BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002697
(891 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/900 (41%), Positives = 553/900 (61%), Gaps = 34/900 (3%)
Query: 7 WQPQEQGFNEICRLLEQQISPSSTADKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVE 66
W+P EQG +I +LL++ SP +T ++ +PDFNNYL F+L + + +
Sbjct: 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEP 63
Query: 67 IRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126
R +GL+LKNN++ +++ +IKSE L +G + IR+TVG +++ + G +
Sbjct: 64 TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL 123
Query: 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186
W +LL L + LDS D N EGA AL KICED ++LDSDV + P+NI +P+ L
Sbjct: 124 QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV---LDRPLNIMIPKFL 180
Query: 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246
QFF+ +R ++ VNQFI+ AL + +D +++ LF L+ D EVRK VC A
Sbjct: 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV 240
Query: 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306
+L+EVR L PH+ N+ EYMLQ +D D++VALEACEFW + E + + L LP+L
Sbjct: 241 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 300
Query: 307 VPVLLSNMIYADDDESLVEA--EEDESLPDRDQDLKPRFHSSRLHGSEN----------- 353
+PVL++ M Y+D D L++ EEDE++PD +QD++PRFH SR ++
Sbjct: 301 IPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDD 360
Query: 354 -PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAA 412
E DDDD ++ WNLRKCSAAALDVL+NV+ DE+LP ++P+++ L W +E+
Sbjct: 361 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESG 417
Query: 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472
+L LGAIAEGC++G+ P+L E++ LI L DK L+RSI+CWTLSR++ ++V Q
Sbjct: 418 ILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS----QP 473
Query: 473 GREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKY 532
+ ++ LLKRILD+NKRVQEAACS IL L+ AF KY
Sbjct: 474 PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 533
Query: 533 QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSI 592
Q +NL I+YDAIGTLAD+VG LN+P Y+ +LMPPLI KW L + DKDLFPLLEC +S+
Sbjct: 534 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSV 593
Query: 593 AQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQY---DKEFVVCCXXXXXXXXX 649
A AL +GF + +PV+QRC+N++Q + + A QY DK+F++
Sbjct: 594 ATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAE 653
Query: 650 XXXXXXXXXVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIA 709
VA+SN+ ++ QC D +VRQS+FALLGDL + C H++ ++DF+ I
Sbjct: 654 GLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 713
Query: 710 AKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLI 769
LN E +SV NNA WAIGE++++ E+ P + V+ LV I+ K+L+
Sbjct: 714 GTNLN----PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT-PKTLL 768
Query: 770 ENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGA 829
EN+AIT+GRL +VCP+ V+P ++ F++PWC +L IRD+ EK+ AFRG+C M+ NPSG
Sbjct: 769 ENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV 828
Query: 830 LSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 889
+ +F C A+ASW + ++L + C++LHG+K + + W + P+K++L+ +
Sbjct: 829 IQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 887
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/888 (41%), Positives = 541/888 (60%), Gaps = 35/888 (3%)
Query: 7 WQPQEQGFNEICRLLEQQISPSSTADKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVE 66
W+P EQG +I +LL++ SP +T ++ +PDFNNYL F+L + + +
Sbjct: 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEP 63
Query: 67 IRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126
R +GL+LKNN++ +++ +IKSE L +G + IR+TVG +++ + G +
Sbjct: 64 TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL 123
Query: 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186
W +LL L + LDS D N EGA AL KICED ++LDSDV + P+NI +P+ L
Sbjct: 124 QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV---LDRPLNIMIPKFL 180
Query: 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246
QFF+ +R ++ VNQFI+ AL + +D +++ LF L+ D EVRK VC A
Sbjct: 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV 240
Query: 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306
+L+EVR L PH+ N+ EYMLQ +D D++VALEACEFW + E + + L LP+L
Sbjct: 241 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 300
Query: 307 VPVLLSNMIYADDDESLVEA--EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364
+PVL++ M Y+D D L++ EEDE++PD +QD+ S D ++
Sbjct: 301 IPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIGGSGGSG-------------DTISD 347
Query: 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424
WNLRKCSAAALDVL+NV+ DE+LP ++P+++ L W +E+ +L LGAIAEGC+
Sbjct: 348 WNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESGILVLGAIAEGCM 404
Query: 425 KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484
+G+ P+L E++ LI L DK L+RSI+CWTLSR++ ++V Q + ++ L
Sbjct: 405 QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS----QPPDTYLKPLMTEL 460
Query: 485 LKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAI 544
LKRILD+NKRVQEAACS IL L+ AF KYQ +NL I+YDAI
Sbjct: 461 LKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAI 520
Query: 545 GTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFA 604
GTLAD+VG LN+P Y+ +LMPPLI KW L + DKDLFPLLEC +S+A AL +GF +
Sbjct: 521 GTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYC 580
Query: 605 QPVFQRCINIIQTQQLAKVDSVAAGAQY---DKEFVVCCXXXXXXXXXXXXXXXXXXVAQ 661
+PV+QRC+N++Q + + A QY DK+F++ VA+
Sbjct: 581 EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVAR 640
Query: 662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKET 721
SN+ ++ QC D +VRQS+FALLGDL + C H++ ++DF+ I LN E
Sbjct: 641 SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN----PEF 696
Query: 722 VSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW 781
+SV NNA WAIGE++++ E+ P + V+ LV I+ K+L+EN+AIT+GRL +
Sbjct: 697 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT-PKTLLENTAITIGRLGY 755
Query: 782 VCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIA 841
VCP+ V+P ++ F++PWC +L IRD+ EK+ AFRG+C M+ NPSG + +F C A+A
Sbjct: 756 VCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVA 815
Query: 842 SWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 889
SW + ++L + C++LHG+K + + W + P+K++L+ +
Sbjct: 816 SWINPK-DDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 862
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/900 (40%), Positives = 536/900 (59%), Gaps = 34/900 (3%)
Query: 7 WQPQEQGFNEICRLLEQQISPSSTADKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVE 66
W+P EQG +I +LL++ SP +T ++ +PDFNNYL F+L + + +
Sbjct: 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEP 63
Query: 67 IRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126
R +GL+LKNN++ +++ +IKSE L +G + IR+TVG +++ + G +
Sbjct: 64 TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL 123
Query: 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186
W +LL L + LDS D N EGA AL KICED ++LDSDV + P+NI +P+ L
Sbjct: 124 QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV---LDRPLNIXIPKFL 180
Query: 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246
QFF+ +R ++ VNQFI+ AL + +D + + LF L+ D EVRK VC A
Sbjct: 181 QFFKHSSPKIRSHAVACVNQFIISRTQALXLHIDSFTENLFALAGDEEPEVRKNVCRALV 240
Query: 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306
L+EVR L PH N+ EY LQ +D D++VALEACEFW + E + + L LP+L
Sbjct: 241 XLLEVRMDRLLPHXHNIVEYXLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 300
Query: 307 VPVLLSNMIYADDDESLVEA--EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDD---- 360
+PVL++ Y+D D L++ EEDE++PD +QD++PRFH SR ++ ED ++
Sbjct: 301 IPVLVNGXKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDD 360
Query: 361 --------IVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAA 412
++ WNLRKCSAAALDVL+NV+ DE+LP ++P+++ L W +E+
Sbjct: 361 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESG 417
Query: 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472
+L LGAIAEGC +G P+L E++ LI L DK L+RSI+CWTLSR++ ++V Q
Sbjct: 418 ILVLGAIAEGCXQGXIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS----QP 473
Query: 473 GREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKY 532
+ + LLKRILD+NKRVQEAACS IL L+ AF KY
Sbjct: 474 PDTYLKPLXTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 533
Query: 533 QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSI 592
Q +NL I+YDAIGTLAD+VG LN+P Y+ L PPLI KW L + DKDLFPLLEC +S+
Sbjct: 534 QHKNLLILYDAIGTLADSVGHHLNKPEYIQXLXPPLIQKWNXLKDEDKDLFPLLECLSSV 593
Query: 593 AQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQY---DKEFVVCCXXXXXXXXX 649
A AL +GF + +PV+QRC+N++Q + A QY DK+F +
Sbjct: 594 ATALQSGFLPYCEPVYQRCVNLVQKTLAQAXLNNAQPDQYEAPDKDFXIVALDLLSGLAE 653
Query: 650 XXXXXXXXXVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIA 709
VA+SN+ + QC D +VRQS+FALLGDL + C H++ ++DF I
Sbjct: 654 GLGGNIEQLVARSNILTLXYQCXQDKXPEVRQSSFALLGDLTKACFQHVKPCIADFXPIL 713
Query: 710 AKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLI 769
LN E +SV NNA WAIGE++++ E P + V+ LV I+ K+L+
Sbjct: 714 GTNLN----PEFISVCNNATWAIGEISIQXGIEXQPYIPXVLHQLVEIINRPNT-PKTLL 768
Query: 770 ENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGA 829
EN+AIT+GRL +VCP+ V+P ++ F++PWC +L IRD+ EK+ AFRG+C + NPSG
Sbjct: 769 ENTAITIGRLGYVCPQEVAPXLQQFIRPWCTSLRNIRDNEEKDSAFRGICTXISVNPSGV 828
Query: 830 LSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 889
+ +F C A+ASW + ++L + C++LHG+K + + W + P+K++L+ +
Sbjct: 829 IQDFIFFCDAVASWINPK-DDLRDXFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 887
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/886 (40%), Positives = 529/886 (59%), Gaps = 44/886 (4%)
Query: 7 WQPQEQGFNEICRLLEQQISPSSTADKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVE 66
W+P EQG +I +LL++ SP +T ++ +PDFNNYL F+L + + +
Sbjct: 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEP 63
Query: 67 IRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126
R +GL+LKNN++ +++ +IKSE L +G + IR+TVG +++ + G +
Sbjct: 64 TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL 123
Query: 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186
W +LL L + LDS D N EGA AL KICED ++LDSDV + P+NI +P+ L
Sbjct: 124 QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV---LDRPLNIMIPKFL 180
Query: 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246
QFF+ +R ++ VNQFI+ AL + +D +++ LF L+ D EVRK VC A
Sbjct: 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV 240
Query: 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306
+L+EVR L PH+ N+ EYMLQ +D D++VALEACEFW + E + + L LP+L
Sbjct: 241 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 300
Query: 307 VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366
+PVL++ M Y+D D L L G DD ++ WN
Sbjct: 301 IPVLVNGMKYSDIDIIL------------------------LKGDVEGGSGGDDTISDWN 336
Query: 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG 426
LRKCSAAALDVL+NV+ DE+LP ++P+++ L W +E+ +L LGAIAEGC++G
Sbjct: 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESGILVLGAIAEGCMQG 393
Query: 427 LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK 486
+ P+L E++ LI L DK L+RSI+CWTLSR++ ++V Q + ++ LLK
Sbjct: 394 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS----QPPDTYLKPLMTELLK 449
Query: 487 RILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVYDAIGT 546
RILD+NKRVQEAACS IL L+ AF KYQ +NL I+YDAIGT
Sbjct: 450 RILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGT 509
Query: 547 LADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQP 606
LAD+VG LN+P Y+ +LMPPLI KW L + DKDLFPLLEC +S+A AL +GF + +P
Sbjct: 510 LADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEP 569
Query: 607 VFQRCINIIQTQQLAKVDSVAAGAQY---DKEFVVCCXXXXXXXXXXXXXXXXXXVAQSN 663
V+QRC+N++Q + + A QY DK+F++ VA+SN
Sbjct: 570 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSN 629
Query: 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVS 723
+ ++ QC D +VRQS+FALLGDL + C H++ ++DF+ I LN E +S
Sbjct: 630 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN----PEFIS 685
Query: 724 VANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVC 783
V NNA WAIGE++++ E+ P + V+ LV I+ K+L+EN+AIT+GRL +VC
Sbjct: 686 VCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT-PKTLLENTAITIGRLGYVC 744
Query: 784 PELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASW 843
P+ V+P ++ F++PWC +L IRD+ EK+ AFRG+C M+ NPSG + +F C A+ASW
Sbjct: 745 PQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASW 804
Query: 844 HEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 889
+ ++L + C++LHG+K + + W + P+K++L+ +
Sbjct: 805 INPK-DDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 849
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 113/488 (23%), Positives = 198/488 (40%), Gaps = 89/488 (18%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 60
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 120
Query: 124 GGIAGWLELLQALV-TCLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
++ W EL+ LV + N HM E ++A+ IC+DI P+ L N
Sbjct: 121 IPVSQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NE 172
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F++ +
Sbjct: 173 ILTAIIQGMRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 233 PSAEVRKLVCAAFNL--LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289
P VR V A NL ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 229 PDTRVR--VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW--- 283
Query: 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349
SN+ + D ++ +E E +P H+S+ +
Sbjct: 284 ----------------------SNVCDEEMDLAIEASEAAEQG-------RPPEHTSKFY 314
Query: 350 GSEN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397
+ D++D + WN K + L +LS D+I+P ++P I+
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEH 374
Query: 398 LSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWT 456
+ + W+ R+AAV+A G+I EG L P + + + LI L+ D ++R + WT
Sbjct: 375 IK---NPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKDPSVVVRDTTAWT 431
Query: 457 LSRFSKFI 464
+ R + +
Sbjct: 432 VGRICELL 439
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 113/488 (23%), Positives = 197/488 (40%), Gaps = 89/488 (18%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 60
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAE 120
Query: 124 GGIAGWLELLQALV-TCLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
+ W EL+ LV + N HM E ++A+ IC+DI P+ L N
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NE 172
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F++ +
Sbjct: 173 ILTAIIQGMRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 233 PSAEVRKLVCAAFNL--LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289
P VR V A NL ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 229 PDTRVR--VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW--- 283
Query: 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349
SN+ D+E + E E+ + +P H+S+ +
Sbjct: 284 ----------------------SNVC---DEEMDLAIEASEAA----EQGRPPEHTSKFY 314
Query: 350 GSEN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397
+ D++D + WN K + L +L+ D+I+P ++P I+
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 374
Query: 398 LSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWT 456
+ + W+ R+AAV+A G I EG L P + + + LI L+ D ++R + WT
Sbjct: 375 IK---NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431
Query: 457 LSRFSKFI 464
+ R + +
Sbjct: 432 VGRICELL 439
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 113/488 (23%), Positives = 197/488 (40%), Gaps = 89/488 (18%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 60
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 120
Query: 124 GGIAGWLELLQALV-TCLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
+ W EL+ LV + N HM E ++A+ IC+DI P+ L N
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NE 172
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F++ +
Sbjct: 173 ILTAIIQGMRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 233 PSAEVRKLVCAAFNL--LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289
P VR V A NL ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 229 PDTRVR--VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW--- 283
Query: 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349
SN+ D+E + E E+ + +P H+S+ +
Sbjct: 284 ----------------------SNVC---DEEMDLAIEASEAA----EQGRPPEHTSKFY 314
Query: 350 GSEN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397
+ D++D + WN K + L +L+ D+I+P ++P I+
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 374
Query: 398 LSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWT 456
+ + W+ R+AAV+A G I EG L P + + + LI L+ D ++R + WT
Sbjct: 375 IK---NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431
Query: 457 LSRFSKFI 464
+ R + +
Sbjct: 432 VGRICELL 439
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 112/488 (22%), Positives = 196/488 (40%), Gaps = 89/488 (18%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 60
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 120
Query: 124 GGIAGWLELLQALV-TCLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
+ W EL+ LV + N HM E ++A+ IC+DI P+ L N
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NE 172
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F++ +
Sbjct: 173 ILTAIIQGMRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 233 PSAEVRKLVCAAFNL--LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289
P VR V A NL ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 229 PDTRVR--VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW--- 283
Query: 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349
SN+ + D ++ +E E +P H+S+ +
Sbjct: 284 ----------------------SNVCDEEMDLAIEASEAAEQG-------RPPEHTSKFY 314
Query: 350 GSEN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397
+ D++D + WN K + L +L+ D+I+P ++P I+
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 374
Query: 398 LSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWT 456
+ + W+ R+AAV+A G I EG L P + + + LI L+ D ++R + WT
Sbjct: 375 IK---NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431
Query: 457 LSRFSKFI 464
+ R + +
Sbjct: 432 VGRICELL 439
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 112/488 (22%), Positives = 196/488 (40%), Gaps = 89/488 (18%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 60
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 120
Query: 124 GGIAGWLELLQALV-TCLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
+ W EL+ LV + N HM E ++A+ IC+DI P+ L N
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NE 172
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F++ +
Sbjct: 173 ILTAIIQGMRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 233 PSAEVRKLVCAAFNL--LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289
P VR V A NL ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 229 PDTRVR--VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW--- 283
Query: 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349
SN+ + D ++ +E E +P H+S+ +
Sbjct: 284 ----------------------SNVCDEEMDLAIEASEAAEQG-------RPPEHTSKFY 314
Query: 350 GSEN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397
+ D++D + WN K + L +L+ D+I+P ++P I+
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 374
Query: 398 LSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWT 456
+ + W+ R+AAV+A G I EG L P + + + LI L+ D ++R + WT
Sbjct: 375 IK---NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431
Query: 457 LSRFSKFI 464
+ R + +
Sbjct: 432 VGRICELL 439
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 112/488 (22%), Positives = 196/488 (40%), Gaps = 89/488 (18%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 60
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAE 120
Query: 124 GGIAGWLELLQALV-TCLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
+ W EL+ LV + N HM E ++A+ IC+DI P+ L N
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NE 172
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F++ +
Sbjct: 173 ILTAIIQGMRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 233 PSAEVRKLVCAAFNL--LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289
P VR V A NL ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 229 PDTRVR--VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW--- 283
Query: 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349
SN+ + D ++ +E E +P H+S+ +
Sbjct: 284 ----------------------SNVCDEEMDLAIEASEAAEQG-------RPPEHTSKFY 314
Query: 350 GSEN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397
+ D++D + WN K + L +L+ D+I+P ++P I+
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 374
Query: 398 LSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWT 456
+ + W+ R+AAV+A G I EG L P + + + LI L+ D ++R + WT
Sbjct: 375 IK---NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431
Query: 457 LSRFSKFI 464
+ R + +
Sbjct: 432 VGRICELL 439
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 111/489 (22%), Positives = 190/489 (38%), Gaps = 91/489 (18%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 8 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 66
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 67 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 126
Query: 124 GGIAGWLELLQALV-TCLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
++ W EL+ LV + N H E ++A+ IC+DI P+ L N
Sbjct: 127 IPVSQWPELIPQLVANVTNPNSTEHXKESTLEAIGYICQDIDPEQLQDKS--------NE 178
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F+ +
Sbjct: 179 ILTAIIQGXRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIXQVVCEATQC 234
Query: 233 PSAEVRKLVCAAFNLLIEVRP---SFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHS 288
P VR AA L+++ + E + LF ++ K D+VAL+ EFW
Sbjct: 235 PDTRVR---VAALQNLVKIXSLYYQYXETYXGPALFAITIEAXKSDIDEVALQGIEFW-- 289
Query: 289 YFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348
SN+ + D ++ +E E +P H+S+
Sbjct: 290 -----------------------SNVCDEEXDLAIEASEAAEQG-------RPPEHTSKF 319
Query: 349 HGSEN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQA 396
+ + D++D + WN K + L +LS D+I+P ++P I+
Sbjct: 320 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLXLLSTCCEDDIVPHVLPFIKE 379
Query: 397 KLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCW 455
+ + W+ R+AAV A G+I EG L P + + LI L D ++R + W
Sbjct: 380 HIK---NPDWRYRDAAVXAFGSILEGPEPNQLKPLVIQAXPTLIELXKDPSVVVRDTTAW 436
Query: 456 TLSRFSKFI 464
T+ R + +
Sbjct: 437 TVGRICELL 445
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 80/367 (21%), Positives = 155/367 (42%), Gaps = 69/367 (18%)
Query: 127 AGWLELLQALVTCLDSNDINHMEGA-MDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185
W EL++ +V + +++ A + AL +CE D L NI + +
Sbjct: 130 GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA----DPQSQALVSSSNNILIA-I 184
Query: 186 LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG-----LFLLSNDPSAEVRKL 240
+Q QS TS + + L ++N L S +F+ + +G + ++ AE ++
Sbjct: 185 VQGAQSTETS-KAVRLAALN---ALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 241 VCAAFNLLIEVRP---SFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHS-------- 288
AAF L ++ +F++P++ L+ + K +D VA EFW +
Sbjct: 241 QAAAFGCLCKIMSLYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300
Query: 289 -YFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSR 347
Y AQ P L+ + L + +D+ P +
Sbjct: 301 AYELAQFPQSPLQSYNFALSSI---------------------------KDVVPNLLNLL 333
Query: 348 LHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWK 407
+E+PEDDD WN+ + A L + + G+ IL ++ ++ ++A W+
Sbjct: 334 TRQNEDPEDDD------WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADN---WR 384
Query: 408 DREAAVLALGAIAEG---CIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464
+REAAV+A G+I +G + Y H + + ++ L++D+ ++ + W + R + +
Sbjct: 385 NREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADSV 442
Query: 465 VQDIGHQ 471
+ I Q
Sbjct: 443 AESIDPQ 449
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 80/367 (21%), Positives = 155/367 (42%), Gaps = 69/367 (18%)
Query: 127 AGWLELLQALVTCLDSNDINHMEGA-MDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185
W EL++ +V + +++ A + AL +CE D L NI + +
Sbjct: 130 GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA----DPQSQALVSSSNNILIA-I 184
Query: 186 LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG-----LFLLSNDPSAEVRKL 240
+Q QS TS + + L ++N L S +F+ + +G + ++ AE ++
Sbjct: 185 VQGAQSTETS-KAVRLAALN---ALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 241 VCAAFNLLIEVRP---SFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHS-------- 288
AAF L ++ +F++P++ L+ + K +D VA EFW +
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300
Query: 289 -YFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSR 347
Y AQ P L+ + L + +D+ P +
Sbjct: 301 AYELAQFPQSPLQSYNFALSSI---------------------------KDVVPNLLNLL 333
Query: 348 LHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWK 407
+E+PEDDD WN+ + A L + + G+ IL ++ ++ ++A W+
Sbjct: 334 TRQNEDPEDDD------WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADN---WR 384
Query: 408 DREAAVLALGAIAEG---CIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464
+REAAV+A G+I +G + Y H + + ++ L++D+ ++ + W + R + +
Sbjct: 385 NREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADSV 442
Query: 465 VQDIGHQ 471
+ I Q
Sbjct: 443 AESIDPQ 449
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 147/357 (41%), Gaps = 75/357 (21%)
Query: 134 QALVTCLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINIFLPRLLQFFQS 191
Q + + N HM E ++A+ IC+DI P+ L N L ++Q +
Sbjct: 7 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NEILTAIIQGMRK 58
Query: 192 PHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SNDPSAEVRKLVCA 243
S + L + N L+ S F + D+ + F++ + P VR V A
Sbjct: 59 EEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVR--VAA 112
Query: 244 AFNL--LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300
NL ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 113 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW-------------- 158
Query: 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSEN------- 353
SN+ + D ++ +E E +P H+S+ +
Sbjct: 159 -----------SNVCDEEMDLAIEASEAAEQG-------RPPEHTSKFYAKGALQYLVPI 200
Query: 354 -----PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKD 408
+ D++D + WN K + L +L+ D+I+P ++P I+ + + W+
Sbjct: 201 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK---NPDWRY 257
Query: 409 REAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464
R+AAV+A G I EG L P + + + LI L+ D ++R + WT+ R + +
Sbjct: 258 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 314
>pdb|1WVT|A Chain A, Crystal Structure Of Uncharacterized Protein St2180 From
Sulfolobus Tokodaii
pdb|1WVT|B Chain B, Crystal Structure Of Uncharacterized Protein St2180 From
Sulfolobus Tokodaii
pdb|1WVT|C Chain C, Crystal Structure Of Uncharacterized Protein St2180 From
Sulfolobus Tokodaii
Length = 172
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
Query: 404 EAWKDREAAVLALGAIAE-----GCIKGLYPHLSEIVAFLIPLLDDKFPLIRSIS 453
E WKD E V ALG + E G + LYP LSE++ L +D F + I+
Sbjct: 19 EVWKDSEI-VKALGDLDELNSVLGVVSSLYPELSEVIQ---KLQNDIFSISSEIA 69
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 202 GSVNQFIML-MPSALFVSMDQYL-----QGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPS 254
GSV++++ L + F++ Q L L+ L DP + K A+ LI+ P+
Sbjct: 8 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAY--LIDRDPT 65
Query: 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287
+ P L L L +NKD ++ LE EF++
Sbjct: 66 YFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYN 98
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|B Chain B, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|C Chain C, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|D Chain D, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|E Chain E, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
Length = 107
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287
L DP + K A+ LI+ P++ P L L L +NKD ++ LE EF++
Sbjct: 35 LCQADPDLDSDKDETGAY--LIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYN 92
Query: 288 SYFEAQLPHENLKE 301
+L + ++E
Sbjct: 93 ITSLIKLVKDKIRE 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,357,872
Number of Sequences: 62578
Number of extensions: 892826
Number of successful extensions: 2014
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1902
Number of HSP's gapped (non-prelim): 59
length of query: 891
length of database: 14,973,337
effective HSP length: 107
effective length of query: 784
effective length of database: 8,277,491
effective search space: 6489552944
effective search space used: 6489552944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)