Confidence 8641 3689999999999999999999999999987752 211 1 235779999999999999854
Q ss_pred ------HHHHHHHHHHhhc---------------------CccccCchhHHHHHHHHHhhhcCChh
Q 002696 537 ------EVAQAIIFALMDR---------------------SESELGEPLTRLIPLGLGLLYLGKQE 575 (891)
Q Consensus 537 ------~~~e~ll~~L~~~---------------------~~t~l~e~~~r~~~lglgLl~lG~~e 575 (891)
...+.++.+|.+. ..+.--+.-+.+++++++++|+..++
T Consensus 995 ~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~~pGAviAl~mmflktnn 1060 (1496)
T KOG1858|consen 995 PGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVTAPGAVIALGMMFLKTNN 1060 (1496)
T ss_pred cchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecCCccHHHHHHHHHHHhch
Confidence 3567788888721 01100112245889999999997553
No 12
>PRK09687 putative lyase; Provisional
Probab=99.14 E-value=9.3e-09 Score=112.58 Aligned_cols=243 Identities=14% Similarity=0.089 Sum_probs=166.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCC---HHHHHHH
Q 002696 466 ALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN---EEVAQAI 542 (891)
Q Consensus 466 ~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n---~~~~e~l 542 (891)
....|.++|.+++..+|..|+.+|+.. | .+++...+...+.|+ +..+..+|+-+||.+ |... .++...|
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~--~--~~~~~~~l~~ll~~~--d~~vR~~A~~aLg~l--g~~~~~~~~a~~~L 95 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLR--G--GQDVFRLAIELCSSK--NPIERDIGADILSQL--GMAKRCQDNVFNIL 95 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhc--C--cchHHHHHHHHHhCC--CHHHHHHHHHHHHhc--CCCccchHHHHHHH
Confidence 345677888999999999999999864 3 578999999987765 346667899999985 4332 3455555
Q ss_pred HHHHhhcCccccCchhHHHH-HHHHHhhhcCChhh------HHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHH
Q 002696 543 IFALMDRSESELGEPLTRLI-PLGLGLLYLGKQES------VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQN 615 (891)
Q Consensus 543 l~~L~~~~~t~l~e~~~r~~-~lglgLl~lG~~e~------~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~ 615 (891)
...+.+. .++.+|.. +-+|| ++|.... .+.+.. +..++++..|++++.++| ..|+..++..
T Consensus 96 ~~l~~~D-----~d~~VR~~A~~aLG--~~~~~~~~~~~~a~~~l~~-~~~D~~~~VR~~a~~aLg----~~~~~~ai~~ 163 (280)
T PRK09687 96 NNLALED-----KSACVRASAINATG--HRCKKNPLYSPKIVEQSQI-TAFDKSTNVRFAVAFALS----VINDEAAIPL 163 (280)
T ss_pred HHHHhcC-----CCHHHHHHHHHHHh--cccccccccchHHHHHHHH-HhhCCCHHHHHHHHHHHh----ccCCHHHHHH
Confidence 5443321 34556644 44444 4554332 222222 334457788887776553 5578889999
Q ss_pred HHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhh
Q 002696 616 LLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLS 695 (891)
Q Consensus 616 LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~ 695 (891)
|+....+ .+. +||..|+.+||-+..+.| .+...+..++.+.|+.||.++..+||-+ ++.+++..|.+..
T Consensus 164 L~~~L~d-~~~--~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~~~av~~Li~~L 232 (280)
T PRK09687 164 LINLLKD-PNG--DVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIRIEAIIGLALR----KDKRVLSVLIKEL 232 (280)
T ss_pred HHHHhcC-CCH--HHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHHHHHHHHHHcc----CChhHHHHHHHHH
Confidence 9988764 333 799999999999955554 4445555555888999999999999986 6789999999999
Q ss_pred cCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHHHHHHH
Q 002696 696 HDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIA 746 (891)
Q Consensus 696 ~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~Lr~l~~~~~~d~~~~f~~~iA 746 (891)
.|++ |+..|+.|+|-++- ++....|.++... ..|+.++.-++-|
T Consensus 233 ~~~~--~~~~a~~ALg~ig~----~~a~p~L~~l~~~-~~d~~v~~~a~~a 276 (280)
T PRK09687 233 KKGT--VGDLIIEAAGELGD----KTLLPVLDTLLYK-FDDNEIITKAIDK 276 (280)
T ss_pred cCCc--hHHHHHHHHHhcCC----HhHHHHHHHHHhh-CCChhHHHHHHHH
Confidence 8876 78889999998844 3555555555442 2366555555443
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.08 E-value=3.4e-08 Score=124.21 Aligned_cols=289 Identities=17% Similarity=0.098 Sum_probs=199.7
Q ss_pred chhhHHHHHHHhcccccccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHH
Q 002696 407 KEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAI 486 (891)
Q Consensus 407 ~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~ 486 (891)
..|.++.++.+|+ .+.+..|..+|.++++.+|..|+.+||-+.. + .++..|...|.+++..+|..|+
T Consensus 607 ~~~~~~~~~~~l~-------~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----~--~~~~~L~~aL~D~d~~VR~~Aa 673 (897)
T PRK13800 607 PPSPRILAVLALD-------APSVAELAPYLADPDPGVRRTAVAVLTETTP----P--GFGPALVAALGDGAAAVRRAAA 673 (897)
T ss_pred CchHHHHHHHhcc-------chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc----h--hHHHHHHHHHcCCCHHHHHHHH
Confidence 4578888887772 3356778899999999999999999998742 2 2778888999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHH
Q 002696 487 MGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGL 566 (891)
Q Consensus 487 lGLGlay~Gs~~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lgl 566 (891)
-+|+-+.-.... ...|...|.++ +.++...|+-+||.+.. ++. ..+++.|.+ .+...|..+ .-
T Consensus 674 ~aL~~l~~~~~~---~~~L~~~L~~~--d~~VR~~A~~aL~~~~~--~~~---~~l~~~L~D------~d~~VR~~A-v~ 736 (897)
T PRK13800 674 EGLRELVEVLPP---APALRDHLGSP--DPVVRAAALDVLRALRA--GDA---ALFAAALGD------PDHRVRIEA-VR 736 (897)
T ss_pred HHHHHHHhccCc---hHHHHHHhcCC--CHHHHHHHHHHHHhhcc--CCH---HHHHHHhcC------CCHHHHHHH-HH
Confidence 998765211111 24555666654 44777788888888643 332 344554421 344555444 22
Q ss_pred HhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcch
Q 002696 567 GLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEE 646 (891)
Q Consensus 567 gLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~ 646 (891)
+|..++. .+.++. +..++++..|..+ +.+++..|++....+..|+....+. + +.||..|+-+||-+.. +
T Consensus 737 aL~~~~~---~~~l~~-~l~D~~~~VR~~a--a~aL~~~~~~~~~~~~~L~~ll~D~-d--~~VR~aA~~aLg~~g~--~ 805 (897)
T PRK13800 737 ALVSVDD---VESVAG-AATDENREVRIAV--AKGLATLGAGGAPAGDAVRALTGDP-D--PLVRAAALAALAELGC--P 805 (897)
T ss_pred HHhcccC---cHHHHH-HhcCCCHHHHHHH--HHHHHHhccccchhHHHHHHHhcCC-C--HHHHHHHHHHHHhcCC--c
Confidence 3334443 334444 4455677777654 4567788888776667777665433 3 3899999999998843 3
Q ss_pred hhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHH
Q 002696 647 LGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGML 726 (891)
Q Consensus 647 ~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~L 726 (891)
+.+...+...+.+.++.||.+++-|||.+ +..++++.|.++..|++..||+.|+.|||-+ ..++.....|
T Consensus 806 ---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~~~a~~~L 875 (897)
T PRK13800 806 ---PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDPHLDVRKAAVLALTRW---PGDPAARDAL 875 (897)
T ss_pred ---chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCCHHHHHHH
Confidence 33333344555778899999999999987 5678999999999999999999999999986 2345556666
Q ss_pred HHhhhhhccChhhHHHHHHHHh
Q 002696 727 RNLSSYYYKDANLLFCVRIAQG 748 (891)
Q Consensus 727 r~l~~~~~~d~~~~f~~~iAqG 748 (891)
....+ ..|+.++=.++.|++
T Consensus 876 ~~al~--D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 876 TTALT--DSDADVRAYARRALA 895 (897)
T ss_pred HHHHh--CCCHHHHHHHHHHHh
Confidence 55444 467777777766654
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.77 E-value=6.2e-07 Score=113.01 Aligned_cols=264 Identities=18% Similarity=0.111 Sum_probs=181.6
Q ss_pred ccccchhhHHHHHHHhcccccccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHH
Q 002696 403 LFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIR 482 (891)
Q Consensus 403 l~k~~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~ 482 (891)
|.......|..|+.+||-+.. .+++..|...|.+++..+|..|+.+|+-+.... +....|...|.++++.+|
T Consensus 630 L~D~d~~VR~~Av~~L~~~~~---~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----~~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 630 LADPDPGVRRTAVAVLTETTP---PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----PPAPALRDHLGSPDPVVR 701 (897)
T ss_pred hcCCCHHHHHHHHHHHhhhcc---hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----CchHHHHHHhcCCCHHHH
Confidence 334556789999999997642 445677778888899999999999998773211 122355677888899999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHH
Q 002696 483 IGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLI 562 (891)
Q Consensus 483 ~gA~lGLGlay~Gs~~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~ 562 (891)
..|+-.||....+. . ..|...|.|+ +.++...|+-+||-+ +. .+.++..+. + .+..+|..
T Consensus 702 ~~A~~aL~~~~~~~--~---~~l~~~L~D~--d~~VR~~Av~aL~~~--~~-----~~~l~~~l~--D----~~~~VR~~ 761 (897)
T PRK13800 702 AAALDVLRALRAGD--A---ALFAAALGDP--DHRVRIEAVRALVSV--DD-----VESVAGAAT--D----ENREVRIA 761 (897)
T ss_pred HHHHHHHHhhccCC--H---HHHHHHhcCC--CHHHHHHHHHHHhcc--cC-----cHHHHHHhc--C----CCHHHHHH
Confidence 99999999864432 2 3566677775 446677899999875 22 233444331 1 23445544
Q ss_pred HHHHHhhhcCChhh--HHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHH
Q 002696 563 PLGLGLLYLGKQES--VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAM 640 (891)
Q Consensus 563 ~lglgLl~lG~~e~--~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglgl 640 (891)
+ +-+|..+|..+. .+.+. .+..+++|..|..++-+ |+-.|... ..++.+++...+ .+. .||+.|+-+||.
T Consensus 762 a-a~aL~~~~~~~~~~~~~L~-~ll~D~d~~VR~aA~~a--Lg~~g~~~-~~~~~l~~aL~d-~d~--~VR~~Aa~aL~~ 833 (897)
T PRK13800 762 V-AKGLATLGAGGAPAGDAVR-ALTGDPDPLVRAAALAA--LAELGCPP-DDVAAATAALRA-SAW--QVRQGAARALAG 833 (897)
T ss_pred H-HHHHHHhccccchhHHHHH-HHhcCCCHHHHHHHHHH--HHhcCCcc-hhHHHHHHHhcC-CCh--HHHHHHHHHHHh
Confidence 3 235556666553 35555 45556778988876654 44444432 233555555433 332 799999999998
Q ss_pred hhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 002696 641 VAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 711 (891)
Q Consensus 641 I~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALG 711 (891)
+. . +.+...+..++.+.++.||+.++.|||-+ .+++.+.+.|.+..+|.|.+||+.|..||.
T Consensus 834 l~--~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 834 AA--A----DVAVPALVEALTDPHLDVRKAAVLALTRW---PGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred cc--c----cchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 63 2 34556666667889999999999999986 357789999999999999999999999886
No 15
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.18 E-value=0.00041 Score=77.55 Aligned_cols=214 Identities=20% Similarity=0.222 Sum_probs=118.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 002696 467 LALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFAL 546 (891)
Q Consensus 467 l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L 546 (891)
...+...+.+++..+|+.|...||.. ..++.+..|...+.|.+ ..+...|+.+||-+. +++.+..++..|
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~----~~~~av~~l~~~l~d~~--~~vr~~a~~aLg~~~----~~~a~~~li~~l 114 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGEL----GSEEAVPLLRELLSDED--PRVRDAAADALGELG----DPEAVPPLVELL 114 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhh----chHHHHHHHHHHhcCCC--HHHHHHHHHHHHccC----ChhHHHHHHHHH
Confidence 34444445555555555555554442 33455555555555432 233445555555432 455555555544
Q ss_pred hhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHHHhhch---------hhh--hhhhhHHHHHHHHhcCCCHHHHHH
Q 002696 547 MDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN---------EKI--RKYCDMTLLSCAYAGTGNVLKVQN 615 (891)
Q Consensus 547 ~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~L~~~~---------~~i--~r~~~~~~~glAyaGTGn~~~iq~ 615 (891)
.. + .+..+|..+ +.+|..+|.+..++.+++.+.... .+. .|..+ .-+....|+..++..
T Consensus 115 ~~----d-~~~~vR~~a-a~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a----~~~l~~~~~~~~~~~ 184 (335)
T COG1413 115 EN----D-ENEGVRAAA-ARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAA----AEALGELGDPEAIPL 184 (335)
T ss_pred Hc----C-CcHhHHHHH-HHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHH----HHHHHHcCChhhhHH
Confidence 21 1 122333222 334444555555555555554432 111 12221 122334556566666
Q ss_pred HHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhh
Q 002696 616 LLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLS 695 (891)
Q Consensus 616 LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~ 695 (891)
+...+..... +||+.|..+++.+..... .+...|....++.+..+|..++.++|-. +..++++.|....
T Consensus 185 l~~~l~~~~~---~vr~~Aa~aL~~~~~~~~----~~~~~l~~~~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l 253 (335)
T COG1413 185 LIELLEDEDA---DVRRAAASALGQLGSENV----EAADLLVKALSDESLEVRKAALLALGEI----GDEEAVDALAKAL 253 (335)
T ss_pred HHHHHhCchH---HHHHHHHHHHHHhhcchh----hHHHHHHHHhcCCCHHHHHHHHHHhccc----CcchhHHHHHHHH
Confidence 6665544322 688888888888865542 3445555555777888888888888877 7777888888888
Q ss_pred cCCchHHHHHHHHHHH
Q 002696 696 HDTDSEVAMAAVISLG 711 (891)
Q Consensus 696 ~D~d~~Vr~~AiiALG 711 (891)
.+.+..++..+..+++
T Consensus 254 ~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 254 EDEDVILALLAAAALG 269 (335)
T ss_pred hccchHHHHHHHHHhc
Confidence 8888888877766666
No 16
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.10 E-value=0.00027 Score=81.55 Aligned_cols=221 Identities=14% Similarity=0.083 Sum_probs=134.1
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHhhcC-CCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHhh
Q 002696 449 LLGVGIVNCGIRNDCDPALALLSEYVG-REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLG 527 (891)
Q Consensus 449 llaLGli~~G~~~e~d~~l~lL~~~L~-~~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~~L~d~~~~~e~~~~AaLaLG 527 (891)
+-||.++. .. ++..|.+.|. +++.-++..++++|+. ..+..+++.|...|.|+ +..+...++-+||
T Consensus 45 LdgL~~~G----~~---a~~~L~~aL~~d~~~ev~~~aa~al~~----~~~~~~~~~L~~~L~d~--~~~vr~aaa~ALg 111 (410)
T TIGR02270 45 VDGLVLAG----KA---ATELLVSALAEADEPGRVACAALALLA----QEDALDLRSVLAVLQAG--PEGLCAGIQAALG 111 (410)
T ss_pred HHHHHHhh----Hh---HHHHHHHHHhhCCChhHHHHHHHHHhc----cCChHHHHHHHHHhcCC--CHHHHHHHHHHHh
Confidence 55666553 12 6777777774 4555666666666652 23445688888888764 3346667888888
Q ss_pred hhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcC
Q 002696 528 LIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGT 607 (891)
Q Consensus 528 Li~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGT 607 (891)
.+. +.++...++..|.. .++..|.+++ -+|...+ .+..+.++..|. +.+|..|..++-+ +++.|.
T Consensus 112 ~i~----~~~a~~~L~~~L~~------~~p~vR~aal-~al~~r~-~~~~~~L~~~L~-d~d~~Vra~A~ra--LG~l~~ 176 (410)
T TIGR02270 112 WLG----GRQAEPWLEPLLAA------SEPPGRAIGL-AALGAHR-HDPGPALEAALT-HEDALVRAAALRA--LGELPR 176 (410)
T ss_pred cCC----chHHHHHHHHHhcC------CChHHHHHHH-HHHHhhc-cChHHHHHHHhc-CCCHHHHHHHHHH--HHhhcc
Confidence 763 56677676665521 3456666554 2333333 344556666665 5677777665544 455555
Q ss_pred CCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHH
Q 002696 608 GNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNV 687 (891)
Q Consensus 608 Gn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~a 687 (891)
.+ .+..|... ..+.++ .||++|+-|++.+ |.+ .+...+..+....++..+.....++++. +..++
T Consensus 177 ~~--a~~~L~~a-l~d~~~--~VR~aA~~al~~l--G~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~~~a 241 (410)
T TIGR02270 177 RL--SESTLRLY-LRDSDP--EVRFAALEAGLLA--GSR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GGPDA 241 (410)
T ss_pred cc--chHHHHHH-HcCCCH--HHHHHHHHHHHHc--CCH----hHHHHHHHHHhccCccHHHHHHHHHHhC----CchhH
Confidence 43 44445443 333333 7899998888776 443 3334444422333444555555555554 66688
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHc
Q 002696 688 MDTLSRLSHDTDSEVAMAAVISLGLIG 714 (891)
Q Consensus 688 id~L~~l~~D~d~~Vr~~AiiALGlV~ 714 (891)
++.|..+++|+. ||..++.|+|.++
T Consensus 242 ~~~L~~ll~d~~--vr~~a~~AlG~lg 266 (410)
T TIGR02270 242 QAWLRELLQAAA--TRREALRAVGLVG 266 (410)
T ss_pred HHHHHHHhcChh--hHHHHHHHHHHcC
Confidence 999999998866 8889999999774
No 17
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.07 E-value=0.00047 Score=79.56 Aligned_cols=221 Identities=17% Similarity=0.100 Sum_probs=146.6
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHH
Q 002696 486 IMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLG 565 (891)
Q Consensus 486 ~lGLGlay~Gs~~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lg 565 (891)
+=||.. +| +...+.|.+.+.+.. ..++...++++++. ..+..+++.++..|-+. .+...+.++-+
T Consensus 45 LdgL~~--~G---~~a~~~L~~aL~~d~-~~ev~~~aa~al~~----~~~~~~~~~L~~~L~d~-----~~~vr~aaa~A 109 (410)
T TIGR02270 45 VDGLVL--AG---KAATELLVSALAEAD-EPGRVACAALALLA----QEDALDLRSVLAVLQAG-----PEGLCAGIQAA 109 (410)
T ss_pred HHHHHH--hh---HhHHHHHHHHHhhCC-ChhHHHHHHHHHhc----cCChHHHHHHHHHhcCC-----CHHHHHHHHHH
Confidence 556655 44 578899999995322 34665556666542 23445688888876321 23344455444
Q ss_pred HHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcc
Q 002696 566 LGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAE 645 (891)
Q Consensus 566 lgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~ 645 (891)
|.-+|.......++..|. .++|..|.+++ .+|+.-+-. ....++.... |.+ ..||+.|+-++|.+...
T Consensus 110 --Lg~i~~~~a~~~L~~~L~-~~~p~vR~aal--~al~~r~~~---~~~~L~~~L~-d~d--~~Vra~A~raLG~l~~~- 177 (410)
T TIGR02270 110 --LGWLGGRQAEPWLEPLLA-ASEPPGRAIGL--AALGAHRHD---PGPALEAALT-HED--ALVRAAALRALGELPRR- 177 (410)
T ss_pred --HhcCCchHHHHHHHHHhc-CCChHHHHHHH--HHHHhhccC---hHHHHHHHhc-CCC--HHHHHHHHHHHHhhccc-
Confidence 446777788888777774 56888887665 445554433 2334444433 333 38999999999998533
Q ss_pred hhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHH
Q 002696 646 ELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGM 725 (891)
Q Consensus 646 ~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~ 725 (891)
+-++. +.....+.||.||+++.-+++.+ +...+.+.|..+..++...+++.+..++++. |. +++...
T Consensus 178 ----~a~~~-L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~--~~a~~~ 244 (410)
T TIGR02270 178 ----LSEST-LRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GG--PDAQAW 244 (410)
T ss_pred ----cchHH-HHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhccCccHHHHHHHHHHhC--Cc--hhHHHH
Confidence 23333 44557889999999999999988 5578899999988888888776666665555 33 477777
Q ss_pred HHHhhhhhccChhhHHHHHHHHhhh
Q 002696 726 LRNLSSYYYKDANLLFCVRIAQGLV 750 (891)
Q Consensus 726 Lr~l~~~~~~d~~~~f~~~iAqGll 750 (891)
|+++.. ++.++..+..|.|.+
T Consensus 245 L~~ll~----d~~vr~~a~~AlG~l 265 (410)
T TIGR02270 245 LRELLQ----AAATRREALRAVGLV 265 (410)
T ss_pred HHHHhc----ChhhHHHHHHHHHHc
Confidence 777644 566888999999854
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.08 Score=66.46 Aligned_cols=119 Identities=17% Similarity=0.284 Sum_probs=76.8
Q ss_pred hhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCCh----hhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC------
Q 002696 428 SGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC----DPALALLSEYVGREDACIRIGAIMGLGISYAGTQ------ 497 (891)
Q Consensus 428 ~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~----d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~------ 497 (891)
..++.+..++.|++-+-|..|++|||.+.-|..+-+ ++++....++|.++++.||.+||.++|-....-.
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 356777888889999999999999999998875432 3566777788999999999999999998643322
Q ss_pred -CHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhh
Q 002696 498 -NDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMD 548 (891)
Q Consensus 498 -~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~ 548 (891)
++.+...|...+.|+ .+.+++..||-|+== |.--|..++++--+.-||+
T Consensus 428 ~~e~l~~aL~~~ld~~-~~~rV~ahAa~al~n-f~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 428 HHERLPPALIALLDST-QNVRVQAHAAAALVN-FSEECDKSILEPYLDGLME 477 (1075)
T ss_pred HHHhccHHHHHHhccc-CchHHHHHHHHHHHH-HHHhCcHHHHHHHHHHHHH
Confidence 223333444444444 344554444444321 2233444555444444443
No 19
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.73 E-value=3.2e-05 Score=58.12 Aligned_cols=30 Identities=43% Similarity=0.802 Sum_probs=25.9
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHhcCCC
Q 002696 484 GAIMGLGISYAGTQNDQIRHKLSTILNDAK 513 (891)
Q Consensus 484 gA~lGLGlay~Gs~~~~v~e~L~~~L~d~~ 513 (891)
||++|||++|+||+++++++.|.|.+.|++
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~ 30 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTS 30 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSS
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 799999999999999999999999998764
No 20
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.67 E-value=5.9e-05 Score=56.69 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=30.9
Q ss_pred HHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHH
Q 002696 670 AVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAM 704 (891)
Q Consensus 670 ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~ 704 (891)
|++++||++|||+++.++++.|.++.+|++..++|
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~~~~~~ 35 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTSNEMIQ 35 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSSHHHHH
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhccccccC
Confidence 68999999999999999999999999999998875
No 21
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.64 E-value=0.022 Score=63.75 Aligned_cols=264 Identities=22% Similarity=0.213 Sum_probs=178.9
Q ss_pred hhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 002696 428 SGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLST 507 (891)
Q Consensus 428 ~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~ 507 (891)
++...+.+++.+.+..+|.+|...+|.+.. ..++..|...+.+.+..+|..|+.+||-. ++++.+..|.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------~~av~~l~~~l~d~~~~vr~~a~~aLg~~----~~~~a~~~li~ 112 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS------EEAVPLLRELLSDEDPRVRDAAADALGEL----GDPEAVPPLVE 112 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc----CChhHHHHHHH
Confidence 345556677777789999999999887743 23888899999999999999999988863 56788888888
Q ss_pred Hhc-CCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCc------cccCchhHHHHHHHHHhhhcCChhhHHHH
Q 002696 508 ILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSE------SELGEPLTRLIPLGLGLLYLGKQESVEAT 580 (891)
Q Consensus 508 ~L~-d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~------t~l~e~~~r~~~lglgLl~lG~~e~~~~l 580 (891)
.+. |. +.-+...|+.+||-+. +...+..++..+.+... -.......|+.+ ..+|..+|.++....+
T Consensus 113 ~l~~d~--~~~vR~~aa~aL~~~~----~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a-~~~l~~~~~~~~~~~l 185 (335)
T COG1413 113 LLENDE--NEGVRAAAARALGKLG----DERALDPLLEALQDEDSGSAAAALDAALLDVRAAA-AEALGELGDPEAIPLL 185 (335)
T ss_pred HHHcCC--cHhHHHHHHHHHHhcC----chhhhHHHHHHhccchhhhhhhhccchHHHHHHHH-HHHHHHcCChhhhHHH
Confidence 887 44 4455668889998764 55567777776532110 000111234333 4567778889998888
Q ss_pred HHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHh
Q 002696 581 AEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLL 660 (891)
Q Consensus 581 i~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~ 660 (891)
++.+.... +..|..++ .+++..|..+...+..+.. ..++.+. .+|..++.++|-+.+ +.+...+-...
T Consensus 186 ~~~l~~~~-~~vr~~Aa--~aL~~~~~~~~~~~~~l~~-~~~~~~~--~vr~~~~~~l~~~~~------~~~~~~l~~~l 253 (335)
T COG1413 186 IELLEDED-ADVRRAAA--SALGQLGSENVEAADLLVK-ALSDESL--EVRKAALLALGEIGD------EEAVDALAKAL 253 (335)
T ss_pred HHHHhCch-HHHHHHHH--HHHHHhhcchhhHHHHHHH-HhcCCCH--HHHHHHHHHhcccCc------chhHHHHHHHH
Confidence 88887643 35555444 4455556565344444444 3344443 788889888888754 44566666777
Q ss_pred hcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHH
Q 002696 661 QYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGML 726 (891)
Q Consensus 661 ~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~L 726 (891)
++.++.+|.....+++ +..-....-.+....+|.+..++..+..+++.++ +.+.+.+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~a~~~ 313 (335)
T COG1413 254 EDEDVILALLAAAALG----ALDLAEAALPLLLLLIDEANAVRLEAALALGQIG--QEKAVAALLL 313 (335)
T ss_pred hccchHHHHHHHHHhc----ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhc--ccchHHHHHH
Confidence 8888889988888888 3345555666778888888888988888888774 4444444333
No 22
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.63 E-value=0.00022 Score=63.50 Aligned_cols=86 Identities=27% Similarity=0.319 Sum_probs=48.6
Q ss_pred HHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHH
Q 002696 614 QNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 693 (891)
Q Consensus 614 q~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~ 693 (891)
..|++.+.++.+. .+|..++-.+|-+ ++ +.+...+..++.+.||.||+.++.|||-+ ++.++++.|.+
T Consensus 2 ~~L~~~l~~~~~~--~vr~~a~~~L~~~--~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~~~~~~~L~~ 69 (88)
T PF13646_consen 2 PALLQLLQNDPDP--QVRAEAARALGEL--GD----PEAIPALIELLKDEDPMVRRAAARALGRI----GDPEAIPALIK 69 (88)
T ss_dssp HHHHHHHHTSSSH--HHHHHHHHHHHCC--TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HHHHTHHHHHH
T ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHc--CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHH
Confidence 3455555333332 5666666666622 22 33444444444666777777777777765 45667776666
Q ss_pred hhcC-CchHHHHHHHHHHH
Q 002696 694 LSHD-TDSEVAMAAVISLG 711 (891)
Q Consensus 694 l~~D-~d~~Vr~~AiiALG 711 (891)
+..| .+..||..|+-|||
T Consensus 70 ~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTC-SSHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhcC
Confidence 5444 44556776766665
No 23
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.0057 Score=65.54 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhh-cCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 002696 650 EMAIRSLEHLLQ-YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 715 (891)
Q Consensus 650 e~~~~~l~~L~~-~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~a 715 (891)
..++.+...|.. .-+|.||.-++.|||-+ ++.++++.|.++++|+++-||..+.+|+-|.--
T Consensus 218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaI----a~e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 218 AAIPSLIKVLLDETEHPMVRHEAAEALGAI----ADEDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred hhhHHHHHHHHhhhcchHHHHHHHHHHHhh----cCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 445555555543 34699999999999988 899999999999999999999999999988743
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.50 E-value=0.00068 Score=60.29 Aligned_cols=87 Identities=26% Similarity=0.225 Sum_probs=68.1
Q ss_pred HHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhh
Q 002696 653 IRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSY 732 (891)
Q Consensus 653 ~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~Lr~l~~~ 732 (891)
+.++..|..+.|+.+|..++.+||-. ++.++++.|..+.+|++..||+.|+.|+|-++ +++....|.++...
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL----GDPEAIPALIELLKDEDPMVRRAAARALGRIG----DPEAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC----THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----HHHTHHHHHHHHTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHcC
Confidence 55677777889999999999999954 78899999999999999999999999999884 45666666664332
Q ss_pred hccChhhHHHHHHHHh
Q 002696 733 YYKDANLLFCVRIAQG 748 (891)
Q Consensus 733 ~~~d~~~~f~~~iAqG 748 (891)
..+...+..+.-|+|
T Consensus 74 -~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 74 -DDDEVVREAAAEALG 88 (88)
T ss_dssp --SSHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHhhcC
Confidence 234556777766665
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.90 E-value=0.35 Score=65.29 Aligned_cols=280 Identities=15% Similarity=0.085 Sum_probs=169.7
Q ss_pred hhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChh-----hHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH--
Q 002696 427 DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD-----PALALLSEYVGREDACIRIGAIMGLGISYAGTQND-- 499 (891)
Q Consensus 427 ~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d-----~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~-- 499 (891)
.++...|-..|...+..++.-++.+|..+..|..+... -.+..|.+.|.+++..++..|+..||.+..|+.+.
T Consensus 403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 403 AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34566666677777788888888888877765221100 14567788888888888888888999887765421
Q ss_pred -----HHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCC-HH------HHHHHHHHHhhcCccccCchhHHHHHHHHH
Q 002696 500 -----QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN-EE------VAQAIIFALMDRSESELGEPLTRLIPLGLG 567 (891)
Q Consensus 500 -----~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n-~~------~~e~ll~~L~~~~~t~l~e~~~r~~~lglg 567 (891)
..+..|...|..+ +.+++.-|+.+||-+-.++.+ .. ++..|++.|.. . ..+..+-++-++.
T Consensus 483 aIieaGaIP~LV~LL~s~--~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s-g----d~~~q~~Aa~AL~ 555 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETG--SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN-G----GPKGQEIAAKTLT 555 (2102)
T ss_pred HHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC-C----CHHHHHHHHHHHH
Confidence 2356677777643 335556788888876543322 11 23344554421 1 2234445555554
Q ss_pred -hhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHh-cCC---------CHHHHHHHHhhhhccCCCCccchhHHHH
Q 002696 568 -LLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYA-GTG---------NVLKVQNLLGHCAQHHEKGEAYQGPAVL 636 (891)
Q Consensus 568 -Ll~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAya-GTG---------n~~~iq~LL~~~~~~~~d~~~vrr~avl 636 (891)
|+.-|..+.+..+++.|...+ +-.+....-+++.... +.+ +...++.|.+...+. ++ .++..|+-
T Consensus 556 nLi~~~d~~~I~~Lv~LLlsdd-~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~--~ikk~Aa~ 631 (2102)
T PLN03200 556 KLVRTADAATISQLTALLLGDL-PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KE--ETQEKAAS 631 (2102)
T ss_pred HHHhccchhHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CH--HHHHHHHH
Confidence 445566666666666655433 2222222222222211 111 123455555554433 32 78888888
Q ss_pred HhHHhhhcchhh------HHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHH--------HHHHHHHhhcCCchHH
Q 002696 637 GIAMVAMAEELG------LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVN--------VMDTLSRLSHDTDSEV 702 (891)
Q Consensus 637 glglI~~~~~~g------~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~--------aid~L~~l~~D~d~~V 702 (891)
.|+-+..+++-- .+.++.++.+| ++++..+|+.++.||+-++.+....+ ++..|-.+.++++..+
T Consensus 632 iLsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v 710 (2102)
T PLN03200 632 VLADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEV 710 (2102)
T ss_pred HHHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHH
Confidence 888888777510 12345566655 67888899999999987764333222 2455777789999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 002696 703 AMAAVISLGLIGSGTN 718 (891)
Q Consensus 703 r~~AiiALGlV~aGtn 718 (891)
+..|.-|++.+.....
T Consensus 711 ~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 711 AEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHHHHHHHHHHcCch
Confidence 9999999998887553
No 26
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.1 Score=61.37 Aligned_cols=243 Identities=16% Similarity=0.187 Sum_probs=162.2
Q ss_pred HHHHhhcC-CCCHHHHHHHHHHHHHHhccCCCH-------HHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCC----
Q 002696 468 ALLSEYVG-REDACIRIGAIMGLGISYAGTQND-------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN---- 535 (891)
Q Consensus 468 ~lL~~~L~-~~~~~v~~gA~lGLGlay~Gs~~~-------~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n---- 535 (891)
..|.+.+. +.++.++.-|+-+|-=+..||... ..+-.+...+.++ +.+++..|..|||-|. |-+.
T Consensus 112 ~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~--~~~v~eQavWALgNIa-gds~~~Rd 188 (514)
T KOG0166|consen 112 PRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP--SADVREQAVWALGNIA-GDSPDCRD 188 (514)
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC--cHHHHHHHHHHHhccc-cCChHHHH
Confidence 34455554 455788888888888877777632 2334455555544 4566778999999884 5442
Q ss_pred ----HHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCCh-----hhHHHHHHHHh---hchhhhhhhhhHHHHHHH
Q 002696 536 ----EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ-----ESVEATAEVSK---TFNEKIRKYCDMTLLSCA 603 (891)
Q Consensus 536 ----~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~-----e~~~~li~~L~---~~~~~i~r~~~~~~~glA 603 (891)
..+.+.++..+... . ...+.|-+.-.+.-++-|+. +.+..++..|. ...|+.... -.+.+++
T Consensus 189 ~vl~~g~l~pLl~~l~~~--~--~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~--Da~WAls 262 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKS--D--KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLT--DACWALS 262 (514)
T ss_pred HHHhhcchHHHHHHhccc--c--chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHH
Confidence 12345555544211 1 23577888888999998986 55665555544 344554443 3345688
Q ss_pred HhcCCCHHHHHHHHhh--------hhccCCCCccchhHHHHHhHHhhhcchhhHHH-----HHHHHHHHhh-cCChhHHh
Q 002696 604 YAGTGNVLKVQNLLGH--------CAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM-----AIRSLEHLLQ-YGEQNIRR 669 (891)
Q Consensus 604 yaGTGn~~~iq~LL~~--------~~~~~~d~~~vrr~avlglglI~~~~~~g~e~-----~~~~l~~L~~-~~np~VR~ 669 (891)
|.-=|.++.||.++.. +-.+.+. .++-.|+-++|=|..|++.-.+. +.+.|..|+. ++..+||.
T Consensus 263 yLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikk 340 (514)
T KOG0166|consen 263 YLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKK 340 (514)
T ss_pred HHhcCChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHH
Confidence 9988888888865432 2234443 68888999999999999832222 2234455554 77788999
Q ss_pred HHHHHhhhhccCCC-------cHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchH
Q 002696 670 AVPLALGLLCISNP-------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNAR 721 (891)
Q Consensus 670 ga~lALGL~~aGt~-------~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~r 721 (891)
-+|.++.=+.|||. +..++..|-.+.+..+-..|.-|..|++=..+|.+...
T Consensus 341 EAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~q 399 (514)
T KOG0166|consen 341 EACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQ 399 (514)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHH
Confidence 99999999999998 33445566667777777789999999998888877433
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.77 E-value=0.094 Score=62.12 Aligned_cols=291 Identities=16% Similarity=0.140 Sum_probs=161.9
Q ss_pred HHHHHHHhcccccccchh---hHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHH
Q 002696 411 KMSAAASLGMILLWDVDS---GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIM 487 (891)
Q Consensus 411 k~sA~aslGlI~~~~~~~---~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~l 487 (891)
|-.+-.++..+...+.+. +.+.|.+-|.++++++++-||=.++-+.. ..-.+++...+...+.++++.+|..|++
T Consensus 59 Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~l~~~v~~ll~~~~~~VRk~A~~ 136 (526)
T PF01602_consen 59 KRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEPLIPDVIKLLSDPSPYVRKKAAL 136 (526)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhHHHHHHHHHhcCCchHHHHHHHH
Confidence 333334444444434442 23445566778999999999999998863 1112345556667788899999999999
Q ss_pred HHHHHhccCCC--HH-HHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHH----HHHHHHHHhhcCccccCchhHH
Q 002696 488 GLGISYAGTQN--DQ-IRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEV----AQAIIFALMDRSESELGEPLTR 560 (891)
Q Consensus 488 GLGlay~Gs~~--~~-v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~----~e~ll~~L~~~~~t~l~e~~~r 560 (891)
++.-+|-...+ ++ +.+.|...+.|++ ..+...|..++.-+ .++++. ...+...|...- . ..++|.+
T Consensus 137 ~l~~i~~~~p~~~~~~~~~~l~~lL~d~~--~~V~~~a~~~l~~i---~~~~~~~~~~~~~~~~~L~~~l-~-~~~~~~q 209 (526)
T PF01602_consen 137 ALLKIYRKDPDLVEDELIPKLKQLLSDKD--PSVVSAALSLLSEI---KCNDDSYKSLIPKLIRILCQLL-S-DPDPWLQ 209 (526)
T ss_dssp HHHHHHHHCHCCHHGGHHHHHHHHTTHSS--HHHHHHHHHHHHHH---HCTHHHHTTHHHHHHHHHHHHH-T-CCSHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHH---ccCcchhhhhHHHHHHHhhhcc-c-ccchHHH
Confidence 99999865332 12 6777777777653 45555666666655 445544 333333332110 1 1456766
Q ss_pred HHHHHHHhhhcCCh--hhH--HHHHHHHhh---chhhhhhhhhHHHHHHHHhcCCC--HHHHHHHHhhhhccCCCCccch
Q 002696 561 LIPLGLGLLYLGKQ--ESV--EATAEVSKT---FNEKIRKYCDMTLLSCAYAGTGN--VLKVQNLLGHCAQHHEKGEAYQ 631 (891)
Q Consensus 561 ~~~lglgLl~lG~~--e~~--~~li~~L~~---~~~~i~r~~~~~~~glAyaGTGn--~~~iq~LL~~~~~~~~d~~~vr 631 (891)
...+-+- ..+.+. +.. ..+++.+.. ...+-..+.++-++. .+...-. ..+++.|..+..+. + .++|
T Consensus 210 ~~il~~l-~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~-~l~~~~~~~~~~~~~L~~lL~s~-~--~nvr 284 (526)
T PF01602_consen 210 IKILRLL-RRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLII-KLSPSPELLQKAINPLIKLLSSS-D--PNVR 284 (526)
T ss_dssp HHHHHHH-TTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSSSHHHHHHHHHHHHHHHTSS-S--HHHH
T ss_pred HHHHHHH-HhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHH-HhhcchHHHHhhHHHHHHHhhcc-c--chhe
Confidence 5544332 233332 222 234444332 223333332222111 1111111 24566666666532 2 2678
Q ss_pred hHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCC-chHHHHHHHHHH
Q 002696 632 GPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT-DSEVAMAAVISL 710 (891)
Q Consensus 632 r~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~-d~~Vr~~AiiAL 710 (891)
..++-.+..+....+-.-....-.+..+..+.|+.||.-+.-.|-.++--++-..+++.|.++.++. +.+++..++-++
T Consensus 285 ~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I 364 (526)
T PF01602_consen 285 YIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAI 364 (526)
T ss_dssp HHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred hhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHH
Confidence 7887778888777631111111122333346788998877766666655555567788888888665 666888877777
Q ss_pred HHHcC
Q 002696 711 GLIGS 715 (891)
Q Consensus 711 GlV~a 715 (891)
+-+..
T Consensus 365 ~~la~ 369 (526)
T PF01602_consen 365 GDLAE 369 (526)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76553
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.75 E-value=0.097 Score=61.99 Aligned_cols=288 Identities=18% Similarity=0.079 Sum_probs=155.8
Q ss_pred cchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHH
Q 002696 425 DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHK 504 (891)
Q Consensus 425 ~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~~v~e~ 504 (891)
+++.++..+-+++.+.+...|--+.+++..+.....+..--+.+.|..-+.++++.+|.-|+-.|+-+. .+++.+.
T Consensus 39 ~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~ 114 (526)
T PF01602_consen 39 DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEP 114 (526)
T ss_dssp --GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHH
T ss_pred CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhH
Confidence 555566666777778888888888888888765432111113345556688899999988888887753 5666666
Q ss_pred HHHHh----cCCCCchHHHHHHHHHhhhhhcCCCCH--H-HHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCCh---
Q 002696 505 LSTIL----NDAKSPLDVIAFSAISLGLIYVGSCNE--E-VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ--- 574 (891)
Q Consensus 505 L~~~L----~d~~~~~e~~~~AaLaLGLi~lGs~n~--~-~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~--- 574 (891)
+.+.+ .|+ +..+...|++++..+|--..+. . ..+.+.+.|. + .++.++..++.+-.-.-...
T Consensus 115 l~~~v~~ll~~~--~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~---d---~~~~V~~~a~~~l~~i~~~~~~~ 186 (526)
T PF01602_consen 115 LIPDVIKLLSDP--SPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLS---D---KDPSVVSAALSLLSEIKCNDDSY 186 (526)
T ss_dssp HHHHHHHHHHSS--SHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTT---H---SSHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHhcCC--chHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhcc---C---CcchhHHHHHHHHHHHccCcchh
Confidence 55554 454 4477889999999998553321 1 2333333321 1 23444444432211110111
Q ss_pred -hhHHHHHHHHh---hchhhhhhhhhHHHHHHHHhcCCCHHH------HHHHHhhhhccCCCCccchhHHHHHhHHhhhc
Q 002696 575 -ESVEATAEVSK---TFNEKIRKYCDMTLLSCAYAGTGNVLK------VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMA 644 (891)
Q Consensus 575 -e~~~~li~~L~---~~~~~i~r~~~~~~~glAyaGTGn~~~------iq~LL~~~~~~~~d~~~vrr~avlglglI~~~ 644 (891)
.....++..|. ...+|+.... +...+......+... ++.++....+. +. .|.-.++-.+.-+...
T Consensus 187 ~~~~~~~~~~L~~~l~~~~~~~q~~--il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~-~~--~V~~e~~~~i~~l~~~ 261 (526)
T PF01602_consen 187 KSLIPKLIRILCQLLSDPDPWLQIK--ILRLLRRYAPMEPEDADKNRIIEPLLNLLQSS-SP--SVVYEAIRLIIKLSPS 261 (526)
T ss_dssp TTHHHHHHHHHHHHHTCCSHHHHHH--HHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHSSS
T ss_pred hhhHHHHHHHhhhcccccchHHHHH--HHHHHHhcccCChhhhhHHHHHHHHHHHhhcc-cc--HHHHHHHHHHHHhhcc
Confidence 23455556555 3455654432 222233333333222 23333322211 11 3433333333333322
Q ss_pred chhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCC-CcHHHHHH-HHHhhcCCchHHHHHHHHHHHHHcCCCCchHH
Q 002696 645 EELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISN-PKVNVMDT-LSRLSHDTDSEVAMAAVISLGLIGSGTNNARI 722 (891)
Q Consensus 645 ~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt-~~~~aid~-L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~rv 722 (891)
.+ -...+...+..++.+.++++|+.+.-++..+...+ +...-... +..+..|.|..||..|+--+..+ .++..+
T Consensus 262 ~~-~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l---~~~~n~ 337 (526)
T PF01602_consen 262 PE-LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKL---ANESNV 337 (526)
T ss_dssp HH-HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-----HHHH
T ss_pred hH-HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhc---ccccch
Confidence 22 12455566666777889999999999998887666 22221112 23334588999998665544444 344455
Q ss_pred HHHHHHhhhhh
Q 002696 723 AGMLRNLSSYY 733 (891)
Q Consensus 723 ~~~Lr~l~~~~ 733 (891)
..++..|.+|.
T Consensus 338 ~~Il~eL~~~l 348 (526)
T PF01602_consen 338 KEILDELLKYL 348 (526)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 56666666665
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=96.72 E-value=0.55 Score=58.49 Aligned_cols=272 Identities=15% Similarity=0.118 Sum_probs=135.3
Q ss_pred HHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC----CHHHHHHH
Q 002696 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ----NDQIRHKL 505 (891)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~----~~~v~e~L 505 (891)
.+.|.+-+.++++.+|+-||=.+|.|.... -.+.+...+...+.+++++||-.|++++.-+|--.. .....+.|
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~~~--i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L 184 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRVSS--VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDL 184 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHH
Confidence 344555667889999999999999874321 123345555667788999999999999999886543 22456777
Q ss_pred HHHhcCCCCchHHHHHHHHHhhhhhcCCCC-HHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCC--hhhHHHHHH
Q 002696 506 STILNDAKSPLDVIAFSAISLGLIYVGSCN-EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGK--QESVEATAE 582 (891)
Q Consensus 506 ~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n-~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~--~e~~~~li~ 582 (891)
...|.|++.. |...|..+|=-|.--..+ -+.....+..|...- .+ -++|.+...+-+ |..+.. .+.+..+++
T Consensus 185 ~~LL~D~dp~--Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L-~e-~~EW~Qi~IL~l-L~~y~P~~~~e~~~il~ 259 (746)
T PTZ00429 185 VELLNDNNPV--VASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHL-PE-CNEWGQLYILEL-LAAQRPSDKESAETLLT 259 (746)
T ss_pred HHHhcCCCcc--HHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHh-hc-CChHHHHHHHHH-HHhcCCCCcHHHHHHHH
Confidence 7777776433 333344434333210000 011122222222211 11 245766654432 222322 223444555
Q ss_pred HHhh---chhhhhhhhhHHHHHHHHhcCCCHHHHHH--------HHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHH
Q 002696 583 VSKT---FNEKIRKYCDMTLLSCAYAGTGNVLKVQN--------LLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM 651 (891)
Q Consensus 583 ~L~~---~~~~i~r~~~~~~~glAyaGTGn~~~iq~--------LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~ 651 (891)
.+.. ..++-.-.+++=+ -+.+.-..+...++. |+.. .+. + .++|-.+.-.|-+|....| ..
T Consensus 260 ~l~~~Lq~~N~AVVl~Aik~-il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss-~--~eiqyvaLr~I~~i~~~~P---~l 331 (746)
T PTZ00429 260 RVLPRMSHQNPAVVMGAIKV-VANLASRCSQELIERCTVRVNTALLTL-SRR-D--AETQYIVCKNIHALLVIFP---NL 331 (746)
T ss_pred HHHHHhcCCCHHHHHHHHHH-HHHhcCcCCHHHHHHHHHHHHHHHHHh-hCC-C--ccHHHHHHHHHHHHHHHCH---HH
Confidence 4432 1122111111100 011111112222222 1222 111 1 1455555556667766665 33
Q ss_pred HHHHHHHH-hhcCCh-hHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 002696 652 AIRSLEHL-LQYGEQ-NIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (891)
Q Consensus 652 ~~~~l~~L-~~~~np-~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aG 716 (891)
....+..+ ..+.|| +||.-.-=.|-.++-.++-.++++-|..++.|.|..+++.||-|+|-+...
T Consensus 332 f~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 332 LRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 33333333 334443 344433333333334444456777777888888888888888888877654
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.50 E-value=0.55 Score=63.52 Aligned_cols=270 Identities=16% Similarity=0.092 Sum_probs=168.3
Q ss_pred cchhhHHHHHHHhcccccccch--------hhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChh------hHHHHHH
Q 002696 406 NKEHGKMSAAASLGMILLWDVD--------SGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD------PALALLS 471 (891)
Q Consensus 406 ~~~~~k~sA~aslGlI~~~~~~--------~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d------~~l~lL~ 471 (891)
.+.-.+-.|+..+|.|-.++.+ +++..|-+.|.+++..++--|+-+||-+.++.. +.. -++..|.
T Consensus 458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~-qir~iV~~aGAIppLV 536 (2102)
T PLN03200 458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSE-DIRACVESAGAVPALL 536 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHHCCCHHHHH
Confidence 3344556667777777665543 367788888888899999999999998776321 100 1455667
Q ss_pred hhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhh-cCCCC---------HHHHHH
Q 002696 472 EYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIY-VGSCN---------EEVAQA 541 (891)
Q Consensus 472 ~~L~~~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~-lGs~n---------~~~~e~ 541 (891)
+.|.+.+...+.-|+-+|.-...+ .+.+.+..|...+..++.... ..+.-++|-+. ++.++ ...++.
T Consensus 537 ~LL~sgd~~~q~~Aa~AL~nLi~~-~d~~~I~~Lv~LLlsdd~~~~--~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~ 613 (2102)
T PLN03200 537 WLLKNGGPKGQEIAAKTLTKLVRT-ADAATISQLTALLLGDLPESK--VHVLDVLGHVLSVASLEDLVREGSAANDALRT 613 (2102)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhc-cchhHHHHHHHHhcCCChhHH--HHHHHHHHHHHhhcchhHHHHHhhhccccHHH
Confidence 778888777887888888776444 345666777777653322222 23444666553 22332 124455
Q ss_pred HHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHH---------HHHHHHhhchhhhhhhhhHHHHHHHHh-cCCCH-
Q 002696 542 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE---------ATAEVSKTFNEKIRKYCDMTLLSCAYA-GTGNV- 610 (891)
Q Consensus 542 ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~---------~li~~L~~~~~~i~r~~~~~~~glAya-GTGn~- 610 (891)
|.+.|. ++ ++.+.+-++-.++=++-|+++.++ .++..|..-+.++.+. ++++++-.+- |+.+.
T Consensus 614 Lv~LL~--sg---s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~ke-AA~AL~nL~~~~~~~q~ 687 (2102)
T PLN03200 614 LIQLLS--SS---KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQ-SARALAALSRSIKENRK 687 (2102)
T ss_pred HHHHHc--CC---CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHH-HHHHHHHHHhCCCHHHH
Confidence 555442 22 356777777788888888887544 4566666555555555 4555444433 33221
Q ss_pred -H-----HHHHHHhhhhccCCCCccchhHHHHHhHHhhhcch----hhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhcc
Q 002696 611 -L-----KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEE----LGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCI 680 (891)
Q Consensus 611 -~-----~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~----~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~a 680 (891)
. +|..|.....+. +. +++..++-+++.++...+ ++.+.+...+-.+++.+++..|..++.||.-+|-
T Consensus 688 ~~~v~~GaV~pL~~LL~~~-d~--~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 688 VSYAAEDAIKPLIKLAKSS-SI--EVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred HHHHHcCCHHHHHHHHhCC-Ch--HHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 1 233455555432 22 688889999999887554 2222334455566799999999999999999998
Q ss_pred CCCcHHHH
Q 002696 681 SNPKVNVM 688 (891)
Q Consensus 681 Gt~~~~ai 688 (891)
+.+..+++
T Consensus 765 ~~~~~~~~ 772 (2102)
T PLN03200 765 HFPVDDVL 772 (2102)
T ss_pred CCChhHHH
Confidence 87766543
No 31
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.46 E-value=3.7 Score=50.64 Aligned_cols=254 Identities=14% Similarity=0.085 Sum_probs=123.4
Q ss_pred ccccccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH
Q 002696 420 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND 499 (891)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~ 499 (891)
....++.++++..+.+.+....... .+...+|.++.... +.+.++..+...+....... .+...++.++.-.++.
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPDSA--LALLLLADAYAVMK-NYAKAITSLKRALELKPDNT--EAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCH
Confidence 3456788888887777654322222 34445555543222 22346777666655332211 2334455555544444
Q ss_pred H-HHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHH
Q 002696 500 Q-IRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 578 (891)
Q Consensus 500 ~-v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~ 578 (891)
+ ..+.+............ .-..+|.++...++-+.+...+.......++ . .....++..+...|+.+++.
T Consensus 686 ~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPKAAL----GFELEGDLYLRQKDYPAAIQAYRKALKRAPS---S--QNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHHHHHHHHHhhCcCChH----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---c--hHHHHHHHHHHHCCCHHHHH
Confidence 3 33333333321111112 3345667776677665554555444333222 1 22334555666678877777
Q ss_pred HHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHH
Q 002696 579 ATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 658 (891)
Q Consensus 579 ~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~ 658 (891)
..++........ .......++..|...|+.......+..+.....+ +....--++......++ ..+...+..
T Consensus 757 ~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~----~~A~~~~~~ 828 (899)
T TIGR02917 757 KTLEAWLKTHPN--DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD--NAVVLNNLAWLYLELKD----PRALEYAEK 828 (899)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCc----HHHHHHHHH
Confidence 776665543221 1234566778888899976655555544432221 22222222333333333 235555555
Q ss_pred Hhhc--CChhHHhHHHHHhhhhccCCCc-HHHHHHHHHhh-cCCc
Q 002696 659 LLQY--GEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTD 699 (891)
Q Consensus 659 L~~~--~np~VR~ga~lALGL~~aGt~~-~~aid~L~~l~-~D~d 699 (891)
.... .+|.+. ..+|.++...++ .+++..+.+.. .+|+
T Consensus 829 ~~~~~~~~~~~~----~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 829 ALKLAPNIPAIL----DTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHhhCCCCcHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5432 233332 234444444443 35677777764 3443
No 32
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.43 E-value=3.8 Score=50.51 Aligned_cols=304 Identities=15% Similarity=0.117 Sum_probs=158.6
Q ss_pred cccccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-H
Q 002696 421 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-D 499 (891)
Q Consensus 421 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~-~ 499 (891)
...|+.++++..+...+........ +...+|.++.... +.+.++..+...+...... ..+...+|.+|.-.++ +
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPE--AWLMLGRAQLAAG-DLNKAVSSFKKLLALQPDS--ALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHH
Confidence 3457888888888877654333333 3344444443222 2233666666555422111 1234455666644443 3
Q ss_pred HHHHHHHHHhc-CCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHH
Q 002696 500 QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 578 (891)
Q Consensus 500 ~v~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~ 578 (891)
+..+.+...+. ++. ..+ +.+.++.++.-.++.+.+..+++.+.+..+. +. .....+|..+...|+-+.+-
T Consensus 653 ~A~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 653 KAITSLKRALELKPD-NTE----AQIGLAQLLLAAKRTESAKKIAKSLQKQHPK---AA-LGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHHHHHHHHHhcCCC-CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---Ch-HHHHHHHHHHHHCCCHHHHH
Confidence 45555555554 221 222 4455566666666666666666666543221 11 12233444555567767766
Q ss_pred HHHHHHhhc-hhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHH
Q 002696 579 ATAEVSKTF-NEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLE 657 (891)
Q Consensus 579 ~li~~L~~~-~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~ 657 (891)
..++..... +++ .....++.+|...|+.....+.+.-+.+...+ ++.....+|..+...|+. +.+...+.
T Consensus 724 ~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~---~~A~~~~~ 794 (899)
T TIGR02917 724 QAYRKALKRAPSS----QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN--DAVLRTALAELYLAQKDY---DKAIKHYR 794 (899)
T ss_pred HHHHHHHhhCCCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCcCH---HHHHHHHH
Confidence 666654432 222 34556778888999976555544443332222 445555555556666776 88888888
Q ss_pred HHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHHhhhhhcc
Q 002696 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRNLSSYYYK 735 (891)
Q Consensus 658 ~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~-D~d~~Vr~~AiiALGlV~aGtnn-~rv~~~Lr~l~~~~~~ 735 (891)
.+.+....+.. +-..+|.++...++.++++.+++... +|++.. ....+|.+....++ .+....+++..+....
T Consensus 795 ~~~~~~p~~~~--~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 795 TVVKKAPDNAV--VLNNLAWLYLELKDPRALEYAEKALKLAPNIPA---ILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHhCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88765432222 22333444444455778888887643 444332 23345666555554 2344555554442222
Q ss_pred ChhhHHHHHHHHhhhhcCC
Q 002696 736 DANLLFCVRIAQGLVHMGK 754 (891)
Q Consensus 736 d~~~~f~~~iAqGll~~G~ 754 (891)
++ .....+++.+...|+
T Consensus 870 ~~--~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 870 AA--AIRYHLALALLATGR 886 (899)
T ss_pred Ch--HHHHHHHHHHHHcCC
Confidence 33 334456666666654
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.03 E-value=3.6 Score=46.40 Aligned_cols=281 Identities=14% Similarity=0.076 Sum_probs=146.6
Q ss_pred cccccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCC--HHHHHHHHHHHHHHhccCCC
Q 002696 421 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED--ACIRIGAIMGLGISYAGTQN 498 (891)
Q Consensus 421 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~--~~v~~gA~lGLGlay~Gs~~ 498 (891)
+..++.++++..+.+.+...... ..+...+|.++....+ .+.++..+...+..+. .....-+...||.+|...++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPET--VELHLALGNLFRRRGE-VDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCc-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 45578888888888877543333 2455666665543322 2347777666665432 23334566778888887665
Q ss_pred H-HHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHH-HHHHHHhhhcCChhh
Q 002696 499 D-QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRL-IPLGLGLLYLGKQES 576 (891)
Q Consensus 499 ~-~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~-~~lglgLl~lG~~e~ 576 (891)
- +..+.+...+....... .+-..++.++.-.++.+-+..++..+....+.........+ ..+|..+...|+-+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAE----GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HHHHHHHHHHHHcCCcchH----HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 4 34444544443211111 34556677777777665555555555433222101111111 223333344466666
Q ss_pred HHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHH
Q 002696 577 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 656 (891)
Q Consensus 577 ~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l 656 (891)
+...++.+....... ....+.+|..|...|+.....+++.-+.+...+ ........++-++...|+. +.+.+.+
T Consensus 199 A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~g~~---~~A~~~l 272 (389)
T PRK11788 199 ARALLKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPE-YLSEVLPKLMECYQALGDE---AEGLEFL 272 (389)
T ss_pred HHHHHHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh-hHHHHHHHHHHHHHHcCCH---HHHHHHH
Confidence 766666654432211 224567888899999966555555544432111 0111223445556666666 7777787
Q ss_pred HHHhhcCChhHHhHHHHHhhhhccCCCcH-HHHHHHHHh-hcCCchHHHHHHHHHHHHHcCCCC
Q 002696 657 EHLLQYGEQNIRRAVPLALGLLCISNPKV-NVMDTLSRL-SHDTDSEVAMAAVISLGLIGSGTN 718 (891)
Q Consensus 657 ~~L~~~~np~VR~ga~lALGL~~aGt~~~-~aid~L~~l-~~D~d~~Vr~~AiiALGlV~aGtn 718 (891)
..+.+. +|..... ..+|.++...++. +++..|.+. ..+|++. ....+++..+..++.+
T Consensus 273 ~~~~~~-~p~~~~~--~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 273 RRALEE-YPGADLL--LALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHh-CCCchHH--HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCc
Confidence 776553 3433222 4455554444433 466677655 3456553 3444555555444433
No 34
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.98 E-value=0.47 Score=51.38 Aligned_cols=238 Identities=15% Similarity=0.139 Sum_probs=135.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 002696 467 LALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFAL 546 (891)
Q Consensus 467 l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L 546 (891)
++.+.+...+.+.-..|-.++.||= .++++.+..|..++.|.+...-+.+-||-+||-++ ..+..+.+-.+.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ----~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~----~~~~~~~l~k~~ 109 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQ----MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----DPESLEILTKYI 109 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhh----hccchhhHHHHHHhcccccchHHHHHHHHHHHhhc----chhhHHHHHHHh
Confidence 4555555555566666666666665 35667777777777776555556667788888765 344444444442
Q ss_pred hhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHH--HhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccC
Q 002696 547 MDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEV--SKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHH 624 (891)
Q Consensus 547 ~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~--L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~ 624 (891)
+ ++ .-++...+-+++. .+...+..+...+. ... .||-.+ +.++++..++..|-- .+.
T Consensus 110 -~-dp---~~~v~ETc~lAi~--rle~~~~~~~~~~~~p~~S-vdPa~p-----------~~~ssv~~lr~~lld--~t~ 168 (289)
T KOG0567|consen 110 -K-DP---CKEVRETCELAIK--RLEWKDIIDKIANSSPYIS-VDPAPP-----------ANLSSVHELRAELLD--ETK 168 (289)
T ss_pred -c-CC---ccccchHHHHHHH--HHHHhhccccccccCcccc-CCCCCc-----------cccccHHHHHHHHHh--cch
Confidence 1 11 1122222223222 22111111111000 000 122222 355665555544321 111
Q ss_pred CCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCC--chHH
Q 002696 625 EKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT--DSEV 702 (891)
Q Consensus 625 ~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~--d~~V 702 (891)
+..+|.. ++...++--|.+.+..+++.|.-+ .+-.|.-+++.+|.+ ..+.+|-.|.+-..|. ...|
T Consensus 169 ---~l~~Ry~----amF~LRn~g~EeaI~al~~~l~~~-SalfrhEvAfVfGQl----~s~~ai~~L~k~L~d~~E~pMV 236 (289)
T KOG0567|consen 169 ---PLFERYR----AMFYLRNIGTEEAINALIDGLADD-SALFRHEVAFVFGQL----QSPAAIPSLIKVLLDETEHPMV 236 (289)
T ss_pred ---hHHHHHh----hhhHhhccCcHHHHHHHHHhcccc-hHHHHHHHHHHHhhc----cchhhhHHHHHHHHhhhcchHH
Confidence 1455552 233333332337777777777544 789999999999999 6777888888777775 5789
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHHHHHHHHhhhh
Q 002696 703 AMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVH 751 (891)
Q Consensus 703 r~~AiiALGlV~aGtnn~rv~~~Lr~l~~~~~~d~~~~f~~~iAqGll~ 751 (891)
|.-|..|||.|+ +......|+++.. -.++..+-.+.+|+-+..
T Consensus 237 RhEaAeALGaIa----~e~~~~vL~e~~~--D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 237 RHEAAEALGAIA----DEDCVEVLKEYLG--DEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHhhc----CHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHH
Confidence 999999999983 4566677777433 133456777777766543
No 35
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.58 E-value=0.033 Score=51.65 Aligned_cols=79 Identities=24% Similarity=0.241 Sum_probs=54.1
Q ss_pred chhHHHHHhHHhhhcchhh-HHHHHHHHH---HHhhcCChhHHhHHHHHhhhhccCCC------cHHHHHHHHHhhcCCc
Q 002696 630 YQGPAVLGIAMVAMAEELG-LEMAIRSLE---HLLQYGEQNIRRAVPLALGLLCISNP------KVNVMDTLSRLSHDTD 699 (891)
Q Consensus 630 vrr~avlglglI~~~~~~g-~e~~~~~l~---~L~~~~np~VR~ga~lALGL~~aGt~------~~~aid~L~~l~~D~d 699 (891)
.|+++++|++-++.+-+.. .+....++. ....+.|+.|||.+|-||.-+.-..+ -.++++.|.+++.|+|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4778888888776654311 122222222 33478899999999999987653222 2467888999999999
Q ss_pred hHHHHHHHH
Q 002696 700 SEVAMAAVI 708 (891)
Q Consensus 700 ~~Vr~~Aii 708 (891)
..||.+|-+
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 999987743
No 36
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=1.8 Score=54.88 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=62.7
Q ss_pred cchhHHHHHhHHhhhcchhhHHHHHHHHH---HHhhcCChhHHhHHHHHhhhhccCCCc------HHHHHHHHHhhcCCc
Q 002696 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLE---HLLQYGEQNIRRAVPLALGLLCISNPK------VNVMDTLSRLSHDTD 699 (891)
Q Consensus 629 ~vrr~avlglglI~~~~~~g~e~~~~~l~---~L~~~~np~VR~ga~lALGL~~aGt~~------~~aid~L~~l~~D~d 699 (891)
+..+.|.-+|-.++++=+ |+..++-++. .++++.++.-|.++-+|++.+.=|.++ +++++...++.+||.
T Consensus 324 ~~~~~A~~~lDrlA~~L~-g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph 402 (1075)
T KOG2171|consen 324 TPYRAAEQALDRLALHLG-GKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH 402 (1075)
T ss_pred CcHHHHHHHHHHHHhcCC-hhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Confidence 356788888888877644 3455565554 556888999999999999977555443 233444456679999
Q ss_pred hHHHHHHHHHHHHHc
Q 002696 700 SEVAMAAVISLGLIG 714 (891)
Q Consensus 700 ~~Vr~~AiiALGlV~ 714 (891)
+.||++|+.|+|-+.
T Consensus 403 prVr~AA~naigQ~s 417 (1075)
T KOG2171|consen 403 PRVRYAALNAIGQMS 417 (1075)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999874
No 37
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.48 E-value=0.03 Score=45.77 Aligned_cols=48 Identities=35% Similarity=0.464 Sum_probs=36.8
Q ss_pred hhHHhHHHHHhhhhccCCCc------HHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 002696 665 QNIRRAVPLALGLLCISNPK------VNVMDTLSRLSHDTDSEVAMAAVISLGL 712 (891)
Q Consensus 665 p~VR~ga~lALGL~~aGt~~------~~aid~L~~l~~D~d~~Vr~~AiiALGl 712 (891)
|.||.+++.+||-+.-+.+. .+++..|.++..|+++.||.+|+.|||-
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 56888888888865433332 3567778888899999999999999984
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=95.30 E-value=12 Score=47.08 Aligned_cols=333 Identities=13% Similarity=0.077 Sum_probs=161.6
Q ss_pred hhhHHHHHHHhcccccccchh-hHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCCh--hhHHHHHHhhcCCCCHHHHHH
Q 002696 408 EHGKMSAAASLGMILLWDVDS-GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC--DPALALLSEYVGREDACIRIG 484 (891)
Q Consensus 408 ~~~k~sA~aslGlI~~~~~~~-~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~--d~~l~lL~~~L~~~~~~v~~g 484 (891)
...|..|.-++|.|...+.-+ ....+.+-+.+.++|+|-.|++|+.-++....+.. ......|.+.|.+++..+...
T Consensus 119 p~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~n 198 (746)
T PTZ00429 119 PVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASN 198 (746)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHH
Confidence 356777777777777654433 23445556667788888888888887765332111 113455556666666665555
Q ss_pred HHHHHHHHhcc---------------------------------------CCC---HHHHHHHHHHhcCCCCchHHHHHH
Q 002696 485 AIMGLGISYAG---------------------------------------TQN---DQIRHKLSTILNDAKSPLDVIAFS 522 (891)
Q Consensus 485 A~lGLGlay~G---------------------------------------s~~---~~v~e~L~~~L~d~~~~~e~~~~A 522 (891)
|+..|--+.-- ..+ .++++.+.|.|...+..+- .+
T Consensus 199 Al~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVV---l~ 275 (746)
T PTZ00429 199 AAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVV---MG 275 (746)
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHH---HH
Confidence 55444332110 001 1344444454443221111 12
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHH----HhhcCccccCchhHHHHHH-HHHhhhcCChhhHHHHHHHH-hhchhhh-hhhh
Q 002696 523 AISLGLIYVGSCNEEVAQAIIFA----LMDRSESELGEPLTRLIPL-GLGLLYLGKQESVEATAEVS-KTFNEKI-RKYC 595 (891)
Q Consensus 523 aLaLGLi~lGs~n~~~~e~ll~~----L~~~~~t~l~e~~~r~~~l-glgLl~lG~~e~~~~li~~L-~~~~~~i-~r~~ 595 (891)
|.-+=+-+.-..+.+..+.+... |+.-.. .++-++++++ -+-++....++....-++.+ ...+||. .|.-
T Consensus 276 Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s---s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~ 352 (746)
T PTZ00429 276 AIKVVANLASRCSQELIERCTVRVNTALLTLSR---RDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLE 352 (746)
T ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC---CCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHH
Confidence 22211111111233333332211 110000 2234555554 23333334444333333332 2223332 2221
Q ss_pred hHHHHHHHHhcCCC-HHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhh-------------
Q 002696 596 DMTLLSCAYAGTGN-VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ------------- 661 (891)
Q Consensus 596 ~~~~~glAyaGTGn-~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~------------- 661 (891)
-+-+-+..+...| ...+++|.+|+.+ .+. +++|.++-+||-++..-|-..+.|.+.+-.|+.
T Consensus 353 -KLeIL~~Lane~Nv~~IL~EL~eYa~d-~D~--ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vi 428 (746)
T PTZ00429 353 -KLRLLLKLVTPSVAPEILKELAEYASG-VDM--VFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAA 428 (746)
T ss_pred -HHHHHHHHcCcccHHHHHHHHHHHhhc-CCH--HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 2222223334444 3577788888864 333 688888888888887644222223222211111
Q ss_pred ------------------------cCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhc---CCchHHHHHHHHHHHHHc
Q 002696 662 ------------------------YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH---DTDSEVAMAAVISLGLIG 714 (891)
Q Consensus 662 ------------------------~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~---D~d~~Vr~~AiiALGlV~ 714 (891)
-.+|..|.+..+.+|-.|- --.++-+.|+++.+ +-+..||...+.+..=+.
T Consensus 429 k~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~--~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlf 506 (746)
T PTZ00429 429 KDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD--FIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMF 506 (746)
T ss_pred HHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHh--hHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHH
Confidence 1234567777788887542 12235567777763 445679888887777555
Q ss_pred CCCCc---hHHHHHHHHhhhhhccChhhHHHHHHHHhhhhcC
Q 002696 715 SGTNN---ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMG 753 (891)
Q Consensus 715 aGtnn---~rv~~~Lr~l~~~~~~d~~~~f~~~iAqGll~~G 753 (891)
...+. ..+..+|+.+.++ ..||..|=-+++-.-|+..+
T Consensus 507 l~~p~~~~~~l~~vL~~~t~~-~~d~DVRDRA~~Y~rLLs~~ 547 (746)
T PTZ00429 507 LRDPQGMEPQLNRVLETVTTH-SDDPDVRDRAFAYWRLLSKG 547 (746)
T ss_pred hcCcHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcCC
Confidence 55442 3355555554443 46777665555555555443
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.44 E-value=18 Score=45.58 Aligned_cols=178 Identities=12% Similarity=0.030 Sum_probs=100.6
Q ss_pred hhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCc--cchhHHHHHhHHhhhcc
Q 002696 568 LLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE--AYQGPAVLGIAMVAMAE 645 (891)
Q Consensus 568 Ll~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~--~vrr~avlglglI~~~~ 645 (891)
|+..|+-+++...++.+....++...+...+ ++.+|..+|+.......+.-+........ .....+-++.++.-.++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~-la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRW-VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHH-HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 3445666777777777776554344443332 48899999997766665554332211100 12234445555666666
Q ss_pred hhhHHHHHHHHHHHhhcCC------------h---hHHhHHHHHhhhhccCCCcHHHHHHHHHhh-cCCchHHHHHHHHH
Q 002696 646 ELGLEMAIRSLEHLLQYGE------------Q---NIRRAVPLALGLLCISNPKVNVMDTLSRLS-HDTDSEVAMAAVIS 709 (891)
Q Consensus 646 ~~g~e~~~~~l~~L~~~~n------------p---~VR~ga~lALGL~~aGt~~~~aid~L~~l~-~D~d~~Vr~~AiiA 709 (891)
. +.+...+..+.+... | ....-.-+|..+...| -..++++.|.+.. .+|+.. .+.+.
T Consensus 326 ~---~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g-~~~eA~~~l~~al~~~P~n~---~l~~~ 398 (765)
T PRK10049 326 Y---PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN-DLPQAEMRARELAYNAPGNQ---GLRID 398 (765)
T ss_pred H---HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH---HHHHH
Confidence 5 778888887765421 1 1111122233333332 2356777887764 466662 46788
Q ss_pred HHHHcCCCCch-HHHHHHHHhhhhhccChhhHHHHHHHHhhhhcCCCce
Q 002696 710 LGLIGSGTNNA-RIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLL 757 (891)
Q Consensus 710 LGlV~aGtnn~-rv~~~Lr~l~~~~~~d~~~~f~~~iAqGll~~G~G~~ 757 (891)
+|.+....+++ +..+.+++... .+|.. ..+.+++|+..++.|..
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~---l~Pd~-~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEV---LEPRN-INLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh---hCCCC-hHHHHHHHHHHHHhCCH
Confidence 88888777754 44555555444 34542 23677777788877764
No 40
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.08 E-value=1.4 Score=54.70 Aligned_cols=263 Identities=21% Similarity=0.255 Sum_probs=145.0
Q ss_pred HHHHhhcCC-CCHHHHHHHHHHHHHHhccC---CCHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 002696 468 ALLSEYVGR-EDACIRIGAIMGLGISYAGT---QNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAII 543 (891)
Q Consensus 468 ~lL~~~L~~-~~~~v~~gA~lGLGlay~Gs---~~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll 543 (891)
.++.+..+. .+..+++-|.+.||-+.-+- ...++...+...+..+ +-++-++|++|||.+.+|+-+.-+ -.++
T Consensus 821 kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp--~edvksAAs~ALGsl~vgnl~~yL-pfil 897 (1233)
T KOG1824|consen 821 KLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSP--SEDVKSAASYALGSLAVGNLPKYL-PFIL 897 (1233)
T ss_pred HHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCC--hHHHHHHHHHHhhhhhcCchHhHH-HHHH
Confidence 334444332 34577888888888764432 2345566666666543 446777888888888877765322 2333
Q ss_pred HHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhcc
Q 002696 544 FALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQH 623 (891)
Q Consensus 544 ~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~ 623 (891)
+.+ ++| +...++-+ .+ +.+.+........++ .-+++...|+..|...
T Consensus 898 ~qi----~sq---pk~QyLLL-hS------------lkevi~~~svd~~~~-------------~v~~IW~lL~k~cE~~ 944 (1233)
T KOG1824|consen 898 EQI----ESQ---PKRQYLLL-HS------------LKEVIVSASVDGLKP-------------YVEKIWALLFKHCECA 944 (1233)
T ss_pred HHH----hcc---hHhHHHHH-HH------------HHHHHHHhccchhhh-------------hHHHHHHHHHHhcccc
Confidence 321 122 22222211 00 111111100000011 0122333455666432
Q ss_pred CCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHH--------Hhh
Q 002696 624 HEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLS--------RLS 695 (891)
Q Consensus 624 ~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~--------~l~ 695 (891)
+| -.|....-.+|.+..-+| +....-+..++.+..|+.|..+--|.- |.=+-++.-+|.+. ++.
T Consensus 945 -ee--gtR~vvAECLGkL~l~ep---esLlpkL~~~~~S~a~~~rs~vvsavK--fsisd~p~~id~~lk~~ig~fl~~~ 1016 (1233)
T KOG1824|consen 945 -EE--GTRNVVAECLGKLVLIEP---ESLLPKLKLLLRSEASNTRSSVVSAVK--FSISDQPQPIDPLLKQQIGDFLKLL 1016 (1233)
T ss_pred -hh--hhHHHHHHHhhhHHhCCh---HHHHHHHHHHhcCCCcchhhhhhheee--eeecCCCCccCHHHHHHHHHHHHHH
Confidence 22 578888889999999999 777777788889999999988776655 44556666676543 346
Q ss_pred cCCchHHHHHHHHHHHHHcCCCCch-HHHHHHHHhhhhhccChhh-HHHHHHHHhhhhcCCCceeecccCC--CCC-CCC
Q 002696 696 HDTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRNLSSYYYKDANL-LFCVRIAQGLVHMGKGLLTLNPYHS--DRF-LLS 770 (891)
Q Consensus 696 ~D~d~~Vr~~AiiALGlV~aGtnn~-rv~~~Lr~l~~~~~~d~~~-~f~~~iAqGll~~G~G~~tlsp~~s--d~~-~~~ 770 (891)
.|||..|||.|+.++--+- .|-| -|..+|-.|---.+.+... +=-+ +.+-+.||.. |.| -++
T Consensus 1017 ~dpDl~VrrvaLvv~nSaa--hNKpslIrDllpeLLp~Ly~eTkvrkelI-----------reVeMGPFKH~VDdgLd~R 1083 (1233)
T KOG1824|consen 1017 RDPDLEVRRVALVVLNSAA--HNKPSLIRDLLPELLPLLYSETKVRKELI-----------REVEMGPFKHTVDDGLDLR 1083 (1233)
T ss_pred hCCchhHHHHHHHHHHHHH--ccCHhHHHHHHHHHHHHHHHhhhhhHhhh-----------hhhcccCccccccchHHHH
Confidence 8999999999988776543 3332 2444444433221111111 0011 2233445421 223 377
Q ss_pred hHHHHHHHHHHHhhccc
Q 002696 771 PTALAGIVTTLFACLDM 787 (891)
Q Consensus 771 ~~a~agLl~~l~~~~~~ 787 (891)
+.|.=+|.+.+=+++|-
T Consensus 1084 KaaFEcmytLLdscld~ 1100 (1233)
T KOG1824|consen 1084 KAAFECMYTLLDSCLDR 1100 (1233)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 88888888888777664
No 41
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.92 E-value=14 Score=41.74 Aligned_cols=262 Identities=14% Similarity=0.115 Sum_probs=142.5
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHhh
Q 002696 449 LLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-QIRHKLSTILNDAKSPLDVIAFSAISLG 527 (891)
Q Consensus 449 llaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~-~v~e~L~~~L~d~~~~~e~~~~AaLaLG 527 (891)
..|+.....|.. +.++..+...+...... ..+...+|.++...++- +..+.+...+..+.........+...||
T Consensus 40 ~~g~~~~~~~~~---~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 40 FKGLNFLLNEQP---DKAIDLFIEMLKVDPET--VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHHHHHhcCCh---HHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 344444455543 34888888877643222 23456677777666653 4555555555433222222234667888
Q ss_pred hhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHHHhhch-hhhh--hhhhHHHHHHHH
Q 002696 528 LIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN-EKIR--KYCDMTLLSCAY 604 (891)
Q Consensus 528 Li~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~L~~~~-~~i~--r~~~~~~~glAy 604 (891)
.++...++.+.+...+..+.+..+ ....-...++..+...|+-+++...++.+.... .+.. .......+|..|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGD----FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 888888887777666665543211 112222334555566677777777777665432 1111 111234577788
Q ss_pred hcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCC-
Q 002696 605 AGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP- 683 (891)
Q Consensus 605 aGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~- 683 (891)
...|+.....+.+.-+.+...+ ..+....+|..+...|+. +.+.+.+...... +|.....+-..++.++...+
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 191 LARGDLDAARALLKKALAADPQ--CVRASILLGDLALAQGDY---AAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCcC--CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCC
Confidence 8999976555554444332222 455556677777777777 8888888887754 34332233334444444444
Q ss_pred cHHHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHHh
Q 002696 684 KVNVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRNL 729 (891)
Q Consensus 684 ~~~aid~L~~l~-~D~d~~Vr~~AiiALGlV~aGtnn-~rv~~~Lr~l 729 (891)
..+++..+.++. .+|+..+. ..+|.+....++ .+...++++.
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~----~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLL----LALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHH----HHHHHHHHHhCCHHHHHHHHHHH
Confidence 345666777654 35554332 344444444443 2344445443
No 42
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.67 E-value=5 Score=48.59 Aligned_cols=204 Identities=11% Similarity=0.053 Sum_probs=124.7
Q ss_pred cCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCH
Q 002696 531 VGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV 610 (891)
Q Consensus 531 lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~ 610 (891)
+.+.+.+.++.+.+.+.. .. ....+. +-=+|.+.|+++.+..+.+.+...+-+-......+...++++-+-+.
T Consensus 320 lR~~~~e~l~~l~~~~~~-~~----~~~r~~--~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~ 392 (574)
T smart00638 320 LRTLSEEQLEQLWRQLYE-KK----KKARRI--FLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTE 392 (574)
T ss_pred HHhCCHHHHHHHHHHHHh-CC----HHHHHH--HHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCH
Confidence 345566666666665432 10 111111 12357778999998888888876543333344555556666678899
Q ss_pred HHHHHHHhhhhccCCC-CccchhHHHHHhHHhhhcc---h------hhHHHHHHHHHHHh---hcCChhHHhHHHHHhhh
Q 002696 611 LKVQNLLGHCAQHHEK-GEAYQGPAVLGIAMVAMAE---E------LGLEMAIRSLEHLL---QYGEQNIRRAVPLALGL 677 (891)
Q Consensus 611 ~~iq~LL~~~~~~~~d-~~~vrr~avlglglI~~~~---~------~g~e~~~~~l~~L~---~~~np~VR~ga~lALGL 677 (891)
..++.|+.+|.+.... ...++..|+++.|-+..+- . +-.+-++.+...|. ...+...+....-|||=
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 9999999888764322 1256778888888655321 1 00122333333332 24566677788888885
Q ss_pred hccCCCcHHHHHHHHHhhc---CCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHHHHHHH
Q 002696 678 LCISNPKVNVMDTLSRLSH---DTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIA 746 (891)
Q Consensus 678 ~~aGt~~~~aid~L~~l~~---D~d~~Vr~~AiiALGlV~aGtnn~rv~~~Lr~l~~~~~~d~~~~f~~~iA 746 (891)
+ |.+.++..|.++.. +...++|..|+.||..+.. ....++...|-.+.....+++..|.++-++
T Consensus 473 ~----g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~-~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~ 539 (574)
T smart00638 473 A----GHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAK-RDPRKVQEVLLPIYLNRAEPPEVRMAAVLV 539 (574)
T ss_pred c----CChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 5 66788888888865 3457899999999996533 233456666666555445666777766654
No 43
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=93.48 E-value=3.5 Score=46.22 Aligned_cols=243 Identities=18% Similarity=0.182 Sum_probs=152.5
Q ss_pred Hhhc-CCCCHHHHHHHHHHHHHHhccCCCH-------HHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCC--H----
Q 002696 471 SEYV-GREDACIRIGAIMGLGISYAGTQND-------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN--E---- 536 (891)
Q Consensus 471 ~~~L-~~~~~~v~~gA~lGLGlay~Gs~~~-------~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n--~---- 536 (891)
.+++ +..+...+..|+-+|-=+..||.+. ..+-.+.+.|++++ .++.-.|..|||-|. |-.. .
T Consensus 120 vefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~--~~V~eQavWALGNiA-GDS~~~RD~vL 196 (526)
T COG5064 120 VEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTE--DDVREQAVWALGNIA-GDSEGCRDYVL 196 (526)
T ss_pred HHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCch--HHHHHHHHHHhcccc-CCchhHHHHHH
Confidence 3444 3455678888888888888887643 45667777777653 344456888888875 3211 0
Q ss_pred --HHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChh--------hHHHHHHHHhhchhhhhhhhhHHHHHHHHhc
Q 002696 537 --EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE--------SVEATAEVSKTFNEKIRKYCDMTLLSCAYAG 606 (891)
Q Consensus 537 --~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e--------~~~~li~~L~~~~~~i~r~~~~~~~glAyaG 606 (891)
-+.+.++..|.+ +..|-++.|-+.--++=++-|+.- ++-.++..|.-..||-.-.-+++ ++.|.-
T Consensus 197 ~~galeplL~ll~s---s~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~W--AiSYls 271 (526)
T COG5064 197 QCGALEPLLGLLLS---SAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACW--AISYLS 271 (526)
T ss_pred hcCchHHHHHHHHh---ccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHH--HHHHhc
Confidence 134556655532 222456777777777777777652 23334444443444443333444 478999
Q ss_pred CCCHHHHHHHHhhhh--------ccCCCCccchhHHHHHhHHhhhcchhhHH-----HHHHHHHHHhhcCChhHHhHHHH
Q 002696 607 TGNVLKVQNLLGHCA--------QHHEKGEAYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPL 673 (891)
Q Consensus 607 TGn~~~iq~LL~~~~--------~~~~d~~~vrr~avlglglI~~~~~~g~e-----~~~~~l~~L~~~~np~VR~ga~l 673 (891)
-|.+++|+..|.... ++.+ ..++.-|.-++|-|..|++...+ -+...|..|+.+.-..||.-+|.
T Consensus 272 Dg~~E~i~avld~g~~~RLvElLs~~s--a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW 349 (526)
T COG5064 272 DGPNEKIQAVLDVGIPGRLVELLSHES--AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW 349 (526)
T ss_pred cCcHHHHHHHHhcCCcHHHHHHhcCcc--ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence 999999997654321 2222 26777888888888888763222 13345555565555689999999
Q ss_pred HhhhhccCCCcH--HH-----HHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc-hHHH
Q 002696 674 ALGLLCISNPKV--NV-----MDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN-ARIA 723 (891)
Q Consensus 674 ALGL~~aGt~~~--~a-----id~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn-~rv~ 723 (891)
.+.=+-|||-.. .+ +-.|-++.+-.+-..+--|+-|..-.+.|.++ |.+.
T Consensus 350 TiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~i 407 (526)
T COG5064 350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDII 407 (526)
T ss_pred eecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHH
Confidence 999998987532 22 33455556666777888888888888888775 5443
No 44
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.12 E-value=5.2 Score=49.15 Aligned_cols=273 Identities=13% Similarity=0.096 Sum_probs=139.6
Q ss_pred HHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHH-HH-HHHHH
Q 002696 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQ-IR-HKLST 507 (891)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~~-v~-e~L~~ 507 (891)
+..|+.+|.+..+.+--=|..++--..+-..++--|+...|+.++.++....|.+|..-|--+.+-+.+.- .. -.|-+
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~ 326 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES 326 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence 44455556555555444444444333333334445788899999999999999999998887766543210 00 12445
Q ss_pred HhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhc-CccccCchhH-HHHHHHHHhhhcCChhhHHHHHHHHh
Q 002696 508 ILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR-SESELGEPLT-RLIPLGLGLLYLGKQESVEATAEVSK 585 (891)
Q Consensus 508 ~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~-~~t~l~e~~~-r~~~lglgLl~lG~~e~~~~li~~L~ 585 (891)
.+.|++-+ .|.+|+-.+ +-||+++-++.|++..-.. ++....-+++ -=+..++.+.|--+....-..+..+.
T Consensus 327 lItd~Nrs-----Iat~AITtL-LKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 327 LITDSNRS-----IATLAITTL-LKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred hhcccccc-----hhHHHHHHH-HHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 55665322 366777665 4788887777777654321 2211011111 11112223333222222111111111
Q ss_pred hchhhhhhhhhHHHHHHHHhcC-CCHHHHHHHHhhhhccCCCCccchhHHHHHhHHh-----hhcchhhHHHHHHHHHHH
Q 002696 586 TFNEKIRKYCDMTLLSCAYAGT-GNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMV-----AMAEELGLEMAIRSLEHL 659 (891)
Q Consensus 586 ~~~~~i~r~~~~~~~glAyaGT-Gn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI-----~~~~~~g~e~~~~~l~~L 659 (891)
..+ --..|-..++.++.=+-. ....+-..|.|.|. -.+| ...+..++-=+.++ -..+| +.-.|.+-..
T Consensus 401 r~e-Gg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCe-fIED-ce~~~i~~rILhlLG~EgP~a~~P---skyir~iyNR 474 (865)
T KOG1078|consen 401 REE-GGFEFKRAIVDAIIDIIEENPDSKERGLEHLCE-FIED-CEFTQIAVRILHLLGKEGPKAPNP---SKYIRFIYNR 474 (865)
T ss_pred Hhc-cCchHHHHHHHHHHHHHHhCcchhhHHHHHHHH-HHHh-ccchHHHHHHHHHHhccCCCCCCc---chhhHHHhhh
Confidence 110 000111111111110000 11111222333332 1111 12222222222222 22233 3334444444
Q ss_pred hhcCChhHHhHHHHHhhhhccCC--CcHHHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 002696 660 LQYGEQNIRRAVPLALGLLCISN--PKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (891)
Q Consensus 660 ~~~~np~VR~ga~lALGL~~aGt--~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~ 714 (891)
.+-.|++||.++--||+-..++. ..+.+.-+|.+...|+|+.||-.|.+++-..-
T Consensus 475 viLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 475 VILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 56778999999999999888665 45678889999999999999999999998876
No 45
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=5.5 Score=48.17 Aligned_cols=315 Identities=17% Similarity=0.159 Sum_probs=162.9
Q ss_pred hhh-HHHHHHHhcccccccchhh----HHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhh----HHHHHHhhcCCCC
Q 002696 408 EHG-KMSAAASLGMILLWDVDSG----LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDP----ALALLSEYVGRED 478 (891)
Q Consensus 408 ~~~-k~sA~aslGlI~~~~~~~~----l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~----~l~lL~~~L~~~~ 478 (891)
+|. |-..+|++++.-.--.++- +.+|++.|.++.=.+|-.+++|+|.|.-|-.+-.-| .+.+|.+.|.++.
T Consensus 368 dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKk 447 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKK 447 (885)
T ss_pred cccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCc
Confidence 353 4555677777554333333 344444455555557788888999888887654332 4455666677888
Q ss_pred HHHHHHHHHHHHHH----hccCCCHHHHHHHHH---HhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCc
Q 002696 479 ACIRIGAIMGLGIS----YAGTQNDQIRHKLST---ILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSE 551 (891)
Q Consensus 479 ~~v~~gA~lGLGla----y~Gs~~~~v~e~L~~---~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~ 551 (891)
+.+|.-.|--|+=- ..-+.++-....|.+ .+.|+ +-.|+-+||.|..-+ .+++.++++.+|-
T Consensus 448 plVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~--NK~VQEAAcsAfAtl-----eE~A~~eLVp~l~---- 516 (885)
T KOG2023|consen 448 PLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDS--NKKVQEAACSAFATL-----EEEAGEELVPYLE---- 516 (885)
T ss_pred cceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcc--cHHHHHHHHHHHHHH-----HHhccchhHHHHH----
Confidence 88888777777631 111211222222222 22353 778888888887654 3455555555431
Q ss_pred cccCchhHHHHHHHHHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhcc-----CCC
Q 002696 552 SELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQH-----HEK 626 (891)
Q Consensus 552 t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~-----~~d 626 (891)
.+-.- +..++-+|.+.+. --+.++..+ +|..++-+ -....=||.|+.-..+. .+|
T Consensus 517 -----~IL~~--l~~af~kYQ~KNL-lILYDAIgt-----------lAdsvg~~-Ln~~~YiqiLmPPLi~KW~~lsd~D 576 (885)
T KOG2023|consen 517 -----YILDQ--LVFAFGKYQKKNL-LILYDAIGT-----------LADSVGHA-LNKPAYIQILMPPLIEKWELLSDSD 576 (885)
T ss_pred -----HHHHH--HHHHHHHHhhcce-ehHHHHHHH-----------HHHHHHHh-cCcHHHHHHhccHHHHHHHhcCccc
Confidence 11111 2233444543321 111222111 11111100 01111245443322211 111
Q ss_pred Cccc--------hhHHHHHhHHhhhcchhhHHHHHHHHHH----HhhcCC-h--------------hHHhHHHHHhhhhc
Q 002696 627 GEAY--------QGPAVLGIAMVAMAEELGLEMAIRSLEH----LLQYGE-Q--------------NIRRAVPLALGLLC 679 (891)
Q Consensus 627 ~~~v--------rr~avlglglI~~~~~~g~e~~~~~l~~----L~~~~n-p--------------~VR~ga~lALGL~~ 679 (891)
+ ++ --+..++-||.-|..|+ .+.+.+++.+ ++...+ | ..-.|.+=+|| +
T Consensus 577 K-dLfPLLEClSsia~AL~~gF~P~~~~V-y~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg--~ 652 (885)
T KOG2023|consen 577 K-DLFPLLECLSSIASALGVGFLPYAQPV-YQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLG--S 652 (885)
T ss_pred c-hHHHHHHHHHHHHHHHhccccccCHHH-HHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhh--h
Confidence 1 11 13466788899888885 5778888762 222222 1 12333333333 1
Q ss_pred cC---CCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC---chHHHHHHHHhhhhh-ccChhhHHHHHHHHhhhhc
Q 002696 680 IS---NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN---NARIAGMLRNLSSYY-YKDANLLFCVRIAQGLVHM 752 (891)
Q Consensus 680 aG---t~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtn---n~rv~~~Lr~l~~~~-~~d~~~~f~~~iAqGll~~ 752 (891)
-. -.+.++.++|...+.|+.++|||.|..=||=+-.-.. -|.++.|+..+.... ..+..+-.-+.-|.|-+.+
T Consensus 653 ~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~ 732 (885)
T KOG2023|consen 653 HIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIAL 732 (885)
T ss_pred chHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHH
Confidence 00 0233478889999999999999988766665433222 245566666655221 1223455667888898887
Q ss_pred CCCce
Q 002696 753 GKGLL 757 (891)
Q Consensus 753 G~G~~ 757 (891)
-.|.-
T Consensus 733 k~g~~ 737 (885)
T KOG2023|consen 733 KMGLK 737 (885)
T ss_pred Hhchh
Confidence 65543
No 46
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.87 E-value=1 Score=41.45 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=51.0
Q ss_pred cchhHHHHHhHHhhhcchhhHH-----HHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcH-------HHHHHHHHhhc
Q 002696 629 AYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSH 696 (891)
Q Consensus 629 ~vrr~avlglglI~~~~~~g~e-----~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~-------~aid~L~~l~~ 696 (891)
.+|..++.+++-+..+.|.... .+.+.+-.++.+.|+.+|..++.+|+-++.+.+.. .++..|.++.+
T Consensus 22 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~ 101 (120)
T cd00020 22 NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD 101 (120)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHh
Confidence 5677777777777665331111 11223333445667888888888888777665321 13455666667
Q ss_pred CCchHHHHHHHHHHHHH
Q 002696 697 DTDSEVAMAAVISLGLI 713 (891)
Q Consensus 697 D~d~~Vr~~AiiALGlV 713 (891)
+.+..++..|+.+++-+
T Consensus 102 ~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 102 SSNEDIQKNATGALSNL 118 (120)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777776666543
No 47
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.66 E-value=5.6 Score=48.18 Aligned_cols=197 Identities=16% Similarity=0.145 Sum_probs=108.7
Q ss_pred ChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHH
Q 002696 573 KQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMA 652 (891)
Q Consensus 573 ~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~ 652 (891)
+.+....+.+.+.. .. ...-.++..+++.+||+. +++-|.+...+..-. ...++.++...+-...+| .+..
T Consensus 324 ~~e~l~~l~~~~~~-~~--~~~r~~~~Dal~~~GT~~--a~~~i~~~i~~~~~~--~~ea~~~~~~~~~~~~~P--t~~~ 394 (574)
T smart00638 324 SEEQLEQLWRQLYE-KK--KKARRIFLDAVAQAGTPP--ALKFIKQWIKNKKIT--PLEAAQLLAVLPHTARYP--TEEI 394 (574)
T ss_pred CHHHHHHHHHHHHh-CC--HHHHHHHHHHHHhcCCHH--HHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhhcC--CHHH
Confidence 34445555554433 11 233457788899999986 555666666554321 334444454444444565 3556
Q ss_pred HHHHHHHhhc----CChhHHhHHHHHhhhh----ccCCCc------HHHHHHHHH----hhcCCchHHHHHHHHHHHHHc
Q 002696 653 IRSLEHLLQY----GEQNIRRAVPLALGLL----CISNPK------VNVMDTLSR----LSHDTDSEVAMAAVISLGLIG 714 (891)
Q Consensus 653 ~~~l~~L~~~----~np~VR~ga~lALGL~----~aGt~~------~~aid~L~~----l~~D~d~~Vr~~AiiALGlV~ 714 (891)
.+.+..|+.+ .++.+|..+.+++|-+ |..++. .+.++.|.. ...+.+...++.++-|||-+|
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 6666666654 3578999999999943 333332 233333332 233456666778888998664
Q ss_pred CCCCchHHHHHHHHhhhhhccChhhHHHHHHHHhhh---hcCCCceeecccCCCCCCCChHHHHHHHHHH
Q 002696 715 SGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLV---HMGKGLLTLNPYHSDRFLLSPTALAGIVTTL 781 (891)
Q Consensus 715 aGtnn~rv~~~Lr~l~~~~~~d~~~~f~~~iAqGll---~~G~G~~tlsp~~sd~~~~~~~a~agLl~~l 781 (891)
....-..+..++. .-....+..|..+..|+--+ +--+-.-.+-|.+.|+.--....+++.++++
T Consensus 475 ~~~~i~~l~~~l~---~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 475 HPSSIKVLEPYLE---GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred ChhHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 4333333333332 11123456788888888732 2222222345555666655666777666665
No 48
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.11 E-value=1.5 Score=51.84 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=106.3
Q ss_pred HHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHH---------HHHhhhhccCCCCccchhHHHHHhHHhhhcchh
Q 002696 577 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQ---------NLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL 647 (891)
Q Consensus 577 ~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq---------~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~ 647 (891)
++.+++.|...++|-.++-++++ +-++.+|+.+..+ .+.+... ..++ +|+.-|+.+||=|+-..|-
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWa--LTnIAsgtse~T~~vv~agavp~fi~Ll~-s~~~--~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWA--LTNIASGTSEQTKVVVDAGAVPIFIQLLS-SPSA--DVREQAVWALGNIAGDSPD 185 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHH--HHHHhcCchhhccccccCCchHHHHHHhc-CCcH--HHHHHHHHHHhccccCChH
Confidence 45666777766667777766655 4455555533222 2334333 3343 8999999999999865552
Q ss_pred hHHHHHH--HHHHH---hhcCCh-hHHhHHHHHhhhhccCC-CcHH------HHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 002696 648 GLEMAIR--SLEHL---LQYGEQ-NIRRAVPLALGLLCISN-PKVN------VMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (891)
Q Consensus 648 g~e~~~~--~l~~L---~~~~np-~VR~ga~lALGL~~aGt-~~~~------aid~L~~l~~D~d~~Vr~~AiiALGlV~ 714 (891)
-.+-+.+ .+..| +...++ ...+.+..+|--+|.|. |.+. ++..|.++.+..|..|...|.-|+.-+.
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 1222221 12222 233333 57888999999999987 5443 4567888899999999999999999999
Q ss_pred CCCCc-----------hHHHHHHHHhhhhhccChhhHHHHHHHHhhhhcCCCce
Q 002696 715 SGTNN-----------ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLL 757 (891)
Q Consensus 715 aGtnn-----------~rv~~~Lr~l~~~~~~d~~~~f~~~iAqGll~~G~G~~ 757 (891)
-|+|+ +|+..+|.. .++.+.--+-.|.|=+-.|....
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~------~~~~v~~PaLRaiGNIvtG~d~Q 313 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGH------SSPKVVTPALRAIGNIVTGSDEQ 313 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcC------CCcccccHHHhhccceeeccHHH
Confidence 99985 344444443 34444444555555544444333
No 49
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=89.96 E-value=59 Score=40.32 Aligned_cols=269 Identities=12% Similarity=-0.031 Sum_probs=139.4
Q ss_pred cchhhHHHHHHHhcccccccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHH
Q 002696 406 NKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGA 485 (891)
Q Consensus 406 ~~~~~k~sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA 485 (891)
..++.......+......|+.++|+..+++.+........ +...+|.++.... +.+.++..+...+.-..... .+
T Consensus 72 ~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~--a~~~la~~l~~~g-~~~~Ai~~l~~Al~l~P~~~--~a 146 (656)
T PRK15174 72 AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE--DVLLVASVLLKSK-QYATVADLAEQAWLAFSGNS--QI 146 (656)
T ss_pred CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcH--HH
Confidence 3334444444455556789999999999988764433333 4455555543332 23457777777765322111 23
Q ss_pred HHHHHHHhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHH
Q 002696 486 IMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIP 563 (891)
Q Consensus 486 ~lGLGlay~Gs~~-~~v~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~ 563 (891)
...+|-++...++ ++..+.+...+. ++. +.+.. ..++ .++..++.+.+...+..++...+.. .+.. ...
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~----~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~-~~~~--~~~ 217 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMI----ATCL-SFLNKSRLPEDHDLARALLPFFALE-RQES--AGL 217 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHH----HHHH-HHHHcCCHHHHHHHHHHHHhcCCCc-chhH--HHH
Confidence 3445555655555 345555555543 322 22221 1112 2344555444444455444332111 1111 122
Q ss_pred HHHHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHH-----HHHHHHhhhhccCCCCccchhHHHHHh
Q 002696 564 LGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL-----KVQNLLGHCAQHHEKGEAYQGPAVLGI 638 (891)
Q Consensus 564 lglgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~-----~iq~LL~~~~~~~~d~~~vrr~avlgl 638 (891)
++..+...|+.+++...++........ .......+|.+|...|+.. ++..+-....-+.+ +.+...-+|.
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~--~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~---~~~a~~~lg~ 292 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLD--GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD---NVRIVTLYAD 292 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Confidence 345666778888777777665543221 1234456788888889854 34333333322222 4455555566
Q ss_pred HHhhhcchhhHHHHHHHHHHHhhc--CChhHHhHHHHHhhhhccCCCc-HHHHHHHHHhh-cCCch
Q 002696 639 AMVAMAEELGLEMAIRSLEHLLQY--GEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDS 700 (891)
Q Consensus 639 glI~~~~~~g~e~~~~~l~~L~~~--~np~VR~ga~lALGL~~aGt~~-~~aid~L~~l~-~D~d~ 700 (891)
.+...|+. +.+...+....+. .++.++.. +|.++...++ .++++.+.+.. .+|+.
T Consensus 293 ~l~~~g~~---~eA~~~l~~al~l~P~~~~a~~~----La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 293 ALIRTGQN---EKAIPLLQQSLATHPDLPYVRAM----YARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHCCCH---HHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 66666665 7777777776643 23444433 3444433343 35667777665 45554
No 50
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=89.76 E-value=1.3 Score=54.79 Aligned_cols=87 Identities=25% Similarity=0.335 Sum_probs=70.0
Q ss_pred ccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcH----HHHHHHHHhhcCCchHHH
Q 002696 628 EAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV----NVMDTLSRLSHDTDSEVA 703 (891)
Q Consensus 628 ~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~----~aid~L~~l~~D~d~~Vr 703 (891)
+.+|..|.=.++.+-.++=+ +.+...+..+.++.+|.||+.|++|++=+|-=.++. -.++.|.-++.|+|+.|-
T Consensus 106 ~~iR~~AlR~ls~l~~~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi 183 (757)
T COG5096 106 EEIRGFALRTLSLLRVKELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVI 183 (757)
T ss_pred HHHHHHHHHHHHhcChHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHH
Confidence 47899998888988776654 556666777779999999999999999988322222 256778889999999999
Q ss_pred HHHHHHHHHHcCC
Q 002696 704 MAAVISLGLIGSG 716 (891)
Q Consensus 704 ~~AiiALGlV~aG 716 (891)
.+|++++.-+.-.
T Consensus 184 ~nAl~sl~~i~~e 196 (757)
T COG5096 184 ANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHhchh
Confidence 9999999998765
No 51
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=89.76 E-value=4.8 Score=45.15 Aligned_cols=51 Identities=27% Similarity=0.283 Sum_probs=35.5
Q ss_pred cchhHHHHHhHHhhhcchh---h--HHHHHHHHHHHhhcCChhHHhHHHHHhhhhc
Q 002696 629 AYQGPAVLGIAMVAMAEEL---G--LEMAIRSLEHLLQYGEQNIRRAVPLALGLLC 679 (891)
Q Consensus 629 ~vrr~avlglglI~~~~~~---g--~e~~~~~l~~L~~~~np~VR~ga~lALGL~~ 679 (891)
.+..+|+-+-||++.--|. . .+...+.|..|+++.|..||.++.-+||++|
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5777888888888755442 1 1223333455567889999999999999885
No 52
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.38 E-value=5 Score=48.94 Aligned_cols=210 Identities=17% Similarity=0.207 Sum_probs=120.3
Q ss_pred chhHHHHHHHhhccCCCChHHHHHhhhccCCCCcccchHHHHHhHHHHHHHHHHhcccC-CccccccCCCCCCCCCCCcc
Q 002696 324 SEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMTVPSDASSGGSSGNW 402 (891)
Q Consensus 324 ~~~~~~~~~~l~i~~~k~~e~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~-~D~~l~~~~~~~~~~~~~~w 402 (891)
...|..+.+.+..++-+....+|+...... .....-..|..++..+|+. +-.++.. |
T Consensus 346 ~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~----------~~~~~r~~~lDal~~aGT~~av~~i~~------------~ 403 (618)
T PF01347_consen 346 LSKFSRLVRLLRTLSYEDLEELYKQLKSKS----------KKEQARKIFLDALPQAGTNPAVKFIKD------------L 403 (618)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHTTS-------------HHHHHHHHHHHHHH-SHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----------cHHHHHHHHHHHHHHcCCHHHHHHHHH------------H
Confidence 345888888888888888888887653310 1122235788999999988 4555553 6
Q ss_pred ccccch--hhHHHHHHHhcccccccchhhHHhHhhhhc----CCCchhHHHHHHHHHHhhcCCCCC--------------
Q 002696 403 LFKNKE--HGKMSAAASLGMILLWDVDSGLAQIDKYFH----STDNHVIAGALLGVGIVNCGIRND-------------- 462 (891)
Q Consensus 403 l~k~~~--~~k~sA~aslGlI~~~~~~~~l~~l~~yL~----s~~~~~k~GAllaLGli~~G~~~e-------------- 462 (891)
|.+.+- ..-.....++...-.--..+-+..+.+.+. ..+.+.+..|++++|-+.......
T Consensus 404 I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~ 483 (618)
T PF01347_consen 404 IKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCI 483 (618)
T ss_dssp HHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS-
T ss_pred HHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhh
Confidence 666442 222222333333221112223333333332 356789999999999774321111
Q ss_pred hhhHHHHHHhhcC----CCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCC-CCchHHHHHHHHHhhhhhcCCCCHH
Q 002696 463 CDPALALLSEYVG----REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDA-KSPLDVIAFSAISLGLIYVGSCNEE 537 (891)
Q Consensus 463 ~d~~l~lL~~~L~----~~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~~L~d~-~~~~e~~~~AaLaLGLi~lGs~n~~ 537 (891)
.+.....|...+. ..+...+.-++-|||=+ | .+.++..|.|++.+. ..+..++.+|..||..+ .-.+...
T Consensus 484 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g--~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~-~~~~~~~ 558 (618)
T PF01347_consen 484 IEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--G--HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRL-AKHCPEK 558 (618)
T ss_dssp -GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTG-GGT-HHH
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--C--CchhhHHHHhHhhhccccchHHHHHHHHHHHHH-hhcCcHH
Confidence 0123333444443 34567788899999964 4 357899999999865 56777888999999966 4455667
Q ss_pred HHHHHHHHHhhcCccccCchhHHHHHH
Q 002696 538 VAQAIIFALMDRSESELGEPLTRLIPL 564 (891)
Q Consensus 538 ~~e~ll~~L~~~~~t~l~e~~~r~~~l 564 (891)
+.+.++..+.+..+ +.=+|.+|+
T Consensus 559 v~~~l~~I~~n~~e----~~EvRiaA~ 581 (618)
T PF01347_consen 559 VREILLPIFMNTTE----DPEVRIAAY 581 (618)
T ss_dssp HHHHHHHHHH-TTS-----HHHHHHHH
T ss_pred HHHHHHHHhcCCCC----ChhHHHHHH
Confidence 78888887765432 223677764
No 53
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=89.25 E-value=12 Score=47.13 Aligned_cols=244 Identities=14% Similarity=0.179 Sum_probs=120.8
Q ss_pred CCchhHHHHHHHHHHhhcCCCCCh-----hhHHHHHHhhcCCCCHHHHH---HHHHHHHHHhccCCCHHHHHHHH----H
Q 002696 440 TDNHVIAGALLGVGIVNCGIRNDC-----DPALALLSEYVGREDACIRI---GAIMGLGISYAGTQNDQIRHKLS----T 507 (891)
Q Consensus 440 ~~~~~k~GAllaLGli~~G~~~e~-----d~~l~lL~~~L~~~~~~v~~---gA~lGLGlay~Gs~~~~v~e~L~----~ 507 (891)
.++.+|-.|.=|+-.|......-. +.++..|..++.......|. .+..-|--.|.++...+.++.++ |
T Consensus 621 ~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~ 700 (1233)
T KOG1824|consen 621 GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPP 700 (1233)
T ss_pred hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhh
Confidence 567788888888888765432211 12444555555544444443 36666667787777666555544 4
Q ss_pred HhcCCCCchHHHHHHHHHhhhhhcCCC------CHHHHHHHHHHHhhcCccccCchhHHHHHHHH------HhhhcCChh
Q 002696 508 ILNDAKSPLDVIAFSAISLGLIYVGSC------NEEVAQAIIFALMDRSESELGEPLTRLIPLGL------GLLYLGKQE 575 (891)
Q Consensus 508 ~L~d~~~~~e~~~~AaLaLGLi~lGs~------n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lgl------gLl~lG~~e 575 (891)
.+.+++ +.+...|---|-.++.+.. ...+.+.++..+ +.+...+.++.- +++.-+..+
T Consensus 701 Lisesd--lhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll--------~Spllqg~al~~~l~~f~alV~t~~~~ 770 (1233)
T KOG1824|consen 701 LISESD--LHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLL--------RSPLLQGGALSALLLFFQALVITKEPD 770 (1233)
T ss_pred hhhHHH--HHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHh--------hCccccchHHHHHHHHHHHHHhcCCCC
Confidence 444432 2221111111111122211 112344444432 233344433332 333333333
Q ss_pred h-HHHHHHHHhh-chhh------------hhhhhhHHHHHHHHhcCCCHHHHHHHHhhhh-ccCCCCccchhHHHHHhHH
Q 002696 576 S-VEATAEVSKT-FNEK------------IRKYCDMTLLSCAYAGTGNVLKVQNLLGHCA-QHHEKGEAYQGPAVLGIAM 640 (891)
Q Consensus 576 ~-~~~li~~L~~-~~~~------------i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~-~~~~d~~~vrr~avlglgl 640 (891)
. ...++..+.. ..++ +.+.. .++.|++- --+...+.+|.+-.. +..++ .+|-+|.+.+|=
T Consensus 771 l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cv--A~Lt~~~~-~~s~s~a~kl~~~~~s~~s~~--~ikvfa~LslGE 845 (1233)
T KOG1824|consen 771 LDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCV--AALTCACP-QKSKSLATKLIQDLQSPKSSD--SIKVFALLSLGE 845 (1233)
T ss_pred ccHHHHHHHHcCCcccccccchhHHHHHHHHHHH--HHHHHhcc-ccchhHHHHHHHHHhCCCCch--hHHHHHHhhhhh
Confidence 2 2222222211 1111 22222 23334433 222223334443332 34444 788899999999
Q ss_pred hhhcchhhH-HHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCC
Q 002696 641 VAMAEELGL-EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT 698 (891)
Q Consensus 641 I~~~~~~g~-e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~ 698 (891)
+..+.+.+. ...+.++-.-..+.+..|+.+|+.|||-+.+|+-+.=.=-+|....++|
T Consensus 846 lgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqp 904 (1233)
T KOG1824|consen 846 LGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQP 904 (1233)
T ss_pred hccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcch
Confidence 988776442 3344444444466677899999999998888876655545566665554
No 54
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=89.22 E-value=29 Score=39.24 Aligned_cols=250 Identities=14% Similarity=0.131 Sum_probs=141.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCCChh-----hHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC--CHH-----HHHHHH
Q 002696 439 STDNHVIAGALLGVGIVNCGIRNDCD-----PALALLSEYVGREDACIRIGAIMGLGISYAGTQ--NDQ-----IRHKLS 506 (891)
Q Consensus 439 s~~~~~k~GAllaLGli~~G~~~e~d-----~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~--~~~-----v~e~L~ 506 (891)
...+.-++-|.-+|--|.+|+.+... -+..++...|.+++.-++--++-+||=+.-.|. +.. +.+.|+
T Consensus 126 ~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL 205 (526)
T COG5064 126 IQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLL 205 (526)
T ss_pred cchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHH
Confidence 34556677777778777777654310 255666777777777778788888887643332 222 234455
Q ss_pred HHhcCCCCchHHHHHHHHHhhhhhcCCCC---HH----HHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHH
Q 002696 507 TILNDAKSPLDVIAFSAISLGLIYVGSCN---EE----VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEA 579 (891)
Q Consensus 507 ~~L~d~~~~~e~~~~AaLaLGLi~lGs~n---~~----~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~ 579 (891)
.++..++...-...-+-..|.-+.-|... .. +...+...++.+ +..+.-=+.-+++-+-=|.+|.+++
T Consensus 206 ~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~-----D~evlvDA~WAiSYlsDg~~E~i~a 280 (526)
T COG5064 206 GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR-----DPEVLVDACWAISYLSDGPNEKIQA 280 (526)
T ss_pred HHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHhccCcHHHHHH
Confidence 55554444333344566666666556532 12 222222222211 1223334445666666678888777
Q ss_pred HHH---------HHhh----chhhhhhhhhHHHHHHHHhcCCCH------------HHHHHHHhhhhccCCCCccchhHH
Q 002696 580 TAE---------VSKT----FNEKIRKYCDMTLLSCAYAGTGNV------------LKVQNLLGHCAQHHEKGEAYQGPA 634 (891)
Q Consensus 580 li~---------~L~~----~~~~i~r~~~~~~~glAyaGTGn~------------~~iq~LL~~~~~~~~d~~~vrr~a 634 (891)
+++ .|.. +..|..|.- +-.=||+. .+.+.||. +..+ .+|.-|
T Consensus 281 vld~g~~~RLvElLs~~sa~iqtPalR~v-------GNIVTG~D~QTqviI~~G~L~a~~~lLs----~~ke--~irKEa 347 (526)
T COG5064 281 VLDVGIPGRLVELLSHESAKIQTPALRSV-------GNIVTGSDDQTQVIINCGALKAFRSLLS----SPKE--NIRKEA 347 (526)
T ss_pred HHhcCCcHHHHHHhcCccccccCHHHHhh-------cCeeecCccceehheecccHHHHHHHhc----Chhh--hhhhhh
Confidence 655 2222 122444432 22335553 33333332 2332 788888
Q ss_pred HHHhHHhhhcchhhHHHHHHHH--------HHHhhcCChhHHhHHHHHhhhhc-cCCCcHHHHHHHHHhhcCCchHHHHH
Q 002696 635 VLGIAMVAMAEELGLEMAIRSL--------EHLLQYGEQNIRRAVPLALGLLC-ISNPKVNVMDTLSRLSHDTDSEVAMA 705 (891)
Q Consensus 635 vlglglI~~~~~~g~e~~~~~l--------~~L~~~~np~VR~ga~lALGL~~-aGt~~~~aid~L~~l~~D~d~~Vr~~ 705 (891)
.--|.-|..|+. +++..++ -||+.+++-.+|.-+|.|+.=+. -|.+.++++..| |.|+
T Consensus 348 CWTiSNITAGnt---eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryL----------v~qG 414 (526)
T COG5064 348 CWTISNITAGNT---EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYL----------VSQG 414 (526)
T ss_pred heeecccccCCH---HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHH----------HHcc
Confidence 888888888876 6555544 37778889999999999987543 455666665543 4455
Q ss_pred HHHHHHHHcCCCCc
Q 002696 706 AVISLGLIGSGTNN 719 (891)
Q Consensus 706 AiiALGlV~aGtnn 719 (891)
+|=.|-=.+.+..|
T Consensus 415 ~IkpLc~~L~~~dN 428 (526)
T COG5064 415 FIKPLCDLLDVVDN 428 (526)
T ss_pred chhHHHHHHhccCc
Confidence 55555555555555
No 55
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.16 E-value=14 Score=45.20 Aligned_cols=203 Identities=13% Similarity=0.075 Sum_probs=107.9
Q ss_pred cCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhc-CCC
Q 002696 531 VGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAG-TGN 609 (891)
Q Consensus 531 lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaG-TGn 609 (891)
+...+.+-+..+.+.+.... +....|-. +-=+|...|+.+.+..+.+.+...+-+-... .-+..++++.- .-+
T Consensus 356 lr~l~~~~L~~l~~~~~~~~----~~~~~r~~-~lDal~~aGT~~av~~i~~~I~~~~~~~~ea-~~~l~~l~~~~~~Pt 429 (618)
T PF01347_consen 356 LRTLSYEDLEELYKQLKSKS----KKEQARKI-FLDALPQAGTNPAVKFIKDLIKSKKLTDDEA-AQLLASLPFHVRRPT 429 (618)
T ss_dssp HTTS-HHHHHHHHHHHTTS-------HHHHHH-HHHHHHHH-SHHHHHHHHHHHHTT-S-HHHH-HHHHHHHHHT-----
T ss_pred HhcCCHHHHHHHHHHHHhhc----cHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHhhcCCCC
Confidence 34556666666665543210 11122211 1235666788888888888877643333332 33344444444 777
Q ss_pred HHHHHHHHhhhhccCC-CCccchhHHHHHhHHhhhcchhh---------------HHHHHHHHHHH---hhcCChhHHhH
Q 002696 610 VLKVQNLLGHCAQHHE-KGEAYQGPAVLGIAMVAMAEELG---------------LEMAIRSLEHL---LQYGEQNIRRA 670 (891)
Q Consensus 610 ~~~iq~LL~~~~~~~~-d~~~vrr~avlglglI~~~~~~g---------------~e~~~~~l~~L---~~~~np~VR~g 670 (891)
.+.++.|+.+|..... ....++..|++++|-+..+--.. .+-++.+...| ....+..-+..
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 8888888777764321 11257778888887765332111 01122233333 24556678888
Q ss_pred HHHHhhhhccCCCcHHHHHHHHHhhcCC---chHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHHHHH
Q 002696 671 VPLALGLLCISNPKVNVMDTLSRLSHDT---DSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVR 744 (891)
Q Consensus 671 a~lALGL~~aGt~~~~aid~L~~l~~D~---d~~Vr~~AiiALGlV~aGtnn~rv~~~Lr~l~~~~~~d~~~~f~~~ 744 (891)
+.-|||=+ |.+.+++.|.++..+. ..++|..||-||.-+ +-....++.+.+-.+..-..+++..|.++-
T Consensus 510 ~LkaLgN~----g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~-~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~ 581 (618)
T PF01347_consen 510 YLKALGNL----GHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRL-AKHCPEKVREILLPIFMNTTEDPEVRIAAY 581 (618)
T ss_dssp HHHHHHHH----T-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTG-GGT-HHHHHHHHHHHHH-TTS-HHHHHHHH
T ss_pred HHHHhhcc----CCchhhHHHHhHhhhccccchHHHHHHHHHHHHH-hhcCcHHHHHHHHHHhcCCCCChhHHHHHH
Confidence 88888865 4567899999987666 678999999999866 233333555655555444345555555553
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=89.08 E-value=44 Score=40.43 Aligned_cols=208 Identities=12% Similarity=-0.003 Sum_probs=100.3
Q ss_pred HHHHHHHHHhc-CCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHH
Q 002696 500 QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 578 (891)
Q Consensus 500 ~v~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~ 578 (891)
+..+.+...+. |+. ..+ +-..+|.++...++.+.+...++...+..++ .. .-...+|..+...|+-+++.
T Consensus 322 ~A~~~~~~Al~ldP~-~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~-~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 322 KAKEHAIKATELDHN-NPQ----ALGLLGLINTIHSEYIVGSLLFKQANLLSPI---SA-DIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred HHHHHHHHHHhcCCC-CHH----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CH-HHHHHHHHHHHHCCCHHHHH
Confidence 44455555554 432 223 3345566665566555544444443332222 11 12234566777778877777
Q ss_pred HHHHHHhhchhhhhhhhhHHHHHHHHhcCCCH-HHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHH
Q 002696 579 ATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV-LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLE 657 (891)
Q Consensus 579 ~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~-~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~ 657 (891)
..++.....+..... ..+..+.++.-.|+. ++++.+.........+ .......+|..+...|+. +.+...+.
T Consensus 393 ~~~~~Al~l~P~~~~--~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~--~~~~~~~la~~l~~~G~~---~eA~~~~~ 465 (553)
T PRK12370 393 QTINECLKLDPTRAA--AGITKLWITYYHTGIDDAIRLGDELRSQHLQD--NPILLSMQVMFLSLKGKH---ELARKLTK 465 (553)
T ss_pred HHHHHHHhcCCCChh--hHHHHHHHHHhccCHHHHHHHHHHHHHhcccc--CHHHHHHHHHHHHhCCCH---HHHHHHHH
Confidence 777765544322111 112223333345663 3444333322211111 223345566666666776 67777777
Q ss_pred HHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCC---chHHHHHHHHHHHHHcCCCCchHHHHHHHHhhh
Q 002696 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT---DSEVAMAAVISLGLIGSGTNNARIAGMLRNLSS 731 (891)
Q Consensus 658 ~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~---d~~Vr~~AiiALGlV~aGtnn~rv~~~Lr~l~~ 731 (891)
.+... +| -...+...++..+++.++ ++...|.++.... ....+. +.+|.+..++++-+.+++++.+
T Consensus 466 ~~~~~-~~-~~~~~~~~l~~~~~~~g~-~a~~~l~~ll~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~ 534 (553)
T PRK12370 466 EISTQ-EI-TGLIAVNLLYAEYCQNSE-RALPTIREFLESEQRIDNNPGL-----LPLVLVAHGEAIAEKMWNKFKN 534 (553)
T ss_pred Hhhhc-cc-hhHHHHHHHHHHHhccHH-HHHHHHHHHHHHhhHhhcCchH-----HHHHHHHHhhhHHHHHHHHhhc
Confidence 66443 22 233344455555555554 5555555543211 111111 5556666667777777766544
No 57
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=88.84 E-value=43 Score=37.21 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=79.8
Q ss_pred HHHHHhcccccccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCC-hhhHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 002696 413 SAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND-CDPALALLSEYVGREDACIRIGAIMGLGI 491 (891)
Q Consensus 413 sA~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e-~d~~l~lL~~~L~~~~~~v~~gA~lGLGl 491 (891)
....++.....++.+++...+.+.+.........-.+ ++.....|.... .+.+...+........... -+..-+|.
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~a~ 122 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW--YLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH--HHHHHHHH
Confidence 4455556667788888888887776532222222222 333333332221 1113333332112111122 22223444
Q ss_pred HhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhH-HHHHHHHHh
Q 002696 492 SYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLT-RLIPLGLGL 568 (891)
Q Consensus 492 ay~Gs~~-~~v~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~-r~~~lglgL 568 (891)
++...++ ++..+.+...+. ++.. ..+...+|.++...+..+.....++......+.. ..... -...++..+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~-----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~-~~~~~~~~~~la~~~ 196 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDD-----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS-SMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC-----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC-cchhHHHHHHHHHHH
Confidence 4444444 456666666664 2221 1466778888887777655555554333221111 11111 122355556
Q ss_pred hhcCChhhHHHHHHHHh
Q 002696 569 LYLGKQESVEATAEVSK 585 (891)
Q Consensus 569 l~lG~~e~~~~li~~L~ 585 (891)
...|+.+++...++...
T Consensus 197 ~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 197 LERGDYEAALAIYDTHI 213 (355)
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 66688888888887754
No 58
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=88.03 E-value=51 Score=39.70 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=81.7
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHhhcCCCC-HHHHHHHHHHHHHHh-ccCCCHHHHHHHHHHhc----C--CCCchHHHH
Q 002696 449 LLGVGIVNCGIRNDCDPALALLSEYVGRED-ACIRIGAIMGLGISY-AGTQNDQIRHKLSTILN----D--AKSPLDVIA 520 (891)
Q Consensus 449 llaLGli~~G~~~e~d~~l~lL~~~L~~~~-~~v~~gA~lGLGlay-~Gs~~~~v~e~L~~~L~----d--~~~~~e~~~ 520 (891)
.=|+|+.+.-.+.+. -++.-|.+++..+. -.-+++-+++.-.+. +=-.|.+....+.|.|. | ..+.+|++
T Consensus 208 YHalGlLyq~kr~dk-ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~A- 285 (898)
T COG5240 208 YHALGLLYQSKRTDK-MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAA- 285 (898)
T ss_pred HHHHHHHHHHhcccH-HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHH-
Confidence 446788877555442 13444455655433 112222222222110 11245677788888875 2 23556653
Q ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHH----HHhhhcCChhhHHHHHHHHhhchh-hhhhhh
Q 002696 521 FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLG----LGLLYLGKQESVEATAEVSKTFNE-KIRKYC 595 (891)
Q Consensus 521 ~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lg----lgLl~lG~~e~~~~li~~L~~~~~-~i~r~~ 595 (891)
-+.-++..=.+|+..-+.+-.-++.++.. +....||.++- +++.+-.+--.|..-+|.|..+.+ .|.-|+
T Consensus 286 r~v~~~~~~nv~~~~~~~~vs~L~~fL~s-----~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyA 360 (898)
T COG5240 286 RAVCALSEENVGSQFVDQTVSSLRTFLKS-----TRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYA 360 (898)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHH
Confidence 23344555556666544333334443321 44567777743 233333333345555666655433 233343
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHhhhhc
Q 002696 596 DMTLLSCAYAGTGNVLKVQNLLGHCAQ 622 (891)
Q Consensus 596 ~~~~~glAyaGTGn~~~iq~LL~~~~~ 622 (891)
-. ....||+.+-|.+|.....+
T Consensus 361 IT-----tLLKTGt~e~idrLv~~I~s 382 (898)
T COG5240 361 IT-----TLLKTGTEETIDRLVNLIPS 382 (898)
T ss_pred HH-----HHHHcCchhhHHHHHHHHHH
Confidence 22 24689999999988765543
No 59
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.40 E-value=78 Score=39.60 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=62.1
Q ss_pred HHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC--CHHHHHHHHH
Q 002696 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ--NDQIRHKLST 507 (891)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~--~~~v~e~L~~ 507 (891)
++.+.+-|+.++.-+|+.||-.+.-|.-..... -++...++...++++++|..|+.++--.|---. ..++.+.+..
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRvp~IaP--I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~ 187 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRVPMIAP--IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKK 187 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHH--HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHH
Confidence 344556677888899999998888775433221 133455677788889999999888888774322 2356666666
Q ss_pred HhcCCCCchHHHHHHHHHhhhh
Q 002696 508 ILNDAKSPLDVIAFSAISLGLI 529 (891)
Q Consensus 508 ~L~d~~~~~e~~~~AaLaLGLi 529 (891)
.|.|.+ .-|...|.+|.--|
T Consensus 188 LLaD~s--plVvgsAv~AF~ev 207 (968)
T KOG1060|consen 188 LLADRS--PLVVGSAVMAFEEV 207 (968)
T ss_pred HhcCCC--CcchhHHHHHHHHh
Confidence 667753 33445566665443
No 60
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=87.07 E-value=90 Score=38.86 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=74.1
Q ss_pred HHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHh
Q 002696 615 NLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 694 (891)
Q Consensus 615 ~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l 694 (891)
.||....++.. .+||+|+=..|+|+ +-||-+.+..++-.-+...+-+-|-+..+|+|++.--++--.++-.|..=
T Consensus 929 eLlelLkahkK---~iRRaa~nTfG~Ia--kaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmne 1003 (1172)
T KOG0213|consen 929 ELLELLKAHKK---EIRRAAVNTFGYIA--KAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNE 1003 (1172)
T ss_pred HHHHHHHHHHH---HHHHHHHhhhhHHH--HhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhh
Confidence 45666666544 69999999999995 55776767766554456778889999999999987777777777766555
Q ss_pred hcCCchHHHHHHHHHHHHHcCCCC
Q 002696 695 SHDTDSEVAMAAVISLGLIGSGTN 718 (891)
Q Consensus 695 ~~D~d~~Vr~~AiiALGlV~aGtn 718 (891)
=.-|..+|.++.+=||.+..--++
T Consensus 1004 YrtPe~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen 1004 YRTPEANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHH
Confidence 556889999999999998754333
No 61
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=86.95 E-value=8.4 Score=40.51 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHhhhhccCCC--------c---HHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCC
Q 002696 652 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNP--------K---VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGT 717 (891)
Q Consensus 652 ~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~--------~---~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGt 717 (891)
....+...+.+.||.+|..++-.+..+.-..+ . ..++..+.++..|++..||..|.-++..+....
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 37778888889999999999988877765555 1 346778889999999999999888887774433
No 62
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.92 E-value=19 Score=43.89 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=59.2
Q ss_pred hhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHH---HhccCC-----CH----HH
Q 002696 434 DKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGI---SYAGTQ-----ND----QI 501 (891)
Q Consensus 434 ~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGl---ay~Gs~-----~~----~v 501 (891)
..|..+.+..++..|+-|+=..+-|..- ....+....+++.+..+-+|.+|+-.+-+ .+.+.. ++ ++
T Consensus 204 ~~~~~~~D~~Vrt~A~eglL~L~eg~kL-~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 204 IYLEHDQDFRVRTHAVEGLLALSEGFKL-SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred HHHhcCCCcchHHHHHHHHHhhcccccc-cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 3444566777888887775444445432 23467777888999889999887555433 332221 11 23
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHH
Q 002696 502 RHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVA 539 (891)
Q Consensus 502 ~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~ 539 (891)
+..+-..+.|-+..+.| .|+=+||-. ++-+++++
T Consensus 283 F~~vC~~v~D~sl~VRV--~AaK~lG~~--~~vSee~i 316 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSVRV--EAAKALGEF--EQVSEEII 316 (823)
T ss_pred HHHHHHHHhcCceeeee--hHHHHhchH--HHhHHHHH
Confidence 34444555676665555 577788863 34444443
No 63
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.33 E-value=13 Score=42.36 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHhhcCCCCCh-hhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHH--------HHHHHHHHhcCCC
Q 002696 443 HVIAGALLGVGIVNCGIRNDC-DPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQ--------IRHKLSTILNDAK 513 (891)
Q Consensus 443 ~~k~GAllaLGli~~G~~~e~-d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~~--------v~e~L~~~L~d~~ 513 (891)
|--.||++++--+.-+.+.-. --.+..|...+++.+.-+|.=++-++|.+.+.-.+.. ++..|...+.|.
T Consensus 185 rnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~- 263 (550)
T KOG4224|consen 185 RNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG- 263 (550)
T ss_pred HHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC-
Confidence 444566666553332211000 0034567788888888999999999999877544332 444455444443
Q ss_pred CchHHHHHHHHHhhhhh
Q 002696 514 SPLDVIAFSAISLGLIY 530 (891)
Q Consensus 514 ~~~e~~~~AaLaLGLi~ 530 (891)
+..+.+.|++|||-+.
T Consensus 264 -s~kvkcqA~lALrnla 279 (550)
T KOG4224|consen 264 -SDKVKCQAGLALRNLA 279 (550)
T ss_pred -ChHHHHHHHHHHhhhc
Confidence 4467778999999875
No 64
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=86.01 E-value=1.1e+02 Score=38.75 Aligned_cols=167 Identities=8% Similarity=0.014 Sum_probs=98.4
Q ss_pred HHHHhhhcCChhhHHHHHHHHhhchhhhh---hhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCC------------C-
Q 002696 564 LGLGLLYLGKQESVEATAEVSKTFNEKIR---KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEK------------G- 627 (891)
Q Consensus 564 lglgLl~lG~~e~~~~li~~L~~~~~~i~---r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d------------~- 627 (891)
+|..++..|+.+++...++.+...+ |.. .......++.+|.-.|+......++.-+.+...+ +
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 4667777888899988888765432 221 1223445566788999976655555443332110 0
Q ss_pred ccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCc-HHHHHHHHHh-hcCCchHHHHH
Q 002696 628 EAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRL-SHDTDSEVAMA 705 (891)
Q Consensus 628 ~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~-~~aid~L~~l-~~D~d~~Vr~~ 705 (891)
.........+..+...|+. +.+...+..+......+. .+-+.+|.+....++ .++++.|.+. ..+|++. .
T Consensus 357 ~~~~a~~~~a~~l~~~g~~---~eA~~~l~~al~~~P~n~--~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~---~ 428 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDL---PQAEMRARELAYNAPGNQ--GLRIDYASVLQARGWPRAAENELKKAEVLEPRNI---N 428 (765)
T ss_pred hHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---H
Confidence 0122234556666777776 888888888765432222 234455555544443 4566677765 4567653 2
Q ss_pred HHHHHHHHcCCCCc-hHHHHHHHHhhhhhccChhh
Q 002696 706 AVISLGLIGSGTNN-ARIAGMLRNLSSYYYKDANL 739 (891)
Q Consensus 706 AiiALGlV~aGtnn-~rv~~~Lr~l~~~~~~d~~~ 739 (891)
+.+++|++..+.++ .+..+.++++.+..-.|+.+
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 45677777777776 45567777777665556543
No 65
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=85.32 E-value=4.3 Score=50.34 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=49.6
Q ss_pred HHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 002696 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (891)
Q Consensus 658 ~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~ 714 (891)
+=+++.||.||..|.=.|+.+-.+.=...+++.+.+..+|+++.||++|++|++=+.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 334778999999999999999777667777888999999999999999999998776
No 66
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.12 E-value=1.4 Score=31.87 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=18.2
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHH
Q 002696 688 MDTLSRLSHDTDSEVAMAAVISLGLI 713 (891)
Q Consensus 688 id~L~~l~~D~d~~Vr~~AiiALGlV 713 (891)
+..|.++.+|++..||.+|+.++|-+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45566777788888888887777765
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=83.73 E-value=1.1e+02 Score=37.00 Aligned_cols=254 Identities=10% Similarity=-0.021 Sum_probs=121.9
Q ss_pred chhhHHhHhhhhcCCCchhHHHHHHHHHHhh-----cCCC---CChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC
Q 002696 426 VDSGLAQIDKYFHSTDNHVIAGALLGVGIVN-----CGIR---NDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ 497 (891)
Q Consensus 426 ~~~~l~~l~~yL~s~~~~~k~GAllaLGli~-----~G~~---~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~ 497 (891)
.++|+..+.+.+.....+..+-+ ++|.++ .|.. .+.+.+...+...+.-...... +...+|.++...+
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~--~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~--a~~~lg~~~~~~g 352 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYC--ALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ--ALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHH--HHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHcc
Confidence 35677777777765444444333 333222 1211 1123466666666653322222 2234455554444
Q ss_pred C-HHHHHHHHHHhc-CCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChh
Q 002696 498 N-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE 575 (891)
Q Consensus 498 ~-~~v~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e 575 (891)
+ ++..+.+...+. +++ +.+ +-+.+|.++...++.+.+...+....+..+. ..... ...+..+...|+-+
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~----a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~---~~~~~-~~~~~~~~~~g~~e 423 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SAD----IKYYYGWNLFMAGQLEEALQTINECLKLDPT---RAAAG-ITKLWITYYHTGID 423 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---ChhhH-HHHHHHHHhccCHH
Confidence 4 455666666664 432 222 3455666666666655444444443333222 11111 12233455668777
Q ss_pred hHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHH
Q 002696 576 SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRS 655 (891)
Q Consensus 576 ~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~ 655 (891)
++...++.+....+|- .......+|.+|...|+.......+.-...... ....+.-.++-+..+.. +.+...
T Consensus 424 eA~~~~~~~l~~~~p~-~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g---~~a~~~ 495 (553)
T PRK12370 424 DAIRLGDELRSQHLQD-NPILLSMQVMFLSLKGKHELARKLTKEISTQEI----TGLIAVNLLYAEYCQNS---ERALPT 495 (553)
T ss_pred HHHHHHHHHHHhcccc-CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc----hhHHHHHHHHHHHhccH---HHHHHH
Confidence 7766666544322221 122345678899999995544443332222211 12223333333333332 456666
Q ss_pred HHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHH
Q 002696 656 LEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEV 702 (891)
Q Consensus 656 l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~V 702 (891)
+..|..... -|..-+-.+.++++.-|+.+--..+.++-++.+..+
T Consensus 496 l~~ll~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 540 (553)
T PRK12370 496 IREFLESEQ--RIDNNPGLLPLVLVAHGEAIAEKMWNKFKNEDNIWF 540 (553)
T ss_pred HHHHHHHhh--HhhcCchHHHHHHHHHhhhHHHHHHHHhhccchHhh
Confidence 665543211 222222225555666678877777777766655443
No 68
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=83.51 E-value=2.7 Score=38.54 Aligned_cols=66 Identities=24% Similarity=0.306 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHhhhhccCCCc-------HHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 002696 652 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (891)
Q Consensus 652 ~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~-------~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtn 718 (891)
++.++.. +.++++.+|..++.+|+-++.+++. ..+++.|.++.+|++..|+..|+.+|+-+..+.+
T Consensus 9 i~~l~~~-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 9 LPALVSL-LSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHHHH-HHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 3444444 4677899999999999999877422 1456777888899999999999999999987664
No 69
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=82.25 E-value=2.6 Score=34.25 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=32.2
Q ss_pred cchhHHHHHhHHhhhcch-hhHHH---HHHHHHHHhhcCChhHHhHHHHHhhh
Q 002696 629 AYQGPAVLGIAMVAMAEE-LGLEM---AIRSLEHLLQYGEQNIRRAVPLALGL 677 (891)
Q Consensus 629 ~vrr~avlglglI~~~~~-~g~e~---~~~~l~~L~~~~np~VR~ga~lALGL 677 (891)
.||+.|+.+||-+.-..+ ..... +...+..++.+.++.||..++.|||-
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 468888888887654443 11122 22333445577888999999999984
No 70
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.62 E-value=3 Score=52.49 Aligned_cols=88 Identities=28% Similarity=0.281 Sum_probs=67.4
Q ss_pred cchhHHHHHhHHhhhcchhhHHHHHH-----H-HHHHhhcCChhHHhHHHHHhhhhccCCC-------cHHHHHHHHHhh
Q 002696 629 AYQGPAVLGIAMVAMAEELGLEMAIR-----S-LEHLLQYGEQNIRRAVPLALGLLCISNP-------KVNVMDTLSRLS 695 (891)
Q Consensus 629 ~vrr~avlglglI~~~~~~g~e~~~~-----~-l~~L~~~~np~VR~ga~lALGL~~aGt~-------~~~aid~L~~l~ 695 (891)
+.|..|+.-+|-|.-+-+.|++.|.. + +++|-...+|-.|..+|++||.+..-.. ...|.+.|..+.
T Consensus 572 EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~L 651 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLL 651 (1387)
T ss_pred HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHh
Confidence 56777888888887777788776654 1 3444332369999999999999875433 334678899999
Q ss_pred cCCchHHHHHHHHHHHHHcCC
Q 002696 696 HDTDSEVAMAAVISLGLIGSG 716 (891)
Q Consensus 696 ~D~d~~Vr~~AiiALGlV~aG 716 (891)
+|+...||-+|+||||-..-+
T Consensus 652 sD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 652 SDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cCccHHHHHHHHHHHHHHhcc
Confidence 999999999999999976654
No 71
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=81.61 E-value=11 Score=38.65 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=59.9
Q ss_pred cchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccC---CCcHHHHHHHHHhhcCCchHHHHH
Q 002696 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCIS---NPKVNVMDTLSRLSHDTDSEVAMA 705 (891)
Q Consensus 629 ~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aG---t~~~~aid~L~~l~~D~d~~Vr~~ 705 (891)
.+|..+++++|=++.+-|--.|.....+-..+++.+|.||+.+..+|.-+-.. ......+..+-.+..|+++.||..
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Confidence 68999999999777776622233333333445788999999999998866322 122233233334568999999999
Q ss_pred HHHHHHHHcCC
Q 002696 706 AVISLGLIGSG 716 (891)
Q Consensus 706 AiiALGlV~aG 716 (891)
|...+.-+...
T Consensus 83 A~~~~~e~~~~ 93 (178)
T PF12717_consen 83 ARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHh
Confidence 99888888766
No 72
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=81.43 E-value=1.5e+02 Score=36.84 Aligned_cols=263 Identities=10% Similarity=-0.012 Sum_probs=136.1
Q ss_pred cccccccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC
Q 002696 419 GMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN 498 (891)
Q Consensus 419 GlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~ 498 (891)
-..+.|+.++++.++..-+........+-..+|......|.. +.+...+...+....... .+...+|.++...++
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~---~~A~~~l~~~l~~~P~~~--~a~~~la~~l~~~g~ 125 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQP---DAVLQVVNKLLAVNVCQP--EDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCH---HHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCC
Confidence 345578999999888877765444444444555555555543 347777777665322111 234566677666654
Q ss_pred -HHHHHHHHHHhc-CCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhh
Q 002696 499 -DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES 576 (891)
Q Consensus 499 -~~v~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~ 576 (891)
++..+.+...+. ++. ..+ +-..+|.++...++.+-+...+..+....+. ..-... .+ ..+...|+-++
T Consensus 126 ~~~Ai~~l~~Al~l~P~-~~~----a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~---~~~a~~-~~-~~l~~~g~~~e 195 (656)
T PRK15174 126 YATVADLAEQAWLAFSG-NSQ----IFALHLRTLVLMDKELQAISLARTQAQEVPP---RGDMIA-TC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHHHHHHHHHHhCCC-cHH----HHHHHHHHHHHCCChHHHHHHHHHHHHhCCC---CHHHHH-HH-HHHHHcCCHHH
Confidence 456667776665 332 222 4455666677777655444444433322221 111111 11 23555677777
Q ss_pred HHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhh-HHHHHHH
Q 002696 577 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG-LEMAIRS 655 (891)
Q Consensus 577 ~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g-~e~~~~~ 655 (891)
+...++.+.... |..........+.++...|+.......+.-+.....+ +......+|..+...|+.-. .+.+...
T Consensus 196 A~~~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~--~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 196 DHDLARALLPFF-ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD--GAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHhcC-CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 777777654432 1111112234567788899865444444333322222 33334446666666676510 0136777
Q ss_pred HHHHhhcCChhHHhHHHHHhhhhccCCCc-HHHHHHHHHhh-cCCchH
Q 002696 656 LEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDSE 701 (891)
Q Consensus 656 l~~L~~~~np~VR~ga~lALGL~~aGt~~-~~aid~L~~l~-~D~d~~ 701 (891)
+.........+.+ +-..+|.++...++ .+++..+.+.. .+|+..
T Consensus 273 ~~~Al~l~P~~~~--a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~ 318 (656)
T PRK15174 273 WRHALQFNSDNVR--IVTLYADALIRTGQNEKAIPLLQQSLATHPDLP 318 (656)
T ss_pred HHHHHhhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 7776654322232 23344444443333 45666776653 456543
No 73
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=81.20 E-value=17 Score=45.65 Aligned_cols=102 Identities=23% Similarity=0.242 Sum_probs=77.2
Q ss_pred HHHHHHHhhhhccCCCCccchhHHHHHhHHh--hhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhh----hhccCCCc
Q 002696 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMV--AMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALG----LLCISNPK 684 (891)
Q Consensus 611 ~~iq~LL~~~~~~~~d~~~vrr~avlglglI--~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALG----L~~aGt~~ 684 (891)
..|.++|.....+ + =-+|+..+.+|.++ .+|.++-.+....++..+..+..|.||.+++-.|- ++.+..-.
T Consensus 557 ~~i~k~L~~~~q~-~--y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~ 633 (759)
T KOG0211|consen 557 EEIPKLLAMDLQD-N--YLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD 633 (759)
T ss_pred HhhHHHHHHhcCc-c--cchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH
Confidence 3445555544332 1 14677777776664 36777777888888999999999999999987764 44566667
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 002696 685 VNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 715 (891)
Q Consensus 685 ~~aid~L~~l~~D~d~~Vr~~AiiALGlV~a 715 (891)
..+..+|..+..|++-+||..|+.|.|.|..
T Consensus 634 ~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 634 EEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 7788888999999999999999999999864
No 74
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.53 E-value=1e+02 Score=34.45 Aligned_cols=184 Identities=13% Similarity=0.073 Sum_probs=97.2
Q ss_pred hcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCC
Q 002696 530 YVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGN 609 (891)
Q Consensus 530 ~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn 609 (891)
|.|-..++.+...+..+..+ ..-..++-+..++--|....++.++.......... ....+.++-.|..+|.
T Consensus 113 F~G~qPesqlr~~ld~~~~~-------~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~--~~~~~~la~~~l~~g~ 183 (304)
T COG3118 113 FQGAQPESQLRQFLDKVLPA-------EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN--SEAKLLLAECLLAAGD 183 (304)
T ss_pred cCCCCcHHHHHHHHHHhcCh-------HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc--chHHHHHHHHHHHcCC
Confidence 45666666666666544321 12233444555666666666666666544322111 3345566677788888
Q ss_pred HHHHHHHHhhhhccCCCCccchhHHHHH-hHHhhhcchhhHHHHHHHHHHHhhcC-ChhHHhHHHHHhhhhccCCCcHHH
Q 002696 610 VLKVQNLLGHCAQHHEKGEAYQGPAVLG-IAMVAMAEELGLEMAIRSLEHLLQYG-EQNIRRAVPLALGLLCISNPKVNV 687 (891)
Q Consensus 610 ~~~iq~LL~~~~~~~~d~~~vrr~avlg-lglI~~~~~~g~e~~~~~l~~L~~~~-np~VR~ga~lALGL~~aGt~~~~a 687 (891)
++..+.+|.-.-.+..+ -++.++.+ |.|+---.. ......+...+..+- |+..|...+..+-. .| -+..+
T Consensus 184 ~e~A~~iL~~lP~~~~~---~~~~~l~a~i~ll~qaa~--~~~~~~l~~~~aadPdd~~aa~~lA~~~~~--~g-~~e~A 255 (304)
T COG3118 184 VEAAQAILAALPLQAQD---KAAHGLQAQIELLEQAAA--TPEIQDLQRRLAADPDDVEAALALADQLHL--VG-RNEAA 255 (304)
T ss_pred hHHHHHHHHhCcccchh---hHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHhCCCCHHHHHHHHHHHHH--cC-CHHHH
Confidence 88888888765443332 12222222 333311111 022345555665543 55555443333322 22 23345
Q ss_pred HHHHHHh----hcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhh
Q 002696 688 MDTLSRL----SHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSY 732 (891)
Q Consensus 688 id~L~~l----~~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~Lr~l~~~ 732 (891)
.+.|..+ ..+.|+.+|..-+=-+.+ +|+.+|.+.+.+|+|++.
T Consensus 256 le~Ll~~l~~d~~~~d~~~Rk~lle~f~~--~g~~Dp~~~~~RRkL~sl 302 (304)
T COG3118 256 LEHLLALLRRDRGFEDGEARKTLLELFEA--FGPADPLVLAYRRKLYSL 302 (304)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 5544433 345677888765444444 488889999999999874
No 75
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=80.32 E-value=2.1e+02 Score=37.96 Aligned_cols=287 Identities=13% Similarity=0.097 Sum_probs=155.3
Q ss_pred Hhcccc--cccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCC-------HHHHHHHHH
Q 002696 417 SLGMIL--LWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED-------ACIRIGAIM 487 (891)
Q Consensus 417 slGlI~--~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~-------~~v~~gA~l 487 (891)
.+|.++ .|+.++|...++.-+.....+ ..++.+++.++... ..+.++.++........ ...+..+..
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~--~~a~~~L~~l~~~~--~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 465 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALRMDPGN--TNAVRGLANLYRQQ--SPEKALAFIASLSASQRRSIDDIERSLQNDRLA 465 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhc--CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence 344444 578888988888777532222 34667777776432 22346666654332211 112223445
Q ss_pred HHHHHhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHH
Q 002696 488 GLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLG 565 (891)
Q Consensus 488 GLGlay~Gs~~-~~v~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lg 565 (891)
.+|-++...++ ++..+.+...+. +++ +. .+.+.+|.++.-.++.+.+...++.+....+. ++-.+ .+.+
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~----~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~---~~~~~-~a~a 536 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDPG-SV----WLTYRLAQDLRQAGQRSQADALMRRLAQQKPN---DPEQV-YAYG 536 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHH-HHHH
Confidence 56666666555 466677777765 432 22 35678888888888887777777666543322 22222 2234
Q ss_pred HHhhhcCChhhHHHHHHHHhhc--hhhhh------hhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHH
Q 002696 566 LGLLYLGKQESVEATAEVSKTF--NEKIR------KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLG 637 (891)
Q Consensus 566 lgLl~lG~~e~~~~li~~L~~~--~~~i~------r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlg 637 (891)
+-+...|+.+++...++.+... .+.+. .....+..+-+|...|+......++.. +.+ +.+....+|
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---~p~---~~~~~~~La 610 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---QPP---STRIDLTLA 610 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---CCC---CchHHHHHH
Confidence 4444456666666666554321 01111 112344566678889998777777762 222 344445555
Q ss_pred hHHhhhcchhhHHHHHHHHHHHhhc--CChhHHhHHHHHhhhhccCCC-cHHHHHHHHHhhc-CCchHHHHHHHHHHHHH
Q 002696 638 IAMVAMAEELGLEMAIRSLEHLLQY--GEQNIRRAVPLALGLLCISNP-KVNVMDTLSRLSH-DTDSEVAMAAVISLGLI 713 (891)
Q Consensus 638 lglI~~~~~~g~e~~~~~l~~L~~~--~np~VR~ga~lALGL~~aGt~-~~~aid~L~~l~~-D~d~~Vr~~AiiALGlV 713 (891)
..+...|+. +.+...+...+.. .|+..+.+. |.++...+ ..++++.+.++.. +|++. ++...+|.+
T Consensus 611 ~~~~~~g~~---~~A~~~y~~al~~~P~~~~a~~~l----a~~~~~~g~~~eA~~~l~~ll~~~p~~~---~~~~~la~~ 680 (1157)
T PRK11447 611 DWAQQRGDY---AAARAAYQRVLTREPGNADARLGL----IEVDIAQGDLAAARAQLAKLPATANDSL---NTQRRVALA 680 (1157)
T ss_pred HHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHH----HHHHHHCCCHHHHHHHHHHHhccCCCCh---HHHHHHHHH
Confidence 556666665 7888888877654 234444433 33332223 4466777777653 33332 223445555
Q ss_pred cCCCCc-hHHHHHHHHhhhh
Q 002696 714 GSGTNN-ARIAGMLRNLSSY 732 (891)
Q Consensus 714 ~aGtnn-~rv~~~Lr~l~~~ 732 (891)
....++ .+..++++++.+.
T Consensus 681 ~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhh
Confidence 555554 3445566665544
No 76
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.50 E-value=1.2e+02 Score=37.76 Aligned_cols=256 Identities=14% Similarity=0.123 Sum_probs=132.2
Q ss_pred cCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHhcCCC
Q 002696 438 HSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ----NDQIRHKLSTILNDAK 513 (891)
Q Consensus 438 ~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~----~~~v~e~L~~~L~d~~ 513 (891)
+++++-+|+-|+=.+|.+.-+...+ -+..=|...+.+.++++|.-|.++..-.|--.. +..+.+.|...+.|++
T Consensus 96 ~d~np~iR~lAlrtm~~l~v~~i~e--y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~ 173 (734)
T KOG1061|consen 96 EDPNPLIRALALRTMGCLRVDKITE--YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSN 173 (734)
T ss_pred CCCCHHHHHHHhhceeeEeehHHHH--HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCC
Confidence 4567788887777777765432222 233444567788899999988888776654332 2357788888888653
Q ss_pred CchHHHHHHHHHhhhhhcCCC-------CHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChh-hHHHHHHHHh
Q 002696 514 SPLDVIAFSAISLGLIYVGSC-------NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE-SVEATAEVSK 585 (891)
Q Consensus 514 ~~~e~~~~AaLaLGLi~lGs~-------n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e-~~~~li~~L~ 585 (891)
..|++.|-=||-.|.--+. +.+.+..++..|-+ -+.|.+...+..-.-|.-+.+ .++.+++.+.
T Consensus 174 --p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~e------c~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~ 245 (734)
T KOG1061|consen 174 --PMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNE------CTEWGQIFILDCLAEYVPKDSREAEDICERLT 245 (734)
T ss_pred --chHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHH------hhhhhHHHHHHHHHhcCCCCchhHHHHHHHhh
Confidence 3443344444555543332 23344444444322 235877776654433443333 6666776654
Q ss_pred hchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhc---c----CC--------CCccchhHHHHHhHHhhhcchhhHH
Q 002696 586 TFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQ---H----HE--------KGEAYQGPAVLGIAMVAMAEELGLE 650 (891)
Q Consensus 586 ~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~---~----~~--------d~~~vrr~avlglglI~~~~~~g~e 650 (891)
. ...++.. ..=-+.++++-+++.+... . .. -.+.++-.+.=-+.+|....| ..
T Consensus 246 p----~Lqh~n~------avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p--~~ 313 (734)
T KOG1061|consen 246 P----RLQHANS------AVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRP--EI 313 (734)
T ss_pred h----hhccCCc------ceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhCh--HH
Confidence 2 1111100 0011222333333322221 0 00 002345556666788887777 12
Q ss_pred HHHHHHHHHhhcCChh-HHhHH-HHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 002696 651 MAIRSLEHLLQYGEQN-IRRAV-PLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (891)
Q Consensus 651 ~~~~~l~~L~~~~np~-VR~ga-~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aG 716 (891)
...++---+..|.||. |+--= =.-.+++ .++.-.+++.-|..++.+.|.+..+-||-|+|=+...
T Consensus 314 ~~~~~~~Ff~kynDPiYvK~eKleil~~la-~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik 380 (734)
T KOG1061|consen 314 LKVEIKVFFCKYNDPIYVKLEKLEILIELA-NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIK 380 (734)
T ss_pred HHhHhHeeeeecCCchhhHHHHHHHHHHHh-hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhh
Confidence 2222222334566662 11110 0111222 2233445677778888888877777788888877654
No 77
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=77.82 E-value=99 Score=37.45 Aligned_cols=255 Identities=16% Similarity=0.152 Sum_probs=126.3
Q ss_pred hhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhcc------CCCHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCH
Q 002696 463 CDPALALLSEYVGREDACIRIGAIMGLGISYAG------TQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE 536 (891)
Q Consensus 463 ~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~G------s~~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~ 536 (891)
.+++...|..+|.++....|.+|+--|.-..+- .||.++-. .+.|.+-+ .+.+|+--+ +-||++
T Consensus 301 ~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEs----LIsd~Nr~-----IstyAITtL-LKTGt~ 370 (898)
T COG5240 301 VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVES----LISDENRT-----ISTYAITTL-LKTGTE 370 (898)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHH----Hhhccccc-----chHHHHHHH-HHcCch
Confidence 367888888899988888898888777655443 34544333 23443222 244555443 578888
Q ss_pred HHHHHHHHHHhhc-Ccc-ccCchhHHHHHHHHHhhhcCChhhH-HHHHHHHhhchh-hhhhhh-hHHHHHHHHhcCCCHH
Q 002696 537 EVAQAIIFALMDR-SES-ELGEPLTRLIPLGLGLLYLGKQESV-EATAEVSKTFNE-KIRKYC-DMTLLSCAYAGTGNVL 611 (891)
Q Consensus 537 ~~~e~ll~~L~~~-~~t-~l~e~~~r~~~lglgLl~lG~~e~~-~~li~~L~~~~~-~i~r~~-~~~~~glAyaGTGn~~ 611 (891)
+-++.++..+... ++. +=-..++-=+.-.+.|.|-.++... +=+...|..... .+-++. .++.-++-|.--..+.
T Consensus 371 e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr 450 (898)
T COG5240 371 ETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER 450 (898)
T ss_pred hhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH
Confidence 8887777654321 211 0001111112234455554333321 111222222110 111110 0111111122111222
Q ss_pred HHHHHHhhhhccCCCCccchhHHHHHhHHhh-----hcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhc--cC--C
Q 002696 612 KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVA-----MAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLC--IS--N 682 (891)
Q Consensus 612 ~iq~LL~~~~~~~~d~~~vrr~avlglglI~-----~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~--aG--t 682 (891)
+...|-.|..+. ..-..+|=-++++. ..+| .--+.-+.++++ -.|.+||.|+--||.-.. ++ +
T Consensus 451 aLe~LC~fIEDc-----ey~~I~vrIL~iLG~EgP~a~~P--~~yvrhIyNR~i-LEN~ivRsaAv~aLskf~ln~~d~~ 522 (898)
T COG5240 451 ALEVLCTFIEDC-----EYHQITVRILGILGREGPRAKTP--GKYVRHIYNRLI-LENNIVRSAAVQALSKFALNISDVV 522 (898)
T ss_pred HHHHHHHHHhhc-----chhHHHHHHHHHhcccCCCCCCc--chHHHHHHHHHH-HhhhHHHHHHHHHHHHhccCccccc
Confidence 333333333211 22233333334432 1122 122334455554 347899999999884321 11 2
Q ss_pred CcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC-c--------hHHHHHHHHhhhhhcc
Q 002696 683 PKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN-N--------ARIAGMLRNLSSYYYK 735 (891)
Q Consensus 683 ~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtn-n--------~rv~~~Lr~l~~~~~~ 735 (891)
-...+...|.+..+|.|+.||-.|-|++-.+--..- . +.+..+-+.+..|.++
T Consensus 523 ~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~pl~~sd~~~dipsle~~l~~yIse 584 (898)
T COG5240 523 SPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEPLFSSDELGDIPSLELELIGYISE 584 (898)
T ss_pred cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhhccccccccCCcchhHHhhheeecc
Confidence 233456689999999999999999999887752211 1 2456666777777655
No 78
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=75.93 E-value=2.9 Score=29.44 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=21.3
Q ss_pred HHhHHHHHhhhhccCCCcHHHHHHHHHhhcC
Q 002696 667 IRRAVPLALGLLCISNPKVNVMDTLSRLSHD 697 (891)
Q Consensus 667 VR~ga~lALGL~~aGt~~~~aid~L~~l~~D 697 (891)
||+.++.+||-+ +++++++.|.+...|
T Consensus 1 VR~~Aa~aLg~i----gd~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQI----GDPRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-----SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----CCHHHHHHHHHHhcC
Confidence 789999999988 778888888776554
No 79
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=71.35 E-value=30 Score=37.80 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHH------HHHHHhhcCCchHHHHHHHHHHHHH
Q 002696 650 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVM------DTLSRLSHDTDSEVAMAAVISLGLI 713 (891)
Q Consensus 650 e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~ai------d~L~~l~~D~d~~Vr~~AiiALGlV 713 (891)
+...+++..|-...||.|+..+.+|||...+-+.+.+++ ..+..+.++|++.||..|+-|+.-.
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nl 81 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNL 81 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhc
Confidence 333444444434455666666666666654444444443 2344555666666665555555543
No 80
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=70.13 E-value=6.4 Score=28.00 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=23.7
Q ss_pred hHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCC
Q 002696 666 NIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT 698 (891)
Q Consensus 666 ~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~ 698 (891)
.||+.++.+||-+ +++++++.|..+..|+
T Consensus 2 ~vR~~aa~aLg~~----~~~~a~~~L~~~l~d~ 30 (30)
T smart00567 2 LVRHEAAFALGQL----GDEEAVPALIKALEDE 30 (30)
T ss_pred HHHHHHHHHHHHc----CCHhHHHHHHHHhcCC
Confidence 5899999999976 7788888888887764
No 81
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=69.34 E-value=38 Score=32.71 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=40.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhC-CChHHHHHHHHhcchhHHHHHHH
Q 002696 241 VLDIAYMIYLKFEEFPNALQIALFL-DNMQYVKQIFTSCDDLLRKKQFC 288 (891)
Q Consensus 241 vl~~~~~iy~~~~~~~~al~~al~l-~d~~~i~~i~~~~~d~~~~~Qla 288 (891)
+.+.++-+|.+.++|.+|+.++++- +|++...+.+.+..++..-.+++
T Consensus 84 l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~ 132 (140)
T smart00299 84 LYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVL 132 (140)
T ss_pred cHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHH
Confidence 5567888899999999999999987 89999999999987776555554
No 82
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.11 E-value=4e+02 Score=36.18 Aligned_cols=180 Identities=19% Similarity=0.243 Sum_probs=94.9
Q ss_pred hHHHHHHHhcccccccchhhHHhHhhhh-----------cCCCchhHHHHHHHH-HHhhcCCCCChh----hHHHHHHhh
Q 002696 410 GKMSAAASLGMILLWDVDSGLAQIDKYF-----------HSTDNHVIAGALLGV-GIVNCGIRNDCD----PALALLSEY 473 (891)
Q Consensus 410 ~k~sA~aslGlI~~~~~~~~l~~l~~yL-----------~s~~~~~k~GAllaL-Gli~~G~~~e~d----~~l~lL~~~ 473 (891)
.|.+|+.++|.|-. ++...+.+|+ |.++..++. |.-.+ +.+-.-..+-.| .++.-|...
T Consensus 973 Sk~GaAfGf~~i~~----~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~ 1047 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAK----QAGEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYLNEILDELLVN 1047 (1702)
T ss_pred cccchhhchHHHHH----HHHHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 58888888888764 2333344443 245544543 32221 222111000000 133334444
Q ss_pred cCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHh------cCC--CCchHHHHHHHHHhhhhhcCCCC-------HHH
Q 002696 474 VGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL------NDA--KSPLDVIAFSAISLGLIYVGSCN-------EEV 538 (891)
Q Consensus 474 L~~~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~~L------~d~--~~~~e~~~~AaLaLGLi~lGs~n-------~~~ 538 (891)
+.+..--+|.++|++|.=.--|...+++.+.+..+. +|+ +...++...++=+|+-+-+-.|+ .++
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence 445555688999999998888987777776665443 242 11235566778888877766553 467
Q ss_pred HHHHHHHHhhcCccccCchhHHHHHHH--HHhhh-cCC------hhhHHHHHHHHhhchhhhhhhh
Q 002696 539 AQAIIFALMDRSESELGEPLTRLIPLG--LGLLY-LGK------QESVEATAEVSKTFNEKIRKYC 595 (891)
Q Consensus 539 ~e~ll~~L~~~~~t~l~e~~~r~~~lg--lgLl~-lG~------~e~~~~li~~L~~~~~~i~r~~ 595 (891)
.+.++-.|.+..-- .+-+-+|-++++ +-|+- .|+ .+.+..+++.....++.+..|-
T Consensus 1128 l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1128 LDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred HHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHH
Confidence 77888887764211 011223333322 12221 132 2445556666666666555553
No 83
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=68.89 E-value=19 Score=40.51 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcC---CCCchHHHHHHHHHH
Q 002696 44 LKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETM---PDSDLKKYMADILSV 120 (891)
Q Consensus 44 ~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~---~~~~~k~~~AdilS~ 120 (891)
+.++|+..++.|.|...+-+..||+.+...++.... -.|+..++.+|...+++- ..++.+.+++-+++.
T Consensus 41 ~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~--------~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~L 112 (309)
T PF05004_consen 41 LEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYL--------PDFVEDRRETLLDALLKSLKKGKSEEQALAARALAL 112 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 357799999999999999999999999999987742 369999999988888752 233457788899999
Q ss_pred HhhhccC
Q 002696 121 LALTMSA 127 (891)
Q Consensus 121 l~~t~~~ 127 (891)
+++|.+.
T Consensus 113 l~ltlg~ 119 (309)
T PF05004_consen 113 LALTLGA 119 (309)
T ss_pred HhhhcCC
Confidence 9987653
No 84
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=68.64 E-value=3.7e+02 Score=35.25 Aligned_cols=234 Identities=10% Similarity=-0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 002696 446 AGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAIS 525 (891)
Q Consensus 446 ~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~~L~d~~~~~e~~~~AaLa 525 (891)
..+...+|.+......+. ++..+...+........ -+++|.++.-.++.+-.......+........ +.+.
T Consensus 477 ~~a~~~LG~~l~~~~~~e--Ai~a~~~Al~~~Pd~~~---~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~----a~~~ 547 (987)
T PRK09782 477 AAAWNRLAKCYRDTLPGV--ALYAWLQAEQRQPDAWQ---HRAVAYQAYQVEDYATALAAWQKISLHDMSNE----DLLA 547 (987)
T ss_pred HHHHHHHHHHHHhCCcHH--HHHHHHHHHHhCCchHH---HHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH----HHHH
Q ss_pred hhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHh
Q 002696 526 LGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYA 605 (891)
Q Consensus 526 LGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAya 605 (891)
+|.+.+..++.+.+...++......+.. ......++..+...|+-+++...++........ ......+|.++.
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~P~~----~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~---~~a~~~LA~~l~ 620 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRGLGD----NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS---ANAYVARATIYR 620 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHH
Q ss_pred cCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcH
Q 002696 606 GTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV 685 (891)
Q Consensus 606 GTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~ 685 (891)
..|+.......+.-+.....+ +.....-+|..+...|+. +.+...+...+.....+...---+|+.+...|....
T Consensus 621 ~lG~~deA~~~l~~AL~l~Pd--~~~a~~nLG~aL~~~G~~---eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 621 QRHNVPAAVSDLRAALELEPN--NSNYQAALGYALWDSGDI---AQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Q ss_pred HHHHHHHHhhcCCch
Q 002696 686 NVMDTLSRLSHDTDS 700 (891)
Q Consensus 686 ~aid~L~~l~~D~d~ 700 (891)
..-..-.-+.-+|+.
T Consensus 696 A~~~l~~Al~l~P~~ 710 (987)
T PRK09782 696 TQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHhcCCCC
No 85
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.53 E-value=2.2e+02 Score=35.45 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhcCccccCchhHHHHHHHH-Hhhhc--C--ChhhHHHHHHHHh-h--chhhhhhhhhHHHHHHHHhcC
Q 002696 536 EEVAQAIIFALMDRSESELGEPLTRLIPLGL-GLLYL--G--KQESVEATAEVSK-T--FNEKIRKYCDMTLLSCAYAGT 607 (891)
Q Consensus 536 ~~~~e~ll~~L~~~~~t~l~e~~~r~~~lgl-gLl~l--G--~~e~~~~li~~L~-~--~~~~i~r~~~~~~~glAyaGT 607 (891)
.+.+..++..+...+++ +++-+||=++-+ ++++= + ..+..+.+++.+. + +..|..|..++++++=----+
T Consensus 80 ~DlV~~~f~hlLRg~Es--kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTES--KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred hhHHHHHHHHHHhcccC--cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC
Confidence 34666666666654444 567777765443 44432 1 1123455555543 2 356788887776643222124
Q ss_pred CC--HHHHHHHHhhhhccCCCCccchhHHHHHhHH
Q 002696 608 GN--VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAM 640 (891)
Q Consensus 608 Gn--~~~iq~LL~~~~~~~~d~~~vrr~avlglgl 640 (891)
+| ..++..+......|.++ .|||+|.+.|.-
T Consensus 158 ~dee~~v~n~l~~liqnDpS~--EVRRaaLsnI~v 190 (892)
T KOG2025|consen 158 KDEECPVVNLLKDLIQNDPSD--EVRRAALSNISV 190 (892)
T ss_pred CCCcccHHHHHHHHHhcCCcH--HHHHHHHHhhcc
Confidence 44 46777777777778776 899998886653
No 86
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=68.36 E-value=7 Score=28.18 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=18.8
Q ss_pred HHHHHhhcCChhHHhHHHHHhhhh
Q 002696 655 SLEHLLQYGEQNIRRAVPLALGLL 678 (891)
Q Consensus 655 ~l~~L~~~~np~VR~ga~lALGL~ 678 (891)
.+-+++++.+|.||.+++.++|-+
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHH
Confidence 445666888999999999999965
No 87
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=68.09 E-value=1.3e+02 Score=29.87 Aligned_cols=53 Identities=17% Similarity=0.006 Sum_probs=21.8
Q ss_pred HHHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHH
Q 002696 565 GLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLL 617 (891)
Q Consensus 565 glgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL 617 (891)
|..+...|+-+.+...++.................+|..|...|+.......+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33344445545544444443322111111122334455566666654444433
No 88
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=67.34 E-value=3.9e+02 Score=34.94 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=52.8
Q ss_pred HhhhhcCCCchhHHHHHHHHHHhhcCCCCC-hhhHHHHHHhhcC-CCCHHHHHHHHHHHHHH-hccCCCH----HHHHHH
Q 002696 433 IDKYFHSTDNHVIAGALLGVGIVNCGIRND-CDPALALLSEYVG-REDACIRIGAIMGLGIS-YAGTQND----QIRHKL 505 (891)
Q Consensus 433 l~~yL~s~~~~~k~GAllaLGli~~G~~~e-~d~~l~lL~~~L~-~~~~~v~~gA~lGLGla-y~Gs~~~----~v~e~L 505 (891)
+-.-+.+.+..++..|.=|+|-++.--..+ .|.++.-..+++. -.+...=||||++|+-. ..|---. +|+..|
T Consensus 346 Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI 425 (1133)
T KOG1943|consen 346 LLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLI 425 (1133)
T ss_pred HHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 333345688999999999999998632211 1112222222221 12345667999999864 3443334 444444
Q ss_pred HHHhc-CCC-----C---chHHHHHHHHHhhhhh
Q 002696 506 STILN-DAK-----S---PLDVIAFSAISLGLIY 530 (891)
Q Consensus 506 ~~~L~-d~~-----~---~~e~~~~AaLaLGLi~ 530 (891)
...+. |.. + --+.+++.+.|++..|
T Consensus 426 ~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray 459 (1133)
T KOG1943|consen 426 LKALHYDVRRGQHSVGQHVRDAACYVCWAFARAY 459 (1133)
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhcC
Confidence 44442 321 1 1234556666666655
No 89
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=67.27 E-value=59 Score=33.19 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=62.8
Q ss_pred CchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC---CHHHHHHHHHHhcCCCCchH
Q 002696 441 DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ---NDQIRHKLSTILNDAKSPLD 517 (891)
Q Consensus 441 ~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~---~~~v~e~L~~~L~d~~~~~e 517 (891)
++.+|..++.++|=...-+.+-.||....+...|.++++.+|..|++.|--....-. +..++-.+...+.|+ +.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~--~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE--NPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC--CHH
Confidence 356889999999955555555567888899999999999999999998776443311 334534445566675 456
Q ss_pred HHHHHHHHhhhhhcC
Q 002696 518 VIAFSAISLGLIYVG 532 (891)
Q Consensus 518 ~~~~AaLaLGLi~lG 532 (891)
++..|...+.-+..-
T Consensus 79 Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 79 IRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666777777666544
No 90
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.24 E-value=14 Score=42.00 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=52.3
Q ss_pred HHHHhhcCChhHHhHHHHHhhhhccCCC--------cHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 002696 656 LEHLLQYGEQNIRRAVPLALGLLCISNP--------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 719 (891)
Q Consensus 656 l~~L~~~~np~VR~ga~lALGL~~aGt~--------~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn 719 (891)
+-.++.++|+.+||-++-|++.+..-.. -++++..|-.++.|+++-|+..|-.||+.+.+.|.-
T Consensus 213 LVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 213 LVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred hhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence 3345578999999999999998865432 345677888899999999999999999999998873
No 91
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=67.18 E-value=2.8e+02 Score=33.30 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=54.0
Q ss_pred HHhhcCChhHHhHHHHHhhhhccCCCcHHHH---------HHHHHh---hcCCchHHHHHHHHHHHHHcCCCC---chHH
Q 002696 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVM---------DTLSRL---SHDTDSEVAMAAVISLGLIGSGTN---NARI 722 (891)
Q Consensus 658 ~L~~~~np~VR~ga~lALGL~~aGt~~~~ai---------d~L~~l---~~D~d~~Vr~~AiiALGlV~aGtn---n~rv 722 (891)
.+.++.|+.++-.|.=++|.++..+--..++ ..|..+ .+....++|..++=|++.+..... +.++
T Consensus 297 ~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i 376 (503)
T PF10508_consen 297 SMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDI 376 (503)
T ss_pred HHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 3446788989988888999997544333333 112222 234556788889999999854332 3567
Q ss_pred HHHHHHhhhhhccChhhH
Q 002696 723 AGMLRNLSSYYYKDANLL 740 (891)
Q Consensus 723 ~~~Lr~l~~~~~~d~~~~ 740 (891)
..+.+......+.+|...
T Consensus 377 ~~~~~~w~~~~~~~~~~~ 394 (503)
T PF10508_consen 377 LSITESWYESLSGSPLSN 394 (503)
T ss_pred HHHHHHHHHHhcCCchHH
Confidence 777777766666777653
No 92
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.72 E-value=26 Score=43.33 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=68.1
Q ss_pred cchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcH----HHHHHHHHhhcCCchHHHH
Q 002696 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV----NVMDTLSRLSHDTDSEVAM 704 (891)
Q Consensus 629 ~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~----~aid~L~~l~~D~d~~Vr~ 704 (891)
.+|..|+-.++.+-..+-+ +...+=+.....+.+|.+|+.++++.+-++-=++.. ..++.|..+..|.++.|-.
T Consensus 101 ~iR~lAlrtm~~l~v~~i~--ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVA 178 (734)
T KOG1061|consen 101 LIRALALRTMGCLRVDKIT--EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVA 178 (734)
T ss_pred HHHHHHhhceeeEeehHHH--HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHH
Confidence 6777777777777666542 444444455558889999999999999887555543 3578899999999999999
Q ss_pred HHHHHHHHHcCCCC
Q 002696 705 AAVISLGLIGSGTN 718 (891)
Q Consensus 705 ~AiiALGlV~aGtn 718 (891)
||+-|+.-|...++
T Consensus 179 nAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 179 NALAALSEIHESHP 192 (734)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998875
No 93
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=63.35 E-value=1.1e+02 Score=31.29 Aligned_cols=77 Identities=22% Similarity=0.190 Sum_probs=55.7
Q ss_pred HHHHHHhhcCChhHHhHHHHHhhhhccC-CCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhh
Q 002696 654 RSLEHLLQYGEQNIRRAVPLALGLLCIS-NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSS 731 (891)
Q Consensus 654 ~~l~~L~~~~np~VR~ga~lALGL~~aG-t~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~Lr~l~~ 731 (891)
+.+...+.+.|+.+||.+..++.-.... +--..+++.+..+.+|.+.+|+.+.--+|.-++.. ...++..+++....
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l~~~~~ 185 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFLEKNGL 185 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH
Confidence 6777888899999999988887655444 45566778888999999999998766666655544 33466777766433
No 94
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.84 E-value=4.3e+02 Score=33.52 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=47.6
Q ss_pred hHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhH---HHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-HHHHHH
Q 002696 429 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPA---LALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQIRHK 504 (891)
Q Consensus 429 ~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~---l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~-~~v~e~ 504 (891)
|.+.|.+||-+.+.++|-=||=+|+..-. .+.+.+ ...+.+.|++++..++--|+ =|-.+-....| +.+++.
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~---~d~~avqrHr~tIleCL~DpD~SIkrral-ELs~~lvn~~Nv~~mv~e 389 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQ---QDPTAVQRHRSTILECLKDPDVSIKRRAL-ELSYALVNESNVRVMVKE 389 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhc---CCcHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHhccccHHHHHHH
Confidence 56778899999999999888888886532 121111 13556778888877765432 22233333333 355566
Q ss_pred HHHHhc
Q 002696 505 LSTILN 510 (891)
Q Consensus 505 L~~~L~ 510 (891)
|+..|.
T Consensus 390 Ll~fL~ 395 (866)
T KOG1062|consen 390 LLEFLE 395 (866)
T ss_pred HHHHHH
Confidence 666664
No 95
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=60.95 E-value=1e+02 Score=37.55 Aligned_cols=136 Identities=13% Similarity=0.114 Sum_probs=90.0
Q ss_pred HHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHh
Q 002696 615 NLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 694 (891)
Q Consensus 615 ~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l 694 (891)
.|+....++.. .+||.|+-..|+| ++-+|-+.+..++-.-+...+-+.|-+..+|+|+..--+|-..++-+|..=
T Consensus 734 eLvd~Lks~nK---eiRR~A~~tfG~I--s~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~d 808 (975)
T COG5181 734 ELVDSLKSWNK---EIRRNATETFGCI--SRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSD 808 (975)
T ss_pred HHHHHHHHhhH---HHHHhhhhhhhhH--HhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhc
Confidence 34454455433 6999999999999 466777777776655557778889999999999987667777777766555
Q ss_pred hcCCchHHHHHHHHHHHHHcCCCCchH---HHHHHHHhhhh-hccChh-----hHHHHHHHHhhhhcCCCce
Q 002696 695 SHDTDSEVAMAAVISLGLIGSGTNNAR---IAGMLRNLSSY-YYKDAN-----LLFCVRIAQGLVHMGKGLL 757 (891)
Q Consensus 695 ~~D~d~~Vr~~AiiALGlV~aGtnn~r---v~~~Lr~l~~~-~~~d~~-----~~f~~~iAqGll~~G~G~~ 757 (891)
-..|..+|.++.+=||.+..--++++. |-.+.--|+-. ..+||. .-...++++| |-|.|-.
T Consensus 809 Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln--c~gtg~e 878 (975)
T COG5181 809 YETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN--CPGTGDE 878 (975)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC--CCCcccH
Confidence 566889999999999998765444421 11222222111 134553 2344567777 7777654
No 96
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.93 E-value=45 Score=40.08 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred HhcCCCHHHHHHHHh-----hhhccCCCCccchhHHHHHhHHhhhcchhhH-----HHHHHHHHHHhhcCChhHHhHHHH
Q 002696 604 YAGTGNVLKVQNLLG-----HCAQHHEKGEAYQGPAVLGIAMVAMAEELGL-----EMAIRSLEHLLQYGEQNIRRAVPL 673 (891)
Q Consensus 604 yaGTGn~~~iq~LL~-----~~~~~~~d~~~vrr~avlglglI~~~~~~g~-----e~~~~~l~~L~~~~np~VR~ga~l 673 (891)
|.-.|+...|++++. |+.+... ..|+++.+|+|.++.+--... .+++.++.-+ ++.|..|||-+|-
T Consensus 31 l~~~~~~~~i~k~I~~L~~d~a~s~~~---n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf-~D~d~~vRyyACE 106 (675)
T KOG0212|consen 31 LVNNNDYDQIRKVISELAGDYAYSPHA---NMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCF-SDQDSQVRYYACE 106 (675)
T ss_pred HHccCcHHHHHHHHHHHHHHhccCccc---ccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhc-cCccceeeeHhHH
Q ss_pred Hhhhhc------cCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc-------hHHHHHHHHhhhhhccChhhH
Q 002696 674 ALGLLC------ISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN-------ARIAGMLRNLSSYYYKDANLL 740 (891)
Q Consensus 674 ALGL~~------aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn-------~rv~~~Lr~l~~~~~~d~~~~ 740 (891)
+|=-++ .-..-+++.|.|-+++.|+|..||-+|=+-=.++-.=-.. +.+..+||. ..|..+|++|
T Consensus 107 sLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~e--riy~~n~~tR 184 (675)
T KOG0212|consen 107 SLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRE--RIYVINPMTR 184 (675)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHH--HHhcCCchHH
Q ss_pred HHH
Q 002696 741 FCV 743 (891)
Q Consensus 741 f~~ 743 (891)
..+
T Consensus 185 ~fl 187 (675)
T KOG0212|consen 185 QFL 187 (675)
T ss_pred HHH
No 97
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=60.54 E-value=51 Score=38.99 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhcchhHHHHHHHHHHHh
Q 002696 240 LVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILAR 293 (891)
Q Consensus 240 ~vl~~~~~iy~~~~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~lar 293 (891)
+-|+-+.++....+++--++.|++.+||.+.-.++|.+++ +...|+..||
T Consensus 390 ~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~----~~~~A~~~A~ 439 (443)
T PF04053_consen 390 EKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETG----RLPEAALFAR 439 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcC----CchHHHHHHH
Confidence 3445555666666666666666666666666666666542 2334454444
No 98
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=60.08 E-value=36 Score=35.26 Aligned_cols=76 Identities=20% Similarity=0.202 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHH
Q 002696 651 MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRN 728 (891)
Q Consensus 651 ~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn-~rv~~~Lr~ 728 (891)
...+.+...+++.|+.+||+++.++--....+.-..+.+.+....+|++.+|+.+.--+|.-+ |..+ ..+.++|++
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~--~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREI--GKKDPDEVLEFLQK 196 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHH--CTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHH--HHhCHHHHHHHHHH
Confidence 356667777788999999998877755444444456667778888999999997644444444 4434 466777777
No 99
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.61 E-value=2.4e+02 Score=38.02 Aligned_cols=236 Identities=20% Similarity=0.222 Sum_probs=126.4
Q ss_pred HHhHhhhhcCCCchhH-HHHHHHHHHh-hcCCCCCh----hhHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-c-C-CCHH
Q 002696 430 LAQIDKYFHSTDNHVI-AGALLGVGIV-NCGIRNDC----DPALALLSEYVGREDACIRIGAIMGLGISYA-G-T-QNDQ 500 (891)
Q Consensus 430 l~~l~~yL~s~~~~~k-~GAllaLGli-~~G~~~e~----d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~-G-s-~~~~ 500 (891)
+..|+..+++++++.| +|.+-=|.++ |+|+..+. ..+.....+.|.+.++.+|=-|.-|||++|- | + -.++
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~ 899 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKS 899 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHH
Confidence 4456666777776655 4555555555 66765542 1244555667888899999999999999994 2 2 2457
Q ss_pred HHHHHHHHhcCC-----CCchHHHHHHHHHhhhhh-cCCC-CHHHHHHHHHHHhhcCc-cccCchhH-------------
Q 002696 501 IRHKLSTILNDA-----KSPLDVIAFSAISLGLIY-VGSC-NEEVAQAIIFALMDRSE-SELGEPLT------------- 559 (891)
Q Consensus 501 v~e~L~~~L~d~-----~~~~e~~~~AaLaLGLi~-lGs~-n~~~~e~ll~~L~~~~~-t~l~e~~~------------- 559 (891)
+++.|+..|... .++.|.--+ .=|.+. -++| +-..+.++... +++ .| .+-+.
T Consensus 900 LV~sL~~tl~~Gkr~~~~vs~eTelF---q~G~Lg~Tp~Gg~isTYKELc~L---ASdl~q-PdLVYKFM~LAnh~A~wn 972 (1702)
T KOG0915|consen 900 LVDSLVNTLTGGKRKAIKVSEETELF---QEGTLGKTPDGGKISTYKELCNL---ASDLGQ-PDLVYKFMQLANHNATWN 972 (1702)
T ss_pred HHHHHHHHHhccccccceeccchhcc---cCCcCCCCCCCCcchHHHHHHHH---HhhcCC-hHHHHHHHHHhhhhchhh
Confidence 888888877521 133343222 224322 2333 22344454442 111 11 11122
Q ss_pred --HHHHHHHHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHH
Q 002696 560 --RLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLG 637 (891)
Q Consensus 560 --r~~~lglgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlg 637 (891)
+++|.|+|-+.-..+++.++.+.. .|-+|..|=- |.+. .||+ |..+
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l~k----------------------------LIPrLyRY~y-DP~~--~Vq~-aM~s 1020 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYLKK----------------------------LIPRLYRYQY-DPDK--KVQD-AMTS 1020 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHHHH----------------------------hhHHHhhhcc-CCcH--HHHH-HHHH
Confidence 344444444443333332222221 2334444421 2221 3443 2333
Q ss_pred hHHhhhcchhhHHHHHH----HHHHHh---hcCChhHHhHHHHHhhhhccCCCcHHHHHHHHH-------hhcCCchHHH
Q 002696 638 IAMVAMAEELGLEMAIR----SLEHLL---QYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR-------LSHDTDSEVA 703 (891)
Q Consensus 638 lglI~~~~~~g~e~~~~----~l~~L~---~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~-------l~~D~d~~Vr 703 (891)
|==....++ +.++.+ |++.|+ .+...-||-+.|+||.=+--|-++.++.|.|-+ .+.|--+.||
T Consensus 1021 IW~~Li~D~--k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR 1098 (1702)
T KOG0915|consen 1021 IWNALITDS--KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVR 1098 (1702)
T ss_pred HHHHhccCh--HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222333 244444 333332 455678999999999999999999888876543 3566667787
Q ss_pred HHH
Q 002696 704 MAA 706 (891)
Q Consensus 704 ~~A 706 (891)
-+|
T Consensus 1099 ~aa 1101 (1702)
T KOG0915|consen 1099 EAA 1101 (1702)
T ss_pred HHH
Confidence 654
No 100
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.91 E-value=2.5e+02 Score=35.76 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=96.9
Q ss_pred hhhcCCCchhHHHHHHHHHHhhcCCCC----ChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHH-h
Q 002696 435 KYFHSTDNHVIAGALLGVGIVNCGIRN----DCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTI-L 509 (891)
Q Consensus 435 ~yL~s~~~~~k~GAllaLGli~~G~~~----e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~~-L 509 (891)
.+++++...+|++|+.-+--.--.+.. ..+.+++...++|.+.++++-..|+-|+-... ---++++.+.|... .
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lc-evy~e~il~dL~e~Y~ 812 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLC-EVYPEDILPDLSEEYL 812 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHH-HhcchhhHHHHHHHHH
Confidence 445678899999999877644332211 11246778889999998888777777665432 12567788777763 3
Q ss_pred cCCCC--------chHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHH-HHhh--hc---CCh-
Q 002696 510 NDAKS--------PLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLG-LGLL--YL---GKQ- 574 (891)
Q Consensus 510 ~d~~~--------~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lg-lgLl--~l---G~~- 574 (891)
+..+. -+|+..--+.++|=++.+-- +.++++.+..... .+..-|.-++| +|.+ .. +..
T Consensus 813 s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-----~~Li~tfl~gvre--pd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 813 SEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-----AVLINTFLSGVRE--PDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred hcccCCCccceehHHHHHHHHHHHhccHHHHHH-----HHHHHHHHHhcCC--chHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 21111 14554445556665554322 3556665543221 12333443332 2322 22 222
Q ss_pred --hhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCC
Q 002696 575 --ESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGN 609 (891)
Q Consensus 575 --e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn 609 (891)
|....++.....+..+..|.+++.++..-.-|||.
T Consensus 886 ~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 886 FHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence 23334455555667788899999999999999995
No 101
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.39 E-value=70 Score=39.55 Aligned_cols=48 Identities=31% Similarity=0.338 Sum_probs=38.0
Q ss_pred hcCChhHHhHHHHHhhhhc--cCCCcHHHHHHHHHh-hcCCchHHHHHHHH
Q 002696 661 QYGEQNIRRAVPLALGLLC--ISNPKVNVMDTLSRL-SHDTDSEVAMAAVI 708 (891)
Q Consensus 661 ~~~np~VR~ga~lALGL~~--aGt~~~~aid~L~~l-~~D~d~~Vr~~Aii 708 (891)
-+..|.||.-|-+||.-.- .++++.+|..+|.-+ -+||++.||+.|+.
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred hccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4567999999999998664 566777888887766 58999999986543
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.67 E-value=55 Score=41.95 Aligned_cols=139 Identities=19% Similarity=0.322 Sum_probs=87.5
Q ss_pred CCCCCCcc------cHHHHHHHHHHHHHHHHhccCCCC------------H-HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 002696 142 EGDIGSWG------HEYVRNLAGEIAQEYAKRQTDEAS------------I-DDLMELVQEIVAFHMKHNAEPEAVDLLM 202 (891)
Q Consensus 142 ~~d~~~wg------hEYvr~l~~ei~~~y~~~~~~~~~------------~-~~L~~lv~~iv~~~l~~n~e~eAvdlal 202 (891)
.-|..-|+ +.|-|.|+-..++.-.......++ . .+|.+|.++||--.-..++-..-=.++
T Consensus 949 R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLL- 1027 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLL- 1027 (1666)
T ss_pred ccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhH-
Confidence 34666664 678898888877654322211111 1 256666666653221111111100111
Q ss_pred hcCChhhhHHHhhccChHHHHHHHHhhcccCCCCCh-----HHHHHHHHHHHHccCCHHHHHHHHHh-CCChHHHHHHHH
Q 002696 203 EVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDD-----MLVLDIAYMIYLKFEEFPNALQIALF-LDNMQYVKQIFT 276 (891)
Q Consensus 203 E~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~-----~~vl~~~~~iy~~~~~~~~al~~al~-l~d~~~i~~i~~ 276 (891)
.+ ..+ +.+-.||..|+-..-+|-.+.-. .++++-++.||.|++.+.+|+++.|+ .++.|...+.-+
T Consensus 1028 ------iL-tAi-kad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe 1099 (1666)
T KOG0985|consen 1028 ------IL-TAI-KADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAE 1099 (1666)
T ss_pred ------HH-HHh-hcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHH
Confidence 11 111 13457888898888877544322 26889999999999999999999987 688898889888
Q ss_pred hcchhHHHHHHHH
Q 002696 277 SCDDLLRKKQFCY 289 (891)
Q Consensus 277 ~~~d~~~~~Qlaf 289 (891)
+|+.|.+--|+|=
T Consensus 1100 ~~n~p~vWsqlak 1112 (1666)
T KOG0985|consen 1100 RCNEPAVWSQLAK 1112 (1666)
T ss_pred hhCChHHHHHHHH
Confidence 9999888888773
No 103
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=53.41 E-value=40 Score=31.30 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=47.9
Q ss_pred HHhHHHHHhhhhccCCCcH------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCch---HHHHHHHHhhhhh-ccC
Q 002696 667 IRRAVPLALGLLCISNPKV------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNA---RIAGMLRNLSSYY-YKD 736 (891)
Q Consensus 667 VR~ga~lALGL~~aGt~~~------~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~---rv~~~Lr~l~~~~-~~d 736 (891)
-|+|+-++|+-++.|-++. ++++-+.....|+|.-||..|+-||.-|.--..+. ...++...|.+.. --|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5888888888777666654 22333344578999999999999999886444331 1122222222221 235
Q ss_pred hhhHHHHHH
Q 002696 737 ANLLFCVRI 745 (891)
Q Consensus 737 ~~~~f~~~i 745 (891)
+.++-|+.+
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 567777654
No 104
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=53.05 E-value=7e+02 Score=33.28 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=31.4
Q ss_pred HHHHHHHc-cCCHHHHHHHHHhCCChHHHHHHHHhcchhHHHHHHHHHHHh
Q 002696 244 IAYMIYLK-FEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILAR 293 (891)
Q Consensus 244 ~~~~iy~~-~~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~lar 293 (891)
++.++|.. ..=|.-.=-++-+-++.+..+.++++.+|+.++.-+.-++-|
T Consensus 227 ViaELf~Eg~PlF~LSQL~aYr~~~~~~~e~~Le~Ied~~~Rnlil~Mi~r 277 (1431)
T KOG1240|consen 227 VIAELFLEGRPLFTLSQLLAYRSGNADDPEQLLEKIEDVSLRNLILSMIQR 277 (1431)
T ss_pred HHHHHHhcCCCcccHHHHHhHhccCccCHHHHHHhCcCccHHHHHHHHHcc
Confidence 34444444 222333334566777777888999999888777766665543
No 105
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.43 E-value=4.9e+02 Score=32.70 Aligned_cols=200 Identities=19% Similarity=0.221 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHH-------------HHHHHhcCCC--
Q 002696 43 ALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGT-------------LKAYYETMPD-- 107 (891)
Q Consensus 43 ~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~-------------l~~~ye~~~~-- 107 (891)
+|+--..-++++|+++||+++..|..-..++-|.. ||+.-.|+|-+-+ |..+|-..+.
T Consensus 178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKn-------PknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE 250 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN-------PQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE 250 (877)
T ss_pred hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC-------CcccccccHHHHHHHhccCCCeehHHHHHHHhhccccC
Confidence 45666777889999999999999999999999988 8888888886544 3444544332
Q ss_pred Cch-HH----HHHHHHHHHhhhccCcccccchhhhhcCCCCCCCCc--ccHHHHHHHHHHHHHHHHhccC-CCCH-----
Q 002696 108 SDL-KK----YMADILSVLALTMSAEGERESLKYRLLGSEGDIGSW--GHEYVRNLAGEIAQEYAKRQTD-EASI----- 174 (891)
Q Consensus 108 ~~~-k~----~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~w--ghEYvr~l~~ei~~~y~~~~~~-~~~~----- 174 (891)
|.. |+ +.-.|=|-+||.. ..||++=-..+ ++.+= .|+= .+.=|++.-....+. +++.
T Consensus 251 PRLgKKLieplt~li~sT~AmSL----lYECvNTVVa~---s~s~g~~d~~a---siqLCvqKLr~fiedsDqNLKYlgL 320 (877)
T KOG1059|consen 251 PRLGKKLIEPITELMESTVAMSL----LYECVNTVVAV---SMSSGMSDHSA---SIQLCVQKLRIFIEDSDQNLKYLGL 320 (877)
T ss_pred chhhhhhhhHHHHHHHhhHHHHH----HHHHHHHheee---hhccCCCCcHH---HHHHHHHHHhhhhhcCCccHHHHHH
Confidence 211 22 2223345555421 13566554444 22221 1322 222233333333222 1111
Q ss_pred ----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccChHHHHHHHHhhcccCCCCCh--HHHH
Q 002696 175 ----------DDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDD--MLVL 242 (891)
Q Consensus 175 ----------~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~--~~vl 242 (891)
++...=-..++=.||.+.++ -+..+-||.+...|++.|-..+..-+..-+- ..++.+ .+++
T Consensus 321 lam~KI~ktHp~~Vqa~kdlIlrcL~DkD~------SIRlrALdLl~gmVskkNl~eIVk~LM~~~~-~ae~t~yrdell 393 (877)
T KOG1059|consen 321 LAMSKILKTHPKAVQAHKDLILRCLDDKDE------SIRLRALDLLYGMVSKKNLMEIVKTLMKHVE-KAEGTNYRDELL 393 (877)
T ss_pred HHHHHHhhhCHHHHHHhHHHHHHHhccCCc------hhHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-hccchhHHHHHH
Confidence 34444455677788866654 3455677777777877776555543322221 112222 2577
Q ss_pred HHHHHHHHccC-----CHHHHHHHHHhCC
Q 002696 243 DIAYMIYLKFE-----EFPNALQIALFLD 266 (891)
Q Consensus 243 ~~~~~iy~~~~-----~~~~al~~al~l~ 266 (891)
-.+..||.+.+ +|--++.+.++|-
T Consensus 394 ~~II~iCS~snY~~ItdFEWYlsVlveLa 422 (877)
T KOG1059|consen 394 TRIISICSQSNYQYITDFEWYLSVLVELA 422 (877)
T ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 77778877643 4555666655543
No 106
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.86 E-value=20 Score=43.68 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=57.0
Q ss_pred hh-hHHHHHHHhcccccccch---hhHHhHhhhh----cCCCchhHHHHHHHHHHhhcCCCCCh-----hhHHHHHHhhc
Q 002696 408 EH-GKMSAAASLGMILLWDVD---SGLAQIDKYF----HSTDNHVIAGALLGVGIVNCGIRNDC-----DPALALLSEYV 474 (891)
Q Consensus 408 ~~-~k~sA~aslGlI~~~~~~---~~l~~l~~yL----~s~~~~~k~GAllaLGli~~G~~~e~-----d~~l~lL~~~L 474 (891)
+| .|=++..++|.|--|-.+ +.+..|-+|| .+..+-+|.-.+-.|+-...-+..+. .|++.-|..-+
T Consensus 406 ~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l 485 (885)
T KOG2023|consen 406 EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL 485 (885)
T ss_pred hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH
Confidence 36 466778888888755322 2343444443 35667788878777877655443321 13333333334
Q ss_pred CCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHh
Q 002696 475 GREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL 509 (891)
Q Consensus 475 ~~~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~~L 509 (891)
-+++..++-+||.+.... .|+.-+.|.|.+
T Consensus 486 lD~NK~VQEAAcsAfAtl-----eE~A~~eLVp~l 515 (885)
T KOG2023|consen 486 LDSNKKVQEAACSAFATL-----EEEAGEELVPYL 515 (885)
T ss_pred hcccHHHHHHHHHHHHHH-----HHhccchhHHHH
Confidence 467888999999987764 334444455544
No 107
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=51.43 E-value=69 Score=41.77 Aligned_cols=133 Identities=18% Similarity=0.211 Sum_probs=83.0
Q ss_pred HhhhhcCCCchhHHHHHHHHHHhhc--CCCCChhhHHHHHHhhcCCCCHHHHHH---HHHHHHHHhccCC--CHHHHHHH
Q 002696 433 IDKYFHSTDNHVIAGALLGVGIVNC--GIRNDCDPALALLSEYVGREDACIRIG---AIMGLGISYAGTQ--NDQIRHKL 505 (891)
Q Consensus 433 l~~yL~s~~~~~k~GAllaLGli~~--G~~~e~d~~l~lL~~~L~~~~~~v~~g---A~lGLGlay~Gs~--~~~v~e~L 505 (891)
...+|..+++++|-..+-+++-... |.....|-++..|.-||++++...|.+ .+-|+. +|+|.. .+-++-+|
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvs-i~VG~rs~seyllPLl 661 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVS-IFVGWRSVSEYLLPLL 661 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceE-EEEeeeeHHHHHHHHH
Confidence 3455667778999988888776654 555556779999999999998888875 455554 478876 44444555
Q ss_pred HHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhh--cCccccCchhHHHHHHHHHhhhc
Q 002696 506 STILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMD--RSESELGEPLTRLIPLGLGLLYL 571 (891)
Q Consensus 506 ~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~--~~~t~l~e~~~r~~~lglgLl~l 571 (891)
.+-|.|..-.+-+....++. +|+-+|--...++-+|++...- .++ .-|+|-+++++-..-.
T Consensus 662 ~Q~ltD~EE~Viv~aL~~ls-~Lik~~ll~K~~v~~i~~~v~PlL~hP----N~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 662 QQGLTDGEEAVIVSALGSLS-ILIKLGLLRKPAVKDILQDVLPLLCHP----NLWIRRAVLGIIAAIA 724 (1431)
T ss_pred HHhccCcchhhHHHHHHHHH-HHHHhcccchHHHHHHHHhhhhheeCc----hHHHHHHHHHHHHHHH
Confidence 55556754333333333443 5555555555566666654321 233 3589988876544433
No 108
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=51.34 E-value=2.4e+02 Score=32.83 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=65.1
Q ss_pred cchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCc------HHHHHHHH----------
Q 002696 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK------VNVMDTLS---------- 692 (891)
Q Consensus 629 ~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~------~~aid~L~---------- 692 (891)
.++..+-++-|+|+=++|.+.+...++++.|.+ +.+...++-+++++..-.+. ...+..|.
T Consensus 250 ~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 250 ALEILIWITKALVMRGHPLATELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 345567788999999999888888888887754 77999999999998766222 12333332
Q ss_pred ---HhhcCCchHHHHHHHHHHHHHcCCCCch
Q 002696 693 ---RLSHDTDSEVAMAAVISLGLIGSGTNNA 720 (891)
Q Consensus 693 ---~l~~D~d~~Vr~~AiiALGlV~aGtnn~ 720 (891)
...+..++..+.+-+.|++.+.-..+..
T Consensus 327 ~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~ 357 (415)
T PF12460_consen 327 KLLEGFKEADDEIKSNYLTALSHLLKNVPKS 357 (415)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhhCCHH
Confidence 2235566668899999999999988853
No 109
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=49.79 E-value=5.9e+02 Score=31.51 Aligned_cols=269 Identities=19% Similarity=0.224 Sum_probs=129.4
Q ss_pred HHHhcccccccchhhHHhHhhhhcCCCchhHHHHHHHHHHh-----hcCCCCChhhHHHH----HHhhcCCCCHHHHHHH
Q 002696 415 AASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIV-----NCGIRNDCDPALAL----LSEYVGREDACIRIGA 485 (891)
Q Consensus 415 ~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli-----~~G~~~e~d~~l~l----L~~~L~~~~~~v~~gA 485 (891)
+.|++.....+...-...+-+.|.+..+.+|.-|+=-.|.+ .||-. ..++. |-++|....+-+ .|.
T Consensus 591 ~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~----~~l~klg~iLyE~lge~ypEv-Lgs 665 (975)
T COG5181 591 LVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET----KELAKLGNILYENLGEDYPEV-LGS 665 (975)
T ss_pred eeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH----HHHHHHhHHHHHhcCcccHHH-HHH
Confidence 45666666666666566666777777777776654443433 33321 13333 334454333222 233
Q ss_pred HHH-HHHHhc----cCC---CHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCC----HH---HHHHHHHHHhhcC
Q 002696 486 IMG-LGISYA----GTQ---NDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN----EE---VAQAIIFALMDRS 550 (891)
Q Consensus 486 ~lG-LGlay~----Gs~---~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n----~~---~~e~ll~~L~~~~ 550 (891)
+++ +-.+|- .+. -.+++-.|.|+|.+.....++...+ -+|.|.+-+.. .| +.=.++..|...
T Consensus 666 il~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~--lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~- 742 (975)
T COG5181 666 ILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIA--LVGTICMNSPEYIGVREWMRICFELVDSLKSW- 742 (975)
T ss_pred HHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHH--HHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh-
Confidence 332 111111 111 1356777888886432223322112 23555443321 11 122333333221
Q ss_pred ccccCchhHHHHHHHHHhhh--cCChhhHHHHHHHHhhchhhhhhhhhHHHHHHH--HhcCCCHHHHHHHHhhhhccCCC
Q 002696 551 ESELGEPLTRLIPLGLGLLY--LGKQESVEATAEVSKTFNEKIRKYCDMTLLSCA--YAGTGNVLKVQNLLGHCAQHHEK 626 (891)
Q Consensus 551 ~t~l~e~~~r~~~lglgLl~--lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glA--yaGTGn~~~iq~LL~~~~~~~~d 626 (891)
+..+.|.+.-.+|++- .|-+|..+.+++-|+. ++.-.|-+...+++.. |||-=+ ++-.|+.-. ++.+
T Consensus 743 ----nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkv-qeRq~RvctsvaI~iVae~cgpfs--VlP~lm~dY-~TPe- 813 (975)
T COG5181 743 ----NKEIRRNATETFGCISRAIGPQDVLDILLNNLKV-QERQQRVCTSVAISIVAEYCGPFS--VLPTLMSDY-ETPE- 813 (975)
T ss_pred ----hHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchH-HHHHhhhhhhhhhhhhHhhcCchh--hHHHHHhcc-cCch-
Confidence 3457777776677664 4777877788777765 3445555555544443 444433 333344322 1222
Q ss_pred CccchhHHHHHhHHhhhcchhhHHHHHH-------HHHHHhhcCChhHHhHHH---HHhhhhccCCCcHHHHHH----HH
Q 002696 627 GEAYQGPAVLGIAMVAMAEELGLEMAIR-------SLEHLLQYGEQNIRRAVP---LALGLLCISNPKVNVMDT----LS 692 (891)
Q Consensus 627 ~~~vrr~avlglglI~~~~~~g~e~~~~-------~l~~L~~~~np~VR~ga~---lALGL~~aGt~~~~aid~----L~ 692 (891)
.+||....=+++|.. +-+| +++.+ +++--+.+-||.-|..++ --|.|-|.||+..++.=- |.
T Consensus 814 -~nVQnGvLkam~fmF--eyig-~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllw 889 (975)
T COG5181 814 -ANVQNGVLKAMCFMF--EYIG-QASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLW 889 (975)
T ss_pred -hHHHHhHHHHHHHHH--HHHH-HHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhh
Confidence 267777777777654 2333 33332 222223455665555432 223333777777766432 23
Q ss_pred HhhcCCchHHHH
Q 002696 693 RLSHDTDSEVAM 704 (891)
Q Consensus 693 ~l~~D~d~~Vr~ 704 (891)
+-.-|+.+.|-+
T Consensus 890 pNIle~sPhvi~ 901 (975)
T COG5181 890 PNILEPSPHVIQ 901 (975)
T ss_pred hhccCCCcHHHH
Confidence 334455555543
No 110
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=46.70 E-value=36 Score=41.71 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=63.9
Q ss_pred ccchhHHHHHhHHhhhc-chhhHHHHHHHHHHHhhcCChhHHhHHHHHhhh--hccCCCcHHHHHHHHHhhcCCchHHHH
Q 002696 628 EAYQGPAVLGIAMVAMA-EELGLEMAIRSLEHLLQYGEQNIRRAVPLALGL--LCISNPKVNVMDTLSRLSHDTDSEVAM 704 (891)
Q Consensus 628 ~~vrr~avlglglI~~~-~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL--~~aGt~~~~aid~L~~l~~D~d~~Vr~ 704 (891)
+..+++|-+++--+++= .+...+-.|-++.-+....+|.||..+-++||= +|--|--.+.-+.|.+-.+|.+.+||+
T Consensus 910 ~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V~r 989 (1128)
T COG5098 910 EELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRR 989 (1128)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHHHH
Confidence 46788998887765543 333334444445555557899999999999983 444444456667888889999999999
Q ss_pred HHHHHHHH-HcCCC
Q 002696 705 AAVISLGL-IGSGT 717 (891)
Q Consensus 705 ~AiiALGl-V~aGt 717 (891)
+++.-+.+ |++|+
T Consensus 990 tclmti~fLilagq 1003 (1128)
T COG5098 990 TCLMTIHFLILAGQ 1003 (1128)
T ss_pred HHHHHHHHHHHccc
Confidence 99988875 45665
No 111
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=46.55 E-value=2.3e+02 Score=36.79 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhcCChhh--------------hHHHhhc-cChHHHHHHHHhhc
Q 002696 178 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDL--------------LVEHVDA-TNFKRTCLYLTSAA 230 (891)
Q Consensus 178 ~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~--------------i~~~vd~-~~~~rv~~Yl~~~~ 230 (891)
..||...+..++..++|.+|..++ +..|+|+ ++.+|++ .+-.-+++++.++.
T Consensus 694 R~LVL~~ir~~Ld~~~Y~~Af~~~-RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~ 760 (928)
T PF04762_consen 694 RALVLAGIRKLLDAKDYKEAFELC-RKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLR 760 (928)
T ss_pred HhHHHHHHHHHHhhccHHHHHHHH-HHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 478999999999999999999764 4455543 4455555 34456666665444
No 112
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=46.20 E-value=96 Score=33.55 Aligned_cols=137 Identities=13% Similarity=0.127 Sum_probs=59.3
Q ss_pred CChhhHHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHH
Q 002696 572 GKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM 651 (891)
Q Consensus 572 G~~e~~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~ 651 (891)
|.-+.+..+++.+......-......+..|-.|...|+.....+.+.-+.....+ +..-..-++-.+|-.|+. +.
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~--~~~~~~~l~~~li~~~~~---~~ 198 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD--DPDARNALAWLLIDMGDY---DE 198 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHCTTCHH---HH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCh---HH
Confidence 4455555666655432211122233445566666777765555554444432222 112122233334444554 44
Q ss_pred HHHHHHHHhhc--CChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCc
Q 002696 652 AIRSLEHLLQY--GEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNN 719 (891)
Q Consensus 652 ~~~~l~~L~~~--~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~-D~d~~Vr~~AiiALGlV~aGtnn 719 (891)
+..++..+... .||.+.. ++|.+....|. ..+++..+.+... +|++... ...+|-++...+.
T Consensus 199 ~~~~l~~~~~~~~~~~~~~~--~la~~~~~lg~-~~~Al~~~~~~~~~~p~d~~~---~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 199 AREALKRLLKAAPDDPDLWD--ALAAAYLQLGR-YEEALEYLEKALKLNPDDPLW---LLAYADALEQAGR 263 (280)
T ss_dssp HHHHHHHHHHH-HTSCCHCH--HHHHHHHHHT--HHHHHHHHHHHHHHSTT-HHH---HHHHHHHHT----
T ss_pred HHHHHHHHHHHCcCHHHHHH--HHHHHhccccc-ccccccccccccccccccccc---ccccccccccccc
Confidence 55566555443 2444433 44444444454 3467777766654 5544322 2445555544443
No 113
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=44.15 E-value=1.7e+02 Score=34.59 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCCHHHHH----------HHHHhcCChhhhHHHhhccChHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002696 180 LVQEIVAFHMKHNAEPEAV----------DLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIY 249 (891)
Q Consensus 180 lv~~iv~~~l~~n~e~eAv----------dlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy 249 (891)
.-.++..|.-++|-...|+ +|||+.++++.=.++..+.+......-|-..+.-. -=++++-+-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~------g~~~lAe~c~ 370 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQ------GNIELAEECY 370 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHT------TBHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHc------CCHHHHHHHH
Confidence 3567788888888888887 67888888886665554443333222222222110 0124455556
Q ss_pred HccCCHHHHHHHHHhCCChHHHHHHHHhc---chhHHHHHHHHHHH
Q 002696 250 LKFEEFPNALQIALFLDNMQYVKQIFTSC---DDLLRKKQFCYILA 292 (891)
Q Consensus 250 ~~~~~~~~al~~al~l~d~~~i~~i~~~~---~d~~~~~Qlaf~la 292 (891)
.+.++|...+-+..-.||.+.++++.+.+ .+...+.|.+|.+.
T Consensus 371 ~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lg 416 (443)
T PF04053_consen 371 QKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLG 416 (443)
T ss_dssp HHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT
T ss_pred HhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcC
Confidence 66667777777777777777777777665 35566666666554
No 114
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=42.90 E-value=5.4e+02 Score=29.08 Aligned_cols=95 Identities=21% Similarity=0.286 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHH------------------HhcCChhhhHHHhhc----cChHHHHHHHHhhc------cc
Q 002696 181 VQEIVAFHMKHNAEPEAVDLL------------------MEVEDLDLLVEHVDA----TNFKRTCLYLTSAA------KY 232 (891)
Q Consensus 181 v~~iv~~~l~~n~e~eAvdla------------------lE~~~ld~i~~~vd~----~~~~rv~~Yl~~~~------~~ 232 (891)
|...+..|+.+|....|-.+. .+.++.|.|+++-.+ ..|.-....+...- .|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~y 259 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKY 259 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHH
Confidence 456677888888888887665 445566666665432 22322222222111 11
Q ss_pred CCCCChHHHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhcc
Q 002696 233 LPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCD 279 (891)
Q Consensus 233 ~~~p~~~~vl~~~~~iy~~~~~~~~al~~al~l~d~~~i~~i~~~~~ 279 (891)
.+.- .- +--++.|.+.++|.+|...|.+..|.+.+.++.+.|.
T Consensus 260 I~k~---~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 260 IPKI---PD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCP 302 (319)
T ss_pred HHhC---Ch-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 1000 01 4456788899999999999999999999999999883
No 115
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=42.25 E-value=1.4e+02 Score=29.91 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=48.4
Q ss_pred HHHHHHhcCCCHHHHHHHHH-hcCChhhhHHHhhc----------------cChHHHHHHHHhhcccCCCCChH----HH
Q 002696 183 EIVAFHMKHNAEPEAVDLLM-EVEDLDLLVEHVDA----------------TNFKRTCLYLTSAAKYLPGPDDM----LV 241 (891)
Q Consensus 183 ~iv~~~l~~n~e~eAvdlal-E~~~ld~i~~~vd~----------------~~~~rv~~Yl~~~~~~~~~p~~~----~v 241 (891)
+-++.++++-+|.+|+|.++ ...+-+.+...+.+ ..-..++.|+ +++..+|+-+ .+
T Consensus 23 ~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL~~R~~L~~AL~~Rde~~L~piL~Fl---~k~i~~pr~~~~l~~v 99 (148)
T PF09384_consen 23 SKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLEELIRRGALRAALAGRDEESLEPILKFL---IKNITDPRYTRILVDV 99 (148)
T ss_pred hHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHHHHccHHHHHHHhCCHHHHHHHHHHH---HHhCCCcccHHHHHHH
Confidence 45788899999999999999 55565555544422 1222333333 3555667664 45
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhc
Q 002696 242 LDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSC 278 (891)
Q Consensus 242 l~~~~~iy~~~~~~~~al~~al~l~d~~~i~~i~~~~ 278 (891)
..+++++|... +++...+.+.|..+
T Consensus 100 ~~~ildiY~~~------------~~~s~~v~~~~~~L 124 (148)
T PF09384_consen 100 ANIILDIYSPV------------IGQSPEVDKLFQKL 124 (148)
T ss_pred HHHHHHHHHHH------------hcccHHHHHHHHHH
Confidence 56666766531 34444555666554
No 116
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.66 E-value=1.5e+02 Score=35.93 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=55.0
Q ss_pred HHHHHhcCCCHHHHHHHHHhcC----------ChhhhHHHhhccC-hHHHHHHHHhhc-ccCCC--C--Ch---------
Q 002696 184 IVAFHMKHNAEPEAVDLLMEVE----------DLDLLVEHVDATN-FKRTCLYLTSAA-KYLPG--P--DD--------- 238 (891)
Q Consensus 184 iv~~~l~~n~e~eAvdlalE~~----------~ld~i~~~vd~~~-~~rv~~Yl~~~~-~~~~~--p--~~--------- 238 (891)
++..++++++..+|+.++...+ .+-.|-+++-+-. -..-..++.++- .++.+ | +.
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~V 493 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDPV 493 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH
Confidence 3447889999999999999865 2233333322210 112222222222 22212 1 11
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHh
Q 002696 239 MLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTS 277 (891)
Q Consensus 239 ~~vl~~~~~iy~~~~~~~~al~~al~l~d~~~i~~i~~~ 277 (891)
....+..+.-.++.++|-.|+..|+++++.|+.-++...
T Consensus 494 ~~~aRRfFhhLLR~~rfekAFlLAvdi~~~DLFmdlh~~ 532 (545)
T PF11768_consen 494 SDLARRFFHHLLRYQRFEKAFLLAVDIGDRDLFMDLHYL 532 (545)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccchHHHHHHHHH
Confidence 023344444445678899999999999999998888764
No 117
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=41.63 E-value=6e+02 Score=29.18 Aligned_cols=195 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhh
Q 002696 497 QNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES 576 (891)
Q Consensus 497 ~~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~ 576 (891)
+....++.+..++..+..+.| +=|+||-+|=..|..+-+=.|-|.|+++.+...+.+..-...+|--.+-.|=-|.
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e----~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFE----AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred CcchHHHHHHHHHhcCchhhH----HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Q ss_pred HHHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHH
Q 002696 577 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 656 (891)
Q Consensus 577 ~~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l 656 (891)
++.+...|... |-=-..+.|.||.+...+.+ .+.+.=.+..++-.+..
T Consensus 126 AE~~f~~L~de------------------~efa~~AlqqLl~IYQ~tre----W~KAId~A~~L~k~~~q---------- 173 (389)
T COG2956 126 AEDIFNQLVDE------------------GEFAEGALQQLLNIYQATRE----WEKAIDVAERLVKLGGQ---------- 173 (389)
T ss_pred HHHHHHHHhcc------------------hhhhHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHcCCc----------
Q ss_pred HHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHHhhhhhcc
Q 002696 657 EHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRNLSSYYYK 735 (891)
Q Consensus 657 ~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn-~rv~~~Lr~l~~~~~~ 735 (891)
.+.=..--.-.-+|.... +++...+++..|.+...-.-.-|| |-|-+|=|.++.++ ++...-++.... .
T Consensus 174 ----~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvR--Asi~lG~v~~~~g~y~~AV~~~e~v~e---Q 243 (389)
T COG2956 174 ----TYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVR--ASIILGRVELAKGDYQKAVEALERVLE---Q 243 (389)
T ss_pred ----cchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCcccee--hhhhhhHHHHhccchHHHHHHHHHHHH---h
Q ss_pred Ch
Q 002696 736 DA 737 (891)
Q Consensus 736 d~ 737 (891)
||
T Consensus 244 n~ 245 (389)
T COG2956 244 NP 245 (389)
T ss_pred Ch
No 118
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=41.56 E-value=1.7e+02 Score=26.97 Aligned_cols=81 Identities=20% Similarity=0.144 Sum_probs=53.5
Q ss_pred HHhHhhhhcCCCchhHHHHHHHHHHh-hcCC-C-CChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHH
Q 002696 430 LAQIDKYFHSTDNHVIAGALLGVGIV-NCGI-R-NDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLS 506 (891)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli-~~G~-~-~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~ 506 (891)
+...-.++.++...+|+.++.-|.-. .... . ...+.++.++...|.++++++=..|+=||....- ...++++..|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~-~~p~~vl~~L~ 83 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD-RHPDEVLPILL 83 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH-HChHHHHHHHH
Confidence 44455667788889999998887643 3333 1 1123577788888999998888888888776422 22345777776
Q ss_pred HHhcC
Q 002696 507 TILND 511 (891)
Q Consensus 507 ~~L~d 511 (891)
....|
T Consensus 84 ~~y~~ 88 (92)
T PF10363_consen 84 DEYAD 88 (92)
T ss_pred HHHhC
Confidence 65543
No 119
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=40.57 E-value=1.4e+02 Score=27.59 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 002696 685 VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRN 728 (891)
Q Consensus 685 ~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~Lr~ 728 (891)
..+++++....+|+|++|=.+||=+++-+.-..++.-+..++++
T Consensus 42 ~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~~ 85 (92)
T PF10363_consen 42 PKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLDE 85 (92)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 46677778889999999999999888877655555444444444
No 120
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=40.54 E-value=9.2e+02 Score=31.05 Aligned_cols=223 Identities=16% Similarity=0.188 Sum_probs=121.1
Q ss_pred cccCCCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCCc---
Q 002696 33 KDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSD--- 109 (891)
Q Consensus 33 ~~~~lseed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~--- 109 (891)
.+..|+.|=++|=.+-..+..| .+ ..-|.+.+.++||... -.|-| |.+|-.+||.-.+-+
T Consensus 131 ~~~~l~~~l~~ll~eAN~lfar--g~----~eeA~~i~~EvIkqdp----~~~~a-------y~tL~~IyEqrGd~eK~l 193 (895)
T KOG2076|consen 131 GKSKLAPELRQLLGEANNLFAR--GD----LEEAEEILMEVIKQDP----RNPIA-------YYTLGEIYEQRGDIEKAL 193 (895)
T ss_pred cccccCHHHHHHHHHHHHHHHh--CC----HHHHHHHHHHHHHhCc----cchhh-------HHHHHHHHHHcccHHHHH
Confidence 3578898888888888877777 22 2578999999999883 22333 445556666543221
Q ss_pred ---------------hHHHHHHHHHHHhhhccCcccccchhhhhcCCCCCCCCcccHHHHHHHHH-------HHHHHHHh
Q 002696 110 ---------------LKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGE-------IAQEYAKR 167 (891)
Q Consensus 110 ---------------~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wghEYvr~l~~e-------i~~~y~~~ 167 (891)
.=..+||..-.+. -.+.+--|--.+-.-++..|-.-|=|.-.-+ ..+.|.+.
T Consensus 194 ~~~llAAHL~p~d~e~W~~ladls~~~~------~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 194 NFWLLAAHLNPKDYELWKRLADLSEQLG------NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcc------cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 1122222222221 1222322322222345666722222222211 22333333
Q ss_pred ccC--CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhc----------CChhhhHHH-hhccChHHHHHHHHhhcccCC
Q 002696 168 QTD--EASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEV----------EDLDLLVEH-VDATNFKRTCLYLTSAAKYLP 234 (891)
Q Consensus 168 ~~~--~~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~----------~~ld~i~~~-vd~~~~~rv~~Yl~~~~~~~~ 234 (891)
-+- ..+.++..+++..++.|+.+||+..-|+..+-.. ++++.+... +..+.+.+...++...++...
T Consensus 268 ~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~ 347 (895)
T KOG2076|consen 268 LQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRES 347 (895)
T ss_pred HhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence 222 2346789999999999999999987777665442 233433332 334567777778887777555
Q ss_pred CCChHHH--H-------HHHHHHHHccC---CHHHHHHHHHhCCChHHHHHHHHhc
Q 002696 235 GPDDMLV--L-------DIAYMIYLKFE---EFPNALQIALFLDNMQYVKQIFTSC 278 (891)
Q Consensus 235 ~p~~~~v--l-------~~~~~iy~~~~---~~~~al~~al~l~d~~~i~~i~~~~ 278 (891)
++++.+. - ..+..+=...+ ..+..+.|.++++..+..+-++..+
T Consensus 348 e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l 403 (895)
T KOG2076|consen 348 EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFL 403 (895)
T ss_pred CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHH
Confidence 5554321 0 00000000000 2346678888888888888777764
No 121
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=40.14 E-value=1.1e+02 Score=38.74 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHH----HHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHH
Q 002696 650 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVN----VMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGM 725 (891)
Q Consensus 650 e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~----aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~ 725 (891)
+.+++.+....+. +-..|.....++..+--==|+.- ....+..+++|++..||.|+.-.+--++..--.+..-..
T Consensus 557 ~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~ 635 (759)
T KOG0211|consen 557 EEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEE 635 (759)
T ss_pred HhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHH
Confidence 4455666655553 45689988888875532222222 233456789999999999999999888877665544444
Q ss_pred HHHhhhhh--ccChhhHHHHHHHHhhhhc
Q 002696 726 LRNLSSYY--YKDANLLFCVRIAQGLVHM 752 (891)
Q Consensus 726 Lr~l~~~~--~~d~~~~f~~~iAqGll~~ 752 (891)
++++.... ..|.+.+|.+..|+|.+.+
T Consensus 636 v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 636 VLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 44444333 3556799999999998765
No 122
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.59 E-value=3.6e+02 Score=26.08 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhc--CChhhHHHHHHHHhhchhhhhhhh
Q 002696 518 VIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYL--GKQESVEATAEVSKTFNEKIRKYC 595 (891)
Q Consensus 518 ~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~l--G~~e~~~~li~~L~~~~~~i~r~~ 595 (891)
....|.|.++-+++..++-+-....++.+.+..+ .+.+...+-+.++.+++ |+-+++-.+++. ..++..+.-
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~---d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~---~~~~~~~~~ 119 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAP---DPELKPLARLRLARILLQQGQYDEALATLQQ---IPDEAFKAL 119 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---ccCcchHHH
Confidence 4457888899888888888777777776654321 23344445566666655 444444444433 333334444
Q ss_pred hHHHHHHHHhcCCCHHHHHH
Q 002696 596 DMTLLSCAYAGTGNVLKVQN 615 (891)
Q Consensus 596 ~~~~~glAyaGTGn~~~iq~ 615 (891)
.....|-+|..-|+......
T Consensus 120 ~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 120 AAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHH
Confidence 56677888888887654443
No 123
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=39.44 E-value=41 Score=40.42 Aligned_cols=142 Identities=19% Similarity=0.182 Sum_probs=84.6
Q ss_pred ChhhHHHHHHHHHHHHhhhccccccCC--Cccchh-------hhhHHHHHHHHhcCCC--C-chHHHHHHHHHHHhhhcc
Q 002696 59 DPGLQKVALESMRTEIRTSTSSMTSVP--KPLKFL-------RPHYGTLKAYYETMPD--S-DLKKYMADILSVLALTMS 126 (891)
Q Consensus 59 d~~l~~~aL~~L~~~i~~~tss~tsvp--kplk~l-------~~~~~~l~~~ye~~~~--~-~~k~~~AdilS~l~~t~~ 126 (891)
+.++...||.+|.+-|++...=.-.|+ ++-+|- ..|...|+++|=+... + ..---.-..|.||| |-
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy--~l 442 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY--NL 442 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH--hc
Confidence 347888999999999998844222222 123322 3456666666632210 0 00112334577775 54
Q ss_pred Ccccc---cchhhhhcCCCCCCCCcccHHHHHHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCCHHHHH
Q 002696 127 AEGER---ESLKYRLLGSEGDIGSWGHEYVRNLA-----GEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAV 198 (891)
Q Consensus 127 ~~~~~---~~L~y~L~~~~~d~~~wghEYvr~l~-----~ei~~~y~~~~~~~~~~~~L~~lv~~iv~~~l~~n~e~eAv 198 (891)
.++++ ||++.+|.=.-.|-.-| .-+=-+|+ .|.|..|++..+=.+..-|-.- -+==-||.-|+|.||+
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lW-NRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry---NlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLW-NRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY---NLGISCMNLGAYKEAV 518 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHH-HHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh---hhhhhhhhhhhHHHHH
Confidence 55554 78999999766676778 66666776 5788999876543332111000 0111366679999999
Q ss_pred HHHHhcCC
Q 002696 199 DLLMEVED 206 (891)
Q Consensus 199 dlalE~~~ 206 (891)
..+|++=.
T Consensus 519 ~hlL~AL~ 526 (579)
T KOG1125|consen 519 KHLLEALS 526 (579)
T ss_pred HHHHHHHH
Confidence 99998633
No 124
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=38.39 E-value=3.6e+02 Score=29.89 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=44.8
Q ss_pred cchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHh-------hhhccC--------CCcHHHHHHHHH
Q 002696 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLAL-------GLLCIS--------NPKVNVMDTLSR 693 (891)
Q Consensus 629 ~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lAL-------GL~~aG--------t~~~~aid~L~~ 693 (891)
.+|..++-++|+.++=+.--......+|.+..+.+++.||..+.-++ |..... .....+.+.|.+
T Consensus 42 ~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~ 121 (298)
T PF12719_consen 42 AVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTK 121 (298)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHH
Confidence 67777777777766555411122222333333444555555443332 222211 223466777777
Q ss_pred hhcCCchHHHHHHHHHHHHHc
Q 002696 694 LSHDTDSEVAMAAVISLGLIG 714 (891)
Q Consensus 694 l~~D~d~~Vr~~AiiALGlV~ 714 (891)
+..+.++.++..|+-|++=++
T Consensus 122 ~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 122 FLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHhcCCHHHHHHHHHHHHHHH
Confidence 766667777766666665443
No 125
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.96 E-value=48 Score=42.94 Aligned_cols=88 Identities=19% Similarity=0.185 Sum_probs=61.8
Q ss_pred ccchhHHHHHhHHhhhcc-hhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcH--HHHHHHHHhhcCCchHHHH
Q 002696 628 EAYQGPAVLGIAMVAMAE-ELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV--NVMDTLSRLSHDTDSEVAM 704 (891)
Q Consensus 628 ~~vrr~avlglglI~~~~-~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~--~aid~L~~l~~D~d~~Vr~ 704 (891)
++.|++|.+++|-.|+=. ....+..+-+|.-+..+.+|.||....+|+|=+-..-||. .--+-|.+..+|++..||.
T Consensus 937 p~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRk 1016 (1251)
T KOG0414|consen 937 PELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRK 1016 (1251)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHHH
Confidence 468999999999776543 3333344445555555889999999999998554433322 2234577889999999999
Q ss_pred HHHHHHHHHcC
Q 002696 705 AAVISLGLIGS 715 (891)
Q Consensus 705 ~AiiALGlV~a 715 (891)
+|++-|..+..
T Consensus 1017 ta~lvlshLIL 1027 (1251)
T KOG0414|consen 1017 TALLVLSHLIL 1027 (1251)
T ss_pred HHHHHHHHHHH
Confidence 99988876543
No 126
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=37.79 E-value=8.4e+02 Score=29.78 Aligned_cols=182 Identities=13% Similarity=-0.034 Sum_probs=92.8
Q ss_pred ccchhhHHhHhhhhcCC-CchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-HHH
Q 002696 424 WDVDSGLAQIDKYFHST-DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQI 501 (891)
Q Consensus 424 ~~~~~~l~~l~~yL~s~-~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~-~~v 501 (891)
++.++++..+++.+... .....+-+...+|.++.... +-+.++..+...+...... ..+.+.+|.++...++ ++.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g-~~~eA~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG-KHLEALADLSKSIELDPRV--TQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHCCCHHHH
Confidence 35567777777766532 22344456666677664332 2344777777666533221 1245566676665554 345
Q ss_pred HHHHHHHhc-CCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHH
Q 002696 502 RHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEAT 580 (891)
Q Consensus 502 ~e~L~~~L~-d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~l 580 (891)
.+.+...+. ++. ..+ +-+.+|.++.-.++-+-+...++..++..+. .......+|..+...|+-+.+...
T Consensus 385 ~~~~~~al~~~p~-~~~----~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~----~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 385 EEDFDKALKLNSE-DPD----IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD----FIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred HHHHHHHHHhCCC-CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc----CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555554 332 222 4456677776666655444444433332221 122233455555556766666666
Q ss_pred HHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhh
Q 002696 581 AEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGH 619 (891)
Q Consensus 581 i~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~ 619 (891)
++...... |-. ......+|.+|...|+.....+.+.-
T Consensus 456 ~~~al~~~-P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 456 FRRCKKNF-PEA-PDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHhC-CCC-hHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 66544321 111 12234567777788875544444333
No 127
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=37.55 E-value=1.7e+02 Score=26.81 Aligned_cols=63 Identities=30% Similarity=0.517 Sum_probs=45.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCCchHHHH
Q 002696 35 EDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYM 114 (891)
Q Consensus 35 ~~lseed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~ 114 (891)
.-+-+|-.+|++|++.|=+.+ |.+|.+.++|+|..+ |+.-...+..+|+.- .|..+
T Consensus 20 ~~~~~e~~~L~eEI~~Lr~qv-e~nPevtr~A~EN~r-------------------L~ee~rrl~~f~~~g----erE~l 75 (86)
T PF12711_consen 20 SYLEEENEALKEEIQLLREQV-EHNPEVTRFAMENIR-------------------LREELRRLQSFYVEG----EREML 75 (86)
T ss_pred chhHHHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHH-------------------HHHHHHHHHHHHHhh----HHHHH
Confidence 344455589999999998888 789999999999742 333344567777422 47888
Q ss_pred HHHHHHH
Q 002696 115 ADILSVL 121 (891)
Q Consensus 115 AdilS~l 121 (891)
+..+|.|
T Consensus 76 ~~eis~L 82 (86)
T PF12711_consen 76 LQEISEL 82 (86)
T ss_pred HHHHHHH
Confidence 8877776
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=36.06 E-value=1.5e+02 Score=37.58 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccChHHHHHH--HHhhcccCCCCCh--HHHHHHHHHHHHccCC
Q 002696 179 ELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLY--LTSAAKYLPGPDD--MLVLDIAYMIYLKFEE 254 (891)
Q Consensus 179 ~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Y--l~~~~~~~~~p~~--~~vl~~~~~iy~~~~~ 254 (891)
+|++++-+||..|.+|..||.|++-++....-.+.....|..-.-.+ +....+--..|+. .++|+.+-+.|++++.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~ 1160 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA 1160 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999999988766666655443222222 2222221112222 2799999999999998
Q ss_pred HHHHHHHHHhCCChH-HHHHHHHh
Q 002696 255 FPNALQIALFLDNMQ-YVKQIFTS 277 (891)
Q Consensus 255 ~~~al~~al~l~d~~-~i~~i~~~ 277 (891)
|-.|-...-+.+|.- ..+.++++
T Consensus 1161 Yh~AtKKfTQAGdKl~AMraLLKS 1184 (1416)
T KOG3617|consen 1161 YHAATKKFTQAGDKLSAMRALLKS 1184 (1416)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHhc
Confidence 888777766666543 34444443
No 129
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.87 E-value=1.3e+03 Score=32.55 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=53.5
Q ss_pred hhHHHHHHHHhhchhhhhhhhhHHHHHHHH--hcCCC-----HHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhc
Q 002696 575 ESVEATAEVSKTFNEKIRKYCDMTLLSCAY--AGTGN-----VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMA 644 (891)
Q Consensus 575 e~~~~li~~L~~~~~~i~r~~~~~~~glAy--aGTGn-----~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~ 644 (891)
+.++..++.+..-.||+.|.+-.+++||-. .|++- ...++.|+....+...+ .||+.+..+++++.-.
T Consensus 915 ~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p--~VqtwSL~al~~i~~s 989 (2067)
T KOG1822|consen 915 SLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSP--VVQTWSLHALALILDS 989 (2067)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCc--hhhhhHHHHHHHHHcC
Confidence 468889999999999999999999999975 34332 45677788776654443 8999999999998744
No 130
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=35.63 E-value=6.5e+02 Score=31.04 Aligned_cols=154 Identities=18% Similarity=0.077 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhhcCccccCchhHHHHHHH-HHhhhcCCh----hhHHHHHHHHhh---chhhhhhhhhHHHHHHHHhcCC
Q 002696 537 EVAQAIIFALMDRSESELGEPLTRLIPLG-LGLLYLGKQ----ESVEATAEVSKT---FNEKIRKYCDMTLLSCAYAGTG 608 (891)
Q Consensus 537 ~~~e~ll~~L~~~~~t~l~e~~~r~~~lg-lgLl~lG~~----e~~~~li~~L~~---~~~~i~r~~~~~~~glAyaGTG 608 (891)
+.++.++..+....+ .+++-+|+=++. +++++=.-+ ..+..+++.|.. +.+|..|..++.++.-----||
T Consensus 87 ~~V~~~~~h~lRg~e--skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 87 ELVAGTFYHLLRGTE--SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred HHHHHHHHHHHhccc--CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 355555555554333 356777766544 355543222 244555555542 3567778777766544434466
Q ss_pred CH--HHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHH---------------HHHHHHH-----------HH-
Q 002696 609 NV--LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE---------------MAIRSLE-----------HL- 659 (891)
Q Consensus 609 n~--~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e---------------~~~~~l~-----------~L- 659 (891)
|. ..+..|+.....|.++ .|||.|.+.|--=-.-.|--.| .+..-++ .|
T Consensus 165 neen~~~n~l~~~vqnDPS~--EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ 242 (885)
T COG5218 165 NEENRIVNLLKDIVQNDPSD--EVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLM 242 (885)
T ss_pred ChHHHHHHHHHHHHhcCcHH--HHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhh
Confidence 63 4555566666777776 8999988765321111110001 1111111 11
Q ss_pred ---hhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHh
Q 002696 660 ---LQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 694 (891)
Q Consensus 660 ---~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l 694 (891)
+.+.+-.||.++.=+++-.+.-+.+.+++++|+++
T Consensus 243 ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~l 280 (885)
T COG5218 243 EWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFL 280 (885)
T ss_pred hhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 23345567888888888888888888999999888
No 131
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.59 E-value=7.6e+02 Score=31.65 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhc----CChhhhHHHhhccChHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002696 172 ASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEV----EDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYM 247 (891)
Q Consensus 172 ~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~----~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~ 247 (891)
.+.+.++++...-=.|+.+.|++.+|++--+|+ +.-+.|.+|+|...-..++.||.+....-....|-
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dh-------- 433 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDH-------- 433 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchh--------
Confidence 456778888888889999999999999999983 44456677777777788888887776554433331
Q ss_pred HHHccCCHHHHHHHHHhCCChHHHHHHHHhcc
Q 002696 248 IYLKFEEFPNALQIALFLDNMQYVKQIFTSCD 279 (891)
Q Consensus 248 iy~~~~~~~~al~~al~l~d~~~i~~i~~~~~ 279 (891)
-.-.|-|.+++.|.+.+.+.+..++
T Consensus 434 -------ttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 434 -------TTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred -------HHHHHHHHHHhcchHHHHHHHhcCC
Confidence 1122344455555555555555554
No 132
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.80 E-value=1.1e+03 Score=30.03 Aligned_cols=266 Identities=15% Similarity=0.142 Sum_probs=143.6
Q ss_pred HhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCC
Q 002696 433 IDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDA 512 (891)
Q Consensus 433 l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~~v~e~L~~~L~d~ 512 (891)
|.+.....++-.|+-|+=+|=-|-.|..-. .+-.++...+-+++..+.-.|+.. ++-++ ..+++++..-...+.+.
T Consensus 105 lmkD~t~~~d~yr~~AiR~L~~I~d~~m~~--~iery~kqaivd~~~avSsaalvs-s~hll-~~~~~~vkrw~neiqea 180 (865)
T KOG1078|consen 105 LMKDMTGKEDLYRAAAIRALCSIIDGTMLQ--AIERYMKQAIVDKNPAVSSAALVS-SYHLL-PISFDVVKRWANEVQEA 180 (865)
T ss_pred HHhhccCCCcchhHHHHHHHHhhcCcchhH--HHHHHHHhHeeccccccchHHHHH-Hhhhh-cccHHHHHHHHHhhhhc
Confidence 344455567788999998887776554322 144566666666665555444332 23223 34566655544444432
Q ss_pred CCchHHHHHHHHHhhhhhcCCC-CHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhh----HHHHHHHHhhc
Q 002696 513 KSPLDVIAFSAISLGLIYVGSC-NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES----VEATAEVSKTF 587 (891)
Q Consensus 513 ~~~~e~~~~AaLaLGLi~lGs~-n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~----~~~li~~L~~~ 587 (891)
..+... -.=.-|+|++|-=.. +.-+...+++-+.. .-+++++.+.+.+.++.-.+-.... .-..++.+.+.
T Consensus 181 ~~s~~~-m~QyHalglLyqirk~drla~sklv~~~~~---~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~ 256 (865)
T KOG1078|consen 181 VNSDNI-MVQYHALGLLYQIRKNDRLAVSKLVQKFTR---GSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRH 256 (865)
T ss_pred cCcHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHcc---ccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhc
Confidence 211111 112457888885533 34455666665432 3357778877776555444433222 12345555554
Q ss_pred hhhhhhhhhHHHHHHHHhcCCCH--HHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCCh
Q 002696 588 NEKIRKYCDMTLLSCAYAGTGNV--LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQ 665 (891)
Q Consensus 588 ~~~i~r~~~~~~~glAyaGTGn~--~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np 665 (891)
++...-+-++-++.-.+.-++.. .+++.|--+|.+... -.|-+|+--|.-++|..|-...-|.+=++.|..+.|
T Consensus 257 K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~---~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~N- 332 (865)
T KOG1078|consen 257 KSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKV---ALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSN- 332 (865)
T ss_pred hhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHH---HHHHHHHHHHHHHHHhCCccccccchhHHhhhcccc-
Confidence 44444444444444444444442 355555555554322 456677778888888887333344455666666555
Q ss_pred hHHhHHHHHhhhhccCCCcHHHHHHH----HHhhcCCchH---HHHHHHHHHHHH
Q 002696 666 NIRRAVPLALGLLCISNPKVNVMDTL----SRLSHDTDSE---VAMAAVISLGLI 713 (891)
Q Consensus 666 ~VR~ga~lALGL~~aGt~~~~aid~L----~~l~~D~d~~---Vr~~AiiALGlV 713 (891)
|.-+.+|+..+.. ||+..-++.| ..++||-+++ |...|+.||-..
T Consensus 333 --rsIat~AITtLLK-TG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~ 384 (865)
T KOG1078|consen 333 --RSIATLAITTLLK-TGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLK 384 (865)
T ss_pred --cchhHHHHHHHHH-hcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhh
Confidence 5556677776653 4444444444 4567777665 445666666544
No 133
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=33.59 E-value=49 Score=38.79 Aligned_cols=88 Identities=24% Similarity=0.365 Sum_probs=47.6
Q ss_pred HHHHHhcCChhhhHHHhhccChHHHH---HHHHhhcccCCCCCh-HHHHHHHHHHHHccCCHHHHHHHHHhCCCh-----
Q 002696 198 VDLLMEVEDLDLLVEHVDATNFKRTC---LYLTSAAKYLPGPDD-MLVLDIAYMIYLKFEEFPNALQIALFLDNM----- 268 (891)
Q Consensus 198 vdlalE~~~ld~i~~~vd~~~~~rv~---~Yl~~~~~~~~~p~~-~~vl~~~~~iy~~~~~~~~al~~al~l~d~----- 268 (891)
+++-||..|-+.-..-++ +-+|.| .|...|- ..|.. .-.|++++.++.|.+.|..|-..|=||-+.
T Consensus 260 lgl~iEl~Rr~l~~~~~~--~~kR~lELAAYFThc~---LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 260 LGLSIELERRELPKDPVE--DQKRNLELAAYFTHCK---LQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHCTS-TTTHH--HHHHHHHHHHHHCCS------HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHHhccccchh--hHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 466777666553222221 223444 5665544 23333 358999999999999999988776543222
Q ss_pred --HHHHHHHHhcc-hhHHHHHHHHH
Q 002696 269 --QYVKQIFTSCD-DLLRKKQFCYI 290 (891)
Q Consensus 269 --~~i~~i~~~~~-d~~~~~Qlaf~ 290 (891)
+..++|+..|+ ++.-+.||-|+
T Consensus 335 ~a~qArKil~~~e~~~tDa~~i~yD 359 (422)
T PF06957_consen 335 VAEQARKILQACERNPTDAHEIDYD 359 (422)
T ss_dssp HHHHHHHHHHHHCCS--BSS--S--
T ss_pred HHHHHHHHHHHHhcCCCCceecCCC
Confidence 35666777663 44445555554
No 134
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=33.48 E-value=5.6e+02 Score=26.51 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=15.0
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHhh
Q 002696 522 SAISLGLIYVGSCNEEVAQAIIFALMD 548 (891)
Q Consensus 522 AaLaLGLi~lGs~n~~~~e~ll~~L~~ 548 (891)
+-+.+|.++...++.+.+...++.+.+
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445666666666665555555554443
No 135
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=33.34 E-value=4.4e+02 Score=27.44 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=56.6
Q ss_pred hcCChhHHhHHHHHhhhhccCCC-cHHH-HHHHHHhhcCCchHHHHHHHHHHHHHcCCCC--ch-----H-HHHHHHHhh
Q 002696 661 QYGEQNIRRAVPLALGLLCISNP-KVNV-MDTLSRLSHDTDSEVAMAAVISLGLIGSGTN--NA-----R-IAGMLRNLS 730 (891)
Q Consensus 661 ~~~np~VR~ga~lALGL~~aGt~-~~~a-id~L~~l~~D~d~~Vr~~AiiALGlV~aGtn--n~-----r-v~~~Lr~l~ 730 (891)
.+.+..||..+--+|--++-..+ ..++ ...+....++.+..||..+.-.+..+.-..+ .+ . +.++...+.
T Consensus 104 ~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~ 183 (228)
T PF12348_consen 104 GDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALV 183 (228)
T ss_dssp G---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHH
Confidence 34567899999999888887777 6777 7889999999999999999888888876665 11 1 233344433
Q ss_pred hhh-ccChhhHHHHHHHHhhhh
Q 002696 731 SYY-YKDANLLFCVRIAQGLVH 751 (891)
Q Consensus 731 ~~~-~~d~~~~f~~~iAqGll~ 751 (891)
+.. ..+|.+|-.++-+...++
T Consensus 184 ~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 184 KLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHH
Confidence 332 356677777777666553
No 136
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.75 E-value=61 Score=36.42 Aligned_cols=78 Identities=28% Similarity=0.491 Sum_probs=54.6
Q ss_pred cCCCHHHH-HHHHHHHHHHH--HhCCCChhhHHHHHHHHHHHHhhhcc--ccccCCCccchhhhhHHHHHHHHhcCCCCc
Q 002696 35 EDLSEEDL-ALKQQLELYVE--RVQDPDPGLQKVALESMRTEIRTSTS--SMTSVPKPLKFLRPHYGTLKAYYETMPDSD 109 (891)
Q Consensus 35 ~~lseed~-~~k~~l~~~v~--~l~e~d~~l~~~aL~~L~~~i~~~ts--s~tsvpkplk~l~~~~~~l~~~ye~~~~~~ 109 (891)
+++||||. +|=-|| ++.. +=.|+|+.+++--||.|..+.-|-.+ .+-+ +.-|+.|.++|+..++++
T Consensus 231 ee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~--------kgvYpilRElhk~e~ded 301 (353)
T KOG2973|consen 231 EELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRS--------KGVYPILRELHKWEEDED 301 (353)
T ss_pred cccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHh--------cCchHHHHHHhcCCCcHH
Confidence 59999997 455666 3333 45688999999999999887766533 2222 245899999999887776
Q ss_pred hHHHHHHHHHHH
Q 002696 110 LKKYMADILSVL 121 (891)
Q Consensus 110 ~k~~~AdilS~l 121 (891)
.++.+=-+.+++
T Consensus 302 ~~~ace~vvq~L 313 (353)
T KOG2973|consen 302 IREACEQVVQML 313 (353)
T ss_pred HHHHHHHHHHHH
Confidence 555555555555
No 137
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=31.75 E-value=94 Score=30.18 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 002696 687 VMDTLSRLSHDTDSEVAMAAVISLGLIGS 715 (891)
Q Consensus 687 aid~L~~l~~D~d~~Vr~~AiiALGlV~a 715 (891)
+-+.+..+++++|+.||..|+.|+..+|.
T Consensus 87 ~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 87 AKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44556777888999999999999887764
No 138
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.95 E-value=1.2e+03 Score=29.64 Aligned_cols=72 Identities=11% Similarity=0.194 Sum_probs=49.3
Q ss_pred HhhhhcCCCchhHHHHHHHHHHhhcCCCCCh---hhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC--HHHHHHHHH
Q 002696 433 IDKYFHSTDNHVIAGALLGVGIVNCGIRNDC---DPALALLSEYVGREDACIRIGAIMGLGISYAGTQN--DQIRHKLST 507 (891)
Q Consensus 433 l~~yL~s~~~~~k~GAllaLGli~~G~~~e~---d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~--~~v~e~L~~ 507 (891)
+.+-|..+++|+||..+=-|--. +|. +|.+......|+..+.++|--|+++++-+|-.+.+ +|.-+++-.
T Consensus 104 ~RkDLQHPNEyiRG~TLRFLckL-----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~ 178 (948)
T KOG1058|consen 104 YRKDLQHPNEYIRGSTLRFLCKL-----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIES 178 (948)
T ss_pred HhhhccCchHhhcchhhhhhhhc-----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHH
Confidence 34556788899997666544332 232 35666667778888999999999999999987442 355555555
Q ss_pred Hh
Q 002696 508 IL 509 (891)
Q Consensus 508 ~L 509 (891)
.|
T Consensus 179 fL 180 (948)
T KOG1058|consen 179 FL 180 (948)
T ss_pred HH
Confidence 55
No 139
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.46 E-value=4.3e+02 Score=33.26 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccChHHHHHHHHhhcccCCCCChHHHHHHHHHHHHcc
Q 002696 173 SIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKF 252 (891)
Q Consensus 173 ~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~~~ 252 (891)
+.+.|..|..++-....++=.|..+-.-|.+.+|.+.=.+.++ .+|++..=.. ..+++
T Consensus 489 d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle------------------~E~~~~~qV~----lLL~m 546 (829)
T KOG2280|consen 489 DEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLE------------------LEPRSGEQVP----LLLKM 546 (829)
T ss_pred chHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHh------------------cCCCccchhH----HHhcc
Confidence 3455666666665554556678888888888888885555543 2343332111 23477
Q ss_pred CCHHHHHHHHHhCCChHHHHHHHHhcchhHHHHHHHHHHHh
Q 002696 253 EEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILAR 293 (891)
Q Consensus 253 ~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~lar 293 (891)
+++..||+.|++.+|+++|..++-.+.+.+++-++--.|-+
T Consensus 547 ~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~ 587 (829)
T KOG2280|consen 547 KDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRN 587 (829)
T ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887777666555444433
No 140
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=30.03 E-value=2.4e+02 Score=30.89 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=37.7
Q ss_pred HHHHHHhhhhccCCCCccchhHHHHHhHHhhhcch----hhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHH
Q 002696 612 KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEE----LGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNV 687 (891)
Q Consensus 612 ~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~----~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~a 687 (891)
..++|+++.....++ .+++.+..++|-.+.-.. +..--...++..++.+.+|.+|.-+.-||.=++....|...
T Consensus 13 ~l~~Ll~lL~~t~dp--~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 13 ELQKLLCLLESTEDP--FIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHhcCCCh--HHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 445555555443332 455555555555432211 11112233455556666677776666666655555555555
Q ss_pred HH
Q 002696 688 MD 689 (891)
Q Consensus 688 id 689 (891)
|+
T Consensus 91 Ik 92 (254)
T PF04826_consen 91 IK 92 (254)
T ss_pred HH
Confidence 54
No 141
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.71 E-value=1.3e+03 Score=29.53 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHH----HHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHH
Q 002696 650 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMD----TLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGM 725 (891)
Q Consensus 650 e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid----~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~ 725 (891)
+.+..++++.+-..|-++||-+-=+|+-+-- -++.++. +.....+|||...|+-| |-+..+=+|...|..+
T Consensus 312 vlainiLgkFL~n~d~NirYvaLn~L~r~V~--~d~~avqrHr~tIleCL~DpD~SIkrra---lELs~~lvn~~Nv~~m 386 (866)
T KOG1062|consen 312 VLAINILGKFLLNRDNNIRYVALNMLLRVVQ--QDPTAVQRHRSTILECLKDPDVSIKRRA---LELSYALVNESNVRVM 386 (866)
T ss_pred HHHHHHHHHHhcCCccceeeeehhhHHhhhc--CCcHHHHHHHHHHHHHhcCCcHHHHHHH---HHHHHHHhccccHHHH
Confidence 5566777787777778899977777665533 3444443 34556789999988754 3444444454555566
Q ss_pred HHHhhhhhccChhhHHHHHHHHhhhhcC
Q 002696 726 LRNLSSYYYKDANLLFCVRIAQGLVHMG 753 (891)
Q Consensus 726 Lr~l~~~~~~d~~~~f~~~iAqGll~~G 753 (891)
.+.|-.|..+- ...|-+-+|.||.++-
T Consensus 387 v~eLl~fL~~~-d~~~k~~~as~I~~la 413 (866)
T KOG1062|consen 387 VKELLEFLESS-DEDFKADIASKIAELA 413 (866)
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHHH
Confidence 66666665332 4467788888887764
No 142
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.67 E-value=1.7e+02 Score=37.33 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=56.4
Q ss_pred HHHHHhcCChhhhHHHhhccChHHHH---HHHHhhcccCCCCChH-HHHHHHHHHHHccCCHHHHHHHHHhCCC------
Q 002696 198 VDLLMEVEDLDLLVEHVDATNFKRTC---LYLTSAAKYLPGPDDM-LVLDIAYMIYLKFEEFPNALQIALFLDN------ 267 (891)
Q Consensus 198 vdlalE~~~ld~i~~~vd~~~~~rv~---~Yl~~~~~~~~~p~~~-~vl~~~~~iy~~~~~~~~al~~al~l~d------ 267 (891)
++|.+|.+|-+ +.+.+-.+.| .|...|- .+|... -.|+++++.|.|+++|.+|-..|.+|-.
T Consensus 1047 ~gL~~E~~Rr~-----l~~~~~~~~~ElAaYFt~~~---Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1047 VGLSVELERRK-----LKKPNLEQQLELAAYFTHCK---LQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred hhheeeeeecc-----cCCchHHHHHHHHHHhhcCC---CCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 57777777755 4445555553 3443332 334443 5889999999999999999877766422
Q ss_pred -hHHHHHHHHhc-chhHHHHHHHHHH
Q 002696 268 -MQYVKQIFTSC-DDLLRKKQFCYIL 291 (891)
Q Consensus 268 -~~~i~~i~~~~-~d~~~~~Qlaf~l 291 (891)
.+.++++..++ .|+.-++|+-|+-
T Consensus 1119 ~A~q~rki~~a~eknp~Da~~l~yd~ 1144 (1202)
T KOG0292|consen 1119 VAEQARKIKQAAEKNPTDAYELNYDP 1144 (1202)
T ss_pred HHHHHHHHHHHhhcCcccccccCccc
Confidence 14566677766 4777777877653
No 143
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=29.58 E-value=7.5e+02 Score=31.79 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=53.1
Q ss_pred HHHHHHhhcCChhHHhHHHHHhhhhccCCC----cHHHHHHH----HHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHH
Q 002696 654 RSLEHLLQYGEQNIRRAVPLALGLLCISNP----KVNVMDTL----SRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGM 725 (891)
Q Consensus 654 ~~l~~L~~~~np~VR~ga~lALGL~~aGt~----~~~aid~L----~~l~~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~ 725 (891)
+.+...+..+||-+|-..-..++-....++ ....++.+ -+.++|.+.+||-+|.=++|-|+-=.+...+.++
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333333467788888887777666555544 33344443 4457899999999999999998866666666677
Q ss_pred HHHhhh
Q 002696 726 LRNLSS 731 (891)
Q Consensus 726 Lr~l~~ 731 (891)
|..+.+
T Consensus 454 L~~~~~ 459 (815)
T KOG1820|consen 454 LKDLDK 459 (815)
T ss_pred HHhhcc
Confidence 766553
No 144
>PLN03218 maturation of RBCL 1; Provisional
Probab=29.51 E-value=1.5e+03 Score=30.17 Aligned_cols=16 Identities=19% Similarity=0.109 Sum_probs=8.9
Q ss_pred ccccchhhHHhHhhhh
Q 002696 422 LLWDVDSGLAQIDKYF 437 (891)
Q Consensus 422 ~~~~~~~~l~~l~~yL 437 (891)
..++.++|+.+++...
T Consensus 449 k~g~~e~A~~lf~~M~ 464 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQ 464 (1060)
T ss_pred hCcCHHHHHHHHHHHH
Confidence 3456666666655443
No 145
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=29.19 E-value=8.5e+02 Score=27.26 Aligned_cols=188 Identities=15% Similarity=0.117 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCCchHHHHHHHHHHHhhhccCcccccchhhhhcCC
Q 002696 62 LQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGS 141 (891)
Q Consensus 62 l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~ 141 (891)
.-...++.+++.|+..|+-+ | .+|.+...+-..+=+..+.+-++.+..++++-- .|+
T Consensus 33 ~d~~~~~~~~~~IK~~t~~f-S------~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~----------~L~------ 89 (297)
T PF13170_consen 33 FDAERFKEISKYIKKNTGWF-S------PLRGNHRFILAALLDISFEDPEEAFKEVLDIYE----------KLK------ 89 (297)
T ss_pred CCHHHHHHHHHHHHHccccc-c------cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHH----------HHH------
Confidence 33567888889999876532 2 356665544444333333323666777766553 111
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhh---
Q 002696 142 EGDIGSWGHEYVRNLAGEIAQEYAKRQTDEAS---IDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVD--- 215 (891)
Q Consensus 142 ~~d~~~wghEYvr~l~~ei~~~y~~~~~~~~~---~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd--- 215 (891)
+-+-|.++|.-=.+.-|.. +.+..+.++- ...+-....+-.||.....+++-|+=||.-.+..+.+-+.++
T Consensus 90 --~~gFk~~~y~~laA~~i~~-~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y 166 (297)
T PF13170_consen 90 --EAGFKRSEYLYLAALIILE-EEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCY 166 (297)
T ss_pred --HhccCccChHHHHHHHHHH-hcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHH
Confidence 2345556666544444433 3211111111 235666777788888889999999999998777776654432
Q ss_pred ---------ccChHHHHHHHHhhcccCCCCChHHHHHHHHHHHHccC-----CHHHHHHHHHhCCChH-HHHHHHH
Q 002696 216 ---------ATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFE-----EFPNALQIALFLDNMQ-YVKQIFT 276 (891)
Q Consensus 216 ---------~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~~~~-----~~~~al~~al~l~d~~-~i~~i~~ 276 (891)
++|.-+.+.++++......++. ..=...+.+.+.+.+ .|...++++-.+++++ .+.+.+.
T Consensus 167 ~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~-v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ 241 (297)
T PF13170_consen 167 QKLADAGFKKGNDLQFLSHILALSEGDDQEK-VARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIK 241 (297)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHhccccchHH-HHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHH
Confidence 2555667777776664332222 111112223333322 3677777776666665 4333333
No 146
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=28.26 E-value=6.8e+02 Score=25.86 Aligned_cols=59 Identities=7% Similarity=-0.004 Sum_probs=28.9
Q ss_pred HhhhhccCCCcH-HHHHHHHHhhcC-CchHHHHHHHHHHHHHcCCCCc-hHHHHHHHHhhhh
Q 002696 674 ALGLLCISNPKV-NVMDTLSRLSHD-TDSEVAMAAVISLGLIGSGTNN-ARIAGMLRNLSSY 732 (891)
Q Consensus 674 ALGL~~aGt~~~-~aid~L~~l~~D-~d~~Vr~~AiiALGlV~aGtnn-~rv~~~Lr~l~~~ 732 (891)
++|..+...++. ++++.+.++... |+..-..-|.+-+|.+...+++ .+....++.|...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445555444443 355566665433 3221112345556666655554 3455566666554
No 147
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.06 E-value=1.3e+03 Score=29.14 Aligned_cols=94 Identities=23% Similarity=0.261 Sum_probs=58.3
Q ss_pred HhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHH----H-HHhhcCCchHHHHHHHHHHH
Q 002696 637 GIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDT----L-SRLSHDTDSEVAMAAVISLG 711 (891)
Q Consensus 637 glglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~----L-~~l~~D~d~~Vr~~AiiALG 711 (891)
++++-+=.+|---..+...+..++.+.++++||-+-=.|..++.++...+++.. . ..+-.++|-.|||-|+==|
T Consensus 315 ~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLL- 393 (938)
T KOG1077|consen 315 SLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLL- 393 (938)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHH-
Confidence 333333344411234445566667888999999998889999888888887752 2 3333489999998665322
Q ss_pred HHcCCCCchH--HHHHHHHhhh
Q 002696 712 LIGSGTNNAR--IAGMLRNLSS 731 (891)
Q Consensus 712 lV~aGtnn~r--v~~~Lr~l~~ 731 (891)
--|+--.|++ |..+|+-|..
T Consensus 394 Y~mcD~~Nak~IV~elLqYL~t 415 (938)
T KOG1077|consen 394 YAMCDVSNAKQIVAELLQYLET 415 (938)
T ss_pred HHHhchhhHHHHHHHHHHHHhh
Confidence 1123334554 4677776643
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=27.98 E-value=2.5e+02 Score=25.18 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhcCChhH-HhHHHHHhhhhccCCCc-HHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCc-hHHHHH
Q 002696 650 EMAIRSLEHLLQYGEQNI-RRAVPLALGLLCISNPK-VNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNN-ARIAGM 725 (891)
Q Consensus 650 e~~~~~l~~L~~~~np~V-R~ga~lALGL~~aGt~~-~~aid~L~~l~~-D~d~~Vr~~AiiALGlV~aGtnn-~rv~~~ 725 (891)
+.+...+..+.+....+. ..-+.+-+|.++...++ ..+++.+..+.. +|+......+...+|.+..+.++ ....+.
T Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 98 (119)
T TIGR02795 19 ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKAT 98 (119)
T ss_pred HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHH
Confidence 555555555543321111 12234556666666666 447777776643 55533223445666666665554 344455
Q ss_pred HHHhhhh
Q 002696 726 LRNLSSY 732 (891)
Q Consensus 726 Lr~l~~~ 732 (891)
++++...
T Consensus 99 ~~~~~~~ 105 (119)
T TIGR02795 99 LQQVIKR 105 (119)
T ss_pred HHHHHHH
Confidence 5554443
No 149
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=27.88 E-value=1.6e+02 Score=30.04 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=45.7
Q ss_pred cchhHHHHHhHHhhhc-chhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcC
Q 002696 629 AYQGPAVLGIAMVAMA-EELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHD 697 (891)
Q Consensus 629 ~vrr~avlglglI~~~-~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D 697 (891)
-+||++.+.+.-.... .. -+...+++..+.++.+..||.|++.+|.-.+.-.+ ..+++.+.+...+
T Consensus 120 ~~rR~~~~~~~~~~~~~~~--~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~-~~v~~~l~~~~~~ 186 (197)
T cd06561 120 WVRRAAIVLLLRLIKKETD--FDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP-ERVIAFLEKNGLS 186 (197)
T ss_pred HHHHHHHHHHHHHHHhccc--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH-HHHHHHHHHHHHh
Confidence 5677776665443333 11 27888899999888889999999999998876633 3466666655433
No 150
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=27.65 E-value=93 Score=22.82 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHH
Q 002696 48 LELYVERVQDPDPGLQKVALESMRTEI 74 (891)
Q Consensus 48 l~~~v~~l~e~d~~l~~~aL~~L~~~i 74 (891)
++.++..|+.+++++++.|+..|+.+.
T Consensus 14 i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 14 LPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 788999999999999999999998764
No 151
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=27.30 E-value=6.1e+02 Score=24.98 Aligned_cols=162 Identities=14% Similarity=0.066 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHhc-CCCCchHHHHHHH
Q 002696 446 AGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-QIRHKLSTILN-DAKSPLDVIAFSA 523 (891)
Q Consensus 446 ~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~-~v~e~L~~~L~-d~~~~~e~~~~Aa 523 (891)
+.+.+.+|..+.... +.+.+...+...+....... .+...+|.+|.-.++. +..+.+...+. ++. .. .+-
T Consensus 31 ~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~----~~~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQG-DLEVAKENLDKALEHDPDDY--LAYLALALYYQQLGELEKAEDSFRRALTLNPN-NG----DVL 102 (234)
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CH----HHH
Confidence 344444444443222 22335555544443221111 2334455555544443 34444444443 221 11 133
Q ss_pred HHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHHHhhchhhhhhhhhHHHHHHH
Q 002696 524 ISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCA 603 (891)
Q Consensus 524 LaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~L~~~~~~i~r~~~~~~~glA 603 (891)
..+|.++...++.+.+...++........ .........+|..+...|+-+.+...++........ .......++..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la~~ 178 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLY--PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--RPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcccc--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--ChHHHHHHHHH
Confidence 44555555555544444444433221110 111111222444445556666666555554432211 11234456667
Q ss_pred HhcCCCHHHHHHHHhh
Q 002696 604 YAGTGNVLKVQNLLGH 619 (891)
Q Consensus 604 yaGTGn~~~iq~LL~~ 619 (891)
|...|+.......+.-
T Consensus 179 ~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 179 YYLRGQYKDARAYLER 194 (234)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 7777775544444443
No 152
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=27.26 E-value=25 Score=39.63 Aligned_cols=84 Identities=17% Similarity=0.170 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhhccCc------ccccchhhhhcC-CCCCCCCcccHHHHHHHHHHHHHHHHhccCCCC-HHHHHHHHH
Q 002696 111 KKYMADILSVLALTMSAE------GERESLKYRLLG-SEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEAS-IDDLMELVQ 182 (891)
Q Consensus 111 k~~~AdilS~l~~t~~~~------~~~~~L~y~L~~-~~~d~~~wghEYvr~l~~ei~~~y~~~~~~~~~-~~~L~~lv~ 182 (891)
++.=|..++.|+++-|++ ++-.+|.|.+.. ...|...| .++..+|--+|.+.|++.++-=.. -..+.++.+
T Consensus 212 ~E~EANFiayLac~~s~d~~frYSgy~~~l~y~l~~l~~~d~e~~-~~l~~~l~~~v~~d~~~~~~fW~~y~~~i~~~~~ 290 (318)
T PF12725_consen 212 SEDEANFIAYLACINSPDPYFRYSGYLFALRYCLNALYRKDPEAY-KELYSQLSPGVKKDLKENRAFWQKYEGPIEEVSD 290 (318)
T ss_pred CHHHHHHHHHHHHhcCCChheeHHHHHHHHHHHHHHHHhcCHHHH-HHHHHhCCHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 456688899998877754 244678888887 45788887 788888888888777765431000 025677788
Q ss_pred HHHHHHhcCCCHH
Q 002696 183 EIVAFHMKHNAEP 195 (891)
Q Consensus 183 ~iv~~~l~~n~e~ 195 (891)
.+.+-++|.|.-+
T Consensus 291 ~~yd~yLKaN~q~ 303 (318)
T PF12725_consen 291 FVYDTYLKANNQE 303 (318)
T ss_pred HHHHHHHHhcCch
Confidence 8899999988533
No 153
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.96 E-value=2e+02 Score=37.46 Aligned_cols=102 Identities=24% Similarity=0.253 Sum_probs=63.6
Q ss_pred HHhhhhccCCCC--ccchhHHHHHhHHhhhcchh----h-HHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCC-----
Q 002696 616 LLGHCAQHHEKG--EAYQGPAVLGIAMVAMAEEL----G-LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP----- 683 (891)
Q Consensus 616 LL~~~~~~~~d~--~~vrr~avlglglI~~~~~~----g-~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~----- 683 (891)
|+.+|-++.+++ .-.|..++|+||.+--.-+. | ..++..-+-.++.+.-|.||.++.+|||-.- |++
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl-~~~~d~fd 678 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL-SNGSDNFD 678 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh-cccccccc
Confidence 566677666652 24678888999887533321 1 1455555666666667899999999999653 322
Q ss_pred -cHHH-------------HH--------HHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 002696 684 -KVNV-------------MD--------TLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (891)
Q Consensus 684 -~~~a-------------id--------~L~~l~~D~d~~Vr~~AiiALGlV~aGtn 718 (891)
+..+ ++ .|-.+.+|....||..-++++.=.+.|-.
T Consensus 679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 1111 11 23344678888888777777777766644
No 154
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.97 E-value=1.5e+03 Score=28.73 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=50.7
Q ss_pred HHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHh-HHHHHhhhhccCCCcHHHHH
Q 002696 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRR-AVPLALGLLCISNPKVNVMD 689 (891)
Q Consensus 611 ~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~-ga~lALGL~~aGt~~~~aid 689 (891)
..+|+|=-+|. +.+ ++.+-...++++-|+--+|...+.=.+++-+.+.+.|+.||- +.-|-.|+++= .+-.+++.
T Consensus 299 LCvqKLr~fie-dsD--qNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-kNl~eIVk 374 (877)
T KOG1059|consen 299 LCVQKLRIFIE-DSD--QNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK-KNLMEIVK 374 (877)
T ss_pred HHHHHHhhhhh-cCC--ccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh-hhHHHHHH
Confidence 34555544444 333 278888888888888888866566666777777888888874 44566666621 22334455
Q ss_pred HHHHhh
Q 002696 690 TLSRLS 695 (891)
Q Consensus 690 ~L~~l~ 695 (891)
+|...+
T Consensus 375 ~LM~~~ 380 (877)
T KOG1059|consen 375 TLMKHV 380 (877)
T ss_pred HHHHHH
Confidence 555443
No 155
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.56 E-value=3.8e+02 Score=33.33 Aligned_cols=85 Identities=16% Similarity=0.084 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHhcCCCCchHHHHH
Q 002696 443 HVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYA-GTQNDQIRHKLSTILNDAKSPLDVIAF 521 (891)
Q Consensus 443 ~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~-Gs~~~~v~e~L~~~L~d~~~~~e~~~~ 521 (891)
.+|-.|+.+++........-.+.++.+|.+.+++.-+.+|.-|+.+|-.+.. +.-+++..+.++..|.|.++. +..+
T Consensus 388 EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~d--vRe~ 465 (823)
T KOG2259|consen 388 EVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVD--VREA 465 (823)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHH--HHHH
Confidence 5888999999998887766666789999999999989999999999887654 556889999999999886543 3333
Q ss_pred HHHHhhhh
Q 002696 522 SAISLGLI 529 (891)
Q Consensus 522 AaLaLGLi 529 (891)
+-.=|+..
T Consensus 466 l~elL~~~ 473 (823)
T KOG2259|consen 466 LRELLKNA 473 (823)
T ss_pred HHHHHHhc
Confidence 44444443
No 156
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.11 E-value=3.9e+02 Score=32.05 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=61.9
Q ss_pred cchhHHHHHhHHhhhcch-----hhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhcc-------CCCcHHHHHHHHHhhc
Q 002696 629 AYQGPAVLGIAMVAMAEE-----LGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCI-------SNPKVNVMDTLSRLSH 696 (891)
Q Consensus 629 ~vrr~avlglglI~~~~~-----~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~a-------Gt~~~~aid~L~~l~~ 696 (891)
.+|+.|.-+||.++.+-| -++.++..++..|.+..|..|-.-+..+|....- +..-.++...|+.+-.
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~ 352 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFD 352 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHH
Confidence 788888888898888844 2334566677777777777777777777665532 2333455667888888
Q ss_pred CCchHHHHHHHHHHHHHc
Q 002696 697 DTDSEVAMAAVISLGLIG 714 (891)
Q Consensus 697 D~d~~Vr~~AiiALGlV~ 714 (891)
|-++.+|.+|+...|.+.
T Consensus 353 se~~~~R~aa~~Lfg~L~ 370 (533)
T KOG2032|consen 353 SEDDKMRAAAFVLFGALA 370 (533)
T ss_pred hcChhhhhhHHHHHHHHH
Confidence 889999999998888765
No 157
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=23.67 E-value=5e+02 Score=30.38 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=22.3
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Q 002696 158 GEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLME 203 (891)
Q Consensus 158 ~ei~~~y~~~~~~~~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE 203 (891)
.++++.+.+..+.++++. . -+...++..|+|.+||.++=+
T Consensus 186 ~~ai~lle~L~~~~pev~---~---~LA~v~l~~~~E~~AI~ll~~ 225 (395)
T PF09295_consen 186 DEAIELLEKLRERDPEVA---V---LLARVYLLMNEEVEAIRLLNE 225 (395)
T ss_pred HHHHHHHHHHHhcCCcHH---H---HHHHHHHhcCcHHHHHHHHHH
Confidence 344455555555554321 1 234444556889999887544
No 158
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.32 E-value=4.3e+02 Score=34.87 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=68.9
Q ss_pred hhhhhhhhhHHHHHHHHhcCCC--HHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHH-HHHHHHHHhhcCC
Q 002696 588 NEKIRKYCDMTLLSCAYAGTGN--VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM-AIRSLEHLLQYGE 664 (891)
Q Consensus 588 ~~~i~r~~~~~~~glAyaGTGn--~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~-~~~~l~~L~~~~n 664 (891)
.+|-.+.+++++++=-++=+.+ ....+-|+.+...+.+. -+|..+|+|+|=.+++-|---|- ..-+..+ +++.+
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p--~IRsN~VvalgDlav~fpnlie~~T~~Ly~r-L~D~~ 1011 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSP--RIRSNLVVALGDLAVRFPNLIEPWTEHLYRR-LRDES 1011 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCc--eeeecchheccchhhhcccccchhhHHHHHH-hcCcc
Confidence 3455666666555544443333 23444556655545554 89999999999888887621122 2222333 47889
Q ss_pred hhHHhHHHHHhhhhccCCCcHHHHHHHHHh---hcCCchHHHH
Q 002696 665 QNIRRAVPLALGLLCISNPKVNVMDTLSRL---SHDTDSEVAM 704 (891)
Q Consensus 665 p~VR~ga~lALGL~~aGt~~~~aid~L~~l---~~D~d~~Vr~ 704 (891)
+.||+.+-+.|.-+ ..++..++-..|..+ .-|++..++-
T Consensus 1012 ~~vRkta~lvlshL-ILndmiKVKGql~eMA~cl~D~~~~Isd 1053 (1251)
T KOG0414|consen 1012 PSVRKTALLVLSHL-ILNDMIKVKGQLSEMALCLEDPNAEISD 1053 (1251)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHhcccHHHHHHHhcCCcHHHHH
Confidence 99999999998866 344555555555544 4677766653
No 159
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=23.28 E-value=76 Score=31.59 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.4
Q ss_pred HHHccCCHHHHHHHHHhCCChHHHHHHHHhc
Q 002696 248 IYLKFEEFPNALQIALFLDNMQYVKQIFTSC 278 (891)
Q Consensus 248 iy~~~~~~~~al~~al~l~d~~~i~~i~~~~ 278 (891)
-|.+.++|.+|+..|++|+.|-.+-++|+.+
T Consensus 6 N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~ 36 (141)
T PF08625_consen 6 NLLRQKDYKEALRLALKLDHPFRLLKILKDL 36 (141)
T ss_pred HHHHhhhHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3567789999999999999999999999864
No 160
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=23.08 E-value=1.4e+02 Score=22.48 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHH
Q 002696 48 LELYVERVQDPDPGLQKVALESMRTEI 74 (891)
Q Consensus 48 l~~~v~~l~e~d~~l~~~aL~~L~~~i 74 (891)
+..||..|+.+|+++++.|+-.|..+-
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 678999999999999999999988764
No 161
>PF13934 ELYS: Nuclear pore complex assembly
Probab=22.71 E-value=3.2e+02 Score=29.27 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=57.3
Q ss_pred HHHhcCCCHHHHHHHHHhcCC----hhhhHHH-hhccChHHHHHHHHhhcccCCCCChHHHHHHHHHHHHccCCHHHHHH
Q 002696 186 AFHMKHNAEPEAVDLLMEVED----LDLLVEH-VDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQ 260 (891)
Q Consensus 186 ~~~l~~n~e~eAvdlalE~~~----ld~i~~~-vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~~~~~~~~al~ 260 (891)
..+|.|+++.+||+++.+..- -++|.+. +.+..+.-.+.|+....+-+.++++ ++....+ +..+..++|+.
T Consensus 86 ~W~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~---~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 86 FWLLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEA---LTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred HHHhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHH---HHHHHHH-HHcCCHHHHHH
Confidence 467899999999999999743 2333333 3446677777888877766555533 3333333 45678888888
Q ss_pred HHHhCCChH---HHHHHHHhc
Q 002696 261 IALFLDNMQ---YVKQIFTSC 278 (891)
Q Consensus 261 ~al~l~d~~---~i~~i~~~~ 278 (891)
+.=...+.. ..+.+++.|
T Consensus 162 ~~R~~~~~~~~~l~e~l~~~~ 182 (226)
T PF13934_consen 162 FQRSYPDELRRRLFEQLLEHC 182 (226)
T ss_pred HHHhCchhhhHHHHHHHHHHH
Confidence 775555544 555555554
No 162
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=22.66 E-value=1.9e+02 Score=35.19 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhcCChhHHhHHHHHhhhhccCCCcHHHHH
Q 002696 610 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMD 689 (891)
Q Consensus 610 ~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~~np~VR~ga~lALGL~~aGt~~~~aid 689 (891)
..++..++..|.++.. .||..|+=+|-.++-.++--...+-+++..|++..++..+-.|--||--+.--.|....-.
T Consensus 58 ~~Ai~a~~DLcEDed~---~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~ 134 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDV---QIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTG 134 (556)
T ss_dssp HHHHHHHHHHHT-SSH---HHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhcccH---HHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4577788888864322 6888888888888877661123444455567777787777777777655544444443333
Q ss_pred HHHHhh--cCCchHHHHHHH
Q 002696 690 TLSRLS--HDTDSEVAMAAV 707 (891)
Q Consensus 690 ~L~~l~--~D~d~~Vr~~Ai 707 (891)
++++.. ...|+.||--++
T Consensus 135 lf~~i~~~~~~de~~Re~~l 154 (556)
T PF05918_consen 135 LFSQIESSKSGDEQVRERAL 154 (556)
T ss_dssp HHHHHH---HS-HHHHHHHH
T ss_pred HHHHHHhcccCchHHHHHHH
Confidence 444443 123455665554
No 163
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=22.37 E-value=9.5e+02 Score=31.63 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=85.2
Q ss_pred HHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhh----cCChhHHhHHHHHhhhhc-cCCCcH
Q 002696 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ----YGEQNIRRAVPLALGLLC-ISNPKV 685 (891)
Q Consensus 611 ~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~----~~np~VR~ga~lALGL~~-aGt~~~ 685 (891)
.++..||.-..+... .||.-|.=|+|.|..+-|+ +.+..+++.-.. -.++..=.|+|+|||.+. +|==-+
T Consensus 341 ~vie~Lls~l~d~dt---~VrWSaAKg~grvt~rlp~--~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDT---VVRWSAAKGLGRVTSRLPP--ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcc---hhhHHHHHHHHHHHccCcH--HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 366777776554433 7999999999999999883 555555543332 222445559999999763 332233
Q ss_pred ----HHHHHHHHhhcC--------CchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhh------ccChhhHHHHHHHH
Q 002696 686 ----NVMDTLSRLSHD--------TDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYY------YKDANLLFCVRIAQ 747 (891)
Q Consensus 686 ----~aid~L~~l~~D--------~d~~Vr~~AiiALGlV~aGtnn~rv~~~Lr~l~~~~------~~d~~~~f~~~iAq 747 (891)
+++-++.+-.|- .-..||-+|....=-+.=+-+...+..++.+|++-. -++.++|.++.-|.
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 555555443332 234577777665443332222234566666666542 45668888877664
Q ss_pred hhhhcCC-Cce
Q 002696 748 GLVHMGK-GLL 757 (891)
Q Consensus 748 Gll~~G~-G~~ 757 (891)
.=+.|. ||.
T Consensus 496 -qE~VGR~~n~ 505 (1133)
T KOG1943|consen 496 -QENVGRQGNF 505 (1133)
T ss_pred -HHHhccCCCC
Confidence 345676 777
No 164
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=22.03 E-value=1.1e+02 Score=30.05 Aligned_cols=49 Identities=24% Similarity=0.218 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHh
Q 002696 37 LSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYE 103 (891)
Q Consensus 37 lseed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye 103 (891)
=|+|||+||-+...-| ++.|...+..+++--. ..+.++.|++.|+++-+
T Consensus 14 DS~~DQ~lKl~VRD~V--------------l~~l~~~~~~~~~~~e----a~~~i~~~~~~Ie~~A~ 62 (130)
T PF09551_consen 14 DSPEDQALKLKVRDAV--------------LEYLSPWLSQAKSKEE----AREVIRENLPEIEQIAE 62 (130)
T ss_pred CCHHHHHHHHHHHHHH--------------HHHHHHHhccCCCHHH----HHHHHHHhHHHHHHHHH
Confidence 4899999998865433 3344444444433222 25567777777777743
No 165
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=21.91 E-value=1.7e+03 Score=28.39 Aligned_cols=136 Identities=17% Similarity=0.229 Sum_probs=87.8
Q ss_pred chhhHHHHHHHhcccccc-cchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHH-HHHhhcCCCCHHHHHH
Q 002696 407 KEHGKMSAAASLGMILLW-DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALA-LLSEYVGREDACIRIG 484 (891)
Q Consensus 407 ~~~~k~sA~aslGlI~~~-~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~-lL~~~L~~~~~~v~~g 484 (891)
+.-.+-.|+.++|.|-.- -..+-+..|-+-|...+-..|.+..+|++++.--...- +++. ++.+| ..++..+|-|
T Consensus 938 kK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF--tVLPalmneY-rtPe~nVQnG 1014 (1172)
T KOG0213|consen 938 KKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF--TVLPALMNEY-RTPEANVQNG 1014 (1172)
T ss_pred HHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch--hhhHHHHhhc-cCchhHHHHh
Confidence 344577899999998752 22334666666677788888999999999985432221 1343 34444 5567789989
Q ss_pred HHHHHHHH--hccCCCHHHHHHHHHHhc----CCCCc-hH--HHHHHHHHhhhhhcCCCCHHHHHHHHHHHh
Q 002696 485 AIMGLGIS--YAGTQNDQIRHKLSTILN----DAKSP-LD--VIAFSAISLGLIYVGSCNEEVAQAIIFALM 547 (891)
Q Consensus 485 A~lGLGla--y~Gs~~~~v~e~L~~~L~----d~~~~-~e--~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~ 547 (891)
.+-+|... |.|....+.+=.+.|.|. |.+.. -+ .....-++|| -.|++++++.-.|+.++.
T Consensus 1015 VLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg--~~g~g~eda~iHLLN~iW 1084 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALG--VPGTGCEDALIHLLNLIW 1084 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcC--CCCcCcHHHHHHHHHHhh
Confidence 88777766 467666666666666664 43321 11 1223456778 358999988888887653
No 166
>PHA03033 hypothetical protein; Provisional
Probab=21.54 E-value=42 Score=32.59 Aligned_cols=52 Identities=25% Similarity=0.370 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhh--ccccccC---------CCccchhhhhHHHHHHHH
Q 002696 45 KQQLELYVERVQDPDPGLQKVALESMRTEIRTS--TSSMTSV---------PKPLKFLRPHYGTLKAYY 102 (891)
Q Consensus 45 k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~--tss~tsv---------pkplk~l~~~~~~l~~~y 102 (891)
|.=+|..|.-+ . ...||..++.++.+- +.+||+. .|.+|++|+|++..+.+|
T Consensus 77 Kdyie~~v~~~-----n-i~r~l~n~~~~~~~~~i~~~m~~~~~i~~~y~~~~~~~y~~~~~~~~~nly 139 (142)
T PHA03033 77 ADYIEDIVDDI-----N-ILRALDNFKEIIEKDKIADIMSHMKFIEDNYETDKLLKYIRDHIPEEKNLY 139 (142)
T ss_pred HHHHHHHHHHH-----H-HHHHHHHHHHHHHhhhHHHHHHHHHhhccccccchHHHHHHHhCcccccee
Confidence 34455555533 1 256888888887654 5577763 244555555555554444
No 167
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=21.52 E-value=1e+03 Score=25.50 Aligned_cols=130 Identities=12% Similarity=0.028 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHHHhh-chh-hhhhhhhHHHHHHHHhcCCC
Q 002696 532 GSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKT-FNE-KIRKYCDMTLLSCAYAGTGN 609 (891)
Q Consensus 532 Gs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~L~~-~~~-~i~r~~~~~~~glAyaGTGn 609 (891)
..++-+-+..++..+...... .....-+...|.-..-.|+.+++...++.... .++ +-. ...++..+..+|+
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~----~~~l~~~li~~~~ 195 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAA--PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA----RNALAWLLIDMGD 195 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH----HHHHHHHHCTTCH
T ss_pred HHhHHHHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHCCC
Confidence 344555555666655432111 12222234445555556777777777666443 222 222 2235566788888
Q ss_pred HHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhhc--CChhHHhHHH
Q 002696 610 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY--GEQNIRRAVP 672 (891)
Q Consensus 610 ~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~~--~np~VR~ga~ 672 (891)
....+.++........+ +-.-...+|.+....|++ +.+.+.+...... .||.+...-+
T Consensus 196 ~~~~~~~l~~~~~~~~~--~~~~~~~la~~~~~lg~~---~~Al~~~~~~~~~~p~d~~~~~~~a 255 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPD--DPDLWDALAAAYLQLGRY---EEALEYLEKALKLNPDDPLWLLAYA 255 (280)
T ss_dssp HHHHHHHHHHHHHH-HT--SCCHCHHHHHHHHHHT-H---HHHHHHHHHHHHHSTT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHCcC--HHHHHHHHHHHhcccccc---ccccccccccccccccccccccccc
Confidence 77666666555443222 223345678888888888 8899988887653 3555554433
No 168
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=20.90 E-value=1.4e+02 Score=26.41 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHhcCCC--------HHHHHHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHH
Q 002696 601 SCAYAGTGN--------VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRS 655 (891)
Q Consensus 601 glAyaGTGn--------~~~iq~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~ 655 (891)
+++++|+.. ...++.+.+++.+...- .+|..+..++|||+..++ |.+...+.
T Consensus 10 aighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~--siRGT~fy~Lglis~T~~-G~~~L~~~ 69 (73)
T PF14668_consen 10 AIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVL--SIRGTCFYVLGLISSTEE-GAEILDEL 69 (73)
T ss_pred HHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCcc--chHHHHHHHHHHHhCCHH-HHHHHHHc
No 169
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.71 E-value=1e+03 Score=30.72 Aligned_cols=180 Identities=16% Similarity=0.128 Sum_probs=95.2
Q ss_pred hHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHh-hcCCC-----CHHHHHH-H----HHHHHHHhccCC
Q 002696 429 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSE-YVGRE-----DACIRIG-A----IMGLGISYAGTQ 497 (891)
Q Consensus 429 ~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~-~L~~~-----~~~v~~g-A----~lGLGlay~Gs~ 497 (891)
-+....++|...++|+.-.|+=|+-...- ..++ .++..|.+ |.+.+ +..+++| | +.++|=...+-.
T Consensus 769 vl~i~ld~LkdedsyvyLnaI~gv~~Lce-vy~e--~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~ 845 (982)
T KOG4653|consen 769 VLAIALDTLKDEDSYVYLNAIRGVVSLCE-VYPE--DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK 845 (982)
T ss_pred HHHHHHHHhcccCceeeHHHHHHHHHHHH-hcch--hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH
Confidence 35566677889999999999988776543 3333 48888887 55532 3456666 2 233443333322
Q ss_pred CHHHHHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhH
Q 002696 498 NDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 577 (891)
Q Consensus 498 ~~~v~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~ 577 (891)
+-+....+..+.|++.....++.|.+|.=+....-+-.+..-+.++.+..-..++=.-..+|+++.-+..+..|.++..
T Consensus 846 -~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 846 -AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred -HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 2333333334445533345566676665554433221222222222222110111012466777777888888887655
Q ss_pred HHHHHHHhhchhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhccCCCCccchhHHHHHh
Q 002696 578 EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGI 638 (891)
Q Consensus 578 ~~li~~L~~~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avlgl 638 (891)
-+++.... .+....+++|...|.+| .++-.+-+++
T Consensus 925 Lpilr~~l------------------------~Dl~~tl~~~vr~~~dd--~~klhaql~l 959 (982)
T KOG4653|consen 925 LPILRLLL------------------------IDLDETLLSYVRQHDDD--GLKLHAQLCL 959 (982)
T ss_pred HHHHHHHH------------------------HHHHHHHHHHHhcCchh--HHHHHHHHHH
Confidence 44443321 13455677777666554 4554444433
No 170
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=20.49 E-value=7.1e+02 Score=27.48 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhcc-ccccCCC--ccchhhhhHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 002696 45 KQQLELYVERVQDPDPGLQKVALESMRTEIRTSTS-SMTSVPK--PLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVL 121 (891)
Q Consensus 45 k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~ts-s~tsvpk--plk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l 121 (891)
++.+..+..-++.+++.++..||+.+.+++..+-. ..++-+. +-..-.+-...+....++. .++.+..++.-+++|
T Consensus 63 ~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 63 KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKL 141 (298)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 56677788888788999999999999999998732 2222221 0111222333444444444 445688888889999
Q ss_pred hhhccCcccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHh
Q 002696 122 ALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKR 167 (891)
Q Consensus 122 ~~t~~~~~~~~~L~y~L~~~~~d~~~wghEYvr~l~~ei~~~y~~~ 167 (891)
...-...+. ..+--+|.=-.|++..-..+++|+..+-+...|...
T Consensus 142 lL~~~i~~~-~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s 186 (298)
T PF12719_consen 142 LLSGRISDP-PKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASS 186 (298)
T ss_pred HhcCCCCcH-HHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcC
Confidence 732222211 334445555578887776789999999999998743
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=20.28 E-value=7.8e+02 Score=23.68 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=36.1
Q ss_pred HHhhhcCChhhHHHHHHHHhh-chhhhhhhhhHHHHHHHHhcCCCHHHHHHHHhhhhcc-CCCCccchhHHHHHhHHhhh
Q 002696 566 LGLLYLGKQESVEATAEVSKT-FNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQH-HEKGEAYQGPAVLGIAMVAM 643 (891)
Q Consensus 566 lgLl~lG~~e~~~~li~~L~~-~~~~i~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~-~~d~~~vrr~avlglglI~~ 643 (891)
-.+-.+|+++++-.+.+.-.. --+.-.+..+.+.+|.+|--.|.......+|+-+... .+++-.-...+.+++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455666655555544322 1112233344555555555566654444444433322 11100112234455666666
Q ss_pred cch
Q 002696 644 AEE 646 (891)
Q Consensus 644 ~~~ 646 (891)
|++
T Consensus 89 gr~ 91 (120)
T PF12688_consen 89 GRP 91 (120)
T ss_pred CCH
Confidence 665
No 172
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=20.03 E-value=9.7e+02 Score=32.80 Aligned_cols=36 Identities=33% Similarity=0.361 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 002696 683 PKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (891)
Q Consensus 683 ~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtn 718 (891)
-...++.+|..++++.+-.+|+.|+++||++.++.+
T Consensus 1222 ~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp 1257 (1692)
T KOG1020|consen 1222 LKEKVLILLMYFSKDKDGELRRKALINLGFICIQHP 1257 (1692)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCc
Confidence 345677889999999999999999999999998866
Done!