Query 002696
Match_columns 891
No_of_seqs 284 out of 799
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 21:46:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002696.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_86-89//hhsearch_pdb/002696hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ady_A RPN2, 26S proteasome re 1.0 1 1 1359.7 54.0 730 49-836 18-795 (963)
2 4ady_A RPN2, 26S proteasome re 1.0 1 1 451.8 39.4 526 174-787 68-681 (963)
3 1oyz_A Hypothetical protein YI 1.0 1 1 82.0 21.5 223 429-715 24-250 (280)
4 1oyz_A Hypothetical protein YI 1.0 1 1 79.6 22.0 223 466-750 24-248 (280)
5 1b3u_A Protein (protein phosph 1.0 1 1 76.9 19.9 298 410-748 258-583 (588)
6 1b3u_A Protein (protein phosph 1.0 1 1 75.6 19.9 108 46-167 10-117 (588)
7 3ltm_A Alpha-REP4; protein eng 1.0 1 1 72.2 16.4 81 629-719 127-207 (211)
8 3ltj_A Alpharep-4; protein eng 1.0 1 1 69.4 17.3 76 629-714 122-197 (201)
9 3ltm_A Alpha-REP4; protein eng 1.0 1 1 67.1 17.4 49 661-713 122-170 (211)
10 2vgl_B AP-2 complex subunit be 1.0 1 1 66.4 25.7 99 46-162 13-111 (591)
No 1
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=1.00 E-value=1 Score=1359.74 Aligned_cols=730 Identities=19% Similarity=0.279 Sum_probs=678.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999937999346999999999998121466656897652012019999998710999702899999999976514676
Q 002696 49 ELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAE 128 (891)
Q Consensus 49 ~~~v~~l~e~d~~l~~~AL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~~ 128 (891)
.+++++|+|+|++|+.+||++|+++|+++ |.+++++++.||++||+.+|+ .|+++|+|+|||| ||++
T Consensus 18 ~~~l~lL~e~~~~lk~~aL~~l~~~vd~~----------w~eia~~i~~ie~l~ed~~f~-~r~laalvaSkvy--y~Lg 84 (963)
T 4ady_A 18 APLLALLRENQDSVKTYALESINNVVDQL----------WSEISNELPDIEALYDDDTFS-DREMAALIASKVY--YNLG 84 (963)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHH----------HHHHHTTHHHHHHHHSCTTCT-THHHHHHHHHHHH--HHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH--EECC
T ss_conf 99999865996689999999999888601----------999983288999997689961-6889999998883--0236
Q ss_pred CCCCCHHHHHC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----------CCH-HHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 63000356530-79889898623799999999999999850487----------798-8999999999999943899899
Q 002696 129 GERESLKYRLL-GSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDE----------ASI-DDLMELVQEIVAFHMKHNAEPE 196 (891)
Q Consensus 129 ~~~~~L~y~L~-~~~~d~~~wgheYvr~L~~ei~~~y~~~~~~~----------~~~-~~L~~Lv~~iv~~~l~~n~e~~ 196 (891)
++++||+|||+ |+.||+++ +||||+||+++|||+|++.+.+. ..+ ++|++||++||+|||+||+|++
T Consensus 85 ~~~~al~yaL~aG~~fd~~~-~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl~hnae~~ 163 (963)
T 4ady_A 85 EYESAVKYALAAKDRFDIDE-KSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKL 163 (963)
T ss_dssp CHHHHHHHHHHHGGGSCTTS-CSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 66899999985798678888-53579999999999999998630355432223345688999999999999984898998
Q ss_pred HHHHHHHCCCHHHHHHHHHC-------CCHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHCCC--CHHHHHHHHHHC
Q ss_conf 99998722880226887510-------37488999997512468998908--89999999997128--999999999947
Q 002696 197 AVDLLMEVEDLDLLVEHVDA-------TNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYMIYLKFE--EFPNALQIALFL 265 (891)
Q Consensus 197 AidlalE~~rld~i~~~vd~-------~~~~ri~~Yl~~~~~~~~~p~~~--~il~~l~~iy~k~~--~~~~al~~ai~l 265 (891)
|||||||++|||+|+++|++ +|+.|+|+|+++|++++++|+++ ++|+++++||++++ +|+++|+|+++|
T Consensus 164 AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~dy~~a~~~ai~L 243 (963)
T 4ady_A 164 ALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNL 243 (963)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 87899998239999999985312445466899999999985236998478999999999999807812399999999975
Q ss_pred CCHHHHHHHHHH---CCHHHHHHHHHHHHHH---HCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 994789999985---1616778999999874---1011123478999963079999987054752458878888411699
Q 002696 266 DNMQYVKQIFTS---CDDLLRKKQFCYILAR---HGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEP 339 (891)
Q Consensus 266 ~d~~~i~~il~~---~~d~~~~~Qlaf~Lar---q~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~fl~l~k~l~i~~~ 339 (891)
||++.++++|.+ |+|.+++|||||+|+| |+|+.++.+.... .+..+++.+||+|..++++|++|++++|.+|+
T Consensus 244 nD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~-~e~~~kL~~ILsg~~~~~Lyl~FL~~~n~~d~ 322 (963)
T 4ady_A 244 NDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELTA-QGYDPALLNILSGLPTCDYYNTFLLNNKNIDI 322 (963)
T ss_dssp TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-TTCCHHHHHHTTSHHHHHHHHHHHHHHCCCCH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-CCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH
T ss_conf 99889999999877264388899999997102136799999874333-30068999986799738999999986565430
Q ss_pred CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99478998411058887663237798869999999997602587643345788998988775333456144789998700
Q 002696 340 KSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLG 419 (891)
Q Consensus 340 k~~e~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~sA~aslG 419 (891)
++|+++ |++++ +| ++++|+|++|+|||||+||++|+||+++.+ |++|+++|+||+|++|+|
T Consensus 323 ~~l~~~-K~~ld-~r--------~s~~~~A~~f~Naf~naG~~~D~~l~~~~~---------Wl~k~~~~~k~sA~aSLG 383 (963)
T 4ady_A 323 GLLNKS-KSSLD-GK--------FSLFHTAVSVANGFMHAGTTDNSFIKANLP---------WLGKAQNWAKFTATASLG 383 (963)
T ss_dssp HHHHHH-HHHSC-TT--------SHHHHHHHHHHHHHHTTTTCCCHHHHHCHH---------HHHHCCTHHHHHHHHHHH
T ss_pred HHHHHH-HHHHC-CH--------HHHHHHHHHHHHHHHHCCCCCCHHHHCCHH---------HHHCCCHHHHHHHHHHHH
T ss_conf 008899-86303-21--------467879999988887278775424320305---------440464089999998700
Q ss_pred CCCCCCCHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC--------HHHHHHHHHH
Q ss_conf 1204661025986854203---8990368999999977516988991359999985208988--------7999999999
Q 002696 420 MILLWDVDSGLAQIDKYFH---STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED--------ACIRIGAIMG 488 (891)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~---s~~~~ik~GAllaLGli~~g~~~e~d~~l~lL~~~L~~~~--------~~v~~gA~lG 488 (891)
+||.||.++|+++|++||+ ++++++++||++|+|++++|++++ ++++|.++|.+++ +.+|+||++|
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~---~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD---TTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH---HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 1003854889999998624567971999999999989862897179---9999999870766333456548999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98985259887799999987138998068888999996544227999999999999996048433484147777889886
Q 002696 489 LGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGL 568 (891)
Q Consensus 489 LGlay~Gs~~e~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgL 568 (891)
||++|+||+++++++.|++++.|++. .+..+|++|||++|+||||.++++.|++++++ ++ +++++|++++|+||
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~~--~~~~~AalALGli~vGTgn~~ai~~LL~~~~e---~~-~e~vrR~aalgLGl 534 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDSA--TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE---TQ-HGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---CS-CHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC---CC-CHHHHHHHHHHHHH
T ss_conf 89986678988999999999956778--78999999976351256889999999999862---58-48999999999875
Q ss_pred HHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf 42489224999999974101323435568999988724787999999995300157889522127787867763023122
Q 002696 569 LYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG 648 (891)
Q Consensus 569 l~lG~~e~~~~~l~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avl~lglI~~~~~~g 648 (891)
+++|+++.++.+++.|..+++|+.|+++++++||||+||||+.+||+|||+|.+|.++ +|||+||+|||+|++|++
T Consensus 535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d--~VRraAViaLGlI~~g~~-- 610 (963)
T 4ady_A 535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSND--DVRRAAVIALGFVLLRDY-- 610 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTSSSC--
T ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHCCCCH--
T ss_conf 5079867799999999717878887999999999861789899999999872448747--999999999875206987--
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCH---HHHHH
Q ss_conf 879999999996209946884899996311268982779999987422984589999999999870799906---89999
Q 002696 649 LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNA---RIAGM 725 (891)
Q Consensus 649 ~e~~~~~l~~L~~~~~~~VR~gv~lALGl~~agt~~~~vid~L~~l~~D~d~~Vr~~AiiALGlV~agtnn~---ri~~~ 725 (891)
+|+++++++|++|+||+||+|+|+|||++|+|||+++++++|++++||+|++||++|++|||+||+||||+ |++++
T Consensus 611 -e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~ 689 (963)
T 4ady_A 611 -TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADI 689 (963)
T ss_dssp -SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf -7799999999866988899989999987546998579999999980699789999999999998257864324689999
Q ss_pred HHHHHHHHC---CCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH-HHHHH
Q ss_conf 998652201---47256999999976553089930003457899988867999999999862033332337334-79998
Q 002696 726 LRNLSSYYY---KDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYH-YVLYF 801 (891)
Q Consensus 726 lr~l~~~~~---~d~~~~f~~~lAqGll~~G~G~~tls~~~sd~~~~~~~a~agLl~~l~~~~d~~~~i~~~~h-~l~~~ 801 (891)
||+|++||+ +|++++||+|+||||+||||||+||||+||||++++++|++||++|+++| || ||+||
T Consensus 690 l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~~~~~~a~~Gl~~f~q~w----------yw~pl~~~ 759 (963)
T 4ady_A 690 NKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQFW----------YWFPLAHF 759 (963)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTCCBCHHHHHHHHHHTTTT----------TCGGGGGG
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH----------HHHHHHHH
T ss_conf 99999997244645888999999987775079955887621667887799999999999999----------98899999
Q ss_pred HHHHCCCCEEEEECC-CCCCCEEEEEECCCCCCCCC
Q ss_conf 842025616565249-99841012650431112224
Q 002696 802 LVLAMQPRMLLTVDE-NLKPLSVPVRVGQAVDVVGQ 836 (891)
Q Consensus 802 l~lA~~Pr~li~ld~-~l~~~~v~vrvg~~vd~vg~ 836 (891)
|++||+|||+||+|+ |||+|+..+++......+..
T Consensus 760 lsla~~Pt~li~l~e~dL~~p~~~~~~~~~~~~f~y 795 (963)
T 4ady_A 760 LSLSFTPTTVIGIRGSDQAIPKFQMNCYAKEDAFSY 795 (963)
T ss_dssp GGGGEEECBEEEEETTTTBEECCEEEECSCTTTTCC
T ss_pred HHHHCCCCEEEEECCCCCCCCCEEEEECCCHHHCCC
T ss_conf 998558867987650016777558765899353379
No 2
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=1.00 E-value=1 Score=451.83 Aligned_cols=526 Identities=18% Similarity=0.235 Sum_probs=392.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH---HHHHCCCHHHHHHHHHHHCCC-----------CCCCCHH
Q ss_conf 88999999999999943899899999987228802268---875103748899999751246-----------8998908
Q 002696 174 IDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLV---EHVDATNFKRTCLYLTSAAKY-----------LPGPDDM 239 (891)
Q Consensus 174 ~~~L~~Lv~~iv~~~l~~n~e~~AidlalE~~rld~i~---~~vd~~~~~ri~~Yl~~~~~~-----------~~~p~~~ 239 (891)
-.+|+++|.+.|+||+ ++|.+|+.++|.++.+..+. +||+.--.+.|-.|...+..- -++|+..
T Consensus 68 ~r~laalvaSkvyy~L--g~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~ 145 (963)
T 4ady_A 68 DREMAALIASKVYYNL--GEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLT 145 (963)
T ss_dssp THHHHHHHHHHHHHHH--TCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHH
T ss_pred HHHHHHHHHHHHHEEC--CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 6889999998883023--66689999998579867888853579999999999999998630355432223345688999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHC--CH--HHHHHHHHHHH--H---------HHCCCC---CC-
Q ss_conf 899999999971289999999999479947899999851--61--67789999998--7---------410111---23-
Q 002696 240 LVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSC--DD--LLRKKQFCYIL--A---------RHGITL---EL- 300 (891)
Q Consensus 240 ~il~~l~~iy~k~~~~~~al~~ai~l~d~~~i~~il~~~--~d--~~~~~Qlaf~L--a---------rq~~~~---~~- 300 (891)
.+.+.++..|++.+.|.+|+.++++..+.|.+++++.++ ++ .....-+.|.+ + |.+++. ++
T Consensus 146 ~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy 225 (963)
T 4ady_A 146 SIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFL 225 (963)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999998489899887899998239999999985312445466899999999985236998478999999999999
Q ss_pred CCCCCCC----------CCCHHHHHHHHCCC----C--------------CCHHHHH-----------HHHHHHCCCCCC
Q ss_conf 4789999----------63079999987054----7--------------5245887-----------888841169999
Q 002696 301 DDDMVPD----------DDDRYALQDIVNNV----K--------------LSEGYLT-----------LARDIEVMEPKS 341 (891)
Q Consensus 301 ~~~~~~~----------~~~~~~l~~il~n~----~--------------l~~~fl~-----------l~k~l~i~~~k~ 341 (891)
...+.++ -++.+.+.+++... . -+..|+. +.+.++|++++.
T Consensus 226 ~k~~~~dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~ILsg~~ 305 (963)
T 4ady_A 226 MNMPNCDYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNILSGLP 305 (963)
T ss_dssp HHSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHHTTSHH
T ss_pred HHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCC
T ss_conf 80781239999999997599889999999877264388899999997102136799999874333300689999867997
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 47899841105888766323779886999999999760258764334578899898877533345614478999870012
Q 002696 342 PEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMI 421 (891)
Q Consensus 342 ~e~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~sA~aslGlI 421 (891)
+.++|++||..++.++...++..+.++.. | + .-.-..++.+.|++
T Consensus 306 ~~~Lyl~FL~~~n~~d~~~l~~~K~~ld~-----------------r-----------------~-s~~~~A~~f~Naf~ 350 (963)
T 4ady_A 306 TCDYYNTFLLNNKNIDIGLLNKSKSSLDG-----------------K-----------------F-SLFHTAVSVANGFM 350 (963)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHSCT-----------------T-----------------S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCC-----------------H-----------------H-HHHHHHHHHHHHHH
T ss_conf 38999999986565430008899863032-----------------1-----------------4-67879999988887
Q ss_pred CCCCCHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 04661025-9868542038990368999999977516988991359999985208---9887999999999989852598
Q 002696 422 LLWDVDSG-LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG---REDACIRIGAIMGLGISYAGTQ 497 (891)
Q Consensus 422 ~~~~~~~~-l~~l~~yL~s~~~~ik~GAllaLGli~~g~~~e~d~~l~lL~~~L~---~~~~~v~~gA~lGLGlay~Gs~ 497 (891)
|.|...+. +..-.+|+++..+|.+.||+++||+||.|+.++ .+.+|.+||. +.++.+++||++|||++++|++
T Consensus 351 naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~---gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~ 427 (963)
T 4ady_A 351 HAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLE---GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG 427 (963)
T ss_dssp TTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTT---HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT
T ss_pred HCCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 278775424320305440464089999998700100385488---99999986245679719999999999898628971
Q ss_pred CHHHHHHHHHHHCCCC-C-----CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 8779999998713899-8-----068888999996544227999999999999996048433484147777889886424
Q 002696 498 NDQIRHKLSTILNDAK-S-----PLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYL 571 (891)
Q Consensus 498 ~e~i~e~L~~~L~d~~-~-----~~e~~~~AaLaLGLi~lGs~n~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~l 571 (891)
+ ++.++|.+.+.+++ + ...+.++|++|||++|+||+++++++.|++.+.+. +.
T Consensus 428 ~-~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd------~~-------------- 486 (963)
T 4ady_A 428 R-DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND------SA-------------- 486 (963)
T ss_dssp H-HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC------CH--------------
T ss_pred H-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC------CH--------------
T ss_conf 7-99999999870766333456548999999999899866789889999999999567------78--------------
Q ss_pred CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 89224999999974101323435568999988724787999999995300157889522127787867763023122879
Q 002696 572 GKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM 651 (891)
Q Consensus 572 G~~e~~~~~l~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avl~lglI~~~~~~g~e~ 651 (891)
+.++++++++|+.|+||||..+++.||+++.++.++ ++||++++|||++.+|++ +.
T Consensus 487 -------------------~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e--~vrR~aalgLGll~~g~~---e~ 542 (963)
T 4ady_A 487 -------------------TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG--NITRGLAVGLALINYGRQ---EL 542 (963)
T ss_dssp -------------------HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTCG---GG
T ss_pred -------------------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHCCCH---HH
T ss_conf -------------------789999999763512568899999999998625848--999999999875507986---77
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999620994688489999631126898277999-99874229845899999999998707999068999999865
Q 002696 652 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMD-TLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLS 730 (891)
Q Consensus 652 ~~~~l~~L~~~~~~~VR~gv~lALGl~~agt~~~~vid-~L~~l~~D~d~~Vr~~AiiALGlV~agtnn~ri~~~lr~l~ 730 (891)
++.+++.|..+.+|++|+++++|+|++||||||..+|+ +|..+..|.+++||++|++|+|+|++|..+ .+..+++.|.
T Consensus 543 ~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e-~v~rlv~~L~ 621 (963)
T 4ady_A 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT-TVPRIVQLLS 621 (963)
T ss_dssp GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS-SHHHHTTTGG
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHH
T ss_conf 999999997178788879999999998617898999999998724487479999999998752069877-7999999998
Q ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCE----EECCCCCCC-CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 220147256999999976553089930----003457899-988867999999999862033
Q 002696 731 SYYYKDANLLFCVRIAQGLVHMGKGLL----TLNPYHSDR-FLLSPTALAGIVTTLFACLDM 787 (891)
Q Consensus 731 ~~~~~d~~~~f~~~lAqGll~~G~G~~----tls~~~sd~-~~~~~~a~agLl~~l~~~~d~ 787 (891)
. +.|+++|+++.+|+|++++|.|+. +|+++.+|. ..+++.|+.+|-.+....-+.
T Consensus 622 ~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 622 K--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp G--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred H--CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6--69888999899999875469985799999999806997899999999999982578643
No 3
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=1.00 E-value=1 Score=82.01 Aligned_cols=223 Identities=12% Similarity=0.098 Sum_probs=115.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHH
Q ss_conf 5986854203899036899999997751698899135999998520898879999999999898525988-779999998
Q 002696 429 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQIRHKLST 507 (891)
Q Consensus 429 ~l~~l~~yL~s~~~~ik~GAllaLGli~~g~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~-e~i~e~L~~ 507 (891)
++..+-..|.+++..+|..|+.+||-+.. ..++..|...+.+++..+|..|+.+||-....... ..+...|..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~ 97 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNN 97 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCC------CHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 07999999982897999999999871588------049999999874998999999999999854353131689999999
Q ss_pred H-HCCCCCCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 7-13899806888899999654422799--99999999999960484334841477778898864248922499999997
Q 002696 508 I-LNDAKSPLDVIAFSAISLGLIYVGSC--NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVS 584 (891)
Q Consensus 508 ~-L~d~~~~~e~~~~AaLaLGLi~lGs~--n~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~l~~L 584 (891)
. +.|+ +.++...++.+||.+..+.. ..++.+.++..+. . .++.+|..+ ..+|..+|..+
T Consensus 98 ~~~~d~--~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~----d--~~~~vR~~a-~~aL~~~~~~~--------- 159 (280)
T 1oyz_A 98 MALNDK--SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF----D--KSTNVRRAT-AFAISVINDKA--------- 159 (280)
T ss_dssp HHHHCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT----C--SCHHHHHHH-HHHHHTC---C---------
T ss_pred HHHCCC--CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH----C--CCHHHHHHH-HHHHHHCCCHH---------
T ss_conf 875499--89999999999998703477133999999999961----9--999999999-99987338787---------
Q ss_pred HHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 41013234355689999887247879999999953001578895221277878677630231228799999999962099
Q 002696 585 KTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGE 664 (891)
Q Consensus 585 ~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vrr~avl~lglI~~~~~~g~e~~~~~l~~L~~~~~ 664 (891)
++..|+.... +.+ ..||..|+.++|.+....+ +.++ .+..++.+.+
T Consensus 160 ---------------------------~~~~L~~~l~-d~~--~~vr~~a~~aL~~~~~~~~---~~~~-~L~~~l~d~~ 205 (280)
T 1oyz_A 160 ---------------------------TIPLLINLLK-DPN--GDVRNWAAFAININKYDNS---DIRD-CFVEMLQDKN 205 (280)
T ss_dssp ---------------------------CHHHHHHHHT-CSS--HHHHHHHHHHHHHHTCCCH---HHHH-HHHHHTTCSC
T ss_pred ---------------------------HHHHHHHHHC-CCC--HHHHHHHHHHHHHHCCCCH---HHHH-HHHHHHCCCC
T ss_conf ---------------------------8999999874-998--8999999999986253769---9999-9999834999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 468848999963112689827799999874229845899999999998707
Q 002696 665 QNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 715 (891)
Q Consensus 665 ~~VR~gv~lALGl~~agt~~~~vid~L~~l~~D~d~~Vr~~AiiALGlV~a 715 (891)
+.||..++.+||-+ ++..++..|..+..|++ ||..|+.|+|-++.
T Consensus 206 ~~vR~~A~~aL~~~----~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 206 EEVRIEAIIGLSYR----KDKRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHHHHHHHHT----TCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHH----CCHHHHHHHHHHHCCCC--HHHHHHHHHHHCCC
T ss_conf 89999999999983----88736999999852763--99999999985596
No 4
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=1.00 E-value=1 Score=79.63 Aligned_cols=223 Identities=13% Similarity=0.109 Sum_probs=118.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999852089887999999999989852598877999999871389980688889999965442279999999999999
Q 002696 466 ALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFA 545 (891)
Q Consensus 466 ~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~e~i~e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~e~~e~ll~~ 545 (891)
.+..|...|.+++..+|..|+..||-.. .+++...|...+.|+ +..+...|+.+||.+..... ....++..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~----~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~~~~---~~~~l~~~ 94 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKK---CEDNVFNI 94 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTT---THHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCC----CCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCCC---CCHHHHHH
T ss_conf 0799999998289799999999987158----804999999987499--89999999999998543531---31689999
Q ss_pred HHHCCCCCCCCHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 9604843348414777-788988642489224999999974101323435568999988724787999999995300157
Q 002696 546 LMDRSESELGEPLTRL-IPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHH 624 (891)
Q Consensus 546 L~~~~~~~l~e~~~r~-~~lglgLl~lG~~e~~~~~l~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~ 624 (891)
|......+ .++.+|. ++.++|- +|..+ + ......+..|+.... +.
T Consensus 95 L~~~~~~d-~~~~vr~~a~~aL~~--l~~~~--------------~----------------~~~~~~~~~L~~~l~-d~ 140 (280)
T 1oyz_A 95 LNNMALND-KSACVRATAIESTAQ--RCKKN--------------P----------------IYSPKIVEQSQITAF-DK 140 (280)
T ss_dssp HHHHHHHC-SCHHHHHHHHHHHHH--HHHHC--------------G----------------GGHHHHHHHHHHHTT-CS
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHH--HHCCC--------------C----------------CCCHHHHHHHHHHHH-CC
T ss_conf 99987549-989999999999998--70347--------------7----------------133999999999961-99
Q ss_pred CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 88952212778786776302312287999999999620994688489999631126898277999998742298458999
Q 002696 625 EKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAM 704 (891)
Q Consensus 625 ~d~~~vrr~avl~lglI~~~~~~g~e~~~~~l~~L~~~~~~~VR~gv~lALGl~~agt~~~~vid~L~~l~~D~d~~Vr~ 704 (891)
+ +.+|..|+.++|-+. ++ +.++.++. ++.+.++.||+.++.+||.+ |.....+++.|..+.+|.+..||.
T Consensus 141 ~--~~vR~~a~~aL~~~~--~~---~~~~~L~~-~l~d~~~~vr~~a~~aL~~~--~~~~~~~~~~L~~~l~d~~~~vR~ 210 (280)
T 1oyz_A 141 S--TNVRRATAFAISVIN--DK---ATIPLLIN-LLKDPNGDVRNWAAFAININ--KYDNSDIRDCFVEMLQDKNEEVRI 210 (280)
T ss_dssp C--HHHHHHHHHHHHTC--------CCHHHHHH-HHTCSSHHHHHHHHHHHHHH--TCCCHHHHHHHHHHTTCSCHHHHH
T ss_pred C--HHHHHHHHHHHHHCC--CH---HHHHHHHH-HHCCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 9--999999999987338--78---78999999-87499889999999999862--537699999999983499989999
Q ss_pred HHHHHHHHHCCCCCCHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999870799906899-999986522014725699999997655
Q 002696 705 AAVISLGLIGSGTNNARIA-GMLRNLSSYYYKDANLLFCVRIAQGLV 750 (891)
Q Consensus 705 ~AiiALGlV~agtnn~ri~-~~lr~l~~~~~~d~~~~f~~~lAqGll 750 (891)
.|+.++|-++ +++.. .+++.+ +++..+..+..|.|-+
T Consensus 211 ~A~~aL~~~~----~~~~~~~L~~~l-----~d~~vr~~a~~aL~~i 248 (280)
T 1oyz_A 211 EAIIGLSYRK----DKRVLSVLCDEL-----KKNTVYDDIIEAAGEL 248 (280)
T ss_dssp HHHHHHHHTT----CGGGHHHHHHHH-----TSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHC----CHHHHHHHHHHH-----CCCCHHHHHHHHHHHC
T ss_conf 9999999838----873699999985-----2763999999999855
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=76.92 Aligned_cols=298 Identities=14% Similarity=0.074 Sum_probs=128.0
Q ss_pred HHHHHHHHHCCCCCCC-----CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHCCCCC
Q ss_conf 4789998700120466-----1025986854203899036899999997751698899------1359999985208988
Q 002696 410 GKMSAAASLGMILLWD-----VDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND------CDPALALLSEYVGRED 478 (891)
Q Consensus 410 ~k~sA~aslGlI~~~~-----~~~~l~~l~~yL~s~~~~ik~GAllaLGli~~g~~~e------~d~~l~lL~~~L~~~~ 478 (891)
.|..++.++|.+...- ....+..+...+.+++..+|..|..++|-+......+ .+.++..+...+.+++
T Consensus 258 vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~ 337 (588)
T 1b3u_A 258 VRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN 337 (588)
T ss_dssp HHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999819521055899999998589958999999987999999727444365799999999999861998
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 799999999998985259887799----9999871389980688889999965442279999999999999960484334
Q 002696 479 ACIRIGAIMGLGISYAGTQNDQIR----HKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESEL 554 (891)
Q Consensus 479 ~~v~~gA~lGLGlay~Gs~~e~i~----e~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~e~~e~ll~~L~~~~~~~l 554 (891)
..+|..++.+||-.....+.+... ..+...+.|. ..++...+.-++|.+.-..+.....+.++..+......
T Consensus 338 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d-- 413 (588)
T 1b3u_A 338 QHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE--CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED-- 413 (588)
T ss_dssp HHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCS--CHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC--
T ss_conf 89999999999999888627678888999999983798--36899999998999997549898988889999998359--
Q ss_pred CCHHHHHHH-HHHHHHH--CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 841477778-8988642--4892249999999741013234355689999887247879999999953001578895221
Q 002696 555 GEPLTRLIP-LGLGLLY--LGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQ 631 (891)
Q Consensus 555 ~e~~~r~~~-lglgLl~--lG~~e~~~~~l~~L~~~~~p~~r~~~~~~~glAyaGTGn~~~iq~LL~~~~~~~~d~~~vr 631 (891)
.+..+|..+ -.++.+. +|.... ....+..++.... +.+ ..||
T Consensus 414 ~~~~vr~~~~~~l~~l~~~~~~~~~--------------------------------~~~l~~~l~~~l~-d~~--~~Vr 458 (588)
T 1b3u_A 414 AKWRVRLAIIEYMPLLAGQLGVEFF--------------------------------DEKLNSLCMAWLV-DHV--YAIR 458 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCGGGC--------------------------------CHHHHHHHHHGGG-CSS--HHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCHHHH--------------------------------HHHHHHHHHHHHC-CCC--HHHH
T ss_conf 9813999999999999988098989--------------------------------9999999998825-981--9999
Q ss_pred HHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHCCCCHHHHHH
Q ss_conf 2778786776302--3122879999999996209946884899996311268982----779999987422984589999
Q 002696 632 GPAVLGIAMVAMA--EELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK----VNVMDTLSRLSHDTDSEVAMA 705 (891)
Q Consensus 632 r~avl~lglI~~~--~~~g~e~~~~~l~~L~~~~~~~VR~gv~lALGl~~agt~~----~~vid~L~~l~~D~d~~Vr~~ 705 (891)
..|+.+++-+.-. .+.-.+.+...+..+..+.++.+|..++.++|-++..-+. ..++..|.++.+|++..||.+
T Consensus 459 ~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~ 538 (588)
T 1b3u_A 459 EAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538 (588)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999996844578889999999831898799999999999999766989999999999986678998627999
Q ss_pred HHHHHHHHCCCCCC----HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999987079990----68999999865220147256999999976
Q 002696 706 AVISLGLIGSGTNN----ARIAGMLRNLSSYYYKDANLLFCVRIAQG 748 (891)
Q Consensus 706 AiiALGlV~agtnn----~ri~~~lr~l~~~~~~d~~~~f~~~lAqG 748 (891)
++-++|-+...-+. ..+...+..+.. ..|+.++..+.-|.+
T Consensus 539 a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~--d~d~~vr~~a~~al~ 583 (588)
T 1b3u_A 539 VAKSLQKIGPILDNSTLQSEVKPILEKLTQ--DQDVDVKYFAQEALT 583 (588)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHH
T ss_conf 999999999986536459999999998747--996669999999999
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=75.62 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=61.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99999999937999346999999999998121466656897652012019999998710999702899999999976514
Q 002696 46 QQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTM 125 (891)
Q Consensus 46 ~~l~~~v~~l~e~d~~l~~~AL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~ 125 (891)
..+..++..|..+|++++..|...|.+........ +-++.+.|.+ .+.-+ .+++.|..++..+..+.-..
T Consensus 10 ~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~-----~~~~~l~~~L---~~~~d--~~~~vr~~~~~~L~~~~~~~ 79 (588)
T 1b3u_A 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVE-----RTRSELLPFL---TDTIY--DEDEVLLALAEQLGTFTTLV 79 (588)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-----HHHHTHHHHH---HHTCC--CCHHHHHHHHHHHTTCSGGG
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHH---HHHCC--CCHHHHHHHHHHHHHHHHCC
T ss_conf 74999999850621999999997199999986979-----8999899889---87557--85899999999997787605
Q ss_pred CCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 676630003565307988989862379999999999999985
Q 002696 126 SAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKR 167 (891)
Q Consensus 126 ~~~~~~~~L~y~L~~~~~d~~~wgheYvr~L~~ei~~~y~~~ 167 (891)
....+...+--.|..-. .+ ..+.||..+.++.......
T Consensus 80 ~~~~~~~~ll~~L~~l~---~~-~~~~vR~~a~~~L~~l~~~ 117 (588)
T 1b3u_A 80 GGPEYVHCLLPPLESLA---TV-EETVVRDKAVESLRAISHE 117 (588)
T ss_dssp TSGGGGGGGHHHHHHHT---TS-SCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHH---HC-CHHHHHHHHHHHHHHHHHH
T ss_conf 85989999899999987---47-6079999999999999997
No 7
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=1.00 E-value=1 Score=72.25 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 22127787867763023122879999999996209946884899996311268982779999987422984589999999
Q 002696 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVI 708 (891)
Q Consensus 629 ~vrr~avl~lglI~~~~~~g~e~~~~~l~~L~~~~~~~VR~gv~lALGl~~agt~~~~vid~L~~l~~D~d~~Vr~~Aii 708 (891)
.||..|+.++|-+ +++ +.++.+. .++.+.++.||..+..+||-+ +...+++.|..+.+|.+..||..|+-
T Consensus 127 ~vr~~a~~aL~~~--~~~---~~~~~L~-~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~ 196 (211)
T 3ltm_A 127 FVRIAAAFALGEI--GDE---RAVEPLI-KALKDEDGWVRQSAADALGEI----GGERVRAAMEKLAETGTGFARKVAVN 196 (211)
T ss_dssp HHHHHHHHHHHHH--CCG---GGHHHHH-HHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCH---HHHHHHH-HHHCCCCHHHHHHHHHHHHHH----CCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999871--987---7999999-987599899999999999872----96658999999985998899999999
Q ss_pred HHHHHCCCCCC
Q ss_conf 99987079990
Q 002696 709 SLGLIGSGTNN 719 (891)
Q Consensus 709 ALGlV~agtnn 719 (891)
+|+-+.-..++
T Consensus 197 aL~~~~~~~~~ 207 (211)
T 3ltm_A 197 YLETHKSFNHH 207 (211)
T ss_dssp HHHC-------
T ss_pred HHHHCCCCCCC
T ss_conf 99852788888
No 8
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=1.00 E-value=1 Score=69.42 Aligned_cols=76 Identities=17% Similarity=0.129 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 22127787867763023122879999999996209946884899996311268982779999987422984589999999
Q 002696 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVI 708 (891)
Q Consensus 629 ~vrr~avl~lglI~~~~~~g~e~~~~~l~~L~~~~~~~VR~gv~lALGl~~agt~~~~vid~L~~l~~D~d~~Vr~~Aii 708 (891)
.||..|+.++|-+. ++ +.++. +..++.+.++.||..+..|||-+ +..+++..|..+..|.+..||..|+.
T Consensus 122 ~vr~~a~~aL~~~~--~~---~~~~~-L~~~l~d~~~~vr~~A~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~ 191 (201)
T 3ltj_A 122 FVRIAAAFALGEIG--DE---RAVEP-LIKALKDEDGWVRQSAADALGEI----GGERVRAAMEKLAETGTGFARKVAVN 191 (201)
T ss_dssp HHHHHHHHHHHHHT--CG---GGHHH-HHHHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CH---HHHHH-HHHHHCCCCHHHHHHHHHHHHHH----CCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999858--87---89999-99997599889999999999986----86468999999883898789999999
Q ss_pred HHHHHC
Q ss_conf 999870
Q 002696 709 SLGLIG 714 (891)
Q Consensus 709 ALGlV~ 714 (891)
+++-+.
T Consensus 192 aL~~l~ 197 (201)
T 3ltj_A 192 YLETHK 197 (201)
T ss_dssp HHHHCC
T ss_pred HHHHHH
T ss_conf 999877
No 9
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=1.00 E-value=1 Score=67.08 Aligned_cols=49 Identities=27% Similarity=0.287 Sum_probs=24.0
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 20994688489999631126898277999998742298458999999999987
Q 002696 661 QYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI 713 (891)
Q Consensus 661 ~~~~~~VR~gv~lALGl~~agt~~~~vid~L~~l~~D~d~~Vr~~AiiALGlV 713 (891)
.+.++.||..++.+||-+ +..++++.|.++.+|++..||..|+.+||-+
T Consensus 122 ~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 122 KDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp TCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 398999999999999871----9877999999987599899999999999872
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=66.37 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=52.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99999999937999346999999999998121466656897652012019999998710999702899999999976514
Q 002696 46 QQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTM 125 (891)
Q Consensus 46 ~~l~~~v~~l~e~d~~l~~~AL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~ 125 (891)
.|++-+-+.|+.+|...+..++.+|....-.-. +..++ +..+.++..+. +.+.|++....++.++-.
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~--------d~~~~---~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~- 79 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVGK--------DVSSL---FPDVVNCMQTD-NLELKKLVYLYLMNYAKS- 79 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTC--------CCGGG---HHHHHHTTSSS-CHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC--------CHHHH---HHHHHHHHCCC-CHHHHHHHHHHHHHHCCC-
T ss_conf 709999998739987999999999999998799--------86889---99999881799-899999999999998665-
Q ss_pred CCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6766300035653079889898623799999999999
Q 002696 126 SAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQ 162 (891)
Q Consensus 126 ~~~~~~~~L~y~L~~~~~d~~~wgheYvr~L~~ei~~ 162 (891)
..|-+......=..|+.+. ++++|.++....-
T Consensus 80 ----~~e~~~l~~n~l~kdL~~~-n~~ir~~AL~~L~ 111 (591)
T 2vgl_B 80 ----QPDMAIMAVNSFVKDCEDP-NPLIRALAVRTMG 111 (591)
T ss_dssp ----SHHHHHTTHHHHGGGSSSS-SHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHH
T ss_conf ----8068999999999776999-9999999999987
Done!