Query 002697
Match_columns 891
No_of_seqs 376 out of 2981
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 05:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2023 Nuclear transport rece 100.0 1E-132 3E-137 1003.0 66.8 871 4-891 2-885 (885)
2 KOG2171 Karyopherin (importin) 100.0 5.1E-81 1.1E-85 676.4 77.2 818 15-890 4-1074(1075)
3 KOG1241 Karyopherin (importin) 100.0 5.9E-63 1.3E-67 508.3 65.2 739 16-829 2-817 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 5.8E-52 1.3E-56 412.2 63.0 737 16-827 5-813 (858)
5 KOG1991 Nuclear transport rece 100.0 7.2E-43 1.6E-47 372.0 68.2 772 14-842 3-869 (1010)
6 KOG1992 Nuclear export recepto 100.0 1.5E-38 3.3E-43 330.8 61.9 810 12-890 2-957 (960)
7 KOG2171 Karyopherin (importin) 100.0 8.6E-37 1.9E-41 332.8 64.6 732 62-886 15-853 (1075)
8 KOG2274 Predicted importin 9 [ 100.0 1E-34 2.3E-39 305.7 60.9 741 15-824 4-835 (1005)
9 KOG1993 Nuclear transport rece 100.0 2.5E-33 5.4E-38 290.6 58.3 809 17-889 2-974 (978)
10 KOG2023 Nuclear transport rece 100.0 3.5E-33 7.7E-38 283.8 51.6 682 27-807 60-839 (885)
11 COG5656 SXM1 Importin, protein 100.0 9.4E-30 2E-34 262.2 62.9 752 15-825 3-851 (970)
12 KOG1241 Karyopherin (importin) 100.0 6.1E-29 1.3E-33 257.8 59.1 741 62-871 12-818 (859)
13 KOG1824 TATA-binding protein-i 100.0 7.5E-29 1.6E-33 261.8 59.5 729 56-842 10-1055(1233)
14 COG5215 KAP95 Karyopherin (imp 100.0 5.2E-24 1.1E-28 213.6 59.4 639 62-786 105-814 (858)
15 KOG1824 TATA-binding protein-i 100.0 9.9E-21 2.1E-25 201.0 69.3 741 17-824 48-1096(1233)
16 KOG0213 Splicing factor 3b, su 99.9 9.4E-22 2E-26 203.0 54.5 663 7-739 355-1067(1172)
17 KOG2021 Nuclear mRNA export fa 99.9 1.1E-21 2.5E-26 203.2 50.8 641 15-713 3-785 (980)
18 COG5657 CSE1 CAS/CSE protein i 99.9 8.9E-21 1.9E-25 202.2 53.3 747 18-824 7-835 (947)
19 KOG2022 Nuclear transport rece 99.9 9.1E-16 2E-20 163.4 71.0 763 12-868 4-921 (982)
20 COG5181 HSH155 U2 snRNP splice 99.9 1E-17 2.2E-22 170.2 50.7 650 15-776 168-907 (975)
21 COG5101 CRM1 Importin beta-rel 99.9 1.3E-16 2.9E-21 162.6 56.2 523 14-573 13-672 (1053)
22 PLN03200 cellulose synthase-in 99.9 4.8E-17 1E-21 194.1 61.3 761 14-864 12-860 (2102)
23 KOG0213 Splicing factor 3b, su 99.9 1.2E-15 2.6E-20 158.5 61.3 646 105-878 453-1122(1172)
24 PLN03200 cellulose synthase-in 99.9 2.8E-17 6E-22 196.1 55.5 708 15-830 102-867 (2102)
25 KOG0915 Uncharacterized conser 99.8 6E-16 1.3E-20 173.5 49.0 524 223-840 820-1361(1702)
26 KOG0915 Uncharacterized conser 99.8 9.3E-16 2E-20 172.0 50.2 497 87-715 812-1367(1702)
27 KOG1242 Protein containing ada 99.8 2.5E-15 5.5E-20 156.0 38.8 522 103-729 27-556 (569)
28 KOG1992 Nuclear export recepto 99.8 4.2E-14 9.1E-19 149.6 46.0 507 15-598 87-672 (960)
29 KOG2081 Nuclear transport regu 99.8 8.1E-15 1.7E-19 149.9 38.6 461 34-552 2-539 (559)
30 KOG1248 Uncharacterized conser 99.8 7.8E-12 1.7E-16 138.8 63.7 752 26-886 106-917 (1176)
31 COG5181 HSH155 U2 snRNP splice 99.8 1.5E-14 3.2E-19 147.5 39.2 645 105-878 258-927 (975)
32 KOG1991 Nuclear transport rece 99.7 1.1E-11 2.4E-16 134.9 59.6 665 104-830 15-807 (1010)
33 KOG1242 Protein containing ada 99.7 2.1E-14 4.6E-19 149.2 36.7 514 190-804 27-546 (569)
34 KOG0212 Uncharacterized conser 99.7 3.7E-13 8.1E-18 136.6 37.3 410 32-509 16-445 (675)
35 PF01602 Adaptin_N: Adaptin N 99.7 3.8E-12 8.3E-17 144.3 47.7 508 15-689 7-521 (526)
36 PTZ00429 beta-adaptin; Provisi 99.7 7.2E-12 1.6E-16 140.2 46.6 425 17-516 70-515 (746)
37 KOG0212 Uncharacterized conser 99.7 2.4E-12 5.2E-17 130.8 38.3 409 97-574 4-426 (675)
38 PTZ00429 beta-adaptin; Provisi 99.7 6E-11 1.3E-15 132.9 53.5 431 23-552 40-474 (746)
39 PF08506 Cse1: Cse1; InterPro 99.6 4.2E-14 9.2E-19 145.9 23.2 274 198-503 58-370 (370)
40 PF01602 Adaptin_N: Adaptin N 99.6 1.4E-11 3.1E-16 139.6 43.7 471 17-590 44-520 (526)
41 KOG0166 Karyopherin (importin) 99.6 2E-13 4.4E-18 141.4 22.5 321 388-783 108-438 (514)
42 KOG1248 Uncharacterized conser 99.6 1.4E-08 3E-13 113.7 58.0 693 6-761 130-923 (1176)
43 KOG2274 Predicted importin 9 [ 99.5 2.6E-08 5.7E-13 107.9 57.1 688 54-830 7-787 (1005)
44 KOG0166 Karyopherin (importin) 99.5 1E-12 2.2E-17 136.3 22.6 358 133-552 68-439 (514)
45 KOG0211 Protein phosphatase 2A 99.5 6.6E-11 1.4E-15 130.8 37.7 529 104-739 131-666 (759)
46 PF03378 CAS_CSE1: CAS/CSE pro 99.4 2.6E-11 5.6E-16 128.1 25.3 381 472-889 19-435 (435)
47 PRK09687 putative lyase; Provi 99.4 1.1E-10 2.3E-15 116.9 23.8 253 133-505 25-279 (280)
48 KOG0211 Protein phosphatase 2A 99.4 3.5E-09 7.5E-14 117.4 36.7 574 129-817 80-658 (759)
49 PRK13800 putative oxidoreducta 99.4 1.9E-10 4.1E-15 136.0 28.5 273 96-505 624-896 (897)
50 KOG1943 Beta-tubulin folding c 99.4 1.2E-07 2.7E-12 105.0 46.9 512 89-693 337-882 (1133)
51 KOG2020 Nuclear transport rece 99.3 1E-06 2.3E-11 101.1 55.3 152 10-164 5-166 (1041)
52 PRK09687 putative lyase; Provi 99.3 3.8E-10 8.2E-15 113.0 24.4 252 182-545 25-278 (280)
53 PRK13800 putative oxidoreducta 99.3 3E-10 6.5E-15 134.2 27.6 273 133-545 623-895 (897)
54 PF10508 Proteasom_PSMB: Prote 99.3 1.8E-08 3.9E-13 110.8 38.0 397 98-550 43-463 (503)
55 KOG1060 Vesicle coat complex A 99.3 2.1E-08 4.5E-13 106.8 35.1 425 17-545 73-529 (968)
56 PF10508 Proteasom_PSMB: Prote 99.3 1.4E-08 3.1E-13 111.6 35.4 392 394-865 43-463 (503)
57 KOG0392 SNF2 family DNA-depend 99.3 2.8E-07 6.1E-12 103.3 43.5 222 62-292 88-326 (1549)
58 KOG1943 Beta-tubulin folding c 99.2 1.5E-05 3.2E-10 89.1 54.4 428 365-824 355-838 (1133)
59 COG5064 SRP1 Karyopherin (impo 99.2 1.9E-10 4.1E-15 109.7 14.0 352 134-550 74-444 (526)
60 KOG1060 Vesicle coat complex A 99.2 7.7E-07 1.7E-11 95.2 41.7 493 98-699 40-540 (968)
61 KOG1062 Vesicle coat complex A 99.2 6.3E-07 1.4E-11 96.4 40.0 468 109-685 85-574 (866)
62 COG5064 SRP1 Karyopherin (impo 99.2 2.9E-10 6.2E-15 108.5 12.2 317 392-739 74-400 (526)
63 KOG1061 Vesicle coat complex A 99.1 2E-07 4.3E-12 100.4 33.6 422 17-510 51-491 (734)
64 KOG1020 Sister chromatid cohes 99.1 0.00012 2.5E-09 84.9 55.3 141 95-249 818-959 (1692)
65 KOG1020 Sister chromatid cohes 99.1 0.00012 2.5E-09 84.9 52.8 149 125-289 810-958 (1692)
66 PF12755 Vac14_Fab1_bd: Vacuol 99.0 3.4E-09 7.3E-14 85.8 11.5 94 408-507 2-95 (97)
67 KOG1059 Vesicle coat complex A 99.0 2.7E-06 5.9E-11 90.2 35.5 190 86-292 137-366 (877)
68 PF03810 IBN_N: Importin-beta 99.0 3.2E-09 7E-14 84.0 8.7 67 36-103 1-76 (77)
69 KOG1240 Protein kinase contain 98.9 1.9E-07 4.2E-12 104.3 23.7 294 132-510 423-727 (1431)
70 KOG1062 Vesicle coat complex A 98.9 4.1E-05 8.8E-10 82.9 39.8 196 86-292 135-380 (866)
71 KOG4224 Armadillo repeat prote 98.9 4.8E-08 1E-12 94.6 16.3 338 367-738 101-447 (550)
72 COG5656 SXM1 Importin, protein 98.9 0.00019 4.1E-09 77.0 61.8 366 446-827 429-805 (970)
73 KOG1059 Vesicle coat complex A 98.9 9.9E-06 2.1E-10 86.2 34.1 262 126-508 139-401 (877)
74 KOG4224 Armadillo repeat prote 98.9 2.4E-07 5.3E-12 89.8 20.2 343 367-741 142-497 (550)
75 COG5240 SEC21 Vesicle coat com 98.9 4.6E-06 1E-10 86.1 30.1 442 9-507 59-554 (898)
76 COG5240 SEC21 Vesicle coat com 98.9 8.5E-05 1.8E-09 77.1 38.9 497 108-736 40-554 (898)
77 PF12460 MMS19_C: RNAPII trans 98.9 3.1E-06 6.7E-11 91.4 30.3 357 372-756 20-413 (415)
78 KOG1993 Nuclear transport rece 98.9 0.00031 6.8E-09 76.0 53.6 391 407-830 412-819 (978)
79 PF03378 CAS_CSE1: CAS/CSE pro 98.8 4.6E-07 1E-11 96.2 22.0 305 511-842 17-346 (435)
80 PF12460 MMS19_C: RNAPII trans 98.8 9.2E-06 2E-10 87.7 31.8 367 436-842 2-413 (415)
81 KOG1061 Vesicle coat complex A 98.8 3.5E-05 7.5E-10 83.6 33.7 426 32-554 29-458 (734)
82 PF12348 CLASP_N: CLASP N term 98.7 6.4E-07 1.4E-11 88.7 18.7 203 672-887 16-228 (228)
83 PF12348 CLASP_N: CLASP N term 98.7 3.4E-07 7.4E-12 90.6 16.4 180 363-555 19-212 (228)
84 PF08506 Cse1: Cse1; InterPro 98.7 5E-06 1.1E-10 86.5 25.3 280 130-457 30-370 (370)
85 KOG1240 Protein kinase contain 98.7 3.3E-06 7.1E-11 94.8 23.9 278 406-740 437-728 (1431)
86 KOG1078 Vesicle coat complex C 98.7 0.00031 6.8E-09 76.1 36.7 472 127-736 60-531 (865)
87 KOG2032 Uncharacterized conser 98.6 8.3E-05 1.8E-09 76.2 29.1 293 406-737 231-531 (533)
88 KOG0414 Chromosome condensatio 98.6 0.0026 5.6E-08 72.6 54.5 132 33-164 292-432 (1251)
89 PF13513 HEAT_EZ: HEAT-like re 98.6 1.1E-07 2.5E-12 69.0 5.6 55 406-460 1-55 (55)
90 PF12755 Vac14_Fab1_bd: Vacuol 98.6 9.5E-07 2.1E-11 71.6 11.1 86 449-539 2-87 (97)
91 KOG2259 Uncharacterized conser 98.6 0.00061 1.3E-08 72.3 34.0 274 223-573 200-529 (823)
92 PF05804 KAP: Kinesin-associat 98.5 0.0013 2.7E-08 74.0 36.7 374 236-694 264-651 (708)
93 KOG4535 HEAT and armadillo rep 98.5 0.0028 6.1E-08 64.8 34.5 457 105-619 8-586 (728)
94 KOG4535 HEAT and armadillo rep 98.4 0.0013 2.7E-08 67.2 30.8 464 62-576 7-586 (728)
95 KOG1078 Vesicle coat complex C 98.4 0.0016 3.5E-08 70.9 32.6 224 13-256 62-317 (865)
96 cd00020 ARM Armadillo/beta-cat 98.4 1.8E-06 3.9E-11 75.7 9.4 110 390-507 8-119 (120)
97 KOG0414 Chromosome condensatio 98.3 0.012 2.6E-07 67.4 49.1 149 701-864 916-1064(1251)
98 KOG2259 Uncharacterized conser 98.3 0.00086 1.9E-08 71.3 28.9 306 134-512 201-515 (823)
99 PF08389 Xpo1: Exportin 1-like 98.3 1.1E-06 2.5E-11 80.3 7.0 135 107-245 2-148 (148)
100 KOG2062 26S proteasome regulat 98.3 0.012 2.5E-07 63.9 37.4 119 667-805 559-677 (929)
101 KOG1058 Vesicle coat complex C 98.2 0.0061 1.3E-07 66.1 32.8 165 13-203 21-195 (948)
102 KOG1077 Vesicle coat complex A 98.2 0.013 2.9E-07 63.1 39.0 278 91-436 144-448 (938)
103 COG5096 Vesicle coat complex, 98.2 0.019 4.1E-07 64.4 37.6 161 32-210 35-196 (757)
104 KOG1077 Vesicle coat complex A 98.2 0.014 3.1E-07 62.8 35.5 408 10-525 9-450 (938)
105 PF12717 Cnd1: non-SMC mitotic 98.2 7.4E-05 1.6E-09 69.9 15.4 133 144-291 1-139 (178)
106 KOG4653 Uncharacterized conser 98.1 0.00043 9.4E-09 75.8 21.9 230 479-736 727-963 (982)
107 KOG0392 SNF2 family DNA-depend 98.1 0.01 2.2E-07 68.3 33.0 173 586-783 754-927 (1549)
108 PF13513 HEAT_EZ: HEAT-like re 98.1 5.5E-06 1.2E-10 60.1 5.0 55 677-735 1-55 (55)
109 PF12717 Cnd1: non-SMC mitotic 98.1 0.00048 1.1E-08 64.5 19.0 133 106-250 1-139 (178)
110 COG5096 Vesicle coat complex, 98.0 0.046 9.9E-07 61.5 42.9 168 189-422 28-196 (757)
111 KOG2956 CLIP-associating prote 98.0 0.001 2.2E-08 68.0 20.4 178 234-465 300-480 (516)
112 PF13646 HEAT_2: HEAT repeats; 98.0 5.6E-05 1.2E-09 61.6 9.8 85 392-504 2-88 (88)
113 KOG1820 Microtubule-associated 98.0 0.0023 5.1E-08 72.7 25.4 208 385-609 249-459 (815)
114 PF05804 KAP: Kinesin-associat 97.9 0.0011 2.3E-08 74.6 21.6 353 406-781 264-649 (708)
115 cd00020 ARM Armadillo/beta-cat 97.9 2.8E-05 6.1E-10 68.0 7.7 110 434-548 8-119 (120)
116 KOG0891 DNA-dependent protein 97.9 0.17 3.6E-06 64.7 46.2 434 394-878 486-933 (2341)
117 PF05004 IFRD: Interferon-rela 97.9 0.0055 1.2E-07 62.7 24.8 233 477-760 41-284 (309)
118 KOG0168 Putative ubiquitin fus 97.9 0.0094 2E-07 65.6 26.9 386 260-714 209-653 (1051)
119 PF05004 IFRD: Interferon-rela 97.9 0.0085 1.8E-07 61.3 25.8 210 269-529 50-282 (309)
120 KOG2956 CLIP-associating prote 97.9 0.0012 2.5E-08 67.6 18.6 198 131-390 286-488 (516)
121 KOG1820 Microtubule-associated 97.9 0.00074 1.6E-08 76.6 19.1 203 520-751 253-458 (815)
122 KOG2022 Nuclear transport rece 97.9 0.078 1.7E-06 59.2 43.5 187 109-311 440-638 (982)
123 KOG1058 Vesicle coat complex C 97.8 0.032 7E-07 60.8 29.0 140 373-527 39-181 (948)
124 KOG0168 Putative ubiquitin fus 97.8 0.023 5E-07 62.7 28.1 180 406-595 182-365 (1051)
125 KOG4413 26S proteasome regulat 97.8 0.018 3.9E-07 56.1 23.9 257 451-740 61-336 (524)
126 KOG4413 26S proteasome regulat 97.8 0.01 2.2E-07 57.8 22.1 168 113-292 63-244 (524)
127 KOG4653 Uncharacterized conser 97.7 0.0036 7.8E-08 68.9 20.6 200 132-389 728-927 (982)
128 PF14500 MMS19_N: Dos2-interac 97.7 0.009 2E-07 59.2 22.0 248 438-712 4-258 (262)
129 TIGR02270 conserved hypothetic 97.7 0.013 2.9E-07 62.1 24.2 241 94-462 55-296 (410)
130 PF13646 HEAT_2: HEAT repeats; 97.7 0.00026 5.7E-09 57.6 9.0 86 435-545 1-88 (88)
131 KOG2032 Uncharacterized conser 97.7 0.094 2E-06 54.7 32.7 266 218-548 255-530 (533)
132 KOG1293 Proteins containing ar 97.7 0.13 2.7E-06 55.7 30.5 139 406-550 391-534 (678)
133 PF08767 CRM1_C: CRM1 C termin 97.7 0.028 6E-07 58.1 25.2 253 539-864 46-316 (319)
134 KOG0413 Uncharacterized conser 97.7 0.18 3.8E-06 56.8 33.7 107 180-289 576-683 (1529)
135 PF05918 API5: Apoptosis inhib 97.7 0.12 2.6E-06 56.4 30.3 150 62-232 33-189 (556)
136 TIGR02270 conserved hypothetic 97.6 0.019 4E-07 61.1 23.9 243 130-508 53-296 (410)
137 PF14500 MMS19_N: Dos2-interac 97.6 0.015 3.3E-07 57.7 21.7 248 135-439 3-256 (262)
138 PF04826 Arm_2: Armadillo-like 97.6 0.0019 4.2E-08 63.4 14.9 187 392-598 15-209 (254)
139 COG1413 FOG: HEAT repeat [Ener 97.6 0.054 1.2E-06 57.3 26.9 90 95-209 45-135 (335)
140 KOG2021 Nuclear mRNA export fa 97.6 0.2 4.2E-06 55.0 53.1 146 721-866 548-770 (980)
141 KOG1851 Uncharacterized conser 97.5 0.31 6.6E-06 58.3 33.3 166 703-879 1525-1692(1710)
142 KOG0413 Uncharacterized conser 97.5 0.26 5.6E-06 55.6 39.1 140 677-834 945-1085(1529)
143 COG1413 FOG: HEAT repeat [Ener 97.4 0.036 7.7E-07 58.6 23.3 250 130-508 42-304 (335)
144 KOG1967 DNA repair/transcripti 97.4 0.36 7.8E-06 54.5 52.2 153 700-863 863-1019(1030)
145 PF10274 ParcG: Parkin co-regu 97.4 0.0018 3.9E-08 58.8 11.0 91 477-569 36-130 (183)
146 KOG2933 Uncharacterized conser 97.4 0.0049 1.1E-07 59.9 14.2 148 391-552 90-237 (334)
147 PF02985 HEAT: HEAT repeat; I 97.4 0.00019 4.2E-09 44.3 3.3 30 434-463 1-30 (31)
148 PF05918 API5: Apoptosis inhib 97.4 0.21 4.5E-06 54.6 27.9 285 12-315 20-320 (556)
149 KOG0891 DNA-dependent protein 97.4 0.94 2E-05 58.3 53.6 170 649-824 551-720 (2341)
150 PLN03076 ARF guanine nucleotid 97.4 0.19 4.1E-06 63.1 30.9 332 409-760 1109-1513(1780)
151 PF08569 Mo25: Mo25-like; Int 97.3 0.23 5E-06 51.1 26.6 193 95-300 78-292 (335)
152 KOG4524 Uncharacterized conser 97.3 0.48 1E-05 53.9 45.3 289 412-715 568-900 (1014)
153 PF08167 RIX1: rRNA processing 97.3 0.0069 1.5E-07 55.6 14.0 140 385-529 21-164 (165)
154 PLN03076 ARF guanine nucleotid 97.3 0.11 2.3E-06 65.2 27.9 338 126-490 1132-1513(1780)
155 KOG1410 Nuclear transport rece 97.3 0.4 8.6E-06 52.0 52.1 146 13-162 3-159 (1082)
156 PF04826 Arm_2: Armadillo-like 97.2 0.0094 2E-07 58.7 14.8 184 96-292 15-206 (254)
157 KOG1525 Sister chromatid cohes 97.2 0.92 2E-05 54.9 47.9 331 62-463 61-406 (1266)
158 PF11865 DUF3385: Domain of un 97.2 0.0068 1.5E-07 55.1 12.4 146 387-551 8-159 (160)
159 KOG2160 Armadillo/beta-catenin 97.2 0.059 1.3E-06 54.2 19.8 186 633-825 96-284 (342)
160 KOG2062 26S proteasome regulat 97.2 0.011 2.4E-07 64.0 15.5 172 40-239 511-683 (929)
161 PF13001 Ecm29: Proteasome sta 97.2 0.57 1.2E-05 52.0 30.6 82 17-104 25-113 (501)
162 PF08167 RIX1: rRNA processing 97.1 0.027 5.7E-07 51.8 15.0 130 664-801 26-163 (165)
163 cd00256 VATPase_H VATPase_H, r 97.0 0.61 1.3E-05 49.6 28.0 144 139-292 109-259 (429)
164 PF13251 DUF4042: Domain of un 97.0 0.0074 1.6E-07 55.5 10.9 145 407-551 1-176 (182)
165 KOG2081 Nuclear transport regu 97.0 0.7 1.5E-05 49.5 29.9 181 634-838 366-552 (559)
166 PF10274 ParcG: Parkin co-regu 96.9 0.019 4.1E-07 52.3 12.4 89 663-755 38-130 (183)
167 KOG1949 Uncharacterized conser 96.8 0.048 1.1E-06 58.9 15.8 204 81-292 113-332 (1005)
168 KOG1517 Guanine nucleotide bin 96.8 0.13 2.7E-06 58.6 19.4 101 406-510 571-673 (1387)
169 KOG2025 Chromosome condensatio 96.7 0.21 4.6E-06 54.5 19.9 208 48-288 81-291 (892)
170 PF02985 HEAT: HEAT repeat; I 96.6 0.0038 8.3E-08 38.5 4.1 31 390-423 1-31 (31)
171 PF08064 UME: UME (NUC010) dom 96.6 0.043 9.4E-07 45.9 11.4 79 675-759 27-106 (107)
172 PF13251 DUF4042: Domain of un 96.5 0.051 1.1E-06 50.1 12.5 146 108-253 1-177 (182)
173 COG5218 YCG1 Chromosome conden 96.5 1.5 3.3E-05 47.0 43.8 171 104-285 22-193 (885)
174 PF12719 Cnd3: Nuclear condens 96.5 0.27 5.9E-06 50.6 19.3 151 430-596 23-183 (298)
175 KOG1967 DNA repair/transcripti 96.5 2.2 4.7E-05 48.6 57.5 140 662-805 866-1007(1030)
176 KOG2933 Uncharacterized conser 96.5 0.028 6E-07 54.9 10.8 134 364-511 101-237 (334)
177 KOG2759 Vacuolar H+-ATPase V1 96.5 1.3 2.8E-05 45.7 23.9 347 47-462 64-438 (442)
178 PF12231 Rif1_N: Rap1-interact 96.5 1.5 3.3E-05 46.6 29.7 316 368-736 10-351 (372)
179 cd00256 VATPase_H VATPase_H, r 96.5 1.6 3.5E-05 46.6 25.9 69 664-737 354-425 (429)
180 KOG0889 Histone acetyltransfer 96.4 5.9 0.00013 52.4 57.1 288 390-735 985-1304(3550)
181 KOG1293 Proteins containing ar 96.4 2.1 4.6E-05 46.8 31.8 135 583-736 395-532 (678)
182 smart00802 UME Domain in UVSB 96.3 0.076 1.6E-06 44.0 11.0 77 676-758 28-105 (107)
183 PF12719 Cnd3: Nuclear condens 96.3 0.78 1.7E-05 47.3 21.0 118 92-210 26-144 (298)
184 KOG1048 Neural adherens juncti 96.3 0.26 5.6E-06 54.9 17.9 155 701-867 515-690 (717)
185 PF01603 B56: Protein phosphat 96.2 0.49 1.1E-05 51.0 19.7 236 15-260 133-380 (409)
186 KOG2549 Transcription initiati 96.2 0.47 1E-05 50.5 18.4 177 220-440 206-390 (576)
187 PF05536 Neurochondrin: Neuroc 96.1 3.1 6.7E-05 46.6 33.6 240 390-654 6-266 (543)
188 KOG2160 Armadillo/beta-catenin 96.1 1.6 3.5E-05 44.3 21.1 142 143-292 95-241 (342)
189 PF11865 DUF3385: Domain of un 96.1 0.045 9.8E-07 49.8 9.4 149 657-823 4-157 (160)
190 KOG1949 Uncharacterized conser 96.1 3.1 6.7E-05 45.8 26.2 160 32-209 163-331 (1005)
191 KOG0567 HEAT repeat-containing 96.0 1.6 3.4E-05 42.1 19.6 88 394-509 192-281 (289)
192 KOG1243 Protein kinase [Genera 96.0 0.13 2.7E-06 56.4 13.8 254 188-510 262-517 (690)
193 KOG0567 HEAT repeat-containing 96.0 0.84 1.8E-05 43.9 17.5 76 367-460 203-278 (289)
194 PF08623 TIP120: TATA-binding 95.8 0.092 2E-06 47.5 10.0 96 427-530 3-116 (169)
195 KOG4500 Rho/Rac GTPase guanine 95.8 2.8 6.1E-05 43.3 26.7 112 388-508 314-431 (604)
196 KOG1525 Sister chromatid cohes 95.8 6.9 0.00015 47.8 49.5 366 92-532 47-436 (1266)
197 KOG2137 Protein kinase [Signal 95.8 0.49 1.1E-05 52.2 17.1 208 539-785 292-500 (700)
198 KOG1517 Guanine nucleotide bin 95.8 0.47 1E-05 54.3 17.1 206 32-255 486-737 (1387)
199 PF08064 UME: UME (NUC010) dom 95.7 0.24 5.3E-06 41.4 11.7 96 216-314 6-105 (107)
200 KOG2759 Vacuolar H+-ATPase V1 95.7 3.2 6.8E-05 43.0 24.7 71 433-509 366-439 (442)
201 PF10521 DUF2454: Protein of u 95.6 0.5 1.1E-05 48.0 16.0 168 406-575 89-277 (282)
202 KOG0946 ER-Golgi vesicle-tethe 95.6 5.1 0.00011 45.0 39.9 210 49-292 23-242 (970)
203 cd08050 TAF6 TATA Binding Prot 95.5 0.34 7.4E-06 50.6 14.6 156 222-421 179-340 (343)
204 KOG0946 ER-Golgi vesicle-tethe 95.5 5.4 0.00012 44.8 32.5 201 368-572 40-263 (970)
205 COG5101 CRM1 Importin beta-rel 95.5 4.6 0.0001 43.9 35.1 104 674-785 541-652 (1053)
206 KOG0889 Histone acetyltransfer 95.5 14 0.0003 49.3 45.1 91 178-270 47-146 (3550)
207 PF04510 DUF577: Family of unk 95.3 1.4 3E-05 39.6 15.1 147 93-251 3-165 (174)
208 COG5657 CSE1 CAS/CSE protein i 95.2 7.6 0.00016 44.5 44.9 78 474-551 528-611 (947)
209 PF12054 DUF3535: Domain of un 95.2 3.5 7.6E-05 44.8 21.4 80 363-445 99-180 (441)
210 KOG2137 Protein kinase [Signal 95.2 2.2 4.8E-05 47.4 19.5 249 15-289 239-494 (700)
211 PF08623 TIP120: TATA-binding 95.2 0.1 2.3E-06 47.1 8.1 92 177-271 6-115 (169)
212 PF10521 DUF2454: Protein of u 95.1 0.39 8.4E-06 48.8 13.3 146 472-617 112-276 (282)
213 PF11864 DUF3384: Domain of un 95.1 6.8 0.00015 43.3 35.5 288 109-461 6-329 (464)
214 PF13001 Ecm29: Proteasome sta 95.0 1.5 3.2E-05 48.8 18.4 220 52-290 239-487 (501)
215 PF04118 Dopey_N: Dopey, N-ter 95.0 3.2 7E-05 42.2 19.0 164 584-778 27-198 (307)
216 smart00802 UME Domain in UVSB 95.0 0.56 1.2E-05 39.0 11.2 97 425-528 3-104 (107)
217 KOG4524 Uncharacterized conser 94.9 9.6 0.00021 44.1 45.9 163 669-835 809-986 (1014)
218 COG5116 RPN2 26S proteasome re 94.9 0.59 1.3E-05 49.7 13.5 158 49-235 517-676 (926)
219 PF10363 DUF2435: Protein of u 94.7 0.33 7.1E-06 39.1 8.9 76 181-257 4-79 (92)
220 KOG4500 Rho/Rac GTPase guanine 94.6 6.8 0.00015 40.7 24.2 113 662-779 314-429 (604)
221 KOG1243 Protein kinase [Genera 94.5 0.8 1.7E-05 50.5 14.1 170 367-551 346-517 (690)
222 COG5116 RPN2 26S proteasome re 94.5 0.47 1E-05 50.4 11.8 113 406-537 566-679 (926)
223 KOG2149 Uncharacterized conser 94.4 0.82 1.8E-05 47.0 13.1 111 182-292 60-171 (393)
224 PF08569 Mo25: Mo25-like; Int 94.4 1.9 4.1E-05 44.6 16.0 184 62-251 87-284 (335)
225 PF01603 B56: Protein phosphat 94.3 9.3 0.0002 41.3 27.7 86 415-509 278-371 (409)
226 PF11919 DUF3437: Domain of un 94.3 0.08 1.7E-06 42.2 4.6 77 809-887 4-80 (90)
227 PF10363 DUF2435: Protein of u 94.3 0.6 1.3E-05 37.6 9.6 83 393-491 7-89 (92)
228 KOG1837 Uncharacterized conser 94.3 18 0.00039 44.4 31.0 183 684-873 1416-1619(1621)
229 KOG0803 Predicted E3 ubiquitin 94.2 6.8 0.00015 47.9 22.1 112 180-291 41-153 (1312)
230 PF12530 DUF3730: Protein of u 94.2 6.3 0.00014 38.8 20.9 190 27-235 13-217 (234)
231 KOG1822 Uncharacterized conser 94.1 22 0.00047 44.7 37.8 225 17-250 878-1127(2067)
232 COG5098 Chromosome condensatio 94.1 12 0.00025 41.5 53.2 108 96-212 302-418 (1128)
233 KOG2025 Chromosome condensatio 93.8 13 0.00029 41.3 39.2 128 150-287 61-189 (892)
234 PF03224 V-ATPase_H_N: V-ATPas 93.8 3.7 7.9E-05 42.7 17.1 184 664-858 107-308 (312)
235 PF12830 Nipped-B_C: Sister ch 93.7 2 4.4E-05 40.5 13.7 127 178-310 6-139 (187)
236 PF01347 Vitellogenin_N: Lipop 93.7 3.7 8.1E-05 47.7 18.9 144 130-288 430-586 (618)
237 KOG3961 Uncharacterized conser 93.6 0.21 4.6E-06 45.8 6.5 95 477-574 112-209 (262)
238 smart00638 LPD_N Lipoprotein N 93.6 4.7 0.0001 46.3 19.2 118 366-505 412-542 (574)
239 COG5095 TAF6 Transcription ini 93.5 1.8 3.9E-05 42.2 12.7 155 367-532 214-384 (450)
240 PF03224 V-ATPase_H_N: V-ATPas 93.4 4.1 8.8E-05 42.3 16.8 196 47-255 54-274 (312)
241 COG5095 TAF6 Transcription ini 93.3 3 6.6E-05 40.7 13.9 149 428-595 196-360 (450)
242 KOG2149 Uncharacterized conser 93.3 2.3 5E-05 43.9 13.8 128 397-531 66-193 (393)
243 PF14664 RICTOR_N: Rapamycin-i 93.2 13 0.00028 39.4 22.3 159 126-301 20-186 (371)
244 cd08050 TAF6 TATA Binding Prot 93.0 2.4 5.1E-05 44.4 14.2 129 427-575 176-321 (343)
245 PF12231 Rif1_N: Rap1-interact 92.6 17 0.00036 38.9 30.8 169 406-574 148-329 (372)
246 KOG1048 Neural adherens juncti 92.4 24 0.00051 40.1 21.6 73 662-736 565-640 (717)
247 PF00514 Arm: Armadillo/beta-c 92.3 0.25 5.3E-06 32.8 3.9 28 434-461 13-40 (41)
248 PF04118 Dopey_N: Dopey, N-ter 92.3 15 0.00032 37.6 23.9 164 106-291 2-167 (307)
249 KOG1851 Uncharacterized conser 92.2 36 0.00078 42.0 34.3 177 368-555 1504-1684(1710)
250 KOG2549 Transcription initiati 91.6 7.5 0.00016 41.9 15.4 154 367-531 223-394 (576)
251 KOG4199 Uncharacterized conser 91.5 17 0.00036 36.7 28.5 314 126-506 103-442 (461)
252 KOG1222 Kinesin associated pro 91.3 22 0.00048 37.6 28.7 156 513-693 501-664 (791)
253 PF07571 DUF1546: Protein of u 91.3 0.85 1.8E-05 36.9 6.6 60 363-423 18-80 (92)
254 PF01347 Vitellogenin_N: Lipop 91.3 34 0.00074 39.7 22.9 120 105-247 447-586 (618)
255 KOG1837 Uncharacterized conser 91.2 46 0.00099 41.2 28.4 99 583-701 1522-1620(1621)
256 PF12054 DUF3535: Domain of un 91.1 26 0.00057 38.2 22.4 96 107-209 101-208 (441)
257 PF08389 Xpo1: Exportin 1-like 91.0 2 4.3E-05 38.8 9.9 124 367-503 4-148 (148)
258 KOG2213 Apoptosis inhibitor 5/ 90.9 16 0.00034 37.7 16.1 53 448-509 39-91 (460)
259 PF11864 DUF3384: Domain of un 90.6 31 0.00068 38.1 34.5 299 367-691 6-329 (464)
260 cd03568 VHS_STAM VHS domain fa 90.5 5.3 0.00011 35.6 11.5 79 476-554 34-115 (144)
261 PF08161 NUC173: NUC173 domain 90.5 7.4 0.00016 36.9 13.1 133 366-506 56-197 (198)
262 PF12830 Nipped-B_C: Sister ch 90.3 13 0.00029 34.9 14.8 77 131-219 8-84 (187)
263 KOG1822 Uncharacterized conser 90.2 63 0.0014 40.9 56.8 188 51-250 54-248 (2067)
264 cd03567 VHS_GGA VHS domain fam 89.7 11 0.00024 33.2 12.7 77 477-553 36-120 (139)
265 KOG0803 Predicted E3 ubiquitin 89.7 43 0.00094 41.4 21.3 231 477-716 39-288 (1312)
266 PF00514 Arm: Armadillo/beta-c 89.5 0.78 1.7E-05 30.4 4.3 29 479-507 12-40 (41)
267 smart00638 LPD_N Lipoprotein N 88.7 51 0.0011 37.9 22.6 120 105-247 409-542 (574)
268 cd03561 VHS VHS domain family; 88.6 9 0.0002 33.7 11.5 77 663-741 37-116 (133)
269 KOG2122 Beta-catenin-binding p 88.4 73 0.0016 39.3 25.7 71 389-463 530-602 (2195)
270 cd03569 VHS_Hrs_Vps27p VHS dom 88.1 9.7 0.00021 33.9 11.4 78 477-554 39-119 (142)
271 PF11698 V-ATPase_H_C: V-ATPas 87.4 3.7 8.1E-05 34.7 7.8 69 434-508 44-115 (119)
272 smart00288 VHS Domain present 87.3 11 0.00023 33.2 11.1 76 663-740 37-114 (133)
273 cd03561 VHS VHS domain family; 87.3 7.9 0.00017 34.0 10.4 99 103-212 14-115 (133)
274 PF14664 RICTOR_N: Rapamycin-i 87.0 42 0.0009 35.7 17.2 213 64-292 38-270 (371)
275 PF08161 NUC173: NUC173 domain 86.9 27 0.0006 33.1 14.2 56 639-696 19-74 (198)
276 cd03568 VHS_STAM VHS domain fa 86.8 2.6 5.6E-05 37.5 7.0 77 130-212 36-113 (144)
277 PF11919 DUF3437: Domain of un 86.8 1.6 3.5E-05 34.9 5.1 57 406-463 3-59 (90)
278 PF09324 DUF1981: Domain of un 86.7 4.5 9.8E-05 32.2 7.6 65 223-287 19-84 (86)
279 PF00790 VHS: VHS domain; Int 86.6 23 0.00049 31.5 13.3 81 474-554 37-123 (140)
280 PF12783 Sec7_N: Guanine nucle 86.3 10 0.00023 35.0 11.2 106 145-250 36-146 (168)
281 PF12074 DUF3554: Domain of un 86.3 48 0.001 35.0 20.1 199 50-257 24-242 (339)
282 KOG3961 Uncharacterized conser 86.1 2.1 4.6E-05 39.6 6.1 87 664-754 115-204 (262)
283 KOG2011 Sister chromatid cohes 85.7 70 0.0015 38.3 19.2 113 409-529 262-378 (1048)
284 PF00790 VHS: VHS domain; Int 85.6 15 0.00033 32.7 11.3 76 663-740 42-121 (140)
285 smart00288 VHS Domain present 85.3 14 0.0003 32.5 10.8 78 476-553 34-115 (133)
286 PF11707 Npa1: Ribosome 60S bi 85.2 33 0.00072 35.9 15.5 174 109-292 42-238 (330)
287 PF05536 Neurochondrin: Neuroc 85.1 73 0.0016 36.0 40.7 183 367-554 73-266 (543)
288 KOG2085 Serine/threonine prote 84.8 20 0.00043 37.3 12.7 85 176-260 337-424 (457)
289 cd03567 VHS_GGA VHS domain fam 84.4 11 0.00023 33.3 9.6 100 101-211 13-118 (139)
290 PF03542 Tuberin: Tuberin; In 84.2 59 0.0013 34.1 16.6 117 194-315 211-329 (356)
291 PF08767 CRM1_C: CRM1 C termin 84.1 57 0.0012 33.9 24.7 122 371-492 92-227 (319)
292 cd03569 VHS_Hrs_Vps27p VHS dom 84.0 16 0.00035 32.4 10.7 76 663-741 41-118 (142)
293 PF12765 Cohesin_HEAT: HEAT re 84.0 1.7 3.7E-05 28.9 3.4 26 179-204 17-42 (42)
294 KOG1222 Kinesin associated pro 82.8 71 0.0015 34.1 20.6 117 409-532 280-398 (791)
295 KOG1848 Uncharacterized conser 82.6 99 0.0021 38.0 18.6 100 104-210 853-959 (1610)
296 COG5218 YCG1 Chromosome conden 82.4 83 0.0018 34.6 46.2 199 194-458 61-262 (885)
297 PF04510 DUF577: Family of unk 81.9 40 0.00087 30.6 13.7 37 681-717 60-97 (174)
298 PF12333 Ipi1_N: Rix1 complex 81.9 4.5 9.7E-05 33.5 5.9 62 253-316 2-64 (102)
299 PF08713 DNA_alkylation: DNA a 81.8 48 0.001 32.0 14.4 158 32-219 35-194 (213)
300 PF08713 DNA_alkylation: DNA a 81.8 5.9 0.00013 38.4 7.9 88 364-465 99-187 (213)
301 KOG2973 Uncharacterized conser 81.7 36 0.00078 34.1 12.6 104 394-508 8-111 (353)
302 PF04388 Hamartin: Hamartin pr 81.4 40 0.00087 39.1 15.3 79 235-315 82-162 (668)
303 PF14868 DUF4487: Domain of un 81.3 99 0.0021 34.7 23.4 81 382-464 472-554 (559)
304 PF11701 UNC45-central: Myosin 81.1 13 0.00029 33.8 9.3 141 98-247 8-156 (157)
305 PF12333 Ipi1_N: Rix1 complex 80.5 6.6 0.00014 32.5 6.5 60 655-716 5-65 (102)
306 cd03572 ENTH_epsin_related ENT 79.3 36 0.00078 29.2 10.5 73 178-250 36-119 (122)
307 PF12783 Sec7_N: Guanine nucle 79.3 38 0.00082 31.2 12.0 100 193-292 35-147 (168)
308 cd03572 ENTH_epsin_related ENT 79.1 27 0.00058 29.9 9.7 72 664-735 39-117 (122)
309 KOG0929 Guanine nucleotide exc 78.9 1.5E+02 0.0032 37.3 19.0 233 46-292 1034-1299(1514)
310 PF12765 Cohesin_HEAT: HEAT re 78.3 3.7 8E-05 27.3 3.5 25 432-456 17-41 (42)
311 KOG2005 26S proteasome regulat 78.3 96 0.0021 34.8 15.5 101 388-506 414-516 (878)
312 smart00185 ARM Armadillo/beta- 78.2 2.5 5.4E-05 27.7 2.8 28 434-461 13-40 (41)
313 PF04388 Hamartin: Hamartin pr 78.1 57 0.0012 37.8 15.2 80 633-713 81-161 (668)
314 PF07571 DUF1546: Protein of u 78.1 10 0.00023 30.6 6.8 61 674-736 17-77 (92)
315 cd03565 VHS_Tom1 VHS domain fa 77.4 46 0.001 29.6 11.2 78 477-554 36-120 (141)
316 PF11698 V-ATPase_H_C: V-ATPas 77.3 29 0.00062 29.5 9.2 94 364-462 19-115 (119)
317 COG5231 VMA13 Vacuolar H+-ATPa 76.5 90 0.0019 31.5 18.8 69 434-508 357-428 (432)
318 KOG2038 CAATT-binding transcri 76.5 1.5E+02 0.0032 34.0 27.7 72 219-294 302-374 (988)
319 PF11707 Npa1: Ribosome 60S bi 76.3 1E+02 0.0023 32.2 17.0 104 635-738 129-238 (330)
320 PF14225 MOR2-PAG1_C: Cell mor 75.5 92 0.002 31.2 19.3 185 475-695 60-257 (262)
321 PF12397 U3snoRNP10: U3 small 75.1 50 0.0011 28.4 10.8 72 385-462 2-74 (121)
322 PF12612 TFCD_C: Tubulin foldi 74.6 37 0.00081 32.2 10.7 134 406-549 21-158 (193)
323 KOG3036 Protein involved in ce 74.4 51 0.0011 31.9 10.9 70 664-737 125-197 (293)
324 PF11935 DUF3453: Domain of un 74.2 95 0.0021 30.7 14.2 86 181-266 44-161 (239)
325 PF12530 DUF3730: Protein of u 73.7 96 0.0021 30.5 21.9 188 104-312 12-210 (234)
326 PF11701 UNC45-central: Myosin 73.0 13 0.00029 33.8 6.9 130 367-505 21-156 (157)
327 PF08146 BP28CT: BP28CT (NUC21 72.5 56 0.0012 29.5 10.7 105 514-619 4-121 (153)
328 KOG2973 Uncharacterized conser 72.4 1.1E+02 0.0025 30.8 20.3 102 96-209 6-111 (353)
329 PF12243 CTK3: CTD kinase subu 72.3 69 0.0015 28.3 11.4 98 437-548 12-118 (139)
330 PF09324 DUF1981: Domain of un 71.9 27 0.00059 27.8 7.6 57 672-732 27-83 (86)
331 cd06561 AlkD_like A new struct 71.3 38 0.00082 32.2 10.2 66 392-465 108-173 (197)
332 smart00185 ARM Armadillo/beta- 70.8 8.2 0.00018 25.1 3.9 28 480-507 13-40 (41)
333 PF12397 U3snoRNP10: U3 small 70.7 25 0.00054 30.3 7.9 73 429-509 2-75 (121)
334 PF14631 FancD2: Fanconi anaem 70.4 1.2E+02 0.0025 38.8 16.1 167 644-824 418-584 (1426)
335 PF12612 TFCD_C: Tubulin foldi 70.3 1E+02 0.0022 29.3 12.8 153 431-595 5-159 (193)
336 COG5098 Chromosome condensatio 70.2 2E+02 0.0043 32.6 51.5 129 32-163 278-418 (1128)
337 KOG1789 Endocytosis protein RM 69.9 2.5E+02 0.0054 33.7 21.7 91 196-292 1741-1842(2235)
338 KOG2011 Sister chromatid cohes 69.6 2.6E+02 0.0057 33.8 18.5 131 141-288 297-432 (1048)
339 PF12074 DUF3554: Domain of un 68.8 1.6E+02 0.0034 31.0 19.0 192 91-292 20-236 (339)
340 cd00197 VHS_ENTH_ANTH VHS, ENT 68.3 54 0.0012 27.9 9.4 77 126-208 32-114 (115)
341 PF03542 Tuberin: Tuberin; In 68.0 1.7E+02 0.0036 30.9 15.8 92 448-549 212-303 (356)
342 KOG1877 Putative transmembrane 67.8 1.8E+02 0.0038 34.1 15.3 84 141-232 66-151 (819)
343 PF03130 HEAT_PBS: PBS lyase H 67.3 7.3 0.00016 22.9 2.6 14 449-462 1-14 (27)
344 KOG1848 Uncharacterized conser 67.2 3.2E+02 0.007 34.0 24.6 262 406-693 856-1133(1610)
345 KOG2199 Signal transducing ada 67.0 68 0.0015 33.3 10.7 96 406-512 26-122 (462)
346 PF14668 RICTOR_V: Rapamycin-i 66.6 13 0.00029 28.4 4.5 55 408-464 3-60 (73)
347 PF14961 BROMI: Broad-minded p 66.2 71 0.0015 38.6 12.2 71 96-166 164-237 (1296)
348 KOG0929 Guanine nucleotide exc 66.1 3.6E+02 0.0079 34.2 19.3 158 104-270 1048-1224(1514)
349 cd00197 VHS_ENTH_ANTH VHS, ENT 64.2 76 0.0017 26.9 9.5 73 385-460 33-113 (115)
350 cd06561 AlkD_like A new struct 63.8 1.3E+02 0.0029 28.4 13.3 75 436-520 108-182 (197)
351 KOG2199 Signal transducing ada 63.5 90 0.0019 32.4 10.8 77 386-465 42-121 (462)
352 PF04078 Rcd1: Cell differenti 62.5 1.3E+02 0.0029 29.7 11.4 71 663-737 95-168 (262)
353 PF14631 FancD2: Fanconi anaem 60.7 4.8E+02 0.01 33.7 31.7 122 422-552 424-545 (1426)
354 COG5537 IRR1 Cohesin [Cell div 60.3 1.5E+02 0.0032 33.0 12.3 99 142-251 286-387 (740)
355 KOG1087 Cytosolic sorting prot 60.3 66 0.0014 35.0 10.0 76 478-553 37-116 (470)
356 PF01465 GRIP: GRIP domain; I 58.5 20 0.00043 24.5 3.8 36 89-124 3-38 (46)
357 PF11841 DUF3361: Domain of un 58.5 1.4E+02 0.0031 27.0 11.8 98 195-292 32-132 (160)
358 PF14225 MOR2-PAG1_C: Cell mor 57.6 2.1E+02 0.0046 28.6 20.4 60 474-534 183-242 (262)
359 KOG1877 Putative transmembrane 57.4 3.8E+02 0.0082 31.5 23.4 134 427-574 11-151 (819)
360 KOG1087 Cytosolic sorting prot 56.8 59 0.0013 35.4 9.0 103 99-212 11-115 (470)
361 smart00567 EZ_HEAT E-Z type HE 55.5 18 0.00039 21.7 3.0 15 406-420 1-15 (30)
362 PF11935 DUF3453: Domain of un 54.3 2.3E+02 0.0049 28.0 19.3 126 442-573 2-163 (239)
363 PF12726 SEN1_N: SEN1 N termin 53.8 4.5E+02 0.0097 31.3 48.7 32 220-251 119-150 (727)
364 PF10350 DUF2428: Putative dea 53.3 2.5E+02 0.0053 28.1 13.1 163 363-531 59-251 (255)
365 COG4912 Predicted DNA alkylati 53.2 63 0.0014 30.8 7.4 82 375-464 103-185 (222)
366 PF07539 DRIM: Down-regulated 52.5 99 0.0021 27.5 8.2 30 179-208 16-45 (141)
367 PF14668 RICTOR_V: Rapamycin-i 52.1 49 0.0011 25.3 5.4 53 450-509 4-59 (73)
368 KOG3678 SARM protein (with ste 51.4 3.4E+02 0.0073 29.1 14.1 100 18-124 183-295 (832)
369 smart00755 Grip golgin-97, Ran 50.2 32 0.00069 23.5 3.7 34 90-124 3-36 (46)
370 KOG3687 Tuberin - Rap/ran-GTPa 48.6 5.4E+02 0.012 30.7 32.4 39 674-712 484-522 (1697)
371 PHA01351 putative minor struct 47.9 3.5E+02 0.0076 30.6 12.7 26 736-761 128-153 (1070)
372 KOG2122 Beta-catenin-binding p 47.5 7E+02 0.015 31.7 27.6 69 664-736 531-600 (2195)
373 PF04499 SAPS: SIT4 phosphatas 47.3 4.4E+02 0.0095 29.2 14.8 61 662-740 33-95 (475)
374 PF11841 DUF3361: Domain of un 46.7 2.3E+02 0.0049 25.8 12.9 100 146-254 32-135 (160)
375 cd03565 VHS_Tom1 VHS domain fa 46.6 2.1E+02 0.0046 25.4 12.2 75 388-465 37-118 (141)
376 PF14868 DUF4487: Domain of un 45.3 5E+02 0.011 29.4 25.0 94 367-465 244-338 (559)
377 KOG2213 Apoptosis inhibitor 5/ 43.8 4.1E+02 0.009 28.0 22.1 130 146-289 39-178 (460)
378 COG5369 Uncharacterized conser 43.7 64 0.0014 35.0 6.5 134 410-549 407-545 (743)
379 PF13925 Katanin_con80: con80 40.1 1.5E+02 0.0032 27.3 7.7 53 113-165 46-103 (164)
380 smart00582 RPR domain present 38.9 1.7E+02 0.0037 25.0 7.7 73 130-209 31-107 (121)
381 PF10193 Telomere_reg-2: Telom 38.7 1.6E+02 0.0034 25.0 7.1 80 182-261 5-90 (114)
382 COG5110 RPN1 26S proteasome re 37.8 6E+02 0.013 28.1 33.7 308 388-758 412-723 (881)
383 PF14961 BROMI: Broad-minded p 37.7 6.7E+02 0.015 31.0 13.9 131 133-272 163-315 (1296)
384 COG5231 VMA13 Vacuolar H+-ATPa 37.6 4.7E+02 0.01 26.8 21.7 47 644-691 381-427 (432)
385 PF12422 Condensin2nSMC: Conde 36.6 2.9E+02 0.0064 24.9 9.0 82 76-157 54-145 (152)
386 PF04078 Rcd1: Cell differenti 35.9 4.5E+02 0.0098 26.1 15.8 60 145-210 110-169 (262)
387 cd07064 AlkD_like_1 A new stru 35.4 4.1E+02 0.0089 25.5 17.1 159 32-219 28-189 (208)
388 PF05327 RRN3: RNA polymerase 35.2 7.3E+02 0.016 28.4 18.8 38 474-511 341-380 (563)
389 PF07539 DRIM: Down-regulated 33.4 3.5E+02 0.0075 24.1 8.9 82 478-572 16-97 (141)
390 COG5537 IRR1 Cohesin [Cell div 33.2 7.5E+02 0.016 27.9 18.6 84 230-315 284-367 (740)
391 PF10350 DUF2428: Putative dea 32.9 5.1E+02 0.011 25.9 14.4 101 215-315 136-250 (255)
392 KOG3036 Protein involved in ce 31.1 5.2E+02 0.011 25.4 12.3 104 192-296 137-252 (293)
393 PF10441 Urb2: Urb2/Npa2 famil 30.2 5.2E+02 0.011 25.1 13.8 72 728-799 8-85 (223)
394 KOG4199 Uncharacterized conser 29.6 6.5E+02 0.014 26.0 27.3 97 430-533 329-428 (461)
395 COG1698 Uncharacterized protei 29.2 2.5E+02 0.0054 22.3 5.9 37 8-45 9-48 (93)
396 KOG1926 Predicted regulator of 28.8 1.2E+03 0.025 28.7 26.9 75 62-140 84-158 (1129)
397 KOG1810 Cell cycle-associated 28.8 1.2E+03 0.027 29.0 15.2 35 476-510 934-968 (1417)
398 COG5234 CIN1 Beta-tubulin fold 28.6 9.6E+02 0.021 27.7 19.3 140 9-162 379-525 (993)
399 smart00582 RPR domain present 28.0 3.8E+02 0.0082 22.8 10.1 62 438-513 5-66 (121)
400 cd03562 CID CID (CTD-Interacti 27.9 3.7E+02 0.008 22.6 10.4 44 475-518 33-76 (114)
401 PF10193 Telomere_reg-2: Telom 26.9 3.1E+02 0.0066 23.3 7.0 71 766-836 19-92 (114)
402 KOG0905 Phosphoinositide 3-kin 26.4 1.3E+03 0.029 28.6 16.4 122 12-149 821-946 (1639)
403 PF08620 RPAP1_C: RPAP1-like, 26.1 1.1E+02 0.0023 23.5 3.6 30 133-162 41-70 (73)
404 cd07064 AlkD_like_1 A new stru 26.0 6E+02 0.013 24.4 15.4 165 63-261 24-190 (208)
405 KOG2256 Predicted protein invo 25.8 1E+03 0.022 27.2 29.5 178 177-396 279-475 (661)
406 TIGR00985 3a0801s04tom mitocho 25.1 3.7E+02 0.0081 24.1 7.2 68 802-878 77-147 (148)
407 PF13981 SopA: SopA-like centr 25.0 4.8E+02 0.01 23.0 8.8 57 236-292 68-124 (135)
408 KOG2256 Predicted protein invo 24.8 1.1E+03 0.023 27.0 25.2 78 633-714 394-478 (661)
409 PF14911 MMS22L_C: S-phase gen 24.7 8.6E+02 0.019 25.9 24.2 39 429-467 65-103 (373)
410 PF06025 DUF913: Domain of Unk 24.2 6.8E+02 0.015 26.8 10.6 109 676-786 122-237 (379)
411 PF06371 Drf_GBD: Diaphanous G 24.0 2.7E+02 0.006 25.9 7.1 93 367-461 92-186 (187)
412 PF04869 Uso1_p115_head: Uso1 23.6 7.5E+02 0.016 25.6 10.3 158 50-229 36-207 (312)
413 PF12726 SEN1_N: SEN1 N termin 23.4 1.3E+03 0.028 27.4 33.0 120 95-218 122-252 (727)
414 KOG3613 Dopey and related pred 23.3 1.5E+03 0.031 29.6 13.9 77 194-270 1501-1580(1749)
415 KOG3678 SARM protein (with ste 22.7 9.9E+02 0.021 25.8 16.7 159 35-208 167-335 (832)
416 PF14222 MOR2-PAG1_N: Cell mor 22.3 1.2E+03 0.026 26.6 31.8 264 419-695 207-503 (552)
417 PF06371 Drf_GBD: Diaphanous G 22.2 3.1E+02 0.0067 25.6 7.1 56 144-208 129-186 (187)
418 KOG1823 DRIM (Down-regulated i 21.9 1.7E+03 0.037 28.3 35.3 370 429-822 560-960 (1364)
419 PF05327 RRN3: RNA polymerase 21.3 1.3E+03 0.027 26.5 24.3 32 179-210 72-104 (563)
420 PRK04964 hypothetical protein; 20.9 1.5E+02 0.0033 21.4 3.2 49 687-737 8-60 (66)
421 COG5209 RCD1 Uncharacterized p 20.8 4.2E+02 0.0091 25.5 7.0 69 664-736 146-217 (315)
422 PF01417 ENTH: ENTH domain; I 20.4 5.6E+02 0.012 22.0 8.3 61 371-431 20-81 (125)
423 cd00870 PI3Ka_III Phosphoinosi 20.3 6.8E+02 0.015 23.0 10.1 120 6-144 3-125 (166)
No 1
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-132 Score=1002.95 Aligned_cols=871 Identities=55% Similarity=0.951 Sum_probs=823.1
Q ss_pred CCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhh
Q 002697 4 SVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (891)
Q Consensus 4 ~~~~~p~~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w 83 (891)
.|.|+|++++++|+.++|++++|||++ +|+.+...++++...|+|..||+.||...++.+..+|.+|+.+|||.++.+|
T Consensus 2 ~~~w~p~e~~l~ql~~lLk~s~Spn~~-~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~ 80 (885)
T KOG2023|consen 2 AMTWQPDEQGLQQLAQLLKNSQSPNSE-TRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHY 80 (885)
T ss_pred CCCCcccHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccc
Confidence 479999999999999999999999999 9999999999999999999999999988888899999999999999999999
Q ss_pred ccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhch
Q 002697 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (891)
Q Consensus 84 ~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (891)
..++++...++|..+++++.++++.||...+.++.+|+...+...||+++|.|.+++.+++....++|+.+|.++|++..
T Consensus 81 ~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa 160 (885)
T KOG2023|consen 81 NSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA 160 (885)
T ss_pred cCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002697 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (891)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~ 243 (891)
..+++++. .+.++-++|+++++++++++.+|..|+.|++.++-..+..+..+++.|++.++.+.+|.+++||+.+|.
T Consensus 161 ~~lds~~~---~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~ 237 (885)
T KOG2023|consen 161 QFLDSDVL---TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCR 237 (885)
T ss_pred HHHhhhcc---cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 88877654 478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhh
Q 002697 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (891)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~ 323 (891)
+|+.+.+..++.+.||++.++++|++..++.|++|..+|+|||.++++.+.....+.||+++++|.++..|.|+++|+-.
T Consensus 238 alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~L 317 (885)
T KOG2023|consen 238 ALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIIL 317 (885)
T ss_pred HHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hh-hcccCCCCCCCCCCCcccccccCCCCC-------CCCC--CCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHH
Q 002697 324 VE-AEEDESLPDRDQDLKPRFHSSRLHGSE-------NPED--DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPV 393 (891)
Q Consensus 324 ~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~-------~~~~--~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~ 393 (891)
.+ .++|+.++|++++|||+|++.+..|.. ++|| ||||...+|+.|+|++.+|+.++..+|+++++.++|+
T Consensus 318 L~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~Pl 397 (885)
T KOG2023|consen 318 LKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPL 397 (885)
T ss_pred hcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence 76 567789999999999999998765441 1221 3445567899999999999999999999999999999
Q ss_pred HHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcc
Q 002697 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (891)
Q Consensus 394 l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 473 (891)
+.+.+.+.+ |.+|++++.++|++++||.+++.+|++.++|++++++.|..|.||..+||+|+|++.|+... ..
T Consensus 398 Lk~~L~~~~---W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~----~~ 470 (885)
T KOG2023|consen 398 LKEHLSSEE---WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD----SR 470 (885)
T ss_pred HHHHcCcch---hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC----Ch
Confidence 999999988 99999999999999999999999999999999999999999999999999999999998753 35
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcc
Q 002697 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (891)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~ 553 (891)
.+++.+++..+++.+-|++++||++||+|+..+-+.+++.+.||+..|+..+..+++.++.+++..+++||++++.++|.
T Consensus 471 ~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH 550 (885)
T ss_pred HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH--HhhcCcccCCC
Q 002697 554 ELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQL--AKVDSVAAGAQ 631 (891)
Q Consensus 554 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~~~~~e 631 (891)
...+|.|++.+||+|++.|+..+++|+++..++||++.++.++|.+|.||.++++++++.++++..+ .+.+.+...+.
T Consensus 551 ~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~ 630 (885)
T KOG2023|consen 551 ALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEA 630 (885)
T ss_pred hcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccC
Confidence 9988999999999999999999999999999999999999999999999999999999999986533 23333333455
Q ss_pred CchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHH
Q 002697 632 YDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAK 711 (891)
Q Consensus 632 ~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 711 (891)
||++++.+++|+++++++++|++.++++.+..+..+++.|++|+.++||+++|.++|++++.|.+.+.|++..+++.+..
T Consensus 631 pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~ 710 (885)
T KOG2023|consen 631 PDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGA 710 (885)
T ss_pred CCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhh
Confidence 79999999999999999999999999998878999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcch
Q 002697 712 QLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHM 791 (891)
Q Consensus 712 ~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 791 (891)
++..+ +.++.+||+||+|+++.+.+..+.+|+..++..|+.+++.+. ..+.+.+|.++++||+...+|+.++|++
T Consensus 711 Nl~~~----~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~-~~~tllENtAITIGrLg~~~Pe~vAp~l 785 (885)
T KOG2023|consen 711 NLNPE----NISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQN-TPKTLLENTAITIGRLGYICPEEVAPHL 785 (885)
T ss_pred cCChh----hchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccC-chHHHHHhhhhhhhhhhccCHHhcchhH
Confidence 88887 789999999999999999999999999999999999998775 3678999999999999999999999999
Q ss_pred hHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChhhhHhhHHHHhhHhhcccccCchhHHHHHHHHHHHHHhhcChhhH
Q 002697 792 EHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAW 871 (891)
Q Consensus 792 ~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 871 (891)
+.++..||..+....|++||..||+|+|+++..||..+...+..+|+++++|.+|. +++++++.+++.++|..+|..+|
T Consensus 786 ~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~-~~l~~~f~kiL~g~k~qvg~~nW 864 (885)
T KOG2023|consen 786 DSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPE-DDLRDEFYKILQGFKNQVGKINW 864 (885)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccChH-HHHHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999865 78999999999999999999899
Q ss_pred HHHHhcCCHHHHHHhhh-cCC
Q 002697 872 DQCMSALEPPVKDKLSK-YQV 891 (891)
Q Consensus 872 ~~~~~~~~~~~~~~L~~-~~~ 891 (891)
+.+..+|||..+.+|+. |||
T Consensus 865 ~~~~~qf~P~~~erl~a~y~v 885 (885)
T KOG2023|consen 865 QRFSEQFPPPLKERLQAFYGV 885 (885)
T ss_pred HHHhhcCChhHHHHHHHHhCC
Confidence 99999999999999955 997
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-81 Score=676.35 Aligned_cols=818 Identities=23% Similarity=0.341 Sum_probs=676.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHH
Q 002697 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (891)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i 94 (891)
+.+.+++++++||||+ +|++||+.|+.....+...+.|.+++.. +.++++|++|++++|+.+.++|+.++.+.++.|
T Consensus 4 ~~l~qLl~~l~spDn~-vr~~Ae~~l~~~~~~~~~l~~L~~i~~~--~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNE-VRRQAEEALETLAKTEPLLPALAHILAT--SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred hHHHHHHHHhcCCCch-HHHHHHHHHHHhhcccchHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 5688999999999999 9999999999865544588889999875 789999999999999999999999999999999
Q ss_pred HHhHhhhhh-cCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCC
Q 002697 95 KSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (891)
Q Consensus 95 ~~~ll~~L~-~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (891)
|..++.++. ++.+.||++.|.+++.|++.+.+..||+++++|.++.+|+++..|+.|+.+|..+.+.++..+.
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~------ 154 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ------ 154 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc------
Confidence 999999776 6789999999999999999987779999999999999999999999999999999998877543
Q ss_pred CCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccc--hhhHHhHHHHHH----HHHHhhCCCCHHHHHHHHHHHHH
Q 002697 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SALFVSMDQYLQ----GLFLLSNDPSAEVRKLVCAAFNL 247 (891)
Q Consensus 174 ~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~--~~~~~~~~~~l~----~l~~~~~~~~~~v~~~~~~~l~~ 247 (891)
.++..+.+.|.+.+++++..||..|+++++.++...+ .....++..++| .+-..+.+.+.+..+.++++|..
T Consensus 155 --~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 155 --PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred --hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 3568899999999999977799999999999998875 334444444444 44445566777888999999999
Q ss_pred HHhhChhhhhHhHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHhhcc-CCchhhHHhhhhhhHHHHHhhccCChhhhhhh
Q 002697 248 LIEVRPSFLEPHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEA-QLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (891)
Q Consensus 248 l~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~ 324 (891)
+++..|+.+.+++.+++++++....+ .++.+|..|++|+..++++ +...+...++.+.+++.++..|+.-++|.+|.
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 99999999999999999999988654 5788999999999999988 33334445688999999999999777764433
Q ss_pred hhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCc-chhhhhHHHHHHhhccCCC
Q 002697 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGD 403 (891)
Q Consensus 325 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~ 403 (891)
++| +.|+||+ -+....|.+++++++.++|+ .++|.+++.+..++++++
T Consensus 313 ~~d-------------------------~~ded~~-----~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~- 361 (1075)
T KOG2171|consen 313 NED-------------------------DLDEDDE-----ETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTE- 361 (1075)
T ss_pred ccc-------------------------ccccccc-----cCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCC-
Confidence 321 1221221 13578899999999999975 789999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHH
Q 002697 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (891)
Q Consensus 404 ~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 483 (891)
|+.|+||+++++.+++||.+.+...+++|++.+++.++||||+||.+||.++|++++.+++. ....+.+.+.+.
T Consensus 362 --w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~----iqk~~~e~l~~a 435 (1075)
T KOG2171|consen 362 --WKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE----IQKKHHERLPPA 435 (1075)
T ss_pred --HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH----HHHHHHHhccHH
Confidence 99999999999999999999999999999999999999999999999999999999998764 345556667778
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHHHh-cccchHhHHHHHHH-HHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhh
Q 002697 484 LLKRILDT-NKRVQEAACSAFATLEEEA-AEELAPRLEIILQH-LMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVY 560 (891)
Q Consensus 484 l~~~l~d~-~~~v~~~a~~al~~l~~~~-~~~~~~~l~~il~~-l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~ 560 (891)
++..+.++ +++|+.+|+.|+.+|.+.| ++.+.||++.++++ +..++++.+..+++.+..+|++++.+.+..|. +|
T Consensus 436 L~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~--pY 513 (1075)
T KOG2171|consen 436 LIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI--PY 513 (1075)
T ss_pred HHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH--hH
Confidence 88888775 5799999999999999998 77889999999995 44455666777888999999999999999998 99
Q ss_pred hhhhhHHHHHHHHcCCCCC-cch-HhHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHH------------------
Q 002697 561 LDILMPPLIAKWQQLPNSD-KDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQ------------------ 619 (891)
Q Consensus 561 ~~~l~~~l~~~l~~~~~~~-~~~-~~~~~~l~~i~~~~~~-~~~~~~~~i~~~l~~~l~~~~------------------ 619 (891)
++.+||.|.+.+++..+++ +.+ ...++|++.++.++|+ .|.|+.+++++.+...-.+..
T Consensus 514 ~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 514 FDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHH
Confidence 9999999999999876444 334 6789999999999995 777777777666554310000
Q ss_pred --------------------HHhhcC-------------------------cc-------c-------------------
Q 002697 620 --------------------LAKVDS-------------------------VA-------A------------------- 628 (891)
Q Consensus 620 --------------------~~~~~~-------------------------~~-------~------------------- 628 (891)
..+.++ +. .
T Consensus 594 ~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~l 673 (1075)
T KOG2171|consen 594 RILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKEL 673 (1075)
T ss_pred HHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhh
Confidence 000000 00 0
Q ss_pred --------------------------------------------------------------------------------
Q 002697 629 -------------------------------------------------------------------------------- 628 (891)
Q Consensus 629 -------------------------------------------------------------------------------- 628 (891)
T Consensus 674 k~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~v 753 (1075)
T KOG2171|consen 674 KEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEI 753 (1075)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence
Q ss_pred -----------------------------------------------CC-----------CCchhHHHHHhhhHHHHHHH
Q 002697 629 -----------------------------------------------GA-----------QYDKEFVVCCLDLLSGLAEG 650 (891)
Q Consensus 629 -----------------------------------------------~~-----------e~d~~~~~~~~~~l~~l~~~ 650 (891)
.+ |.|..+...+.+.+..+++.
T Consensus 754 l~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~ 833 (1075)
T KOG2171|consen 754 LESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKA 833 (1075)
T ss_pred HHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 00 01223445566778888888
Q ss_pred HhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHH
Q 002697 651 LGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACW 730 (891)
Q Consensus 651 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~ 730 (891)
.++.|.+.+.+ +.|.+...+......-|+.|+.++++++.+++++..+|.+.++|.+...+.++ .++||++|++
T Consensus 834 ~k~~f~p~f~~--~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~----~pEVRqaAsY 907 (1075)
T KOG2171|consen 834 LKGSFLPFFEN--FLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDS----DPEVRQAAAY 907 (1075)
T ss_pred ccccccHHHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCC----CHHHHHHHHH
Confidence 88889898887 88888888876655559999999999999999999999999999999999999 7899999999
Q ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhh---hhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccCCCC
Q 002697 731 AIGELAVKARQEISPIVMTVVLCLVPILKHSEEL---NKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRD 807 (891)
Q Consensus 731 alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 807 (891)
++|.++.+.+..+.|.+...++.|..++..+... +...++|++++++|++..++..+. ++++++.|+++||..+|
T Consensus 908 GiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~--vdqvl~~~l~~LPl~~D 985 (1075)
T KOG2171|consen 908 GMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIP--VDQVLPAWLSWLPLKED 985 (1075)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc--HHHHHHHHHHhCCCccc
Confidence 9999999999998898988898888888776532 457889999999999999999874 99999999999999999
Q ss_pred chHHHHHHHHHHHHHhhChhhhHh----hHHHHhhHhhcccccCchhHHHHHHHHHHHHHhhc-ChhhHHHHHhcCCHHH
Q 002697 808 DTEKEDAFRGLCAMVKANPSGALS----SLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQML-RNGAWDQCMSALEPPV 882 (891)
Q Consensus 808 ~~e~~~~~~~l~~l~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~ 882 (891)
.+|....+..|+.|++.|++.+.. ++|.|+.+++.--....-+..+...+++..+|+.. +++.|.+.++++|++.
T Consensus 986 ~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~~~~~~~~~~~~L~~~~ 1065 (1075)
T KOG2171|consen 986 KEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVCAESLADKKIEPRSTLARVIEILKQFLAPPSQFAALLATLPPDQ 1065 (1075)
T ss_pred hhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHHHhhhhccCCCccchHHHHHHHHHHHhcCHHHHHHHHHhCCHHH
Confidence 999999999999999999988884 78999888876211000011122235666666554 3468999999999999
Q ss_pred HHHhhh-cC
Q 002697 883 KDKLSK-YQ 890 (891)
Q Consensus 883 ~~~L~~-~~ 890 (891)
++.|++ ++
T Consensus 1066 ~~~lq~~~~ 1074 (1075)
T KOG2171|consen 1066 QQALQAVLN 1074 (1075)
T ss_pred HHHHHHHhc
Confidence 999977 54
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-63 Score=508.33 Aligned_cols=739 Identities=24% Similarity=0.369 Sum_probs=595.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhH-----------Hhh
Q 002697 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (891)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i-----------~~~ 82 (891)
++.++|..++|||.+ +|++|+++|+++.. .|.|...|..+|++. ..+...|..|++.|||.+ ..+
T Consensus 2 ~~~~~le~tlSpD~n-~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~-~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qR 79 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQN-VRKRAEKQLEQAQSQNFPQFLVLLSEVLAND-NSSDVARMAAGLQLKNSLTAKDPERKQQYQQR 79 (859)
T ss_pred cHHHHHHHHcCCCcc-hHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-CCcHHHHHHHhHHHhhhhccCCHHHHHHHHHH
Confidence 467888899999999 99999999999864 689999999999964 678899999999999998 348
Q ss_pred hccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhc-ccCchHHHHHHHHHHhccCCh-hHHhHHHHHHHHHHh
Q 002697 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICE 160 (891)
Q Consensus 83 w~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~-~~~~w~~ll~~L~~~l~~~~~-~~r~~al~~L~~l~~ 160 (891)
|-.++.+.|+++|..+++.|+++.+..++.++++++.||..+ |.+.||+|++.+.....++.+ .++++++.+++.+|+
T Consensus 80 Wl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice 159 (859)
T KOG1241|consen 80 WLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICE 159 (859)
T ss_pred HHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998 678999999999999988765 489999999999999
Q ss_pred hchhccccCCCCCCCcchhhhHHHHHHhhcC--CCHHHHHHHHHHHHHHhcccchhhHHhH--HHHHHHHHHhhCCCCHH
Q 002697 161 DIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAE 236 (891)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~ 236 (891)
+..+... +...+.++..++++... ++..||.+|+++|...+++....|.... +-+|+.++...+.++.+
T Consensus 160 ~i~pevl-------~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~ 232 (859)
T KOG1241|consen 160 DIDPEVL-------EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEE 232 (859)
T ss_pred cCCHHHH-------HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHH
Confidence 8876421 23457788888888875 5779999999999999887654454333 23578888888899999
Q ss_pred HHHHHHHHHHHHHhhChhhhhHhHHH-HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC-----------------chhh
Q 002697 237 VRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFEAQL-----------------PHEN 298 (891)
Q Consensus 237 v~~~~~~~l~~l~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~-----------------~~~~ 298 (891)
++..++.||+.+...+++++.+|+.+ ++...+..+.+.+++|...++|||.++++.+. ....
T Consensus 233 i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~f 312 (859)
T KOG1241|consen 233 IQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYF 312 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHH
Confidence 99999999999999999999999986 89999999999999999999999999887621 1233
Q ss_pred HHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 002697 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (891)
Q Consensus 299 ~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l 378 (891)
.+..++.++|.+++.+...++ ++||| +|++.++|..||..+
T Consensus 313 a~~a~~~v~P~Ll~~L~kqde-----------------------------------~~d~D----dWnp~kAAg~CL~l~ 353 (859)
T KOG1241|consen 313 ARQALQDVVPVLLELLTKQDE-----------------------------------DDDDD----DWNPAKAAGVCLMLF 353 (859)
T ss_pred HHHHHhHhhHHHHHHHHhCCC-----------------------------------Ccccc----cCcHHHHHHHHHHHH
Confidence 444566788888877764321 11222 499999999999999
Q ss_pred HHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHH
Q 002697 379 SNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (891)
Q Consensus 379 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 457 (891)
++..|++++++++|++.+.+++++ |+.|++|.+++|.+-++.. +.+.+..++.+|.++..+.|++-.||.++.|++
T Consensus 354 A~~~~D~Iv~~Vl~Fiee~i~~pd---wr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtl 430 (859)
T KOG1241|consen 354 AQCVGDDIVPHVLPFIEENIQNPD---WRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTL 430 (859)
T ss_pred HHHhcccchhhhHHHHHHhcCCcc---hhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHH
Confidence 999999999999999999999999 9999999999999998765 456789999999999999999999999999999
Q ss_pred HhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc---------ccchHhHHHHHHHHHHH
Q 002697 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA---------EELAPRLEIILQHLMMA 528 (891)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~---------~~~~~~l~~il~~l~~~ 528 (891)
|+++++++..+ ....+...+++.+++.+.| +++|...+||++..+++.+. +...|+++.|+..|++.
T Consensus 431 grI~d~l~e~~---~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~ 506 (859)
T KOG1241|consen 431 GRIADFLPEAI---INQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV 506 (859)
T ss_pred HHHHhhchhhc---ccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh
Confidence 99999988653 3567788999999999998 59999999999999998762 13457999999999988
Q ss_pred Hcccc--h-hHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcC------CCCCcc----h-HhHHHHHHHHHH
Q 002697 529 FGKYQ--R-RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL------PNSDKD----L-FPLLECFTSIAQ 594 (891)
Q Consensus 529 l~~~~--~-~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~------~~~~~~----~-~~~~~~l~~i~~ 594 (891)
-...+ . ..+..++++++.+++...+... +....+...++.++.+. +.+++. + ..++.+++.+.+
T Consensus 507 tdr~dgnqsNLR~AAYeALmElIk~st~~vy--~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~r 584 (859)
T KOG1241|consen 507 TDRADGNQSNLRSAAYEALMELIKNSTDDVY--PMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIR 584 (859)
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCcHHHH--HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 76643 2 3455899999999998877654 44444444444444321 112222 3 357789999999
Q ss_pred HhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhc-
Q 002697 595 ALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM- 673 (891)
Q Consensus 595 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~- 673 (891)
.+|..+.++.+.++..++++++... ...+-..++-+++++++.+|.+|..|++. |.|++...++
T Consensus 585 k~~~~~~~~~d~iM~lflri~~s~~-------------s~~v~e~a~laV~tl~~~Lg~~F~kym~~--f~pyL~~gL~n 649 (859)
T KOG1241|consen 585 KVGSDIREVSDQIMGLFLRIFESKR-------------SAVVHEEAFLAVSTLAESLGKGFAKYMPA--FKPYLLMGLSN 649 (859)
T ss_pred HccccchhHHHHHHHHHHHHHcCCc-------------cccchHHHHHHHHHHHHHHhHhHHHHHHH--HHHHHHHHhhc
Confidence 9999999999999999999988621 11122346777999999999999999986 9999999994
Q ss_pred CCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhHHHHHHHH
Q 002697 674 DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLC 753 (891)
Q Consensus 674 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~ 753 (891)
..+..|..+|++++|++++.+++.+.||.+.++..|+++|+++..++ +||-....++|+|+...|.+|.+|+..++..
T Consensus 650 ~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR--~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~l 727 (859)
T KOG1241|consen 650 FQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHR--NVKPAILSVFGDIALAIGADFEPYLEMVMPL 727 (859)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999998866 8999999999999999999999999999977
Q ss_pred HHHHhcC---Ch-----hhhhhHHHhHHHHHhhhhhh-----cCCccCcchhHHHHHHHhhccCCCCchHHH--HHHHHH
Q 002697 754 LVPILKH---SE-----ELNKSLIENSAITLGRLAWV-----CPELVSPHMEHFMQPWCIALSMIRDDTEKE--DAFRGL 818 (891)
Q Consensus 754 l~~~l~~---~~-----~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~~~~l~~~~~~l~~~~~~~e~~--~~~~~l 818 (891)
+...-+- +. .....+|+++..+..-++.. -+..+.||++.++..+-+.-.. .+.++.. .+...+
T Consensus 728 lq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e-~~~~~~~~~~a~GlI 806 (859)
T KOG1241|consen 728 LQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAE-PDVSEALHAAALGLI 806 (859)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHH
Confidence 6655411 10 01356778776666444432 2334557777776655433322 3333322 233335
Q ss_pred HHHHhhChhhh
Q 002697 819 CAMVKANPSGA 829 (891)
Q Consensus 819 ~~l~~~~~~~~ 829 (891)
-.|+...+..+
T Consensus 807 gDL~~~fg~~~ 817 (859)
T KOG1241|consen 807 GDLATMFGKGV 817 (859)
T ss_pred HHHHHHcccch
Confidence 55555555443
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.8e-52 Score=412.16 Aligned_cols=737 Identities=16% Similarity=0.213 Sum_probs=561.8
Q ss_pred HHHHHHHH-hcCCCCHHHHHHHHHHHHHHhc--CCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhH-----------Hh
Q 002697 16 EICRLLEQ-QISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RT 81 (891)
Q Consensus 16 ~l~~~l~~-~~s~d~~~~r~~a~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i-----------~~ 81 (891)
++.++.++ .+|||++ .|..||.+|.++.+ ...|+..+.+.+++. +..+..|..|++.|||.+ ..
T Consensus 5 ef~~l~~n~vLspD~n-~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~-ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~q 82 (858)
T COG5215 5 EFRCLGKNHVLSPDPN-ARLRAEAQLLELQSGDFEQFISLLVQVLCDL-NSNDQLRMVAGLILKNSLHANDPELQKGCSQ 82 (858)
T ss_pred HHHHHHhcccCCCCCC-ccccHHHHHHHhccccHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 45556655 4899999 99999999999875 345777888888854 678999999999999998 35
Q ss_pred hhccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhc-ccCchHHHHHHHHHHhccCCh-hHHhHHHHHHHHHH
Q 002697 82 AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKIC 159 (891)
Q Consensus 82 ~w~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~-~~~~w~~ll~~L~~~l~~~~~-~~r~~al~~L~~l~ 159 (891)
+|-.++.+.|+++|...++.|.++.+.....++++++.|++.+ +.+.||+|+..+.....++.| ..+..++.+++.+|
T Consensus 83 rW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 83 RWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred hhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999998 678999999999999988765 67778999999999
Q ss_pred hhchhc-cccCCCCCCCcchhhhHHHHHHhhcC--CCHHHHHHHHHHHHHHhcccchhhHH--hHHHHHHHHHHhhCCCC
Q 002697 160 EDIPQV-LDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLLSNDPS 234 (891)
Q Consensus 160 ~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~~ 234 (891)
+...+. +.. ..+.++-.++.+-.. ++..+|.+|+++|..-+.+....|.. .-+-+++.+....+.++
T Consensus 163 es~~Pe~li~--------~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d 234 (858)
T COG5215 163 ESEAPEDLIQ--------MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND 234 (858)
T ss_pred hccCHHHHHH--------HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc
Confidence 976552 211 124444445444433 47799999999998855544333321 12345788888888899
Q ss_pred HHHHHHHHHHHHHHHhhChhhhhHhHHH-HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHH-------------
Q 002697 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK------------- 300 (891)
Q Consensus 235 ~~v~~~~~~~l~~l~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~------------- 300 (891)
.++...++.||..+...+++++.+|+++ +..++.+.+++.+++|...|.|||+++++.+...+.-.
T Consensus 235 ~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f 314 (858)
T COG5215 235 EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF 314 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch
Confidence 9999999999999999999999999984 55667788999999999999999999988743322222
Q ss_pred --hhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 002697 301 --EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (891)
Q Consensus 301 --~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l 378 (891)
....+++|.++..+....+| .++ ++|++.++|..||..+
T Consensus 315 a~aav~dvlP~lL~LL~~q~ed-----------------------------------~~~----DdWn~smaA~sCLqlf 355 (858)
T COG5215 315 ARAAVADVLPELLSLLEKQGED-----------------------------------YYG----DDWNPSMAASSCLQLF 355 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-----------------------------------ccc----cccchhhhHHHHHHHH
Confidence 22445777777666543221 121 2599999999999999
Q ss_pred HHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhh-hhhhHHHHHHHHhhhcCCCChHHHHHHHHHH
Q 002697 379 SNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (891)
Q Consensus 379 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~-~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 457 (891)
++..|+.++..++.++.+.+++++ |..|++|.+++|.+.++..+. +.++.++.+|.+.....|+.-.|+.+++||+
T Consensus 356 aq~~gd~i~~pVl~FvEqni~~~~---w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~ 432 (858)
T COG5215 356 AQLKGDKIMRPVLGFVEQNIRSES---WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCF 432 (858)
T ss_pred HHHhhhHhHHHHHHHHHHhccCch---hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHH
Confidence 999999999999999999999998 999999999999999887654 4688999999999999999999999999999
Q ss_pred HhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc-------ccchHhHHHHHHHHHHHHc
Q 002697 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-------EELAPRLEIILQHLMMAFG 530 (891)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-------~~~~~~l~~il~~l~~~l~ 530 (891)
|+++.+++..++| ..++...+...+.++.| ++.+...++|+..+++++.. ..+.++++.|+..|++.-+
T Consensus 433 g~iad~va~~i~p---~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~ 508 (858)
T COG5215 433 GAIADHVAMIISP---CGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTE 508 (858)
T ss_pred HHHHHHHHHhcCc---cccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence 9999999887654 34566777777778877 47788899999999998763 3457788888888887765
Q ss_pred ccch--hHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcC--------CCCCcc----h-HhHHHHHHHHHHH
Q 002697 531 KYQR--RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--------PNSDKD----L-FPLLECFTSIAQA 595 (891)
Q Consensus 531 ~~~~--~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------~~~~~~----~-~~~~~~l~~i~~~ 595 (891)
...+ ..+..++++++.++....+... +.+..+......++.+. ..+|.. + .+.+..+..|.+.
T Consensus 509 ~~~Ne~n~R~s~fsaLgtli~~~~d~V~--~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~ 586 (858)
T COG5215 509 LALNESNLRVSLFSALGTLILICPDAVS--DILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT 586 (858)
T ss_pred hhccchhHHHHHHHHHHHHHhhcchhHH--HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4322 3355889999999988776655 44444444444443321 112221 2 4567788888888
Q ss_pred hccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCC
Q 002697 596 LGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDD 675 (891)
Q Consensus 596 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 675 (891)
.+..+.+-.++++..+++++++... .....-++.+++.+..++++.|+.|++. +.|++.+.++..
T Consensus 587 ~~~~ie~v~D~lm~Lf~r~les~~~-------------t~~~~dV~~aIsal~~sl~e~Fe~y~~~--fiPyl~~aln~~ 651 (858)
T COG5215 587 RRRDIEDVEDQLMELFIRILESTKP-------------TTAFGDVYTAISALSTSLEERFEQYASK--FIPYLTRALNCT 651 (858)
T ss_pred cCCCcccHHHHHHHHHHHHHhccCC-------------chhhhHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHhcch
Confidence 8888889999999999998885411 1112235667999999999999999987 999999999888
Q ss_pred ChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhHHHHHHHHHH
Q 002697 676 ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLV 755 (891)
Q Consensus 676 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~ 755 (891)
+..+...|++++|++++.++.+|.+|-+.++..+.++++++..++ ++|-....++|+|+...|.+|.+|++.|+-.+.
T Consensus 652 d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R--~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~q 729 (858)
T COG5215 652 DRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHR--DLKPAILSVFGDIALAIGANFESYLDMIMMLFQ 729 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhcc--ccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987755 888999999999999999999999999886554
Q ss_pred HHhcCCh-h--h-hhhHHHh-------HHHHHhhhhhhcCCccCcchhHHHHHHHhhccCCCCchH-HHHHHHHHHHHHh
Q 002697 756 PILKHSE-E--L-NKSLIEN-------SAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTE-KEDAFRGLCAMVK 823 (891)
Q Consensus 756 ~~l~~~~-~--~-~~~~~~~-------~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~e-~~~~~~~l~~l~~ 823 (891)
..-+-.. . . ..+.+.+ +...++.-.+..++.+.||+..++..+-..-.+..-.+. ...++..+-.+..
T Consensus 730 qas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~ 809 (858)
T COG5215 730 QASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAG 809 (858)
T ss_pred HHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHH
Confidence 4432211 0 0 1122333 223333333444566677777666655433333222111 2233333455555
Q ss_pred hChh
Q 002697 824 ANPS 827 (891)
Q Consensus 824 ~~~~ 827 (891)
..|.
T Consensus 810 mfpk 813 (858)
T COG5215 810 MFPK 813 (858)
T ss_pred hCCC
Confidence 5553
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-43 Score=371.95 Aligned_cols=772 Identities=19% Similarity=0.275 Sum_probs=543.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhcc--------
Q 002697 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-------- 85 (891)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~-------- 85 (891)
.+.+.+++.++.++|++ .|+.||++|+++.+.|+|...+++|+.++ +.+..+||.|++.|||.|.+.|+.
T Consensus 3 ~~~l~~~~~~T~d~d~~-~R~~AE~~L~q~~K~pgFv~~lLqIi~~d-~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAK-ERKAAEQQLNQLEKQPGFVSSLLQIIMDD-GVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred hHHHHHHHHHhcCCChH-HHHHHHHHHHHhhcCCcHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 35789999999999999 99999999999999999999999999865 788899999999999999999985
Q ss_pred -CChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 002697 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (891)
Q Consensus 86 -~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (891)
+.++.|..+|+.++..+...+..+|.+...++-.|.+.+.|+.||++++.+...+++++.....+|+.+|..+++....
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999899999999999999999999999999999999999999999999999999999997653
Q ss_pred ccccCCCCCCCcchhhhHHHHH----HhhcCC---CHHHHHHHHHHHHHHhcc-cchhhH--HhHHHHHHHHHHhhCCC-
Q 002697 165 VLDSDVPGLAECPINIFLPRLL----QFFQSP---HTSLRKLSLGSVNQFIML-MPSALF--VSMDQYLQGLFLLSNDP- 233 (891)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~----~~l~~~---~~~vr~~al~~l~~~~~~-~~~~~~--~~~~~~l~~l~~~~~~~- 233 (891)
....+ +..+...+..++|.++ +++..+ +..+.+..++++..++.+ +|..+. ..+..+++.....++-+
T Consensus 161 k~~ee-R~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpv 239 (1010)
T KOG1991|consen 161 KKDEE-RQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPV 239 (1010)
T ss_pred ccccc-cccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCC
Confidence 32221 1212233444455544 444444 346778888888887754 454333 23444455444443311
Q ss_pred -------C---------HHHHHHHHHHHHHHHhhChhh---------h-----hHhHHHHHHHHHhhcC------CCCHH
Q 002697 234 -------S---------AEVRKLVCAAFNLLIEVRPSF---------L-----EPHLRNLFEYMLQVNK------DTDDD 277 (891)
Q Consensus 234 -------~---------~~v~~~~~~~l~~l~~~~~~~---------~-----~~~l~~l~~~~~~~~~------~~~~~ 277 (891)
+ ..+++.++-.+..+.+.+.+. | ..+...+.+..++.+. --.++
T Consensus 240 P~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~r 319 (1010)
T KOG1991|consen 240 PVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDR 319 (1010)
T ss_pred ChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 1 246678888888887765422 1 1223333333333221 13566
Q ss_pred HHHHHHHHHHHhhccCCchhhHHhhhhhhHHHH-HhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCC
Q 002697 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (891)
Q Consensus 278 v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l-l~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 356 (891)
+-..++.|+..++.....++.++|++..++... ++.|+++++|++.|++||. +|+|-.|. -.+
T Consensus 320 vl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~-------EYiR~~~D--------i~e- 383 (1010)
T KOG1991|consen 320 VLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPY-------EYIRKKFD--------IFE- 383 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHH-------HHHHhcCc--------hhc-
Confidence 778889999998888778999999999998765 5999999999999998876 46664431 121
Q ss_pred CCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhcc-----CCCcchHHHHHHHHHHHHHhhcchh--hhhh
Q 002697 357 DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIK--GLYP 429 (891)
Q Consensus 357 ~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~r~aa~~~l~~l~~~~~~--~~~~ 429 (891)
+..+++.+|..++..++...|++.++.+++++.+.+++ ....+++.+++|+.++|++++-..+ .++.
T Consensus 384 ------d~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~ 457 (1010)
T KOG1991|consen 384 ------DGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS 457 (1010)
T ss_pred ------ccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH
Confidence 13467899999999999999999999999999888872 2234599999999999999965543 2234
Q ss_pred hHHH-HHHHHhhhcCCCChHHHHHHHHHHHhhHH-HHhhhhCCCcchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 002697 430 HLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSK-FIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATL 506 (891)
Q Consensus 430 ~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~l~-d~~~~v~~~a~~al~~l 506 (891)
.++. +++++++.++++...+|.+|||.++++++ .+. ....+.+.+....++|. |++-.||..|+.||..|
T Consensus 458 ~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~-------d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~f 530 (1010)
T KOG1991|consen 458 QMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK-------DPNNLSEALELTHNCLLNDNELPVRVEAALALQSF 530 (1010)
T ss_pred HHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC-------ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHH
Confidence 4444 67889999999999999999999999994 332 56778899999999998 77889999999999999
Q ss_pred HHHhc---ccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHH----HHHcCCCC-
Q 002697 507 EEEAA---EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIA----KWQQLPNS- 578 (891)
Q Consensus 507 ~~~~~---~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~----~l~~~~~~- 578 (891)
+.++. +.+.+|++.+|+.++++.+..+.+.+. .++..++...+++.. ||...++..|.+ .++...++
T Consensus 531 I~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt---~vme~iV~~fseEls--PfA~eL~q~La~~F~k~l~~~~~~~ 605 (1010)
T KOG1991|consen 531 ISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT---NVMEKIVCKFSEELS--PFAVELCQNLAETFLKVLQTSEDED 605 (1010)
T ss_pred HhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH---HHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHhccCCCC
Confidence 99875 459999999999999999988777665 445556666777766 777776665554 44432211
Q ss_pred ----Ccch--HhHHHHHHHHHHHhcc--ccccchHHH-HHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHH
Q 002697 579 ----DKDL--FPLLECFTSIAQALGA--GFTQFAQPV-FQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAE 649 (891)
Q Consensus 579 ----~~~~--~~~~~~l~~i~~~~~~--~~~~~~~~i-~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~ 649 (891)
++.+ ..++.++.++...+.. +...+++++ ++.+-.++.+.. .++-..+++....+.-
T Consensus 606 ~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i--------------~dfyeE~~ei~~~~t~ 671 (1010)
T KOG1991|consen 606 ESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI--------------TDFYEELLEIVSSLTF 671 (1010)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHhhhhh
Confidence 2222 3455566666665554 233333332 333333444322 1222233333333222
Q ss_pred HHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhH---HhHHHHHHHHHHhcCCCCCcCchhHhh
Q 002697 650 GLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ---ARLSDFLDIAAKQLNTPKLKETVSVAN 726 (891)
Q Consensus 650 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~~~v~~ 726 (891)
.. ..+.|-+-+ +++++.+++++...+--....-++.+++......+. .|+..++..+.+.+.+++..+ .-+.
T Consensus 672 ~~-~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D--~d~~ 746 (1010)
T KOG1991|consen 672 LS-KEISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGED--SDCE 746 (1010)
T ss_pred hh-cccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCch--HHHH
Confidence 21 223344433 888888888776655555556666666655544443 366778888888888764322 4467
Q ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccC------cchhHHHHHHHh
Q 002697 727 NACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVS------PHMEHFMQPWCI 800 (891)
Q Consensus 727 ~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------~~~~~~l~~~~~ 800 (891)
.|+..++.++..+++.+..|++..++..+..+..... ....+-.+...+.....++|.... .+...+.+.|++
T Consensus 747 ~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e-~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~ 825 (1010)
T KOG1991|consen 747 SACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVE-TSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQ 825 (1010)
T ss_pred HHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHH
Confidence 7899999999999888888888888877777766321 223333333333333344444321 234457777887
Q ss_pred hccCCCCchHHHHHHHHHHHHHhhC--hhhhHhhHHHHhhHhhc
Q 002697 801 ALSMIRDDTEKEDAFRGLCAMVKAN--PSGALSSLVFMCRAIAS 842 (891)
Q Consensus 801 ~l~~~~~~~e~~~~~~~l~~l~~~~--~~~~~~~l~~~~~~~~~ 842 (891)
.+......+.|+..+.+++.++... |+...+.+.++..++..
T Consensus 826 ~~~~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~ 869 (1010)
T KOG1991|consen 826 FINQFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVE 869 (1010)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 7766555678899999999999983 44444555566555543
No 6
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-38 Score=330.82 Aligned_cols=810 Identities=17% Similarity=0.237 Sum_probs=549.7
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhcc------
Q 002697 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS------ 85 (891)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~------ 85 (891)
..++++.+.|.+.++||+. +||.||..|++...+++|...+++++.+ ++.++.+|..|++.+||.++++|..
T Consensus 2 ~~le~l~~~l~qTl~pdps-~rk~aEr~L~~~e~q~~y~l~lL~Lv~~-~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 2 ANLETLANYLLQTLSPDPS-VRKPAERALRSLEGQQNYPLLLLNLVAN-GQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred ccHHHHHHHHHhcCCCCCc-cCchHHHHHHHhccCCCchHHHHHHHhc-cCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 3578999999999999999 9999999999999999999999999985 4779999999999999999999963
Q ss_pred -CChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 002697 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (891)
Q Consensus 86 -~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (891)
+.+++++.||..++..+-+....+..+++++++.|++.++|+.||.|++.|...++++|-.+..+.+.+-.++++.+..
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ 159 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRP 159 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCc
Confidence 6778999999999999999999999999999999999999999999999999999999988888888888889998877
Q ss_pred ccccCCCCCC----------CcchhhhHHHHHHhhcC--CCHH-------HHHHHHHHHHHHh-cccchhhHHhHHHHHH
Q 002697 165 VLDSDVPGLA----------ECPINIFLPRLLQFFQS--PHTS-------LRKLSLGSVNQFI-MLMPSALFVSMDQYLQ 224 (891)
Q Consensus 165 ~~~~~~~~~~----------~~~~~~l~~~l~~~l~~--~~~~-------vr~~al~~l~~~~-~~~~~~~~~~~~~~l~ 224 (891)
.+.++ +++ ...+..++.......+. .+.. +....++.+.++. ..+|+.|..+++.+|+
T Consensus 160 efrSd--aL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~ 237 (960)
T KOG1992|consen 160 EFRSD--ALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMG 237 (960)
T ss_pred ccccH--HHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHH
Confidence 65543 111 01112222222222211 1211 2223333443332 3467888899999999
Q ss_pred HHHHhhCCC-------C------HHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCC-----CCHHHHHHHHHHH
Q 002697 225 GLFLLSNDP-------S------AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-----TDDDVALEACEFW 286 (891)
Q Consensus 225 ~l~~~~~~~-------~------~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~v~~~a~~~l 286 (891)
...+++.-+ + .++|..+|+.+...+..+++.|.+++++++..++..+.+ ..+.....|++|+
T Consensus 238 ~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FL 317 (960)
T KOG1992|consen 238 AFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFL 317 (960)
T ss_pred HHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 888876511 1 357889999999999999999999999999888877543 2345677889999
Q ss_pred HHhhccCCchhhH--HhhhhhhHHHH-HhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccc
Q 002697 287 HSYFEAQLPHENL--KEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVN 363 (891)
Q Consensus 287 ~~l~~~~~~~~~~--~~~l~~li~~l-l~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~ 363 (891)
..+++.+...+.+ ...+.++...+ ++.+...++|.|.+|+++. +|+|. |.|+.|-|
T Consensus 318 t~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pl-------eYiRR-----------DlEGsDvd--- 376 (960)
T KOG1992|consen 318 TSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPL-------EYIRR-----------DLEGSDVD--- 376 (960)
T ss_pred HHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHH-------HHHHH-----------hcccCCcc---
Confidence 9998864332222 24455555544 4778888889888877654 35552 22222222
Q ss_pred cccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhc----cCCCcchHHHHHHHHHHHHHhhcch---------hhhh--
Q 002697 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS----ASGDEAWKDREAAVLALGAIAEGCI---------KGLY-- 428 (891)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~----~~~~~~~~~r~aa~~~l~~l~~~~~---------~~~~-- 428 (891)
+.|++|...+..|+..+...+.+.+...+...++ ++ +.+|+.+..++..+.+++.... ..+.
T Consensus 377 --TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nP-S~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv 453 (960)
T KOG1992|consen 377 --TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNP-SGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDV 453 (960)
T ss_pred --hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCC-CccccccchhhhhhHHHHhhcchhhcceeeccccccH
Confidence 5799999999999999976666666666666555 22 1339999999999888875421 1111
Q ss_pred -hhH-HHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 002697 429 -PHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (891)
Q Consensus 429 -~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l 506 (891)
.++ ..+.|.+...-..++|.++..++.-+-.+-..+ .+.++-..+|.+...+..++..|...|+.++..+
T Consensus 454 ~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql--------~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEki 525 (960)
T KOG1992|consen 454 VDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQL--------GKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKL 525 (960)
T ss_pred HHHHHHHhhHHhccCccccccchhhcccceeeeecccC--------ChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhc
Confidence 222 234444444333578899988866544443332 4667888999999999988899999999999988
Q ss_pred HHHh---------cccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCC
Q 002697 507 EEEA---------AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN 577 (891)
Q Consensus 507 ~~~~---------~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 577 (891)
.-.. ...+.||+..++..+++.++.+....-..++.+|..+......... |+.+.+++.|.+.+.....
T Consensus 526 l~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~--p~~~~~l~~Lteiv~~v~K 603 (960)
T KOG1992|consen 526 LTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAII--PHAPELLRQLTEIVEEVSK 603 (960)
T ss_pred cccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhh--hhhhHHHHHHHHHHHHHhc
Confidence 7543 2457889999999999888776554455677888888877777665 7888888888777665433
Q ss_pred --CCcch-HhHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHH
Q 002697 578 --SDKDL-FPLLECFTSIAQALGAG----FTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEG 650 (891)
Q Consensus 578 --~~~~~-~~~~~~l~~i~~~~~~~----~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~ 650 (891)
+++.. ..++|+++.+.+..++. ...+-..++|.+..++.+.. .++.-.++.+++.+++.
T Consensus 604 NPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI--------------~EfiPYvfQlla~lve~ 669 (960)
T KOG1992|consen 604 NPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDI--------------QEFIPYVFQLLAVLVEH 669 (960)
T ss_pred CCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHh
Confidence 23444 67888888888777652 34455556666555565432 24555666667777766
Q ss_pred Hhh----hHHhhhcc-------------chHHHHHHHHhcCCChHH----------------------HHHHHHHHhHHH
Q 002697 651 LGS----GIESLVAQ-------------SNLRDMLLQCCMDDASDV----------------------RQSAFALLGDLA 691 (891)
Q Consensus 651 ~~~----~~~~~~~~-------------~~l~~~l~~~~~~~~~~v----------------------r~~a~~~l~~l~ 691 (891)
.+. .+.++++. |.+..++...++.....+ -+.+|.++..+.
T Consensus 670 ~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~ 749 (960)
T KOG1992|consen 670 SSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTII 749 (960)
T ss_pred cCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHH
Confidence 555 23222211 344444444433221111 146888898888
Q ss_pred Hhch-HhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHHhcCChhh-----
Q 002697 692 RVCP-VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA-RQEISPIVMTVVLCLVPILKHSEEL----- 764 (891)
Q Consensus 692 ~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~-~~~~~~~~~~il~~l~~~l~~~~~~----- 764 (891)
..++ ..+.||+.+++-.+++.+++++ .+......+..++....+. +..+...++.|.+.++.++...-..
T Consensus 750 ~~~~~~~~~py~k~i~~llf~Rlqnsk---T~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg~l~e~~ii~~l~~ 826 (960)
T KOG1992|consen 750 ESIPPNELAPYMKQIFGLLFQRLQNSK---TEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQPGMFGMLLENFIIPELPK 826 (960)
T ss_pred hcCCHhhhhHHHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHHHHHHhccccchh
Confidence 8887 4578999999999999999987 4555455555666555444 4456677777777777776543211
Q ss_pred --hhhHHHhHHHHHhhhhhhcCCccCc-c---hhHHHHHHHhhccCC-----CCch------HHHHHHHH-HHHHHhhCh
Q 002697 765 --NKSLIENSAITLGRLAWVCPELVSP-H---MEHFMQPWCIALSMI-----RDDT------EKEDAFRG-LCAMVKANP 826 (891)
Q Consensus 765 --~~~~~~~~~~~l~~l~~~~~~~~~~-~---~~~~l~~~~~~l~~~-----~~~~------e~~~~~~~-l~~l~~~~~ 826 (891)
..--+.-+....++++...++...+ | +..++..+....... .|++ +....|.. |++|...++
T Consensus 827 i~~~~~rk~~avg~~~l~~e~~~~~d~~y~~l~~~ll~sii~lfe~p~~~~~~~e~~e~~~i~e~~~f~~~F~~L~~a~~ 906 (960)
T KOG1992|consen 827 IILRVDRKIMAVGATGLLTETPELLDQKYAKLWGPLLFSIIVLFELPSERTVLDEEEEMAEIEEDPGFQAAFSRLAYAGK 906 (960)
T ss_pred hhhhhhHHHHHHHHhhhhhhcHHhhhHHHHhhhhhHHHHHHHHHhCChhhhccCchhhhhhhhcccchhHHHHHHHcCCC
Confidence 1111222344445555554443311 1 222333333222221 1111 11123433 666665544
Q ss_pred hhhHhhHHHHhhHhhcccccCchhHHHHHHHHHHHHHhhcChhhHHHHH-hcCCHHHHHHhhhcC
Q 002697 827 SGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCM-SALEPPVKDKLSKYQ 890 (891)
Q Consensus 827 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~ 890 (891)
....|. ++..+.|.++.+-+..+.+..|+ .+-+.. +++|++.+..|++|+
T Consensus 907 k~~Dpl-------------~~i~~~k~y~a~sl~~~~~~~~g-~~~~~i~~~l~~e~q~~Lq~~~ 957 (960)
T KOG1992|consen 907 KPHDPL-------------AQIKDPKQYLAQSLNKLSTASPG-RFPQTISTSLPPENQTYLQSYL 957 (960)
T ss_pred CCCCch-------------hhhhhHHHHHHHHHHHHhhcCCC-CchhhhcccCCHHHHHHHHHHh
Confidence 333222 22234788889999999888775 776555 459999999999986
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-37 Score=332.80 Aligned_cols=732 Identities=19% Similarity=0.198 Sum_probs=535.3
Q ss_pred CCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhh-cCChHHHHHHHHHHHHHHhhcccCch----HHHHHHH
Q 002697 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGW----LELLQAL 136 (891)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~-~~~~~vr~~~a~~l~~i~~~~~~~~w----~~ll~~L 136 (891)
+.|.++|.-|--.|. +.|..-+ +...|...+. .+++.+|..+|..+..++.+.|+.-- ..+...|
T Consensus 15 spDn~vr~~Ae~~l~----~~~~~~~------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~l 84 (1075)
T KOG2171|consen 15 SPDNEVRRQAEEALE----TLAKTEP------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSL 84 (1075)
T ss_pred CCCchHHHHHHHHHH----Hhhcccc------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 456678999986664 3444311 4445555665 46999999999888888876322111 2244455
Q ss_pred HHHhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhh
Q 002697 137 VTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL 215 (891)
Q Consensus 137 ~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~ 215 (891)
+..+.++ .+.+|+.-.+++..+++...+. .++++++.+++..+++++..|..|+.+|..+....+..+
T Consensus 85 L~~~~~E~~~~vr~k~~dviAeia~~~l~e-----------~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 85 LEIIQSETEPSVRHKLADVIAEIARNDLPE-----------KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhcccc-----------chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 5555544 6789999999999988865542 358899999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCh--hhhhHhHHHHHHHH----HhhcCCCCHHHHHHHHHHHHHh
Q 002697 216 FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--SFLEPHLRNLFEYM----LQVNKDTDDDVALEACEFWHSY 289 (891)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~--~~~~~~l~~l~~~~----~~~~~~~~~~v~~~a~~~l~~l 289 (891)
.++++.+.+.+.+.++|++..+|..+.++++.++...+ ....+++..++|.+ -....+.|.+....+++.+..+
T Consensus 154 ~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El 233 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIEL 233 (1075)
T ss_pred chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHH
Confidence 99999999999999998877799999999998887653 33334444555544 4455667788889999999999
Q ss_pred hccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHH
Q 002697 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (891)
Q Consensus 290 ~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~ 369 (891)
++. .++.++|++.+++...+......+ .| -..|.
T Consensus 234 ~e~--~pk~l~~~l~~ii~~~l~Ia~n~~-----------------------------------l~---------~~~R~ 267 (1075)
T KOG2171|consen 234 LES--EPKLLRPHLSQIIQFSLEIAKNKE-----------------------------------LE---------NSIRH 267 (1075)
T ss_pred Hhh--chHHHHHHHHHHHHHHHHHhhccc-----------------------------------cc---------HHHHH
Confidence 988 788999999999998876544221 11 03799
Q ss_pred HHHHHHHHHHHHcCc------chhhhhHHHHHHhhccCC-CcchH------------HHHHHHHHHHHHhhcchhhhhhh
Q 002697 370 CSAAALDVLSNVFGD------EILPTLMPVIQAKLSASG-DEAWK------------DREAAVLALGAIAEGCIKGLYPH 430 (891)
Q Consensus 370 ~a~~~l~~l~~~~~~------~~~~~l~~~l~~~l~~~~-~~~~~------------~r~aa~~~l~~l~~~~~~~~~~~ 430 (891)
.|..++..+++..+. ...+.+++.+..++.+.+ ++.|. ....|..++..++.+.+. +..
T Consensus 268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g--~~v 345 (1075)
T KOG2171|consen 268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG--KQV 345 (1075)
T ss_pred HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh--hhe
Confidence 999999998887421 244556666655554311 11132 345677778888776653 346
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 002697 431 LSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (891)
Q Consensus 431 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (891)
++.+++.+-..+.++++.-|.+++.+++.+++++.+. ....++++++.++..++|++++||-+||.|++.+....
T Consensus 346 ~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~-----m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 346 LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDV-----MIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHH-----HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 6778899999999999999999999999999998875 67789999999999999999999999999999999998
Q ss_pred cccchHhHH-HHHHHHHHHHcccch-hHHHHHHHHHHHHHH-HhcccCCchhhhhhhhHHHHHHHHcCCCCCcch-HhHH
Q 002697 511 AEELAPRLE-IILQHLMMAFGKYQR-RNLRIVYDAIGTLAD-AVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLL 586 (891)
Q Consensus 511 ~~~~~~~l~-~il~~l~~~l~~~~~-~~~~~~~~al~~l~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~ 586 (891)
.+.+..+.. .+.+.|...+.+... ++...+..++-.+.+ ..++.+. ||++.+|...+..+.+.+ .+.+ ..++
T Consensus 421 ~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~--pYLd~lm~~~l~~L~~~~--~~~v~e~vv 496 (1075)
T KOG2171|consen 421 QPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE--PYLDGLMEKKLLLLLQSS--KPYVQEQAV 496 (1075)
T ss_pred cHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH--HHHHHHHHHHHHHHhcCC--chhHHHHHH
Confidence 888876554 455577777777655 555555555555554 4555555 899999997777766532 3444 7899
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHh-hhHHhhhccchHH
Q 002697 587 ECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLG-SGIESLVAQSNLR 665 (891)
Q Consensus 587 ~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~l~ 665 (891)
.+++++|.+.+..|.||.+.+++.+.++|.+.. .++.+.+|.+++++++.+..+.| +.|.++-.+ ++
T Consensus 497 taIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~----------~~d~r~LrgktmEcisli~~AVGke~F~~~a~e--li 564 (1075)
T KOG2171|consen 497 TAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD----------DKDLRELRGKTMECLSLIARAVGKEKFLPLAEE--LI 564 (1075)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC----------chhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHH--HH
Confidence 999999999999999999999999999988642 12266788899999999999999 558888876 88
Q ss_pred HHHHHH---hcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCc--------------C--------
Q 002697 666 DMLLQC---CMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLK--------------E-------- 720 (891)
Q Consensus 666 ~~l~~~---~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~--------------~-------- 720 (891)
.+++.. ..+.+...++..+..++.+++.+|++|.||++.++|.+++..+..... +
T Consensus 565 qll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~ 644 (1075)
T KOG2171|consen 565 QLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELG 644 (1075)
T ss_pred HHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccC
Confidence 888776 344566778999999999999999999999999999999876543110 0
Q ss_pred ----------chhHhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhh-------c
Q 002697 721 ----------TVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWV-------C 783 (891)
Q Consensus 721 ----------~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~-------~ 783 (891)
...-|..|+.+||.++...+..|.||+.++++..++.+.-- ++.++|..++.++..++.. +
T Consensus 645 ~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~--fhdgVR~aa~~~~p~ll~~~~~A~~~~ 722 (1075)
T KOG2171|consen 645 DKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFY--FHDGVRKAAAESMPQLLTCALKACQGG 722 (1075)
T ss_pred CceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 12346789999999999999999999999999566665533 4789999999999887742 3
Q ss_pred CCccCcchhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChhhhH--hhHHHHhhHhhc--------ccc--------
Q 002697 784 PELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGAL--SSLVFMCRAIAS--------WHE-------- 845 (891)
Q Consensus 784 ~~~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~--~~l~~~~~~~~~--------~~~-------- 845 (891)
|..+.+.+..+.+..++.+....+.+.-...+++|.+.++.....++ +....+...+.. .+.
T Consensus 723 p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~ee 802 (1075)
T KOG2171|consen 723 PEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEE 802 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 33333334555566666666544444455677788888876332222 222222222211 000
Q ss_pred cC-----------chhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHHh
Q 002697 846 IR-----------SEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKL 886 (891)
Q Consensus 846 ~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 886 (891)
.. ...+.+.+.+++..+.+.+++ .|..+|.++-|..-+.+
T Consensus 803 d~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~-~f~p~f~~~~p~iv~~l 853 (1075)
T KOG2171|consen 803 DDDIEEEEDLDEQDAYLLDAISDILAALAKALKG-SFLPFFENFLPLIVKLL 853 (1075)
T ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHHHHH
Confidence 00 011445666777777777775 78777777777776665
No 8
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=1e-34 Score=305.70 Aligned_cols=741 Identities=18% Similarity=0.249 Sum_probs=521.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhcc---------
Q 002697 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--------- 85 (891)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~--------- 85 (891)
+.+..+|.+++|+|.+ +|.+|+.+|+++...++|..+|..+..+ ...+...||.|.+.||+.|.++|..
T Consensus 4 ~~ii~~L~~~ls~d~~-vr~~AE~~l~qle~~~~f~~aL~~va~~-~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~ 81 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQN-VRSQAETQLKQLELTEGFGVALAEVAAN-KDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPL 81 (1005)
T ss_pred HHHHHHHHhhcCCChh-HHHHHHHHHhccccchHHHHHHHHHHhC-cccCchHHHHHHHHHHHHHHHhCCChHhhccCCC
Confidence 5689999999999999 9999999999999999999999999885 3678899999999999999999985
Q ss_pred -CChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 002697 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (891)
Q Consensus 86 -~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (891)
.+.+.+..||+.+++++.+++..+|+.++.+++.|+..++|+.||++++.+..++.+.|....++|+++|..+..+...
T Consensus 82 ~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ 161 (1005)
T KOG2274|consen 82 IVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDV 161 (1005)
T ss_pred cccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999999999999999999999999998887643
Q ss_pred ccccCCCCCCCcchhhhHHHH---HHhhcCCCHHHHHHH--HHHHHHHhcccc-------hhhH----HhHHHHHHHHHH
Q 002697 165 VLDSDVPGLAECPINIFLPRL---LQFFQSPHTSLRKLS--LGSVNQFIMLMP-------SALF----VSMDQYLQGLFL 228 (891)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l---~~~l~~~~~~vr~~a--l~~l~~~~~~~~-------~~~~----~~~~~~l~~l~~ 228 (891)
...... .+-.++.. +.+....+...|..+ .+.+..+...+. .+.. +-++.++..+-.
T Consensus 162 ee~~~~-------~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h 234 (1005)
T KOG2274|consen 162 EEMFFV-------GPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEH 234 (1005)
T ss_pred HHHhcc-------cccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 211111 12223333 333333444434333 355554443322 1111 223333433333
Q ss_pred hhC--C-CCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhc----------------------CCCCH------H
Q 002697 229 LSN--D-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN----------------------KDTDD------D 277 (891)
Q Consensus 229 ~~~--~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~----------------------~~~~~------~ 277 (891)
.++ + .+...|....+++..+.+..|..+.+++...++..++.. .++++ +
T Consensus 235 ~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~ 314 (1005)
T KOG2274|consen 235 PLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVET 314 (1005)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHH
Confidence 332 2 234678889999999999999988887776666554331 01222 2
Q ss_pred HHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCC
Q 002697 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (891)
Q Consensus 278 v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 357 (891)
.....++|+..++......+.++..++.+++.+..++..+++.++.|.+|+.. ++ .+ +
T Consensus 315 l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~-------fV------------~d---E 372 (1005)
T KOG2274|consen 315 LVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQ-------FV------------AD---E 372 (1005)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHH-------hh------------cc---C
Confidence 34567888888877644455566667888999999999999999999876642 11 01 1
Q ss_pred CccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhcc-------CCCcchHHHHHHHHHHHHHhhcchhhhhhh
Q 002697 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-------SGDEAWKDREAAVLALGAIAEGCIKGLYPH 430 (891)
Q Consensus 358 d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-------~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~ 430 (891)
|+ ..+.|.++...+-.+...+|...+..+.......+.. .+..||+..++.+.+.+....+ +.....
T Consensus 373 d~----~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~--~~~dd~ 446 (1005)
T KOG2274|consen 373 DD----GYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID--DANDDK 446 (1005)
T ss_pred CC----CchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC--cchHHH
Confidence 11 1457788888888888888876555555553333321 2234588888887777666633 122344
Q ss_pred HHHHHHHHhhhcC-CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Q 002697 431 LSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEE 508 (891)
Q Consensus 431 l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-d~~~~v~~~a~~al~~l~~ 508 (891)
+..++..+...+. +..|..-.++.|++++|++... ...+.+..++...+..+. +..+.++..|+.++..++
T Consensus 447 l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~------~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~- 519 (1005)
T KOG2274|consen 447 LIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTV------INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC- 519 (1005)
T ss_pred HHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc-
Confidence 5555555555554 4567777799999999888643 245666777777777665 455778888888887776
Q ss_pred HhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcch-HhHHH
Q 002697 509 EAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLE 587 (891)
Q Consensus 509 ~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~ 587 (891)
..+.+.++.|.++..|.+...+.+..+...++++++.+++.-.+... ..-..+.|..+..+...+ +|+.+ ..+-+
T Consensus 520 -~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a--s~~skI~P~~i~lF~k~s-~DP~V~~~~qd 595 (1005)
T KOG2274|consen 520 -KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA--SMESKICPLTINLFLKYS-EDPQVASLAQD 595 (1005)
T ss_pred -CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh--hhhcchhHHHHHHHHHhc-CCchHHHHHHH
Confidence 34567889999999999999999999999999999998865433322 455678888888777665 56765 44556
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHH
Q 002697 588 CFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDM 667 (891)
Q Consensus 588 ~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~ 667 (891)
|+..+.. ......|+...++|.++++++.... . .-......+++++..+++.-...+.+.+-. ..+|.
T Consensus 596 ~f~el~q-~~~~~g~m~e~~iPslisil~~~~~---------~-~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~Fpa 663 (1005)
T KOG2274|consen 596 LFEELLQ-IAANYGPMQERLIPSLISVLQLNAD---------K-APAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPA 663 (1005)
T ss_pred HHHHHHH-HHHhhcchHHHHHHHHHHHHcCccc---------c-cCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHH
Confidence 6666655 2335677888889999888875320 0 013456678899999998877665544332 25566
Q ss_pred HHHH-hcCCChHHHHHHHHHHhHHHHhchHhhHHh-------HHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHH----
Q 002697 668 LLQC-CMDDASDVRQSAFALLGDLARVCPVHLQAR-------LSDFLDIAAKQLNTPKLKETVSVANNACWAIGEL---- 735 (891)
Q Consensus 668 l~~~-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-------~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l---- 735 (891)
+.+| +++++.+..+.|-.++..++....+.+..| +..+|..+.+.|+.. +...++..+|.+
T Consensus 664 Vak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~-------~sds~a~~VG~lV~tL 736 (1005)
T KOG2274|consen 664 VAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPE-------TSDSAAAFVGPLVLTL 736 (1005)
T ss_pred hHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCc-------cchhHHHHHhHHHHHH
Confidence 6555 466778888889899988888766555544 347888888776654 223344466655
Q ss_pred HHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCcc------------CcchhHHHHHHHhhcc
Q 002697 736 AVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELV------------SPHMEHFMQPWCIALS 803 (891)
Q Consensus 736 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~------------~~~~~~~l~~~~~~l~ 803 (891)
+.+.+..+.|.+++|+.+++..+.... ..++.++.+..++.|....++.+ .|.+..++..|++...
T Consensus 737 it~a~~el~~n~d~IL~Avisrmq~ae--~lsviQsLi~VfahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~srqh 814 (1005)
T KOG2274|consen 737 ITHASSELGPNLDQILRAVISRLQQAE--TLSVIQSLIMVFAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQH 814 (1005)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhhh
Confidence 466778899999999999998887765 46888999999999986543322 2456779999999886
Q ss_pred CCCCchHHHHHHHHHHHHHhh
Q 002697 804 MIRDDTEKEDAFRGLCAMVKA 824 (891)
Q Consensus 804 ~~~~~~e~~~~~~~l~~l~~~ 824 (891)
....+-|++...+.+|+++++
T Consensus 815 l~~g~ye~kv~i~alc~al~~ 835 (1005)
T KOG2274|consen 815 LYFGEYEGKVSIKALCKALQH 835 (1005)
T ss_pred hhhhhhhchhhHHHHHHHHHh
Confidence 655555655566666666665
No 9
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-33 Score=290.63 Aligned_cols=809 Identities=16% Similarity=0.208 Sum_probs=509.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhcc-----CChhhH
Q 002697 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQ 91 (891)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~-----~~~~~~ 91 (891)
+.++|+++.|+|.. ++|.||++|.+.+++|+|...+..|+.+. +.+..+|-+|.+.+||.|.+.|+. ++++.|
T Consensus 2 vvq~Lq~Ats~d~~-v~k~AE~qLr~WEtqPGF~~~L~sI~l~~-t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK 79 (978)
T KOG1993|consen 2 VVQVLQQATSQDHI-VVKPAEAQLRQWETQPGFFSKLYSIFLSK-TNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEK 79 (978)
T ss_pred HHHHHHHhcCCCcc-cchhHHHHHHhhccCCcHHHHHHHHHhcc-ccceeeeeehhhhHhcchhHHhhcCCcccCCHHHH
Confidence 57889999999999 99999999999999999999999998854 788999999999999999999985 799999
Q ss_pred HHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccC----ChhHHhHHHHHHHHHHhhchhc-c
Q 002697 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN----DINHMEGAMDALSKICEDIPQV-L 166 (891)
Q Consensus 92 ~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~----~~~~r~~al~~L~~l~~~~~~~-~ 166 (891)
+.||..++..+.+++..+..+.|.+++.||+.+.|..||+|++.|.+.+++. |....+..+..|..+.+..... +
T Consensus 80 ~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL 159 (978)
T KOG1993|consen 80 DFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL 159 (978)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999998876 7778888999998888876542 1
Q ss_pred ccCCCCCCCcchhhhHHHHHHhhcCC------------CH-------HHHHHHHHHHHHHhcc---cc--hhhHHhHHHH
Q 002697 167 DSDVPGLAECPINIFLPRLLQFFQSP------------HT-------SLRKLSLGSVNQFIML---MP--SALFVSMDQY 222 (891)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~l~~~l~~~------------~~-------~vr~~al~~l~~~~~~---~~--~~~~~~~~~~ 222 (891)
..+ +..|....+.+++.+...+-++ .. ++-..+++++..++.+ .| .++.+.+..+
T Consensus 160 ~a~-rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl~~F 238 (978)
T KOG1993|consen 160 LAD-RKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERLLQF 238 (978)
T ss_pred hhh-hHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHH
Confidence 111 1112222233333222222111 11 1223345555555432 12 1233444444
Q ss_pred HHH----HHHhhCCCC----HHHHHHH----HHHHHHHHhhChhhhhH--hHHHHHHHHHhhcCC-------------CC
Q 002697 223 LQG----LFLLSNDPS----AEVRKLV----CAAFNLLIEVRPSFLEP--HLRNLFEYMLQVNKD-------------TD 275 (891)
Q Consensus 223 l~~----l~~~~~~~~----~~v~~~~----~~~l~~l~~~~~~~~~~--~l~~l~~~~~~~~~~-------------~~ 275 (891)
++. +...++... .++-... .+++..+.+..|-.|.. ..+..+++.+...-+ .-
T Consensus 239 ~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~f 318 (978)
T KOG1993|consen 239 LELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHLSSF 318 (978)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccccccccH
Confidence 432 112222111 1222233 34445556655555543 233333333332211 12
Q ss_pred HHHHHHHHHHHHHhhcc--CC--------------chh---------hHHhhhhhhHHHHH-hhccCChhhhhhhhhccc
Q 002697 276 DDVALEACEFWHSYFEA--QL--------------PHE---------NLKEFLPRLVPVLL-SNMIYADDDESLVEAEED 329 (891)
Q Consensus 276 ~~v~~~a~~~l~~l~~~--~~--------------~~~---------~~~~~l~~li~~ll-~~l~~~~~d~~~~~~~~~ 329 (891)
++...+++..+..+... .. ..+ ...+-+..++..++ .++..+++|.|.|..||+
T Consensus 319 e~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE 398 (978)
T KOG1993|consen 319 EEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQDPE 398 (978)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcChH
Confidence 34445555555433221 00 000 01123445666666 567888999999987765
Q ss_pred -CCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCC-----C
Q 002697 330 -ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASG-----D 403 (891)
Q Consensus 330 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~-----~ 403 (891)
|.. |++..+-.+++|.||...+..+...+++-.+|.++..+....+... +
T Consensus 399 ~~~~------------------------Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~ 454 (978)
T KOG1993|consen 399 GWVL------------------------EQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTED 454 (978)
T ss_pred Hhhh------------------------hcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccch
Confidence 211 1111112347899999999999999999888888888865544321 1
Q ss_pred c-chHHHHHHHHHHHHHhhcchhh--hhhhHHHHHHHHhhhcC---CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH
Q 002697 404 E-AWKDREAAVLALGAIAEGCIKG--LYPHLSEIVAFLIPLLD---DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF 477 (891)
Q Consensus 404 ~-~~~~r~aa~~~l~~l~~~~~~~--~~~~l~~i~~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 477 (891)
- ..-.+.|.+.++|.-+....+. +...+ ...+++.+. +....+|++.+|.+|+..+.- ...+.-
T Consensus 455 l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl---~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq-------~~~e~k 524 (978)
T KOG1993|consen 455 LTALLLKDAIYAAFGLAAYELSNILDFDKWL---QEALLPELANDHGNSRIIRRRVAWILGQWVSVQ-------QKLELK 524 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH---HHhhCHHhhhcccchhHHHHHHHHHHhhhhhee-------chHhHH
Confidence 0 1334566666677655544332 22333 233333333 233478899999999877632 133444
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh---cccchHhHHHHHHHHHHHHcccch-hHHHHHHHHHHHHHHHhc
Q 002697 478 EKVLMGLLKRILDT-NKRVQEAACSAFATLEEEA---AEELAPRLEIILQHLMMAFGKYQR-RNLRIVYDAIGTLADAVG 552 (891)
Q Consensus 478 ~~~l~~l~~~l~d~-~~~v~~~a~~al~~l~~~~---~~~~~~~l~~il~~l~~~l~~~~~-~~~~~~~~al~~l~~~~~ 552 (891)
..++.+++..+.|. +..||.+++.++...++.. .+.+.||++.+...+.+++..... +.+..++..++.++..++
T Consensus 525 ~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~ 604 (978)
T KOG1993|consen 525 PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVS 604 (978)
T ss_pred HHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 56677777888877 6889999999999999875 688999999999999999987654 566688999999999999
Q ss_pred ccCCchhhhhhhhHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCC
Q 002697 553 FELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQ 631 (891)
Q Consensus 553 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e 631 (891)
+.+. ||...++..+-..|+... +++-+ .+++.++..++.++|..-.++.+-+++.+ +-.. |+.. .+
T Consensus 605 e~I~--P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVI----el~~----D~~s--P~ 671 (978)
T KOG1993|consen 605 EHIA--PYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVI----ELST----DPSS--PE 671 (978)
T ss_pred Hhhh--HHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHH----HHhc----CCCC--Cc
Confidence 9987 899999998888898765 33444 78999999999999985444444444433 2111 1110 00
Q ss_pred CchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhch-HhhHHhHHHHHHHHH
Q 002697 632 YDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAA 710 (891)
Q Consensus 632 ~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~ 710 (891)
.--+.+-++++++........--..++ .++|.+...+.. +.+....++..+...+--.+ .-...|...++..+.
T Consensus 672 -hv~L~EDgmeLW~~~L~n~~~l~p~ll---~L~p~l~~~iE~-ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~ 746 (978)
T KOG1993|consen 672 -HVYLLEDGMELWLTTLMNSQKLTPELL---LLFPHLLYIIEQ-STENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLN 746 (978)
T ss_pred -eeehhhhHHHHHHHHHhcccccCHHHH---HHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 112334466777776654422111121 133333333322 22333444444443333222 223345555555555
Q ss_pred HhcCCCCCcCchhHhhhHHHHHHHHH---Hhchhhhhh-HHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCc
Q 002697 711 KQLNTPKLKETVSVANNACWAIGELA---VKARQEISP-IVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPEL 786 (891)
Q Consensus 711 ~~l~~~~~~~~~~v~~~a~~alg~l~---~~~~~~~~~-~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 786 (891)
+.+. ++|+....++-.++ ....+-+.+ +...+++.++.-+..... .+-+...-...+||+...+|+.
T Consensus 747 ~~l~--------dvr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~-yP~~~~~yl~vvaRi~l~n~~~ 817 (978)
T KOG1993|consen 747 DLLD--------DVRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDK-YPYVMGEYLLVVARISLRNPSL 817 (978)
T ss_pred HHHH--------HhhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCC-CchhHHHHHHHHHHHHhcChHH
Confidence 5544 34433333333332 122211111 233344444443322211 2344455677789999888876
Q ss_pred cCc----------chhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChhhhHhhHHHHhhHhhc----cc--------
Q 002697 787 VSP----------HMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIAS----WH-------- 844 (891)
Q Consensus 787 ~~~----------~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~----~~-------- 844 (891)
+.. .+..++..|+...+...+.+.|+....++.+++..+.+.++..++.|++...+ ..
T Consensus 818 ~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~~~~I~nl~~e~L~eV~ed~~g~~~ 897 (978)
T KOG1993|consen 818 FMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILAVLDSIMNLWFEVLSEVMEDANGDAT 897 (978)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHHHHhHHHHHHHHHHHHHhhhccCchH
Confidence 532 13468899999999988888888888999999999776666555555443321 00
Q ss_pred ---------c-----c-Cc-----------------hhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHHhhhc
Q 002697 845 ---------E-----I-RS-----------------EELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 889 (891)
Q Consensus 845 ---------~-----~-~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 889 (891)
+ + +. -.+++++...+..+...+|++.+++++.+..|++...|+.|
T Consensus 898 ~~~~~d~~~e~~~~~d~tteq~~r~k~l~lkDPVh~vsl~~fi~~~l~~~q~~lG~q~yqq~l~tVnp~lleqlq~f 974 (978)
T KOG1993|consen 898 DYHLNDDLSEQGVYEDETTEQDTRHKQLLLKDPVHSVSLRSFIISVLMFLQDALGEQRYQQYLSTVNPELLEQLQMF 974 (978)
T ss_pred HHHhhhhhhccccCCchhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHH
Confidence 0 0 00 02668888989999999998789999999999999988753
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-33 Score=283.76 Aligned_cols=682 Identities=17% Similarity=0.198 Sum_probs=503.0
Q ss_pred CCCHHHHHHHHHHHHH-Hhc----CC-ChHHHHH-HHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHh
Q 002697 27 PSSTADKSQIWQQLQQ-YSQ----FP-DFNNYLA-FILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELL 99 (891)
Q Consensus 27 ~d~~~~r~~a~~~L~~-~~~----~p-~~~~~l~-~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll 99 (891)
-|.. +|..|---|++ ... .| +...|.- +.+.+-.+.++-+|...++.+-..+.+.... ....+...|.
T Consensus 60 ~d~~-~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~----~wpelLp~L~ 134 (885)
T KOG2023|consen 60 EDVP-TRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQ----HWPELLPQLC 134 (885)
T ss_pred cchh-HHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccc----cchhHHHHHH
Confidence 3444 78888888865 321 22 2222221 2232223567789999998775555431111 1134556677
Q ss_pred hhhhcCChHHHHHHHHHHHHHHhhc-------c-cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCC
Q 002697 100 PCLGAADRHIRSTVGTIVSVVVQLG-------G-IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (891)
Q Consensus 100 ~~L~~~~~~vr~~~a~~l~~i~~~~-------~-~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (891)
+.|.+++......+..++.+|+... . .....-++|.+++..++++|..|..|+.++..+.-.-...+.
T Consensus 135 ~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~---- 210 (885)
T KOG2023|consen 135 ELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALY---- 210 (885)
T ss_pred HHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHH----
Confidence 7888888777777777888887542 1 123345899999999999999999999999776554333221
Q ss_pred CCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002697 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (891)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~ 251 (891)
..+..++..++...+|++++||+..+.++..+++..++.+.++++.+++..+...+|.+++|.-.||+.+..+++.
T Consensus 211 ----~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 211 ----VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred ----HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 2467888999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred --ChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc---CCchhhHH--------------------------
Q 002697 252 --RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA---QLPHENLK-------------------------- 300 (891)
Q Consensus 252 --~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~-------------------------- 300 (891)
..+.+.||++++++.+++.|..++.+..... .--+. +...+.++
T Consensus 287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~-----~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLK-----NNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHccCccccccHHHhc-----CccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 4567899999999999987664443321110 00000 00011111
Q ss_pred ---------------------------hhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCC
Q 002697 301 ---------------------------EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSEN 353 (891)
Q Consensus 301 ---------------------------~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 353 (891)
..++.++|.+-..+
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L--------------------------------------- 402 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHL--------------------------------------- 402 (885)
T ss_pred cccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHc---------------------------------------
Confidence 11222222221111
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHcCc---chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhh-hhh
Q 002697 354 PEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYP 429 (891)
Q Consensus 354 ~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~-~~~ 429 (891)
..+.|.+|.++..+++.+++..-+ ..+|.++|++...+.+.. +-+|.-+++.|+..+...... -..
T Consensus 403 -------~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKk---plVRsITCWTLsRys~wv~~~~~~~ 472 (885)
T KOG2023|consen 403 -------SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKK---PLVRSITCWTLSRYSKWVVQDSRDE 472 (885)
T ss_pred -------CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCc---cceeeeeeeeHhhhhhhHhcCChHh
Confidence 123599999999999999998733 557788999999999887 999999999999888755432 236
Q ss_pred hHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Q 002697 430 HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEE 508 (891)
Q Consensus 430 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~-~~~v~~~a~~al~~l~~ 508 (891)
++..++.-++..+-|.+..|+.+||.++..+-+...+ ...+|++.++..+...++.- .+.+. --..|++++++
T Consensus 473 ~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~-----eLVp~l~~IL~~l~~af~kYQ~KNLl-ILYDAIgtlAd 546 (885)
T KOG2023|consen 473 YFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE-----ELVPYLEYILDQLVFAFGKYQKKNLL-ILYDAIGTLAD 546 (885)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHhhccee-hHHHHHHHHHH
Confidence 7888888889999999999999999999988876653 36779999999998887631 12221 23567888888
Q ss_pred Hhcccc--hHhHHHHHHHHHHHHcccc--hhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcC-------C-
Q 002697 509 EAAEEL--APRLEIILQHLMMAFGKYQ--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL-------P- 576 (891)
Q Consensus 509 ~~~~~~--~~~l~~il~~l~~~l~~~~--~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~- 576 (891)
.++..+ ..|+..+||.|+...+.-+ ++.+--+++|+++++.++|..|. ||...+....+..+++. .
T Consensus 547 svg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~--P~~~~Vy~Rc~~il~~t~q~~~~~~~ 624 (885)
T KOG2023|consen 547 SVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFL--PYAQPVYQRCFRILQKTLQLLAKVQQ 624 (885)
T ss_pred HHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhcccc--ccCHHHHHHHHHHHHHHHHHHHhccC
Confidence 887776 3488889998888776443 34555789999999999999998 88888877766666521 0
Q ss_pred -----CCCcch-HhHHHHHHHHHHHhccccccchH--HHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHH
Q 002697 577 -----NSDKDL-FPLLECFTSIAQALGAGFTQFAQ--PVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLA 648 (891)
Q Consensus 577 -----~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~ 648 (891)
..+++. .-.++.++-++..+|.++.|.+. .+...+++++.. .-+++|..++-++|.+.
T Consensus 625 ~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D--------------~~peVRQS~FALLGDlt 690 (885)
T KOG2023|consen 625 DPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQD--------------EVPEVRQSAFALLGDLT 690 (885)
T ss_pred CccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhcc--------------CChHHHHHHHHHHHHHH
Confidence 012222 45788899999999988776543 245555554441 26789999999999999
Q ss_pred HHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhH
Q 002697 649 EGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNA 728 (891)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a 728 (891)
.++.+...|++.. +++++...+..+.-.+...|+.++|+++..++....+|+..++..++..++..+. ...+-+|.
T Consensus 691 k~c~~~v~p~~~~--fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~--~~tllENt 766 (885)
T KOG2023|consen 691 KACFEHVIPNLAD--FLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNT--PKTLLENT 766 (885)
T ss_pred HHHHHhccchHHH--HHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCc--hHHHHHhh
Confidence 9998888888875 8999887676667788999999999999999999999999999999988887654 34778999
Q ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccCCCC
Q 002697 729 CWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRD 807 (891)
Q Consensus 729 ~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 807 (891)
+.++|+++...++.+.|+++..++.....+++-. ...-+++|...++.++..+|..+. .-+..||.+.....+
T Consensus 767 AITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~--DneEK~sAFrG~c~mi~vNp~~vv----~~~~f~c~aiAsw~n 839 (885)
T KOG2023|consen 767 AITIGRLGYICPEEVAPHLDSFMRPWCTSLRNID--DNEEKESAFRGLCNMINVNPSGVV----SSFIFICDAIASWSN 839 (885)
T ss_pred hhhhhhhhccCHHhcchhHHHHHHHHHHHhcccc--cchhHHHHHHHHHHheeeCchhhh----hhhHHHHHHHhcccC
Confidence 9999999999999999999999999888887654 357788999999999999998764 334556666655443
No 11
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-30 Score=262.16 Aligned_cols=752 Identities=14% Similarity=0.172 Sum_probs=479.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccC-----C--
Q 002697 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM-----S-- 87 (891)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~-----~-- 87 (891)
+++.|++.++++.|.+ +|+.||..|+++.+.|+|...+++++.++ ..++.+|+.|++.+||.|.+.|+.+ +
T Consensus 3 ~ellqcf~qTldada~-~rt~AE~~Lk~leKqPgFv~all~i~s~d-e~~lnvklsAaIYfKNkI~rsWss~~d~~i~~D 80 (970)
T COG5656 3 EELLQCFLQTLDADAG-KRTIAEAMLKDLEKQPGFVMALLHICSKD-EGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKAD 80 (970)
T ss_pred HHHHHHHHHHhccCcc-hhhHHHHHHHHhhcCCcHHHHHHHHHhhc-cCCchhhHHHHHHHhhhhhhhhhhcccCCCCCc
Confidence 4789999999999999 99999999999999999999999999865 6899999999999999999999972 2
Q ss_pred --hhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhccc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 002697 88 --PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (891)
Q Consensus 88 --~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (891)
++.|+.+++.++..+...+...|...-.++..|...+++ +.|+ +.|....++.+++..+...++.++..+++...-
T Consensus 81 ek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayRw 159 (970)
T COG5656 81 EKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYRW 159 (970)
T ss_pred ccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHhh
Confidence 345555555565555566777888777788888888755 8999 999999999999999999999999999987654
Q ss_pred ccccCCCCCCCcchhhhHHHHHHhhc---C-C---CHHHHHHHHHHHHHHhcc-cchhhHH--hHHHHHHHHHHhhCC--
Q 002697 165 VLDSDVPGLAECPINIFLPRLLQFFQ---S-P---HTSLRKLSLGSVNQFIML-MPSALFV--SMDQYLQGLFLLSND-- 232 (891)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~~l~---~-~---~~~vr~~al~~l~~~~~~-~~~~~~~--~~~~~l~~l~~~~~~-- 232 (891)
.+..+. .........++|.+.+.-. + . +.+.....++.+..++.+ +|+.+.. .+-.+++..+..++-
T Consensus 160 k~ndeq-~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkpl 238 (970)
T COG5656 160 KYNDEQ-VDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPL 238 (970)
T ss_pred hccchH-hhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCC
Confidence 332210 0011223445555554432 2 2 345556666666665533 3433221 122222222222221
Q ss_pred ------CCHH---------HHHHHHHHHHHHHhhChhhh--------hHhHHHHHHHHHhh----c----CCC--CHHHH
Q 002697 233 ------PSAE---------VRKLVCAAFNLLIEVRPSFL--------EPHLRNLFEYMLQV----N----KDT--DDDVA 279 (891)
Q Consensus 233 ------~~~~---------v~~~~~~~l~~l~~~~~~~~--------~~~l~~l~~~~~~~----~----~~~--~~~v~ 279 (891)
-+++ +++.+...|..+...+.+.. ......+++.+++. . ++. -.+..
T Consensus 239 p~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd~~ 318 (970)
T COG5656 239 PNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSDIE 318 (970)
T ss_pred CHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecchHH
Confidence 1222 34566666766655443221 11111233333221 1 111 11233
Q ss_pred HHHHHHHHH-hhccCCchhhHHhhhhhhHHHH-HhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCC
Q 002697 280 LEACEFWHS-YFEAQLPHENLKEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (891)
Q Consensus 280 ~~a~~~l~~-l~~~~~~~~~~~~~l~~li~~l-l~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 357 (891)
...+.++.. ++.....+..++|+++-++... ++.++.+++++|.||+||+ +|+|.++.. .+
T Consensus 319 LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~-------eyirry~df--------~d-- 381 (970)
T COG5656 319 LYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPD-------EYIRRYYDF--------FD-- 381 (970)
T ss_pred HHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHH-------HHHHHhcch--------hc--
Confidence 455554444 4444557899999999998765 4899999999999998876 355544321 11
Q ss_pred CccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhcc-----CCCcchHHHHHHHHHHHHHhhcc--hhhhhhh
Q 002697 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGC--IKGLYPH 430 (891)
Q Consensus 358 d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~r~aa~~~l~~l~~~~--~~~~~~~ 430 (891)
...+.--+|..++-.+....++..+..+++++...++. .+.++.+..++|+..++.+..-. ...+...
T Consensus 382 -----~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~ 456 (970)
T COG5656 382 -----NGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANV 456 (970)
T ss_pred -----CCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHH
Confidence 11234456667777777777888888899988887742 22255899999999999988721 2223334
Q ss_pred HHH-HHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 002697 431 LSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (891)
Q Consensus 431 l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (891)
+.. +++++++.++++...+|.+||..++++.+.++ ....+.+++.....++++++-.|+..|+.|+..|+.+
T Consensus 457 me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfk-------d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~ 529 (970)
T COG5656 457 MEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFK-------DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN 529 (970)
T ss_pred HHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc
Confidence 443 78899999999999999999999999977665 4566778888899999998889999999999999876
Q ss_pred h--cccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHH----HH----cCCC--
Q 002697 510 A--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK----WQ----QLPN-- 577 (891)
Q Consensus 510 ~--~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~----l~----~~~~-- 577 (891)
. .+.+..|++.+|++|+.+-+..+-+.+. .++..+++...++.. ||..+++..+.+. .+ +.++
T Consensus 530 ~q~h~k~sahVp~tmekLLsLSn~feiD~LS---~vMe~fVe~fseELs--pfa~eLa~~Lv~qFlkiaq~l~ens~d~~ 604 (970)
T COG5656 530 EQSHEKFSAHVPETMEKLLSLSNTFEIDPLS---MVMESFVEYFSEELS--PFAPELAGSLVRQFLKIAQSLLENSSDTS 604 (970)
T ss_pred hhhhHHHHhhhhHHHHHHHHhcccccchHHH---HHHHHHHHHhHHhhc--hhHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 5 5667889999999999887777666555 444555666666665 7777777766662 22 2211
Q ss_pred ---CCcch--HhHHHHHHHHHHHhcc--ccccchHHHHHHHHH-HHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHH
Q 002697 578 ---SDKDL--FPLLECFTSIAQALGA--GFTQFAQPVFQRCIN-IIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAE 649 (891)
Q Consensus 578 ---~~~~~--~~~~~~l~~i~~~~~~--~~~~~~~~i~~~l~~-~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~ 649 (891)
+|+++ ..++.++.++...+.. ....|+....-.+++ ++.+. -.++-..+++.+.+..-
T Consensus 605 s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~--------------i~dfy~Ea~dildg~tf 670 (970)
T COG5656 605 SVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE--------------ISDFYQEALDILDGYTF 670 (970)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHhhhhH
Confidence 12233 3466666666666554 333444333222222 23321 12344445565555433
Q ss_pred HHhhhHHhhhccchHHHHHHHHhcCCCh-HHHHHHHHHHhHHHHhchHhhH---HhHHHHHHHHHHhcCCCCCcCchhHh
Q 002697 650 GLGSGIESLVAQSNLRDMLLQCCMDDAS-DVRQSAFALLGDLARVCPVHLQ---ARLSDFLDIAAKQLNTPKLKETVSVA 725 (891)
Q Consensus 650 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~~~v~ 725 (891)
..+ .+.|.... ++.++.+++.++.. .--+.+..++.+++.+.+..+. -|...++.+...++.++.. ...-+
T Consensus 671 ~sk-eI~pimwg--i~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n--~l~D~ 745 (970)
T COG5656 671 MSK-EIEPIMWG--IFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEEN--FLEDF 745 (970)
T ss_pred HHH-HhhhhhhH--HHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhh--hHHHH
Confidence 322 34455544 88888888877663 4455666778888887765443 3555666666667766531 22445
Q ss_pred hhHHHHHHHHHHhchhh-hhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHH-HhhhhhhcCCc------cCcchhHHHHH
Q 002697 726 NNACWAIGELAVKARQE-ISPIVMTVVLCLVPILKHSEELNKSLIENSAIT-LGRLAWVCPEL------VSPHMEHFMQP 797 (891)
Q Consensus 726 ~~a~~alg~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~-l~~l~~~~~~~------~~~~~~~~l~~ 797 (891)
..++..+..++.+.++. ..+|++.........+...+.. ...+-.+... +..++. .|.. ...++..++..
T Consensus 746 ~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dEl-g~~sv~aleliinnli~-~P~eTLqiLe~qg~l~~FF~~ 823 (970)
T COG5656 746 IGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDEL-GPASVYALELIINNLIL-RPKETLQILEEQGYLQSFFEK 823 (970)
T ss_pred HHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhccccc-cchhhhHHHHHHHHHhc-ChHHHHHHHHHcCcHHHHHHH
Confidence 67778888888887753 4556664443333222221110 1111111111 111111 1111 12367789999
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHHhhC
Q 002697 798 WCIALSMIRDDTEKEDAFRGLCAMVKAN 825 (891)
Q Consensus 798 ~~~~l~~~~~~~e~~~~~~~l~~l~~~~ 825 (891)
|++..+....-..++..+.++.+++...
T Consensus 824 wf~~ipkfkrvhdkKLsvlaIltii~l~ 851 (970)
T COG5656 824 WFSQIPKFKRVHDKKLSVLAILTIIRLQ 851 (970)
T ss_pred HHhcCcchhhhhhhHhHHHHHHHHHHhc
Confidence 9999888776777777777777777663
No 12
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-29 Score=257.78 Aligned_cols=741 Identities=16% Similarity=0.176 Sum_probs=503.1
Q ss_pred CCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhc--CChHHHHHHHHHHHHHHh-hc------ccCchHHH
Q 002697 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQ-LG------GIAGWLEL 132 (891)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~--~~~~vr~~~a~~l~~i~~-~~------~~~~w~~l 132 (891)
+.|+.+|..|-..|++.-..++ ......|-+.|.+ .+...|..++-.+-+-.. ++ ....|-.+
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf--------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l 83 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNF--------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQL 83 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccH--------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcC
Confidence 5678899999888876654433 2333344455543 355667766666655322 22 23456432
Q ss_pred --------HHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCH-HHHHHHHHH
Q 002697 133 --------LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGS 203 (891)
Q Consensus 133 --------l~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~vr~~al~~ 203 (891)
-..++..+.++.|.....|..+++.++..--+ ...++.+++.+..-..++.+ .++.+++++
T Consensus 84 ~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP----------~n~wp~li~~lv~nv~~~~~~~~k~~slea 153 (859)
T KOG1241|consen 84 PAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP----------QNQWPELIVTLVSNVGEEQASMVKESSLEA 153 (859)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc----------hhhCHHHHHHHHHhcccccchHHHHHHHHH
Confidence 34455666777888888899999888763111 13346677776666655543 699999999
Q ss_pred HHHHhcccc-hhhHHhHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHhhChhhhhHhHH--HHHHHHHhhcCCCCHHH
Q 002697 204 VNQFIMLMP-SALFVSMDQYLQGLFLLSN--DPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTDDDV 278 (891)
Q Consensus 204 l~~~~~~~~-~~~~~~~~~~l~~l~~~~~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~~v 278 (891)
++.+.+... +.+..+.+.++..+..... .++..+|-.+..+|..-.+.....|....+ -+++......+.+|.++
T Consensus 154 lGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i 233 (859)
T KOG1241|consen 154 LGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEI 233 (859)
T ss_pred HHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHH
Confidence 999998764 4455566677777776543 567889999999986655443333332211 24444455667889999
Q ss_pred HHHHHHHHHHhhccCCchhhHHhhhhh-hHHHHHhhccCChhhh-----hhhhhcccCCCCCCCCCCCcccccccCCCCC
Q 002697 279 ALEACEFWHSYFEAQLPHENLKEFLPR-LVPVLLSNMIYADDDE-----SLVEAEEDESLPDRDQDLKPRFHSSRLHGSE 352 (891)
Q Consensus 279 ~~~a~~~l~~l~~~~~~~~~~~~~l~~-li~~ll~~l~~~~~d~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 352 (891)
+..|+.++..++.. ..+.+.+|+.+ ++++-+..|....++. |.|..--+|.. ++. -
T Consensus 234 ~~aa~~ClvkIm~L--yY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEi-----D~~-----------~ 295 (859)
T KOG1241|consen 234 QVAAFQCLVKIMSL--YYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEI-----DLA-----------I 295 (859)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH-----HHH-----------H
Confidence 99999999998887 77888999888 7777788888555443 44431100000 000 0
Q ss_pred CCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhcc----CCCcchHHHHHHHHHHHHHhhcchhhhh
Q 002697 353 NPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA----SGDEAWKDREAAVLALGAIAEGCIKGLY 428 (891)
Q Consensus 353 ~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~r~aa~~~l~~l~~~~~~~~~ 428 (891)
+.. + ..+....- + +..+-...++.++|.+.+.+.. .+++.|..-.+|-.||.-++..+.+.+.
T Consensus 296 e~~-e---~~d~~~~p--~-------~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv 362 (859)
T KOG1241|consen 296 EYG-E---AVDQGLPP--S-------SKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV 362 (859)
T ss_pred HHH-H---HhhcCCCc--h-------hhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch
Confidence 000 0 00000000 0 0011111233455555554432 3344599999999999999999988765
Q ss_pred hhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002697 429 PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (891)
Q Consensus 429 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (891)
+ .++|++-..+++|+.+-|.+|..++|.+.+.-.+ ....+...+.++.++..+.|++..|+..+.++|+++++
T Consensus 363 ~---~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~----~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 363 P---HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP----DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred h---hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch----hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence 4 5799999999999999999999999988775432 23667788899999999999999999999999999999
Q ss_pred HhcccchH--hHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhccc--------CCchhhhhhhhHHHHHHHHcCCCC
Q 002697 509 EAAEELAP--RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE--------LNQPVYLDILMPPLIAKWQQLPNS 578 (891)
Q Consensus 509 ~~~~~~~~--~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~--------~~~~~~~~~l~~~l~~~l~~~~~~ 578 (891)
.+.+...+ |+..+++.+..-+.+. +++-..++.++..+++...+. ... ++++.++..|+..-.....+
T Consensus 436 ~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgn 513 (859)
T KOG1241|consen 436 FLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGN 513 (859)
T ss_pred hchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccc
Confidence 98765543 6778888887777643 344446677777777643221 222 57777777776655443334
Q ss_pred Ccch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCch----hHHHHHhhhHHHHHHHHhh
Q 002697 579 DKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDK----EFVVCCLDLLSGLAEGLGS 653 (891)
Q Consensus 579 ~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~----~~~~~~~~~l~~l~~~~~~ 653 (891)
+..+ .++.++++.+.+.......|-...+...++.-|++..+.+.-+ .+ |+ ++......++..+...+|.
T Consensus 514 qsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~----~~-dr~q~~eLQs~Lc~~Lq~i~rk~~~ 588 (859)
T KOG1241|consen 514 QSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILS----LA-DRAQLNELQSLLCNTLQSIIRKVGS 588 (859)
T ss_pred hhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc----Hh-hHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4444 7889999999998887776666655555554444433211100 00 22 2333345567778888888
Q ss_pred hHHhhhccchHHHHHHHHhcC-CChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHH
Q 002697 654 GIESLVAQSNLRDMLLQCCMD-DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAI 732 (891)
Q Consensus 654 ~~~~~~~~~~l~~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~al 732 (891)
++.+..++ ++.++++.++. ++..+.+.|+..++.++...|..|..|++.+.|.+...|++.. ...|...|+..+
T Consensus 589 ~~~~~~d~--iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~---e~qVc~~aVglV 663 (859)
T KOG1241|consen 589 DIREVSDQ--IMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ---EYQVCAAAVGLV 663 (859)
T ss_pred cchhHHHH--HHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch---HHHHHHHHHHHH
Confidence 88888887 99999998877 5667888999999999999999999999999999999997653 457889999999
Q ss_pred HHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccC---CCCc-
Q 002697 733 GELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSM---IRDD- 808 (891)
Q Consensus 733 g~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~---~~~~- 808 (891)
|+++..++.+|.||.+.++..|+..|.++. .+++++-...+++|.|...-...+.+|+..+++.+-.+-.. ..|.
T Consensus 664 gdl~raL~~~i~py~d~~mt~Lvq~Lss~~-~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~ 742 (859)
T KOG1241|consen 664 GDLARALEDDILPYCDELMTVLVQCLSSPN-LHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDS 742 (859)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHccCcc-ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCccc
Confidence 999999999999999999999999999885 58899999999999999987777788999888887765422 2121
Q ss_pred ------hHHHH---HHHHHHHHHhh--ChhhhHhhHHHHhhHhhc-ccccC-chhHHHHHHHHHHHHHhhcChhhH
Q 002697 809 ------TEKED---AFRGLCAMVKA--NPSGALSSLVFMCRAIAS-WHEIR-SEELHNEVCQVLHGYKQMLRNGAW 871 (891)
Q Consensus 809 ------~e~~~---~~~~l~~l~~~--~~~~~~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 871 (891)
+-|.. +|.|+..-++. .+..+.|+++.|+..+-+ ..+++ ++.+......++..+..+||++..
T Consensus 743 ~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~ 818 (859)
T KOG1241|consen 743 MVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVI 818 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchh
Confidence 12333 44444444443 233445888888887766 22332 344666777888888888885333
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=7.5e-29 Score=261.75 Aligned_cols=729 Identities=16% Similarity=0.190 Sum_probs=472.2
Q ss_pred HhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHH
Q 002697 56 ILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQA 135 (891)
Q Consensus 56 il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~ 135 (891)
++...++.|...|.+|..-|.+.+.+.--.+..+.-..+...+++.|.|.+.+|.+-+..+++.++++-+..+...+.+.
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~ 89 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVEN 89 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 34334467889999999999999988877788888788888999999999999999999999999988777788888888
Q ss_pred HHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhh--------------------------
Q 002697 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF-------------------------- 189 (891)
Q Consensus 136 L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l-------------------------- 189 (891)
|...+-++....|..+-..|.......++...+... ....+.+.|.+.+.+
T Consensus 90 L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la---~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ 166 (1233)
T KOG1824|consen 90 LCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLA---ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT 166 (1233)
T ss_pred HhhhhccchhhhccHHHHHHHHHHhcCCCccccccc---cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc
Confidence 888766666666666655555555444432111000 011222223222222
Q ss_pred -----------------cCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhh
Q 002697 190 -----------------QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEV 251 (891)
Q Consensus 190 -----------------~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~v~~~~~~~l~~l~~~ 251 (891)
+++...||+.|+.+++.+....+...... ++..+...+.. .+....+..+++|..++..
T Consensus 167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~---li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ 243 (1233)
T KOG1824|consen 167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVE---LIEHLLKGLSNRTQMSATRTYIQCLAAICRQ 243 (1233)
T ss_pred cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHH---HHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 22344567777777777766665544333 25555554432 3344445577888888888
Q ss_pred ChhhhhHhHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcc
Q 002697 252 RPSFLEPHLRNLFEYMLQVN---KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEE 328 (891)
Q Consensus 252 ~~~~~~~~l~~l~~~~~~~~---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~ 328 (891)
.+..+..|++.+++.+.+.. +..+++.|..+++.+..+... .+..+.|+.+.++..++.+++|.+......++|+
T Consensus 244 ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r--cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDe 321 (1233)
T KOG1824|consen 244 AGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR--CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDE 321 (1233)
T ss_pred hcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh--ChhhhcccchHHHHHHHHHhccCCCCCCCCccch
Confidence 88888889998888887765 667888999999988888877 7788899999999999999998753221111111
Q ss_pred cCCCCCCCCCCCcccccccCCCCCCC--CCCCccccccccHHHHHHHHHHHHHHHcCc---chhhh--------------
Q 002697 329 DESLPDRDQDLKPRFHSSRLHGSENP--EDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPT-------------- 389 (891)
Q Consensus 329 ~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~-------------- 389 (891)
++...++. +|++ +++.||++..|.+|++|+.++..+.....+ .+...
T Consensus 322 d~~~~ed~--------------eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREE 387 (1233)
T KOG1824|consen 322 DAMFLEDE--------------EDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREE 387 (1233)
T ss_pred hhhhhhcc--------------ccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhh
Confidence 11000000 0111 234455677899999999999876654321 11111
Q ss_pred -----hHHHHHHhhccC----------C------------------------------CcchHHHHHHHHHHHHHhhcch
Q 002697 390 -----LMPVIQAKLSAS----------G------------------------------DEAWKDREAAVLALGAIAEGCI 424 (891)
Q Consensus 390 -----l~~~l~~~l~~~----------~------------------------------~~~~~~r~aa~~~l~~l~~~~~ 424 (891)
++......+.+. + +..-+.|.+++..|..+....+
T Consensus 388 nVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp 467 (1233)
T KOG1824|consen 388 NVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLP 467 (1233)
T ss_pred hHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCc
Confidence 122222222110 0 0002334455555556665566
Q ss_pred hhhhhhHHHHHHHHhhhcCCCCh--HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 002697 425 KGLYPHLSEIVAFLIPLLDDKFP--LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSA 502 (891)
Q Consensus 425 ~~~~~~l~~i~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~a 502 (891)
+.+.++++.++|.+...++|.+. ..+..+...+....... .|+...++...+.+.+.....|+-..+-..|...
T Consensus 468 ~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~----~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v 543 (1233)
T KOG1824|consen 468 GALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISH----PPEVFHPHLSALSPPVVAAVGDPFYKISAEALLV 543 (1233)
T ss_pred chhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcC----ChhhcccchhhhhhHHHHHhcCchHhhhHHHHHH
Confidence 66778889999999999998654 44444444333222211 2345677888899999999999988898889888
Q ss_pred HHHHHHHhc-------ccchHhHHHHHHHHHHHHccc--chhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHH
Q 002697 503 FATLEEEAA-------EELAPRLEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQ 573 (891)
Q Consensus 503 l~~l~~~~~-------~~~~~~l~~il~~l~~~l~~~--~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~ 573 (891)
...+++... -...||+..++...++.|... +.++++.++.|+|.++..+|+... ..++..+|.+.++++
T Consensus 544 ~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~--~eL~~~L~il~eRl~ 621 (1233)
T KOG1824|consen 544 CQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLG--NELPRTLPILLERLG 621 (1233)
T ss_pred HHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHh
Confidence 888888762 246789999998888888643 557888999999999999997665 678889999999888
Q ss_pred cCCCCCcchHhHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHh
Q 002697 574 QLPNSDKDLFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLG 652 (891)
Q Consensus 574 ~~~~~~~~~~~~~~~l~~i~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~ 652 (891)
+ +.....+..++..|+.+.-. ...|-+..+++.+...+.... +.++...+.++..+++.++
T Consensus 622 n----EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~--------------r~lr~~~l~a~~~L~~~~~ 683 (1233)
T KOG1824|consen 622 N----EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQ--------------RALRLATLTALDKLVKNYS 683 (1233)
T ss_pred c----hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHh
Confidence 5 33445677777777765433 556788888888887777542 3455566777777777776
Q ss_pred hhHHhhhcc---chHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHH-------------------------
Q 002697 653 SGIESLVAQ---SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSD------------------------- 704 (891)
Q Consensus 653 ~~~~~~~~~---~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~------------------------- 704 (891)
..+....-+ ..+.+++. +.+-.+-+.|+.++..++...+.......+.
T Consensus 684 ~~~~~~~~e~vL~el~~Lis----esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~ 759 (1233)
T KOG1824|consen 684 DSIPAELLEAVLVELPPLIS----ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLF 759 (1233)
T ss_pred ccccHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHH
Confidence 654433221 01222221 1111222222222222222222111111111
Q ss_pred --------------------------------------------------------------------------------
Q 002697 705 -------------------------------------------------------------------------------- 704 (891)
Q Consensus 705 -------------------------------------------------------------------------------- 704 (891)
T Consensus 760 f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa 839 (1233)
T KOG1824|consen 760 FQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFA 839 (1233)
T ss_pred HHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHH
Confidence
Q ss_pred ------------------HHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHH-hch-------------------------
Q 002697 705 ------------------FLDIAAKQLNTPKLKETVSVANNACWAIGELAV-KAR------------------------- 740 (891)
Q Consensus 705 ------------------i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~-~~~------------------------- 740 (891)
+...+++++.++ +++|+.+|.+|||.++. +.+
T Consensus 840 ~LslGElgr~~~~s~~~e~~~~iieaf~sp----~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlk 915 (1233)
T KOG1824|consen 840 LLSLGELGRRKDLSPQNELKDTIIEAFNSP----SEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLK 915 (1233)
T ss_pred HhhhhhhccCCCCCcchhhHHHHHHHcCCC----hHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHH
Confidence 112222222222 57899999999999875 211
Q ss_pred --------hhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCcc-------------------------
Q 002697 741 --------QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELV------------------------- 787 (891)
Q Consensus 741 --------~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~------------------------- 787 (891)
+.+.||++.|...|+.-..... .+.|.-++.|+|+++...|+.+
T Consensus 916 evi~~~svd~~~~~v~~IW~lL~k~cE~~e---egtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKf 992 (1233)
T KOG1824|consen 916 EVIVSASVDGLKPYVEKIWALLFKHCECAE---EGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKF 992 (1233)
T ss_pred HHHHHhccchhhhhHHHHHHHHHHhcccch---hhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeee
Confidence 1245777777777777766654 5667778999999996554432
Q ss_pred ---------CcchhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChhhhHhhHHHHhhHhhc
Q 002697 788 ---------SPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIAS 842 (891)
Q Consensus 788 ---------~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~ 842 (891)
-+++.+.+..++..+.+ .|.+.+..++..+...+++.|.-+...++.++..+.+
T Consensus 993 sisd~p~~id~~lk~~ig~fl~~~~d-pDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~ 1055 (1233)
T KOG1824|consen 993 SISDQPQPIDPLLKQQIGDFLKLLRD-PDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYS 1055 (1233)
T ss_pred eecCCCCccCHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHH
Confidence 23344566677777776 6777888999999999998998888888888887755
No 14
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.97 E-value=5.2e-24 Score=213.59 Aligned_cols=639 Identities=15% Similarity=0.156 Sum_probs=420.9
Q ss_pred CCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhcC-ChHHHHHHHHHHHHHHhhcccCch----HHHHHHH
Q 002697 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGW----LELLQAL 136 (891)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~-~~~vr~~~a~~l~~i~~~~~~~~w----~~ll~~L 136 (891)
+..+...++|+.++...-.. .++...-..+...+.....+. ...++...-.+++.++....|... +..+-.+
T Consensus 105 s~epr~~~~Aaql~aaIA~~---Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~ai 181 (858)
T COG5215 105 SPEPRFCTMAAQLLAAIARM---ELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAI 181 (858)
T ss_pred CCccHHHHHHHHHHHHHHHh---hCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHH
Confidence 34455555555554322211 133333334444444444543 344555555677777766544221 2222333
Q ss_pred HHHhcc--CChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchh
Q 002697 137 VTCLDS--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (891)
Q Consensus 137 ~~~l~~--~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~ 214 (891)
...... ++..+|.+|+.+|..-+......+..+ ...+.+++.++..-+.++.+++.+|+.|++.++...-+.
T Consensus 182 v~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E------~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~f 255 (858)
T COG5215 182 VMGALKNETTSAVRLAALKALMDSLMFVQGNFCYE------EERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKF 255 (858)
T ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcch------hhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 356899999999987666655555432 234778888899999999999999999999998764333
Q ss_pred hHHhHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHHHhhChhh--h---------------hHhHHHHHHHHHhhc----C
Q 002697 215 LFVSMDQYLQGLF-LLSNDPSAEVRKLVCAAFNLLIEVRPSF--L---------------EPHLRNLFEYMLQVN----K 272 (891)
Q Consensus 215 ~~~~~~~~l~~l~-~~~~~~~~~v~~~~~~~l~~l~~~~~~~--~---------------~~~l~~l~~~~~~~~----~ 272 (891)
+..++++.+-.+. ....+++.++..++.+.+..+++..-+. - ..-..+++|-++..+ .
T Consensus 256 m~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e 335 (858)
T COG5215 256 MQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE 335 (858)
T ss_pred HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC
Confidence 3344443332222 2345778899999999998877642110 0 111334555555543 3
Q ss_pred CCCHH---HHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCC
Q 002697 273 DTDDD---VALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (891)
Q Consensus 273 ~~~~~---v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 349 (891)
+.+++ +...|-.++.-+++.. .-..++|.+.- +-+. |
T Consensus 336 d~~~DdWn~smaA~sCLqlfaq~~-gd~i~~pVl~F----vEqn-------------------------i---------- 375 (858)
T COG5215 336 DYYGDDWNPSMAASSCLQLFAQLK-GDKIMRPVLGF----VEQN-------------------------I---------- 375 (858)
T ss_pred CccccccchhhhHHHHHHHHHHHh-hhHhHHHHHHH----HHHh-------------------------c----------
Confidence 33222 3334433333333321 11223332221 1000 0
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHHHcCc----chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchh
Q 002697 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK 425 (891)
Q Consensus 350 ~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~ 425 (891)
..++|.-|.+|.-+++.+...-.. .+++..+|.+...+.++. -.++..+.+|+|.++....+
T Consensus 376 -----------~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~---l~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 376 -----------RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC---LWVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred -----------cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce---eehhhHHHHHHHHHHHHHHH
Confidence 123588999999999887655432 457788888888888776 67788889999999998877
Q ss_pred hhh--hhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhC--CCcchhhHHHHHHHHHHHh--cCCCHHHHHHH
Q 002697 426 GLY--PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG--HQNGREQFEKVLMGLLKRI--LDTNKRVQEAA 499 (891)
Q Consensus 426 ~~~--~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~l--~d~~~~v~~~a 499 (891)
.+. .|++..+...+..+.| +|.+-..++|....+.+++++..+ +....+++..++..|++.- .+++...|..+
T Consensus 442 ~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~ 520 (858)
T COG5215 442 IISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSL 520 (858)
T ss_pred hcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 665 4666677777777766 688888999999999999987642 3345667778888887653 35567889999
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHHHcc----c-------c----hhHHHHHHHHHHHHHHHhcccCCchhhhhhh
Q 002697 500 CSAFATLEEEAAEELAPRLEIILQHLMMAFGK----Y-------Q----RRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (891)
Q Consensus 500 ~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~----~-------~----~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l 564 (891)
.++|+.++..+++.+.+.+..+.....+-+.. . + ++.+...+..+..+++..+.++. +..+++
T Consensus 521 fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie--~v~D~l 598 (858)
T COG5215 521 FSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE--DVEDQL 598 (858)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--cHHHHH
Confidence 99999999998877766554444433333321 1 1 13344667888889999998887 788999
Q ss_pred hHHHHHHHHcCCCCCcch--HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhh
Q 002697 565 MPPLIAKWQQLPNSDKDL--FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLD 642 (891)
Q Consensus 565 ~~~l~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~ 642 (891)
|..++..+++. ++.. ..+.-.++.+...+|+.|..|++.++|.+.+.++.. |..+...+..
T Consensus 599 m~Lf~r~les~---~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~--------------d~~v~~~avg 661 (858)
T COG5215 599 MELFIRILEST---KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCT--------------DRFVLNSAVG 661 (858)
T ss_pred HHHHHHHHhcc---CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcch--------------hHHHHHHHHH
Confidence 99999999874 2322 678889999999999999999999999998877532 6677788999
Q ss_pred hHHHHHHHHhhhHHhhhccchHHHHHHHHhcCC--ChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcC
Q 002697 643 LLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDD--ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKE 720 (891)
Q Consensus 643 ~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 720 (891)
+++.++..+|.+|.+|-+. ++.-|..+++++ ..+++-..+.++|||+...+..|.+|++.++-.+...-.-....+
T Consensus 662 lvgdlantl~~df~~y~d~--~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~ 739 (858)
T COG5215 662 LVGDLANTLGTDFNIYADV--LMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSD 739 (858)
T ss_pred HHHHHHHHhhhhHHHHHHH--HHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999986 889999998764 346778889999999999999999999999866554322111111
Q ss_pred c---hhHhhhHHHH-------HHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCc
Q 002697 721 T---VSVANNACWA-------IGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPEL 786 (891)
Q Consensus 721 ~---~~v~~~a~~a-------lg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 786 (891)
+ .+.|.++..+ +|.-.+.-...+.||+..+...+--+-.++. ..++....+.+.+|.+...+|..
T Consensus 740 ~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~-~se~~traalGLigDla~mfpkg 814 (858)
T COG5215 740 EVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPN-GSEAHTRAALGLIGDLAGMFPKG 814 (858)
T ss_pred ceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCc-cchhHHHHHHHHHHHHHHhCCCc
Confidence 1 1334444333 3322222224477999999987766666664 24556667888999999877765
No 15
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.95 E-value=9.9e-21 Score=200.97 Aligned_cols=741 Identities=16% Similarity=0.218 Sum_probs=474.9
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHh-cCCC-hHHHHHHHhhcc-CCCCHHHHHHHHHHHHHhHHhhhc----c---
Q 002697 17 ICRLLEQQIS-PSSTADKSQIWQQLQQYS-QFPD-FNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYK----S--- 85 (891)
Q Consensus 17 l~~~l~~~~s-~d~~~~r~~a~~~L~~~~-~~p~-~~~~l~~il~~~-~~~~~~~R~~a~~~Lk~~i~~~w~----~--- 85 (891)
+...+-..++ .+.+ +++.|-+.+.-+. +-++ -+.++.+-|.++ -+...+.|-.+++.||..+..--+ .
T Consensus 48 vv~~lLklL~D~ngE-VQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~ 126 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGE-VQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAA 126 (1233)
T ss_pred HHHHHHHHHhccCcH-HHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccccc
Confidence 3333333333 4555 9999998887543 3333 122233322222 134567788888888877744221 0
Q ss_pred ----------------------------------------CChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcc
Q 002697 86 ----------------------------------------MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG 125 (891)
Q Consensus 86 ----------------------------------------~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~ 125 (891)
+-++.-..+...++..+..+...||+.+..+++.++...+
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 0011122223333344455677899999999999999988
Q ss_pred cCchHHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhh---cCCCHHHHHHHH
Q 002697 126 IAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF---QSPHTSLRKLSL 201 (891)
Q Consensus 126 ~~~w~~ll~~L~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l---~~~~~~vr~~al 201 (891)
...+.+++..|...+..+ ++......+.+|+.++...+..+.+ +++.++|.+.+++ +..+.+.|...+
T Consensus 207 ~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~--------h~~~ivp~v~~y~~~~e~~dDELrE~~l 278 (1233)
T KOG1824|consen 207 RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGS--------HLDKIVPLVADYCNKIEEDDDELREYCL 278 (1233)
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhc--------ccchhhHHHHHHhcccccCcHHHHHHHH
Confidence 888999999999888765 5667778999999999988877654 4688999999999 556789999999
Q ss_pred HHHHHHhcccchhhHHhHHHHHHHHHHhhC-CC---------------------------------CHHHHHHHHHHHHH
Q 002697 202 GSVNQFIMLMPSALFVSMDQYLQGLFLLSN-DP---------------------------------SAEVRKLVCAAFNL 247 (891)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~---------------------------------~~~v~~~~~~~l~~ 247 (891)
+++..|+...|.++.++.+.+++.+.+.+. || ++.||+++.+|+..
T Consensus 279 Qale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a 358 (1233)
T KOG1824|consen 279 QALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEA 358 (1233)
T ss_pred HHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHH
Confidence 999999999999999999988888877542 11 15699999999999
Q ss_pred HHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCch-------------------hhHHhhhhhhHH
Q 002697 248 LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPH-------------------ENLKEFLPRLVP 308 (891)
Q Consensus 248 l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~-------------------~~~~~~l~~li~ 308 (891)
++....+.+......+-+.++..+++.++.|+...++.+..+......+ ..+..-.+.++.
T Consensus 359 ~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVk 438 (1233)
T KOG1824|consen 359 VISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVK 438 (1233)
T ss_pred HHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHH
Confidence 9999999888888889999999999999999999998887765541100 111111112222
Q ss_pred HHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCc---c
Q 002697 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---E 385 (891)
Q Consensus 309 ~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~---~ 385 (891)
.+-..|. + .....|..+...|..+...+++ +
T Consensus 439 ai~~qlr-----------------------------------------~-----ks~kt~~~cf~lL~eli~~lp~~l~~ 472 (1233)
T KOG1824|consen 439 AIQKQLR-----------------------------------------E-----KSVKTRQGCFLLLTELINVLPGALAQ 472 (1233)
T ss_pred HHHHHHh-----------------------------------------h-----ccccchhhHHHHHHHHHHhCcchhhh
Confidence 2211111 0 0112467778888888888765 5
Q ss_pred hhhhhHHHHHHhhccCCCcchHHHHHHH-HHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHH
Q 002697 386 ILPTLMPVIQAKLSASGDEAWKDREAAV-LALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (891)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aa~-~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 464 (891)
.++.++|-+...+++.+.- -..+.-++ +..+.+....++.+.++++.+.|.+..+..|+.+.+-..|.....++++.+
T Consensus 473 ~~~slvpgI~~~l~DkSss-s~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvi 551 (1233)
T KOG1824|consen 473 HIPSLVPGIIYSLNDKSSS-SNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVI 551 (1233)
T ss_pred cccccchhhhhhcCCccch-HHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHh
Confidence 5677888888888764311 23344444 445566777778899999999999999999999999999999999999988
Q ss_pred hhhhC--CCcchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccch------
Q 002697 465 VQDIG--HQNGREQFEKVLMGLLKRIL--DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR------ 534 (891)
Q Consensus 465 ~~~~~--~~~~~~~~~~~l~~l~~~l~--d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~------ 534 (891)
.+... ..+..+++.+++...++.+. |.+..||++|..+++.++-..++.+...++.+++.+++-+++.-.
T Consensus 552 rpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~Avk 631 (1233)
T KOG1824|consen 552 RPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVK 631 (1233)
T ss_pred cccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHH
Confidence 65411 13457789999999999886 567899999999999999888877777777777777777654311
Q ss_pred ----------------------------------hHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCc
Q 002697 535 ----------------------------------RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDK 580 (891)
Q Consensus 535 ----------------------------------~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 580 (891)
..+...+.++..+.+..+..+. +..++.++.-+...+. ..+.
T Consensus 632 Alt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~-~~~~e~vL~el~~Lis---esdl 707 (1233)
T KOG1824|consen 632 ALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIP-AELLEAVLVELPPLIS---ESDL 707 (1233)
T ss_pred HHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHhhhhhh---HHHH
Confidence 0111122333333333333332 1112222211111111 1222
Q ss_pred ch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH----------------HhhcCccc---------CCCCc-
Q 002697 581 DL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQL----------------AKVDSVAA---------GAQYD- 633 (891)
Q Consensus 581 ~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~----------------~~~~~~~~---------~~e~d- 633 (891)
.+ ..++.++..++.............+++.++..++++.. ....++-+ ..-|+
T Consensus 708 hvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~ 787 (1233)
T KOG1824|consen 708 HVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQ 787 (1233)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccc
Confidence 22 45566666666544443333333344444433332110 00000000 00000
Q ss_pred ------hhHHHHHhhhHHHHHHHHhhh-----------H-----------------------HhhhccchHHHHHHHHhc
Q 002697 634 ------KEFVVCCLDLLSGLAEGLGSG-----------I-----------------------ESLVAQSNLRDMLLQCCM 673 (891)
Q Consensus 634 ------~~~~~~~~~~l~~l~~~~~~~-----------~-----------------------~~~~~~~~l~~~l~~~~~ 673 (891)
+...-....+...+..+++.. + .+..+++.+...+.++++
T Consensus 788 ~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~ 867 (1233)
T KOG1824|consen 788 VTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFN 867 (1233)
T ss_pred cccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcC
Confidence 000000111111222222210 0 011122567788889999
Q ss_pred CCChHHHHHHHHHHhHHHHhchHh----------------------------------hHHhHHHHHHHHHHhcCCCCCc
Q 002697 674 DDASDVRQSAFALLGDLARVCPVH----------------------------------LQARLSDFLDIAAKQLNTPKLK 719 (891)
Q Consensus 674 ~~~~~vr~~a~~~l~~l~~~~~~~----------------------------------~~~~~~~i~~~l~~~l~~~~~~ 719 (891)
+++.+|+.+|-.++|.++.+.-+. +.|+.+.|+..+++.....
T Consensus 868 sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~--- 944 (1233)
T KOG1824|consen 868 SPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECA--- 944 (1233)
T ss_pred CChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccc---
Confidence 999999999999999776532112 2355667777777777666
Q ss_pred CchhHhhhHHHHHHHHHHhchh----------------------------------hhhhHHHHHHHHHHHHhcCChhhh
Q 002697 720 ETVSVANNACWAIGELAVKARQ----------------------------------EISPIVMTVVLCLVPILKHSEELN 765 (891)
Q Consensus 720 ~~~~v~~~a~~alg~l~~~~~~----------------------------------~~~~~~~~il~~l~~~l~~~~~~~ 765 (891)
.+.+|+..+.|+|.++..-++ .+.+++.+-+......+.+++
T Consensus 945 -eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpD--- 1020 (1233)
T KOG1824|consen 945 -EEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPD--- 1020 (1233)
T ss_pred -hhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCc---
Confidence 457899999999999743221 145677777778888888885
Q ss_pred hhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccC----------------CCC-chHHHHHHHHHHHHHhh
Q 002697 766 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSM----------------IRD-DTEKEDAFRGLCAMVKA 824 (891)
Q Consensus 766 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~----------------~~~-~~e~~~~~~~l~~l~~~ 824 (891)
..+|+.+..++...+..-|..+..-++.++|.+.+--.. ..| .+-|+.+|+++..++..
T Consensus 1021 l~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLds 1096 (1233)
T KOG1824|consen 1021 LEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDS 1096 (1233)
T ss_pred hhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHh
Confidence 789999999999999888888777777777766532111 111 34588999999999875
No 16
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.95 E-value=9.4e-22 Score=203.03 Aligned_cols=663 Identities=14% Similarity=0.142 Sum_probs=450.8
Q ss_pred CCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-c-CCC-hHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHh--
Q 002697 7 WQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYS-Q-FPD-FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT-- 81 (891)
Q Consensus 7 ~~p~~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~-~-~p~-~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~-- 81 (891)
.+|++.....+..+|....+..+. .|+.|..+|..-. + .++ .+..++.++.+. +.+..-||+-.-.+-+.+.+
T Consensus 355 L~~~e~kEr~i~~llLkvKNG~pp-mRk~~LR~ltdkar~~ga~~lfnqiLpllMs~-tLeDqerhllVkvidriLyklD 432 (1172)
T KOG0213|consen 355 LEDEEGKERKIMRLLLKVKNGTPP-MRKSALRILTDKARNFGAGPLFNQILPLLMSP-TLEDQERHLLVKVIDRILYKLD 432 (1172)
T ss_pred cCcccccHHHHHHHHHhhcCCCch-hHHHHHHHHHHHHHhhccHHHHHHHHHHHcCc-cccchhhhhHHHHHHHHHHhhc
Confidence 345666667788888888888888 9999999996533 2 233 223344455543 67778888877776666633
Q ss_pred ----hhcc----------CChhhHHH-----HHHhHh---------hhhh----cCChHHHHHHHHHHHHHHhhcccCch
Q 002697 82 ----AYKS----------MSPSNQQY-----IKSELL---------PCLG----AADRHIRSTVGTIVSVVVQLGGIAGW 129 (891)
Q Consensus 82 ----~w~~----------~~~~~~~~-----i~~~ll---------~~L~----~~~~~vr~~~a~~l~~i~~~~~~~~w 129 (891)
.|-+ +.++.... |...|. ..+. +.+..||+..+.+++.++... .-
T Consensus 433 dlvrpYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal---gi 509 (1172)
T KOG0213|consen 433 DLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL---GI 509 (1172)
T ss_pred ccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh---Cc
Confidence 1211 23332211 222121 1221 347889999999999999876 56
Q ss_pred HHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 002697 130 LELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (891)
Q Consensus 130 ~~ll~~L~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (891)
|.++|+|...+.|. ++..|+.++++..+|+...+...- .++..++..+-.++.|.+..||.-+..++..+.
T Consensus 510 p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvl--------phl~~lv~ii~~gl~De~qkVR~itAlalsala 581 (1172)
T KOG0213|consen 510 PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVL--------PHLKPLVKIIEHGLKDEQQKVRTITALALSALA 581 (1172)
T ss_pred HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhh--------hhhHHHHHHHHHhhcccchhhhhHHHHHHHHHH
Confidence 89999999999987 899999999999999987766433 245677888888889999999999999999988
Q ss_pred cccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhH-hHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 002697 209 MLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP-HLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (891)
Q Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~v~~~a~~~l~ 287 (891)
+...+.-...|+.++..||+.+...........+++++.++......... |-.+++-.+++-...+|++.....+.++.
T Consensus 582 eaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~ 661 (1172)
T KOG0213|consen 582 EAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVK 661 (1172)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 87665556778888999998776544445556667777666544333333 34577778888888999999999999999
Q ss_pred HhhccCC-chhhHH-hhhhhhHHHHH-hhccCChhhhh-hhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccc
Q 002697 288 SYFEAQL-PHENLK-EFLPRLVPVLL-SNMIYADDDES-LVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVN 363 (891)
Q Consensus 288 ~l~~~~~-~~~~~~-~~l~~li~~ll-~~l~~~~~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~ 363 (891)
.++.... ..+.++ ..++.++.... ..|........ ..+....-....+..++-.+. .+++.||.
T Consensus 662 qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~-------v~~lkde~----- 729 (1172)
T KOG0213|consen 662 QCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRV-------VLDLKDEP----- 729 (1172)
T ss_pred HHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHH-------hhhhcccc-----
Confidence 9887621 112211 11222222221 11211000000 000000000000000000000 01111111
Q ss_pred cccHHHHHHHHHHHHHHHcCc-----chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHH
Q 002697 364 VWNLRKCSAAALDVLSNVFGD-----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFL 438 (891)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l 438 (891)
-.+|+....+.+.+...+|. .....++.-+...++.++ -.. ..-+..+|.++......+++|+++|+..+
T Consensus 730 -e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt---t~d-~vml~gfg~V~~~lg~r~kpylpqi~sti 804 (1172)
T KOG0213|consen 730 -EQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT---TED-SVMLLGFGTVVNALGGRVKPYLPQICSTI 804 (1172)
T ss_pred -HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc---cch-hhhhhhHHHHHHHHhhccccchHHHHHHH
Confidence 13789999999999888874 223444555555555443 111 13456788888888888899999999999
Q ss_pred hhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-cccchHh
Q 002697 439 IPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPR 517 (891)
Q Consensus 439 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~-~~~~~~~ 517 (891)
+..|+++.+.||..|+..+++++..+... .....+..+=..|.+.+....+.|--....|+..++... -....|-
T Consensus 805 L~rLnnksa~vRqqaadlis~la~Vlktc----~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP 880 (1172)
T KOG0213|consen 805 LWRLNNKSAKVRQQAADLISSLAKVLKTC----GEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP 880 (1172)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhc----cHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC
Confidence 99999999999999999999999877542 122333444445667788888999999999999998876 3557778
Q ss_pred HHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHh
Q 002697 518 LEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQAL 596 (891)
Q Consensus 518 l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~ 596 (891)
+..++|.|..+|++...+++...++.++.++....+.....++..... -|++.+.. -.+.+ .++.+++|.|++++
T Consensus 881 i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcf-eLlelLka---hkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 881 IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICF-ELLELLKA---HKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHH---HHHHHHHHHHhhhhHHHHhc
Confidence 899999999999999999999999999999987665443223333222 23344443 23444 68899999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCC
Q 002697 597 GAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDA 676 (891)
Q Consensus 597 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 676 (891)
|.. .++..+++-|... ++..|.|+.-+++.+++.+|. | .++|.|+.-.+.+.
T Consensus 957 GPq------dVLatLlnnLkvq--------------eRq~RvcTtvaIaIVaE~c~p----F----tVLPalmneYrtPe 1008 (1172)
T KOG0213|consen 957 GPQ------DVLATLLNNLKVQ--------------ERQNRVCTTVAIAIVAETCGP----F----TVLPALMNEYRTPE 1008 (1172)
T ss_pred CHH------HHHHHHHhcchHH--------------HHHhchhhhhhhhhhhhhcCc----h----hhhHHHHhhccCch
Confidence 973 3555555544421 666777777777777777664 2 37888887777888
Q ss_pred hHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhc
Q 002697 677 SDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (891)
Q Consensus 677 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~ 739 (891)
..|.+-.+..++-+.++.++.-..|+-.+.|.+...|.+. +..-|+.|+.++..++...
T Consensus 1009 ~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr----D~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1009 ANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR----DLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc----cHHHHHHHHHHHHHHhcCC
Confidence 8899989999999999999888899999999999999998 6788999999999888764
No 17
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.1e-21 Score=203.19 Aligned_cols=641 Identities=16% Similarity=0.198 Sum_probs=411.3
Q ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHH
Q 002697 15 NEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (891)
Q Consensus 15 ~~l~~~l~~~~s~--d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~ 92 (891)
+.+.|++.++..| |.. .|++|.+++++++..|+.|..+.+++... +.++.+|..+...|...++..+...+...++
T Consensus 3 ddiEqav~a~ndp~vdsa-~KqqA~~y~~qiKsSp~aw~Icie~l~~~-ts~d~vkf~clqtL~e~vrekyne~nl~elq 80 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSA-TKQQAIEYLNQIKSSPNAWEICIELLINE-TSNDLVKFYCLQTLIELVREKYNEANLNELQ 80 (980)
T ss_pred hHHHHHHHhhCCCcccHH-HHHHHHHHHHhhcCCccHHHHHHHHHHhh-cccchhhhhhHHHHHHHHHHhhccCCHHHHH
Confidence 4577777777766 666 99999999999999999999999999853 5889999999999999998888889999999
Q ss_pred HHHHhHhhhhh-----cC----ChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCCh-hHHhHHHHHHHHHHhhc
Q 002697 93 YIKSELLPCLG-----AA----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICEDI 162 (891)
Q Consensus 93 ~i~~~ll~~L~-----~~----~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~-~~r~~al~~L~~l~~~~ 162 (891)
.+|..++..+. ++ .+.++++++++++.++..+.+..|+.++..++..+.-+.. .-...-+++|..+-.+.
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEi 160 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEI 160 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHh
Confidence 99999987663 22 6789999999999999999899999999998887764432 12333344443333332
Q ss_pred hhcc--ccC----CCCCC-----CcchhhhHHHHHHhhc---C-CCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHH
Q 002697 163 PQVL--DSD----VPGLA-----ECPINIFLPRLLQFFQ---S-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLF 227 (891)
Q Consensus 163 ~~~~--~~~----~~~~~-----~~~~~~l~~~l~~~l~---~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~ 227 (891)
.+.- ... ..... +..++++....++.+. . .++.+-..+++|++.++.|+.-.+.. -+.+++.++
T Consensus 161 ad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy 239 (980)
T KOG2021|consen 161 ADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA-NDYFLNLLY 239 (980)
T ss_pred hhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh-chhHHHHHH
Confidence 2110 000 00000 1334555555555553 2 38888999999999999987644332 234566666
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHhhChhh----------------------------------------------------
Q 002697 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSF---------------------------------------------------- 255 (891)
Q Consensus 228 ~~~~~~~~~v~~~~~~~l~~l~~~~~~~---------------------------------------------------- 255 (891)
..++ .+++|.+||.|+..++...-+-
T Consensus 240 ~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~l 317 (980)
T KOG2021|consen 240 KFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQL 317 (980)
T ss_pred HHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhh
Confidence 6554 3567777777776555331100
Q ss_pred -----------hhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc----CCchhhHHhhhhhhHHHHHhhccCChhh
Q 002697 256 -----------LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYADDD 320 (891)
Q Consensus 256 -----------~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~~~l~~li~~ll~~l~~~~~d 320 (891)
....+..+++++++.+.+.++++....+.||...... +.....-+..+.+++..+...+++.+..
T Consensus 318 nseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy 397 (980)
T KOG2021|consen 318 NSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMY 397 (980)
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHh
Confidence 0112334566667777777777766677776654322 2222233445667777777777775432
Q ss_pred hhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhcc
Q 002697 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA 400 (891)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~ 400 (891)
. |+ |+-. ++|++...-++|+---..++.++..-+..++..+-..+...+.+
T Consensus 398 ~--nd--------------------------dn~t-g~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~n 448 (980)
T KOG2021|consen 398 F--ND--------------------------DNVT-GDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMN 448 (980)
T ss_pred h--cc--------------------------cCCC-CchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 1 11 0101 11222223368888888888888877766666666667666665
Q ss_pred CCCcchHHHHHHHHHHHHHhhcchhh--------h--hhhHHHHHHHHhh--hcCCCChHHHHHHHHHHHhhHHHHhhhh
Q 002697 401 SGDEAWKDREAAVLALGAIAEGCIKG--------L--YPHLSEIVAFLIP--LLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (891)
Q Consensus 401 ~~~~~~~~r~aa~~~l~~l~~~~~~~--------~--~~~l~~i~~~l~~--~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 468 (891)
..+.+|..-+.|+..+-.++++.... + ...+..+++.+.. .+.++|+.|.--.+..+-|+...+..
T Consensus 449 s~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~-- 526 (980)
T KOG2021|consen 449 SKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFST-- 526 (980)
T ss_pred CCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhc--
Confidence 54556999999999999998876421 1 1334455555544 35678999999999999998887753
Q ss_pred CCCcchhhHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccc------------h
Q 002697 469 GHQNGREQFEKVLMGLLK--RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ------------R 534 (891)
Q Consensus 469 ~~~~~~~~~~~~l~~l~~--~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~------------~ 534 (891)
...++.-++...+. ++...+..||.+|.+.+.++++..++.+.||++.++.++...|.... .
T Consensus 527 ----esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~f 602 (980)
T KOG2021|consen 527 ----ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIF 602 (980)
T ss_pred ----chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccc
Confidence 34455556655553 45566789999999999999999999999999999999999993211 1
Q ss_pred hHHHHHHHHHHHHHHHhcc-cCCchhhhhhhhHHHHH---------HHHcCCCCCcch----HhHHHHHHHHHHHhcccc
Q 002697 535 RNLRIVYDAIGTLADAVGF-ELNQPVYLDILMPPLIA---------KWQQLPNSDKDL----FPLLECFTSIAQALGAGF 600 (891)
Q Consensus 535 ~~~~~~~~al~~l~~~~~~-~~~~~~~~~~l~~~l~~---------~l~~~~~~~~~~----~~~~~~l~~i~~~~~~~~ 600 (891)
......++++|.++....- ...+..|.+.++.+++. .+.+.. +.+.. ...+-+++.+++.+....
T Consensus 603 ddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde-~~pv~Ia~c~~~lmaig~lakgf~~rl 681 (980)
T KOG2021|consen 603 DDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDE-ASPVVIAECHHILMAIGTLAKGFHIRL 681 (980)
T ss_pred cccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHHhhcccccC
Confidence 2345678999887753211 11122566655554433 222211 11211 122333445554433322
Q ss_pred cc----chHHHHHHH----HHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHh
Q 002697 601 TQ----FAQPVFQRC----INIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCC 672 (891)
Q Consensus 601 ~~----~~~~i~~~l----~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 672 (891)
.+ -.-.++..+ +..+.... .-..+|.++-..+++++..+|+..-|++|+ +...+ +
T Consensus 682 vt~~qvg~~~vf~~~ldvil~~ls~f~------------k~E~iRsavrft~hRmI~~lg~~vlPfipk--lie~l---L 744 (980)
T KOG2021|consen 682 VTENQVGNMVVFSNILDVILVTLSFFN------------KFENIRSAVRFTFHRMIPILGNKVLPFIPK--LIELL---L 744 (980)
T ss_pred cchhcccHHHHHHHHHHHHHHHHhhcc------------ccchhHHHHHHHHHHHHHhcchhhhcchHH--HHHHH---H
Confidence 11 111122222 22222110 133677777788999999999999998876 55554 4
Q ss_pred cCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhc
Q 002697 673 MDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQL 713 (891)
Q Consensus 673 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 713 (891)
++.+......-+.++..++..+..++.+.+++++|.+...+
T Consensus 745 ~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rI 785 (980)
T KOG2021|consen 745 SSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRI 785 (980)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55565555667788888888887788888877777665543
No 18
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.93 E-value=8.9e-21 Score=202.18 Aligned_cols=747 Identities=15% Similarity=0.191 Sum_probs=406.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhcc-----CChhhHH
Q 002697 18 CRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQQ 92 (891)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~-----~~~~~~~ 92 (891)
...+...+|+++. .+|.||+.|+++.++++|...|.++..+. ..+..+|..|.+.+||.|.++|+. +.++...
T Consensus 7 v~~~~~aqs~~p~-s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~-~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v 84 (947)
T COG5657 7 VKQLDLAQSPDPP-SVKCAEERLRQWEKQHGFALKLLSINLSA-FNSMSLRWAALIQFKNYIDKHWREENGNSILPDENV 84 (947)
T ss_pred HHHHHhhcCCCCc-hHhhHHHHHHhhhccccHHHHHHHHHhcc-ccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccch
Confidence 4455677899999 99999999999999999999999998853 689999999999999999999985 5566667
Q ss_pred HHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCC
Q 002697 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (891)
Q Consensus 93 ~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~ 172 (891)
.||..++.++-+.+....-+.|.+++.||+.+.|..||.|++.|...+++.+-..-.+.+.++..+++.+......+ .
T Consensus 85 ~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd--~ 162 (947)
T COG5657 85 LIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSD--A 162 (947)
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccH--H
Confidence 99999999998877777779999999999999999999999999999999887788889999999998887655433 2
Q ss_pred CCCcchhhhHHHHHHhhcCC--CHH-----------HHHHHHHHHHHHhcc----cchhhHHhHHHHHHHHHHhhCCCCH
Q 002697 173 LAECPINIFLPRLLQFFQSP--HTS-----------LRKLSLGSVNQFIML----MPSALFVSMDQYLQGLFLLSNDPSA 235 (891)
Q Consensus 173 ~~~~~~~~l~~~l~~~l~~~--~~~-----------vr~~al~~l~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~ 235 (891)
+|....+.+.+.+.+++... ... .-..+++.+..+... .++.+..+++.++.....++.-.++
T Consensus 163 lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~klls~~~~ 242 (947)
T COG5657 163 LFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLSYSNP 242 (947)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcch
Confidence 22223344444444444221 111 112244444444322 3444556666667666666543322
Q ss_pred HH-------------HHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHhhccCC--c
Q 002697 236 EV-------------RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT-----DDDVALEACEFWHSYFEAQL--P 295 (891)
Q Consensus 236 ~v-------------~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~v~~~a~~~l~~l~~~~~--~ 295 (891)
.. ....|..+..+...+|+.+.+++-+.++.++..+.+- .+-+...++.++....+++. .
T Consensus 243 ~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~k~~irk~ 322 (947)
T COG5657 243 VLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVIKYPIRKT 322 (947)
T ss_pred hhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhhccccHHH
Confidence 22 2336777777888889998887777777766654431 23345566677766666421 1
Q ss_pred hhhH----HhhhhhhHHHHH-hhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHH
Q 002697 296 HENL----KEFLPRLVPVLL-SNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC 370 (891)
Q Consensus 296 ~~~~----~~~l~~li~~ll-~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~ 370 (891)
.+.+ .....+++..++ ..+...++|.|.|++||. +|+|.. . ..+.+.++|.+
T Consensus 323 ~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~-------eyire~-----------s-----~~dye~~vr~~ 379 (947)
T COG5657 323 AEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPL-------EYIREQ-----------S-----KTDYEVNVRPC 379 (947)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHH-------HHHHhh-----------c-----cccchhhhhHH
Confidence 1111 234455566554 566677788888877664 233310 0 01123468999
Q ss_pred HHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCC----C
Q 002697 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK----F 446 (891)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~----~ 446 (891)
+...++.+-..+|.-+.+.+...+.+....++-..-..+..++.++-.+.......+-+...-......+.+.+| +
T Consensus 380 ~~~~l~~~f~~~~~i~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~ 459 (947)
T COG5657 380 IENELKDLFDVFGRIAVGHELTVIESEATTPNILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIH 459 (947)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCce
Confidence 999999999888865567777777776665410001222333333322322222223233333333334444443 2
Q ss_pred hHHHHH-HHHHHH-hhHHHHhhhhCCCcchhh-HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhcccchHhHHHH
Q 002697 447 PLIRSI-SCWTLS-RFSKFIVQDIGHQNGREQ-FEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEAAEELAPRLEII 521 (891)
Q Consensus 447 ~~vr~~-a~~~l~-~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~l~d~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~i 521 (891)
.+++.. +...+. +.--...+. ..... -.+.+..+.....|.. -.+|.+....+....-. +....+-++++
T Consensus 460 ~ri~~~~i~~i~~~r~~l~~~~~----~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~-~~~~~~~lenl 534 (947)
T COG5657 460 LRILRSRIAYILTFRNQLDSSEL----SESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFS-VCSKIGLLENL 534 (947)
T ss_pred eEEehhccchheechhhhhhhhh----hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc-cccccccHHHH
Confidence 333222 222211 111000000 00111 1111122222222211 23444444433332221 22333445666
Q ss_pred HHHHHHHHcccch-hHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcch----HhHHHHHHHHHHHh
Q 002697 522 LQHLMMAFGKYQR-RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL----FPLLECFTSIAQAL 596 (891)
Q Consensus 522 l~~l~~~l~~~~~-~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~----~~~~~~l~~i~~~~ 596 (891)
+-.+.+.+...+. ..+..++++++.++...++... |....+++.+.+.|.... +++.. ....+.++.++.
T Consensus 535 ~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~--pl~~~il~~L~~lv~~~~-knps~p~~~h~~fe~I~al~~-- 609 (947)
T COG5657 535 ILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIA--PLGSEILQLLDNLVEINA-KNPSNPQFAHYTFEDIGALVF-- 609 (947)
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhh--hhHHHHHHHHHHHHHHHc-cCCccHHHHHHHHHHHHHHHH--
Confidence 6556666655443 4566889999999998888877 788888888888777544 22322 334444444433
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHH-hcCC
Q 002697 597 GAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQC-CMDD 675 (891)
Q Consensus 597 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~~ 675 (891)
.+....+..++.++..+...... ..+|+-.++....+..++.+.+.++..+ ++. +...+..- +..+
T Consensus 610 --~~~~~~~~~ip~l~~~l~p~~~~------l~~ed~~El~~~~lq~~s~l~e~f~~~~---lp~--v~~~l~q~~~~t~ 676 (947)
T COG5657 610 --LKSGMCEITIPTLVLALVPEFPV------LLSEDATELWSYVLQLLSILPEHFSGDV---LPS--VVKILRQPSLATE 676 (947)
T ss_pred --hhhcccccchHHHHHhhCccchh------hhhhhHHHHHHHHHHHHhhcchhhcCCc---Cch--HHHHHhcccCchH
Confidence 33444444555554433321000 0001011222223333333434333321 111 22222110 1111
Q ss_pred ChHHHH---HHHHHHhHHHHhchHhhHH-hHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhh--hhhHHHH
Q 002697 676 ASDVRQ---SAFALLGDLARVCPVHLQA-RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQE--ISPIVMT 749 (891)
Q Consensus 676 ~~~vr~---~a~~~l~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~--~~~~~~~ 749 (891)
-...+. +.+.++.......+.-+.. .+..++-.+...+.. +.-+..+...+........+ ..||+..
T Consensus 677 ll~~~~~I~~~~~Ll~~~~~~~~~if~~s~~~~vL~i~~~ll~~-------e~~~~~~f~~~~~v~~l~~~~i~~~~v~~ 749 (947)
T COG5657 677 LLPTKLEILKSYRLLDNPILTTGYIFKSSGFQPVLGILQYLLGS-------EPHDALCFLNLTVVETLYLENIYEPYVNL 749 (947)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHhc-------chHHHHHHhhHHHHHHhHHHHHHhhcHHH
Confidence 111121 1222222222222211111 122333344444333 34455666666655444322 5678888
Q ss_pred HHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhh------cCCccCcchh--------HHHHHHHhhccCCCCchHHHHHH
Q 002697 750 VVLCLVPILKHSEELNKSLIENSAITLGRLAWV------CPELVSPHME--------HFMQPWCIALSMIRDDTEKEDAF 815 (891)
Q Consensus 750 il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~~~~--------~~l~~~~~~l~~~~~~~e~~~~~ 815 (891)
+.-.++..+.++. ........+..++++..+ ++..+ .... +++..|.-.-....+.-+|+...
T Consensus 750 i~~lll~rl~ns~--~~r~v~~~i~~fs~v~~k~~~t~~~dnlI-~ki~q~k~i~i~~l~g~~Il~~~~i~~~~drKi~~ 826 (947)
T COG5657 750 IFVLLLSRLKNSK--TERFVIKIIHVFSLVSFKDSLTVGCDNLI-SKINQTKNILIVQLYGNWILGFDEIHDSKDRKIHL 826 (947)
T ss_pred HHHHHHHHhhccc--chHHHHHhheeeEEechhhccccCChHHH-HHHHHHHHHHHHHHHhceeeccchhccHHHHHHHH
Confidence 7777777777664 344444444455555443 22222 1111 22233332223345556777778
Q ss_pred HHHHHHHhh
Q 002697 816 RGLCAMVKA 824 (891)
Q Consensus 816 ~~l~~l~~~ 824 (891)
-|+.+++..
T Consensus 827 ig~snllrt 835 (947)
T COG5657 827 IGLSNLLRT 835 (947)
T ss_pred HhHHhhhhh
Confidence 888888754
No 19
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=9.1e-16 Score=163.41 Aligned_cols=763 Identities=14% Similarity=0.121 Sum_probs=438.1
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhH
Q 002697 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (891)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~ 91 (891)
...+++..++....++.+.+....++++|+.++..|..|..-..++.. +...++|.++|+.|.-.|.++|...+++.+
T Consensus 4 ~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~--~k~~evqyFGAltL~~ki~~~~e~~~~~~~ 81 (982)
T KOG2022|consen 4 DLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP--DKSSEVQYFGALTLHDKINTRWEECPANEA 81 (982)
T ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC--CchhHHHHHhHHHHHHHHHhhhccCChhHH
Confidence 356788888989998855448888999999999999999998998875 567788999999999999999999999999
Q ss_pred HHHHHhHhhhhh--cC-ChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccC-Ch--hHHhHHHHHHHHHHhhchhc
Q 002697 92 QYIKSELLPCLG--AA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DI--NHMEGAMDALSKICEDIPQV 165 (891)
Q Consensus 92 ~~i~~~ll~~L~--~~-~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~-~~--~~r~~al~~L~~l~~~~~~~ 165 (891)
..++..++..+. ++ ...|-+..+..++.++-+.-++.||.-+..+...+... +| ..-..+...|..+. ..+..
T Consensus 82 ~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls-~~p~e 160 (982)
T KOG2022|consen 82 VQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS-FMPAE 160 (982)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc-cCcHh
Confidence 999999988664 33 34444444555555555555779998887777776542 22 11111222222221 22221
Q ss_pred ccc-CCC----CC----CCcchhhhHHHHHHhhcCC---CH-----HHHHHHHHHHHHHhcccch---hhHHhHHHHHHH
Q 002697 166 LDS-DVP----GL----AECPINIFLPRLLQFFQSP---HT-----SLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQG 225 (891)
Q Consensus 166 ~~~-~~~----~~----~~~~~~~l~~~l~~~l~~~---~~-----~vr~~al~~l~~~~~~~~~---~~~~~~~~~l~~ 225 (891)
+.. +.+ +. +.......++.+-..++.. .+ -.+..+++|+..++.++.. .....+..++..
T Consensus 161 ~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ll~~ 240 (982)
T KOG2022|consen 161 FQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVLLDV 240 (982)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 110 000 00 0001122222233333332 22 3577889999888874321 010000000000
Q ss_pred HH-------------------------------------------------Hh--------------hCCCC--HHHHHH
Q 002697 226 LF-------------------------------------------------LL--------------SNDPS--AEVRKL 240 (891)
Q Consensus 226 l~-------------------------------------------------~~--------------~~~~~--~~v~~~ 240 (891)
+- +. ..+++ ++....
T Consensus 241 l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i~~ 320 (982)
T KOG2022|consen 241 LGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEIVT 320 (982)
T ss_pred HhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 00 00 00111 111111
Q ss_pred HHHHHHHHHhhChhhh---------hHhHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHhhcc---------CC-ch
Q 002697 241 VCAAFNLLIEVRPSFL---------EPHLRNLFEYMLQVNKDT-----DDDVALEACEFWHSYFEA---------QL-PH 296 (891)
Q Consensus 241 ~~~~l~~l~~~~~~~~---------~~~l~~l~~~~~~~~~~~-----~~~v~~~a~~~l~~l~~~---------~~-~~ 296 (891)
.+......+++....+ ..++..++..++.+..-+ ++.+...++.||..+.+. +. ..
T Consensus 321 ~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~~~ 400 (982)
T KOG2022|consen 321 FLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIKKQ 400 (982)
T ss_pred HHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcchh
Confidence 2222222222111111 111223333333332211 355667788999988654 11 22
Q ss_pred hhHHhhhhhhHHHHHhhccCChhhh-hhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHH
Q 002697 297 ENLKEFLPRLVPVLLSNMIYADDDE-SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (891)
Q Consensus 297 ~~~~~~l~~li~~ll~~l~~~~~d~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l 375 (891)
...++...+++..++..+..+.++. ..|.+++ -+. .-.+|+.-.+++
T Consensus 401 i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s------------------------------~e~--F~~YR~diSD~~ 448 (982)
T KOG2022|consen 401 ILSQQIYAQLVEILLKKLALPSKEIWLSWSSDS------------------------------REQ--FESYRKDISDLL 448 (982)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHhccCCcch------------------------------HHH--HHHHHHHHHHHH
Confidence 2333788888899888888765442 2232211 111 124788888888
Q ss_pred HHHHHHcCcchhhhhHHHHHHhhccCC--CcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhh-hcCCCChHHHHH
Q 002697 376 DVLSNVFGDEILPTLMPVIQAKLSASG--DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP-LLDDKFPLIRSI 452 (891)
Q Consensus 376 ~~l~~~~~~~~~~~l~~~l~~~l~~~~--~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~ 452 (891)
...-..+|+..+..+...+.+++.+.+ ...|..-++.+..+..+++..+....+.++.++..... .+.-+++..-..
T Consensus 449 ~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~T 528 (982)
T KOG2022|consen 449 MSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLST 528 (982)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHH
Confidence 888888899888888888988887643 34599999999999999998887777777777765433 234458888889
Q ss_pred HHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHccc
Q 002697 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (891)
Q Consensus 453 a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~ 532 (891)
+...+|.++.|+.+ .+.++...++.+++++..+. .-..+...+..+++.|+..+.||.++++...-..+...
T Consensus 529 ss~~igs~s~~l~e------~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~ 600 (982)
T KOG2022|consen 529 SSDLIGSLSNWLGE------HPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS 600 (982)
T ss_pred HHHHHHHHHHHHhc------CCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc
Confidence 99999999999985 57788999999999997543 34456677999999999999999999999888887643
Q ss_pred --chhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcC-CC--CCcc--h--HhHHHHHHHHHHHhccccccc
Q 002697 533 --QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL-PN--SDKD--L--FPLLECFTSIAQALGAGFTQF 603 (891)
Q Consensus 533 --~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~--~~~~--~--~~~~~~l~~i~~~~~~~~~~~ 603 (891)
+...+..++.+||.+.....++.. |+|+..++.+++..++.. .. +++. + .-.+.|++.+...+-..
T Consensus 601 ~~~~S~~~klm~sIGyvls~~~pEe~-~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~---- 675 (982)
T KOG2022|consen 601 NAKDSDRLKLMKSIGYVLSRLKPEEI-PKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINK---- 675 (982)
T ss_pred ccCchHHHHHHHHHHHHHHhccHHhH-HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCC----
Confidence 445666889999999988775543 689999999998888764 11 1111 0 11233333333322110
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHH--HHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhc--CCChHH
Q 002697 604 AQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVV--CCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM--DDASDV 679 (891)
Q Consensus 604 ~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~--~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v 679 (891)
. ...+++..+.+..... ..+.++.. +++++.+.+. -...++
T Consensus 676 ---------------~---~~~d~d~~~~~~~~~qq~~il~v~~k-----------------~i~~~~kv~s~~~~~s~v 720 (982)
T KOG2022|consen 676 ---------------K---DIIDTDQPEQREEPFQQFPILQVLQK-----------------AIPVFEKVLSMWLGLSDV 720 (982)
T ss_pred ---------------C---ccccccchhhhccccccCCHHHHHHH-----------------HHHHHHHHHHHHhcchhH
Confidence 0 0000000000000000 01111111 2222222211 123455
Q ss_pred HHHHHHHHhHHHHhchHhh-HHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHH---Hhchhh----hhhHHHHHH
Q 002697 680 RQSAFALLGDLARVCPVHL-QARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA---VKARQE----ISPIVMTVV 751 (891)
Q Consensus 680 r~~a~~~l~~l~~~~~~~~-~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~---~~~~~~----~~~~~~~il 751 (891)
-+.++...+.=.+...+.| .|+++.+.+.+.+..... ..+.-.++..+ .....+ +..-+...+
T Consensus 721 ve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~---------~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~ 791 (982)
T KOG2022|consen 721 VEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSC---------LAVTLSLIAACLLAKSTVEQCKPLVGQDMANAF 791 (982)
T ss_pred HHHHHHHHHhccccccccchhhhHHHHHHHHHHhccch---------HHHHHHHHHHHHHhhhccccccccHHHHHHHHH
Confidence 5555554444344444556 788999998888854333 11112222211 111122 222233444
Q ss_pred HHHHHHhcCCh-hhhhhHHHhHHHHHhhhhhhcCCccCc---chhH-HHHHHHhhccCCCCchHHHHHHHHHHHHHhhCh
Q 002697 752 LCLVPILKHSE-ELNKSLIENSAITLGRLAWVCPELVSP---HMEH-FMQPWCIALSMIRDDTEKEDAFRGLCAMVKANP 826 (891)
Q Consensus 752 ~~l~~~l~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~-~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~ 826 (891)
+..+-++.+.. .-+.+..+..+.++..++.+.|+...+ ++.. +++..+..|+..+... .+.+.+-+.+++....
T Consensus 792 q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~-i~aa~qF~t~~~~~~~ 870 (982)
T KOG2022|consen 792 QQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTT-IRAASQFLTALATYAT 870 (982)
T ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHHHhhcc
Confidence 44445555432 114677788888999999999887754 2333 4446667776654443 3355666666655422
Q ss_pred hhhHhhHHHHhh--------Hhhc-cc-ccCchhHHHHHHHHHHHHHhhcCh
Q 002697 827 SGALSSLVFMCR--------AIAS-WH-EIRSEELHNEVCQVLHGYKQMLRN 868 (891)
Q Consensus 827 ~~~~~~l~~~~~--------~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~~ 868 (891)
.........++. ++.. .. ..++ ...+.+.++|.++++.+..
T Consensus 871 s~~~~tv~~~V~~~G~~Li~~im~~vgg~~~R-S~ld~~aDIL~al~~k~~s 921 (982)
T KOG2022|consen 871 SHDLVTVTSVVAEIGPILIYAIMRGVGGEASR-STLDALADILLALNAKFFS 921 (982)
T ss_pred cchhHHHHHHHHhcchHHHHHHHHHhcCcCcc-chhHHHHHHHHHHHHhhhH
Confidence 211222222222 2211 11 1122 2567888999888876653
No 20
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=1e-17 Score=170.16 Aligned_cols=650 Identities=16% Similarity=0.154 Sum_probs=420.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CCCh-HHHHHHHhhccCCCCHHHHHHHHHHHHHhHHh------hhcc
Q 002697 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDF-NNYLAFILARAEGKSVEIRQAAGLLLKNNLRT------AYKS 85 (891)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~--~p~~-~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~------~w~~ 85 (891)
..+..+|....++++. -|+.+...|..-.. .|.+ ...++.++.+- +.+..-|++-.-++-+.+.. .+.+
T Consensus 168 r~v~rllLkvKNG~~~-mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r-~LeDqerhl~vk~idr~Ly~lddl~~pyvh 245 (975)
T COG5181 168 RDVYRLLLKVKNGGKR-MRMEGLRILTDKAVNFGAAAVFNKVLPMLMSR-ELEDQERHLVVKLIDRLLYGLDDLKVPYVH 245 (975)
T ss_pred HhHHHHHhhcccCCch-hhHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-hhhhhhhHhHHHHHHHHHHhccccccccee
Confidence 4577888888888888 99999999865332 3432 34455555433 66778888887777666632 1211
Q ss_pred ----------CChhh------HHHHHHhHhh-hh-----------hcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHH
Q 002697 86 ----------MSPSN------QQYIKSELLP-CL-----------GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALV 137 (891)
Q Consensus 86 ----------~~~~~------~~~i~~~ll~-~L-----------~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~ 137 (891)
+.++. ++.|.+..-. +| .+.++.||+..+.+++.+++.. .-++++|+|.
T Consensus 246 kILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al---gv~~llpfl~ 322 (975)
T COG5181 246 KILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL---GVEELLPFLE 322 (975)
T ss_pred eEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh---CcHHHHHHHH
Confidence 22221 1112221111 22 1357889999999999999876 4588999999
Q ss_pred HHhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhH
Q 002697 138 TCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF 216 (891)
Q Consensus 138 ~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~ 216 (891)
..+.|. ++..|+.++++..+|++..+...-+ ++..++..+-+++.|.+..||..+..+++.+.+...+.-.
T Consensus 323 a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~--------hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygi 394 (975)
T COG5181 323 ALCGSRKSWEARHTGIRIAQQICELLGRSRLS--------HLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGI 394 (975)
T ss_pred HHhcCccchhhhchhhHHHHHHHHHhCccHHh--------hhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcch
Confidence 999887 8999999999999999987654322 3466777888888899999999999999988877665556
Q ss_pred HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh-hChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC-C
Q 002697 217 VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE-VRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-L 294 (891)
Q Consensus 217 ~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~-~ 294 (891)
..++.++..+|..++..........+++.+.++. ..|+....+-.+.+..+.+.++++|++.....+-+...+.... .
T Consensus 395 e~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~ 474 (975)
T COG5181 395 EQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTD 474 (975)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCC
Confidence 6778888888887654433333444555544443 2455555566788888888889888887666666655555441 1
Q ss_pred chhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHH----
Q 002697 295 PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC---- 370 (891)
Q Consensus 295 ~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~---- 370 (891)
.+. .+..++.|.+++. .|.-|.+
T Consensus 475 tp~---~lr~~v~pefF~~--------------------------------------------------fw~rr~A~dr~ 501 (975)
T COG5181 475 TPW---KLRDQVSPEFFSP--------------------------------------------------FWRRRSAGDRR 501 (975)
T ss_pred CHH---HHHHhhcHHhhch--------------------------------------------------HHHhhhccccc
Confidence 111 1223333333210 0111100
Q ss_pred ----HHHHHHHHHHHcCcc-hh------------------hhhHHHHHHhhccCCCcchHHHH------HHHHHHHH---
Q 002697 371 ----SAAALDVLSNVFGDE-IL------------------PTLMPVIQAKLSASGDEAWKDRE------AAVLALGA--- 418 (891)
Q Consensus 371 ----a~~~l~~l~~~~~~~-~~------------------~~l~~~l~~~l~~~~~~~~~~r~------aa~~~l~~--- 418 (891)
...+-..+++..|+. +. ..+...+...+...+ ...|. +-+.++..
T Consensus 502 ~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~---~dErleerl~d~il~Afqeq~~ 578 (975)
T COG5181 502 SYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLG---FDERLEERLYDSILNAFQEQDT 578 (975)
T ss_pred ccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHhccc
Confidence 011112223333321 11 111111222221111 11111 11122210
Q ss_pred -----------HhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHH
Q 002697 419 -----------IAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKR 487 (891)
Q Consensus 419 -----------l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 487 (891)
+.....-..+++++.++..++..|+++.|.||..|+...+.++..+... .....+..+=..+.+.
T Consensus 579 t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c----~e~~~l~klg~iLyE~ 654 (975)
T COG5181 579 TVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKAC----GETKELAKLGNILYEN 654 (975)
T ss_pred cccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhc----chHHHHHHHhHHHHHh
Confidence 0000011236899999999999999999999999999999998877642 1233455555667778
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHh-cccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhH
Q 002697 488 ILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMP 566 (891)
Q Consensus 488 l~d~~~~v~~~a~~al~~l~~~~-~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~ 566 (891)
+....+.|--....|+..+.... -..+.|-+..|+|.|..+|.+...++....+..++.++...++.....++.....
T Consensus 655 lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcf- 733 (975)
T COG5181 655 LGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICF- 733 (975)
T ss_pred cCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHH-
Confidence 88778999888888888887766 3567888999999999999998888888888899999887666543223333222
Q ss_pred HHHHHHHcCCCCCcch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHH
Q 002697 567 PLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLS 645 (891)
Q Consensus 567 ~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~ 645 (891)
-|++.+.+- .+++ .++.+++|.|++++|.. .++..+++-|... |+..|.|..-+++
T Consensus 734 eLvd~Lks~---nKeiRR~A~~tfG~Is~aiGPq------dvL~~LlnnLkvq--------------eRq~RvctsvaI~ 790 (975)
T COG5181 734 ELVDSLKSW---NKEIRRNATETFGCISRAIGPQ------DVLDILLNNLKVQ--------------ERQQRVCTSVAIS 790 (975)
T ss_pred HHHHHHHHh---hHHHHHhhhhhhhhHHhhcCHH------HHHHHHHhcchHH--------------HHHhhhhhhhhhh
Confidence 234444432 3444 67899999999999963 3555555544421 6677777777788
Q ss_pred HHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHh
Q 002697 646 GLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVA 725 (891)
Q Consensus 646 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~ 725 (891)
.+++.+|.- .++|.++.-...++..|.+-.+..+.-+.++.+..-..|+-.+.|.+-..+.+. +..-|
T Consensus 791 iVae~cgpf--------sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr----D~vhR 858 (975)
T COG5181 791 IVAEYCGPF--------SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR----DPVHR 858 (975)
T ss_pred hhHhhcCch--------hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc----chHHH
Confidence 888877752 378888877777888899988899999999999888999999999999999998 67889
Q ss_pred hhHHHHHHHHHHhchhh-hhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHH
Q 002697 726 NNACWAIGELAVKARQE-ISPIVMTVVLCLVPILKHSEELNKSLIENSAITL 776 (891)
Q Consensus 726 ~~a~~alg~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l 776 (891)
+.|...+..++..++.. .....-.++..|++-+-++. +++.+..-.++
T Consensus 859 qta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~s---Phvi~~~~Eg~ 907 (975)
T COG5181 859 QTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPS---PHVIQSFDEGM 907 (975)
T ss_pred HHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCC---cHHHHHHHHHH
Confidence 99999999988776422 11222233444444444442 34444443333
No 21
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.88 E-value=1.3e-16 Score=162.63 Aligned_cols=523 Identities=15% Similarity=0.246 Sum_probs=317.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHH
Q 002697 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (891)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~ 93 (891)
.+-+-++.....-+++. .+++|++-|.+|+..|+.|...-.||.. +..++.+..|...|.+.|.++|+-++.+.|..
T Consensus 13 iallDkVVttfyqg~g~-~q~qAq~iLtkFq~~PdaWtkad~IL~~--S~~pqskyiALs~LdklIttkWkllp~~~r~G 89 (1053)
T COG5101 13 IALLDKVVTTFYQGDGR-KQEQAQRILTKFQELPDAWTKADYILNN--SKLPQSKYIALSLLDKLITTKWKLLPEGMRQG 89 (1053)
T ss_pred HHHHHHHHHHhcCCCch-hHHHHHHHHHHHHhCchHHHHHHHHHhc--ccCcchhhhHHHHHHHHHHhhhhhCCcHHHHH
Confidence 34556667777788888 9999999999999999999999999975 77889999999999999999999999999999
Q ss_pred HHHhHhhhhh--cCChHHHH-------HHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 002697 94 IKSELLPCLG--AADRHIRS-------TVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (891)
Q Consensus 94 i~~~ll~~L~--~~~~~vr~-------~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (891)
||+-+.+.+- +.+..+|. .+-..+..|++.+||..||+++|.|.+.-+ .+..+-+..+.+|..+.++...
T Consensus 90 iRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvFd 168 (1053)
T COG5101 90 IRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVFD 168 (1053)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHHh
Confidence 9999998764 34555544 455667778899999999999999988655 5667778888888877776543
Q ss_pred ccccC--------CCCCCCcchhhhHHHHHHhhcC-CCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCH
Q 002697 165 VLDSD--------VPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSA 235 (891)
Q Consensus 165 ~~~~~--------~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 235 (891)
.-..+ ..+......++++....+.|.- .++..-.+.+..+..+++++|-.+.= .-+++..+..-.. +.+
T Consensus 169 fSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yIf-eTnIieLv~~~f~-s~p 246 (1053)
T COG5101 169 FSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYIF-ETNIIELVLEHFN-SMP 246 (1053)
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHHH-HHHHHHHHHHHhc-cCC
Confidence 21100 0011112235566655666643 47888899999999999998843321 1122333333221 224
Q ss_pred HHHHHHHHHHHHHHhhC--h-------hhhhHh---------------------------------HHHHHHHH------
Q 002697 236 EVRKLVCAAFNLLIEVR--P-------SFLEPH---------------------------------LRNLFEYM------ 267 (891)
Q Consensus 236 ~v~~~~~~~l~~l~~~~--~-------~~~~~~---------------------------------l~~l~~~~------ 267 (891)
+.|...++||..++... | ..+.-+ +..+..++
T Consensus 247 d~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~ 326 (1053)
T COG5101 247 DTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEV 326 (1053)
T ss_pred chhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHH
Confidence 45555566665554321 0 000000 01111100
Q ss_pred -HhhcCC--------------------CCHHHHHHHHHHHHHhhcc--------CC------------------c-----
Q 002697 268 -LQVNKD--------------------TDDDVALEACEFWHSYFEA--------QL------------------P----- 295 (891)
Q Consensus 268 -~~~~~~--------------------~~~~v~~~a~~~l~~l~~~--------~~------------------~----- 295 (891)
+..++. .+.++-..+++.|..++-. |. .
T Consensus 327 ~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~ 406 (1053)
T COG5101 327 YISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDS 406 (1053)
T ss_pred HHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhc
Confidence 011111 1222333445555543211 00 0
Q ss_pred -----hhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHH
Q 002697 296 -----HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC 370 (891)
Q Consensus 296 -----~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~ 370 (891)
+......+.++.-.++..|..+++-.- .++| ..+.+|.+. .|.| ..+.-+.
T Consensus 407 ~~pLrkhiY~~ilsqLrlvlienMvrPEEVli-Vend-------egEivRefv-------------ketD---tI~lYks 462 (1053)
T COG5101 407 TKPLRKHIYIGILSQLRLVLIENMVRPEEVLI-VEND-------EGEIVREFV-------------KETD---TIELYKS 462 (1053)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCcceEEE-EECC-------CcHHHHHHh-------------cccc---HhHHHHH
Confidence 000111223333333444443321100 0000 000111000 0111 1123344
Q ss_pred HHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhh-hhHHHHHHHHh-----hhcCC
Q 002697 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLI-----PLLDD 444 (891)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~-~~l~~i~~~l~-----~~l~d 444 (891)
-..+|-.++...-.+.-..++.-+-..+.+. +.+|..-..-++++|+++....+... .++-.++..++ +.-+|
T Consensus 463 mRevLvyLthL~v~Dte~~mi~Klarq~dg~-EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKd 541 (1053)
T COG5101 463 MREVLVYLTHLIVDDTEKYMIGKLARQLDGK-EWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKD 541 (1053)
T ss_pred HhhHHHHHhhhhhhhHHHHHHHHHHHHhcCC-ccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4455555555443333334444444444443 34477788888999999877665443 44444444443 34567
Q ss_pred CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc--------cchH
Q 002697 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE--------ELAP 516 (891)
Q Consensus 445 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~--------~~~~ 516 (891)
....|....+..+|++-..+.. ...++..++..+++.+...+..|+..||..+-.+++.|+- .-.|
T Consensus 542 nKAVvASnIMyvvGQYpRFLka------hw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEp 615 (1053)
T COG5101 542 NKAVVASNIMYVVGQYPRFLKA------HWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEP 615 (1053)
T ss_pred cchhhecceeeeeccchHHHHH------HHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCc
Confidence 7788888889999999988864 5788999999999999988899999999999999999853 2467
Q ss_pred hHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHH
Q 002697 517 RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQ 573 (891)
Q Consensus 517 ~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~ 573 (891)
|+..|+..+-+.-.+-........++|.+.+++..+..-.....+-.+|......|.
T Consensus 616 FI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~ 672 (1053)
T COG5101 616 FIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWL 672 (1053)
T ss_pred HHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHH
Confidence 888887777666655555566678999999888766542211333344444444443
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.88 E-value=4.8e-17 Score=194.14 Aligned_cols=761 Identities=13% Similarity=0.113 Sum_probs=455.9
Q ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhc-C----------CChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHH
Q 002697 14 FNEICRLLEQQISP--SSTADKSQIWQQLQQYSQ-F----------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR 80 (891)
Q Consensus 14 ~~~l~~~l~~~~s~--d~~~~r~~a~~~L~~~~~-~----------p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~ 80 (891)
..++..+++.+.++ +.+ .|++|...|..+.+ + .++++.|..+|.+ .+..+|..|+..|.+.-.
T Consensus 12 ~~~v~~Lve~L~s~~ss~~-~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s---g~~~vk~nAaaaL~nLS~ 87 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQ-EKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS---GTLGAKVNAAAVLGVLCK 87 (2102)
T ss_pred HHHHHHHHHHHHcccCCHH-HHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC---CCHHHHHHHHHHHHHHhc
Confidence 34677777777755 556 88888888887653 2 4577888888863 468888888766655422
Q ss_pred hhhccCChhhH-----HHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcc-cCch------HHHHHHHHHHhccCC---h
Q 002697 81 TAYKSMSPSNQ-----QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG-IAGW------LELLQALVTCLDSND---I 145 (891)
Q Consensus 81 ~~w~~~~~~~~-----~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~-~~~w------~~ll~~L~~~l~~~~---~ 145 (891)
+ ++.+ ......|+..|.+.+...|..++.++..++.... ...| +..+|.|...+++++ .
T Consensus 88 ~------e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~ 161 (2102)
T PLN03200 88 E------EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDK 161 (2102)
T ss_pred C------HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhH
Confidence 1 2222 2233457788888889999999999999987532 2223 455788888888764 2
Q ss_pred hHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhH-HHHHH
Q 002697 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQ 224 (891)
Q Consensus 146 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~ 224 (891)
.++..+..+|..++..-...... . .-...+|.++.+++++++.++..|+.++..++...++....-+ ...++
T Consensus 162 ~L~~~Av~AL~nLs~~~en~~~~-I------IeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP 234 (2102)
T PLN03200 162 VVEGLLTGALRNLCGSTDGFWSA-T------LEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVK 234 (2102)
T ss_pred HHHHHHHHHHHHHhcCccchHHH-H------HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 34556677888887644321100 0 0134689999999999999999999988887765443221111 13478
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHHHhhChhhhhHhHH-HHHHHHHhhcCCC---------CHHHHHHHHHHHHHhhccC
Q 002697 225 GLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDT---------DDDVALEACEFWHSYFEAQ 293 (891)
Q Consensus 225 ~l~~~~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~---------~~~v~~~a~~~l~~l~~~~ 293 (891)
.+..++.+ ++..+|..+..+|..++...++.-....+ ..++.+++.+..+ ....+..|...+..++..
T Consensus 235 ~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg- 313 (2102)
T PLN03200 235 QLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG- 313 (2102)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC-
Confidence 88888864 45689999999999998765443221111 2233333333322 244678888889888865
Q ss_pred CchhhHHhhhhhhHHHHHhhccCChhhhh------------hhhhc-ccCCCCCCCCCCCcccc-cccCCCCCCCCCCCc
Q 002697 294 LPHENLKEFLPRLVPVLLSNMIYADDDES------------LVEAE-EDESLPDRDQDLKPRFH-SSRLHGSENPEDDDD 359 (891)
Q Consensus 294 ~~~~~~~~~l~~li~~ll~~l~~~~~d~~------------~~~~~-~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~d~ 359 (891)
.. .+-+++.+++ .. ..|.. .+..+ +++. ..-+.|.-. ..-. .=....+
T Consensus 314 -~~-~ll~~L~~ll-------~s-~rd~~~~ada~gALayll~l~d~~~~~----~~~i~~~~v~~~LV---~Llr~k~- 375 (2102)
T PLN03200 314 -MS-ALILYLGELS-------ES-PRSPAPIADTLGALAYALMVFDSSAES----TRAFDPTVIEQILV---KLLKPRD- 375 (2102)
T ss_pred -ch-hhHHHHHHhh-------cc-cchHHHHHHHHhhHHHHHHhcCCchhh----hhhccccccHHHHH---HHhCCCC-
Confidence 11 1112222211 10 00000 00000 0000 000000000 0000 0000000
Q ss_pred cccccccHHHHHHHHHHHHHHHcCcchh------hhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHH
Q 002697 360 DIVNVWNLRKCSAAALDVLSNVFGDEIL------PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE 433 (891)
Q Consensus 360 d~~~~~~~r~~a~~~l~~l~~~~~~~~~------~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~ 433 (891)
+. -+.. .....|+..+|...+ ....+.+..++...+ ...+..++.++..++.+..+........
T Consensus 376 -p~---~vqe---~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~---~evQ~~Av~aL~~L~~~~~e~~~aIi~~ 445 (2102)
T PLN03200 376 -TK---LVQE---RIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT---ADVQEELIRALSSLCCGKGGLWEALGGR 445 (2102)
T ss_pred -Cc---hhHH---HHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC---HHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 00 0011 112222222222111 122344555666666 7899999999999997755443322222
Q ss_pred -HHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 002697 434 -IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (891)
Q Consensus 434 -i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (891)
.+|.++..|.++++.++..|+|+++.++..-... ...-.-...++.+++.|..++..+|+.|+++|.+++.. .+
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nden----r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~ 520 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDES----KWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SE 520 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH----HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cH
Confidence 6889999999999999999999999998633211 01111245788999999988999999999999999863 22
Q ss_pred cchHhH--HHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcch-HhHHHHH
Q 002697 513 ELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECF 589 (891)
Q Consensus 513 ~~~~~l--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l 589 (891)
.....+ ...++.|+++|++.+.+.+..+..+|..++..... . .++.+...+.. +++.. ..+++.+
T Consensus 521 qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-----~----~I~~Lv~LLls---dd~~~~~~aL~vL 588 (2102)
T PLN03200 521 DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-----A----TISQLTALLLG---DLPESKVHVLDVL 588 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----h----HHHHHHHHhcC---CChhHHHHHHHHH
Confidence 333333 24677888999888888888999999998764322 1 22455555544 23333 5667777
Q ss_pred HHHHHHhcc-ccccc---hHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHH
Q 002697 590 TSIAQALGA-GFTQF---AQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLR 665 (891)
Q Consensus 590 ~~i~~~~~~-~~~~~---~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~ 665 (891)
+.+...... ++..- ....++.+.+++++. +......+..++..+...-.+.....+.. ..+
T Consensus 589 gnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg--------------s~~ikk~Aa~iLsnL~a~~~d~~~avv~a-gaI 653 (2102)
T PLN03200 589 GHVLSVASLEDLVREGSAANDALRTLIQLLSSS--------------KEETQEKAASVLADIFSSRQDLCESLATD-EII 653 (2102)
T ss_pred HHHHhhcchhHHHHHhhhccccHHHHHHHHcCC--------------CHHHHHHHHHHHHHHhcCChHHHHHHHHc-CCH
Confidence 776553322 11100 012345555555531 44556666677777766444433333333 355
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhHHHHhchHh-hHHhHH-HHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhh
Q 002697 666 DMLLQCCMDDASDVRQSAFALLGDLARVCPVH-LQARLS-DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI 743 (891)
Q Consensus 666 ~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~-~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~ 743 (891)
+.+...+++.+.+++..+..+|+.+....... ...++. ..+|.+.+.+... +..+++.|+.+|+.++.......
T Consensus 654 pPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~----d~~v~e~Al~ALanLl~~~e~~~ 729 (2102)
T PLN03200 654 NPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS----SIEVAEQAVCALANLLSDPEVAA 729 (2102)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC----ChHHHHHHHHHHHHHHcCchHHH
Confidence 66667778888899999999999999754433 223333 4788899999887 67999999999999997764321
Q ss_pred hhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCc--cCcch--hHHHHHHHhhccCCCCchHHH--HHHHH
Q 002697 744 SPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPEL--VSPHM--EHFMQPWCIALSMIRDDTEKE--DAFRG 817 (891)
Q Consensus 744 ~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~--~~~l~~~~~~l~~~~~~~e~~--~~~~~ 817 (891)
.-.-...++.|..++.++. ...+++|+.++..+...++.. +..+. ...+..+++.|... |.+... .+..+
T Consensus 730 ei~~~~~I~~Lv~lLr~G~---~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~-~~~~~~~~~al~~ 805 (2102)
T PLN03200 730 EALAEDIILPLTRVLREGT---LEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST-DLDSSATSEALEA 805 (2102)
T ss_pred HHHhcCcHHHHHHHHHhCC---hHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC-CcchhhHHHHHHH
Confidence 1112455788888888874 688999999999999877632 11122 22456666666653 333333 47788
Q ss_pred HHHHHhhC--------hhhhH----hhHHHHhhHhhcccccCchhHHHHHHHHHHHHHh
Q 002697 818 LCAMVKAN--------PSGAL----SSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQ 864 (891)
Q Consensus 818 l~~l~~~~--------~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 864 (891)
+..+.+.. |-.+. ..+..+++++.. ..+.+.+..-+++..+-+
T Consensus 806 l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~----~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 806 LALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAE----GHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHc----CChHHHHHHHHHHHHHhc
Confidence 87777751 11122 457777777733 233566776666666544
No 23
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.2e-15 Score=158.54 Aligned_cols=646 Identities=16% Similarity=0.173 Sum_probs=407.2
Q ss_pred CChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHH
Q 002697 105 ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (891)
Q Consensus 105 ~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 184 (891)
++...|..--++|+++++.. .....+..+..-+.+.++.+|....++++.++..++ ++.++|.
T Consensus 453 ed~yar~egreIisnLakaa---Gla~mistmrpDidn~deYVRnttarafavvasalg--------------ip~llpf 515 (1172)
T KOG0213|consen 453 EDYYARVEGREIISNLAKAA---GLATMISTMRPDIDNKDEYVRNTTARAFAVVASALG--------------IPALLPF 515 (1172)
T ss_pred chHHHhhchHHHHHHHHHHh---hhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC--------------cHHHHHH
Confidence 34444444445555555543 223333334334455677889888888888777544 2678888
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHH
Q 002697 185 LLQFFQSP-HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (891)
Q Consensus 185 l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l 263 (891)
+-..+.+. +.+-|+.++++...+...++-...+++..++..+-..+.|.+..+|.....++..+++.....=...++.+
T Consensus 516 Lkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsV 595 (1172)
T KOG0213|consen 516 LKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSV 595 (1172)
T ss_pred HHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHH
Confidence 88888776 88999999999999998888788899999999999999998899999999999999987766555667888
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhh-hhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcc
Q 002697 264 FEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF-LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPR 342 (891)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~ 342 (891)
+..++..........-..-+..+..++-. .......| ...++-.++.-....
T Consensus 596 lkpLwkgir~hrgk~laafLkAigylipl--md~eya~yyTrevmlil~rEf~sP------------------------- 648 (1172)
T KOG0213|consen 596 LKPLWKGIRQHRGKELAAFLKAIGYLIPL--MDAEYASYYTREVMLILIREFGSP------------------------- 648 (1172)
T ss_pred HHHHHHHHHHccChHHHHHHHHHhhcccc--ccHHHHHHhHHHHHHHHHHhhCCC-------------------------
Confidence 88888765533222111112222222211 11111112 222333332211111
Q ss_pred cccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCc---chhhhhHHHHHHhhccCCCcchHHHHHH-------
Q 002697 343 FHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAA------- 412 (891)
Q Consensus 343 ~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aa------- 412 (891)
|+ ..++.....+..++..-|. ..-..++|.+...+ |..|-|.
T Consensus 649 ---------------De------emkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~f-------w~rrmA~drr~ykq 700 (1172)
T KOG0213|consen 649 ---------------DE------EMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSF-------WGRRMALDRRNYKQ 700 (1172)
T ss_pred ---------------hH------HHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhh-------hhhhhhccccchhh
Confidence 11 1567777888887777664 22233444333222 4443332
Q ss_pred -HHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCC
Q 002697 413 -VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (891)
Q Consensus 413 -~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~ 491 (891)
...-..++... --..++..++.-+.|..+.-|...+.++.++...++.. ......-+.++..++-.++..
T Consensus 701 lv~ttv~ia~Kv------G~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~---diderleE~lidgil~Afqeq 771 (1172)
T KOG0213|consen 701 LVDTTVEIAAKV------GSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAA---DIDERLEERLIDGILYAFQEQ 771 (1172)
T ss_pred HHHHHHHHHHHh------CchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccc---cccHHHHHHHHHHHHHHHHhc
Confidence 00111222211 11346777888889999999999999999888776532 223444566777777777654
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHH
Q 002697 492 NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (891)
Q Consensus 492 ~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~ 571 (891)
...+. -....++.++...+..++||+++|+..++..|++....++..+.+.++.++..+...- .+.+|..+-..
T Consensus 772 tt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~-----ee~~m~~lGvv 845 (1172)
T KOG0213|consen 772 TTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCG-----EEKLMGHLGVV 845 (1172)
T ss_pred ccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhcc-----HHHHHHHhhHH
Confidence 33222 2355677888888889999999999999999999999999999999999988765431 22344444443
Q ss_pred HH-cCCCCCcch-HhHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHH
Q 002697 572 WQ-QLPNSDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLA 648 (891)
Q Consensus 572 l~-~~~~~~~~~-~~~~~~l~~i~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~ 648 (891)
+. ..+.+.+++ ..++.++-.|...+|. .+.|-+..++|++..+|.+.. ..+.+.++++++.++
T Consensus 846 LyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrh--------------eKVqen~IdLvg~Ia 911 (1172)
T KOG0213|consen 846 LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH--------------EKVQENCIDLVGTIA 911 (1172)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhH--------------HHHHHHHHHHHHHHH
Confidence 33 333455665 7888899999999887 688888999999999998653 245566778888877
Q ss_pred HHHhhhHHhhhccchHHHHHH---HHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHh
Q 002697 649 EGLGSGIESLVAQSNLRDMLL---QCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVA 725 (891)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~ 725 (891)
..-.+ |++.-..+.+.. ..++...-++|.+|...+|-|++..|.+ +++..|+..|+.. .-.-|
T Consensus 912 drgpE----~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------dVLatLlnnLkvq----eRq~R 977 (1172)
T KOG0213|consen 912 DRGPE----YVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------DVLATLLNNLKVQ----ERQNR 977 (1172)
T ss_pred hcCcc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------HHHHHHHhcchHH----HHHhc
Confidence 65322 333222344333 2334456789999999999999988743 4566667666654 22334
Q ss_pred hhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccCC
Q 002697 726 NNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMI 805 (891)
Q Consensus 726 ~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~ 805 (891)
.....+++.++..++ || .+++.|+.=...+. -.+.+.+..+++.+..+-.+.-..|+-.+.|.+-++|-+
T Consensus 978 vcTtvaIaIVaE~c~----pF--tVLPalmneYrtPe---~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmD- 1047 (1172)
T KOG0213|consen 978 VCTTVAIAIVAETCG----PF--TVLPALMNEYRTPE---ANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMD- 1047 (1172)
T ss_pred hhhhhhhhhhhhhcC----ch--hhhHHHHhhccCch---hHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcc-
Confidence 444455655555544 22 23545555444443 455666777777777665554456778888888888876
Q ss_pred CCchHHHHHHHHHHHHHhhChhhh--HhhHHHHhhHhhcccc--cCchhHHHHHHHHHHHHHhhcChhhH-HHHHhcC
Q 002697 806 RDDTEKEDAFRGLCAMVKANPSGA--LSSLVFMCRAIASWHE--IRSEELHNEVCQVLHGYKQMLRNGAW-DQCMSAL 878 (891)
Q Consensus 806 ~~~~e~~~~~~~l~~l~~~~~~~~--~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~ 878 (891)
.|..-|..+...+-.+.-. +... ...+..+++.+ |-+ .+.+++...+..-+.++..++|+..+ +.+++.|
T Consensus 1048 rD~vhRqta~~~I~Hl~Lg-~~g~g~eda~iHLLN~i--WpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGL 1122 (1172)
T KOG0213|consen 1048 RDLVHRQTAMNVIKHLALG-VPGTGCEDALIHLLNLI--WPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGL 1122 (1172)
T ss_pred ccHHHHHHHHHHHHHHhcC-CCCcCcHHHHHHHHHHh--hhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhc
Confidence 5555676766666665443 3322 12233333322 111 14567888899999999999987443 5555554
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=2.8e-17 Score=196.12 Aligned_cols=708 Identities=15% Similarity=0.108 Sum_probs=432.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-------------CChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHh
Q 002697 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQF-------------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT 81 (891)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~-------------p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~ 81 (891)
.-+.++|+ +.+.+ .|+.|-..|..+... ++.++.|..++.+....+..++..|...|+|.-..
T Consensus 102 ppLV~LL~---sGs~e-aKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~ 177 (2102)
T PLN03200 102 PPLLSLLK---SGSAE-AQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGS 177 (2102)
T ss_pred HHHHHHHH---CCCHH-HHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcC
Confidence 34455553 45566 889998888776432 56678899998753223445677777777776543
Q ss_pred hhccCChh-hHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhccc--Cch--HHHHHHHHHHhccC-ChhHHhHHHHHH
Q 002697 82 AYKSMSPS-NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGW--LELLQALVTCLDSN-DINHMEGAMDAL 155 (891)
Q Consensus 82 ~w~~~~~~-~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~--~~w--~~ll~~L~~~l~~~-~~~~r~~al~~L 155 (891)
. ...... ........++..|.++++.++..++.++..++..... ... ...+|.|.++++++ ++.+|+.|..+|
T Consensus 178 ~-en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL 256 (2102)
T PLN03200 178 T-DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGAL 256 (2102)
T ss_pred c-cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHH
Confidence 2 111111 1233456788888888999999999988888765321 111 23478888888764 568999999999
Q ss_pred HHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCC---------HHHHHHHHHHHHHHhcccchhhHHhHHHHHHHH
Q 002697 156 SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH---------TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGL 226 (891)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~---------~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l 226 (891)
..++....+.-. .+. -..-+|.|++.+..++ ...+..|+.+|.++.... ..+++.+
T Consensus 257 ~nLAs~s~e~r~-~Iv------~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~--------~~ll~~L 321 (2102)
T PLN03200 257 EALSSQSKEAKQ-AIA------DAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM--------SALILYL 321 (2102)
T ss_pred HHHhcCCHHHHH-HHH------HCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc--------hhhHHHH
Confidence 999975433211 000 0234778888887654 346899999999988653 2334555
Q ss_pred HHhhCCC-CHHHHHHHHHHHHHHHh---hChhhhhHhH--HHHHHHHHhhcCCCCHHH-HHHHHHHHHHhhccCCchhhH
Q 002697 227 FLLSNDP-SAEVRKLVCAAFNLLIE---VRPSFLEPHL--RNLFEYMLQVNKDTDDDV-ALEACEFWHSYFEAQLPHENL 299 (891)
Q Consensus 227 ~~~~~~~-~~~v~~~~~~~l~~l~~---~~~~~~~~~l--~~l~~~~~~~~~~~~~~v-~~~a~~~l~~l~~~~~~~~~~ 299 (891)
-..+.+. +......++.++..+.. ...+... .+ ..+.+.+.+.+.+.++.. ...+.+.+..+..++.....+
T Consensus 322 ~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~-~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L 400 (2102)
T PLN03200 322 GELSESPRSPAPIADTLGALAYALMVFDSSAESTR-AFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKL 400 (2102)
T ss_pred HHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhh-hccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH
Confidence 5544433 33334445555544432 2211111 11 134456666777665543 455566665544432122222
Q ss_pred HhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH
Q 002697 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (891)
Q Consensus 300 ~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~ 379 (891)
.. .+.++.++..+..... .++..+..+|..++
T Consensus 401 ~~--~daik~LV~LL~~~~~----------------------------------------------evQ~~Av~aL~~L~ 432 (2102)
T PLN03200 401 NH--AEAKKVLVGLITMATA----------------------------------------------DVQEELIRALSSLC 432 (2102)
T ss_pred Hh--ccchhhhhhhhccCCH----------------------------------------------HHHHHHHHHHHHHh
Confidence 11 2233444443432211 15677888887777
Q ss_pred HHcCc---ch-hhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhcCCCChHHHHHHH
Q 002697 380 NVFGD---EI-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISC 454 (891)
Q Consensus 380 ~~~~~---~~-~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~ 454 (891)
..-.+ .+ -...+|.+.+++.+++ ...|+.|+.+++.++.+..+.-.... ...+|.+++.|.++++.+|..|+
T Consensus 433 ~~~~e~~~aIi~~ggIp~LV~LL~s~s---~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAa 509 (2102)
T PLN03200 433 CGKGGLWEALGGREGVQLLISLLGLSS---EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSA 509 (2102)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 54322 11 1235778888888877 88999999999999876654322222 24789999999999999999999
Q ss_pred HHHHhhHHHHhhhhCCCcchhhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHccc
Q 002697 455 WTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (891)
Q Consensus 455 ~~l~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~ 532 (891)
|++++++.+-.+ ....+ ..+++.+++.|.+.+.++|..|+++|.+++...... .++.++..+...
T Consensus 510 wAL~NLa~~~~q------ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsd 576 (2102)
T PLN03200 510 TVLWNLCCHSED------IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-------TISQLTALLLGD 576 (2102)
T ss_pred HHHHHHhCCcHH------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-------HHHHHHHHhcCC
Confidence 999999874221 22223 257888999999989999999999999998764332 234456667776
Q ss_pred chhHHHHHHHHHHHHHHHhcccCCchh--hhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccc-cchHHHHH
Q 002697 533 QRRNLRIVYDAIGTLADAVGFELNQPV--YLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFT-QFAQPVFQ 609 (891)
Q Consensus 533 ~~~~~~~~~~al~~l~~~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-~~~~~i~~ 609 (891)
+...+..++++++.+............ --..-+|.|.+.+++.. +.....+..+++.++..-..... -.....++
T Consensus 577 d~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs--~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIp 654 (2102)
T PLN03200 577 LPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK--EETQEKAASVLADIFSSRQDLCESLATDEIIN 654 (2102)
T ss_pred ChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHH
Confidence 667777788888888764433210000 01246677777777642 22225666777776642211100 01112355
Q ss_pred HHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhh-HHhhhccchHHHHHHHHhcCCChHHHHHHHHHHh
Q 002697 610 RCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSG-IESLVAQSNLRDMLLQCCMDDASDVRQSAFALLG 688 (891)
Q Consensus 610 ~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~ 688 (891)
.++..+... +.+.+..+..+++.+....... ...++.. ..++.|...+++.+.++++.|..+|+
T Consensus 655 PLV~LLss~--------------~~~v~keAA~AL~nL~~~~~~~q~~~~v~~-GaV~pL~~LL~~~d~~v~e~Al~ALa 719 (2102)
T PLN03200 655 PCIKLLTNN--------------TEAVATQSARALAALSRSIKENRKVSYAAE-DAIKPLIKLAKSSSIEVAEQAVCALA 719 (2102)
T ss_pred HHHHHHhcC--------------ChHHHHHHHHHHHHHHhCCCHHHHHHHHHc-CCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 566666532 3345555666777777632222 1223333 46666778888889999999999999
Q ss_pred HHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhch-hh-hhhHH--HHHHHHHHHHhcCChhh
Q 002697 689 DLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QE-ISPIV--MTVVLCLVPILKHSEEL 764 (891)
Q Consensus 689 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-~~-~~~~~--~~il~~l~~~l~~~~~~ 764 (891)
.++........---...++.+.+.+++. +...|++|+|+|..++.+.+ ++ +..|+ ...+..|..+|+..+.
T Consensus 720 nLl~~~e~~~ei~~~~~I~~Lv~lLr~G----~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~- 794 (2102)
T PLN03200 720 NLLSDPEVAAEALAEDIILPLTRVLREG----TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDL- 794 (2102)
T ss_pred HHHcCchHHHHHHhcCcHHHHHHHHHhC----ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCc-
Confidence 9998764322111245678888888887 77999999999999998765 22 32332 3355667777876641
Q ss_pred hhhHHHhHHHHHhhhhhh-cCCcc-Ccch------hHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChhhhH
Q 002697 765 NKSLIENSAITLGRLAWV-CPELV-SPHM------EHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGAL 830 (891)
Q Consensus 765 ~~~~~~~~~~~l~~l~~~-~~~~~-~~~~------~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~ 830 (891)
.....-.+..+++.+.+. ..... .|.+ +.-+..++.++.. +...-...+++.+.++++.+|..+-
T Consensus 795 ~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~-~~p~~~~kai~il~~~~~~~~~~~~ 867 (2102)
T PLN03200 795 DSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAE-GHPLVQDKAIEILSRLCRDQPVVLG 867 (2102)
T ss_pred chhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHc-CChHHHHHHHHHHHHHhccChhHHH
Confidence 222222367777777763 11111 1222 2335566666633 5556677889999999998886544
No 25
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=6e-16 Score=173.52 Aligned_cols=524 Identities=16% Similarity=0.161 Sum_probs=326.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhh--hhHhHHHHHHHHHhhcCCCCHHHHHHH---HHHHHHhhccCCchh
Q 002697 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF--LEPHLRNLFEYMLQVNKDTDDDVALEA---CEFWHSYFEAQLPHE 297 (891)
Q Consensus 223 l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~--~~~~l~~l~~~~~~~~~~~~~~v~~~a---~~~l~~l~~~~~~~~ 297 (891)
...+.....++++..|++.|-.|..++...... ..-+..+|.......+.+.|+-++..| +..++.+...+..
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k-- 897 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK-- 897 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH--
Confidence 455556667788999999988888777655422 233455666666667777665444433 4444444443211
Q ss_pred hHHhhhhhhHHHHHhh---ccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHH
Q 002697 298 NLKEFLPRLVPVLLSN---MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAA 374 (891)
Q Consensus 298 ~~~~~l~~li~~ll~~---l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~ 374 (891)
+..+..++..+... -....+|-+.++. .... .- -|. . .-...+-
T Consensus 898 --~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~-------------------G~Lg----~T-p~G-----g--~isTYKE 944 (1702)
T KOG0915|consen 898 --KSLVDSLVNTLTGGKRKAIKVSEETELFQE-------------------GTLG----KT-PDG-----G--KISTYKE 944 (1702)
T ss_pred --HHHHHHHHHHHhccccccceeccchhcccC-------------------CcCC----CC-CCC-----C--cchHHHH
Confidence 12233333333210 0000112222211 0000 00 000 0 1223445
Q ss_pred HHHHHHHcCcchhhhhHHHHHHhhc-cCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHH
Q 002697 375 LDVLSNVFGDEILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSIS 453 (891)
Q Consensus 375 l~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 453 (891)
|-.++.-+|+. .++--+.+.-+ +.. |..|.+|++.+|.++....+.+.||+++++|.+...=-||++.|+.+-
T Consensus 945 Lc~LASdl~qP---dLVYKFM~LAnh~A~---wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM 1018 (1702)
T KOG0915|consen 945 LCNLASDLGQP---DLVYKFMQLANHNAT---WNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAM 1018 (1702)
T ss_pred HHHHHhhcCCh---HHHHHHHHHhhhhch---hhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHH
Confidence 55667777652 22222222233 345 999999999999999999999999999999999999999999999886
Q ss_pred HHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-cccchHhHHHHHHHHHHHHccc
Q 002697 454 CWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKY 532 (891)
Q Consensus 454 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~-~~~~~~~l~~il~~l~~~l~~~ 532 (891)
...-+.+...-.. ....|+.+++..|+..+.+...+||+++|.||..++..- .+.+...++.+...+++.+++.
T Consensus 1019 ~sIW~~Li~D~k~-----~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI 1093 (1702)
T KOG0915|consen 1019 TSIWNALITDSKK-----VVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI 1093 (1702)
T ss_pred HHHHHHhccChHH-----HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555443222 367899999999999999999999999999999999864 3457788999999999999999
Q ss_pred chhHHHHH---HHHHHHHHHHhcccCC---chhhhhhhhHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHhccccccchH
Q 002697 533 QRRNLRIV---YDAIGTLADAVGFELN---QPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQ 605 (891)
Q Consensus 533 ~~~~~~~~---~~al~~l~~~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~ 605 (891)
++.++..+ ..+++.++-.+++... ....++.++|.++..=.- + .-+++ .-.+.++..+++..|....||++
T Consensus 1094 KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s-~v~evr~~si~tl~dl~Kssg~~lkP~~~ 1171 (1702)
T KOG0915|consen 1094 KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-S-KVNEVRRFSIGTLMDLAKSSGKELKPHFP 1171 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-c-chHHHHHHHHHHHHHHHHhchhhhcchhh
Confidence 88888754 5667766655443321 126778888877652111 1 12233 46788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccCCCCchhHHH-HHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHH
Q 002697 606 PVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVV-CCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAF 684 (891)
Q Consensus 606 ~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~ 684 (891)
++++.+++.+... ++.... .++.+ .+.+.+ .+.-+-......+ --+
T Consensus 1172 ~LIp~ll~~~s~l--------------E~~vLnYls~r~-------~~~e~e-------alDt~R~s~akss-----pmm 1218 (1702)
T KOG0915|consen 1172 KLIPLLLNAYSEL--------------EPQVLNYLSLRL-------INIETE-------ALDTLRASAAKSS-----PMM 1218 (1702)
T ss_pred HHHHHHHHHcccc--------------chHHHHHHHHhh-------hhhHHH-------HHHHHHHhhhcCC-----cHH
Confidence 9999988765531 111110 01111 000000 0000000000001 124
Q ss_pred HHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhh
Q 002697 685 ALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEEL 764 (891)
Q Consensus 685 ~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 764 (891)
.+++.++++... ..+.+++|.+.+.++.+- +...|..++..+..++...+.++.||...++..+++.+.+.+
T Consensus 1219 eTi~~ci~~iD~---~vLeelip~l~el~R~sV---gl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRN-- 1290 (1702)
T KOG0915|consen 1219 ETINKCINYIDI---SVLEELIPRLTELVRGSV---GLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRN-- 1290 (1702)
T ss_pred HHHHHHHHhhhH---HHHHHHHHHHHHHHhccC---CCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccccc--
Confidence 445555555432 345677788887777653 667899999999999999999999999999999999999863
Q ss_pred hhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChhhhHhhHHHHhhHh
Q 002697 765 NKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAI 840 (891)
Q Consensus 765 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~ 840 (891)
..++...+.+.|.+.....+. ....++..+...+-. +++..+..++..+.++....+..+..+-..|+..+
T Consensus 1291 -esv~kafAsAmG~L~k~Ss~d---q~qKLie~~l~~~l~-k~es~~siscatis~Ian~s~e~Lkn~asaILPLi 1361 (1702)
T KOG0915|consen 1291 -ESVRKAFASAMGYLAKFSSPD---QMQKLIETLLADLLG-KDESLKSISCATISNIANYSQEMLKNYASAILPLI 1361 (1702)
T ss_pred -HHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHhc-cCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHH
Confidence 788888899999999875432 133344444333322 22233466677777633333333445555555544
No 26
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=9.3e-16 Score=172.01 Aligned_cols=497 Identities=17% Similarity=0.224 Sum_probs=330.9
Q ss_pred ChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcc-----cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhh
Q 002697 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG-----IAGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (891)
Q Consensus 87 ~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~-----~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~ 161 (891)
+...-..+.+.+...+.++++..|++.+.-+-.+.++.+ .-..+++.......+.+.|.-.+..|.+-++.+.+-
T Consensus 812 n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYel 891 (1702)
T KOG0915|consen 812 NDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYEL 891 (1702)
T ss_pred CCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEec
Confidence 344456777778888889999999999988887777753 235678888888889888887888787777654442
Q ss_pred chhccccCCCCCCCcchhhhHHHHHHhhcCCC---------HHH-------------HHHHHHHHHHHhcccchhhHHhH
Q 002697 162 IPQVLDSDVPGLAECPINIFLPRLLQFFQSPH---------TSL-------------RKLSLGSVNQFIMLMPSALFVSM 219 (891)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~---------~~v-------------r~~al~~l~~~~~~~~~~~~~~~ 219 (891)
.... .-..++..+++.|..+. .++ .....+=|.+++..+++
T Consensus 892 gd~~-----------~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q------ 954 (1702)
T KOG0915|consen 892 GDSS-----------LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ------ 954 (1702)
T ss_pred CCch-----------hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC------
Confidence 2221 12344555555543311 000 11222222222222111
Q ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhh
Q 002697 220 DQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHEN 298 (891)
Q Consensus 220 ~~~l~~l~~~~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~ 298 (891)
|.++-.+.+++++ ..+.-|+.+.-.|..+++...+.+.||++.++|.+.+.--|++..|+..-...|.+++.. ....
T Consensus 955 PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D--~k~~ 1032 (1702)
T KOG0915|consen 955 PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITD--SKKV 1032 (1702)
T ss_pred hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccC--hHHH
Confidence 2234444455543 245677888889999999999999999999999999998999999998888999888654 3333
Q ss_pred HHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 002697 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (891)
Q Consensus 299 ~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l 378 (891)
+..|+.+|
T Consensus 1033 vd~y~neI------------------------------------------------------------------------ 1040 (1702)
T KOG0915|consen 1033 VDEYLNEI------------------------------------------------------------------------ 1040 (1702)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 33333332
Q ss_pred HHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHH
Q 002697 379 SNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (891)
Q Consensus 379 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 457 (891)
+.-+...+.+.. |++|++++.++..+..+-+ +.+...+++++..++....|-...||.+|-.+.
T Consensus 1041 ------------l~eLL~~lt~ke---wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~ 1105 (1702)
T KOG0915|consen 1041 ------------LDELLVNLTSKE---WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAA 1105 (1702)
T ss_pred ------------HHHHHHhccchh---HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333445566 9999999999999998765 456788999999999999999999999965555
Q ss_pred HhhHHHHhhhh---CCCcchhhHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccc
Q 002697 458 SRFSKFIVQDI---GHQNGREQFEKVLMGLLK-RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ 533 (891)
Q Consensus 458 ~~~~~~~~~~~---~~~~~~~~~~~~l~~l~~-~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~ 533 (891)
..+++.+...+ ++....+.+..++|.++. ++.+.-+.||..+...+..++++.+..+.||++.+++.|++++..-.
T Consensus 1106 ~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE 1185 (1702)
T KOG0915|consen 1106 RALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELE 1185 (1702)
T ss_pred HHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccc
Confidence 55554443322 233345566667776653 22244578999999999999999999999999999999999987655
Q ss_pred hhHHHH-------------------------HHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHH
Q 002697 534 RRNLRI-------------------------VYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLEC 588 (891)
Q Consensus 534 ~~~~~~-------------------------~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 588 (891)
+.++.. .+++|+.++..... ..+..++|.+.+.+.....- .....+...
T Consensus 1186 ~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~-----~vLeelip~l~el~R~sVgl-~Tkvg~A~f 1259 (1702)
T KOG0915|consen 1186 PQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDI-----SVLEELIPRLTELVRGSVGL-GTKVGCASF 1259 (1702)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHhccCCC-CcchhHHHH
Confidence 433221 23444444433321 45677888888877764321 222356667
Q ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhh-hHHhhhccchHHHH
Q 002697 589 FTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGS-GIESLVAQSNLRDM 667 (891)
Q Consensus 589 l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~ 667 (891)
+..++..+|.++.||..+++..++..+.+- ....+.....+.+.++....+ .+..++. .+
T Consensus 1260 I~~L~~r~~~emtP~sgKll~al~~g~~dR--------------Nesv~kafAsAmG~L~k~Ss~dq~qKLie-----~~ 1320 (1702)
T KOG0915|consen 1260 ISLLVQRLGSEMTPYSGKLLRALFPGAKDR--------------NESVRKAFASAMGYLAKFSSPDQMQKLIE-----TL 1320 (1702)
T ss_pred HHHHHHHhccccCcchhHHHHHHhhccccc--------------cHHHHHHHHHHHHHHHhcCChHHHHHHHH-----HH
Confidence 778888999999999999999888766531 223333334455555554443 2433332 23
Q ss_pred HHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCC
Q 002697 668 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNT 715 (891)
Q Consensus 668 l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 715 (891)
+-..+.+. +..++.++..+.++.++..+-+..|...++|.++-....
T Consensus 1321 l~~~l~k~-es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~e 1367 (1702)
T KOG0915|consen 1321 LADLLGKD-ESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHE 1367 (1702)
T ss_pred HHHHhccC-CCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhH
Confidence 33333332 333477888888888888889999999999998766544
No 27
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.5e-15 Score=156.00 Aligned_cols=522 Identities=16% Similarity=0.162 Sum_probs=328.9
Q ss_pred hcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhh
Q 002697 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (891)
Q Consensus 103 ~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l 181 (891)
.++...+|.....+...+....+...-..+.|-..+.+++. +...|++.....+.+....... +.....+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~---------d~~~~~~ 97 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV---------DPRPISI 97 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc---------CcchhHH
Confidence 35667788776666555554433333345667777777664 4456666655555555432211 1234567
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhh-hhHhH
Q 002697 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF-LEPHL 260 (891)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~l 260 (891)
+..++..+..|++.+|.+...|+..+.......- ...+++.+.++++.....-|..+...+..+....... +.+
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~-- 172 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE-- 172 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh--
Confidence 8888888999999999999999988865432111 1233455555566556666777777666665544321 111
Q ss_pred HHHHHHHHhhcCCCCHHHHHH-HHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCC
Q 002697 261 RNLFEYMLQVNKDTDDDVALE-ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDL 339 (891)
Q Consensus 261 ~~l~~~~~~~~~~~~~~v~~~-a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i 339 (891)
..++..+.....+.....+++ ++-.....+.. ......||+-.++|.++.+....
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~--Lg~~~EPyiv~~lp~il~~~~d~---------------------- 228 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGN--LGPPFEPYIVPILPSILTNFGDK---------------------- 228 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHh--cCCCCCchHHhhHHHHHHHhhcc----------------------
Confidence 123334444445544444443 22222222222 33456688888888876654311
Q ss_pred CcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHH
Q 002697 340 KPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAI 419 (891)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l 419 (891)
.-.+|.+|..+...+...++..-++.++|.+...+.... |+.+.+++..+|.+
T Consensus 229 ------------------------~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~k---WrtK~aslellg~m 281 (569)
T KOG1242|consen 229 ------------------------INKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAK---WRTKMASLELLGAM 281 (569)
T ss_pred ------------------------chhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHh---hhhHHHHHHHHHHH
Confidence 114899999999999999987666666666555555556 99999999999999
Q ss_pred hhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHH
Q 002697 420 AEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAA 499 (891)
Q Consensus 420 ~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a 499 (891)
+...++.+...++.++|.+...+.|.++.||.++..++-++++.+. ..-+..++|.++.++.|++..+.+.
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid--------N~dI~~~ip~Lld~l~dp~~~~~e~- 352 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID--------NPDIQKIIPTLLDALADPSCYTPEC- 352 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHhcCcccchHHH-
Confidence 9999999999999999999999999999999999999999998764 3347899999999999987555443
Q ss_pred HHHHHH--HHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCC
Q 002697 500 CSAFAT--LEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN 577 (891)
Q Consensus 500 ~~al~~--l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 577 (891)
...|+. |+. ..-.|-+.-++|.+.+.+...+....+.+...++.++.-+.+...-.+|++.++|.+...+...
T Consensus 353 ~~~L~~ttFV~---~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~-- 427 (569)
T KOG1242|consen 353 LDSLGATTFVA---EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-- 427 (569)
T ss_pred HHhhcceeeee---eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC--
Confidence 222321 111 1123677888888889998888888888888999999887432111278888888877766653
Q ss_pred CCcch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHH
Q 002697 578 SDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIE 656 (891)
Q Consensus 578 ~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~ 656 (891)
.|++ .-+..+++.+.+..|...- +...+.+...+..... + .-+..+.+.++.+...+|.
T Consensus 428 -~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~------------~-~~~~g~aq~l~evl~~~~v--- 487 (569)
T KOG1242|consen 428 -VPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKS------------L-VDRSGAAQDLSEVLAGLGV--- 487 (569)
T ss_pred -ChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchh------------h-hhhHHHhhhHHHHHhcccc---
Confidence 3554 3456677788888776322 3344544443332110 0 1112233334444444332
Q ss_pred hhhccchHHHHHHHHhcC--CChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHH
Q 002697 657 SLVAQSNLRDMLLQCCMD--DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNAC 729 (891)
Q Consensus 657 ~~~~~~~l~~~l~~~~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~ 729 (891)
+++.. +++-+...... .++.++..-..++.-+-...+..+.+|+.++++.+.+.+.+. ++.++..+.
T Consensus 488 ~~~~~--~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~----de~~~~~~~ 556 (569)
T KOG1242|consen 488 EKVED--ILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADN----DEKGRDTAL 556 (569)
T ss_pred hHHHH--HHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhc----CCccccchh
Confidence 22221 33333333222 234455544444444444456788999999999999998866 445554443
No 28
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=4.2e-14 Score=149.64 Aligned_cols=507 Identities=13% Similarity=0.128 Sum_probs=311.4
Q ss_pred HHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhc--CCChHHHHHHHhhccC-CCCHHHHHHHHHHHHHhHHhhhccCC--h
Q 002697 15 NEICRLLEQ-QISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAE-GKSVEIRQAAGLLLKNNLRTAYKSMS--P 88 (891)
Q Consensus 15 ~~l~~~l~~-~~s~d~~~~r~~a~~~L~~~~~--~p~~~~~l~~il~~~~-~~~~~~R~~a~~~Lk~~i~~~w~~~~--~ 88 (891)
+++-..+-. ..++... .+++-.+.|--..+ .|+.|+.|+.=+.+.- +.|-. ---+.....+.|-++|+... +
T Consensus 87 e~ikslIv~lMl~s~~~-iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~-~~~gVL~tahsiFkr~R~efrSd 164 (960)
T KOG1992|consen 87 EQIKSLIVTLMLSSPFN-IQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFN-VINGVLVTAHSIFKRYRPEFRSD 164 (960)
T ss_pred HHHHHHHHHHHhcCcHH-HHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchH-HHHHHHHHHHHHHHhcCcccccH
Confidence 344443333 3445455 77777777766653 7888887766554321 22222 12233333345666776532 2
Q ss_pred hhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhcc--CChhHHhHHHHHHHHHHhhchhcc
Q 002697 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS--NDINHMEGAMDALSKICEDIPQVL 166 (891)
Q Consensus 89 ~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~--~~~~~r~~al~~L~~l~~~~~~~~ 166 (891)
+--..||- ++...+. ...+++....+.++. .+......-+..+..+++-+....
T Consensus 165 aL~~EIK~-------------------vLd~f~~-----Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn 220 (960)
T KOG1992|consen 165 ALWLEIKL-------------------VLDRFAE-----PLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLN 220 (960)
T ss_pred HHHHHHHH-------------------HHHhhHh-----HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhh
Confidence 22222221 1221111 123344444444422 222222333344444555555555
Q ss_pred ccCCCCCCCcchhhhHHHHHHhhcCC---------C----HHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCC
Q 002697 167 DSDVPGLAECPINIFLPRLLQFFQSP---------H----TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP 233 (891)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~l~~~l~~~---------~----~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 233 (891)
.++.+++||++++.+++.+.++++-. + ..+|...++.++.++...++.+.+.++.++...|.++.+.
T Consensus 221 ~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~ 300 (960)
T KOG1992|consen 221 FQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVST 300 (960)
T ss_pred cccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhc
Confidence 56888999999999999999999721 1 2578899999999999999999999999999999988654
Q ss_pred CHH-----HHHHHHHHHHHHHh--hChhhhh--HhH-----------------------HHHHHHHHhhcCCCCHHHHH-
Q 002697 234 SAE-----VRKLVCAAFNLLIE--VRPSFLE--PHL-----------------------RNLFEYMLQVNKDTDDDVAL- 280 (891)
Q Consensus 234 ~~~-----v~~~~~~~l~~l~~--~~~~~~~--~~l-----------------------~~l~~~~~~~~~~~~~~v~~- 280 (891)
.++ ....+++.|..+++ ++++.|. ..+ ++.++++.+.++++|-+.|+
T Consensus 301 s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR 380 (960)
T KOG1992|consen 301 SPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRR 380 (960)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHH
Confidence 332 22344555555543 2222221 011 22456677777877777655
Q ss_pred HHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCcc
Q 002697 281 EACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDD 360 (891)
Q Consensus 281 ~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d 360 (891)
.|++++..+++. ....+.+.+..-+..++.... .+
T Consensus 381 ~a~dlvrgL~~~--fe~~vt~v~~~~v~~~l~~y~-------------------------------------------~n 415 (960)
T KOG1992|consen 381 AAIDLVRGLCKN--FEGQVTGVFSSEVQRLLDQYS-------------------------------------------KN 415 (960)
T ss_pred HHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHhc-------------------------------------------cC
Confidence 558999999887 334444444444444432111 12
Q ss_pred ccccccHHHHHHHHHHHHHHHcC-----c-------chhhhhHHHHHHhhccCC-CcchHHHHHHHHHHHHHhhcchhhh
Q 002697 361 IVNVWNLRKCSAAALDVLSNVFG-----D-------EILPTLMPVIQAKLSASG-DEAWKDREAAVLALGAIAEGCIKGL 427 (891)
Q Consensus 361 ~~~~~~~r~~a~~~l~~l~~~~~-----~-------~~~~~l~~~l~~~l~~~~-~~~~~~r~aa~~~l~~l~~~~~~~~ 427 (891)
++.+|+.+.++..++..++...+ - .+...+...+...+.+++ ++++-.|.+++.-+-..-...+
T Consensus 416 PS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~--- 492 (960)
T KOG1992|consen 416 PSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG--- 492 (960)
T ss_pred CCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCC---
Confidence 45579889999999999988742 1 122233333344444422 2235556555542222211111
Q ss_pred hhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhh----hhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002697 428 YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ----DIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAF 503 (891)
Q Consensus 428 ~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al 503 (891)
++++-.++|.++..+..+...|..+|+.++.++...... ...++...++...++..+++.++-+.+.-.+..++|+
T Consensus 493 ~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaI 572 (960)
T KOG1992|consen 493 KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAI 572 (960)
T ss_pred hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHH
Confidence 356778899999999999999999999999988765433 1134456778888999999988877667778889999
Q ss_pred HHHHHHhcccchHhHHHHHHHHHHHHc----ccchhHHH-HHHHHHHHHHHHhcccCC--chhhhhhhhHHHHHHHHcCC
Q 002697 504 ATLEEEAAEELAPRLEIILQHLMMAFG----KYQRRNLR-IVYDAIGTLADAVGFELN--QPVYLDILMPPLIAKWQQLP 576 (891)
Q Consensus 504 ~~l~~~~~~~~~~~l~~il~~l~~~l~----~~~~~~~~-~~~~al~~l~~~~~~~~~--~~~~~~~l~~~l~~~l~~~~ 576 (891)
.+++....+.+.|+.+.++..|.+++. +++.+... ..+++++.+++..++.-- -+.+...++|.+...+.+.-
T Consensus 573 mRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI 652 (960)
T KOG1992|consen 573 MRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDI 652 (960)
T ss_pred HHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888999999999888888774 44555554 789999999987665430 02577788887777776521
Q ss_pred CCCcch-HhHHHHHHHHHHHhcc
Q 002697 577 NSDKDL-FPLLECFTSIAQALGA 598 (891)
Q Consensus 577 ~~~~~~-~~~~~~l~~i~~~~~~ 598 (891)
.+. ..++..++.+....+.
T Consensus 653 ---~EfiPYvfQlla~lve~~~~ 672 (960)
T KOG1992|consen 653 ---QEFIPYVFQLLAVLVEHSSG 672 (960)
T ss_pred ---HHHHHHHHHHHHHHHHhcCC
Confidence 122 4566666666665544
No 29
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=8.1e-15 Score=149.89 Aligned_cols=461 Identities=17% Similarity=0.232 Sum_probs=294.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhh---cCChHHH
Q 002697 34 SQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG---AADRHIR 110 (891)
Q Consensus 34 ~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~---~~~~~vr 110 (891)
.+|..+|.+|++.++.|..+-+++.. ..+.+...+|+..+|+++...+..+++......|+.++..++ +..+.+|
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~--~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~ 79 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQ--KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIR 79 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHH
Confidence 36889999999999999999999975 478899999999999999999999999888888887777554 3344899
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCC---C-CC---CCcchhhhHH
Q 002697 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV---P-GL---AECPINIFLP 183 (891)
Q Consensus 111 ~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~---~-~~---~~~~~~~l~~ 183 (891)
.+++-+++.++-..+ .|.+-++.+.+.+.+..+. ...-+..|..+.++..+.-.... + ++ .......++-
T Consensus 80 tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~ 156 (559)
T KOG2081|consen 80 TQLAVAVAALALHMP--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLV 156 (559)
T ss_pred HHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHH
Confidence 999999999988764 6877666666666665554 33455555555554332111000 0 00 0111233344
Q ss_pred HHHHhhcC---CCHHHHHHHHHHHHHHhc--ccch-hhHHhHHHHHHHHHHhhCC-------------------------
Q 002697 184 RLLQFFQS---PHTSLRKLSLGSVNQFIM--LMPS-ALFVSMDQYLQGLFLLSND------------------------- 232 (891)
Q Consensus 184 ~l~~~l~~---~~~~vr~~al~~l~~~~~--~~~~-~~~~~~~~~l~~l~~~~~~------------------------- 232 (891)
.+...++. ++..+...+++|++++.. .++. .+... ..++..++..+++
T Consensus 157 ~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~-~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~~ 235 (559)
T KOG2081|consen 157 FLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLAS-FPLITLAFRSLSDDELHEEATECICALLYCSLDRSEGL 235 (559)
T ss_pred HHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhh-hHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhccC
Confidence 44444544 346778888999988876 3332 22221 1122333332221
Q ss_pred -----------------------CCHHHHHHHHHHHHHHHhhChhhhhH---hHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 002697 233 -----------------------PSAEVRKLVCAAFNLLIEVRPSFLEP---HLRNLFEYMLQVNKDTDDDVALEACEFW 286 (891)
Q Consensus 233 -----------------------~~~~v~~~~~~~l~~l~~~~~~~~~~---~l~~l~~~~~~~~~~~~~~v~~~a~~~l 286 (891)
.+.+.+.+.+..+..+.+.+...+.. ..-.+++.++-...+.+.++....+.||
T Consensus 236 ~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW 315 (559)
T KOG2081|consen 236 PLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFW 315 (559)
T ss_pred chhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhh
Confidence 12233333444444443332211110 1123344445555666778888889999
Q ss_pred HHhhcc------CCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCcc
Q 002697 287 HSYFEA------QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDD 360 (891)
Q Consensus 287 ~~l~~~------~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d 360 (891)
..+.+. ......++||..+++..+.....+.. |.+.. .| +
T Consensus 316 ~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~-~~~~l-----------------------------~E-e--- 361 (559)
T KOG2081|consen 316 YSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPP-DQFDL-----------------------------PE-E--- 361 (559)
T ss_pred hhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCC-ccccC-----------------------------cc-c---
Confidence 998765 12345678999999999998888765 22100 00 1
Q ss_pred ccccccHHHHHHHHHHHHHHHcCc-chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHh
Q 002697 361 IVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLI 439 (891)
Q Consensus 361 ~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~ 439 (891)
+++....|......+...+..+|. +.+..+.-.+.+ +++. |..-+|+++.+..++......-.+.+++++..+.
T Consensus 362 ~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~---We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~ 436 (559)
T KOG2081|consen 362 ESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNAS---WEEVEAALFILRAVAKNVSPEENTIMPEVLKLIC 436 (559)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCc---hHHHHHHHHHHHHHhccCCccccchHHHHHHHHh
Confidence 112335788899999999998887 555544444433 3445 9999999999999998776544556666666555
Q ss_pred hhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH-
Q 002697 440 PLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL- 518 (891)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l- 518 (891)
+.= ....+|++++..+|.+.+|+.. .+..++.++..+...+.... ....+..++..++..|.....+++
T Consensus 437 nlp--~Q~~~~~ts~ll~g~~~ew~~~------~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~ 506 (559)
T KOG2081|consen 437 NLP--EQAPLRYTSILLLGEYSEWVEQ------HPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIP 506 (559)
T ss_pred CCc--cchhHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 432 2233999999999999999974 56778888888888887644 777888888888888865554444
Q ss_pred --HHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhc
Q 002697 519 --EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (891)
Q Consensus 519 --~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~ 552 (891)
..++..+.....+ .... ..+..++.++...+
T Consensus 507 ~~~~l~~~l~~~~~~--~e~a-~l~~~~s~i~~~lp 539 (559)
T KOG2081|consen 507 SLLELIRSLDSTQIN--EEAA-CLLQGISLIISNLP 539 (559)
T ss_pred HHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCC
Confidence 4444444443333 1122 14566666665544
No 30
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=7.8e-12 Score=138.83 Aligned_cols=752 Identities=14% Similarity=0.121 Sum_probs=418.0
Q ss_pred CCCCHHHHHHHHHHHHHHhc--------CCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHH--
Q 002697 26 SPSSTADKSQIWQQLQQYSQ--------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK-- 95 (891)
Q Consensus 26 s~d~~~~r~~a~~~L~~~~~--------~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~-- 95 (891)
+++.. +++.+-.-|..+.. .+.....+..++.-.-...|.+|..|...+++.+...--..+.+ -..+.
T Consensus 106 stn~s-vlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~-HpA~~~v 183 (1176)
T KOG1248|consen 106 STNGS-VLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFAPDAE-HPASLSV 183 (1176)
T ss_pred cccch-HHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCCcccc-chHHHHH
Confidence 46666 89998888876431 23333444444322225678999999988887776432111111 11111
Q ss_pred -HhHhhhhhcC-ChHHHHHHHHHHHHHHhh-cccCchHH-----HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccc
Q 002697 96 -SELLPCLGAA-DRHIRSTVGTIVSVVVQL-GGIAGWLE-----LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (891)
Q Consensus 96 -~~ll~~L~~~-~~~vr~~~a~~l~~i~~~-~~~~~w~~-----ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~ 167 (891)
...++.+... .+. ....++..+.-. +.-..||. +...++......+..++-.+++++..++...++.+.
T Consensus 184 ak~cl~~~e~~~~~a---~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~ 260 (1176)
T KOG1248|consen 184 AKFCLALIESKLGSA---ENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALA 260 (1176)
T ss_pred HHHHHHHHHhhhchH---HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcch
Confidence 1222222211 111 111122222111 12233764 445566666677788999999999999887665332
Q ss_pred cCCCCCCCcchhhhHHHHHHhhc----CC-CHHHHHHHHHHHHHHh----cccchhhHHhHHHHHHHHHHhhCCCCHHHH
Q 002697 168 SDVPGLAECPINIFLPRLLQFFQ----SP-HTSLRKLSLGSVNQFI----MLMPSALFVSMDQYLQGLFLLSNDPSAEVR 238 (891)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~----~~-~~~vr~~al~~l~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~ 238 (891)
..+.-.++..+. +. +..+-..-++++..-. ...++......+.++..++++..+..+++-
T Consensus 261 -----------a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~ 329 (1176)
T KOG1248|consen 261 -----------AELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEELV 329 (1176)
T ss_pred -----------HHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHH
Confidence 222333333333 22 3333333333433322 222333445667777888887777788888
Q ss_pred HHHHHHHHHHHhhChhhhhHhHHHHHHHHH-hhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCC
Q 002697 239 KLVCAAFNLLIEVRPSFLEPHLRNLFEYML-QVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA 317 (891)
Q Consensus 239 ~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~ 317 (891)
..+.+++..+...++. +.+.+....+ ..+.-....+...++..+..+.+. +.....|++...+..+-
T Consensus 330 q~a~q~l~~il~~sv~----~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek--~G~~s~~~l~~~L~~l~------ 397 (1176)
T KOG1248|consen 330 QAASQSLKEILKESVT----VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEK--CGELSGPELTKTLEGLC------ 397 (1176)
T ss_pred HHHHHHHHHHhcccCc----ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHH--hhhhcCHHHHHHHHHHH------
Confidence 8899999888877665 2233333322 223334445666667777666665 44444455444333331
Q ss_pred hhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHh
Q 002697 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397 (891)
Q Consensus 318 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~ 397 (891)
.|... + | ...+..-..+++.....+|++.+=.++|.=.
T Consensus 398 -----~lr~~-----------------------------~--d----~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl-- 435 (1176)
T KOG1248|consen 398 -----DLRAS-----------------------------P--D----FFHKLQLDQCIGSAVRAMGPERVLTILPLNL-- 435 (1176)
T ss_pred -----HhhcC-----------------------------C--C----CccHHHHHHHHHHHHHhhCHHHHHHHcchhc--
Confidence 11000 0 0 0123356677888888888875545555422
Q ss_pred hccCCCcchHHHHHHHHHHHHHhhcchh-hhhhhHHHHHHHHhh------hcCCCChHHHHHHHHHHHhhHHHHhhhhC-
Q 002697 398 LSASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIP------LLDDKFPLIRSISCWTLSRFSKFIVQDIG- 469 (891)
Q Consensus 398 l~~~~~~~~~~r~aa~~~l~~l~~~~~~-~~~~~l~~i~~~l~~------~l~d~~~~vr~~a~~~l~~~~~~~~~~~~- 469 (891)
..+ ..+..-.|.|..+-.+... .+.-+...++|.... .++.+...++ ..-.+..++...++.+|.
T Consensus 436 ~~~------s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~-~~~tl~~QLW~LLP~FC~~ 508 (1176)
T KOG1248|consen 436 HAE------SLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVS-LYDTLVDQLWSLLPGFCNY 508 (1176)
T ss_pred ccc------ccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHH-HHHHHHHHHHHhChhhhCC
Confidence 111 1123333445544443321 111222223333222 2233322222 222233455666666665
Q ss_pred CCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---------cccchHhHHHHHHHHHHHHcccchhHHHHH
Q 002697 470 HQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA---------AEELAPRLEIILQHLMMAFGKYQRRNLRIV 540 (891)
Q Consensus 470 ~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~---------~~~~~~~l~~il~~l~~~l~~~~~~~~~~~ 540 (891)
|.+....+..+.+.+...+... +..|...|.+|..+++.+ .+.+..|..+.++.+++.........+ ..
T Consensus 509 P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~ 586 (1176)
T KOG1248|consen 509 PVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KI 586 (1176)
T ss_pred CccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-cc
Confidence 5556666888888888888765 589999999999999875 133566788899999988865543322 22
Q ss_pred HHHHHHHHHHhc-ccCCchhhhhhhhHHHHHHHHcCC-CCCcch-----HhHHHHHHHHHHHhccccccchHHHHHHHHH
Q 002697 541 YDAIGTLADAVG-FELNQPVYLDILMPPLIAKWQQLP-NSDKDL-----FPLLECFTSIAQALGAGFTQFAQPVFQRCIN 613 (891)
Q Consensus 541 ~~al~~l~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~-----~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~ 613 (891)
.++......... ..+. .....+...+.+...... +.+..+ ..++..+..++.+..+. +...++ .+..
T Consensus 587 l~~~~~~L~~i~~~~~~--~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~---~vs~l~-~v~~ 660 (1176)
T KOG1248|consen 587 LASRSTVLEIIRVDYFT--VTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTES---QVSKLF-TVDP 660 (1176)
T ss_pred HHHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccch---hHHHHH-HhhH
Confidence 222222222111 1111 111122223333332211 111111 23333333333322221 112222 1111
Q ss_pred HHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHH-Hhhh-HHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHH
Q 002697 614 IIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEG-LGSG-IESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLA 691 (891)
Q Consensus 614 ~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~-~~~~-~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~ 691 (891)
-..+. ....+...+.+++..+... .|+. ....+. .++..+...+++.....+..++.++..+.
T Consensus 661 ~~e~~-------------~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~--~I~n~L~ds~qs~~~~~~~~rl~~L~~L~ 725 (1176)
T KOG1248|consen 661 EFENS-------------SSTKVQKKAYRLLEELSSSPSGEGLVEQRID--DIFNSLLDSFQSSSSPAQASRLKCLKRLL 725 (1176)
T ss_pred Hhhcc-------------ccHHHHHHHHHHHHHHhcCCchhhHHHHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 11110 0344556677777777665 1111 222333 37777878888888888999999999999
Q ss_pred HhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHH--Hhchhh-hhhHHHHHHHHHHHHhcCChhhh-hh
Q 002697 692 RVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA--VKARQE-ISPIVMTVVLCLVPILKHSEELN-KS 767 (891)
Q Consensus 692 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~--~~~~~~-~~~~~~~il~~l~~~l~~~~~~~-~~ 767 (891)
+.++.....+++..++.++-.+++. +...|++|..+|-.|+ ...-.. -.| ...+++..+.++..+.... ..
T Consensus 726 ~~~~~e~~~~i~k~I~EvIL~~Ke~----n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~Isagl~gd~~~ 800 (1176)
T KOG1248|consen 726 KLLSAEHCDLIPKLIPEVILSLKEV----NVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSIISAGLVGDSTR 800 (1176)
T ss_pred HhccHHHHHHHHHHHHHHHHhcccc----cHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHHHhhhcccHHH
Confidence 9999888889999999998888666 7788999998888887 222111 112 3445555555555442101 12
Q ss_pred HHHhHHHHHhhhhhhcCCccC-cchhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChhhhH-hhHHHHhhHhhcccc
Q 002697 768 LIENSAITLGRLAWVCPELVS-PHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGAL-SSLVFMCRAIASWHE 845 (891)
Q Consensus 768 ~~~~~~~~l~~l~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~-~~l~~~~~~~~~~~~ 845 (891)
++...+.+++.+.......+. +.+..++..++..|.. +..+.+..|+..+..++..-|..+. ++++.++..++.|.+
T Consensus 801 ~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s-~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~ 879 (1176)
T KOG1248|consen 801 VVASDIVAITHILQEFKNILDDETLEKLISMVCLYLAS-NSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSH 879 (1176)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHH
Confidence 222226778888877666553 5688999999999886 3345566777778888888787665 899999999999988
Q ss_pred cCchhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHHh
Q 002697 846 IRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKL 886 (891)
Q Consensus 846 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 886 (891)
.++..++-.++.++..+.+.||. +.+-+-+|+..++.|
T Consensus 880 d~k~~~r~Kvr~LlekLirkfg~---~eLe~~~pee~~klL 917 (1176)
T KOG1248|consen 880 DHKIKVRKKVRLLLEKLIRKFGA---EELESFLPEEDMKLL 917 (1176)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCH---HHHHhhCHHHHHHHH
Confidence 77778999999999999999995 444444666666665
No 31
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.76 E-value=1.5e-14 Score=147.52 Aligned_cols=645 Identities=14% Similarity=0.112 Sum_probs=386.2
Q ss_pred CChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHH
Q 002697 105 ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (891)
Q Consensus 105 ~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 184 (891)
++...|..--+++.+++...+.+. .+..+..-+.+.++.+|...-++.+.+++.++- ++++|.
T Consensus 258 ed~~~r~~g~eii~nL~~~~Gl~~---~vs~mrpDi~~~deYVRnvt~ra~~vva~algv--------------~~llpf 320 (975)
T COG5181 258 EDLKRRCMGREIILNLVYRCGLGF---SVSSMRPDITSKDEYVRNVTGRAVGVVADALGV--------------EELLPF 320 (975)
T ss_pred ccHHHhcccHHHHHHHHHHhccce---eeeeccCCcccccHHHHHHHHHHHHHHHHhhCc--------------HHHHHH
Confidence 444555555556666655432211 112222223456788898888888887775542 677888
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHH
Q 002697 185 LLQFFQSP-HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (891)
Q Consensus 185 l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l 263 (891)
+-..+.+. +.+-|+.++++...+....+-...+++..++..+-.++.|.+..+|..+..++..+++..+..-...++.+
T Consensus 321 l~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~v 400 (975)
T COG5181 321 LEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEV 400 (975)
T ss_pred HHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHH
Confidence 87777775 88999999999999998888888899999999999999888888999999999999987766655667788
Q ss_pred HHHHHhhcCCCCHHH---HHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCC
Q 002697 264 FEYMLQVNKDTDDDV---ALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (891)
Q Consensus 264 ~~~~~~~~~~~~~~v---~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~ 340 (891)
+..++...+...... -..|..|+.-+.+ ++....+....+.+++..+..++++
T Consensus 401 l~pLw~g~~~hrgk~l~sfLkA~g~iiplm~----peYa~h~tre~m~iv~ref~spdee-------------------- 456 (975)
T COG5181 401 LCPLWEGASQHRGKELVSFLKAMGFIIPLMS----PEYACHDTREHMEIVFREFKSPDEE-------------------- 456 (975)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhccccccCC----hHhhhhhHHHHHHHHHHHhCCchhh--------------------
Confidence 887776654322111 1122222222222 1222223333344443322221110
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCc----chhhhhHHHHHHhhccCCCcchHHHHHHH---
Q 002697 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAV--- 413 (891)
Q Consensus 341 ~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~r~aa~--- 413 (891)
- +--...+.+++...|. .....+.|.+ -+.- |..|-|+=
T Consensus 457 --------------------------m-kk~~l~v~~~C~~v~~~tp~~lr~~v~pef----F~~f---w~rr~A~dr~~ 502 (975)
T COG5181 457 --------------------------M-KKDLLVVERICDKVGTDTPWKLRDQVSPEF----FSPF---WRRRSAGDRRS 502 (975)
T ss_pred --------------------------c-chhHHHHHHHHhccCCCCHHHHHHhhcHHh----hchH---HHhhhcccccc
Confidence 0 1112223333334332 1122333322 2233 76665541
Q ss_pred -----HHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHh
Q 002697 414 -----LALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (891)
Q Consensus 414 -----~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 488 (891)
.+-..++...+ -+.++..++..++|+...-|..++.+.+++...++.. ......-+.++..++..+
T Consensus 503 ~k~v~~ttvilAk~~g------~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~---~~dErleerl~d~il~Af 573 (975)
T COG5181 503 YKQVVLTTVILAKMGG------DPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRL---GFDERLEERLYDSILNAF 573 (975)
T ss_pred cceeehhHHHHHHHcC------ChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccc---cccHHHHHHHHHHHHHHH
Confidence 11112222111 1346777888889988888888888888887766532 123334455666777666
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHH
Q 002697 489 LDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPL 568 (891)
Q Consensus 489 ~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l 568 (891)
+..+..+.. ...+++....+.+-..+||++.|+..+++.|++....++..+.+.+++++.....--. .+.+..+-..|
T Consensus 574 qeq~~t~~~-il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~iL 651 (975)
T COG5181 574 QEQDTTVGL-ILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE-TKELAKLGNIL 651 (975)
T ss_pred HhccccccE-EEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhHHH
Confidence 644322211 2233444444445566899999999999999999888888888888887765432110 02333333333
Q ss_pred HHHHHcCCCCCcch-HhHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHH
Q 002697 569 IAKWQQLPNSDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSG 646 (891)
Q Consensus 569 ~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~ 646 (891)
.+ +.+.+.+++ ..++.++-.|....+- .++|-+..++|.+..+|.+.. ..+....+++++.
T Consensus 652 yE---~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh--------------~Kv~~nti~lvg~ 714 (975)
T COG5181 652 YE---NLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKH--------------QKVVANTIALVGT 714 (975)
T ss_pred HH---hcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhh--------------HHHhhhHHHHHHH
Confidence 33 333345665 6778888777777775 688999999999999998653 2333445555666
Q ss_pred HHHHHhhhHHhhhccchHHHHHH---HHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchh
Q 002697 647 LAEGLGSGIESLVAQSNLRDMLL---QCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVS 723 (891)
Q Consensus 647 l~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~ 723 (891)
+... ...|++....+.+.. ..++..+.++|.+|...+|.+++..|.+ +++..++..|+.. .-.
T Consensus 715 I~~~----~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq------dvL~~LlnnLkvq----eRq 780 (975)
T COG5181 715 ICMN----SPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ------DVLDILLNNLKVQ----ERQ 780 (975)
T ss_pred HHhc----CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH------HHHHHHHhcchHH----HHH
Confidence 5443 223443223444433 3345667899999999999999988742 4666777777654 234
Q ss_pred HhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhcc
Q 002697 724 VANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALS 803 (891)
Q Consensus 724 v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~ 803 (891)
-|.....+++..+..++. | .+++.|+.-...+. ..+.+.+..+++.+..+-.+.-..|+-.+.|.+-++|.
T Consensus 781 ~RvctsvaI~iVae~cgp----f--sVlP~lm~dY~TPe---~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAlt 851 (975)
T COG5181 781 QRVCTSVAISIVAEYCGP----F--SVLPTLMSDYETPE---ANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALT 851 (975)
T ss_pred hhhhhhhhhhhhHhhcCc----h--hhHHHHHhcccCch---hHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 455555677777766653 2 23444444444443 45566677777777766555555688888888888887
Q ss_pred CCCCchHHHHHHHHHHHHHhhChhhhH--hhHHHHhhHhhc-ccccCchhHHHHHHHHHHHHHhhcChhhH-HHHHhcC
Q 002697 804 MIRDDTEKEDAFRGLCAMVKANPSGAL--SSLVFMCRAIAS-WHEIRSEELHNEVCQVLHGYKQMLRNGAW-DQCMSAL 878 (891)
Q Consensus 804 ~~~~~~e~~~~~~~l~~l~~~~~~~~~--~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~ 878 (891)
+ .|..-+..+...+-.++-. ++... .....+++.+-. -- .+.+++...+.+-+..+++++|++.+ +.+.+.|
T Consensus 852 D-rD~vhRqta~nvI~Hl~Ln-c~gtg~eda~IHLlNllwpNIl-e~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGL 927 (975)
T COG5181 852 D-RDPVHRQTAMNVIRHLVLN-CPGTGDEDAAIHLLNLLWPNIL-EPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGL 927 (975)
T ss_pred c-cchHHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHhhhhcc-CCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 6 5555677776666666544 33221 222222222211 11 14567888889999999999987554 4444443
No 32
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.1e-11 Score=134.95 Aligned_cols=665 Identities=12% Similarity=0.118 Sum_probs=382.4
Q ss_pred cCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCC--hhHHhHHHHHH-HHHHhhchhccccCCCC----CCCc
Q 002697 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND--INHMEGAMDAL-SKICEDIPQVLDSDVPG----LAEC 176 (891)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~--~~~r~~al~~L-~~l~~~~~~~~~~~~~~----~~~~ 176 (891)
++++..|+.+-+-+..+- +-|+++..+++.+.+++ ..+|.+|.--| ..+.+..+..- .+| ..+.
T Consensus 15 d~d~~~R~~AE~~L~q~~------K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~---~~g~~~~I~e~ 85 (1010)
T KOG1991|consen 15 DSDAKERKAAEQQLNQLE------KQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE---APGRPFGIPEE 85 (1010)
T ss_pred CCChHHHHHHHHHHHHhh------cCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC---CCCCcCCCChH
Confidence 566889997666555433 44778888888877653 35566655555 55666554431 111 1122
Q ss_pred chhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCh---
Q 002697 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--- 253 (891)
Q Consensus 177 ~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~--- 253 (891)
.-.-+-..++..+-....-+|..--.|++.++...- -.+-+.+++.+...+++.+...--.++-|+-.++..+.
T Consensus 86 dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~---p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~ 162 (1010)
T KOG1991|consen 86 DKAVIRENILETIVQVPELIRVQLTACLNTIIKADY---PEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKK 162 (1010)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCC---cccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcc
Confidence 222333445555555555677777778888775431 13335556667777777776666777778877776543
Q ss_pred --------hhhhHhHHHHHHHHHhhcCCCCHH---HHHHHHHHHHHhhccCCchhhHHh-hhhhhHHHHHhhccCChhhh
Q 002697 254 --------SFLEPHLRNLFEYMLQVNKDTDDD---VALEACEFWHSYFEAQLPHENLKE-FLPRLVPVLLSNMIYADDDE 321 (891)
Q Consensus 254 --------~~~~~~l~~l~~~~~~~~~~~~~~---v~~~a~~~l~~l~~~~~~~~~~~~-~l~~li~~ll~~l~~~~~d~ 321 (891)
..+...++.+.+...+.+...+.+ .....+..+..++-+........+ .+..-+..++..+...-. .
T Consensus 163 ~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP-~ 241 (1010)
T KOG1991|consen 163 DEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVP-V 241 (1010)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCC-h
Confidence 123344555555555555554443 334455555555444222111111 111112222221111100 0
Q ss_pred hhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcch--h------------
Q 002697 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI--L------------ 387 (891)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~--~------------ 387 (891)
|.. ..|+++....+.|+.++-|...+.++.+.+|+.. .
T Consensus 242 E~l----------------------------~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~ 293 (1010)
T KOG1991|consen 242 EVL----------------------------SLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLK 293 (1010)
T ss_pred hcc----------------------------cCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence 000 0111222234556777888888877777776411 1
Q ss_pred ---hhhHHHHHHhhc---cCC-----------------------------------------------------------
Q 002697 388 ---PTLMPVIQAKLS---ASG----------------------------------------------------------- 402 (891)
Q Consensus 388 ---~~l~~~l~~~l~---~~~----------------------------------------------------------- 402 (891)
+.++..+.+.+. .+.
T Consensus 294 n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~E 373 (1010)
T KOG1991|consen 294 NFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYE 373 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHH
Confidence 111111111110 000
Q ss_pred ---------CcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC--------CCChHHHHHHHHHHHhhHHHHh
Q 002697 403 ---------DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD--------DKFPLIRSISCWTLSRFSKFIV 465 (891)
Q Consensus 403 ---------~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--------d~~~~vr~~a~~~l~~~~~~~~ 465 (891)
++...-+-||...+-.++..- -+..++.+++++..-+. ..+++-+..|+.++|.+++.+.
T Consensus 374 YiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR---~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~ 450 (1010)
T KOG1991|consen 374 YIRKKFDIFEDGYSPDTAALDFLTTLVSKR---GKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILL 450 (1010)
T ss_pred HHHhcCchhcccCCCcHHHHHHHHHHHHhc---chhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHc
Confidence 000111223333333332211 12345556666555444 2456788889999999998775
Q ss_pred hhhCCCcchhhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hcccchHhHHHHHHHHHHHHc-ccchhHHHHHHH
Q 002697 466 QDIGHQNGREQFE-KVLMGLLKRILDTNKRVQEAACSAFATLEEE-AAEELAPRLEIILQHLMMAFG-KYQRRNLRIVYD 542 (891)
Q Consensus 466 ~~~~~~~~~~~~~-~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~-~~~~~~~~l~~il~~l~~~l~-~~~~~~~~~~~~ 542 (891)
+. ......++ -+++.++..++++..-.|.+||+.+..+++. .++ ...+.++++...+++. +...+++..+.-
T Consensus 451 K~---s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAal 525 (1010)
T KOG1991|consen 451 KK---SPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAAL 525 (1010)
T ss_pred cC---CchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHH
Confidence 32 11222233 3556677778888889999999999999853 221 2245567777777777 556678888888
Q ss_pred HHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHh
Q 002697 543 AIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAK 622 (891)
Q Consensus 543 al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 622 (891)
|+..++...... ++|+...+|++++.+-+.. ++-+...+..++..++..+++++.||+.++++.+...+....+..
T Consensus 526 ALq~fI~~~~~~---~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~ 601 (1010)
T KOG1991|consen 526 ALQSFISNQEQA---DEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTS 601 (1010)
T ss_pred HHHHHHhcchhh---hhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhcc
Confidence 999998875533 1455555555555443322 112223567788888999999999999999999887665544321
Q ss_pred hcCcccCCCCchhHH-HHHhhhHHHHHHHHhhhHH--hhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhH
Q 002697 623 VDSVAAGAQYDKEFV-VCCLDLLSGLAEGLGSGIE--SLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ 699 (891)
Q Consensus 623 ~~~~~~~~e~d~~~~-~~~~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 699 (891)
+++.+++ .|+.+. .+.+.++++++.++...-. ..+. +.+.|.+...+++...++-+.++.++..+.-. ...+.
T Consensus 602 -~~~~~~~-ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le-~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~-~~~Is 677 (1010)
T KOG1991|consen 602 -EDEDESD-DDKAIAASGILRTISTILLSLENHPEVLKQLE-PIVLPVIGFILKNDITDFYEELLEIVSSLTFL-SKEIS 677 (1010)
T ss_pred -CCCCccc-hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh-hcccC
Confidence 1111122 255543 4677788888877765421 1111 34777777777776666666666655444322 24577
Q ss_pred HhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhh---hHHHHHHHHHHHHhcCChhhhhhHHHhHHHHH
Q 002697 700 ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEIS---PIVMTVVLCLVPILKHSEELNKSLIENSAITL 776 (891)
Q Consensus 700 ~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~---~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l 776 (891)
|-+-++++.+.+.+++. ....-....-++..++...+..+. .|...++..+..++.+.. ....=.+.++..+
T Consensus 678 p~mW~ll~li~e~~~~~----~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~-~~D~d~~~a~kLl 752 (1010)
T KOG1991|consen 678 PIMWGLLELILEVFQDD----GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSEN-GEDSDCESACKLL 752 (1010)
T ss_pred HHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCC-CchHHHHHHHHHH
Confidence 88888999999888877 445556666777766665544432 245555555556665542 2344556688888
Q ss_pred hhhhhhcCCccCcchhHHHHHHHhhccC-CCCchHHHHHHHHHHHHHhhChhhhH
Q 002697 777 GRLAWVCPELVSPHMEHFMQPWCIALSM-IRDDTEKEDAFRGLCAMVKANPSGAL 830 (891)
Q Consensus 777 ~~l~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~e~~~~~~~l~~l~~~~~~~~~ 830 (891)
.-++..+.+.+.++++.++...++.+.. .++.+-+..+++.....+..+|...+
T Consensus 753 e~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL 807 (1010)
T KOG1991|consen 753 EVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTL 807 (1010)
T ss_pred HHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHH
Confidence 9999888887777888888888888877 45566677788877776666776544
No 33
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2.1e-14 Score=149.23 Aligned_cols=514 Identities=13% Similarity=0.119 Sum_probs=333.2
Q ss_pred cCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHH
Q 002697 190 QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML 268 (891)
Q Consensus 190 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~ 268 (891)
.|+.+.+|..-+++...++...+.. ....+++..-+.++. .+..+|....-..+.++.+ .....+....++..++
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~---~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~-~~~~d~~~~~~~~~~~ 102 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQ---NVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFH-LQIVDPRPISIIEILL 102 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHH---HHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHh-ccccCcchhHHHHHHH
Confidence 5667788888887777766543322 223334444444432 2444555554444444432 2233344456777777
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccC
Q 002697 269 QVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348 (891)
Q Consensus 269 ~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 348 (891)
.....+.+.+++....++..+.-.. ...-.. ...+.+.+.+..+.
T Consensus 103 ~~~~tps~~~q~~~~~~l~~~~~~~--~~~~~~---~~l~~l~~ll~~~~------------------------------ 147 (569)
T KOG1242|consen 103 EELDTPSKSVQRAVSTCLPPLVVLS--KGLSGE---YVLELLLELLTSTK------------------------------ 147 (569)
T ss_pred HhcCCCcHHHHHHHHHHhhhHHHHh--hccCHH---HHHHHHHHHhcccc------------------------------
Confidence 7777788888887777766543321 000011 11122222222100
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchh--hhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhh
Q 002697 349 HGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG 426 (891)
Q Consensus 349 ~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~ 426 (891)
..-|..+...+..+....+-..+ ..++..+...+.+... ...|+++..++.......+..
T Consensus 148 ----------------~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~--~~~re~~~~a~~~~~~~Lg~~ 209 (569)
T KOG1242|consen 148 ----------------IAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKS--ALNREAALLAFEAAQGNLGPP 209 (569)
T ss_pred ----------------HHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccch--hhcHHHHHHHHHHHHHhcCCC
Confidence 11244455555554444432111 2345556666665442 677888888888888877888
Q ss_pred hhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 002697 427 LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (891)
Q Consensus 427 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l 506 (891)
+.||+..++|.++..+.|..+.||.+|..+...+...+.. .-...+++.++..+.+..++.+..+...++.+
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~--------~aVK~llpsll~~l~~~kWrtK~aslellg~m 281 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA--------YAVKLLLPSLLGSLLEAKWRTKMASLELLGAM 281 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc--------chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 8999999999999999999999999999998888776542 33456677777777666778889999999988
Q ss_pred HHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHH
Q 002697 507 EEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLL 586 (891)
Q Consensus 507 ~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 586 (891)
.+..+..+.-+++.++|.+...+.+.+.++++.+.+++..+...... +-+..++|.+++.+..... ...
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-----~dI~~~ip~Lld~l~dp~~------~~~ 350 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-----PDIQKIIPTLLDALADPSC------YTP 350 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc-----HHHHHHHHHHHHHhcCccc------chH
Confidence 88889999999999999999999999999999999999988887764 4578888999888876531 223
Q ss_pred HHHHHHHHHhccccccchHH-HHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHH--hhhHHhhhccch
Q 002697 587 ECFTSIAQALGAGFTQFAQP-VFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGL--GSGIESLVAQSN 663 (891)
Q Consensus 587 ~~l~~i~~~~~~~~~~~~~~-i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~--~~~~~~~~~~~~ 663 (891)
+|+-.+.. ..|..|.+. -...++.++......+ +......+...++.++.-. .....+|++.
T Consensus 351 e~~~~L~~---ttFV~~V~~psLalmvpiL~R~l~eR----------st~~kr~t~~IidNm~~LveDp~~lapfl~~-- 415 (569)
T KOG1242|consen 351 ECLDSLGA---TTFVAEVDAPSLALMVPILKRGLAER----------STSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-- 415 (569)
T ss_pred HHHHhhcc---eeeeeeecchhHHHHHHHHHHHHhhc----------cchhhhhHHHHHHHHHHhhcCHHHHhhhHHH--
Confidence 34333322 234444321 2222333333332110 2233344555667776666 4568888887
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhh
Q 002697 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI 743 (891)
Q Consensus 664 l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~ 743 (891)
++|-+...+.+..+++|..+..++|.+.+..+..- ++...|.+...+.+.+ ...-|..++..++++....+.
T Consensus 416 Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~---f~d~~p~l~e~~~~~k---~~~~~~g~aq~l~evl~~~~v-- 487 (569)
T KOG1242|consen 416 LLPGLKENLDDAVPEVRAVAARALGALLERLGEVS---FDDLIPELSETLTSEK---SLVDRSGAAQDLSEVLAGLGV-- 487 (569)
T ss_pred HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc---ccccccHHHHhhccch---hhhhhHHHhhhHHHHHhcccc--
Confidence 99999999988899999999999999999988542 2777788887776664 334567777788877766553
Q ss_pred hhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccC
Q 002697 744 SPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSM 804 (891)
Q Consensus 744 ~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 804 (891)
.++..++..+..-...... ...+++..+..+.-+-...+....+|+.++++.+++.+.+
T Consensus 488 -~~~~~~~~~~~a~~~~~~~-~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad 546 (569)
T KOG1242|consen 488 -EKVEDILPEILANASSVLI-DERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLAD 546 (569)
T ss_pred -hHHHHHHHHHHHHHhhccc-hhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhh
Confidence 3444444444444333321 3456676666665555556666678999999999998874
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=3.7e-13 Score=136.61 Aligned_cols=410 Identities=15% Similarity=0.176 Sum_probs=292.2
Q ss_pred HHHHHHHHHHHHhc----CCC--hHHHHHHHhhcc--CCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhh
Q 002697 32 DKSQIWQQLQQYSQ----FPD--FNNYLAFILARA--EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG 103 (891)
Q Consensus 32 ~r~~a~~~L~~~~~----~p~--~~~~l~~il~~~--~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~ 103 (891)
.||+|-..+++.-+ +.+ -+..++..++.+ .+.+.+.|..+.+.+.-....--. -+....+.+...++..+.
T Consensus 16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~-~~~~Y~~~iv~Pv~~cf~ 94 (675)
T KOG0212|consen 16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGI-KDAGYLEKIVPPVLNCFS 94 (675)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcc-ccHHHHHHhhHHHHHhcc
Confidence 88888888876432 222 234444433322 133444454444444322111111 112245666677778889
Q ss_pred cCChHHHHHHHHHHHHHHhhc---ccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhh
Q 002697 104 AADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (891)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~---~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (891)
+++..||..+++.+.+|++.. ....+++++..+.....+++..+| ++...+..+.++....-.+. -.++.
T Consensus 95 D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVte~~~t------FsL~~ 167 (675)
T KOG0212|consen 95 DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVTESAST------FSLPE 167 (675)
T ss_pred CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhccccccc------cCHHH
Confidence 999999999999999888764 456789999999998888887666 56677777777665432211 24677
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh---hChhhhh
Q 002697 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE---VRPSFLE 257 (891)
Q Consensus 181 l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~---~~~~~~~ 257 (891)
++|.+-.-+...++..|...++-+..+-...+-.+..+++.++..++++++|++.++|..+-.++..+.. +.|..+
T Consensus 168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~- 246 (675)
T KOG0212|consen 168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM- 246 (675)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-
Confidence 8888888888889999999999988887766677889999999999999999999999877666655533 445443
Q ss_pred HhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCC
Q 002697 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (891)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~ 337 (891)
..+++++.+..-..++++.++..|+..+..++.. .+..+-++++.++..+++++..+++
T Consensus 247 -d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i--~g~~~l~~~s~il~~iLpc~s~~e~------------------ 305 (675)
T KOG0212|consen 247 -DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI--PGRDLLLYLSGILTAILPCLSDTEE------------------ 305 (675)
T ss_pred -CcccchhhccccccCCcHHHHHHHHHHHHHHhcC--CCcchhhhhhhhhhhcccCCCCCcc------------------
Confidence 3467778888888889999999998888777776 5667778888888888877774432
Q ss_pred CCCcccccccCCCCCCCCCCCccccccccHHHHHHHHH----HHHHHHcCc-c-hhhhhHHHHHHhhccCCCcchHHHHH
Q 002697 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL----DVLSNVFGD-E-ILPTLMPVIQAKLSASGDEAWKDREA 411 (891)
Q Consensus 338 ~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l----~~l~~~~~~-~-~~~~l~~~l~~~l~~~~~~~~~~r~a 411 (891)
.+.+.++...= ...+...++ + -+..++..+.+++.+.. ...|-+
T Consensus 306 ---------------------------~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~---~~tri~ 355 (675)
T KOG0212|consen 306 ---------------------------MSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDR---EETRIA 355 (675)
T ss_pred ---------------------------ccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcch---HHHHHH
Confidence 02344444333 333333333 2 24578899999999877 889999
Q ss_pred HHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCC
Q 002697 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (891)
Q Consensus 412 a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~ 491 (891)
++..+..+-...+..+..+.+.+++.+++.+.|++..|-..+...+..++..- ....+.+.+..+++.+...
T Consensus 356 ~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~--------~~~~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 356 VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS--------NSPNLRKFLLSLLEMFKED 427 (675)
T ss_pred HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc--------ccccHHHHHHHHHHHHhhh
Confidence 99999999988888889999999999999999999999998888888777522 2335677777888888776
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 002697 492 NKRVQEAACSAFATLEEE 509 (891)
Q Consensus 492 ~~~v~~~a~~al~~l~~~ 509 (891)
..-++.++..-+..+|.-
T Consensus 428 ~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 428 TKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred hHHHHhhhhHHHHHHHHH
Confidence 666777777666666654
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.67 E-value=3.8e-12 Score=144.32 Aligned_cols=508 Identities=17% Similarity=0.164 Sum_probs=317.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-cCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHH
Q 002697 15 NEICRLLEQQISPSSTADKSQIWQQLQQYS-QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (891)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~-~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~ 93 (891)
+++.+++.... .+.. .|+.+-..|-.+. ...+.-....+++..-.+.+...|.++.+.+..... -+++..-.
T Consensus 7 ~el~~~~~~~~-~~~~-~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~-----~~~~~~~l 79 (526)
T PF01602_consen 7 QELAKILNSFK-IDIS-KKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLH-----EDPELLIL 79 (526)
T ss_dssp HHHHHHHHCSS-THHH-HHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTT-----TSHHHHHH
T ss_pred HHHHHHHhcCC-CCHH-HHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-----cchhHHHH
Confidence 45666665544 3555 7777777765543 222322223333322236789999999888754433 24455556
Q ss_pred HHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCC
Q 002697 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (891)
Q Consensus 94 i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (891)
+.+.+.+-|.++++.+|..+-.+++.+.. +.-.+.+.+.+.+++.++++.+|..|+.++..+.+..++..
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~------- 149 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV------- 149 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH-------
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH-------
Confidence 67778888889999999998888888773 45678899999999999999999999999999998766543
Q ss_pred CCcchhh-hHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 002697 174 AECPINI-FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (891)
Q Consensus 174 ~~~~~~~-l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~ 252 (891)
+. +++.+.+.+.++++.|+.+|+.++..+ ...++.....++.+.+.+.+.+.++++..+..+++.+..++...
T Consensus 150 -----~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 150 -----EDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp -----HGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS
T ss_pred -----HHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC
Confidence 33 789999999999999999999999998 33333333445666777777777888888888888887666554
Q ss_pred hhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCC
Q 002697 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESL 332 (891)
Q Consensus 253 ~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~ 332 (891)
+..... ..+++.+...+.+.+..|..++..++..+...
T Consensus 224 ~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---------------------------------------- 261 (526)
T PF01602_consen 224 PEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---------------------------------------- 261 (526)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----------------------------------------
T ss_pred hhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc----------------------------------------
Confidence 443311 23333333333344444544444444322211
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHH
Q 002697 333 PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAA 412 (891)
Q Consensus 333 ~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa 412 (891)
...+..+++.+..++.+.+ +..|..+
T Consensus 262 ---------------------------------------------------~~~~~~~~~~L~~lL~s~~---~nvr~~~ 287 (526)
T PF01602_consen 262 ---------------------------------------------------PELLQKAINPLIKLLSSSD---PNVRYIA 287 (526)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHTSSS---HHHHHHH
T ss_pred ---------------------------------------------------hHHHHhhHHHHHHHhhccc---chhehhH
Confidence 0123345556666777777 8889999
Q ss_pred HHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCC-
Q 002697 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT- 491 (891)
Q Consensus 413 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~- 491 (891)
+.++..++...+..+. +.... +.....++++.+|..++..+..++. ......+++.+.+.+.+.
T Consensus 288 L~~L~~l~~~~~~~v~-~~~~~---~~~l~~~~d~~Ir~~~l~lL~~l~~-----------~~n~~~Il~eL~~~l~~~~ 352 (526)
T PF01602_consen 288 LDSLSQLAQSNPPAVF-NQSLI---LFFLLYDDDPSIRKKALDLLYKLAN-----------ESNVKEILDELLKYLSELS 352 (526)
T ss_dssp HHHHHHHCCHCHHHHG-THHHH---HHHHHCSSSHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhcccchhhh-hhhhh---hheecCCCChhHHHHHHHHHhhccc-----------ccchhhHHHHHHHHHHhcc
Confidence 8888888775533333 11111 2222347888999999998888775 445667888888888543
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHH
Q 002697 492 NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (891)
Q Consensus 492 ~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~ 571 (891)
+..++..++.+++.++.........|++ .+++.+..........+...+..++...+ ..-..++..+.+.
T Consensus 353 d~~~~~~~i~~I~~la~~~~~~~~~~v~----~l~~ll~~~~~~~~~~~~~~i~~ll~~~~------~~~~~~l~~L~~~ 422 (526)
T PF01602_consen 353 DPDFRRELIKAIGDLAEKFPPDAEWYVD----TLLKLLEISGDYVSNEIINVIRDLLSNNP------ELREKILKKLIEL 422 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHGSSHHHHHH----HHHHHHHCTGGGCHCHHHHHHHHHHHHST------TTHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhccCchHHHHHH----HHHHhhhhccccccchHHHHHHHHhhcCh------hhhHHHHHHHHHH
Confidence 6789999999999999887555555554 44556655545555455555666655432 2223456666666
Q ss_pred HHcCCCCCcch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHH
Q 002697 572 WQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEG 650 (891)
Q Consensus 572 l~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~ 650 (891)
+.+. .++.+ ..++.++|..+...+. ....+.++..+.+.+. .+ +..++..++.++..+...
T Consensus 423 l~~~--~~~~~~~~~~wilGEy~~~~~~--~~~~~~~~~~l~~~~~-------------~~-~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 423 LEDI--SSPEALAAAIWILGEYGELIEN--TESAPDILRSLIENFI-------------EE-SPEVKLQILTALAKLFKR 484 (526)
T ss_dssp HTSS--SSHHHHHHHHHHHHHHCHHHTT--TTHHHHHHHHHHHHHT-------------TS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHh--hHHHHHHHHHhhhcccCCcccc--cccHHHHHHHHHHhhc-------------cc-cHHHHHHHHHHHHHHHhh
Confidence 6653 23333 5566666665554443 0134444444433322 11 345565666666555554
Q ss_pred Hhhh-HHhhhccchHHHHHHHHhc--CCChHHHHHHHHHHhH
Q 002697 651 LGSG-IESLVAQSNLRDMLLQCCM--DDASDVRQSAFALLGD 689 (891)
Q Consensus 651 ~~~~-~~~~~~~~~l~~~l~~~~~--~~~~~vr~~a~~~l~~ 689 (891)
.+.. .. +.+.+.+..+.+ +.+.+||+.|...+.-
T Consensus 485 ~~~~~~~-----~~i~~~~~~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 485 NPENEVQ-----NEILQFLLSLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp SCSTTHH-----HHHHHHHHCHHHHS-SSHHHHHHHHHHHHH
T ss_pred CCchhhH-----HHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 3321 11 136666776666 7799999999875543
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=99.66 E-value=7.2e-12 Score=140.23 Aligned_cols=425 Identities=13% Similarity=0.075 Sum_probs=259.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhc-CCChH-HHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHH
Q 002697 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFN-NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (891)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~~-~p~~~-~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i 94 (891)
+..+++.+.++|-+ .||-+.-++..+.+ +|+.. ..+-.+..+..+.++.+|-+|.-.|-+ -..++..+.+
T Consensus 70 F~dVvk~~~S~d~e-lKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~-------Ir~~~i~e~l 141 (746)
T PTZ00429 70 FVDVVKLAPSTDLE-LKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMC-------IRVSSVLEYT 141 (746)
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc-------CCcHHHHHHH
Confidence 44455555667767 88888888888765 77743 333334333346678888888655421 1234556677
Q ss_pred HHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCc-hHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCC
Q 002697 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG-WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (891)
Q Consensus 95 ~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~-w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (891)
...+.+++.|+++.||++++.++.++.+..+.-. -.++++.|.+++.+.++.+..+|+.+|..+.+..+..+.
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~------ 215 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE------ 215 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH------
Confidence 7778888899999999999999999988764321 124566777778889999999999999888775443221
Q ss_pred CCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC-
Q 002697 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR- 252 (891)
Q Consensus 174 ~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~- 252 (891)
.....+..++..+.+-++..+...++++..+.... ......++..+...+++.++.|.-.+++++..+....
T Consensus 216 ---l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~----~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~ 288 (746)
T PTZ00429 216 ---SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD----KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS 288 (746)
T ss_pred ---HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC----cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC
Confidence 12444566666676667777777888776543221 1223456777777788888888888888888776543
Q ss_pred hhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhH--------------HHHHhhccCCh
Q 002697 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLV--------------PVLLSNMIYAD 318 (891)
Q Consensus 253 ~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li--------------~~ll~~l~~~~ 318 (891)
++.+...+..+...++.. .+++++++..++.-+..+... .+..+.+++..++ .++..... +
T Consensus 289 ~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~--~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lan--e 363 (746)
T PTZ00429 289 QELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVI--FPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVT--P 363 (746)
T ss_pred HHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHH--CHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcC--c
Confidence 333333333444444444 345677888888777766654 3334433322211 11111000 0
Q ss_pred hhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhh
Q 002697 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKL 398 (891)
Q Consensus 319 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l 398 (891)
+..+.. ++....+ .. +. +-.+++.+..+++.++..++. ....++..+.+++
T Consensus 364 ~Nv~~I--------------L~EL~eY--------a~-d~-----D~ef~r~aIrAIg~lA~k~~~-~a~~cV~~Ll~ll 414 (746)
T PTZ00429 364 SVAPEI--------------LKELAEY--------AS-GV-----DMVFVVEVVRAIASLAIKVDS-VAPDCANLLLQIV 414 (746)
T ss_pred ccHHHH--------------HHHHHHH--------hh-cC-----CHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHh
Confidence 000000 0000000 00 00 113788888999998877754 5667888888877
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhc---CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchh
Q 002697 399 SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL---DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE 475 (891)
Q Consensus 399 ~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 475 (891)
.+.. -... .++.++..+....++.. +++.++..+ .=.++..|.+.+|.+|++++.+..
T Consensus 415 ~~~~---~~v~-e~i~vik~IlrkyP~~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--------- 475 (746)
T PTZ00429 415 DRRP---ELLP-QVVTAAKDIVRKYPELL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--------- 475 (746)
T ss_pred cCCc---hhHH-HHHHHHHHHHHHCccHH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---------
Confidence 6543 2222 35566666655444321 344444332 125678999999999999986642
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchH
Q 002697 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (891)
Q Consensus 476 ~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~ 516 (891)
...++..++..+.+.+..||.....+..++.-..++...+
T Consensus 476 -a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~ 515 (746)
T PTZ00429 476 -GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEP 515 (746)
T ss_pred -HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 2356666667777778899999998888887765544433
No 37
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.4e-12 Score=130.85 Aligned_cols=409 Identities=13% Similarity=0.125 Sum_probs=303.4
Q ss_pred hHhhhhhcCChHHHHHHHHHHHHHHhhcc-cCch---HHHHHHHH-HHhccCChhHHhHHHHHHHHHHhhchhccccCCC
Q 002697 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGG-IAGW---LELLQALV-TCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (891)
Q Consensus 97 ~ll~~L~~~~~~vr~~~a~~l~~i~~~~~-~~~w---~~ll~~L~-~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (891)
.+.++|+|.-.+-|+++|.-+-.+.+... .+.. .+++..|. ....+++...|.|++..+....-..+..-.
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~---- 79 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA---- 79 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH----
Confidence 45678888888889999999999998652 2332 34555333 345567777888998888776555443211
Q ss_pred CCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002697 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (891)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~ 251 (891)
.++..++|.++..+.+++..+|..|++.+.++......++..+++.+...++++..|++..+|. +.+.+..+...
T Consensus 80 ----~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikd 154 (675)
T KOG0212|consen 80 ----GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKD 154 (675)
T ss_pred ----HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHH
Confidence 2568899999999999999999999999999998887788888999999999998888877765 34455444332
Q ss_pred ----ChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhc
Q 002697 252 ----RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE 327 (891)
Q Consensus 252 ----~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~ 327 (891)
.... -+++.+++.+..-+...++.+|...++.+..+-..| .-.+-.|++.+++.+++++....+
T Consensus 155 IVte~~~t--FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~s~-------- 222 (675)
T KOG0212|consen 155 IVTESAST--FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDSSD-------- 222 (675)
T ss_pred hccccccc--cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCCcH--------
Confidence 2212 247788888888777778888887777666665543 233457889999988887763322
Q ss_pred ccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHc---Ccc-hhhhhHHHHHHhhccCCC
Q 002697 328 EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF---GDE-ILPTLMPVIQAKLSASGD 403 (891)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~---~~~-~~~~l~~~l~~~l~~~~~ 403 (891)
.+|..+..+++.+-..+ |.. -.+.+++.+...+.+++
T Consensus 223 --------------------------------------eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~- 263 (675)
T KOG0212|consen 223 --------------------------------------EVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSE- 263 (675)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCc-
Confidence 26767777776665554 222 24567778888888888
Q ss_pred cchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCCh-HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHH
Q 002697 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP-LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (891)
Q Consensus 404 ~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 482 (891)
+..+..|+..+..+..-.++.+-++++.++..+++++.|..+ .++..+...-+.+...+...... ..--+..++.
T Consensus 264 --~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~--~~id~~~ii~ 339 (675)
T KOG0212|consen 264 --PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLK--EEIDYGSIIE 339 (675)
T ss_pred --HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhc--cccchHHHHH
Confidence 999999999999999888888889999999999999998877 47777766665555554322111 1133568999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhh
Q 002697 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLD 562 (891)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~ 562 (891)
.+.+.+.+.....|.++...+..+....+..+..|.+++++.|++.|.+.++.+...+++.++.++..-.. +.+.
T Consensus 340 vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~-----~~~~ 414 (675)
T KOG0212|consen 340 VLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS-----PNLR 414 (675)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc-----ccHH
Confidence 99999999889999999999999999999999999999999999999999999988888888888765432 2334
Q ss_pred hhhHHHHHHHHc
Q 002697 563 ILMPPLIAKWQQ 574 (891)
Q Consensus 563 ~l~~~l~~~l~~ 574 (891)
+++..+++.+..
T Consensus 415 ~fl~sLL~~f~e 426 (675)
T KOG0212|consen 415 KFLLSLLEMFKE 426 (675)
T ss_pred HHHHHHHHHHhh
Confidence 455556666654
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.66 E-value=6e-11 Score=132.92 Aligned_cols=431 Identities=11% Similarity=0.058 Sum_probs=278.7
Q ss_pred HhcCCCCHHHHHHHHHHHHHHh-cCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhh
Q 002697 23 QQISPSSTADKSQIWQQLQQYS-QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPC 101 (891)
Q Consensus 23 ~~~s~d~~~~r~~a~~~L~~~~-~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~ 101 (891)
.+.+.+.. .|+.|-+.+-.+. ..-+.......++..-.+.+.+.|.+..+++.+.. ...++..-...+.+.+-
T Consensus 40 ~L~s~~~~-~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya-----~~~pelalLaINtl~KD 113 (746)
T PTZ00429 40 DLNGTDSY-RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTA-----RLQPEKALLAVNTFLQD 113 (746)
T ss_pred HHHCCCHH-HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----ccChHHHHHHHHHHHHH
Confidence 33456666 7788887776543 33344334444433233678999999999987663 23444444556777788
Q ss_pred hhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhh
Q 002697 102 LGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (891)
Q Consensus 102 L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l 181 (891)
+.++++.+|-.+-..++. ...+...+.+++.+.+++.+.++.+|..|+.++..+....++.... ..+
T Consensus 114 l~d~Np~IRaLALRtLs~---Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~----------~~~ 180 (746)
T PTZ00429 114 TTNSSPVVRALAVRTMMC---IRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ----------QDF 180 (746)
T ss_pred cCCCCHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc----------cch
Confidence 889999999886555554 4345567788899999999999999999999999998765543211 346
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHH
Q 002697 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (891)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~ 261 (891)
.+.+.+++.+.++.|...|+.+|..+....|..+ ......+..++..+.+-++..+..++++|... .|.. .....
T Consensus 181 ~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y---~P~~-~~e~~ 255 (746)
T PTZ00429 181 KKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ---RPSD-KESAE 255 (746)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc---CCCC-cHHHH
Confidence 7888888999999999999999999987665443 33344456666666665666666666666442 2321 12235
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCc
Q 002697 262 NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKP 341 (891)
Q Consensus 262 ~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~ 341 (891)
.++..+...+++.+..|...|+.++..+.... ....+...+..+.+.++.... ++
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~rl~~pLv~L~s-s~----------------------- 310 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIERCTVRVNTALLTLSR-RD----------------------- 310 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHHHHHhhC-CC-----------------------
Confidence 67777777788888999999999888776541 122333333333333322211 00
Q ss_pred ccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhh
Q 002697 342 RFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (891)
Q Consensus 342 ~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~ 421 (891)
-.+|-.+...+..+....+.-+.+. +..+.-..+++ ..+|...+..|..++.
T Consensus 311 -----------------------~eiqyvaLr~I~~i~~~~P~lf~~~-~~~Ff~~~~Dp----~yIK~~KLeIL~~Lan 362 (746)
T PTZ00429 311 -----------------------AETQYIVCKNIHALLVIFPNLLRTN-LDSFYVRYSDP----PFVKLEKLRLLLKLVT 362 (746)
T ss_pred -----------------------ccHHHHHHHHHHHHHHHCHHHHHHH-HHhhhcccCCc----HHHHHHHHHHHHHHcC
Confidence 1267778888877777665433222 22221222332 4578888888887765
Q ss_pred cchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 002697 422 GCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACS 501 (891)
Q Consensus 422 ~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~ 501 (891)
. ..+..|+.-+.....+.+..++..+..++|+++..++ .....++..++..+.+... +...++.
T Consensus 363 e------~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~---------~~a~~cV~~Ll~ll~~~~~-~v~e~i~ 426 (746)
T PTZ00429 363 P------SVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD---------SVAPDCANLLLQIVDRRPE-LLPQVVT 426 (746)
T ss_pred c------ccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh---------HHHHHHHHHHHHHhcCCch-hHHHHHH
Confidence 2 3445566767777778888999999999999987543 4456777778777766443 3345777
Q ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHH--ccc-chhHHHHHHHHHHHHHHHhc
Q 002697 502 AFATLEEEAAEELAPRLEIILQHLMMAF--GKY-QRRNLRIVYDAIGTLADAVG 552 (891)
Q Consensus 502 al~~l~~~~~~~~~~~l~~il~~l~~~l--~~~-~~~~~~~~~~al~~l~~~~~ 552 (891)
.+..++...+.. + ++..++..+ ... +...+...++.+|.++...+
T Consensus 427 vik~IlrkyP~~---~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~ 474 (746)
T PTZ00429 427 AAKDIVRKYPEL---L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE 474 (746)
T ss_pred HHHHHHHHCccH---H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh
Confidence 788887765432 1 344444433 222 23455566888888776543
No 39
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.63 E-value=4.2e-14 Score=145.85 Aligned_cols=274 Identities=19% Similarity=0.281 Sum_probs=189.7
Q ss_pred HHHHHHHHHHhc-ccchhhHHhHHHHHHHHHHhhC---------CCC-----HHHHHHHHHHHHHHHhhChhhhhHhHHH
Q 002697 198 KLSLGSVNQFIM-LMPSALFVSMDQYLQGLFLLSN---------DPS-----AEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (891)
Q Consensus 198 ~~al~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~---------~~~-----~~v~~~~~~~l~~l~~~~~~~~~~~l~~ 262 (891)
...++++..+.. .+|+.+..++..+|..+...+. +++ +.++..+|+.+....+.+.+.+.++++.
T Consensus 58 ~lilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~ 137 (370)
T PF08506_consen 58 KLILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPT 137 (370)
T ss_dssp HHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666665543 3677788888888776665432 111 3578889999999999999999999999
Q ss_pred HHHHHHhhcCC-----CCHHHHHHHHHHHHHhhccCCchhh--HHhhhhhhHHHH-HhhccCChhhhhhhhhcccCCCCC
Q 002697 263 LFEYMLQVNKD-----TDDDVALEACEFWHSYFEAQLPHEN--LKEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPD 334 (891)
Q Consensus 263 l~~~~~~~~~~-----~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~l~~li~~l-l~~l~~~~~d~~~~~~~~~~~~~~ 334 (891)
++..+++.+.. ..+.+...++.|+..+++....... .+++++.++..+ ++.|..+++|+|.|++||.|
T Consensus 138 fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~E---- 213 (370)
T PF08506_consen 138 FVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEE---- 213 (370)
T ss_dssp HHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHH----
T ss_pred HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHH----
Confidence 99888877532 2455777899999998876322222 267889998855 59999999999999998863
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhcc---CCCcchHHHHH
Q 002697 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA---SGDEAWKDREA 411 (891)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~r~a 411 (891)
|||.. .|.. +..+.|.+|..++..+++.+++.+.+.+...+..+++. ....+|+.+.+
T Consensus 214 ---YIrrd-----------~e~s-----d~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~ 274 (370)
T PF08506_consen 214 ---YIRRD-----------LEGS-----DSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDG 274 (370)
T ss_dssp ---HHHHH-----------SCSS--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHH
T ss_pred ---HHHhh-----------cccc-----ccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHH
Confidence 55522 1111 12368999999999999999888887777777777761 11234999999
Q ss_pred HHHHHHHHhhcchh------------hhhhhHHH-HHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHH
Q 002697 412 AVLALGAIAEGCIK------------GLYPHLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE 478 (891)
Q Consensus 412 a~~~l~~l~~~~~~------------~~~~~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 478 (891)
|+..++.++..... .+..++.. ++|-+. .-.+.+|.+|..|++.+..|...++ .+.+.
T Consensus 275 Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--------~~~l~ 345 (370)
T PF08506_consen 275 ALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--------KEQLL 345 (370)
T ss_dssp HHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---------HHHHH
T ss_pred HHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--------HHHHH
Confidence 99999999865421 11222221 233333 2226789999999999998887653 56788
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH
Q 002697 479 KVLMGLLKRILDTNKRVQEAACSAF 503 (891)
Q Consensus 479 ~~l~~l~~~l~d~~~~v~~~a~~al 503 (891)
.+++.++..|.+++..|+..|+.|+
T Consensus 346 ~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 346 QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 9999999999999999999998875
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.61 E-value=1.4e-11 Score=139.63 Aligned_cols=471 Identities=16% Similarity=0.105 Sum_probs=313.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHh-hccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHH
Q 002697 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFIL-ARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (891)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~~-~p~~~~~l~~il-~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i 94 (891)
+.++++.+.+.|.. .|+-+.-++..+.. +|+......+-+ .+-.+.++.+|..|...+-+.. .++..+.+
T Consensus 44 ~~~vi~l~~s~~~~-~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l 115 (526)
T PF01602_consen 44 FMEVIKLISSKDLE-LKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPL 115 (526)
T ss_dssp HHHHHCTCSSSSHH-HHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHH
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHH
Confidence 34455555567777 99999999999765 677444444433 3224678899999987765432 66777888
Q ss_pred HHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHH-HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCC
Q 002697 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLE-LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (891)
Q Consensus 95 ~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~-ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (891)
...+.+.+.++++.||+.++.++..+.+..+. ..+. +++.+.+++.+.++.++.+|+.++..+ +.-+...
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~------- 186 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSY------- 186 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHH-------
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchh-------
Confidence 88899999999999999999999999998643 4344 789999999999999999999999888 2111110
Q ss_pred CCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCh
Q 002697 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (891)
Q Consensus 174 ~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~ 253 (891)
...++.++..+.+.+..+++.++..+++++..+....+..... ..+++.+...+.+.++.+.-.++.++..+....+
T Consensus 187 -~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~ 263 (526)
T PF01602_consen 187 -KSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE 263 (526)
T ss_dssp -TTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH
T ss_pred -hhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH
Confidence 0234666677777778899999999999999887664433311 3456666666666667777777777765543222
Q ss_pred hhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCC
Q 002697 254 SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLP 333 (891)
Q Consensus 254 ~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~ 333 (891)
.+..+++.+...+.+.+..++..+++.+..++.. .+..+ ...... +..+...
T Consensus 264 -----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~--~~~~v----~~~~~~-~~~l~~~---------------- 315 (526)
T PF01602_consen 264 -----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS--NPPAV----FNQSLI-LFFLLYD---------------- 315 (526)
T ss_dssp -----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH--CHHHH----GTHHHH-HHHHHCS----------------
T ss_pred -----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc--cchhh----hhhhhh-hheecCC----------------
Confidence 4567777888888889999999999999998776 22222 211111 1111100
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccC-CCcchHHHHHH
Q 002697 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSAS-GDEAWKDREAA 412 (891)
Q Consensus 334 ~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~r~aa 412 (891)
+| -.+|..+...+..++.. ..+..+++.+..++.+. + ...|..+
T Consensus 316 -----------------------~d------~~Ir~~~l~lL~~l~~~---~n~~~Il~eL~~~l~~~~d---~~~~~~~ 360 (526)
T PF01602_consen 316 -----------------------DD------PSIRKKALDLLYKLANE---SNVKEILDELLKYLSELSD---PDFRREL 360 (526)
T ss_dssp -----------------------SS------HHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHC-----HHHHHHH
T ss_pred -----------------------CC------hhHHHHHHHHHhhcccc---cchhhHHHHHHHHHHhccc---hhhhhhH
Confidence 10 13788888877766654 34445677777777443 6 7899999
Q ss_pred HHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcC-C
Q 002697 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-T 491 (891)
Q Consensus 413 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~ 491 (891)
+..++.++..... .....++.+++.+...+..+...+...+.++.... +.....++..++..+.+ .
T Consensus 361 i~~I~~la~~~~~----~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~---------~~~~~~~l~~L~~~l~~~~ 427 (526)
T PF01602_consen 361 IKAIGDLAEKFPP----DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN---------PELREKILKKLIELLEDIS 427 (526)
T ss_dssp HHHHHHHHHHHGS----SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS---------TTTHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhccCc----hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcC---------hhhhHHHHHHHHHHHHHhh
Confidence 9999999986644 33445666666666677777777767776665532 22235567777777775 4
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHH
Q 002697 492 NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (891)
Q Consensus 492 ~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~ 571 (891)
++.++..++|.++.+.+...+ .. ....++..+.+.+......++..++.++..+....+.. ...+.+.+.+.+.
T Consensus 428 ~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~----~~~~~i~~~~~~~ 501 (526)
T PF01602_consen 428 SPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN----EVQNEILQFLLSL 501 (526)
T ss_dssp SHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST----THHHHHHHHHHCH
T ss_pred HHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch----hhHHHHHHHHHHH
Confidence 678899999999999887755 22 55666666677776666677778888888887665532 2233444444444
Q ss_pred HHcCCCCCcch-HhHHHHHH
Q 002697 572 WQQLPNSDKDL-FPLLECFT 590 (891)
Q Consensus 572 l~~~~~~~~~~-~~~~~~l~ 590 (891)
.... ..+.++ ..+.+.+.
T Consensus 502 ~~~~-s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 502 ATED-SSDPEVRDRAREYLR 520 (526)
T ss_dssp HHHS--SSHHHHHHHHHHHH
T ss_pred hccC-CCCHHHHHHHHHHHH
Confidence 3311 134444 44544443
No 41
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2e-13 Score=141.38 Aligned_cols=321 Identities=17% Similarity=0.171 Sum_probs=223.1
Q ss_pred hhhHHHHHHhhcc-CCCcchHHHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHh
Q 002697 388 PTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (891)
Q Consensus 388 ~~l~~~l~~~l~~-~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 465 (891)
..++|.+.+.+.. .+ +..+..|.++|..|+.+..+.-....+ ..+|.++.++.+++..|+..|.|+||+++..-+
T Consensus 108 ~G~v~~lV~~l~~~~~---~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~ 184 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDN---PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSP 184 (514)
T ss_pred cCcHHHHHHHHccCCC---hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCCh
Confidence 3567777777764 44 889999999999999988766544443 378889999999999999999999999987544
Q ss_pred hhhCCCcchhh--HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHh-cccchHhHHHHHHHHHHHHcccchhHHHHHH
Q 002697 466 QDIGHQNGREQ--FEKVLMGLLKRILDTNK-RVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVY 541 (891)
Q Consensus 466 ~~~~~~~~~~~--~~~~l~~l~~~l~d~~~-~v~~~a~~al~~l~~~~-~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~ 541 (891)
.. ..+ -..++..++..+..+.+ .....+.|+|.+++... +..-...+..+++.|...+...+..++.-++
T Consensus 185 ~~------Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~ 258 (514)
T KOG0166|consen 185 DC------RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDAC 258 (514)
T ss_pred HH------HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 32 222 23467777777776554 56778999999999876 3333345778999999999999999998899
Q ss_pred HHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH
Q 002697 542 DAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLA 621 (891)
Q Consensus 542 ~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 621 (891)
.+++.+.....+... --.-..++|.++..+.+..
T Consensus 259 WAlsyLsdg~ne~iq-~vi~~gvv~~LV~lL~~~~--------------------------------------------- 292 (514)
T KOG0166|consen 259 WALSYLTDGSNEKIQ-MVIDAGVVPRLVDLLGHSS--------------------------------------------- 292 (514)
T ss_pred HHHHHHhcCChHHHH-HHHHccchHHHHHHHcCCC---------------------------------------------
Confidence 999888765443322 0111234445555444421
Q ss_pred hhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhc-CCChHHHHHHHHHHhHHHHhchHhhHH
Q 002697 622 KVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM-DDASDVRQSAFALLGDLARVCPVHLQA 700 (891)
Q Consensus 622 ~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~ 700 (891)
..++.-++.++|.++.+.+....-.+.. ..+|.+...+. ++...+|+.|+.+++.|..+...++..
T Consensus 293 ------------~~v~~PaLRaiGNIvtG~d~QTq~vi~~-~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqa 359 (514)
T KOG0166|consen 293 ------------PKVVTPALRAIGNIVTGSDEQTQVVINS-GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQA 359 (514)
T ss_pred ------------cccccHHHhhccceeeccHHHHHHHHhc-ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHH
Confidence 1122223333444444333333333332 35666666666 455669999999999999988777766
Q ss_pred hHH-HHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhHHH--HHHHHHHHHhcCChhhhhhHHHhHHHHHh
Q 002697 701 RLS-DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVM--TVVLCLVPILKHSEELNKSLIENSAITLG 777 (891)
Q Consensus 701 ~~~-~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~--~il~~l~~~l~~~~~~~~~~~~~~~~~l~ 777 (891)
.++ .++|.++..++.. ....|..|+|+++.+...+..+-..|+- .+++.+..+|...+ ..+...+..++.
T Consensus 360 Vida~l~p~Li~~l~~~----ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D---~~ii~v~Ld~l~ 432 (514)
T KOG0166|consen 360 VIDANLIPVLINLLQTA----EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPD---VKIILVALDGLE 432 (514)
T ss_pred HHHcccHHHHHHHHhcc----chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCC---hHHHHHHHHHHH
Confidence 654 7999999999988 6789999999999998776655555543 36777777775554 455677777887
Q ss_pred hhhhhc
Q 002697 778 RLAWVC 783 (891)
Q Consensus 778 ~l~~~~ 783 (891)
.+....
T Consensus 433 nil~~~ 438 (514)
T KOG0166|consen 433 NILKVG 438 (514)
T ss_pred HHHHHH
Confidence 777643
No 42
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.4e-08 Score=113.69 Aligned_cols=693 Identities=14% Similarity=0.144 Sum_probs=359.1
Q ss_pred CCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCChH------------HHHHHHhhccCCCCHHHHHH-HH
Q 002697 6 AWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFN------------NYLAFILARAEGKSVEIRQA-AG 72 (891)
Q Consensus 6 ~~~p~~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~------------~~l~~il~~~~~~~~~~R~~-a~ 72 (891)
+|+ .....+.+.+++.-+.++.+. +|++|...+.....+|.+. ..++..+..--......--+ ..
T Consensus 130 aW~-~~~t~~~~~~il~~~~h~~pk-vRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L 207 (1176)
T KOG1248|consen 130 AWS-YSSTKTELFGILAFAAHKKPK-VRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSL 207 (1176)
T ss_pred hhc-cccHHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 576 555667788888888888888 9999999999876655432 12222222100101111111 11
Q ss_pred HHHHHhHHhhhccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHh----ccC-Ch--
Q 002697 73 LLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL----DSN-DI-- 145 (891)
Q Consensus 73 ~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l----~~~-~~-- 145 (891)
.+|| ......+....+.+-+.++..+...+..++..+-+++..+++..+...-.++...++..+ -+. ++
T Consensus 208 ~Ll~----~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~ 283 (1176)
T KOG1248|consen 208 MLLR----DVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLL 283 (1176)
T ss_pred HHHH----HhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHH
Confidence 1222 223334566667777888888888999999999999999998875533233333333333 232 22
Q ss_pred -----hHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHH
Q 002697 146 -----NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD 220 (891)
Q Consensus 146 -----~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 220 (891)
.+...+..+|...=.+.. -..++.+++.++.++.+..+++...|-+++..+...... ..+...
T Consensus 284 t~~W~~v~~~~~~~la~~q~~~~-----------~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c 351 (1176)
T KOG1248|consen 284 TVAWLKVLNEAHDILATLQEEKA-----------LQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALC 351 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHH-----------HHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHH
Confidence 122233333322211111 123577788888888888999999999999888765432 111111
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHH-------HHH-----HHHHH
Q 002697 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVAL-------EAC-----EFWHS 288 (891)
Q Consensus 221 ~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~-------~a~-----~~l~~ 288 (891)
.. .+..+++-.-..+...+++.+..+.+.+++...+++...++.+...-.+++..-+. .|+ +.+.+
T Consensus 352 ~~--~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~ 429 (1176)
T KOG1248|consen 352 SK--QLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLT 429 (1176)
T ss_pred HH--HHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHH
Confidence 10 12233333334556667777777777777777776665555443322221111000 001 11111
Q ss_pred hhcc---------------CCc-----hhhHHhhhhhhHHHHHhhc----cCChhh--h--------hhhhhcccCCCCC
Q 002697 289 YFEA---------------QLP-----HENLKEFLPRLVPVLLSNM----IYADDD--E--------SLVEAEEDESLPD 334 (891)
Q Consensus 289 l~~~---------------~~~-----~~~~~~~l~~li~~ll~~l----~~~~~d--~--------~~~~~~~~~~~~~ 334 (891)
+.-- |.. ...+.-|...++|...... ...+.. . +.|.
T Consensus 430 ~lpLnl~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~--------- 500 (1176)
T KOG1248|consen 430 ILPLNLHAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWS--------- 500 (1176)
T ss_pred HcchhccccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHH---------
Confidence 1000 000 0001112223333221111 100000 0 1121
Q ss_pred CCCCCCcccccccCCCCCCCCCCCc----cccccccHHHHHHHHHHHHHHHc---Cc-----ch----hhhhHHHHHHhh
Q 002697 335 RDQDLKPRFHSSRLHGSENPEDDDD----DIVNVWNLRKCSAAALDVLSNVF---GD-----EI----LPTLMPVIQAKL 398 (891)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~d~----d~~~~~~~r~~a~~~l~~l~~~~---~~-----~~----~~~l~~~l~~~l 398 (891)
+-|.|+..-..-...+-+..- --...-..|...+..|..+.... .+ .+ -...+|.+.++.
T Consensus 501 ----LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~y 576 (1176)
T KOG1248|consen 501 ----LLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVY 576 (1176)
T ss_pred ----hChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHh
Confidence 122222211100000000000 00000125667777777766664 10 11 123445444444
Q ss_pred ccCCC---cchHHHHHHHHHHH-HHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHH-HHHHHHHhhHHHHhhhhCCCcc
Q 002697 399 SASGD---EAWKDREAAVLALG-AIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRS-ISCWTLSRFSKFIVQDIGHQNG 473 (891)
Q Consensus 399 ~~~~~---~~~~~r~aa~~~l~-~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~-~a~~~l~~~~~~~~~~~~~~~~ 473 (891)
.+... .....|..-+..+. ...+.++..+...+ ...+-....+.+..++. .....|..++...+ ...
T Consensus 577 tq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l---~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~-----~~~ 648 (1176)
T KOG1248|consen 577 TQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSL---KDSAGELASDLDESVASFKTLSLLDLLIALAP-----VQT 648 (1176)
T ss_pred cCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHH---HHHHHhHhccchhhhhhHHHHHHHHHHHhhhc-----ccc
Confidence 43220 11233333333222 22222222222111 11222222232222221 12222222221111 112
Q ss_pred hhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH--hcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHH
Q 002697 474 REQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEE--AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (891)
Q Consensus 474 ~~~~~~~l~~l~~~l~-d~~~~v~~~a~~al~~l~~~--~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~ 550 (891)
......++ .+..... ..+..+|..+...|..++.. +......++..|.+.+.+.++......+...+.|+..+.+.
T Consensus 649 e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~ 727 (1176)
T KOG1248|consen 649 ESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKL 727 (1176)
T ss_pred chhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 23333333 2333333 33688999999999988876 33445678888999999999888888888999999999998
Q ss_pred hcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHH---HHhccccccchHHHHHHHHHHHHHHHHHhhcCcc
Q 002697 551 VGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIA---QALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVA 627 (891)
Q Consensus 551 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~---~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~ 627 (891)
.+.... .+....+|-++-.++.. +........+|+-.++ ..+..+-.| .+..++..+.++.....
T Consensus 728 ~~~e~~--~~i~k~I~EvIL~~Ke~--n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~Isagl~------- 795 (1176)
T KOG1248|consen 728 LSAEHC--DLIPKLIPEVILSLKEV--NVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSIISAGLV------- 795 (1176)
T ss_pred ccHHHH--HHHHHHHHHHHHhcccc--cHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHHHhhhc-------
Confidence 874443 45555555443333221 1222244555555544 332223233 23344444444432210
Q ss_pred cCCCCchhHHHHHhhhHHHHHHHHhhhH-HhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchH-hhHHhHHHH
Q 002697 628 AGAQYDKEFVVCCLDLLSGLAEGLGSGI-ESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV-HLQARLSDF 705 (891)
Q Consensus 628 ~~~e~d~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~i 705 (891)
++ ....+.+.+-+++.++.-++... .+++++ ++..+..++.....+++.+|++++..++..++. .+.++++.+
T Consensus 796 -gd--~~~~~as~Ivai~~il~e~~~~ld~~~l~~--li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~L 870 (1176)
T KOG1248|consen 796 -GD--STRVVASDIVAITHILQEFKNILDDETLEK--LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEEL 870 (1176)
T ss_pred -cc--HHHHHHHHHHHHHHHHHHHhccccHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHH
Confidence 00 22223333555666666555443 244444 788888888999999999999999999999985 578999999
Q ss_pred HHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhch-hhhhhHHHHHHHHHHHHhcCC
Q 002697 706 LDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLCLVPILKHS 761 (891)
Q Consensus 706 ~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-~~~~~~~~~il~~l~~~l~~~ 761 (891)
+|.++..+.+. ...+|..+-..+..++...| +.+.+|++.....+++.+...
T Consensus 871 L~sll~ls~d~----k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK~ 923 (1176)
T KOG1248|consen 871 LPSLLALSHDH----KIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRKR 923 (1176)
T ss_pred HHHHHHHHHhh----hHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHHH
Confidence 99999977765 56888888889999998887 457778887777777766544
No 43
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.55 E-value=2.6e-08 Score=107.85 Aligned_cols=688 Identities=13% Similarity=0.099 Sum_probs=357.3
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhcC--ChHHHHHHHHHHHHHHhhcccCch--
Q 002697 54 AFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLGGIAGW-- 129 (891)
Q Consensus 54 ~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~--~~~vr~~~a~~l~~i~~~~~~~~w-- 129 (891)
+..|...-+.++++|..|...|| .|+. ++ .....|-....+. +-..|+.+...+.....+.|....
T Consensus 7 i~~L~~~ls~d~~vr~~AE~~l~-----qle~-~~----~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~ 76 (1005)
T KOG2274|consen 7 IELLSGSLSADQNVRSQAETQLK-----QLEL-TE----GFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEA 76 (1005)
T ss_pred HHHHHhhcCCChhHHHHHHHHHh-----cccc-ch----HHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhh
Confidence 33343333678999999998884 3442 22 2445555544433 445677777666665554321110
Q ss_pred -----------HH-HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHH
Q 002697 130 -----------LE-LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLR 197 (891)
Q Consensus 130 -----------~~-ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr 197 (891)
.. +...|.+.+.+++...|.++..++..++.... | ..+++++|.+++.+.+.+..--
T Consensus 77 fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~-------P----d~WpElv~~i~~~l~~~n~n~i 145 (1005)
T KOG2274|consen 77 FRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDY-------P----DEWPELVPFILKLLSSGNENSI 145 (1005)
T ss_pred ccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccC-------c----hhhHHHHHHHHHHHhccchhhh
Confidence 11 33556666667777888888888888776422 2 2458999999999999888888
Q ss_pred HHHHHHHHHHhcccchhhHH-----hHHHHHHHHHHhhCCCCHHHHHHHH-----HHHHHHHhhChh--------hhhHh
Q 002697 198 KLSLGSVNQFIMLMPSALFV-----SMDQYLQGLFLLSNDPSAEVRKLVC-----AAFNLLIEVRPS--------FLEPH 259 (891)
Q Consensus 198 ~~al~~l~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~~~~v~~~~~-----~~l~~l~~~~~~--------~~~~~ 259 (891)
..|++++..+.......... .++. +..++......+...|..+. .....+++.+.+ ++.+.
T Consensus 146 ~~am~vL~el~~ev~~ee~~~~~~~~l~~-m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~ 224 (1005)
T KOG2274|consen 146 HGAMRVLAELSDEVDVEEMFFVGPVSLAE-MYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQI 224 (1005)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccchhh-hhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999887543211111 1111 33444444444333333332 111222222222 22223
Q ss_pred HHHHHHHHHhhcC---CCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCC
Q 002697 260 LRNLFEYMLQVNK---DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRD 336 (891)
Q Consensus 260 l~~l~~~~~~~~~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~ 336 (891)
+...+..+.+..+ ..+-..+...+.++..+.+. .+..+.+++...++...+.....-.-...+.-+.++...
T Consensus 225 l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~n--fp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~--- 299 (1005)
T KOG2274|consen 225 LNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVEN--FPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSY--- 299 (1005)
T ss_pred HHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHh--hHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCc---
Confidence 3333333222222 22334677778888888877 666677777766665543322111000000000000000
Q ss_pred CCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcC-----c---chhhhhHHHHHHhhc---------
Q 002697 337 QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG-----D---EILPTLMPVIQAKLS--------- 399 (891)
Q Consensus 337 ~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~-----~---~~~~~l~~~l~~~l~--------- 399 (891)
+.| -+. | + ...++-.+....+.-+...+. + ..++.++..+..+++
T Consensus 300 -~~~-----------~ds--d-~---e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w 361 (1005)
T KOG2274|consen 300 -DAR-----------YDS--D-P---EEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVW 361 (1005)
T ss_pred -ccc-----------cCC--c-h---hhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 000 000 0 0 011233334443333332221 0 122333333222221
Q ss_pred ---------cCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhh---------hcCCC-ChHHHHHHHHHHHhh
Q 002697 400 ---------ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP---------LLDDK-FPLIRSISCWTLSRF 460 (891)
Q Consensus 400 ---------~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~---------~l~d~-~~~vr~~a~~~l~~~ 460 (891)
+.+ .....|..+...+-.+....+.. .+..+....-+ .++.+ ......+..++...+
T Consensus 362 ~sD~~~fV~dEd-~~~~~~~~~rd~~~~v~~~f~~~---~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~ 437 (1005)
T KOG2274|consen 362 TSDVNQFVADED-DGYTARISVRDLLLEVITTFGNE---GINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESV 437 (1005)
T ss_pred hccHHHhhccCC-CCchhhhhHHHHHHHHHHhccch---hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhc
Confidence 111 11344555444444444333211 11111111111 11121 223444444443333
Q ss_pred HHHHhhhhCCCcchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccch-hHHH
Q 002697 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR-RNLR 538 (891)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~-~~~~ 538 (891)
... .....++..++..+...+... .+..-.++..++..|.+... ...+.+..++...++.+..... ..+.
T Consensus 438 ~~~-------~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~-~~~~~~~~fl~~~v~~l~~~~~~~~ki 509 (1005)
T KOG2274|consen 438 RID-------DANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTV-INPQLLQHFLNATVNALTMDVPPPVKI 509 (1005)
T ss_pred ccC-------cchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhccCCCCchhH
Confidence 211 113444555555555555533 45555588888887776531 2234555666666677665444 3444
Q ss_pred HHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCC-CCcc-hHhHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Q 002697 539 IVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN-SDKD-LFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQ 616 (891)
Q Consensus 539 ~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~~-~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~ 616 (891)
.+.+++...+ +. +.+..+.|.++..+.+... ...+ +.-++|+++.+++.=.+.-...-..++|..+.++.
T Consensus 510 ~a~~~~~~~~---~~-----~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 510 SAVRAFCGYC---KV-----KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL 581 (1005)
T ss_pred HHHHHHHhcc---Cc-----eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH
Confidence 5555555554 33 3444555555555554332 1222 36788888887764332212223356666666655
Q ss_pred HHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCC----hHHHHHHHHHHhHHHH
Q 002697 617 TQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDA----SDVRQSAFALLGDLAR 692 (891)
Q Consensus 617 ~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~vr~~a~~~l~~l~~ 692 (891)
... + |+.+...+.+++..+.+. .....|+... ++|-+...+..+. +.....|+.+|..+++
T Consensus 582 k~s-----------~-DP~V~~~~qd~f~el~q~-~~~~g~m~e~--~iPslisil~~~~~~~~~~l~~~aidvLttvvr 646 (1005)
T KOG2274|consen 582 KYS-----------E-DPQVASLAQDLFEELLQI-AANYGPMQER--LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR 646 (1005)
T ss_pred Hhc-----------C-CchHHHHHHHHHHHHHHH-HHhhcchHHH--HHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence 432 1 666666667777766662 2223334333 5555555555433 6677889999999999
Q ss_pred hchHhhH-HhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhH-------HHHHHHHHHHHhcCChhh
Q 002697 693 VCPVHLQ-ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPI-------VMTVVLCLVPILKHSEEL 764 (891)
Q Consensus 693 ~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~-------~~~il~~l~~~l~~~~~~ 764 (891)
+.+..+. ..+...+|.+.+++-.++ +-.+-.++-.||..++....+++..| +..+++.+..+|+-
T Consensus 647 ~tp~pL~~~l~~~~FpaVak~tlHsd---D~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp---- 719 (1005)
T KOG2274|consen 647 NTPSPLPNLLICYAFPAVAKITLHSD---DHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDP---- 719 (1005)
T ss_pred cCCCCccHHHHHHHhHHhHhheeecC---ChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCC----
Confidence 9886543 456788899999887664 34677888888888776644332111 23445444444432
Q ss_pred hhhHHHhHHHHHhhhhh----hcCCccCcchhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChhhhH
Q 002697 765 NKSLIENSAITLGRLAW----VCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGAL 830 (891)
Q Consensus 765 ~~~~~~~~~~~l~~l~~----~~~~~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~ 830 (891)
..-+.++..+|+++. +.+..+.+.+++++..+++.|...+........+..|++|+..++..++
T Consensus 720 --~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l 787 (1005)
T KOG2274|consen 720 --ETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLL 787 (1005)
T ss_pred --ccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHH
Confidence 233556667777664 5566678889999999999998765544455556667777776665444
No 44
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1e-12 Score=136.30 Aligned_cols=358 Identities=17% Similarity=0.201 Sum_probs=250.4
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHHhhchh-ccccCCCCCCCcchhhhHHHHHHhhc-CCCHHHHHHHHHHHHHHhcc
Q 002697 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQ-VLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIML 210 (891)
Q Consensus 133 l~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~vr~~al~~l~~~~~~ 210 (891)
.+.+.+.+.++++..+..+...+..+...-.. -.. +-....++|.+++++. +.++.++..|..+|.++...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~-------~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsg 140 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPID-------EVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASG 140 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHH-------HHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcC
Confidence 56666777788887788888888777653221 000 1122468999999997 55799999999999999876
Q ss_pred cchhhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhH-H-HHHHHHHhhcCCCCH-HHHHHHHHHH
Q 002697 211 MPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-R-NLFEYMLQVNKDTDD-DVALEACEFW 286 (891)
Q Consensus 211 ~~~~~~~~~-~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~-~l~~~~~~~~~~~~~-~v~~~a~~~l 286 (891)
.++.-.-.+ ..-++.+..++.+++.+++.++..+|+.++...+.. ..+. . .+++.++..+...+. ...+.+...+
T Consensus 141 tse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~-Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~L 219 (514)
T KOG0166|consen 141 TSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC-RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTL 219 (514)
T ss_pred chhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH-HHHHHhhcchHHHHHHhccccchHHHHHHHHHH
Confidence 443322111 123667788899999999999999999998766543 2222 1 345555555555443 5677788889
Q ss_pred HHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccccc
Q 002697 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (891)
Q Consensus 287 ~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~ 366 (891)
..+++.+.....+ ..+..++|.+...+..+++ .
T Consensus 220 sNlcrgk~P~P~~-~~v~~iLp~L~~ll~~~D~----------------------------------------------~ 252 (514)
T KOG0166|consen 220 SNLCRGKNPSPPF-DVVAPILPALLRLLHSTDE----------------------------------------------E 252 (514)
T ss_pred HHHHcCCCCCCcH-HHHHHHHHHHHHHHhcCCH----------------------------------------------H
Confidence 9999884321111 2344556665544443221 1
Q ss_pred HHHHHHHHHHHHHHHcCcc----hhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHhhh
Q 002697 367 LRKCSAAALDVLSNVFGDE----ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPL 441 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~----~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~ 441 (891)
+..-|..++..++....+. +-..++|.+...+.+.+ ...+-.|+.++|.|+.|........+. ..+|.+...
T Consensus 253 Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~---~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~l 329 (514)
T KOG0166|consen 253 VLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS---PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNL 329 (514)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC---cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHH
Confidence 4566888888877665442 12456788888898888 889999999999999887655443333 378888888
Q ss_pred cC-CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--
Q 002697 442 LD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL-- 518 (891)
Q Consensus 442 l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l-- 518 (891)
+. ++...+|..|||++++++.+-+..+ ..-.-..++|.++..++..+..+|..|++|+.+++..+...-..|+
T Consensus 330 l~~s~~~~ikkEAcW~iSNItAG~~~qi----qaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~ 405 (514)
T KOG0166|consen 330 LSSSPKESIKKEACWTISNITAGNQEQI----QAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVE 405 (514)
T ss_pred hccCcchhHHHHHHHHHHHhhcCCHHHH----HHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 87 6677799999999999987655431 2233357899999999998899999999999999887765555555
Q ss_pred HHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhc
Q 002697 519 EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (891)
Q Consensus 519 ~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~ 552 (891)
..+++.++..|.-.+.+....+++++..+.+..+
T Consensus 406 ~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 406 QGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred cCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 3478888888876677777788999988887644
No 45
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.53 E-value=6.6e-11 Score=130.77 Aligned_cols=529 Identities=16% Similarity=0.161 Sum_probs=347.2
Q ss_pred cCChHHHHHHHHHHHHHHhhcccC-chHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhH
Q 002697 104 AADRHIRSTVGTIVSVVVQLGGIA-GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (891)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~~~-~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~ 182 (891)
+....++..++.-++.+....+.. .-.-+++.+..........+|+.++..+..+....+... ....+.
T Consensus 131 ~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~----------~~~~lv 200 (759)
T KOG0211|consen 131 DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEK----------LREHLV 200 (759)
T ss_pred cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHH----------HHHHHH
Confidence 567788888888888887766433 334566777777777777899999999988887665431 124445
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcccc-hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHH
Q 002697 183 PRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (891)
Q Consensus 183 ~~l~~~l~~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~ 261 (891)
|.+.....+.--.-|..++..+.......+ +.+...+ .+...++.+|..+.+|..+.+-++.++...+... ...
T Consensus 201 ~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~el---r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~--~~s 275 (759)
T KOG0211|consen 201 PLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKREL---RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEI--VKS 275 (759)
T ss_pred HHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHH---HHHHHhhccccchhhHHHHHhhhHHHHHHHHHHH--HHh
Confidence 555444333223456777788777766655 3343333 5566667788899999999999988887665522 223
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCc
Q 002697 262 NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKP 341 (891)
Q Consensus 262 ~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~ 341 (891)
.+++...+...|..+.||..|.+....+...-... . +....+.+.+++.
T Consensus 276 ~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~--~-d~~~~~~~~l~~~---------------------------- 324 (759)
T KOG0211|consen 276 EVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD--D-DVVKSLTESLVQA---------------------------- 324 (759)
T ss_pred hccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc--h-hhhhhhhHHHHHH----------------------------
Confidence 45555666677777889999998877766551111 0 1222222222210
Q ss_pred ccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcc-hhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHh
Q 002697 342 RFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (891)
Q Consensus 342 ~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~ 420 (891)
.++..|.+|......+..+...+|.. ..+...+.....+++.. |..|.+...-...+.
T Consensus 325 ------------------~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~---~e~r~a~a~~~~~l~ 383 (759)
T KOG0211|consen 325 ------------------VEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEE---WEVRYAIAKKVQKLA 383 (759)
T ss_pred ------------------hcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchh---hhhhHHhhcchHHHh
Confidence 01246889999999999999998773 34556777777788887 999988876666665
Q ss_pred hcchh--hhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHH
Q 002697 421 EGCIK--GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEA 498 (891)
Q Consensus 421 ~~~~~--~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~ 498 (891)
..... +..-....++|.+.....|.+..||.+.+..+......++ ........++.++..++|..+.||..
T Consensus 384 ~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-------k~~ti~~llp~~~~~l~de~~~V~ln 456 (759)
T KOG0211|consen 384 CYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-------KERTISELLPLLIGNLKDEDPIVRLN 456 (759)
T ss_pred hhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-------cCcCccccChhhhhhcchhhHHHHHh
Confidence 43331 1122334568888889999999999988766555444333 34445677788888888989999998
Q ss_pred HHHHHHHHHHHh-cccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCC
Q 002697 499 ACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN 577 (891)
Q Consensus 499 a~~al~~l~~~~-~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 577 (891)
...-+..+.... -..+.-+....++.+...-....++++..+.+.+-.++...|..+.++. +..+...|.. +
T Consensus 457 li~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~-----~~~l~~~~l~--d 529 (759)
T KOG0211|consen 457 LIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEK-----LAELLRTWLP--D 529 (759)
T ss_pred hHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHH-----HHHHHHhhhh--h
Confidence 887664443332 2234455667777777666666778888889999999888886555433 3233333321 1
Q ss_pred CCcch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHH
Q 002697 578 SDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIE 656 (891)
Q Consensus 578 ~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~ 656 (891)
....+ .++..++..++..+|... +...+++.++....+ +..-.|.+.++.+..++..+|..+.
T Consensus 530 ~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q--------------~~y~~R~t~l~si~~la~v~g~ei~ 593 (759)
T KOG0211|consen 530 HVYSIREAAARNLPALVETFGSEW--ARLEEIPKLLAMDLQ--------------DNYLVRMTTLFSIHELAEVLGQEIT 593 (759)
T ss_pred hHHHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcC--------------cccchhhHHHHHHHHHHHHhccHHH
Confidence 12233 567777888888888432 233445544433221 1255677888899999999998753
Q ss_pred hhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHH
Q 002697 657 SLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (891)
Q Consensus 657 ~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~ 736 (891)
. . .++|.+.....|..+.||-.+...+..+.+.+.... .=..+.|.+....+++ +.++|-.|..+++.+.
T Consensus 594 ~--~--~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~--~~~~v~pll~~L~~d~----~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 594 C--E--DLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESV--RDEEVLPLLETLSSDQ----ELDVRYRAILAFGSIE 663 (759)
T ss_pred H--H--HHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHH--HHHHHHHHHHHhccCc----ccchhHHHHHHHHHHH
Confidence 2 1 378888888899999999999999999888775321 1123444444444455 6789999999999887
Q ss_pred Hhc
Q 002697 737 VKA 739 (891)
Q Consensus 737 ~~~ 739 (891)
...
T Consensus 664 l~~ 666 (759)
T KOG0211|consen 664 LSR 666 (759)
T ss_pred HHH
Confidence 554
No 46
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=99.45 E-value=2.6e-11 Score=128.10 Aligned_cols=381 Identities=14% Similarity=0.160 Sum_probs=215.4
Q ss_pred cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHc----ccchhHHH-HHHHHHHH
Q 002697 472 NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG----KYQRRNLR-IVYDAIGT 546 (891)
Q Consensus 472 ~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~----~~~~~~~~-~~~~al~~ 546 (891)
+..++...++..++..+..+...-.+..++|+++++...++.+.|+...+++.|..++. +++++... ..+|+++.
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~ 98 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA 98 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence 46778899999999999765445567789999999999999999999988888888874 45555555 78999999
Q ss_pred HHHHhcccCC--chhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHhh
Q 002697 547 LADAVGFELN--QPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALG-AGFTQFAQPVFQRCINIIQTQQLAKV 623 (891)
Q Consensus 547 l~~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~ 623 (891)
+++...+.-. -..+.+.++|.+..++++...+ -+..++..++.+..... ..+.+....+++.++ .....
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~E--F~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll----~p~lW-- 170 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPPFQEILQQDVQE--FIPYVFQILAQLLELRPSSPLPDAYKQLFPPLL----SPALW-- 170 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TT--THHHHHHHHHHHHHHSS--S--TTTGGGHHHHT----SGGGG--
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHc----Ccchh--
Confidence 9997553210 0157888999999888874311 11344444444444333 122222222222221 10000
Q ss_pred cCcccCCCCchhHHHHHhhhHHHHHHHHhhhHH--hhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchH-hhHH
Q 002697 624 DSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIE--SLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV-HLQA 700 (891)
Q Consensus 624 ~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~ 700 (891)
| .+.-+-....++.++...-+..+. +.+. .++.+.-+++.++..+ ..+|.++..++.+++. .+.|
T Consensus 171 -------e-~~gniPalvrLL~a~i~k~~~~i~~~~~l~--~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~ 238 (435)
T PF03378_consen 171 -------E-RRGNIPALVRLLQAYIKKDPSFIVANNQLE--PILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEP 238 (435)
T ss_dssp -------G-STTTHHHHHHHHHHHHHHHGGG----S-CH--HHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGG
T ss_pred -------c-cCCCcCcHHHHHHHHHHhCchhhcchhhHH--HHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHH
Confidence 0 011112223344444444333331 2222 2555555666555433 5799999999999995 6899
Q ss_pred hHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhh-hhhHHHHHHHHHHHHhcCCh------hh-hhhHHHhH
Q 002697 701 RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQE-ISPIVMTVVLCLVPILKHSE------EL-NKSLIENS 772 (891)
Q Consensus 701 ~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~-~~~~~~~il~~l~~~l~~~~------~~-~~~~~~~~ 772 (891)
|++.++..++++|+.++ +...+...+..++.++.+.+.+ +...++.+.+.++..+-..- .. ...-|.-+
T Consensus 239 yl~~I~~lll~RLq~sk---T~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~ 315 (435)
T PF03378_consen 239 YLKQIFTLLLTRLQSSK---TEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKIC 315 (435)
T ss_dssp GHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCC---cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHH
Confidence 99999999999999876 5667777777777776555432 33333333333332222110 11 12234447
Q ss_pred HHHHhhhhhhcCCccC---cchhHHHHHHHhhccCCCCch---------HH---HHHHHH-HHHHHhhChhhhHhhHHHH
Q 002697 773 AITLGRLAWVCPELVS---PHMEHFMQPWCIALSMIRDDT---------EK---EDAFRG-LCAMVKANPSGALSSLVFM 836 (891)
Q Consensus 773 ~~~l~~l~~~~~~~~~---~~~~~~l~~~~~~l~~~~~~~---------e~---~~~~~~-l~~l~~~~~~~~~~~l~~~ 836 (891)
+.++++++...+.... ..+..++..+++.+....+.. |. ...|.. +++|.........|.
T Consensus 316 ~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p~~~~~~~~e~~~~~~d~~~~gy~~~fs~L~~a~~~~~Dp~---- 391 (435)
T PF03378_consen 316 AVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERPPEASAADEEDFIDEEDVEDIGYQVSFSKLAFAGKKPRDPL---- 391 (435)
T ss_dssp HHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTTSTT-S----S-----------TT-GGG--GGG------S-----
T ss_pred HHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCCccccccccccccccccchhcccchhhHHHHhCCCCCCCCC----
Confidence 7788888876654332 245566666665554322110 00 012222 333333322222221
Q ss_pred hhHhhcccccCchhHHHHHHHHHHHHHhhcChhhHHHHHhc-CCHHHHHHhhhc
Q 002697 837 CRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSA-LEPPVKDKLSKY 889 (891)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~ 889 (891)
+...+.+..+.+.+..+.+.+|+ .+..+.++ ++++.++.|++|
T Consensus 392 ---------~~i~d~~~~~~~~L~~~~~~~~G-~~~~~i~~~l~~~~~~~L~~y 435 (435)
T PF03378_consen 392 ---------PEIPDPKQYLAQSLSKLSQAHPG-KIPPLIQQQLPPEAQQALQQY 435 (435)
T ss_dssp ---------TTTTCHHHHHHHHHHHHHHHTTS-SHHHHHGGGS-HHHHHHHHH-
T ss_pred ---------CCCCCHHHHHHHHHHHHHHhCCC-chHHHHHhhCCHHHHHHhccC
Confidence 22346889999999999999985 88888877 999999999998
No 47
>PRK09687 putative lyase; Provisional
Probab=99.39 E-value=1.1e-10 Score=116.90 Aligned_cols=253 Identities=15% Similarity=0.117 Sum_probs=177.7
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccc
Q 002697 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (891)
Q Consensus 133 l~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (891)
++.|...+.+++..+|..+...|..+-. +..++.+...++++++.+|..|+.+|+.+.....
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG------------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR 86 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc------------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 3556667788999999999999865432 4567888888999999999999999999754211
Q ss_pred hhhHHhHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 002697 213 SALFVSMDQYLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (891)
Q Consensus 213 ~~~~~~~~~~l~~l~~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~ 291 (891)
. ....++.+..+ ..|+++.||..++.+|+.+....... ....++.+.....|.+..||..+...+..+..
T Consensus 87 ~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 87 C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC
Confidence 0 12334555544 57889999999999999885433211 23455556666778889999988887754422
Q ss_pred cCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002697 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (891)
Q Consensus 292 ~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a 371 (891)
+..++.++..+.. ++|.+|..|
T Consensus 158 ------------~~ai~~L~~~L~d----------------------------------------------~~~~VR~~A 179 (280)
T PRK09687 158 ------------EAAIPLLINLLKD----------------------------------------------PNGDVRNWA 179 (280)
T ss_pred ------------HHHHHHHHHHhcC----------------------------------------------CCHHHHHHH
Confidence 1223333332220 124589999
Q ss_pred HHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHH
Q 002697 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRS 451 (891)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~ 451 (891)
..+|+.+ ..+ -+.+.+.+...+.+.+ |.+|..|+.+||.+.. +..+|.+++.++++. +|.
T Consensus 180 ~~aLg~~--~~~---~~~~~~~L~~~L~D~~---~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~ 239 (280)
T PRK09687 180 AFALNSN--KYD---NPDIREAFVAMLQDKN---EEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGD 239 (280)
T ss_pred HHHHhcC--CCC---CHHHHHHHHHHhcCCC---hHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHH
Confidence 9999877 111 2345666777778887 9999999999988643 246888888888876 677
Q ss_pred HHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 002697 452 ISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFAT 505 (891)
Q Consensus 452 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-d~~~~v~~~a~~al~~ 505 (891)
.++.++|++.. +..++.+...+. +++..|+..|..++..
T Consensus 240 ~a~~ALg~ig~---------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 240 LIIEAAGELGD---------------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHhcCC---------------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 88889988764 256677777775 6788999988887753
No 48
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.37 E-value=3.5e-09 Score=117.42 Aligned_cols=574 Identities=15% Similarity=0.113 Sum_probs=339.7
Q ss_pred hHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 002697 129 WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (891)
Q Consensus 129 w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (891)
|-..+..+.......+...|..+..-+..+.-..+... ....++|.+.+.+ +...+|+..+..-++.+.
T Consensus 80 ~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~----------tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~ 148 (759)
T KOG0211|consen 80 SLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVER----------TRLELIPFLTEAE-DDEDEVLLDLAEQLGTFL 148 (759)
T ss_pred ccccHHHHhhccCchhhhhhhhhhccccchhhhcccch----------hhhhhhhHHHHhc-cchhHHHHHHHHHhcccc
Confidence 55555666666666666666666666655554444322 1356788888877 667778887777777776
Q ss_pred cccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 002697 209 MLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (891)
Q Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 288 (891)
......- +...+++.+..++.+....+|..+.+.+...+...++.-. ...+++.+.....+..-..|..++..+..
T Consensus 149 ~~v~~~~--~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~--~~~lv~l~~~l~~~d~~~sr~sacglf~~ 224 (759)
T KOG0211|consen 149 PDVGGPE--YAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL--REHLVPLLKRLATGDWFQSRLSACGLFGK 224 (759)
T ss_pred hhccchh--HHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH--HHHHHHHHHHccchhhhhcchhhhhhhHH
Confidence 6543211 1122345555555555667899999999888776654322 23344443333333222234445554443
Q ss_pred hhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHH
Q 002697 289 YFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR 368 (891)
Q Consensus 289 l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r 368 (891)
..... ....++.-+..+...+ . + |+ ...+|
T Consensus 225 ~~~~~-~~~~vk~elr~~~~~l----c------------------------------------~----d~-----~~~Vr 254 (759)
T KOG0211|consen 225 LYVSL-PDDAVKRELRPIVQSL----C------------------------------------Q----DD-----TPMVR 254 (759)
T ss_pred hccCC-ChHHHHHHHHHHHHhh----c------------------------------------c----cc-----chhhH
Confidence 32220 1022222222111111 0 0 11 12589
Q ss_pred HHHHHHHHHHHHHcCc-chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCCh
Q 002697 369 KCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP 447 (891)
Q Consensus 369 ~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~ 447 (891)
.++++-++.++...+. .....+++.+.+...+.. -.+|++|...+..+........ +....+.+.+++..+|++.
T Consensus 255 ~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~Ddq---dsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~ 330 (759)
T KOG0211|consen 255 RAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQ---DSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSW 330 (759)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcch---hhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhH
Confidence 9999999999999977 344567777888887776 8899999999998887655432 5666788999999999999
Q ss_pred HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccc--hHhHHHHHHHH
Q 002697 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--APRLEIILQHL 525 (891)
Q Consensus 448 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~--~~~l~~il~~l 525 (891)
.+|.........+...+.+. ..-....+.....+++....+|.+++.-...+.......- .-....+++.+
T Consensus 331 ~v~~~~~~~~~~L~~~~~~~-------~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~ 403 (759)
T KOG0211|consen 331 RVSYMVADKFSELSSAVGPS-------ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEV 403 (759)
T ss_pred HHHHHHhhhhhhHHHHhccc-------cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHH
Confidence 99998777666666655421 1112344556667778888899888888888777654211 11233456666
Q ss_pred HHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHhcc-ccccc
Q 002697 526 MMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA-GFTQF 603 (891)
Q Consensus 526 ~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~-~~~~~ 603 (891)
.....+....++......+..+....| .+.-.+.+.|.+...++. +.+.+ ..++..++.+-...+. +..-+
T Consensus 404 ~~lv~d~~~~vr~a~a~~~~~~~p~~~----k~~ti~~llp~~~~~l~d---e~~~V~lnli~~ls~~~~v~~v~g~~~~ 476 (759)
T KOG0211|consen 404 QVLVLDNALHVRSALASVITGLSPILP----KERTISELLPLLIGNLKD---EDPIVRLNLIDKLSLLEEVNDVIGISTV 476 (759)
T ss_pred HHHHhcccchHHHHHhccccccCccCC----cCcCccccChhhhhhcch---hhHHHHHhhHHHHHHHHhccCcccchhh
Confidence 666655555555433222222222233 224455666665554443 33433 3444333322222111 22222
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHH
Q 002697 604 AQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSA 683 (891)
Q Consensus 604 ~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a 683 (891)
.+..++.+...- .+..|..+...++.+..++...|.. ++.+ .+-+++..++.+....+|..|
T Consensus 477 s~slLp~i~el~--------------~d~~wRvr~ail~~ip~la~q~~~~---~~~~-~~~~l~~~~l~d~v~~Ir~~a 538 (759)
T KOG0211|consen 477 SNSLLPAIVELA--------------EDLLWRVRLAILEYIPQLALQLGVE---FFDE-KLAELLRTWLPDHVYSIREAA 538 (759)
T ss_pred hhhhhhhhhhhc--------------cchhHHHHHHHHHHHHHHHHhhhhH---HhhH-HHHHHHHhhhhhhHHHHHHHH
Confidence 222223221110 1013566667778888887777733 3332 366677777778888999999
Q ss_pred HHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChh
Q 002697 684 FALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEE 763 (891)
Q Consensus 684 ~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~ 763 (891)
...+..++..+|.. =+...+++.++....+. +..+|...+.++..++..+|.++ +...+++.+..+..++.
T Consensus 539 a~~l~~l~~~~G~~--w~~~~~i~k~L~~~~q~----~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~v- 609 (759)
T KOG0211|consen 539 ARNLPALVETFGSE--WARLEEIPKLLAMDLQD----NYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPV- 609 (759)
T ss_pred HHHhHHHHHHhCcc--hhHHHhhHHHHHHhcCc----ccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCc-
Confidence 99999999988832 22345666666665554 56889999999999998888764 44555666666666664
Q ss_pred hhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccCCCCchHHHHHHHH
Q 002697 764 LNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRG 817 (891)
Q Consensus 764 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~ 817 (891)
..+|-|++..+.++...-... .....+......|....+.+-+-.+..+
T Consensus 610 --anVR~nvak~L~~i~~~L~~~---~~~~~v~pll~~L~~d~~~dvr~~a~~a 658 (759)
T KOG0211|consen 610 --ANVRINVAKHLPKILKLLDES---VRDEEVLPLLETLSSDQELDVRYRAILA 658 (759)
T ss_pred --hhhhhhHHHHHHHHHhhcchH---HHHHHHHHHHHHhccCcccchhHHHHHH
Confidence 689999999999888754332 2455555555666554444444444443
No 49
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.37 E-value=1.9e-10 Score=135.96 Aligned_cols=273 Identities=21% Similarity=0.201 Sum_probs=193.2
Q ss_pred HhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCC
Q 002697 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (891)
Q Consensus 96 ~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~ 175 (891)
+.|+..|.|+++.||..++..++.+. -++.++.|.+.++++++.+|..++.+|..+.+....
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~-------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~----------- 685 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT-------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP----------- 685 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc-------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----------
Confidence 46667788899999999888888653 156778888888999999999999999777542211
Q ss_pred cchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhh
Q 002697 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (891)
Q Consensus 176 ~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~ 255 (891)
.+.+...|+++++.||..|+.+|..+-... ...+...+.|+++.+|..++..|..+-. +
T Consensus 686 ------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--~-- 744 (897)
T PRK13800 686 ------APALRDHLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD--V-- 744 (897)
T ss_pred ------hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--c--
Confidence 245667788899999999999888764211 1124456788999999999999886521 1
Q ss_pred hhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCC
Q 002697 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (891)
Q Consensus 256 ~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~ 335 (891)
+.+...+.|.+.+||..+.+.+..+.... .. .++.+...+.
T Consensus 745 ---------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--~~--------~~~~L~~ll~-------------------- 785 (897)
T PRK13800 745 ---------ESVAGAATDENREVRIAVAKGLATLGAGG--AP--------AGDAVRALTG-------------------- 785 (897)
T ss_pred ---------HHHHHHhcCCCHHHHHHHHHHHHHhcccc--ch--------hHHHHHHHhc--------------------
Confidence 12345678889999999988887765431 00 0122211111
Q ss_pred CCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHH
Q 002697 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLA 415 (891)
Q Consensus 336 ~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~ 415 (891)
| + ++.+|..|...|..+.. .. .+.+.+...+.+++ |.+|.+|+.+
T Consensus 786 ---------------------D-~----d~~VR~aA~~aLg~~g~---~~---~~~~~l~~aL~d~d---~~VR~~Aa~a 830 (897)
T PRK13800 786 ---------------------D-P----DPLVRAAALAALAELGC---PP---DDVAAATAALRASA---WQVRQGAARA 830 (897)
T ss_pred ---------------------C-C----CHHHHHHHHHHHHhcCC---cc---hhHHHHHHHhcCCC---hHHHHHHHHH
Confidence 0 0 13589999888866522 11 23345667788888 9999999999
Q ss_pred HHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHH
Q 002697 416 LGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRV 495 (891)
Q Consensus 416 l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v 495 (891)
|+.+.. +..++.+...++|+++.||..|+++|+++.. . ....+.+...++|.+..|
T Consensus 831 L~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-----------~---~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 831 LAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWPG-----------D---PAARDALTTALTDSDADV 886 (897)
T ss_pred HHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC-----------C---HHHHHHHHHHHhCCCHHH
Confidence 987642 1245778889999999999999999998610 1 134556667888999999
Q ss_pred HHHHHHHHHH
Q 002697 496 QEAACSAFAT 505 (891)
Q Consensus 496 ~~~a~~al~~ 505 (891)
|..|..+|..
T Consensus 887 r~~A~~aL~~ 896 (897)
T PRK13800 887 RAYARRALAH 896 (897)
T ss_pred HHHHHHHHhh
Confidence 9999999863
No 50
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.2e-07 Score=104.97 Aligned_cols=512 Identities=16% Similarity=0.139 Sum_probs=286.8
Q ss_pred hhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhccc
Q 002697 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLD 167 (891)
Q Consensus 89 ~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~ 167 (891)
+..+.+.+.|+.+++|.+..||-.+|..++.++...|+.--.+.+..+...++-. +....++++.+|+.++..---
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL--- 413 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL--- 413 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc---
Confidence 4566788889999999999999999999999999886433345555555544332 467889999999988763211
Q ss_pred cCCCCCCCcchhhhHHHHHHhhc--------CCCHHHHHHHHHHHHHHhccc-chhhHHhHHHHHHHHHH-hhCCCCHHH
Q 002697 168 SDVPGLAECPINIFLPRLLQFFQ--------SPHTSLRKLSLGSVNQFIMLM-PSALFVSMDQYLQGLFL-LSNDPSAEV 237 (891)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~--------~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~l~~l~~-~~~~~~~~v 237 (891)
....+..++|.+++.+. +.+..||.+|+-....+.... |..+.+.+..+...++. .+-|++-.+
T Consensus 414 ------lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 414 ------LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred ------chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhH
Confidence 01235678888888775 236689999999999988654 44556655555555444 445888899
Q ss_pred HHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHh-hccC
Q 002697 238 RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLS-NMIY 316 (891)
Q Consensus 238 ~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~-~l~~ 316 (891)
|.+|..+|.+.+...+.. ||--.++... | .-.|... -+++..++.. ......|...++..++. .+.
T Consensus 488 RRAAsAAlqE~VGR~~n~--p~Gi~Lis~~-----d-y~sV~~r-sNcy~~l~~~---ia~~~~y~~~~f~~L~t~Kv~- 554 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNF--PHGISLISTI-----D-YFSVTNR-SNCYLDLCVS---IAEFSGYREPVFNHLLTKKVC- 554 (1133)
T ss_pred hHHHHHHHHHHhccCCCC--CCchhhhhhc-----c-hhhhhhh-hhHHHHHhHH---HHhhhhHHHHHHHHHHhcccc-
Confidence 999999999988776554 3222233221 0 0111111 1223333221 11222333444444332 111
Q ss_pred ChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccc--cHHHHHHHHHHHHHHHcCcchhhhhHHHH
Q 002697 317 ADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW--NLRKCSAAALDVLSNVFGDEILPTLMPVI 394 (891)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~--~~r~~a~~~l~~l~~~~~~~~~~~l~~~l 394 (891)
.| .+|..++.+|..++...++......+|-+
T Consensus 555 -----------------------------------------------HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~l 587 (1133)
T KOG1943|consen 555 -----------------------------------------------HWDVKIRELAAYALHKLSLTEPKYLADYVLPPL 587 (1133)
T ss_pred -----------------------------------------------cccHHHHHHHHHHHHHHHHhhHHhhcccchhhh
Confidence 12 47889999999999988887666666666
Q ss_pred HHhhccCCCcchHHHHHHHHHHHHHhhcchhhh--hh--------hHHHHHHHHhhhcCCCC--hHHHHHHHHHHHhhHH
Q 002697 395 QAKLSASGDEAWKDREAAVLALGAIAEGCIKGL--YP--------HLSEIVAFLIPLLDDKF--PLIRSISCWTLSRFSK 462 (891)
Q Consensus 395 ~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~--~~--------~l~~i~~~l~~~l~d~~--~~vr~~a~~~l~~~~~ 462 (891)
.....+.+ ...|++...+.|.+..++...- .. .++.+++.+...--+.. ...|.+.+..+.++..
T Consensus 588 ld~~ls~~---~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~ 664 (1133)
T KOG1943|consen 588 LDSTLSKD---ASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSL 664 (1133)
T ss_pred hhhhcCCC---hHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhh
Confidence 66666677 9999999999998887654311 11 11112222222221222 3556666666555543
Q ss_pred HHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHcccc-hhHHHH
Q 002697 463 FIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGKYQ-RRNLRI 539 (891)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~~~~~l~~il~~l~~~l~~~~-~~~~~~ 539 (891)
.-... ......+..-..+.+.+.+++ .+|..|.++++.++... .+.-.. ..++...+..+.+.. ...+..
T Consensus 665 s~~~~----~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~--~~li~~~ls~~~~~~~~~~r~g 737 (1133)
T KOG1943|consen 665 SKDRL----FQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEE--APLITRYLSRLTKCSEERIRRG 737 (1133)
T ss_pred ccchh----HHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhh--hHHHHHHHHHhcCchHHHHHHH
Confidence 21110 001111112222333334444 78999999999998764 111111 145566666666553 333433
Q ss_pred HHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcc-hHhHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHH
Q 002697 540 VYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQT 617 (891)
Q Consensus 540 ~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~l~~i~~~~~~-~~~~~~~~i~~~l~~~l~~ 617 (891)
..-+++.+...+ ..-++-+.+...++....+. .+.. ....+..+..++..++. .+..-.++++..+++.+++
T Consensus 738 ~~lal~~lp~~~----i~~~~q~~lc~~~l~~~p~d--~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~ldd 811 (1133)
T KOG1943|consen 738 LILALGVLPSEL----IHRHLQEKLCKLVLELLPSD--AWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDD 811 (1133)
T ss_pred HHHHHccCcHHh----hchHHHHHHHHHHhccCccc--ccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 333333322111 00133344433333222211 0111 24456666677777663 5666677888888888876
Q ss_pred HHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhc---CCChHHHHHHHHHHhHHHHh
Q 002697 618 QQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM---DDASDVRQSAFALLGDLARV 693 (891)
Q Consensus 618 ~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~vr~~a~~~l~~l~~~ 693 (891)
.... +.++- ..-+|..++.++..+...+.. .++++...+-+.+...++ ++....|+.|..++..+..+
T Consensus 812 Yttd-----~rGDV-GswVReaAm~al~~~~~~l~~--p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 812 YTTD-----SRGDV-GSWVREAAMKALSSLLDTLSS--PKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred cccc-----cCccH-HHHHHHHHHHHHHhhhhhhcC--cccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 5321 11110 234677788887776665543 223322112222222222 33445577788877777665
No 51
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1e-06 Score=101.08 Aligned_cols=152 Identities=17% Similarity=0.200 Sum_probs=127.7
Q ss_pred ChhhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCCh
Q 002697 10 QEQGFNEICRLLEQQISP-SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (891)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~-d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~ 88 (891)
+.....++++++....++ .+.+.|.+|.+.+.+++..|+.|.....++.. +..+.+|++|.-+|-+.|..+|+.++.
T Consensus 5 ~~~l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~--s~~~~~k~f~Lqlle~vik~~W~~~~~ 82 (1041)
T KOG2020|consen 5 DNKLDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKL--STNPILKYFALQLLENVIKFRWNSLPV 82 (1041)
T ss_pred chhHHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhc--cCCchhheeeHHHHHHHHHHhcccCCc
Confidence 445566788888888887 33349999999999999999999888888875 568899999999999999999999999
Q ss_pred hhHHHHHHhHhhhhh--cC-------ChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHH
Q 002697 89 SNQQYIKSELLPCLG--AA-------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKIC 159 (891)
Q Consensus 89 ~~~~~i~~~ll~~L~--~~-------~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~ 159 (891)
+.+.++|.-++.... .+ ...++.+++.++..|++.++++.||++++.+.+.... ++..++.++.++..+.
T Consensus 83 ~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~-s~~~~el~m~Il~lLs 161 (1041)
T KOG2020|consen 83 EERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT-SETVCELSMIILLLLS 161 (1041)
T ss_pred cccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc-CcccchHHHHHHHHHH
Confidence 999999999888653 11 3457889999999999999999999999999988773 4567788888888888
Q ss_pred hhchh
Q 002697 160 EDIPQ 164 (891)
Q Consensus 160 ~~~~~ 164 (891)
+++..
T Consensus 162 Edvf~ 166 (1041)
T KOG2020|consen 162 EEVFD 166 (1041)
T ss_pred HHHhc
Confidence 87654
No 52
>PRK09687 putative lyase; Provisional
Probab=99.34 E-value=3.8e-10 Score=112.96 Aligned_cols=252 Identities=17% Similarity=0.122 Sum_probs=175.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHH
Q 002697 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (891)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~ 261 (891)
.+.+...|.+++..||..|+.+|..+-. +..+..+..++.++++.+|..+..+|+.+...... ..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~ 89 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QD 89 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hH
Confidence 5667888899999999999999987642 22344555667888999999999999987542211 23
Q ss_pred HHHHHHHhh-cCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCC
Q 002697 262 NLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (891)
Q Consensus 262 ~l~~~~~~~-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~ 340 (891)
..++.+... .++++..||..|...+..+......+ .+.++..+...+.
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~------~~~a~~~l~~~~~------------------------- 138 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY------SPKIVEQSQITAF------------------------- 138 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc------chHHHHHHHHHhh-------------------------
Confidence 445555544 57889999999999998875431111 1122222211111
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHh
Q 002697 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (891)
Q Consensus 341 ~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~ 420 (891)
+.+|.+|..++.+|+.+ ++ +..++.+...+.+++ |.+|..|+.+||.+.
T Consensus 139 ---------------------D~~~~VR~~a~~aLg~~----~~---~~ai~~L~~~L~d~~---~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 139 ---------------------DKSTNVRFAVAFALSVI----ND---EAAIPLLINLLKDPN---GDVRNWAAFALNSNK 187 (280)
T ss_pred ---------------------CCCHHHHHHHHHHHhcc----CC---HHHHHHHHHHhcCCC---HHHHHHHHHHHhcCC
Confidence 01367999999988543 22 245677777788888 999999999999883
Q ss_pred hcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHH
Q 002697 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAAC 500 (891)
Q Consensus 421 ~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~ 500 (891)
.+. +.+.+.++..+.|+++.||..|.++||++.. ...++.+++.+.+++ ++..++
T Consensus 188 ~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---------------~~av~~Li~~L~~~~--~~~~a~ 242 (280)
T PRK09687 188 YDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD---------------KRVLSVLIKELKKGT--VGDLII 242 (280)
T ss_pred CCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC---------------hhHHHHHHHHHcCCc--hHHHHH
Confidence 222 2467788889999999999999999998532 367888888888865 677788
Q ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHc-ccchhHHHHHHHHHH
Q 002697 501 SAFATLEEEAAEELAPRLEIILQHLMMAFG-KYQRRNLRIVYDAIG 545 (891)
Q Consensus 501 ~al~~l~~~~~~~~~~~l~~il~~l~~~l~-~~~~~~~~~~~~al~ 545 (891)
.||+.+-. +..++.|.+.++ ..+..++..+.+++.
T Consensus 243 ~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 243 EAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 88886643 245666677775 455566666666654
No 53
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.34 E-value=3e-10 Score=134.25 Aligned_cols=273 Identities=17% Similarity=0.118 Sum_probs=193.8
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccc
Q 002697 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (891)
Q Consensus 133 l~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (891)
++.|.+.+.++++.+|..|+..|+.+.. +..++.|.+.|.|+++.||..|+.+|..+.+..+
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~ 684 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP------------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP 684 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc------------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC
Confidence 3677788889999999999999976432 4467888889999999999999999988765432
Q ss_pred hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 002697 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (891)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (891)
. .+.+...+.++++.+|..++..|..+....+ ..++..+.+.+..+|..|...+..+-..
T Consensus 685 ~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-----------~~l~~~L~D~d~~VR~~Av~aL~~~~~~ 744 (897)
T PRK13800 685 P---------APALRDHLGSPDPVVRAAALDVLRALRAGDA-----------ALFAAALGDPDHRVRIEAVRALVSVDDV 744 (897)
T ss_pred c---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-----------HHHHHHhcCCCHHHHHHHHHHHhcccCc
Confidence 2 1234445667888999999988877642111 1234567889999999888877654211
Q ss_pred CCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 002697 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (891)
Q Consensus 293 ~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~ 372 (891)
+.+... +. | +++.+|..+.
T Consensus 745 -----------~~l~~~----l~-----------------------------------------D-----~~~~VR~~aa 763 (897)
T PRK13800 745 -----------ESVAGA----AT-----------------------------------------D-----ENREVRIAVA 763 (897)
T ss_pred -----------HHHHHH----hc-----------------------------------------C-----CCHHHHHHHH
Confidence 111111 10 0 0235899999
Q ss_pred HHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHH
Q 002697 373 AALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSI 452 (891)
Q Consensus 373 ~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 452 (891)
..|..+...-+ ..++.+..++++++ +.+|.+|+.+|+.+... ..+.+.+...+.|+++.||.+
T Consensus 764 ~aL~~~~~~~~-----~~~~~L~~ll~D~d---~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~ 826 (897)
T PRK13800 764 KGLATLGAGGA-----PAGDAVRALTGDPD---PLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQG 826 (897)
T ss_pred HHHHHhccccc-----hhHHHHHHHhcCCC---HHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHH
Confidence 99877644321 12456667788888 99999999999887542 112355778889999999999
Q ss_pred HHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHccc
Q 002697 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (891)
Q Consensus 453 a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~ 532 (891)
|+++|+.+.. ...++.|...+.|++..||..|..+|+.+- . -+...+.|...+++.
T Consensus 827 Aa~aL~~l~~---------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~------~---~~~a~~~L~~al~D~ 882 (897)
T PRK13800 827 AARALAGAAA---------------DVAVPALVEALTDPHLDVRKAAVLALTRWP------G---DPAARDALTTALTDS 882 (897)
T ss_pred HHHHHHhccc---------------cchHHHHHHHhcCCCHHHHHHHHHHHhccC------C---CHHHHHHHHHHHhCC
Confidence 9999987642 234578888889999999999999999851 0 124556667888888
Q ss_pred chhHHHHHHHHHH
Q 002697 533 QRRNLRIVYDAIG 545 (891)
Q Consensus 533 ~~~~~~~~~~al~ 545 (891)
+..++..+.++|.
T Consensus 883 d~~Vr~~A~~aL~ 895 (897)
T PRK13800 883 DADVRAYARRALA 895 (897)
T ss_pred CHHHHHHHHHHHh
Confidence 8888888877765
No 54
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.32 E-value=1.8e-08 Score=110.80 Aligned_cols=397 Identities=17% Similarity=0.148 Sum_probs=256.2
Q ss_pred HhhhhhcCChHHHHHHHHHHHHHHhhccc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCc
Q 002697 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (891)
Q Consensus 98 ll~~L~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~ 176 (891)
++..|.+.+...-..++.++..+.....+ ..-+++.+.|...+.++++.+|..++..++.+.+.-...... .
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~-~------ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL-L------ 115 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH-h------
Confidence 66777766666667778888888876533 346888999999999999999999999998887654331110 0
Q ss_pred chhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhh
Q 002697 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (891)
Q Consensus 177 ~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~ 255 (891)
.-+.+++.++..+.+++..|...|++++..+.... ..+...++ ..+..+..++..++..+|..++++++.++...++.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 11678999999999999999999999999998753 22222211 22566666666667789999999999999888877
Q ss_pred hhHhHH-HHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCC
Q 002697 256 LEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (891)
Q Consensus 256 ~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~ 334 (891)
+..... .+++.++..+.+.|.=++..+++.+..+++.+...+.+.. ..+++.+...+...++|.
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~--~gi~~~L~~~l~~~~~dp------------- 259 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ--QGIFDKLSNLLQDSEEDP------------- 259 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh--CCHHHHHHHHHhccccCC-------------
Confidence 654332 4888888888887777899999999999986433333221 235666655554332211
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccccccHHH-HHHHHHHHHHHHcCcch---hhhhHHHHHHhhccCCCcchHHHH
Q 002697 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK-CSAAALDVLSNVFGDEI---LPTLMPVIQAKLSASGDEAWKDRE 410 (891)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~-~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~~r~ 410 (891)
+ .. .+.- .....++.++...+..+ .|.++..+..++.+.+ ...+.
T Consensus 260 -------------------------~-~~--~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d---~~~~~ 308 (503)
T PF10508_consen 260 -------------------------R-LS--SLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQD---PTIRE 308 (503)
T ss_pred -------------------------c-cc--chhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC---hhHHH
Confidence 0 00 1111 22356666666533333 4667777777777888 99999
Q ss_pred HHHHHHHHHhhcchh--hh----hhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHH--
Q 002697 411 AAVLALGAIAEGCIK--GL----YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM-- 482 (891)
Q Consensus 411 aa~~~l~~l~~~~~~--~~----~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-- 482 (891)
+|+-++|.++..... .+ .+.+..++..+..........+|.++..+++.+....... .+.......+..+.
T Consensus 309 ~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~-~~~~i~~~~~~w~~~~ 387 (503)
T PF10508_consen 309 VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDR-QDNDILSITESWYESL 387 (503)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHh
Confidence 999999999854321 12 2345566777777777888899999999999986432210 00000011111111
Q ss_pred -------HHHHHhcCCCHHHHHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHH
Q 002697 483 -------GLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (891)
Q Consensus 483 -------~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~ 550 (891)
.++..++.+-+.+|.++...+..++..- ...+. -.+.+++.+++--...+...+..=++++..++++
T Consensus 388 ~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~-~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 388 SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREIC-SSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHH-hCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 4445556666889999999998887642 11111 1233444433322222223344446666666654
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.1e-08 Score=106.79 Aligned_cols=425 Identities=13% Similarity=0.117 Sum_probs=268.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHh-cCCChH-HHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHH
Q 002697 17 ICRLLEQQISPSSTADKSQIWQQLQQYS-QFPDFN-NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (891)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~-~~p~~~-~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i 94 (891)
|-++.++..+.+.+ ++|-+.-+|-+|. ++|+.. ..+..+-..-.+.++.+|..|.-.|- .-+-..+.+- +
T Consensus 73 Fp~VVKNVaskn~E-VKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlS---sIRvp~IaPI----~ 144 (968)
T KOG1060|consen 73 FPAVVKNVASKNIE-VKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLS---SIRVPMIAPI----M 144 (968)
T ss_pred HHHHHHHhhccCHH-HHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHH---hcchhhHHHH----H
Confidence 55667777788888 9999999999986 478742 22222222223678899988865441 1111122222 2
Q ss_pred HHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCC
Q 002697 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (891)
Q Consensus 95 ~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~ 174 (891)
.-.+-++..|+.+.||+.+|.+|-++-+.++. .-++|...+..++.+.++.+.-.|..++..+|-+--+
T Consensus 145 llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e-~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerld---------- 213 (968)
T KOG1060|consen 145 LLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE-QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLD---------- 213 (968)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh-hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHH----------
Confidence 22333456789999999999999999887744 4459999999999999999999999988766653322
Q ss_pred CcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcc-cchh----------------------------hHHhHHHHHHH
Q 002697 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML-MPSA----------------------------LFVSMDQYLQG 225 (891)
Q Consensus 175 ~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~-~~~~----------------------------~~~~~~~~l~~ 225 (891)
.+..-+..+++++.+-+.-=+...+..|..++.. +++. ..+.+..+++.
T Consensus 214 --LIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~s 291 (968)
T KOG1060|consen 214 --LIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQS 291 (968)
T ss_pred --HhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHh
Confidence 2344466777788776666677777788777643 1110 11223455666
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhh
Q 002697 226 LFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPR 305 (891)
Q Consensus 226 l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~ 305 (891)
.-.++.+.++.|..++++++-.++... ....+++.+++.+.+. .+++...+..+..++.. .+..+.||+..
T Consensus 292 tkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~--~~~lF~P~lKs 362 (968)
T KOG1060|consen 292 TKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRSN-REVQYVVLQNIATISIK--RPTLFEPHLKS 362 (968)
T ss_pred ccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhc--chhhhhhhhhc
Confidence 666777778888888888777665432 2334555566555543 33566666666666655 55677777765
Q ss_pred hHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcc
Q 002697 306 LVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE 385 (891)
Q Consensus 306 li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~ 385 (891)
.+ ++ .. | .-.....-|..|+......
T Consensus 363 Ff-------------------------------v~-----ss---------D---------p~~vk~lKleiLs~La~es 388 (968)
T KOG1060|consen 363 FF-------------------------------VR-----SS---------D---------PTQVKILKLEILSNLANES 388 (968)
T ss_pred eE-------------------------------ee-----cC---------C---------HHHHHHHHHHHHHHHhhhc
Confidence 21 11 00 0 1123344455555555566
Q ss_pred hhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHh
Q 002697 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (891)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 465 (891)
-+..++.-++.++.+.+ -..-.+++.++|.++... ...-+..+..++..+.+.+..|-..+...+.++...-
T Consensus 389 ni~~ILrE~q~YI~s~d---~~faa~aV~AiGrCA~~~----~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~- 460 (968)
T KOG1060|consen 389 NISEILRELQTYIKSSD---RSFAAAAVKAIGRCASRI----GSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD- 460 (968)
T ss_pred cHHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHhh----CchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC-
Confidence 67788899999999887 555556666677666533 3344556777788888878888888888888776632
Q ss_pred hhhCCCcchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHH
Q 002697 466 QDIGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAI 544 (891)
Q Consensus 466 ~~~~~~~~~~~~~~~l~~l~~~l~d~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al 544 (891)
+.....++..+.+.+..- -+.-|....|.++..++.. ....+.++..+.+.+.+....++..++...
T Consensus 461 --------p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~v----pri~PDVLR~laksFs~E~~evKlQILnL~ 528 (968)
T KOG1060|consen 461 --------PAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIV----PRIAPDVLRKLAKSFSDEGDEVKLQILNLS 528 (968)
T ss_pred --------hHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhc----chhchHHHHHHHHhhccccchhhHHHHHhh
Confidence 233344555666555321 2445666677777776642 223467777777777776666665555444
Q ss_pred H
Q 002697 545 G 545 (891)
Q Consensus 545 ~ 545 (891)
.
T Consensus 529 a 529 (968)
T KOG1060|consen 529 A 529 (968)
T ss_pred h
Confidence 3
No 56
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.29 E-value=1.4e-08 Score=111.58 Aligned_cols=392 Identities=16% Similarity=0.131 Sum_probs=232.6
Q ss_pred HHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcc
Q 002697 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (891)
Q Consensus 394 l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 473 (891)
+...+++.+ ...-..++.+|..+..... .....+++.+.+...+.++++.||.-+++.++++...-.... .
T Consensus 43 lf~~L~~~~---~e~v~~~~~iL~~~l~~~~--~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~----~ 113 (503)
T PF10508_consen 43 LFDCLNTSN---REQVELICDILKRLLSALS--PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAA----Q 113 (503)
T ss_pred HHHHHhhcC---hHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHH----H
Confidence 444455444 5555666667777665332 223377788999999999999999999999999876432210 0
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHh-HHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhc
Q 002697 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR-LEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (891)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~-l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~ 552 (891)
.-.-..+++.++.++.+++..|...|+.+|..++..- ..+... -+..+..|.+.+.+.+..++..+++++..++....
T Consensus 114 ~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred HhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH
Confidence 1112468889999999999999999999999998642 111111 11226777777777666666677887777765433
Q ss_pred ccCCchhhhh--hhhHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccC
Q 002697 553 FELNQPVYLD--ILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAG 629 (891)
Q Consensus 553 ~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~ 629 (891)
+.+ .+.. .+++.++..+.+ +|.-+ .+++++++.++
T Consensus 193 ~~~---~~~~~sgll~~ll~eL~~---dDiLvqlnalell~~La------------------------------------ 230 (503)
T PF10508_consen 193 EAA---EAVVNSGLLDLLLKELDS---DDILVQLNALELLSELA------------------------------------ 230 (503)
T ss_pred HHH---HHHHhccHHHHHHHHhcC---ccHHHHHHHHHHHHHHH------------------------------------
Confidence 222 1222 133333333332 22222 34444444444
Q ss_pred CCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcC----C-ChHHH-HHHHHHHhHHHHhchHhhHHhHH
Q 002697 630 AQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD----D-ASDVR-QSAFALLGDLARVCPVHLQARLS 703 (891)
Q Consensus 630 ~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~----~-~~~vr-~~a~~~l~~l~~~~~~~~~~~~~ 703 (891)
. ......|+.+..+++.+...+.+ + ...+. -..+..+|.++...+..+..-.+
T Consensus 231 -------------------~--~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p 289 (503)
T PF10508_consen 231 -------------------E--TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYP 289 (503)
T ss_pred -------------------c--ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHH
Confidence 3 12222222222244444433322 2 11111 23346677777766666777778
Q ss_pred HHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchh-h-----hhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHh
Q 002697 704 DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ-E-----ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLG 777 (891)
Q Consensus 704 ~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~-~-----~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~ 777 (891)
.++..+...+++. +...+..|..++|.++..... . ..+-+..++..+.....++. .+++-++..+++
T Consensus 290 ~~~~~l~~~~~s~----d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~---~~lk~r~l~al~ 362 (503)
T PF10508_consen 290 AFLERLFSMLESQ----DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS---TELKLRALHALA 362 (503)
T ss_pred HHHHHHHHHhCCC----ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCc---hHHHHHHHHHHH
Confidence 8888888877776 678899999999999854421 1 23445666766666666553 578888999999
Q ss_pred hhhhhcCCccCcchhHHHHHHHhhccCCCC------------chHHHHHHHHHHHHHhhCh-hhhHhhHHHHhhHhhccc
Q 002697 778 RLAWVCPELVSPHMEHFMQPWCIALSMIRD------------DTEKEDAFRGLCAMVKANP-SGALSSLVFMCRAIASWH 844 (891)
Q Consensus 778 ~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~------------~~e~~~~~~~l~~l~~~~~-~~~~~~l~~~~~~~~~~~ 844 (891)
.+....++.-...+..+...|++.+..... .|-|..+++.+..++.+.= ....-.-+.+++-+++-.
T Consensus 363 ~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~ 442 (503)
T PF10508_consen 363 SILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRS 442 (503)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCC
Confidence 998655543333455677888887655332 2234455555555555421 112244556666666533
Q ss_pred ccCchhHHHHHHHHHHHHHhh
Q 002697 845 EIRSEELHNEVCQVLHGYKQM 865 (891)
Q Consensus 845 ~~~~~~~~~~~~~~l~~~~~~ 865 (891)
..+..+.++.=.+++..+.+.
T Consensus 443 ~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 443 TETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 333445666666777766654
No 57
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.27 E-value=2.8e-07 Score=103.28 Aligned_cols=222 Identities=16% Similarity=0.128 Sum_probs=142.9
Q ss_pred CCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhh-----hc-----CChHHHHHHHHHHHHHHhhcccCchHH
Q 002697 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL-----GA-----ADRHIRSTVGTIVSVVVQLGGIAGWLE 131 (891)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L-----~~-----~~~~vr~~~a~~l~~i~~~~~~~~w~~ 131 (891)
+...++||-|++.++..+..+...++-+..+.+.-.++..+ .+ -...||.+.|++++...+........+
T Consensus 88 ~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~~~ 167 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLIKE 167 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhhHH
Confidence 56789999999999999999888877766665555555433 12 134799999999999999877777778
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhccc
Q 002697 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (891)
Q Consensus 132 ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (891)
.++.+.+.+..+++..|++++..+...+....+.+ ...++.+++.+.+++++.+..||..|...+.......
T Consensus 168 ~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l--------~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 168 TLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLL--------FQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HHHHHHHHHcCcchhheechHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence 88899999999999999999998866555222221 1345677888999999999999999998887776554
Q ss_pred chhhHHhHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHHhhC-h-hhhh-HhH-HHHHHHHHhhcCCCCHHHHHHHHH
Q 002697 212 PSALFVSMDQYLQGLFLLSND---PSAEVRKLVCAAFNLLIEVR-P-SFLE-PHL-RNLFEYMLQVNKDTDDDVALEACE 284 (891)
Q Consensus 212 ~~~~~~~~~~~l~~l~~~~~~---~~~~v~~~~~~~l~~l~~~~-~-~~~~-~~l-~~l~~~~~~~~~~~~~~v~~~a~~ 284 (891)
+......+..++..++..+.. -.+.. ......+..++... . +.+. ... ..+++..+..+.+.-..++..+++
T Consensus 240 v~l~~~~i~~lv~~l~~~l~~lddl~~s~-~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~ 318 (1549)
T KOG0392|consen 240 VKLMVQKIAKLVHTLWSFLLELDDLSSST-ASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALE 318 (1549)
T ss_pred HhhhHhHHHHHHHHHHHHHHHhhhcchhh-HHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 333334455555555553321 11110 11111122221110 0 0000 000 123333444444445567888899
Q ss_pred HHHHhhcc
Q 002697 285 FWHSYFEA 292 (891)
Q Consensus 285 ~l~~l~~~ 292 (891)
++..+.+.
T Consensus 319 ~l~~lle~ 326 (1549)
T KOG0392|consen 319 TLAMLLEA 326 (1549)
T ss_pred HHHHHHhc
Confidence 98888776
No 58
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-05 Score=89.11 Aligned_cols=428 Identities=16% Similarity=0.188 Sum_probs=225.9
Q ss_pred ccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccC-CCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC
Q 002697 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSAS-GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (891)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 443 (891)
..+|-.|++.+++++...+......++.-+...++-. ++..|. +|+.+|+.++..-- .+...++.++|.+.+.+.
T Consensus 355 t~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~rGl-Llps~l~dVvplI~kaL~ 430 (1133)
T KOG1943|consen 355 TVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALRGL-LLPSLLEDVVPLILKALH 430 (1133)
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhh
Confidence 3578889999999999998766556665555544321 212255 99999999986321 223467788998888775
Q ss_pred C--------CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhc---
Q 002697 444 D--------KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK-RILDTNKRVQEAACSAFATLEEEAA--- 511 (891)
Q Consensus 444 d--------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~l~d~~~~v~~~a~~al~~l~~~~~--- 511 (891)
- ....||.+||..+-.|+.... |....+++..+...++. .+=|++..+|.+|..|+...+..-+
T Consensus 431 Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays----~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p 506 (1133)
T KOG1943|consen 431 YDVRRGQHSVGQHVRDAACYVCWAFARAYS----PSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFP 506 (1133)
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhcCC----hhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCC
Confidence 2 345799999888777776553 23456667767776654 3458888999999999876653210
Q ss_pred ----------------------------ccchHhHHHHHHHHHHH-HcccchhHHHHHHHHHHHHHHHhcccCCchhhhh
Q 002697 512 ----------------------------EELAPRLEIILQHLMMA-FGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLD 562 (891)
Q Consensus 512 ----------------------------~~~~~~l~~il~~l~~~-l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~ 562 (891)
..+..|...+++.++.. +...+...+..+..++..+...-.+.+. +
T Consensus 507 ~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a-----~ 581 (1133)
T KOG1943|consen 507 HGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLA-----D 581 (1133)
T ss_pred CchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhc-----c
Confidence 12333455566655544 5556667777888888887765443322 2
Q ss_pred hhhHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCch---hH-H
Q 002697 563 ILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDK---EF-V 637 (891)
Q Consensus 563 ~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~---~~-~ 637 (891)
..+|+++...... +... ....-..+.+..+...- .|....+.+.-++.+.+....-.+ ..+.+ ++ +
T Consensus 582 ~~L~~lld~~ls~---~~~~r~g~~la~~ev~~~~~~l-~~~~~~l~e~~i~~l~~ii~~~~~-----~~~~rg~~~lmr 652 (1133)
T KOG1943|consen 582 YVLPPLLDSTLSK---DASMRHGVFLAAGEVIGALRKL-EPVIKGLDENRIAGLLSIIPPICD-----RYFYRGQGTLMR 652 (1133)
T ss_pred cchhhhhhhhcCC---ChHHhhhhHHHHHHHHHHhhhh-hhhhhhhHHHHhhhhhhhccHHHH-----HHhccchHHHHH
Confidence 4455555544332 2222 23333344444333221 121222222222211100000000 00011 11 1
Q ss_pred HHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCC
Q 002697 638 VCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPK 717 (891)
Q Consensus 638 ~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 717 (891)
.+....+..+...-..-+..++- .....++..+.++.+ .+|+.|+..+++++..+-..=...-..++...+..+.+..
T Consensus 653 ~~~~~~Ie~~s~s~~~~~~~~v~-e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~ 730 (1133)
T KOG1943|consen 653 QATLKFIEQLSLSKDRLFQDFVI-ENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCS 730 (1133)
T ss_pred HHHHHHHHHhhhccchhHHHHHH-HHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCch
Confidence 12222222211110111111221 124445555554445 8999999999999876531111111135555555555542
Q ss_pred CcCchhHhhhHHHHHHHHHHhchhhhh-hHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCc-cCcchhHHH
Q 002697 718 LKETVSVANNACWAIGELAVKARQEIS-PIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPEL-VSPHMEHFM 795 (891)
Q Consensus 718 ~~~~~~v~~~a~~alg~l~~~~~~~~~-~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~l 795 (891)
++.+|....-++|.+-... +. ++-+.+.+.++...... . ....|.+.+.++.++....... ......++.
T Consensus 731 ---~~~~r~g~~lal~~lp~~~---i~~~~q~~lc~~~l~~~p~d-~-~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~ 802 (1133)
T KOG1943|consen 731 ---EERIRRGLILALGVLPSEL---IHRHLQEKLCKLVLELLPSD-A-WAEARQQNVKALAHVCKTVTSLLFSESIEKFR 802 (1133)
T ss_pred ---HHHHHHHHHHHHccCcHHh---hchHHHHHHHHHHhccCccc-c-cHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 4566766666666654211 11 12222233333322221 1 3456777777887777654422 233467788
Q ss_pred HHHHhhccCCC-----Cc--hHHHHHHHHHHHHHhh
Q 002697 796 QPWCIALSMIR-----DD--TEKEDAFRGLCAMVKA 824 (891)
Q Consensus 796 ~~~~~~l~~~~-----~~--~e~~~~~~~l~~l~~~ 824 (891)
..++++|.+.. |- =.|+.|++++..+...
T Consensus 803 e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~ 838 (1133)
T KOG1943|consen 803 ETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDT 838 (1133)
T ss_pred HHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhh
Confidence 88888886622 11 1466788887766554
No 59
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.22 E-value=1.9e-10 Score=109.74 Aligned_cols=352 Identities=15% Similarity=0.155 Sum_probs=215.5
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHHHhh-chhccccCCCCCCCcchhhhHHHHHHhhcC-CCHHHHHHHHHHHHHHhccc
Q 002697 134 QALVTCLDSNDINHMEGAMDALSKICED-IPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLM 211 (891)
Q Consensus 134 ~~L~~~l~~~~~~~r~~al~~L~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~~~~ 211 (891)
|.+.+.+.+++......|..-+.++... -.+-+.. -.-...+|.+++++.+ ...-.+-.|.-++.++...-
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~-------VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQP-------VIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchh-------HHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence 6666666777777777777666655432 1111110 1124568899999954 34455667778888877543
Q ss_pred chhhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHH--HHHHHHHhhcCCCC--HHHHHHHHHHH
Q 002697 212 PSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTD--DDVALEACEFW 286 (891)
Q Consensus 212 ~~~~~~~~-~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~--~~v~~~a~~~l 286 (891)
...-.-.+ ..-++.+++++.+++.+||.++.-+|+.++...+.. ..|+- ..++.++..+.++. -.+.+.+.-.+
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~-RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC-RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH-HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Confidence 22110000 123667777888889999999999999988654432 22221 23344444444433 34556667778
Q ss_pred HHhhccC---CchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccc
Q 002697 287 HSYFEAQ---LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVN 363 (891)
Q Consensus 287 ~~l~~~~---~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~ 363 (891)
+.+++.+ ..+..+. +.+|.+...+ ++. |.
T Consensus 226 SNlcRGknP~P~w~~is----qalpiL~KLi-ys~-D~------------------------------------------ 257 (526)
T COG5064 226 SNLCRGKNPPPDWSNIS----QALPILAKLI-YSR-DP------------------------------------------ 257 (526)
T ss_pred HHhhCCCCCCCchHHHH----HHHHHHHHHH-hhc-CH------------------------------------------
Confidence 8888762 2344443 3444433222 111 00
Q ss_pred cccHHHHHHHHHHHHHHHcCc---chh-hhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHH-HHHHHH
Q 002697 364 VWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFL 438 (891)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~-~i~~~l 438 (891)
.+-.-|..+++.++..-.+ .++ ..+.+.+.+.+.+++ ....--|+..+|.+..|....-.-.+. ..++.+
T Consensus 258 --evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s---a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~ 332 (526)
T COG5064 258 --EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES---AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAF 332 (526)
T ss_pred --HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc---ccccCHHHHhhcCeeecCccceehheecccHHHH
Confidence 0233466666666543321 112 124456777888887 888888999999998876543222222 245666
Q ss_pred hhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--cccchH
Q 002697 439 IPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAP 516 (891)
Q Consensus 439 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~~~~ 516 (891)
...|.++...+|+.|||+++++...-.+. ...-.-..++|.|++.|...+-.++..||||+.+....+ .+.+..
T Consensus 333 ~~lLs~~ke~irKEaCWTiSNITAGnteq----iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ir 408 (526)
T COG5064 333 RSLLSSPKENIRKEACWTISNITAGNTEQ----IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIR 408 (526)
T ss_pred HHHhcChhhhhhhhhheeecccccCCHHH----HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHH
Confidence 66788998999999999999987543322 112223467888999998877889999999999987765 344445
Q ss_pred hH--HHHHHHHHHHHcccchhHHHHHHHHHHHHHHH
Q 002697 517 RL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (891)
Q Consensus 517 ~l--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~ 550 (891)
|+ ...+..|...|.-.+.+....+++++..+.+.
T Consensus 409 yLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 409 YLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred HHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence 54 34566677777777777777778888776653
No 60
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=7.7e-07 Score=95.18 Aligned_cols=493 Identities=16% Similarity=0.139 Sum_probs=257.8
Q ss_pred HhhhhhcC-ChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCc
Q 002697 98 LLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (891)
Q Consensus 98 ll~~L~~~-~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~ 176 (891)
|.+.|.+. +...+.+.-.+++.|++.. .-..++|.+.+...+.+.++++.....|-..+|.-++..
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~---dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA---------- 106 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGK---DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA---------- 106 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce----------
Confidence 44566654 6667777777888888754 467899999999999999998877766666666433311
Q ss_pred chhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhh
Q 002697 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (891)
Q Consensus 177 ~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~ 256 (891)
=--+..+-+.|.|+++-+|..|++++..+--.+ + .+.+|-.+.++..|+++-||+.|.-++..+-...++.-
T Consensus 107 --LLSIntfQk~L~DpN~LiRasALRvlSsIRvp~---I---aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 107 --LLSINTFQKALKDPNQLIRASALRVLSSIRVPM---I---APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred --eeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhh---H---HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 011567788999999999999999998874221 1 23346677778899999999999999999988777653
Q ss_pred hHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhccc---CCCC
Q 002697 257 EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEED---ESLP 333 (891)
Q Consensus 257 ~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~---~~~~ 333 (891)
. ++++.+-..+.|.++-|.-.|.-.+..+|-. ....+.+++..+...+. |.+.|.---- -...
T Consensus 179 ~----qL~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLIHknyrklC~ll~--------dvdeWgQvvlI~mL~RY 244 (968)
T KOG1060|consen 179 D----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLIHKNYRKLCRLLP--------DVDEWGQVVLINMLTRY 244 (968)
T ss_pred H----HHHHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHhhHHHHHHHhhcc--------chhhhhHHHHHHHHHHH
Confidence 2 4555555567777777766665555555433 33444455554443331 1111210000 0000
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHH-cC---cchhhhhHHHHHHhhccCCCcchHHH
Q 002697 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV-FG---DEILPTLMPVIQAKLSASGDEAWKDR 409 (891)
Q Consensus 334 ~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~-~~---~~~~~~l~~~l~~~l~~~~~~~~~~r 409 (891)
-+.+..+|.... +..+ ++. |.+-.... .+.. .| +.-+..+++.....+.+.+ +.+-
T Consensus 245 AR~~l~~P~~~~------~~~e-~n~--------~~~~~~~~--~~~~~~P~~~d~D~~lLL~stkpLl~S~n---~sVV 304 (968)
T KOG1060|consen 245 ARHQLPDPTVVD------SSLE-DNG--------RSCNLKDK--YNEIRTPYVNDPDLKLLLQSTKPLLQSRN---PSVV 304 (968)
T ss_pred HHhcCCCccccc------cccc-cCc--------cccccccc--ccccCCCcccCccHHHHHHhccHHHhcCC---cHHH
Confidence 000011110000 0000 000 00000000 0000 01 1112234444455555655 6666
Q ss_pred HHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhc
Q 002697 410 EAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (891)
Q Consensus 410 ~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 489 (891)
.|++.++-.++... ....+...++..|.. ++.++...+..+..++..- +..|.+.+..++-.-.
T Consensus 305 mA~aql~y~lAP~~------~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~---------~~lF~P~lKsFfv~ss 368 (968)
T KOG1060|consen 305 MAVAQLFYHLAPKN------QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKR---------PTLFEPHLKSFFVRSS 368 (968)
T ss_pred HHHHhHHHhhCCHH------HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcc---------hhhhhhhhhceEeecC
Confidence 66666555555321 223344444444433 4556666666666665532 2223333333322222
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHH
Q 002697 490 DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLI 569 (891)
Q Consensus 490 d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~ 569 (891)
|+ ..+..-=...|.+++... .+..|++.+...+...+......+..+||..+...+ ..-+..|..|+
T Consensus 369 Dp-~~vk~lKleiLs~La~es------ni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~------sv~~tCL~gLv 435 (968)
T KOG1060|consen 369 DP-TQVKILKLEILSNLANES------NISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG------SVTDTCLNGLV 435 (968)
T ss_pred CH-HHHHHHHHHHHHHHhhhc------cHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC------chhhHHHHHHH
Confidence 32 223333333444444322 234556666666665555444456667776666554 34556777777
Q ss_pred HHHHcCCCCCcchHhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHH
Q 002697 570 AKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAE 649 (891)
Q Consensus 570 ~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~ 649 (891)
..+.+.. ...+......+..+...-+.. ..+++..+.+.++.-. -+..|.+++-++|..++
T Consensus 436 ~Llsshd--e~Vv~eaV~vIk~Llq~~p~~----h~~ii~~La~lldti~-------------vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 436 QLLSSHD--ELVVAEAVVVIKRLLQKDPAE----HLEILFQLARLLDTIL-------------VPAARAGIIWLIGEYCE 496 (968)
T ss_pred HHHhccc--chhHHHHHHHHHHHHhhChHH----HHHHHHHHHHHhhhhh-------------hhhhhceeeeeehhhhh
Confidence 7776531 122233333343333322111 1223444444443211 22334444555544443
Q ss_pred HHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhH
Q 002697 650 GLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ 699 (891)
Q Consensus 650 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 699 (891)
... .+. |.++..+...+.++..++|-..+.+...+.....+.+.
T Consensus 497 ~vp----ri~--PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~~k 540 (968)
T KOG1060|consen 497 IVP----RIA--PDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQTK 540 (968)
T ss_pred hcc----hhc--hHHHHHHHHhhccccchhhHHHHHhhhhheEechhhHH
Confidence 311 111 45888888889999999988777766666555444443
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=6.3e-07 Score=96.36 Aligned_cols=468 Identities=13% Similarity=0.110 Sum_probs=262.2
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHh
Q 002697 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (891)
Q Consensus 109 vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 188 (891)
.-+.++...+.+.-.+..+-.--+.+.|.+-+++++.-+.-.|+.+|+.++. .. -.+.+.|.+.+.
T Consensus 85 ~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s---~E-----------mardlapeVe~L 150 (866)
T KOG1062|consen 85 LDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS---PE-----------MARDLAPEVERL 150 (866)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC---HH-----------HhHHhhHHHHHH
Confidence 3333444444444333221222233555555667777788888888877664 21 237789999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhh---hHhHHHHHH
Q 002697 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL---EPHLRNLFE 265 (891)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~---~~~l~~l~~ 265 (891)
+++.++.+|+.|+-|...++...|+-. +.|++..-+++.+.+..|....+..+..+++..++.+ ....+.++.
T Consensus 151 l~~~~~~irKKA~Lca~r~irK~P~l~----e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~ 226 (866)
T KOG1062|consen 151 LQHRDPYIRKKAALCAVRFIRKVPDLV----EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVK 226 (866)
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCchHH----HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876533 3345556666777777787778888888888766543 333344444
Q ss_pred HHHhhcCC-----------CCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCC
Q 002697 266 YMLQVNKD-----------TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (891)
Q Consensus 266 ~~~~~~~~-----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~ 334 (891)
.+.+.... +|+-.+..++.++.-+.+.. .+ ....+.+++..+ ...++..
T Consensus 227 iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d--~d-aSd~M~DiLaqv---atntdss-------------- 286 (866)
T KOG1062|consen 227 ILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND--AD-ASDLMNDILAQV---ATNTDSS-------------- 286 (866)
T ss_pred HHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC--cc-HHHHHHHHHHHH---Hhccccc--------------
Confidence 44333221 35556777777776665541 11 111112221111 1111100
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccccccH-HHHHHHHHHHHHHHcCc-chhhhhHHHHHHhhccCCCcchHHHHHH
Q 002697 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL-RKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAA 412 (891)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~-r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aa 412 (891)
-++ -..-.+|+..+....++ ....-.++.+-+++.+.+ -..|+.|
T Consensus 287 ------------------------------kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d---~NirYva 333 (866)
T KOG1062|consen 287 ------------------------------KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD---NNIRYVA 333 (866)
T ss_pred ------------------------------ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc---cceeeee
Confidence 000 01123444444444433 333344566667777777 7788888
Q ss_pred HHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCC
Q 002697 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN 492 (891)
Q Consensus 413 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~ 492 (891)
+..|..+...-+.....|- ..++.+++|+++.+|..|+...-.+.. ...+..++..++..|...+
T Consensus 334 Ln~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn-----------~~Nv~~mv~eLl~fL~~~d 398 (866)
T KOG1062|consen 334 LNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVN-----------ESNVRVMVKELLEFLESSD 398 (866)
T ss_pred hhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhc-----------cccHHHHHHHHHHHHHhcc
Confidence 8888877765544444443 346778999999999999887766543 4566788888888887778
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHH
Q 002697 493 KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKW 572 (891)
Q Consensus 493 ~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l 572 (891)
...+..+..-+..+++...+.=.-|++.++..+..+=+-...++.. ..+..++.+.++.-. --...+...+....
T Consensus 399 ~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~---nll~LIa~~~~e~~~--y~~~rLy~a~~~~~ 473 (866)
T KOG1062|consen 399 EDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVN---NLLRLIANAFQELHE--YAVLRLYLALSEDT 473 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHH---HHHHHHhcCCcchhh--HHHHHHHHHHhhhh
Confidence 8899999988888888876655667766654443322211222221 222222223232211 11122222222211
Q ss_pred HcCCCCCcchHhHHHHHHHHHHHh--c---ccc-ccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHH
Q 002697 573 QQLPNSDKDLFPLLECFTSIAQAL--G---AGF-TQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSG 646 (891)
Q Consensus 573 ~~~~~~~~~~~~~~~~l~~i~~~~--~---~~~-~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~ 646 (891)
.....+.+-+.-+..|+|.-+..+ | ++. ..--..++..+.+.+.... .+...+..++.++-.
T Consensus 474 ~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~------------s~~~tk~yal~Al~K 541 (866)
T KOG1062|consen 474 LLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHS------------SDSTTKGYALTALLK 541 (866)
T ss_pred hhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhcc------------chHHHHHHHHHHHHH
Confidence 001111222356777877766322 1 111 1112344454444444322 134455556666655
Q ss_pred HHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHH
Q 002697 647 LAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFA 685 (891)
Q Consensus 647 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~ 685 (891)
+...++.. .+ .+-.++..+..+-+-+++|.|+.
T Consensus 542 LSsr~~s~----~~--ri~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 542 LSSRFHSS----SE--RIKQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred HHhhcccc----HH--HHHHHHHHhcccccHHHHHHHHH
Confidence 55554443 22 26666666666677888888877
No 62
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.17 E-value=2.9e-10 Score=108.53 Aligned_cols=317 Identities=11% Similarity=0.154 Sum_probs=192.4
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHHHHhh-cchhhhhhhHH-HHHHHHhhhc-CCCChHHHHHHHHHHHhhHHHHhhhh
Q 002697 392 PVIQAKLSASGDEAWKDREAAVLALGAIAE-GCIKGLYPHLS-EIVAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDI 468 (891)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~-~~~~~~~~~l~-~i~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~ 468 (891)
|.+.+.+.+.+ ......|..-+..+.. .....+.+.+. .++|.++..+ ...+...+..|+|++.+++......
T Consensus 74 p~lt~~l~SdD---ie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q- 149 (526)
T COG5064 74 PQLTQQLFSDD---IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ- 149 (526)
T ss_pred HHHHHHHhhhH---HHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc-
Confidence 55555555555 6666666555554432 22222333333 2677777777 4566688889999999998764321
Q ss_pred CCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHcccch--hHHHHHHHHH
Q 002697 469 GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQR--RNLRIVYDAI 544 (891)
Q Consensus 469 ~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~il~~l~~~l~~~~~--~~~~~~~~al 544 (891)
.....-...+|.+++.|.+++..||+.+.|||++++... +....|+ ...++.++.++..... ...+.+..++
T Consensus 150 ---TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS-~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 150 ---TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS-EGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred ---eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCc-hhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Confidence 111112356788899999999999999999999997542 1122222 1234555556654433 4566888999
Q ss_pred HHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHhccccccchH-HHHHHHHHHHHHHHHHh
Q 002697 545 GTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQ-PVFQRCINIIQTQQLAK 622 (891)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~ 622 (891)
+.+++.-.+.-.. ..+.+.+|.|.+.+.. .|+++ ..++-+++++...-.+.....++ .+.++++..|.+.
T Consensus 226 SNlcRGknP~P~w-~~isqalpiL~KLiys---~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~---- 297 (526)
T COG5064 226 SNLCRGKNPPPDW-SNISQALPILAKLIYS---RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE---- 297 (526)
T ss_pred HHhhCCCCCCCch-HHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc----
Confidence 9999864443211 4567788888777665 34444 56666677665433222211111 1344555555532
Q ss_pred hcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhH
Q 002697 623 VDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL 702 (891)
Q Consensus 623 ~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 702 (891)
+..+..-++..++.++.+......-++.- .+++.+...++++...+|..|+..++.+.....+++...+
T Consensus 298 ----------sa~iqtPalR~vGNIVTG~D~QTqviI~~-G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavi 366 (526)
T COG5064 298 ----------SAKIQTPALRSVGNIVTGSDDQTQVIINC-GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVI 366 (526)
T ss_pred ----------cccccCHHHHhhcCeeecCccceehheec-ccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHH
Confidence 22222234455666655433333223322 2444444446677779999999999999877766666555
Q ss_pred H-HHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhc
Q 002697 703 S-DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (891)
Q Consensus 703 ~-~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~ 739 (891)
+ .++|.++..|... ....|..||||+......+
T Consensus 367 d~nliPpLi~lls~a----e~k~kKEACWAisNatsgg 400 (526)
T COG5064 367 DANLIPPLIHLLSSA----EYKIKKEACWAISNATSGG 400 (526)
T ss_pred hcccchHHHHHHHHH----HHHHHHHHHHHHHhhhccc
Confidence 4 6788888888776 5688999999999876443
No 63
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2e-07 Score=100.35 Aligned_cols=422 Identities=16% Similarity=0.161 Sum_probs=241.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhc-CCChH-HHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccC-ChhhHHH
Q 002697 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFN-NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM-SPSNQQY 93 (891)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~~-~p~~~-~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~-~~~~~~~ 93 (891)
+-.++......|-+ ..|-...++..|.+ .|+-. ..+..++.+-++.++.+|..|.-.+ ..+ .+....+
T Consensus 51 F~dvvk~~~T~dle-lKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm--------~~l~v~~i~ey 121 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLE-LKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTM--------GCLRVDKITEY 121 (734)
T ss_pred hHHHHhhcccCCch-HHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhce--------eeEeehHHHHH
Confidence 33444455555666 88999999998865 77743 3444455444678899999987443 112 2344567
Q ss_pred HHHhHhhhhhcCChHHHHHHHHHHHHHHhhccc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCC
Q 002697 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (891)
Q Consensus 94 i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~ 172 (891)
+.+.+..++.+.++.+|+.++.+++.+....+. .+-..+++.|..++.+++|.+...|+.+|..|.+.-+.....
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~---- 197 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL---- 197 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc----
Confidence 788899999999999999999999998877643 233568888999999999999999999999998865431111
Q ss_pred CCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 002697 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (891)
Q Consensus 173 ~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~ 252 (891)
.....+...++..+..-+..-+...++++..+....+ .....+++.+...++..++.+...+.+.+..+....
T Consensus 198 ---~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~----~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 198 ---ELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS----REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred ---cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc----hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 1224455556665555555556666666666654332 223345666666666666666666666666666554
Q ss_pred hhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHH------------hhhhhh--HHHHHhhccCCh
Q 002697 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK------------EFLPRL--VPVLLSNMIYAD 318 (891)
Q Consensus 253 ~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~------------~~l~~l--i~~ll~~l~~~~ 318 (891)
+..-...+..+-+.++..+.... ++...|+.-+.-+... .++.++ |..-++ +.++.. +....
T Consensus 271 ~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~--~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~-la~~~ 346 (734)
T KOG1061|consen 271 KQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQK--RPEILKVEIKVFFCKYNDPIYVKLEKLEILIE-LANDA 346 (734)
T ss_pred HHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHh--ChHHHHhHhHeeeeecCCchhhHHHHHHHHHH-HhhHh
Confidence 44323333444444444443333 4444444333322222 011100 100000 000000 00000
Q ss_pred hhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhh
Q 002697 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKL 398 (891)
Q Consensus 319 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l 398 (891)
.-.+...+ ..++..+- +-.+-+.++.+++.++....+. ..++..+...+
T Consensus 347 nl~qvl~E---------------------------l~eYatev--D~~fvrkaIraig~~aik~e~~--~~cv~~lLell 395 (734)
T KOG1061|consen 347 NLAQVLAE---------------------------LKEYATEV--DVDFVRKAVRAIGRLAIKAEQS--NDCVSILLELL 395 (734)
T ss_pred HHHHHHHH---------------------------HHHhhhhh--CHHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHH
Confidence 00000000 00000000 0113456888888888887664 34444444444
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC-CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH
Q 002697 399 SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF 477 (891)
Q Consensus 399 ~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 477 (891)
.-..+ .-+. .++..+..+...++. ..+.+++.+...+.. .+|..|.+-.|.+|++++.+.. .
T Consensus 396 ~~~~~--yvvq-E~~vvi~dilRkyP~----~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~----------a 458 (734)
T KOG1061|consen 396 ETKVD--YVVQ-EAIVVIRDILRKYPN----KYESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN----------A 458 (734)
T ss_pred hhccc--ceee-ehhHHHHhhhhcCCC----chhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc----------H
Confidence 42220 2222 333445555554443 224456655555544 5788999999999999987653 3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 002697 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (891)
Q Consensus 478 ~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (891)
..++..+++.+.|....||..-..|..++.-..
T Consensus 459 ~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 459 LELLESFLENFKDETAEVQLELLTAAIKLFLKK 491 (734)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHhcC
Confidence 577788888888888888888777666655443
No 64
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.06 E-value=0.00012 Score=84.94 Aligned_cols=141 Identities=18% Similarity=0.253 Sum_probs=101.6
Q ss_pred HHhHhhhhhcCChHHHHHHHHHHHHHHhhccc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCC
Q 002697 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (891)
Q Consensus 95 ~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (891)
...++..++++...+|..+-.|++.|+..++. -.-|++-..+..-+.+....+|++|+..++..+-..++
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e--------- 888 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE--------- 888 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH---------
Confidence 34556666778888999999999999888743 45577778888888888888999999988876654433
Q ss_pred CCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002697 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (891)
Q Consensus 174 ~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~ 249 (891)
...++...+...+.|++..||+.+++.+..+....|+ .+.+..+.-.++...+|.+..+.+.+++.|..+.
T Consensus 889 ---~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd--f~~i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 889 ---LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD--FSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred ---HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC--hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 2356677777777888999999999999988876553 2223333444445556665568888888887664
No 65
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.06 E-value=0.00012 Score=84.93 Aligned_cols=149 Identities=21% Similarity=0.270 Sum_probs=116.4
Q ss_pred ccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHH
Q 002697 125 GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (891)
Q Consensus 125 ~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l 204 (891)
....+...+..+...+..+.+.+|-.|++||+.+++.-+..+.. +.+...+..-+.|.+..||.+|++.+
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~----------~dvq~~Vh~R~~DssasVREAaldLv 879 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSR----------PDVQEAVHGRLNDSSASVREAALDLV 879 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcC----------HHHHHHHHHhhccchhHHHHHHHHHH
Confidence 34567778888889999888999999999999999876654432 55666777788899999999999999
Q ss_pred HHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHH
Q 002697 205 NQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACE 284 (891)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~ 284 (891)
+.++-..++...++. ..+.+.+.|+...||+.+++.+..+++..|++ +.+..++-.|++-..|.+..+...+++
T Consensus 880 Grfvl~~~e~~~qyY----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~e 953 (1692)
T KOG1020|consen 880 GRFVLSIPELIFQYY----DQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRE 953 (1692)
T ss_pred hhhhhccHHHHHHHH----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHH
Confidence 999988766555544 44555567888899999999999999999987 445666666777777777667777777
Q ss_pred HHHHh
Q 002697 285 FWHSY 289 (891)
Q Consensus 285 ~l~~l 289 (891)
.+..+
T Consensus 954 tf~kl 958 (1692)
T KOG1020|consen 954 TFLKL 958 (1692)
T ss_pred HHHHH
Confidence 65543
No 66
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.04 E-value=3.4e-09 Score=85.80 Aligned_cols=94 Identities=24% Similarity=0.272 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHH
Q 002697 408 DREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKR 487 (891)
Q Consensus 408 ~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 487 (891)
.|.+++.+|..++.+.++.+.++++.+++.++.++.|++++||.+||.++.++++...+. ...++.+++..+.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----ILPYFNEIFDALCKL 76 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999988754 567999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHH
Q 002697 488 ILDTNKRVQEAACSAFATLE 507 (891)
Q Consensus 488 l~d~~~~v~~~a~~al~~l~ 507 (891)
+.|+++.||..|. .|.+++
T Consensus 77 ~~D~d~~Vr~~a~-~Ld~ll 95 (97)
T PF12755_consen 77 SADPDENVRSAAE-LLDRLL 95 (97)
T ss_pred HcCCchhHHHHHH-HHHHHh
Confidence 9999999999774 455443
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.7e-06 Score=90.24 Aligned_cols=190 Identities=15% Similarity=0.202 Sum_probs=125.5
Q ss_pred CChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhc
Q 002697 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (891)
Q Consensus 86 ~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~ 165 (891)
+.++-...+-.-++.+|.+..+.+|+.+..++-.++-.+ |+....-+|.|.+-+.+++|.+..+|..++..+++.-+..
T Consensus 137 vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 345555566677888999999999999998888888776 4455566788999999999999999999888887765432
Q ss_pred cccCCCCCCCcchhhhHHHHHHhhcCC-CHHHHHHHHHHHHHHhcccchhhH----------------------------
Q 002697 166 LDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSALF---------------------------- 216 (891)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~~~---------------------------- 216 (891)
. =.+-|.|++++.+. +.-+....++.++.+...-|.--.
T Consensus 216 y------------L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 216 Y------------LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVA 283 (877)
T ss_pred c------------ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence 1 12345555555432 223333334444443333221100
Q ss_pred -----------HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 002697 217 -----------VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (891)
Q Consensus 217 -----------~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~ 285 (891)
..+..-++.+-.++.|+++..+--.+-++..++..+|..+..|-+ .+++++.|.|+.+|..|++.
T Consensus 284 ~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALdL 359 (877)
T KOG1059|consen 284 VSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD----LILRCLDDKDESIRLRALDL 359 (877)
T ss_pred ehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH----HHHHHhccCCchhHHHHHHH
Confidence 011111233333455666677777777778888888877665543 45678899999999999999
Q ss_pred HHHhhcc
Q 002697 286 WHSYFEA 292 (891)
Q Consensus 286 l~~l~~~ 292 (891)
+..++..
T Consensus 360 l~gmVsk 366 (877)
T KOG1059|consen 360 LYGMVSK 366 (877)
T ss_pred HHHHhhh
Confidence 9998765
No 68
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.96 E-value=3.2e-09 Score=84.00 Aligned_cols=67 Identities=36% Similarity=0.526 Sum_probs=62.3
Q ss_pred HHHHHHHHhcC-CChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhc--------cCChhhHHHHHHhHhhhhh
Q 002697 36 IWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK--------SMSPSNQQYIKSELLPCLG 103 (891)
Q Consensus 36 a~~~L~~~~~~-p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~--------~~~~~~~~~i~~~ll~~L~ 103 (891)
||++|+++.+. |+|+.+|++++.+ ++.+..+|++|++.|||.|.++|. .++++.|..||+.++++|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~-~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSS-NSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999988 9999999999975 377999999999999999999999 8999999999999999874
No 69
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.93 E-value=1.9e-07 Score=104.25 Aligned_cols=294 Identities=16% Similarity=0.208 Sum_probs=193.8
Q ss_pred HHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcc
Q 002697 132 LLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (891)
Q Consensus 132 ll~~L~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (891)
+++.+..++++- ....+..|+..|..+.....+ +..++.++|.++.++.|+...||..|+.++..++..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----------e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~ 492 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD----------EVKLDRVLPYFVHLLMDSEADVRATALETLTELLAL 492 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch----------HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 456677777663 356777888888777775544 245688999999999999999999999999998754
Q ss_pred c---chhhHHhHHH-HHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhh--cCCCCHHHHHHHH
Q 002697 211 M---PSALFVSMDQ-YLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV--NKDTDDDVALEAC 283 (891)
Q Consensus 211 ~---~~~~~~~~~~-~l~~l~~~~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~v~~~a~ 283 (891)
. +..-...+++ ++|.+-.++.| ....+|.....+|..++.....++. ....+... ..+.+.+
T Consensus 493 Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle-----~~q~~~~~g~~n~~nse------ 561 (1431)
T KOG1240|consen 493 VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLE-----LTQELRQAGMLNDPNSE------ 561 (1431)
T ss_pred ccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHH-----HHHHHHhcccccCcccc------
Confidence 2 2222222333 36778778877 5567888888999998876655433 11111111 1222221
Q ss_pred HHHHHhhcc--CCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccc
Q 002697 284 EFWHSYFEA--QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (891)
Q Consensus 284 ~~l~~l~~~--~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~ 361 (891)
+..+. ....+.+...+.+.+..+ +...
T Consensus 562 ----t~~~~~~~~~~~~L~~~V~~~v~sL---lsd~-------------------------------------------- 590 (1431)
T KOG1240|consen 562 ----TAPEQNYNTELQALHHTVEQMVSSL---LSDS-------------------------------------------- 590 (1431)
T ss_pred ----cccccccchHHHHHHHHHHHHHHHH---HcCC--------------------------------------------
Confidence 00000 001111112222222222 1100
Q ss_pred cccccHHHHHHHHHHHHHHHcCc-chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhh
Q 002697 362 VNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP 440 (891)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~ 440 (891)
.-.+|++-.+.+..|+..+|+ ..-..+++++..++++.| |..|-+=...+.-++-..+.. ..-+.++|.+.+
T Consensus 591 --~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkD---w~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q 663 (1431)
T KOG1240|consen 591 --PPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKD---WRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQ 663 (1431)
T ss_pred --chHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCcc---HHHHHHHHhhccceEEEEeee--eHHHHHHHHHHH
Confidence 013788888889999999987 445678899999999998 999987555444333322221 112337899999
Q ss_pred hcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 002697 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (891)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (891)
.+.|+.+.|-..|+.++.-+++.-- ....++.+++..+...|-.++.-||..+|..+..+.+..
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~l------l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGL------LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcc------cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999988877421 245667777777777788899999999999998888764
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=4.1e-05 Score=82.92 Aligned_cols=196 Identities=14% Similarity=0.129 Sum_probs=129.3
Q ss_pred CChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhc
Q 002697 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (891)
Q Consensus 86 ~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~ 165 (891)
.++|....+-..+-+.++.+++.||++++.|...+.++. |+.-.-+++...+.+.+.+.-+..+++..+..+|+.-++.
T Consensus 135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~ 213 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDA 213 (866)
T ss_pred CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHH
Confidence 356666666667777888999999999999999999886 3344456666777777888888888999999998875543
Q ss_pred cccCCCCCCCcchhhhHHHHHHhhcC---------------CCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHH--
Q 002697 166 LDSDVPGLAECPINIFLPRLLQFFQS---------------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL-- 228 (891)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~~l~~---------------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~-- 228 (891)
+. ..+.+.+.|+..|.+ ++|-++...++.|.-+....++ ....+..++..+.+
T Consensus 214 l~---------~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d-aSd~M~DiLaqvatnt 283 (866)
T KOG1062|consen 214 LS---------YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD-ASDLMNDILAQVATNT 283 (866)
T ss_pred HH---------HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHhcc
Confidence 32 224455555555542 4678888888888887765432 12222222222221
Q ss_pred -----------------hhC-CCCHHHHHHHHHHHHHHHhhChhhhh----HhH-----------HHHHHHHHhhcCCCC
Q 002697 229 -----------------LSN-DPSAEVRKLVCAAFNLLIEVRPSFLE----PHL-----------RNLFEYMLQVNKDTD 275 (891)
Q Consensus 229 -----------------~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~----~~l-----------~~l~~~~~~~~~~~~ 275 (891)
... .++...|..+..+|+.+..+....++ +.+ .+=-..++.|++|+|
T Consensus 284 dsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD 363 (866)
T KOG1062|consen 284 DSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD 363 (866)
T ss_pred cccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc
Confidence 111 24567788888888777654332211 001 111234667889999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 002697 276 DDVALEACEFWHSYFEA 292 (891)
Q Consensus 276 ~~v~~~a~~~l~~l~~~ 292 (891)
..++++|+|....+...
T Consensus 364 ~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNE 380 (866)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998876
No 71
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=4.8e-08 Score=94.60 Aligned_cols=338 Identities=14% Similarity=0.079 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHHHHcCcc-hh---hhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhh-hhHHHHHHHHhhh
Q 002697 367 LRKCSAAALDVLSNVFGDE-IL---PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIPL 441 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~-~~---~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~ 441 (891)
+..+|...++.++...+.. ++ ..+-+.+.+++.+. -..|..+..|+..++..-....+ .....+.| +...
T Consensus 101 Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~----vevqcnaVgCitnLaT~d~nk~kiA~sGaL~p-ltrL 175 (550)
T KOG4224|consen 101 IQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG----VEVQCNAVGCITNLATFDSNKVKIARSGALEP-LTRL 175 (550)
T ss_pred hhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC----cEEEeeehhhhhhhhccccchhhhhhccchhh-hHhh
Confidence 5567788888888777652 22 22334666666653 34455556666666543111111 12222333 4456
Q ss_pred cCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--cccchHhHH
Q 002697 442 LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLE 519 (891)
Q Consensus 442 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~~~~~l~ 519 (891)
-+..+..||+.+.-++..+....... ..-....-+|.++..+...+..||..|+.+++++...- ...+..-=|
T Consensus 176 akskdirvqrnatgaLlnmThs~EnR-----r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 176 AKSKDIRVQRNATGALLNMTHSRENR-----RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred cccchhhHHHHHHHHHHHhhhhhhhh-----hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 67788899999988888776533210 11122345678888889999999999999999987653 444444556
Q ss_pred HHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccc
Q 002697 520 IILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAG 599 (891)
Q Consensus 520 ~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~ 599 (891)
.+++.|+.++.+.+++++..+--+++.++.... ...+-.-..-+|.+++.+++.. -+.+..-..|+..++-.-+.+
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~--Yq~eiv~ag~lP~lv~Llqs~~--~plilasVaCIrnisihplNe 326 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTE--YQREIVEAGSLPLLVELLQSPM--GPLILASVACIRNISIHPLNE 326 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccch--hhhHHHhcCCchHHHHHHhCcc--hhHHHHHHHHHhhcccccCcc
Confidence 789999999999999999888888887764321 1101111234567777776432 344456667887776655443
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHH
Q 002697 600 FTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDV 679 (891)
Q Consensus 600 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 679 (891)
..---...+..++.+|.-.. ..++.-.+.+++-.++.+.......+... .-+|.+...+.|..-++
T Consensus 327 ~lI~dagfl~pLVrlL~~~d-------------nEeiqchAvstLrnLAasse~n~~~i~es-gAi~kl~eL~lD~pvsv 392 (550)
T KOG4224|consen 327 VLIADAGFLRPLVRLLRAGD-------------NEEIQCHAVSTLRNLAASSEHNVSVIRES-GAIPKLIELLLDGPVSV 392 (550)
T ss_pred cceecccchhHHHHHHhcCC-------------chhhhhhHHHHHHHHhhhhhhhhHHHhhc-CchHHHHHHHhcCChhH
Confidence 21100112233444444210 23455567777777877666665555543 35566666777878888
Q ss_pred HHHHHHHHhHHHHhchHhhHHhH--HHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHh
Q 002697 680 RQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVK 738 (891)
Q Consensus 680 r~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~ 738 (891)
++..-.++..++-. +..+.++ ..++|.++..+.+. +.++|.||+.+|+.+...
T Consensus 393 qseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~----s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 393 QSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGSE----SEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCcc----chhhcccHHHHHHhhhhh
Confidence 87766666666543 2333333 25777888777777 789999999999998754
No 72
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=0.00019 Score=77.03 Aligned_cols=366 Identities=12% Similarity=0.071 Sum_probs=222.8
Q ss_pred ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHH
Q 002697 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQH 524 (891)
Q Consensus 446 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~ 524 (891)
+++-...|.+.++.+...+... ......+ .-+++.++..++++..-.+.+||..+..+.+..++. ..+-++++.
T Consensus 429 narq~egalr~lasi~s~itk~---sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~--~ill~aye~ 503 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKM---SPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN--GILLEAYEN 503 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccC---chHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc--hHHHHHHHH
Confidence 4566677888888887744321 1112222 345666777788888889999999999995554332 234566677
Q ss_pred HHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccccch
Q 002697 525 LMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFA 604 (891)
Q Consensus 525 l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 604 (891)
..+++++...+++..+..|+..+.... ++. +.+...+|..++.+-..+ ++-++..+-+|+..++..+.++.+||+
T Consensus 504 t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h--~k~sahVp~tmekLLsLS-n~feiD~LS~vMe~fVe~fseELspfa 578 (970)
T COG5656 504 THNCLKNNHLPVMIEAALALQFFIFNE--QSH--EKFSAHVPETMEKLLSLS-NTFEIDPLSMVMESFVEYFSEELSPFA 578 (970)
T ss_pred HHHHHhcCCcchhhhHHHHHHHHHhch--hhh--HHHHhhhhHHHHHHHHhc-ccccchHHHHHHHHHHHHhHHhhchhH
Confidence 778888877788888888898888754 333 566777777777665554 334445777888899999999999999
Q ss_pred HHHHHHHHHHH-HHHHHH-hhcCcccCCCCchhHH-HHHhhhHHHHHHHHhhhH--HhhhccchHHHHHHHHhcCCChHH
Q 002697 605 QPVFQRCINII-QTQQLA-KVDSVAAGAQYDKEFV-VCCLDLLSGLAEGLGSGI--ESLVAQSNLRDMLLQCCMDDASDV 679 (891)
Q Consensus 605 ~~i~~~l~~~l-~~~~~~-~~~~~~~~~e~d~~~~-~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~v 679 (891)
+++...+.+.+ +-.... ...+|+.+.-+|+.+. .+.+..+..++-++...- -.++.+ .+.|.+.-.++++..+.
T Consensus 579 ~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~-slypvi~Filkn~i~df 657 (970)
T COG5656 579 PELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV-SLYPVISFILKNEISDF 657 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHhhhHHHH
Confidence 99988877632 211111 1112322222256554 345555666655554331 122222 36666666677777788
Q ss_pred HHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhh--h-HHHHHHHHHHH
Q 002697 680 RQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEIS--P-IVMTVVLCLVP 756 (891)
Q Consensus 680 r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~--~-~~~~il~~l~~ 756 (891)
-+.|+..+....- +...+.|....++..+.+.+.++. +...-+.++-++..++..++..|. + |..-+...+..
T Consensus 658 y~Ea~dildg~tf-~skeI~pimwgi~Ell~~~l~~~~---t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~ 733 (970)
T COG5656 658 YQEALDILDGYTF-MSKEIEPIMWGIFELLLNLLIDEI---TAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKL 733 (970)
T ss_pred HHHHHHHHhhhhH-HHHHhhhhhhHHHHHHHhcccccc---hhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHH
Confidence 8888887766543 234566888899999999988874 235567788899999888875542 3 33333433444
Q ss_pred HhcCChhhhhhHHHhHHHHHhhhhhhcCC-ccCcchhHHHHHHHhhccCC-CCchHHHHHHHHHHHHHhhChh
Q 002697 757 ILKHSEELNKSLIENSAITLGRLAWVCPE-LVSPHMEHFMQPWCIALSMI-RDDTEKEDAFRGLCAMVKANPS 827 (891)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~l~~~~~~l~~~-~~~~e~~~~~~~l~~l~~~~~~ 827 (891)
.+.+..+.- .=+..+|..+-.++....+ ...+|++-++...-+.+... +....++-+++....-+-..|.
T Consensus 734 ~l~sE~n~l-~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dElg~~sv~aleliinnli~~P~ 805 (970)
T COG5656 734 CLCSEENFL-EDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDELGPASVYALELIINNLILRPK 805 (970)
T ss_pred HHcchhhhH-HHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhccccccchhhhHHHHHHHHHhcChH
Confidence 444433111 2234466666666666666 34456665555544344332 2223344555554444444554
No 73
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=9.9e-06 Score=86.17 Aligned_cols=262 Identities=15% Similarity=0.152 Sum_probs=165.5
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 002697 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (891)
Q Consensus 126 ~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~ 205 (891)
++--.+|-+.++.++++..|.+|..|+.++..++..+++.+ ..-+|.|..-|.+++|.|..+|+..++
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl------------r~~FprL~EkLeDpDp~V~SAAV~VIC 206 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL------------RPCFPRLVEKLEDPDPSVVSAAVSVIC 206 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH------------hhhHHHHHHhccCCCchHHHHHHHHHH
Confidence 33445677888888888888999999999988888777654 445888888999999999999999999
Q ss_pred HHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 002697 206 QFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (891)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~ 285 (891)
.++...|..+.+..|.|...+ ..+++..+....++.|+.+....|..-...++.+.+. +.+ ..|...
T Consensus 207 ELArKnPknyL~LAP~ffkll---ttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~l----i~s------T~AmSL 273 (877)
T KOG1059|consen 207 ELARKNPQNYLQLAPLFYKLL---VTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITEL----MES------TVAMSL 273 (877)
T ss_pred HHHhhCCcccccccHHHHHHH---hccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHH----HHh------hHHHHH
Confidence 998888877766554433333 2334555667777888887776665544333333333 221 223333
Q ss_pred HHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccc
Q 002697 286 WHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW 365 (891)
Q Consensus 286 l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~ 365 (891)
+..++..-... .|.. +.. | .
T Consensus 274 lYECvNTVVa~----------------s~s~------------------------------------g~~-d-~------ 293 (877)
T KOG1059|consen 274 LYECVNTVVAV----------------SMSS------------------------------------GMS-D-H------ 293 (877)
T ss_pred HHHHHHHheee----------------hhcc------------------------------------CCC-C-c------
Confidence 33332220000 0000 000 0 0
Q ss_pred cHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCC
Q 002697 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK 445 (891)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~ 445 (891)
-..+ .-.++-+..++.++| ...|+-++.+++.++..-++.+..+ -..++.+|.|.
T Consensus 294 --~asi----------------qLCvqKLr~fiedsD---qNLKYlgLlam~KI~ktHp~~Vqa~----kdlIlrcL~Dk 348 (877)
T KOG1059|consen 294 --SASI----------------QLCVQKLRIFIEDSD---QNLKYLGLLAMSKILKTHPKAVQAH----KDLILRCLDDK 348 (877)
T ss_pred --HHHH----------------HHHHHHHhhhhhcCC---ccHHHHHHHHHHHHhhhCHHHHHHh----HHHHHHHhccC
Confidence 0111 123344555667777 9999999999999998766655444 34578899999
Q ss_pred ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHH
Q 002697 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK-RVQEAACSAFATLEE 508 (891)
Q Consensus 446 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~-~v~~~a~~al~~l~~ 508 (891)
++.+|-.|+..+--+. ..+.+..++..|+..+...+. ..|.....-+..+|.
T Consensus 349 D~SIRlrALdLl~gmV-----------skkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 349 DESIRLRALDLLYGMV-----------SKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred CchhHHHHHHHHHHHh-----------hhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 9999999988875544 345667777777777665443 445554444444443
No 74
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.4e-07 Score=89.82 Aligned_cols=343 Identities=12% Similarity=0.054 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHHHHcCcc----hhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhH--HHHHHHHhh
Q 002697 367 LRKCSAAALDVLSNVFGDE----ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIP 440 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~----~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l--~~i~~~l~~ 440 (891)
+|.-+..|+..++..-... ....+.| +...-++.+ -+.|..+.-+|..+...-. -...+ ..-+|.++.
T Consensus 142 vqcnaVgCitnLaT~d~nk~kiA~sGaL~p-ltrLakskd---irvqrnatgaLlnmThs~E--nRr~LV~aG~lpvLVs 215 (550)
T KOG4224|consen 142 VQCNAVGCITNLATFDSNKVKIARSGALEP-LTRLAKSKD---IRVQRNATGALLNMTHSRE--NRRVLVHAGGLPVLVS 215 (550)
T ss_pred EEeeehhhhhhhhccccchhhhhhccchhh-hHhhcccch---hhHHHHHHHHHHHhhhhhh--hhhhhhccCCchhhhh
Confidence 3445666666666553211 1122333 333444555 6667666655555543211 11111 124788999
Q ss_pred hcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHH
Q 002697 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEI 520 (891)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~ 520 (891)
.++..++.||++++.+++.++-.-... ....+.-+.+++.++..+.+++.+|+-.|..||.++.....-...-.-..
T Consensus 216 ll~s~d~dvqyycttaisnIaVd~~~R---k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag 292 (550)
T KOG4224|consen 216 LLKSGDLDVQYYCTTAISNIAVDRRAR---KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAG 292 (550)
T ss_pred hhccCChhHHHHHHHHhhhhhhhHHHH---HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcC
Confidence 999999999999999999987543211 01233335689999999999999999999999999876432211111123
Q ss_pred HHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhcccc
Q 002697 521 ILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGF 600 (891)
Q Consensus 521 il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 600 (891)
-+|.++++++++.-+......-||..+.-.-+.... -.-..++.+++..+.... ++..-..+..++..++.......
T Consensus 293 ~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l--I~dagfl~pLVrlL~~~d-nEeiqchAvstLrnLAasse~n~ 369 (550)
T KOG4224|consen 293 SLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL--IADAGFLRPLVRLLRAGD-NEEIQCHAVSTLRNLAASSEHNV 369 (550)
T ss_pred CchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc--eecccchhHHHHHHhcCC-chhhhhhHHHHHHHHhhhhhhhh
Confidence 466777888776655555555666555544333321 111235566666666532 22222567777777776544322
Q ss_pred ccchH-HHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHH
Q 002697 601 TQFAQ-PVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDV 679 (891)
Q Consensus 601 ~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 679 (891)
..+.+ .-++.+...+... .-.++...-.+++.++- .+.+..++-...+.|++.....+.+.++
T Consensus 370 ~~i~esgAi~kl~eL~lD~--------------pvsvqseisac~a~Lal--~d~~k~~lld~gi~~iLIp~t~s~s~Ev 433 (550)
T KOG4224|consen 370 SVIRESGAIPKLIELLLDG--------------PVSVQSEISACIAQLAL--NDNDKEALLDSGIIPILIPWTGSESEEV 433 (550)
T ss_pred HHHhhcCchHHHHHHHhcC--------------ChhHHHHHHHHHHHHHh--ccccHHHHhhcCCcceeecccCccchhh
Confidence 21111 1234443333311 11222222223333322 2233333222357778888888889999
Q ss_pred HHHHHHHHhHHHHhchH--hhHHh----HHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchh
Q 002697 680 RQSAFALLGDLARVCPV--HLQAR----LSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ 741 (891)
Q Consensus 680 r~~a~~~l~~l~~~~~~--~~~~~----~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~ 741 (891)
|-.|..++++++..... .+... ...+-..+.+.+.+. ...++..+.|++-+++..+..
T Consensus 434 ~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~----~~tf~hia~wTI~qLle~h~~ 497 (550)
T KOG4224|consen 434 RGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASH----ELTFRHIARWTIQQLLEDHDL 497 (550)
T ss_pred cccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHhCCc
Confidence 98888888887764331 11111 134444555555555 567889999999998876653
No 75
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.89 E-value=4.6e-06 Score=86.06 Aligned_cols=442 Identities=14% Similarity=0.098 Sum_probs=208.1
Q ss_pred CChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-CChHHHHHHHhhcc-CCCCHHHHHHHHHHHHHhHHhhhccC
Q 002697 9 PQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQF-PDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSM 86 (891)
Q Consensus 9 p~~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~-p~~~~~l~~il~~~-~~~~~~~R~~a~~~Lk~~i~~~w~~~ 86 (891)
|+.+.-+-+..+++..++-|.. .|+-....++++..- .+.+.....|..+. +..+..+|-.|.-.|- ..+
T Consensus 59 ~e~~at~lff~i~KlFQhkd~~-Lrq~VY~aIkelS~~tedvlm~tssiMkD~~~g~~~~~kp~AiRsL~-------~Vi 130 (898)
T COG5240 59 PEATATNLFFAILKLFQHKDLY-LRQCVYSAIKELSKLTEDVLMGTSSIMKDLNGGVPDDVKPMAIRSLF-------SVI 130 (898)
T ss_pred hhhHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHhhcchhhhHHHHHHHHhhccCCccccccHHHHHHH-------Hhc
Confidence 4444445567777777788888 899999998888763 44444333443221 1344466766654442 334
Q ss_pred ChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhh--cccCchH-HHHHHHHHHhccC------------ChhHHhHH
Q 002697 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL--GGIAGWL-ELLQALVTCLDSN------------DINHMEGA 151 (891)
Q Consensus 87 ~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~--~~~~~w~-~ll~~L~~~l~~~------------~~~~r~~a 151 (891)
+.+..-.+-..+-+++.++.+.+|.++--....+.-. .....|. +.-..+...-+.+ ++-.+..|
T Consensus 131 d~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHa 210 (898)
T COG5240 131 DGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHA 210 (898)
T ss_pred CcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHH
Confidence 4444444444455567777777776543222222111 0113453 2222222222211 22223333
Q ss_pred HHHHHHH-----------Hhhchhc--cccCCCCC---------C---CcchhhhHHHHHHhhcCCCHHHHHHHHHHHHH
Q 002697 152 MDALSKI-----------CEDIPQV--LDSDVPGL---------A---ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (891)
Q Consensus 152 l~~L~~l-----------~~~~~~~--~~~~~~~~---------~---~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~ 206 (891)
+-.|..+ ++.+... +.++..+. + .+...++-|.+-..+.+....|...+.+++..
T Consensus 211 lGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~ 290 (898)
T COG5240 211 LGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCA 290 (898)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 3333222 2222211 11111110 0 12344555666666677777788888888888
Q ss_pred Hhcc-cchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhH---hHHHHHHHHHhhcCCCCHHHHHHH
Q 002697 207 FIML-MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP---HLRNLFEYMLQVNKDTDDDVALEA 282 (891)
Q Consensus 207 ~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~---~l~~l~~~~~~~~~~~~~~v~~~a 282 (891)
+... ..+++. +..+..+-..+..+....|-.|+..|..++..+|..+.. .++.++ .+.+..+...|
T Consensus 291 ~~~~nv~~~~~---~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLI-------sd~Nr~IstyA 360 (898)
T COG5240 291 LSEENVGSQFV---DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLI-------SDENRTISTYA 360 (898)
T ss_pred HHHhccCHHHH---HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHh-------hcccccchHHH
Confidence 7643 233332 334566666677777778889999999999988876532 222222 12222222222
Q ss_pred HHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCCh-----hhhhhhhh-cccCCCCCCCCCCCcccccccCCCCCCCCC
Q 002697 283 CEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYAD-----DDESLVEA-EEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (891)
Q Consensus 283 ~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~-----~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 356 (891)
+..+..-... +.+.. +-..++.++.-|...- +-++.... -|.. +..++ . |.. +..
T Consensus 361 ITtLLKTGt~----e~idr-Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k----~~s~l-~-FL~------~~L-- 421 (898)
T COG5240 361 ITTLLKTGTE----ETIDR-LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK----KLSYL-D-FLG------SSL-- 421 (898)
T ss_pred HHHHHHcCch----hhHHH-HHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH----HHHHH-H-HHH------HHH--
Confidence 2222111110 00000 1111111111111000 00000000 0000 00000 0 000 000
Q ss_pred CCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhh--hhhHHHH
Q 002697 357 DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL--YPHLSEI 434 (891)
Q Consensus 357 ~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~--~~~l~~i 434 (891)
- ...++.+++.+..++..+.+..|+. -...+..+..++.+.+ + -+-++..|+.+.+..++.- ..|+
T Consensus 422 ~---~eGg~eFK~~~Vdaisd~~~~~p~s-kEraLe~LC~fIEDce---y--~~I~vrIL~iLG~EgP~a~~P~~yv--- 489 (898)
T COG5240 422 L---QEGGLEFKKYMVDAISDAMENDPDS-KERALEVLCTFIEDCE---Y--HQITVRILGILGREGPRAKTPGKYV--- 489 (898)
T ss_pred H---hcccchHHHHHHHHHHHHHhhCchH-HHHHHHHHHHHHhhcc---h--hHHHHHHHHHhcccCCCCCCcchHH---
Confidence 0 0012335566666666655555431 1233444444444433 2 2344455555554433211 1222
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002697 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (891)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (891)
-++.+.+-=++..||.+|..||++|+-... .....+.+...+-.+++|.+..||..|..++..+-
T Consensus 490 -rhIyNR~iLEN~ivRsaAv~aLskf~ln~~-------d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 490 -RHIYNRLILENNIVRSAAVQALSKFALNIS-------DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred -HHHHHHHHHhhhHHHHHHHHHHHHhccCcc-------ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 233333334678899999999999987553 22233456666677888999999999999887654
No 76
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.89 E-value=8.5e-05 Score=77.05 Aligned_cols=497 Identities=14% Similarity=0.098 Sum_probs=259.1
Q ss_pred HHHHHHHHHHHHHHhhc--ccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHH
Q 002697 108 HIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (891)
Q Consensus 108 ~vr~~~a~~l~~i~~~~--~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (891)
.-|+.+..++..++..+ +...-.+++=.+..+.++.++..|.....++..+.....+.+ -....+
T Consensus 40 ~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl-------------m~tssi 106 (898)
T COG5240 40 SARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVL-------------MGTSSI 106 (898)
T ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhh-------------HHHHHH
Confidence 44555555555554443 233445677888888999998888766666644443221110 112344
Q ss_pred HHhhcCCCH-HHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHH
Q 002697 186 LQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLF 264 (891)
Q Consensus 186 ~~~l~~~~~-~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~ 264 (891)
++-++.+.+ .+|-.|++.|..++.. .....++.+++ +...++...++..++-.--.+.-...........+.-
T Consensus 107 MkD~~~g~~~~~kp~AiRsL~~Vid~---~tv~~~er~l~---~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~q 180 (898)
T COG5240 107 MKDLNGGVPDDVKPMAIRSLFSVIDG---ETVYDFERYLN---QAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQ 180 (898)
T ss_pred HHhhccCCccccccHHHHHHHHhcCc---chhhhHHHHhh---hhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHH
Confidence 555555555 6888888888777643 22333333332 3344555666665544333333222222233332222
Q ss_pred HHHHhhc----C--------CCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCC
Q 002697 265 EYMLQVN----K--------DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESL 332 (891)
Q Consensus 265 ~~~~~~~----~--------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~ 332 (891)
+..+..- . +..+-....|+.++..+-++.. - ..-.++..+.....
T Consensus 181 eav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dk--m----a~lklv~hf~~n~s----------------- 237 (898)
T COG5240 181 EAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDK--M----AQLKLVEHFRGNAS----------------- 237 (898)
T ss_pred HHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccH--H----HHHHHHHHhhcccc-----------------
Confidence 2222221 1 1223356777887777655411 0 11223333221110
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHc--CcchhhhhHHHHHHhhccCCCcchHHHH
Q 002697 333 PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF--GDEILPTLMPVIQAKLSASGDEAWKDRE 410 (891)
Q Consensus 333 ~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~r~ 410 (891)
++ -..+....+......+ ..+.+..+.|++...+++.- -.+..
T Consensus 238 ------mk--------------------------nq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~---emV~l 282 (898)
T COG5240 238 ------MK--------------------------NQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKF---EMVFL 282 (898)
T ss_pred ------cc--------------------------cchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcc---hhhhH
Confidence 00 0112222233333333 23567788899988888754 44445
Q ss_pred HHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcC
Q 002697 411 AAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (891)
Q Consensus 411 aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d 490 (891)
.++.++..++.... -...+.+.+..+-..|..+....|.+|++.+.+++...++.+ .... +.+-..+.|
T Consensus 283 E~Ar~v~~~~~~nv--~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv------~vcN---~evEsLIsd 351 (898)
T COG5240 283 EAARAVCALSEENV--GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV------SVCN---KEVESLISD 351 (898)
T ss_pred HHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee------eecC---hhHHHHhhc
Confidence 55566666665331 124566778888888899999999999999999998766421 1111 122233446
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHH
Q 002697 491 TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIA 570 (891)
Q Consensus 491 ~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~ 570 (891)
.+ |.-+..|+..+++...+. -++.++..+...+.+.++.-+..+.+++.+++-..+.+-. .|+ ..|..
T Consensus 352 ~N---r~IstyAITtLLKTGt~e---~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~--s~l----~FL~~ 419 (898)
T COG5240 352 EN---RTISTYAITTLLKTGTEE---TIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL--SYL----DFLGS 419 (898)
T ss_pred cc---ccchHHHHHHHHHcCchh---hHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH--HHH----HHHHH
Confidence 55 444666777777765332 2334444444555555555556778888888876654432 343 34444
Q ss_pred HHHcCCCCCcch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHH
Q 002697 571 KWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAE 649 (891)
Q Consensus 571 ~l~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~ 649 (891)
.+.+.+ ..+. ..++++++.+... .|+--++.+..|+...+ |-++-.-+.+.++.
T Consensus 420 ~L~~eG--g~eFK~~~Vdaisd~~~~--------~p~skEraLe~LC~fIE------------Dcey~~I~vrIL~i--- 474 (898)
T COG5240 420 SLLQEG--GLEFKKYMVDAISDAMEN--------DPDSKERALEVLCTFIE------------DCEYHQITVRILGI--- 474 (898)
T ss_pred HHHhcc--cchHHHHHHHHHHHHHhh--------CchHHHHHHHHHHHHHh------------hcchhHHHHHHHHH---
Confidence 444321 1222 3455555554432 22233334444443321 22222222222332
Q ss_pred HHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHH
Q 002697 650 GLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNAC 729 (891)
Q Consensus 650 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~ 729 (891)
+|.....--.+..+...++..+--++.-||.+|+.+|..++-+..+.+.| ..+...+.+++.+. +.+||+.|.
T Consensus 475 -LG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~--~sv~~~lkRclnD~----DdeVRdrAs 547 (898)
T COG5240 475 -LGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP--QSVENALKRCLNDQ----DDEVRDRAS 547 (898)
T ss_pred -hcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH--HHHHHHHHHHhhcc----cHHHHHHHH
Confidence 23322111111234444554444567889999999998887765543322 24455566677776 678999998
Q ss_pred HHHHHHH
Q 002697 730 WAIGELA 736 (891)
Q Consensus 730 ~alg~l~ 736 (891)
.++..+-
T Consensus 548 f~l~~~~ 554 (898)
T COG5240 548 FLLRNMR 554 (898)
T ss_pred HHHHhhh
Confidence 8887664
No 77
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.87 E-value=3.1e-06 Score=91.38 Aligned_cols=357 Identities=17% Similarity=0.167 Sum_probs=208.7
Q ss_pred HHHHHHHHHHcCc-chhhhhHHHHHHhh----ccCCCcchHHHHHHHHHHHHHhhcchhhh-----hhhHHH-HHHHHhh
Q 002697 372 AAALDVLSNVFGD-EILPTLMPVIQAKL----SASGDEAWKDREAAVLALGAIAEGCIKGL-----YPHLSE-IVAFLIP 440 (891)
Q Consensus 372 ~~~l~~l~~~~~~-~~~~~l~~~l~~~l----~~~~~~~~~~r~aa~~~l~~l~~~~~~~~-----~~~l~~-i~~~l~~ 440 (891)
..+|+.++..... .++..+.+.+...+ ++.. +.....+.+.++..+.+...+.. ..|.+. ++|.++.
T Consensus 20 ~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~--~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~ 97 (415)
T PF12460_consen 20 ERILEALAALSTSPQILETLSIRLLNKLSIVCQSES--SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFE 97 (415)
T ss_pred HHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHH
Confidence 3444444444422 44444444444433 3221 26667777788877766553222 233333 5555544
Q ss_pred hc----CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHH-----HHhcCCCH---HHHHHHHHHHHHHHH
Q 002697 441 LL----DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL-----KRILDTNK---RVQEAACSAFATLEE 508 (891)
Q Consensus 441 ~l----~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~-----~~l~d~~~---~v~~~a~~al~~l~~ 508 (891)
.. ..... ........++++...+...++++......+.+...++ ..+..... ..+......+..++.
T Consensus 98 ~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~ 176 (415)
T PF12460_consen 98 LALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILC 176 (415)
T ss_pred HHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHH
Confidence 33 22211 2223334444444443332222233444444444443 00110111 123344444555665
Q ss_pred Hhcccc-hHhHHHHHHHHHHHHcccc-hhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHH
Q 002697 509 EAAEEL-APRLEIILQHLMMAFGKYQ-RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLL 586 (891)
Q Consensus 509 ~~~~~~-~~~l~~il~~l~~~l~~~~-~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 586 (891)
...... .|....+++.++....+.. ...+..+..+++.++....+. +.++.++..+...+ ............+
T Consensus 177 ~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~----~~l~~~l~~~~~~~-~~~~~~~~~~~~~ 251 (415)
T PF12460_consen 177 SLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD----DDLDEFLDSLLQSI-SSSEDSELRPQAL 251 (415)
T ss_pred cCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh----hhHHHHHHHHHhhh-cccCCcchhHHHH
Confidence 554433 3577778888888775554 455667888888888775443 45555665555555 1111222235677
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHH--------HhhhHHhh
Q 002697 587 ECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEG--------LGSGIESL 658 (891)
Q Consensus 587 ~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~--------~~~~~~~~ 658 (891)
+.+.-+.+++=..-.|....+...++..+.+. ++...+.+.++.++.- .+.....+
T Consensus 252 ~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~----------------~~g~~aA~~f~il~~d~~~~l~~~~~a~vklL 315 (415)
T PF12460_consen 252 EILIWITKALVMRGHPLATELLDKLLELLSSP----------------ELGQQAAKAFGILLSDSDDVLNKENHANVKLL 315 (415)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh----------------hhHHHHHHHHhhHhcCcHHhcCccccchhhhH
Confidence 87777777765555677777777777776632 2222333334333332 11122223
Q ss_pred hcc---chHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchH-hhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHH
Q 002697 659 VAQ---SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV-HLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGE 734 (891)
Q Consensus 659 ~~~---~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~ 734 (891)
..| ..++|.+...++..+.+.|..-+.++..+.+++|. -+.++++.++|.+++.|+.+ +..++..+..++-.
T Consensus 316 ykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~----~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 316 YKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP----DADVLLSSLETLKM 391 (415)
T ss_pred HhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHH
Confidence 333 34777888888777777888899999999999994 57799999999999999888 67899999999999
Q ss_pred HHHhchhhhhhHHHHHHHHHHH
Q 002697 735 LAVKARQEISPIVMTVVLCLVP 756 (891)
Q Consensus 735 l~~~~~~~~~~~~~~il~~l~~ 756 (891)
+....++-+.+|+..+++.++.
T Consensus 392 ~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 392 ILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh
Confidence 9988887888999988887765
No 78
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=0.00031 Score=76.04 Aligned_cols=391 Identities=10% Similarity=0.057 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhc-----CCCCh-HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHH-
Q 002697 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL-----DDKFP-LIRSISCWTLSRFSKFIVQDIGHQNGREQFEK- 479 (891)
Q Consensus 407 ~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-----~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~- 479 (891)
..|-.|-..+..+-....+-+.|.+-+++....... +|-.. ..+.++..+.|.-+..+.... +..+++..
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~---dF~~Wl~~~ 488 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNIL---DFDKWLQEA 488 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHh
Confidence 355555555555555444444444444443333333 22223 344555556666555554321 23444433
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hcccchHhHHHHHHHHHHHHcccchh-HHHHHHHHHHHHHHH---hccc
Q 002697 480 VLMGLLKRILDTNKRVQEAACSAFATLEEE-AAEELAPRLEIILQHLMMAFGKYQRR-NLRIVYDAIGTLADA---VGFE 554 (891)
Q Consensus 480 ~l~~l~~~l~d~~~~v~~~a~~al~~l~~~-~~~~~~~~l~~il~~l~~~l~~~~~~-~~~~~~~al~~l~~~---~~~~ 554 (891)
+++.+- .-.+....+|.+.++.++..+.. ++..+. +.+...+++.+++.++. ++..+.+++..+++- .++.
T Consensus 489 llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k---~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ds 564 (978)
T KOG1993|consen 489 LLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELK---PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDS 564 (978)
T ss_pred hCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHH---HHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhh
Confidence 333332 11223345688999999988763 233333 34556677888877554 455778888887764 3455
Q ss_pred CCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCch
Q 002697 555 LNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDK 634 (891)
Q Consensus 555 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~ 634 (891)
|. ||++.+.-.+++.+...+.-|. ...++..++.+....++.+.||+..+++.+-...+.. +.+.
T Consensus 565 Fl--p~lenlf~~lfkll~~~~e~Dt-k~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s------------~~e~ 629 (978)
T KOG1993|consen 565 FL--PYLENLFVLLFKLLKAVEECDT-KTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES------------EEEP 629 (978)
T ss_pred hh--hhHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh------------ccCc
Confidence 65 7888888888888877543222 2478899999999999999999998888665555432 2245
Q ss_pred hHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCCh---HHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHH
Q 002697 635 EFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDAS---DVRQSAFALLGDLARVCPVHLQARLSDFLDIAAK 711 (891)
Q Consensus 635 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 711 (891)
-++.+.+.++..++.++|....++.+- +.|.+..+..-.++ ...+.++.+++....+.+ .+.|-+-.++|.+..
T Consensus 630 lLr~alL~~L~~lV~alg~qS~~~~~f--L~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~-~l~p~ll~L~p~l~~ 706 (978)
T KOG1993|consen 630 LLRCALLATLRNLVNALGAQSFEFYPF--LYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQ-KLTPELLLLFPHLLY 706 (978)
T ss_pred HHHHHHHHHHHHHHHHhccCCccchHH--HHHHHHHhcCCCCCceeehhhhHHHHHHHHHhccc-ccCHHHHHHHHHHHH
Confidence 567777889999999999886665543 67776655432222 345778888888777653 233333344444444
Q ss_pred hcCCCCCcCchhHhhhHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcc
Q 002697 712 QLNTPKLKETVSVANNACWAIGELAVKA-RQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPH 790 (891)
Q Consensus 712 ~l~~~~~~~~~~v~~~a~~alg~l~~~~-~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 790 (891)
.+..+ .+..+ .+..-+...+.-. +.-+..|...+.+.+...+.+-. ..-....+..+..++..+|-.-..+
T Consensus 707 ~iE~s----te~L~-t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr---~egl~avLkiveili~t~~il~~~~ 778 (978)
T KOG1993|consen 707 IIEQS----TENLP-TVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVR---NEGLQAVLKIVEILIKTNPILGSLL 778 (978)
T ss_pred HHHhh----hhhHH-HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHhhhHHHHhhh
Confidence 44333 22222 2222222222222 22245567777777766665432 2223344455555555444111113
Q ss_pred hhHHHHHHHhhccCCCCchHHHHHHHH-HHHHHhhChhhhH
Q 002697 791 MEHFMQPWCIALSMIRDDTEKEDAFRG-LCAMVKANPSGAL 830 (891)
Q Consensus 791 ~~~~l~~~~~~l~~~~~~~e~~~~~~~-l~~l~~~~~~~~~ 830 (891)
.+.+++.++..+.......--...+.+ ++.+...+|..++
T Consensus 779 ~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~m 819 (978)
T KOG1993|consen 779 FSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFM 819 (978)
T ss_pred cchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHH
Confidence 344555555544332222222233333 3444444665554
No 79
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.83 E-value=4.6e-07 Score=96.22 Aligned_cols=305 Identities=15% Similarity=0.221 Sum_probs=198.9
Q ss_pred cccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCC--CCcch-HhHHH
Q 002697 511 AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN--SDKDL-FPLLE 587 (891)
Q Consensus 511 ~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~~~-~~~~~ 587 (891)
+..+.|+...++..|+.++.......-+.++.|+-.+....++... ++...+++.+..++....+ +++.. ..+.|
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~--p~~~~il~~L~~il~~v~kNPsnP~FnHylFE 94 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDIL--PIAVEILQHLTAILKEVSKNPSNPRFNHYLFE 94 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTG--GGHHHHHHHHHHHHHHHHTS---HHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Confidence 4678899999999999999775544445677888888888888876 8888888888887765432 23444 67999
Q ss_pred HHHHHHHHhcc----ccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHh-hhHHhhhccc
Q 002697 588 CFTSIAQALGA----GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLG-SGIESLVAQS 662 (891)
Q Consensus 588 ~l~~i~~~~~~----~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~ 662 (891)
+++.+.+...+ ....+-+.++|.+..+|+++. .++.-.++.+++.+.+... ....+...+
T Consensus 95 si~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV--------------~EF~PYvfQIla~Lle~~~~~~~p~~y~~- 159 (435)
T PF03378_consen 95 SIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDV--------------QEFIPYVFQILAQLLELRPSSPLPDAYKQ- 159 (435)
T ss_dssp HHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT---------------TTTHHHHHHHHHHHHHHSS--S--TTTGG-
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCCCCcHHHHH-
Confidence 99999887654 234566778888888887532 2566667888888888766 334333333
Q ss_pred hHHHHHHH-HhcCCChHHHHHHHHHHhHHHHhchHhhH--HhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhc
Q 002697 663 NLRDMLLQ-CCMDDASDVRQSAFALLGDLARVCPVHLQ--ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (891)
Q Consensus 663 ~l~~~l~~-~~~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~ 739 (891)
+++.++. .+.+....+ -..+.++..+++..+..+. +.+..++...-+.+.++. --..+...|..+..+.
T Consensus 160 -L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~------~D~~gF~LL~~iv~~~ 231 (435)
T PF03378_consen 160 -LFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA------NDHYGFDLLESIVENL 231 (435)
T ss_dssp -GHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT------CHHHHHHHHHHHHHHS
T ss_pred -HHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC------cchHHHHHHHHHHHHC
Confidence 5555542 233333333 4566778888887776654 577788888777777662 2245778889999988
Q ss_pred hh-hhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhh-cCCcc-------Ccc-hhHHH-HHHHhhccCCCCc
Q 002697 740 RQ-EISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWV-CPELV-------SPH-MEHFM-QPWCIALSMIRDD 808 (891)
Q Consensus 740 ~~-~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~-------~~~-~~~~l-~~~~~~l~~~~~~ 808 (891)
+. .+.||+..++..++..+.+++ ........+..++.++.+ +++.+ .+. ..+++ ..|+..+......
T Consensus 232 p~~~l~~yl~~I~~lll~RLq~sk--T~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~ 309 (435)
T PF03378_consen 232 PPEALEPYLKQIFTLLLTRLQSSK--TEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP 309 (435)
T ss_dssp -HHHHGGGHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCC--cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc
Confidence 75 589999999999999998765 355666666666666543 33322 221 22333 4577778877777
Q ss_pred hHHHHHHHHHHHHHhhChhhh---HhhHHHHhhHhhc
Q 002697 809 TEKEDAFRGLCAMVKANPSGA---LSSLVFMCRAIAS 842 (891)
Q Consensus 809 ~e~~~~~~~l~~l~~~~~~~~---~~~l~~~~~~~~~ 842 (891)
.||+.+.-|+++++...+... ...++.++++++.
T Consensus 310 ~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ 346 (435)
T PF03378_consen 310 IERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLK 346 (435)
T ss_dssp HHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHH
Confidence 899999999999997655332 2456666666654
No 80
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.82 E-value=9.2e-06 Score=87.72 Aligned_cols=367 Identities=17% Similarity=0.201 Sum_probs=225.8
Q ss_pred HHHhhhcCCCCh---HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHH
Q 002697 436 AFLIPLLDDKFP---LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-----TNKRVQEAACSAFATLE 507 (891)
Q Consensus 436 ~~l~~~l~d~~~---~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-----~~~~v~~~a~~al~~l~ 507 (891)
|.++..|.|... .-......+++.++. ....++.+++.++..+.. .+...-..++.++..+.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~----------~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~ 71 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALST----------SPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLL 71 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHC----------ChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 556677776554 445556666666665 344455666666655542 14455666777788877
Q ss_pred HHhccc-----chHhHHH-HHHHHHHHHcccc-------hhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHH--HH
Q 002697 508 EEAAEE-----LAPRLEI-ILQHLMMAFGKYQ-------RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIA--KW 572 (891)
Q Consensus 508 ~~~~~~-----~~~~l~~-il~~l~~~l~~~~-------~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~--~l 572 (891)
+..... ..-|... +++.+++...... ...+..+...++.+++..+.+-. ...++.+...+.. ..
T Consensus 72 ~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q-~~~~~~~~~lf~~~~~~ 150 (415)
T PF12460_consen 72 EKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ-QEILDELYSLFLSPKSF 150 (415)
T ss_pred HhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHcccccc
Confidence 766322 2445553 7777777663321 23344445555555555554332 1344444433320 00
Q ss_pred HcCCCCCc----chHhHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHH
Q 002697 573 QQLPNSDK----DLFPLLECFTSIAQALGAGFT-QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGL 647 (891)
Q Consensus 573 ~~~~~~~~----~~~~~~~~l~~i~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l 647 (891)
........ .-...+-.+..+..++..... |....+++.+++..... .+...+..+..+++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~-------------~~~~~~~~~~~~la~L 217 (415)
T PF12460_consen 151 SPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSS-------------EDEFSRLAALQLLASL 217 (415)
T ss_pred CCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcC-------------CChHHHHHHHHHHHHH
Confidence 00000011 112444455566666665433 66667777776655421 1456677788889888
Q ss_pred HHHHhhh--HHhhhccchHHHHHHHHh-cCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhH
Q 002697 648 AEGLGSG--IESLVAQSNLRDMLLQCC-MDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSV 724 (891)
Q Consensus 648 ~~~~~~~--~~~~~~~~~l~~~l~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v 724 (891)
+..+..+ +..++. .+.... .......+..++..+.-+.++.--.-.|....++..++..++++ .+
T Consensus 218 vNK~~~~~~l~~~l~------~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~------~~ 285 (415)
T PF12460_consen 218 VNKWPDDDDLDEFLD------SLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSP------EL 285 (415)
T ss_pred HcCCCChhhHHHHHH------HHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh------hh
Confidence 8875332 333332 233222 34456667777777777776654344466667777777777765 67
Q ss_pred hhhHHHHHHHHHHhch--------hhhh-----hHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCcc-Ccc
Q 002697 725 ANNACWAIGELAVKAR--------QEIS-----PIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELV-SPH 790 (891)
Q Consensus 725 ~~~a~~alg~l~~~~~--------~~~~-----~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~ 790 (891)
...|+.+++.+....+ ..++ .+...+++.++.-+.... ...+.+...+++.++...|..+ .++
T Consensus 286 g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~---~~~k~~yL~ALs~ll~~vP~~vl~~~ 362 (415)
T PF12460_consen 286 GQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD---DEIKSNYLTALSHLLKNVPKSVLLPE 362 (415)
T ss_pred HHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC---hhhHHHHHHHHHHHHhhCCHHHHHHH
Confidence 7889999999876522 1122 345556666666555543 3478888999999999887665 578
Q ss_pred hhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChhhhHhhHHHHhhHhhc
Q 002697 791 MEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIAS 842 (891)
Q Consensus 791 ~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~ 842 (891)
++.++|.++.+|.. .|.+.+..+.+.+..++...|+.+.+|+..++..+++
T Consensus 363 l~~LlPLLlqsL~~-~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 363 LPTLLPLLLQSLSL-PDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 89999999999976 5566788999999999999999998999888887764
No 81
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=3.5e-05 Score=83.57 Aligned_cols=426 Identities=12% Similarity=0.114 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHH-hcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhcCChHHH
Q 002697 32 DKSQIWQQLQQY-SQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIR 110 (891)
Q Consensus 32 ~r~~a~~~L~~~-~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~~~~vr 110 (891)
.|+.|-+..-.. .-..+.......++....+.+.+.+.+.-.++.|+-.. .++..-...+.+++-..++++.+|
T Consensus 29 kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~-----~P~~a~~avnt~~kD~~d~np~iR 103 (734)
T KOG1061|consen 29 KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG-----KPDLAILAVNTFLKDCEDPNPLIR 103 (734)
T ss_pred hHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc-----CchHHHhhhhhhhccCCCCCHHHH
Confidence 777777776553 33455555555555544466788888888887655332 222333334555566678899999
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhc
Q 002697 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (891)
Q Consensus 111 ~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 190 (891)
..+....+.+ -.++.|.-+..-+..++++.++.+|..+..+...+...-++.... ..+++.+...+.
T Consensus 104 ~lAlrtm~~l---~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~----------~gl~~~L~~ll~ 170 (734)
T KOG1061|consen 104 ALALRTMGCL---RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED----------SGLVDALKDLLS 170 (734)
T ss_pred HHHhhceeeE---eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc----------cchhHHHHHHhc
Confidence 8755544433 235678888999999999999999999998888877654443221 567888888889
Q ss_pred CCCHHHHHHHHHHHHHHhcccch-hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHh
Q 002697 191 SPHTSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQ 269 (891)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~ 269 (891)
|.++.|...|+.++..+.+..++ ........++..++..++.-++.-+. ..|..+++..|+.- ....++++.+..
T Consensus 171 D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi---~IL~~l~~y~p~d~-~ea~~i~~r~~p 246 (734)
T KOG1061|consen 171 DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQI---FILDCLAEYVPKDS-REAEDICERLTP 246 (734)
T ss_pred CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHH---HHHHHHHhcCCCCc-hhHHHHHHHhhh
Confidence 99999999999999999877653 22222234455555555433333333 34444444444432 234566766666
Q ss_pred hcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCC
Q 002697 270 VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (891)
Q Consensus 270 ~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 349 (891)
.+.+....+...+..++...... ....-..++.++-+.++..+...+
T Consensus 247 ~Lqh~n~avvlsavKv~l~~~~~--~~~~~~~~~~K~~~pl~tlls~~~------------------------------- 293 (734)
T KOG1061|consen 247 RLQHANSAVVLSAVKVILQLVKY--LKQVNELLFKKVAPPLVTLLSSES------------------------------- 293 (734)
T ss_pred hhccCCcceEeehHHHHHHHHHH--HHHHHHHHHHHhcccceeeecccc-------------------------------
Confidence 67777777777777777666554 222112223333333222222111
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhcc-CCCcchHHHHHHHHHHHHHhhcchhhhh
Q 002697 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLY 428 (891)
Q Consensus 350 ~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~r~aa~~~l~~l~~~~~~~~~ 428 (891)
.....|..-+..+....++ ++.. .+..++-. .+. -.++..-+.++..++. .
T Consensus 294 ----------------e~qyvaLrNi~lil~~~p~-~~~~---~~~~Ff~kynDP--iYvK~eKleil~~la~------~ 345 (734)
T KOG1061|consen 294 ----------------EIQYVALRNINLILQKRPE-ILKV---EIKVFFCKYNDP--IYVKLEKLEILIELAN------D 345 (734)
T ss_pred ----------------hhhHHHHhhHHHHHHhChH-HHHh---HhHeeeeecCCc--hhhHHHHHHHHHHHhh------H
Confidence 1223344444444444433 2111 11111111 111 3445555555655554 2
Q ss_pred hhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002697 429 PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (891)
Q Consensus 429 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (891)
..+.+++.-+.....+-++..-..+.+++|+++.... +. +.++..++..+.-...-|...++..+..+..
T Consensus 346 ~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e---------~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 346 ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAE---------QS-NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh---------hh-hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 3455566666666667777666678899999987553 12 6788888888875444455556666777766
Q ss_pred HhcccchHhHHHHHHHHHHHHcccchhH-HHHHHHHHHHHHHHhccc
Q 002697 509 EAAEELAPRLEIILQHLMMAFGKYQRRN-LRIVYDAIGTLADAVGFE 554 (891)
Q Consensus 509 ~~~~~~~~~l~~il~~l~~~l~~~~~~~-~~~~~~al~~l~~~~~~~ 554 (891)
.++... +.+++.+...+.+-+++. +.+....+|..+...++.
T Consensus 416 kyP~~~----~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a 458 (734)
T KOG1061|consen 416 KYPNKY----ESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA 458 (734)
T ss_pred cCCCch----hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH
Confidence 654432 445555555555554444 445566777777665443
No 82
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.75 E-value=6.4e-07 Score=88.67 Aligned_cols=203 Identities=17% Similarity=0.175 Sum_probs=129.8
Q ss_pred hcCCChHHHHHHHHHHhHHHHhc-----hHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhH
Q 002697 672 CMDDASDVRQSAFALLGDLARVC-----PVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPI 746 (891)
Q Consensus 672 ~~~~~~~vr~~a~~~l~~l~~~~-----~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~ 746 (891)
-.+.+++.|..|+.-+..++... ...+.+.+..++..+...+.+. ...+...|+.+++.++...+..|.||
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~----Rs~v~~~A~~~l~~l~~~l~~~~~~~ 91 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL----RSKVSKTACQLLSDLARQLGSHFEPY 91 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-------HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 35678999999999999998877 2455566667778888888876 45788999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhCh
Q 002697 747 VMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANP 826 (891)
Q Consensus 747 ~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~ 826 (891)
++.+++.|+..+.++. ..+++.+..++..++...+ +.+.++...+.......+..-|..+...+..++...+
T Consensus 92 ~~~~l~~Ll~~~~~~~---~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSK---KFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcccc---HHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 9999999999998874 6788888888888887654 2334533333333333556678888898999988866
Q ss_pred ---hhhHh--hHHHHhhHhhcccccCchhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHHhh
Q 002697 827 ---SGALS--SLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLS 887 (891)
Q Consensus 827 ---~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 887 (891)
..+.. .++.+...+.....+..++++...++.+..+.+.+|+ .-..++..++|..++.|+
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~-~a~~~~~~l~~~~qk~le 228 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE-RAESILSMLDPNIQKYLE 228 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H-HH----------------
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH-hhccchhcchhcccccCC
Confidence 33332 3577777777765566778999999999999999996 678888999999998763
No 83
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.74 E-value=3.4e-07 Score=90.63 Aligned_cols=180 Identities=17% Similarity=0.125 Sum_probs=130.3
Q ss_pred ccccHHHHHHHHHHHHHHHc-CcchhhhhH-------HHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHH
Q 002697 363 NVWNLRKCSAAALDVLSNVF-GDEILPTLM-------PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (891)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~-------~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i 434 (891)
.+|+.|..|...|..+.... +....+.++ ..+...+.+.. -.+-..|+.+++.++......+.++++.+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R---s~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR---SKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH------HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 36999999999999998877 222223333 33444444444 56778889999999999999999999999
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--
Q 002697 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV-LMGLLKRILDTNKRVQEAACSAFATLEEEAA-- 511 (891)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-- 511 (891)
+|.++..+.|++..+|.+|..++..+++.+. +...+ ++.+...+.+.++.+|..++..+..+++..+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS----------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-----------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC----------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence 9999999999999999999999999887553 22344 6677778888999999999999999998776
Q ss_pred -ccchH--hHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccC
Q 002697 512 -EELAP--RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (891)
Q Consensus 512 -~~~~~--~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~ 555 (891)
..+.. .++.+.+.+.+.+.+.+..++..+-.++..+.+..|+..
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 44443 468899999999999999999999999999988877653
No 84
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.73 E-value=5e-06 Score=86.50 Aligned_cols=280 Identities=14% Similarity=0.184 Sum_probs=168.0
Q ss_pred HHHHHHHHHHhcc--CChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCC--------------C
Q 002697 130 LELLQALVTCLDS--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--------------H 193 (891)
Q Consensus 130 ~~ll~~L~~~l~~--~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------------~ 193 (891)
-+++..+.+.+.+ .++......+.++..+++-+......+.|++|++.+..++..+..+|.-+ -
T Consensus 30 l~l~~~~~~~i~~~~~~~~~l~~~~~~l~lilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l 109 (370)
T PF08506_consen 30 LELFKQTDQLIEANANNAASLKVLFEMLKLILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLL 109 (370)
T ss_dssp HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHH
Confidence 3455555555543 34455556667777777766665556777777788888888887776421 1
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHhhC--hhhh--hHhHHHHH
Q 002697 194 TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPS-----AEVRKLVCAAFNLLIEVR--PSFL--EPHLRNLF 264 (891)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~v~~~~~~~l~~l~~~~--~~~~--~~~l~~l~ 264 (891)
..++..+++++..+.....+.+.++++.+++.+++++.... ..+-..++..|..+++.. ...+ .++++.|+
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 36788899999999988888888999999999999875321 223344556665554421 1122 35666665
Q ss_pred HHH-----------------------HhhcCCCC-HHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhh
Q 002697 265 EYM-----------------------LQVNKDTD-DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDD 320 (891)
Q Consensus 265 ~~~-----------------------~~~~~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d 320 (891)
+.+ .+.++.+| ...|..|++++..+++. ..+.+.+.+...+..+++....
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~--~~~~v~~i~~~~i~~~l~~y~~---- 263 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKK--FEKQVTSILMQYIQQLLQQYAS---- 263 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHhh----
Confidence 432 22222233 23467789999999876 4444444444444444321110
Q ss_pred hhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcC-----cchhh---hhHH
Q 002697 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG-----DEILP---TLMP 392 (891)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~-----~~~~~---~l~~ 392 (891)
+...+|+.+.+|..+++.++.... ..-.+ .+.+
T Consensus 264 ---------------------------------------~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 264 ---------------------------------------NPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp ----------------------------------------TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred ---------------------------------------CCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 012358888999999999988762 11111 1222
Q ss_pred HHHHh----hccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHH
Q 002697 393 VIQAK----LSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (891)
Q Consensus 393 ~l~~~----l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 457 (891)
++.+. ++...+..+-.|-.|+..+.......+ .+.+..++|.++.+|.+++..|+..|+.|+
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~---~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP---KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 22222 221111227788888888777776554 357888999999999999999999998875
No 85
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.70 E-value=3.3e-06 Score=94.79 Aligned_cols=278 Identities=18% Similarity=0.166 Sum_probs=178.9
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHH
Q 002697 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 485 (891)
...|.+|+..+..++....+ ...++.++|+++.++.|+.+.||..|+.+|.++...+.+. .+.+..-+-+-++|.+-
T Consensus 437 ~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~-~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI-PPSDANIFPEYLFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC-CcccchhhHhhhhhhhH
Confidence 45678888888888876554 3468889999999999999999999999999888766543 12122223344677777
Q ss_pred HHhcC-CCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH--Hcccch---------hHHHHHHHHHHHHHHHhcc
Q 002697 486 KRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA--FGKYQR---------RNLRIVYDAIGTLADAVGF 553 (891)
Q Consensus 486 ~~l~d-~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~--l~~~~~---------~~~~~~~~al~~l~~~~~~ 553 (891)
..+.| ....||..-+..|+.+++.+.. |+. .-..+-.. ++..+. ..+..+..++..+..+
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~r----Fle-~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~s--- 585 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYR----FLE-LTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSS--- 585 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHH----HHH-HHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHH---
Confidence 77777 5567888888888888875421 111 11111111 222211 0111222222222211
Q ss_pred cCCchhhhhhhhHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCC
Q 002697 554 ELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQY 632 (891)
Q Consensus 554 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~ 632 (891)
.+... ++.+ ..+++.+..++..+|..=.. +.++..++..|+. .
T Consensus 586 -----------------Llsd~---~~~Vkr~Lle~i~~LC~FFGk~ksN--D~iLshLiTfLND-------------k- 629 (1431)
T KOG1240|consen 586 -----------------LLSDS---PPIVKRALLESIIPLCVFFGKEKSN--DVILSHLITFLND-------------K- 629 (1431)
T ss_pred -----------------HHcCC---chHHHHHHHHHHHHHHHHhhhcccc--cchHHHHHHHhcC-------------c-
Confidence 11111 1222 35566677777777763221 1256666666662 2
Q ss_pred chhHHHHHhhhHHHHHHHHhhh-HHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHH
Q 002697 633 DKEFVVCCLDLLSGLAEGLGSG-IESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAK 711 (891)
Q Consensus 633 d~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 711 (891)
||.+|..-++-+..++-.+|.. ..+| ++|+|...+.|..+.|...|++++..+++..- -=++++-+++....-
T Consensus 630 Dw~LR~aFfdsI~gvsi~VG~rs~sey-----llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l-l~K~~v~~i~~~v~P 703 (1431)
T KOG1240|consen 630 DWRLRGAFFDSIVGVSIFVGWRSVSEY-----LLPLLQQGLTDGEEAVIVSALGSLSILIKLGL-LRKPAVKDILQDVLP 703 (1431)
T ss_pred cHHHHHHHHhhccceEEEEeeeeHHHH-----HHHHHHHhccCcchhhHHHHHHHHHHHHHhcc-cchHHHHHHHHhhhh
Confidence 8888888888777776666765 4454 88999999999999999999999988887532 124666677777777
Q ss_pred hcCCCCCcCchhHhhhHHHHHHHHHHhch
Q 002697 712 QLNTPKLKETVSVANNACWAIGELAVKAR 740 (891)
Q Consensus 712 ~l~~~~~~~~~~v~~~a~~alg~l~~~~~ 740 (891)
.|-.+ |.=+|..++..+..++...+
T Consensus 704 lL~hP----N~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 704 LLCHP----NLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred heeCc----hHHHHHHHHHHHHHHHhhhh
Confidence 77788 67789998888888877665
No 86
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=0.00031 Score=76.10 Aligned_cols=472 Identities=15% Similarity=0.130 Sum_probs=245.4
Q ss_pred CchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHH
Q 002697 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (891)
Q Consensus 127 ~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~ 206 (891)
..-.+++=.+.++.++.++..|.....++..+.....+. --....+.+-.+...+..|..|+++|..
T Consensus 60 ~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedv-------------iivtsslmkD~t~~~d~yr~~AiR~L~~ 126 (865)
T KOG1078|consen 60 TEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDV-------------IIVTSSLMKDMTGKEDLYRAAAIRALCS 126 (865)
T ss_pred hhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhh-------------hhhhHHHHhhccCCCcchhHHHHHHHHh
Confidence 344567777888888888877776666664433311110 1123445555455577889999999998
Q ss_pred HhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 002697 207 FIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (891)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l 286 (891)
++... ....+..+++ +.+.+.++.+...++-.=..+.....+........+.+ ...+.+.-++..|+.++
T Consensus 127 I~d~~---m~~~iery~k---qaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqe----a~~s~~~m~QyHalglL 196 (865)
T KOG1078|consen 127 IIDGT---MLQAIERYMK---QAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQE----AVNSDNIMVQYHALGLL 196 (865)
T ss_pred hcCcc---hhHHHHHHHH---hHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhh----ccCcHHHHHHHHHHHHH
Confidence 87542 3333334343 33445555554443322222333333332222222221 12222334677788888
Q ss_pred HHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccccc
Q 002697 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (891)
Q Consensus 287 ~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~ 366 (891)
..+-++ .. -.+.+++..+.....+ +....|-
T Consensus 197 yqirk~--dr----la~sklv~~~~~~~~~-------------------------------------------~~~A~~~ 227 (865)
T KOG1078|consen 197 YQIRKN--DR----LAVSKLVQKFTRGSLK-------------------------------------------SPLAVCM 227 (865)
T ss_pred HHHHhh--hH----HHHHHHHHHHcccccc-------------------------------------------chhHHHH
Confidence 777554 11 1123333332211000 0111121
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCC
Q 002697 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 446 (891)
.-+.+..+++.. ......+++++...+.+.. -.+-..|..++..+....+..+.+ .+..+-..+..+.
T Consensus 228 lir~~~~~l~~~-----~~~~s~~~~fl~s~l~~K~---emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~ 295 (865)
T KOG1078|consen 228 LIRIASELLKEN-----QQADSPLFPFLESCLRHKS---EMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPK 295 (865)
T ss_pred HHHHHHHHhhhc-----ccchhhHHHHHHHHHhchh---HHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcH
Confidence 112222222222 2334467888888888776 556666666676666555554444 5666667788999
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH
Q 002697 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLM 526 (891)
Q Consensus 447 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~ 526 (891)
+.+|.+|..+|.+++...+... ..-. ..+-..+.|.+ |.-|..|+..+.+...+. -.+.++..+.
T Consensus 296 ~~lRfaAvRtLnkvAm~~P~~v------~~cN---~elE~lItd~N---rsIat~AITtLLKTG~e~---sv~rLm~qI~ 360 (865)
T KOG1078|consen 296 VALRFAAVRTLNKVAMKHPQAV------TVCN---LDLESLITDSN---RSIATLAITTLLKTGTES---SVDRLMKQIS 360 (865)
T ss_pred HHHHHHHHHHHHHHHHhCCccc------cccc---hhHHhhhcccc---cchhHHHHHHHHHhcchh---HHHHHHHHHH
Confidence 9999999999999998665321 1111 12223344555 445666677777665332 2233444444
Q ss_pred HHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccccchHH
Q 002697 527 MAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQP 606 (891)
Q Consensus 527 ~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 606 (891)
....+-+++.+..+.+++.+++...+. --..+|+.|...+.+.+ .-.....+++++..++......=.+-+..
T Consensus 361 ~fv~disDeFKivvvdai~sLc~~fp~------k~~~~m~FL~~~Lr~eG-g~e~K~aivd~Ii~iie~~pdsKe~~L~~ 433 (865)
T KOG1078|consen 361 SFVSDISDEFKIVVVDAIRSLCLKFPR------KHTVMMNFLSNMLREEG-GFEFKRAIVDAIIDIIEENPDSKERGLEH 433 (865)
T ss_pred HHHHhccccceEEeHHHHHHHHhhccH------HHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 555555555555667888887766542 33456667777776632 11222466777777665433221111122
Q ss_pred HHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHH
Q 002697 607 VFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFAL 686 (891)
Q Consensus 607 i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~ 686 (891)
++. .+. |-++..- ...+..-+|.+...--.+......++....-++..||..|+.+
T Consensus 434 LCe----fIE----------------Dce~~~i----~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~a 489 (865)
T KOG1078|consen 434 LCE----FIE----------------DCEFTQI----AVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSA 489 (865)
T ss_pred HHH----HHH----------------hccchHH----HHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHH
Confidence 221 222 1111111 1223333343322111112344455555555677888888888
Q ss_pred HhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHH
Q 002697 687 LGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (891)
Q Consensus 687 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~ 736 (891)
+..+.... . ...+.+...+.+++.+. +.++|+.|..++..+-
T Consensus 490 laKfg~~~-~---~l~~sI~vllkRc~~D~----DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 490 LAKFGAQD-V---VLLPSILVLLKRCLNDS----DDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHhcCC-C---CccccHHHHHHHHhcCc----hHHHHHHHHHHHHHhh
Confidence 87776222 1 22344555666777776 5688888888877665
No 87
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=8.3e-05 Score=76.20 Aligned_cols=293 Identities=14% Similarity=0.116 Sum_probs=182.4
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHH
Q 002697 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 485 (891)
|..|...+..+..+.....-.-.+.+..++..+.....||+..+|..|+..|++.++..+.. ...+...++..++
T Consensus 231 ~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~k-----v~th~~~~ldaii 305 (533)
T KOG2032|consen 231 ENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDK-----VRTHKTTQLDAII 305 (533)
T ss_pred ccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHH-----HHHhHHHHHHHHH
Confidence 88888877777766643221112567778888889999999999999999999999986543 6778889999999
Q ss_pred HHhcCC-CHHHHHHHHHHHHHHHHHh-cccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhh
Q 002697 486 KRILDT-NKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDI 563 (891)
Q Consensus 486 ~~l~d~-~~~v~~~a~~al~~l~~~~-~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ 563 (891)
.+|-|+ +..|+-.++.+|..+.+.. ...+.+|+-++--.+...+.+.+++.+..++..++.++...|..... .+.++
T Consensus 306 ~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~-~Fte~ 384 (533)
T KOG2032|consen 306 RGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEE-FFTEQ 384 (533)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchh-hhHHH
Confidence 988765 5889999999999998876 67899999999888888888888888888888888888877765441 34444
Q ss_pred hhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhh
Q 002697 564 LMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDL 643 (891)
Q Consensus 564 l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~ 643 (891)
+...+...+-...+..+. +..+.+...+..++.+ +.+.++...-+.++. +.. +
T Consensus 385 v~k~~~~lllhl~d~~p~---va~ACr~~~~~c~p~l--~rke~~~~~q~~ld~---------------~~~-~------ 437 (533)
T KOG2032|consen 385 VKKRLAPLLLHLQDPNPY---VARACRSELRTCYPNL--VRKELYHLFQESLDT---------------DMA-R------ 437 (533)
T ss_pred HHhccccceeeeCCCChH---HHHHHHHHHHhcCchh--HHHHHHHHHhhhhHH---------------hHH-H------
Confidence 443333322232222232 2222333333332221 111122211111110 000 1
Q ss_pred HHHHHHHHhhhHHhhhccchHHHHHH----HHhcCCChHHHHHHHHHHhHHHHhchHhhHHhH--HHHHHHHHHhcCCCC
Q 002697 644 LSGLAEGLGSGIESLVAQSNLRDMLL----QCCMDDASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPK 717 (891)
Q Consensus 644 l~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~ 717 (891)
+..+....-....++.+. +.-++. ..++..-+.+|..+...-+....+...+.-++. ..+...+.....++
T Consensus 438 ~q~Fyn~~c~~L~~i~~d--~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp- 514 (533)
T KOG2032|consen 438 FQAFYNQWCIQLNHIHPD--ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDP- 514 (533)
T ss_pred HHHHHHHHHHHHhhhCHH--HHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCC-
Confidence 111111111112222221 222222 122333447788887777777776665554544 46667777777777
Q ss_pred CcCchhHhhhHHHHHHHHHH
Q 002697 718 LKETVSVANNACWAIGELAV 737 (891)
Q Consensus 718 ~~~~~~v~~~a~~alg~l~~ 737 (891)
.++++..|..|++.+..
T Consensus 515 ---~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 515 ---RPEVTDSARKALDLLSV 531 (533)
T ss_pred ---CchhHHHHHHHhhhHhh
Confidence 67999999999988764
No 88
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=0.0026 Score=72.60 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhc-CCChH-HHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhcc--C---ChhhHHHHHHhHhhhhhcC
Q 002697 33 KSQIWQQLQQYSQ-FPDFN-NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--M---SPSNQQYIKSELLPCLGAA 105 (891)
Q Consensus 33 r~~a~~~L~~~~~-~p~~~-~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~--~---~~~~~~~i~~~ll~~L~~~ 105 (891)
-|..-..|.++.. -|... ..+..++.-..+.+-..|-.-.-.+-|.+...... . ..+.+..+.+.+.+.+.+-
T Consensus 292 ~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv 371 (1251)
T KOG0414|consen 292 PKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDV 371 (1251)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 4444555666544 45432 22222221011344555555444455555443332 1 1222333444555556678
Q ss_pred ChHHHHHHHHHHHHHHhhc--ccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 002697 106 DRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (891)
Q Consensus 106 ~~~vr~~~a~~l~~i~~~~--~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (891)
++.+|..+-++...|+... +.+.|.+++......+.+.+.-+|..|+..+..+...-+.
T Consensus 372 sa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 372 SAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred cHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999998864 7899999999999999999999999999999988876543
No 89
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.58 E-value=1.1e-07 Score=69.00 Aligned_cols=55 Identities=42% Similarity=0.664 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhh
Q 002697 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~ 460 (891)
|.+|.+|+++||.++..+++.+.++++.+++.+...++|+++.||.+|+|+||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999975
No 90
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.56 E-value=9.5e-07 Score=71.64 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH
Q 002697 449 IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA 528 (891)
Q Consensus 449 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~ 528 (891)
.|..++.+|..++..++.. ..++++.+++.++.++.|++.+||..||.+|.++++.++..+.+|++++++.|.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~-----~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-----ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL 76 (97)
T ss_pred chhHHHHHHHHHHHHchHh-----HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778889999988887753 78999999999999999999999999999999999999999999999999999999
Q ss_pred HcccchhHHHH
Q 002697 529 FGKYQRRNLRI 539 (891)
Q Consensus 529 l~~~~~~~~~~ 539 (891)
+.+.+..++..
T Consensus 77 ~~D~d~~Vr~~ 87 (97)
T PF12755_consen 77 SADPDENVRSA 87 (97)
T ss_pred HcCCchhHHHH
Confidence 99888777653
No 91
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=0.00061 Score=72.33 Aligned_cols=274 Identities=20% Similarity=0.226 Sum_probs=160.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC-----Cchh
Q 002697 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-----LPHE 297 (891)
Q Consensus 223 l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~-----~~~~ 297 (891)
...+..+.++.+..||..|.+.|..+.+ .-.+. ..+.......+.|.+++||..|+..+....+.. ...+
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcc--ccccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 4446667778889999999999998887 22222 345666677788999999999977655444331 0001
Q ss_pred hHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHH
Q 002697 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (891)
Q Consensus 298 ~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~ 377 (891)
. .......+..+...+. +.+|.+|..|+++|+.
T Consensus 275 e-~kl~D~aF~~vC~~v~----------------------------------------------D~sl~VRV~AaK~lG~ 307 (823)
T KOG2259|consen 275 E-EKLKDAAFSSVCRAVR----------------------------------------------DRSLSVRVEAAKALGE 307 (823)
T ss_pred h-hhhHHHHHHHHHHHHh----------------------------------------------cCceeeeehHHHHhch
Confidence 0 0111222222211111 1246667777766665
Q ss_pred HHHHcCcchhhhhHHHHHH--------------hhccC-------------------------------------CCcch
Q 002697 378 LSNVFGDEILPTLMPVIQA--------------KLSAS-------------------------------------GDEAW 406 (891)
Q Consensus 378 l~~~~~~~~~~~l~~~l~~--------------~l~~~-------------------------------------~~~~~ 406 (891)
+-.....-+.+.+-..+.. ..++. +++..
T Consensus 308 ~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~ 387 (823)
T KOG2259|consen 308 FEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFY 387 (823)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHH
Confidence 4433221111111000100 00000 02336
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHH
Q 002697 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK 486 (891)
Q Consensus 407 ~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 486 (891)
.+|.+|+..++.++-..+++ -...+.++...++|+-..||--|..++..++.++. .. ++.++.++.
T Consensus 388 EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~------i~----eeql~~il~ 453 (823)
T KOG2259|consen 388 EVRRAAVASLCSLATSSPGF----AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA------IR----EEQLRQILE 453 (823)
T ss_pred HHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe------ec----HHHHHHHHH
Confidence 78999999998888765543 33457778888899999999999999998888754 12 355667777
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhH
Q 002697 487 RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMP 566 (891)
Q Consensus 487 ~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~ 566 (891)
.|.|.+..||+..- .++..++-.-...+...+..+++.|..+.. .+...+.|++.+.+.-+ .++-.+|.
T Consensus 454 ~L~D~s~dvRe~l~----elL~~~~~~d~~~i~m~v~~lL~~L~kyPq-Drd~i~~cm~~iGqnH~------~lv~s~m~ 522 (823)
T KOG2259|consen 454 SLEDRSVDVREALR----ELLKNARVSDLECIDMCVAHLLKNLGKYPQ-DRDEILRCMGRIGQNHR------RLVLSNMG 522 (823)
T ss_pred HHHhcCHHHHHHHH----HHHHhcCCCcHHHHHHHHHHHHHHhhhCCC-CcHHHHHHHHHHhccCh------hhHHHHHH
Confidence 78888888888644 344444333344566677777777766522 23345667766655432 45555666
Q ss_pred HHHHHHH
Q 002697 567 PLIAKWQ 573 (891)
Q Consensus 567 ~l~~~l~ 573 (891)
.+.....
T Consensus 523 rfl~kh~ 529 (823)
T KOG2259|consen 523 RFLEKHT 529 (823)
T ss_pred HHHHhcc
Confidence 6665443
No 92
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.49 E-value=0.0013 Score=74.04 Aligned_cols=374 Identities=15% Similarity=0.137 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhcc
Q 002697 236 EVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (891)
Q Consensus 236 ~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~ 315 (891)
.+...++..|..+++...-...-.-..+++.++.+++..+.++...+..|+..++-....+..+. -..+++.+.+.+.
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~ 341 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhc
Confidence 34445667777777765433333335678888888888888888888999988875532333332 2345565555444
Q ss_pred CChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCc--chh-hhhHH
Q 002697 316 YADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EIL-PTLMP 392 (891)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~l~~ 392 (891)
...+ ..+..+..+|..++..-.- .++ ..++|
T Consensus 342 s~~~----------------------------------------------~l~~~aLrlL~NLSfd~~~R~~mV~~GlIP 375 (708)
T PF05804_consen 342 SENE----------------------------------------------DLVNVALRLLFNLSFDPELRSQMVSLGLIP 375 (708)
T ss_pred CCCH----------------------------------------------HHHHHHHHHHHHhCcCHHHHHHHHHCCCcH
Confidence 2111 1456677777666544321 221 23566
Q ss_pred HHHHhhccCCCcchHHHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhc-CCCChHHHHHHHHHHHhhHHHHhhhhCC
Q 002697 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (891)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 470 (891)
.+..++.+++ .|..++.+|..++..-. +.+-.+ .+.+|.+.+.+ ..+.+.+...+++.+-+++..-...
T Consensus 376 kLv~LL~d~~-----~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna--- 446 (708)
T PF05804_consen 376 KLVELLKDPN-----FREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA--- 446 (708)
T ss_pred HHHHHhCCCc-----hHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH---
Confidence 6777776544 45667777777765211 111111 12455555543 3355666655555555554321110
Q ss_pred CcchhhH-HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhc---ccchHhHHHHHHHHHHHHcccchhHHHHHHHHHH
Q 002697 471 QNGREQF-EKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAA---EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIG 545 (891)
Q Consensus 471 ~~~~~~~-~~~l~~l~~~l~-d~~~~v~~~a~~al~~l~~~~~---~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~ 545 (891)
.... ...++.+++... ..++ -.+..+.++..+-+ ..+.+|+.. |..++...+. -...++++|
T Consensus 447 ---qlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~----L~~~v~~~~~--ee~~vE~LG 513 (708)
T PF05804_consen 447 ---QLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFVDFIGD----LAKIVSSGDS--EEFVVECLG 513 (708)
T ss_pred ---HHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHHHHHHH----HHHHhhcCCc--HHHHHHHHH
Confidence 0000 122333433322 2221 12345555555432 223444444 4455555443 346688999
Q ss_pred HHHHHhcccCCchhhhh--hhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccccch--HHHHHHHHHHHHHHHHH
Q 002697 546 TLADAVGFELNQPVYLD--ILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFA--QPVFQRCINIIQTQQLA 621 (891)
Q Consensus 546 ~l~~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~ 621 (891)
.++.-.-+......++. .++|.+.+.+......+..+..++-.+|+++.. +...+.+ ..+++.++.++...+
T Consensus 514 iLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kq-- 589 (708)
T PF05804_consen 514 ILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQ-- 589 (708)
T ss_pred HHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhC--
Confidence 88875433221114443 578888888875443333224555555555532 2223332 246777777777543
Q ss_pred hhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhc
Q 002697 622 KVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVC 694 (891)
Q Consensus 622 ~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 694 (891)
.|.+++...+-++..++.. ++....++.+..+...+...++|.+..+|+.+=.++.-++.+-
T Consensus 590 ----------eDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 590 ----------EDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred ----------chHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 1566766666666666654 3333444444457788889999999999998877777666653
No 93
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.45 E-value=0.0028 Score=64.79 Aligned_cols=457 Identities=12% Similarity=0.085 Sum_probs=245.7
Q ss_pred CChHHHHHHHHHHHHHHhhc----ccCchHHHHHH---------HHHHhccCChhHHhHHHHHHHHHHhhchhcccc---
Q 002697 105 ADRHIRSTVGTIVSVVVQLG----GIAGWLELLQA---------LVTCLDSNDINHMEGAMDALSKICEDIPQVLDS--- 168 (891)
Q Consensus 105 ~~~~vr~~~a~~l~~i~~~~----~~~~w~~ll~~---------L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~--- 168 (891)
....||..+-.++....+.. ..++|.-++|. +.-.++++++..|..|++++..+.+.....+..
T Consensus 8 ~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~ 87 (728)
T KOG4535|consen 8 YQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAED 87 (728)
T ss_pred HHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 34567777777777666542 45788777753 233467889999999999999988765433211
Q ss_pred CCCCCCCcc-------hhhhHHHHHHhhc-CCCHHHHHHHHHHHHHHhcccchhhH--HhHHHHHHHHHHhhCCCCHHHH
Q 002697 169 DVPGLAECP-------INIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALF--VSMDQYLQGLFLLSNDPSAEVR 238 (891)
Q Consensus 169 ~~~~~~~~~-------~~~l~~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~v~ 238 (891)
--+..|... +.+....++..+. ..++.+....++|+..++..-|-+-. ..+-.+++.+...+.+.++.|+
T Consensus 88 ~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~ 167 (728)
T KOG4535|consen 88 TSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVR 167 (728)
T ss_pred cCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChh
Confidence 011112111 1222223333343 34677888999999999877653221 2344567777788888888999
Q ss_pred HHHHHHHHHHHhhCh---hhh-------------hHhH------H------H-----------------HHHHHH-----
Q 002697 239 KLVCAAFNLLIEVRP---SFL-------------EPHL------R------N-----------------LFEYML----- 268 (891)
Q Consensus 239 ~~~~~~l~~l~~~~~---~~~-------------~~~l------~------~-----------------l~~~~~----- 268 (891)
..++..+..++.... +.- .+|+ . . ++..+.
T Consensus 168 vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~ 247 (728)
T KOG4535|consen 168 VSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVL 247 (728)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeec
Confidence 998888877765421 100 0000 0 0 000000
Q ss_pred ------------hhcCC--CCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCC
Q 002697 269 ------------QVNKD--TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (891)
Q Consensus 269 ------------~~~~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~ 334 (891)
++..+ ....+|.+++..+..++.+ ....+-++-++...+-..+.....+
T Consensus 248 ~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~---~~~~~~~~~~l~RvI~~~~~~~~p~-------------- 310 (728)
T KOG4535|consen 248 PKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARY---FSMTQAYLMELGRVICKCMGEADPS-------------- 310 (728)
T ss_pred CCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccCCCCChH--------------
Confidence 00110 1223677777777777665 2334444445544443333322111
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhh-----h-hH-HHHHHhh---------
Q 002697 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP-----T-LM-PVIQAKL--------- 398 (891)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~-----~-l~-~~l~~~l--------- 398 (891)
+...+..+++.+....+.+..| . .. ++-..++
T Consensus 311 --------------------------------~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~Y 358 (728)
T KOG4535|consen 311 --------------------------------IQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALY 358 (728)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhh
Confidence 2333555555555444311110 0 11 1111111
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC-CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH
Q 002697 399 SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF 477 (891)
Q Consensus 399 ~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 477 (891)
.+.. ...+-+++.++..|.......+..--....+......+| .+..||.+|..+++.+.-+-.-. ....+.
T Consensus 359 Ds~~---~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr----~d~~fv 431 (728)
T KOG4535|consen 359 DSEH---PTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLR----QDVIFV 431 (728)
T ss_pred hhcC---CCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchh----hhHHHH
Confidence 1122 445566666666665433333322222344444444444 56688999998888765432111 133445
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc---cch----HhHHHHHHHHHHHHcc---cchhHHHHHHHHHHHH
Q 002697 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE---ELA----PRLEIILQHLMMAFGK---YQRRNLRIVYDAIGTL 547 (891)
Q Consensus 478 ~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~---~~~----~~l~~il~~l~~~l~~---~~~~~~~~~~~al~~l 547 (891)
......++..+.|..-.+|+.++++++++....-. ... .+....+..+...-.. .+.+++..++++++++
T Consensus 432 ~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnl 511 (728)
T KOG4535|consen 432 ADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNL 511 (728)
T ss_pred HHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhH
Confidence 66667777777787788999999999999987622 211 2333344443333322 2345666889999998
Q ss_pred HHHhcccCCchhhhhhhhHHHHHHHHcC--C-CCCcchHhHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHH
Q 002697 548 ADAVGFELNQPVYLDILMPPLIAKWQQL--P-NSDKDLFPLLECFTSIAQALGA--GFTQFAQPVFQRCINIIQTQQ 619 (891)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~-~~~~~~~~~~~~l~~i~~~~~~--~~~~~~~~i~~~l~~~l~~~~ 619 (891)
.+.+.+-.. .-+..++..-+..+... . ..-+..++++-++|.+.+.-.- .-.+.++.+++.+...+.+..
T Consensus 512 lQvlq~i~~--~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~ 586 (728)
T KOG4535|consen 512 LQFLQPIEK--PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK 586 (728)
T ss_pred HHHHHHhhh--ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence 876653221 23333333222221111 0 0112236788888887764221 224678889998887777543
No 94
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.41 E-value=0.0013 Score=67.25 Aligned_cols=464 Identities=13% Similarity=0.137 Sum_probs=252.4
Q ss_pred CCCHHHHHHHHHHHHHhHH--------hhhccCChhhHH-HHHHhHhhhhhcCChHHHHHHHHHHHHHHhh---------
Q 002697 62 GKSVEIRQAAGLLLKNNLR--------TAYKSMSPSNQQ-YIKSELLPCLGAADRHIRSTVGTIVSVVVQL--------- 123 (891)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~--------~~w~~~~~~~~~-~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~--------- 123 (891)
.....+|+.|.+++-..++ ..|..+-++.-+ .--..++-+|+|++...|..+-++.+.|...
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~ 86 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAE 86 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3456788888877765543 367764333221 1112344578899999999988888887532
Q ss_pred -cccCchHH-----------HHHHHHHHh-ccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhc
Q 002697 124 -GGIAGWLE-----------LLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (891)
Q Consensus 124 -~~~~~w~~-----------ll~~L~~~l-~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 190 (891)
.++..+.. +...|...+ ....+.+.-..+++|..++...+...- + -..+.+++..+-+++.
T Consensus 87 ~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l-~-----~~~~~~~~~~ik~~i~ 160 (728)
T KOG4535|consen 87 DTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRL-K-----LSLLTKVWNQIKPYIR 160 (728)
T ss_pred ccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHH-H-----HHHHHHHHHHHHHHhh
Confidence 12333321 112222222 233556666788888888876654210 0 0234566777888889
Q ss_pred CCCHHHHHHHHHHHHHHhcccc--hhhHHhH----------------HHHHH----------------------------
Q 002697 191 SPHTSLRKLSLGSVNQFIMLMP--SALFVSM----------------DQYLQ---------------------------- 224 (891)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~~~~--~~~~~~~----------------~~~l~---------------------------- 224 (891)
+.++.||..++..+..++.... +++...+ +...+
T Consensus 161 ~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~ 240 (728)
T KOG4535|consen 161 HKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRL 240 (728)
T ss_pred cCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeee
Confidence 9999999999999888764310 1111000 00000
Q ss_pred ----------------HHHHhhCCC--CHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 002697 225 ----------------GLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (891)
Q Consensus 225 ----------------~l~~~~~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l 286 (891)
.....+... -..+|-.++++|..++... .....|+-++...+...+.+.++++...+..++
T Consensus 241 ~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~-~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll 319 (728)
T KOG4535|consen 241 CISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF-SMTQAYLMELGRVICKCMGEADPSIQLHGAKLL 319 (728)
T ss_pred eeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCCCChHHHHHHHHHH
Confidence 011111100 1246777777777776543 344456666666666677778888877776655
Q ss_pred HHhhccCCchhhHHhhhhh-----hHHH-HHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCcc
Q 002697 287 HSYFEAQLPHENLKEFLPR-----LVPV-LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDD 360 (891)
Q Consensus 287 ~~l~~~~~~~~~~~~~l~~-----li~~-ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d 360 (891)
..+... .+..+.++ +... +...+....-..+. +|
T Consensus 320 ~~lg~~-----lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~---------------------------------YD-- 359 (728)
T KOG4535|consen 320 EELGTG-----LIQQYKPDSTKAPDQRAPFWTMMLNGPLPRAL---------------------------------YD-- 359 (728)
T ss_pred HHHHHH-----HhhhcCCCcccchhhhccHHHHHccCCChhhh---------------------------------hh--
Confidence 544322 11111111 0000 00111100000000 11
Q ss_pred ccccccHHHHHHHHHHHHHHHc----CcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcch-hhhhhhHHHHH
Q 002697 361 IVNVWNLRKCSAAALDVLSNVF----GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIV 435 (891)
Q Consensus 361 ~~~~~~~r~~a~~~l~~l~~~~----~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~-~~~~~~l~~i~ 435 (891)
....+...++...+..++..- ++. -....+.+.....+. ++--+|-+|+.+++...-+.. .....+.....
T Consensus 360 -s~~~Tl~~s~Cdals~i~~~~f~~lpn~-~~T~~~~Fl~GC~d~--~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa 435 (728)
T KOG4535|consen 360 -SEHPTLQASACDALSSILPEAFSNLPND-RQTLCITFLLGCNDS--KNRLVKAAASRALGVYVLHPCLRQDVIFVADAA 435 (728)
T ss_pred -hcCCCchhHHHHHHhhcCchhhcCCCCc-chhhhHHHHhcccch--HHHHHHHHHHhhceeEEeccchhhhHHHHHHHH
Confidence 111234445555555444332 221 112333333333322 225677788887776554322 22234555667
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCC-C-cchhhHHHHHHHHHHHhc--C-CCHHHHHHHHHHHHHHHHHh
Q 002697 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH-Q-NGREQFEKVLMGLLKRIL--D-TNKRVQEAACSAFATLEEEA 510 (891)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~-~-~~~~~~~~~l~~l~~~l~--d-~~~~v~~~a~~al~~l~~~~ 510 (891)
..++..+.|..-.+|.-++|++|.+...+...+.+ . .........+..++.... + .+-+|+..|..+|+++....
T Consensus 436 ~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl 515 (728)
T KOG4535|consen 436 NAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL 515 (728)
T ss_pred HHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH
Confidence 77888889999999999999999998866432111 0 111222233333333221 2 13679999999999998877
Q ss_pred cccchHhHHHHHHHHHHHHc-----ccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCC
Q 002697 511 AEELAPRLEIILQHLMMAFG-----KYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLP 576 (891)
Q Consensus 511 ~~~~~~~l~~il~~l~~~l~-----~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 576 (891)
.....+-+..+++.=...+. ....+++-.++.+++++.+.-.-.+.+.++...++|.|...+.+..
T Consensus 516 q~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~ 586 (728)
T KOG4535|consen 516 QPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK 586 (728)
T ss_pred HHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence 65555555555554333322 2233677789999999998644434444788899998888877643
No 95
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.0016 Score=70.87 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhH
Q 002697 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (891)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~ 91 (891)
.-+-+..+.+..+|-|.. .|+..+..++++.. ..+.+.....+..+.+..++.+|..|.-.|-+. ++....
T Consensus 62 ate~ff~~tKlfQskd~~-LRr~vYl~Ikels~isedviivtsslmkD~t~~~d~yr~~AiR~L~~I-------~d~~m~ 133 (865)
T KOG1078|consen 62 ATELFFAITKLFQSKDVS-LRRMVYLAIKELSKISEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSI-------IDGTML 133 (865)
T ss_pred HHHHHHHHHHHHhhcCHH-HHHHHHHHHhhccccchhhhhhhHHHHhhccCCCcchhHHHHHHHHhh-------cCcchh
Confidence 344566677777888888 89999999988765 344444444444433455666666665444322 333333
Q ss_pred HHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhc--ccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhh--------
Q 002697 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICED-------- 161 (891)
Q Consensus 92 ~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~--~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~-------- 161 (891)
..+-..+-+++.+.++.++..+--.--.+.... -...|..-. .....+.+..++.-++..|..+.+.
T Consensus 134 ~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~nei---qea~~s~~~m~QyHalglLyqirk~drla~skl 210 (865)
T KOG1078|consen 134 QAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEV---QEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKL 210 (865)
T ss_pred HHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhh---hhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 444444444555555555443321111121111 112332211 1111111111111222222211110
Q ss_pred ---chh------------------ccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHH
Q 002697 162 ---IPQ------------------VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD 220 (891)
Q Consensus 162 ---~~~------------------~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 220 (891)
+.. .+..+ +.....+++.+-..+.+.+..|...|.+++..+-...+..+.+
T Consensus 211 v~~~~~~~~~~~~A~~~lir~~~~~l~~~-----~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p--- 282 (865)
T KOG1078|consen 211 VQKFTRGSLKSPLAVCMLIRIASELLKEN-----QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP--- 282 (865)
T ss_pred HHHHccccccchhHHHHHHHHHHHHhhhc-----ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch---
Confidence 000 00000 1112355666666777777777777777766665554444444
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhh
Q 002697 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (891)
Q Consensus 221 ~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~ 256 (891)
-+..+..++..+....|-.+...|..++..+|...
T Consensus 283 -avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 283 -AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred -HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 23444445666777788888888888887777554
No 96
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.38 E-value=1.8e-06 Score=75.74 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=87.8
Q ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhh
Q 002697 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (891)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 468 (891)
+++.+.+.+.+.+ |..|+.++.+++.++.+..+.....+. .+++.+.+.++|+++.++..++|++++++...+..
T Consensus 8 ~i~~l~~~l~~~~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~- 83 (120)
T cd00020 8 GLPALVSLLSSSD---ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN- 83 (120)
T ss_pred ChHHHHHHHHcCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-
Confidence 5666777778777 999999999999999875544444444 68899999999999999999999999998754321
Q ss_pred CCCcchhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002697 469 GHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (891)
Q Consensus 469 ~~~~~~~~~-~~~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (891)
..... ..+++.+.+.+.+.+..++..++++|.+++
T Consensus 84 ----~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 84 ----KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ----HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 12222 347889999999889999999999999876
No 97
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=0.012 Score=67.42 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhh
Q 002697 701 RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLA 780 (891)
Q Consensus 701 ~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 780 (891)
.+..+.|.+.+..+.+....+++.+.+|..|+|.+.--.. .|.+.-++.++.++..+. .+.+|.|+..++|.+.
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp--~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSP--SPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCC--Cceeeecchheccchh
Confidence 4455666666666554433357899999999999864432 466667788888888654 4789999999999999
Q ss_pred hhcCCccCcchhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChhhhHhhHHHHhhHhhcccccCchhHHHHHHHHHH
Q 002697 781 WVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLH 860 (891)
Q Consensus 781 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 860 (891)
..+|..+-|+. +.+...|.+ ++...|+.++..+..|+-..=-.+...++....++.. +.++..+.++..+.
T Consensus 990 v~fpnlie~~T----~~Ly~rL~D-~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D----~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 990 VRFPNLIEPWT----EHLYRRLRD-ESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLED----PNAEISDLAKSFFK 1060 (1251)
T ss_pred hhcccccchhh----HHHHHHhcC-ccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcC----CcHHHHHHHHHHHH
Confidence 99988765443 444555555 5567788999999998886554455555555555544 45567777776666
Q ss_pred HHHh
Q 002697 861 GYKQ 864 (891)
Q Consensus 861 ~~~~ 864 (891)
.+..
T Consensus 1061 Els~ 1064 (1251)
T KOG0414|consen 1061 ELSS 1064 (1251)
T ss_pred Hhhh
Confidence 5554
No 98
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00086 Score=71.27 Aligned_cols=306 Identities=13% Similarity=0.117 Sum_probs=184.0
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccch
Q 002697 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS 213 (891)
Q Consensus 134 ~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~ 213 (891)
.-|....++.+..+|..|+..|-.+.+.+. .-..+.....+.+.|....||.+|++.+.-+....|.
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-------------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFK-------------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhccccc-------------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCC
Confidence 336677777888888888888877766221 1255678888899999999999999999998877631
Q ss_pred ------hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHH-HHHHHHHhhcCCCCHHHHHHHHHHH
Q 002697 214 ------ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFW 286 (891)
Q Consensus 214 ------~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l 286 (891)
.-....+..+..++..+.|.+..+|..+.+.|+.+-....+++...++ .++. ..|+.
T Consensus 268 ~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms-----------~lRRk----- 331 (823)
T KOG2259|consen 268 PLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS-----------RLRRK----- 331 (823)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhh-----------hhhhh-----
Confidence 112344566778888888999999999999999887766555443332 1111 11111
Q ss_pred HHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhh-hhcccCCCCCCCCCCCcc-cccccCCCCCCCCCCCcccccc
Q 002697 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV-EAEEDESLPDRDQDLKPR-FHSSRLHGSENPEDDDDDIVNV 364 (891)
Q Consensus 287 ~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~d~d~~~~ 364 (891)
..--+. + +..+.. ...+. -..| ++.|.|....+.+.|-|. -....+ .+.| ++.
T Consensus 332 r~ahkr---p---k~l~s~--------GewSs--Gk~~~advpsee~d~~~~siI~sGACGA~V---hGlE------DEf 386 (823)
T KOG2259|consen 332 RTAHKR---P---KALYSS--------GEWSS--GKEWNADVPSEEDDEEEESIIPSGACGALV---HGLE------DEF 386 (823)
T ss_pred hhcccc---h---HHHHhc--------CCccc--CccccccCchhhccccccccccccccceee---eech------HHH
Confidence 000000 0 000000 00000 0001 111111100111111111 000000 1111 124
Q ss_pred ccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC
Q 002697 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD 444 (891)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d 444 (891)
+.+|.+|...+..|+...++- -...+.++..+++++. ..+|.-|+.+|..|+... ..-++.++.++..|.|
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~F-A~~aldfLvDMfNDE~---~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D 457 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGF-AVRALDFLVDMFNDEI---EVVRLKAIFALTMISVHL-----AIREEQLRQILESLED 457 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHh
Confidence 579999999999999887652 2356788888999887 899999999999998752 1224567888889999
Q ss_pred CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 002697 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (891)
Q Consensus 445 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (891)
.++.||.+.-..|+..- + ...+.+.-++..+++.+.- -|.=|.....++..|-++-+.
T Consensus 458 ~s~dvRe~l~elL~~~~--~-------~d~~~i~m~v~~lL~~L~k-yPqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 458 RSVDVREALRELLKNAR--V-------SDLECIDMCVAHLLKNLGK-YPQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred cCHHHHHHHHHHHHhcC--C-------CcHHHHHHHHHHHHHHhhh-CCCCcHHHHHHHHHHhccChh
Confidence 99999999877776421 1 1344556666667666642 122244566677777665433
No 99
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.33 E-value=1.1e-06 Score=80.29 Aligned_cols=135 Identities=21% Similarity=0.320 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccC----CCC----CCCcch
Q 002697 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD----VPG----LAECPI 178 (891)
Q Consensus 107 ~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~----~~~----~~~~~~ 178 (891)
+.||++++.+++.|+.+++|..||++++.+.+.+++ ++.....++.+|..+.+++....... .+. .+....
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999888 57888899999999999886511100 000 011223
Q ss_pred hhhHHHHHHhhcCCC----HHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002697 179 NIFLPRLLQFFQSPH----TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (891)
Q Consensus 179 ~~l~~~l~~~l~~~~----~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l 245 (891)
+.++..+.+.++... ..+...+++|+..++.+.+...... ..+++.++..++++ +.+..|++||
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 445555555555432 8899999999999999887554433 34788888888554 4577888775
No 100
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.012 Score=63.91 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=87.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhH
Q 002697 667 MLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPI 746 (891)
Q Consensus 667 ~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~ 746 (891)
+|--..+|.+.+||.+|+-.||-++-.-++.+ |..+..|..+. |..||-.|+.+||-.+...|..
T Consensus 559 lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~--------~s~V~lLses~---N~HVRyGaA~ALGIaCAGtG~~---- 623 (929)
T KOG2062|consen 559 LLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL--------PSTVSLLSESY---NPHVRYGAAMALGIACAGTGLK---- 623 (929)
T ss_pred hhcccccccchHHHHHHHHHheeeEecChhhc--------hHHHHHHhhhc---ChhhhhhHHHHHhhhhcCCCcH----
Confidence 33345678999999999999998776554433 33344455554 7899999999999887665532
Q ss_pred HHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccCC
Q 002697 747 VMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMI 805 (891)
Q Consensus 747 ~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~ 805 (891)
..+..|-|+..++. .=+|+.|+++++.+...+.+..-|.+..|-..+.+.+.++
T Consensus 624 --eAi~lLepl~~D~~---~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 624 --EAINLLEPLTSDPV---DFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred --HHHHHHhhhhcChH---HHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 22444556666664 6789999999999999888888888888888888877664
No 101
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0061 Score=66.08 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhcCCChHHHHHHHhhc-cCCCCHHHHHHHHHHHHHhHHhhhccCChh-
Q 002697 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQ-YSQFPDFNNYLAFILAR-AEGKSVEIRQAAGLLLKNNLRTAYKSMSPS- 89 (891)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~-~~~~p~~~~~l~~il~~-~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~- 89 (891)
.-.++.+.|+ ++|.+ ++-.|.+.+-. +.+...+...+.+|+.- .++.+ ..||+.+.-.|.-+|.-
T Consensus 21 ~~~~ik~~Le---k~~~~-~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~--------~elKKLly~ywE~vPKt~ 88 (948)
T KOG1058|consen 21 SEDEIKEKLE---KGDDE-VKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRN--------HELKKLLYYYWELVPKTD 88 (948)
T ss_pred chHHHHHHHh---cCChH-HHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCc--------hHHHHHHHHHHHHccccC
Confidence 3445666555 46666 77777777654 34433344444455431 01222 34777778888865431
Q ss_pred ----hHH---HHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhc
Q 002697 90 ----NQQ---YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (891)
Q Consensus 90 ----~~~---~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~ 162 (891)
.++ -+-+..-+-|++|+..||-. .+.-+++..-++-...++|.+.+++......+|+.|..++..|.+.+
T Consensus 89 ~dgkl~~EMILvcna~RkDLQHPNEyiRG~---TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~ 165 (948)
T KOG1058|consen 89 SDGKLLHEMILVCNAYRKDLQHPNEYIRGS---TLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF 165 (948)
T ss_pred CCcccHHHHHHHHHHHhhhccCchHhhcch---hhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh
Confidence 111 12233345677899999987 45555555555667788999999999999999999999999998864
Q ss_pred hhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHH
Q 002697 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGS 203 (891)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~ 203 (891)
...+ ++ .++++..++. ++.++..+..|+-.
T Consensus 166 ~~L~-pD--------apeLi~~fL~--~e~DpsCkRNAFi~ 195 (948)
T KOG1058|consen 166 EHLI-PD--------APELIESFLL--TEQDPSCKRNAFLM 195 (948)
T ss_pred hhhc-CC--------hHHHHHHHHH--hccCchhHHHHHHH
Confidence 3322 22 2444444432 34455555555433
No 102
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.013 Score=63.10 Aligned_cols=278 Identities=13% Similarity=0.182 Sum_probs=155.2
Q ss_pred HHHHHHhHhhhhhc--CChHHHHHHHHHHHHHHhhcc----cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 002697 91 QQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGG----IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (891)
Q Consensus 91 ~~~i~~~ll~~L~~--~~~~vr~~~a~~l~~i~~~~~----~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (891)
.+..-.-+-+.|.+ ....||+.+|-++-.+.+..+ ++.| ...+.+++++.+-.+.-++...+..+++..++
T Consensus 144 ~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W---~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~ 220 (938)
T KOG1077|consen 144 AEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEW---AQRIVHLLDDQHMGVVTAATSLIEALVKKNPE 220 (938)
T ss_pred HHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhH---HHHHHHHhCccccceeeehHHHHHHHHHcCCH
Confidence 34444445566654 356789999999999998753 3455 44566667776666666666667777766555
Q ss_pred ccccCCCCCCCcchhhhHHHHHHhhc-------------CCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhC
Q 002697 165 VLDSDVPGLAECPINIFLPRLLQFFQ-------------SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN 231 (891)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~~l~-------------~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 231 (891)
..... ++.-+..+..... -|.|-.....++.|..+=.--.......+...++.++..++
T Consensus 221 ~yk~~--------~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~ 292 (938)
T KOG1077|consen 221 SYKTC--------LPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQ 292 (938)
T ss_pred HHhhh--------HHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccc
Confidence 33221 1111222222211 14566666666666655111111222333444555555444
Q ss_pred CC--CHHHH-----H-HHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhh
Q 002697 232 DP--SAEVR-----K-LVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL 303 (891)
Q Consensus 232 ~~--~~~v~-----~-~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l 303 (891)
++ +..+. . -.++++......+++. ..+..-+..+-+.+.+.+..+|..|+|.+..++..+.....++.+.
T Consensus 293 ~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~--~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~ 370 (938)
T KOG1077|consen 293 EPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP--ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQ 370 (938)
T ss_pred cCccccchHhhhhHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHH
Confidence 21 11111 1 1234444443333322 1222333444445667778889999999888887755666777776
Q ss_pred hhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcC
Q 002697 304 PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG 383 (891)
Q Consensus 304 ~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~ 383 (891)
+.++..+ .. + .+-++|+.|.++|-.++..-.
T Consensus 371 d~Ii~sL----kt-e--------------------------------------------rDvSirrravDLLY~mcD~~N 401 (938)
T KOG1077|consen 371 DTIINSL----KT-E--------------------------------------------RDVSIRRRAVDLLYAMCDVSN 401 (938)
T ss_pred HHHHHHh----cc-c--------------------------------------------cchHHHHHHHHHHHHHhchhh
Confidence 6655544 10 0 012589999999887776553
Q ss_pred cchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHH
Q 002697 384 DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVA 436 (891)
Q Consensus 384 ~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~ 436 (891)
. ..++.-+.+++.+.+ +..|+.-..-.+.+++....++.-|++-+++
T Consensus 402 a---k~IV~elLqYL~tAd---~sireeivlKvAILaEKyAtDy~WyVdviLq 448 (938)
T KOG1077|consen 402 A---KQIVAELLQYLETAD---YSIREEIVLKVAILAEKYATDYSWYVDVILQ 448 (938)
T ss_pred H---HHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 3 344555556666677 8889888777888888665544444444433
No 103
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.22 E-value=0.019 Score=64.36 Aligned_cols=161 Identities=12% Similarity=0.087 Sum_probs=113.3
Q ss_pred HHHHHHHHH-HHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhcCChHHH
Q 002697 32 DKSQIWQQL-QQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIR 110 (891)
Q Consensus 32 ~r~~a~~~L-~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~~~~vr 110 (891)
.|..|.+.+ .++....++..++.+++..-.+.+.+++.+.-.+|.+. .+..|+..-...+.+.+-+.++++.+|
T Consensus 35 ~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~y-----ak~~P~~~lLavNti~kDl~d~N~~iR 109 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERY-----AKLKPELALLAVNTIQKDLQDPNEEIR 109 (757)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHhhccCCCHHHH
Confidence 677776665 45665555656666666543466788888877776433 223333334445677778889999999
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhc
Q 002697 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (891)
Q Consensus 111 ~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 190 (891)
..+-..++.+- -+.-|+.+++.+.++++++++.+|..|..++..+.+.-.+.... ....-.+...+.
T Consensus 110 ~~AlR~ls~l~---~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~----------~g~~~~l~~l~~ 176 (757)
T COG5096 110 GFALRTLSLLR---VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE----------LGLIDILKELVA 176 (757)
T ss_pred HHHHHHHHhcC---hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhc----------ccHHHHHHHHhh
Confidence 98666666543 35678999999999999999999999999999988754443211 113444555667
Q ss_pred CCCHHHHHHHHHHHHHHhcc
Q 002697 191 SPHTSLRKLSLGSVNQFIML 210 (891)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~~ 210 (891)
+.+|.|...|+.++..+-..
T Consensus 177 D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 177 DSDPIVIANALASLAEIDPE 196 (757)
T ss_pred CCCchHHHHHHHHHHHhchh
Confidence 99999999999998887644
No 104
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.014 Score=62.83 Aligned_cols=408 Identities=13% Similarity=0.136 Sum_probs=230.0
Q ss_pred ChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc----C---CC-----hHHHHHHHhhccCCCCHHHHHHHHHHH-H
Q 002697 10 QEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ----F---PD-----FNNYLAFILARAEGKSVEIRQAAGLLL-K 76 (891)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~----~---p~-----~~~~l~~il~~~~~~~~~~R~~a~~~L-k 76 (891)
.-.+++-|..=++++.+-+. .+|+..++|-++.. . .+ +...|+.|..- +.+...-|+-++-| +
T Consensus 9 gmrGL~vFISDlRncq~kea--E~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~ll--g~dIdFGhmEaV~LLs 84 (938)
T KOG1077|consen 9 GMRGLAVFISDLRNCQSKEA--EEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLL--GYDIDFGHMEAVNLLS 84 (938)
T ss_pred CchhHHHHHHHhhhhhchHH--HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHh--cCccccchHHHHHHhh
Confidence 34467777776666665443 67888888866431 1 11 34445555432 33444444444332 2
Q ss_pred HhH-H-hh--h---ccC---ChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccC--C
Q 002697 77 NNL-R-TA--Y---KSM---SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN--D 144 (891)
Q Consensus 77 ~~i-~-~~--w---~~~---~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~--~ 144 (891)
... . +. | ..+ +.+.-..+.+.+.+-|.+.++....-+-++++.|...+.. ..+-+.+-.++.++ .
T Consensus 85 s~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~---ea~~~DI~KlLvS~~~~ 161 (938)
T KOG1077|consen 85 SNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMA---EAFADDIPKLLVSGSSM 161 (938)
T ss_pred cCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHH---HHhhhhhHHHHhCCcch
Confidence 111 0 00 0 001 1222233334444445566777667777788887765422 23333444555554 3
Q ss_pred hhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHH
Q 002697 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQ 224 (891)
Q Consensus 145 ~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~ 224 (891)
..+|..|..+|-.+.+..++.... ..+...++.+|.|.+..|-.++...+..++...|+.+..-++.-+.
T Consensus 162 ~~vkqkaALclL~L~r~spDl~~~----------~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs 231 (938)
T KOG1077|consen 162 DYVKQKAALCLLRLFRKSPDLVNP----------GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVS 231 (938)
T ss_pred HHHHHHHHHHHHHHHhcCccccCh----------hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHH
Confidence 568888888888888877665432 5678899999999998888999999999998888877665554444
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhChhhh--hHhHH-HHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHh
Q 002697 225 GLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL--EPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301 (891)
Q Consensus 225 ~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~--~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 301 (891)
.+........... . .+.-.+ .|.+. .++..+...-...|+.+|....+++..+..........+.
T Consensus 232 ~L~riv~~~~t~~-----------q-dYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~ 299 (938)
T KOG1077|consen 232 RLSRIVVVVGTSL-----------Q-DYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKK 299 (938)
T ss_pred HHHHHHhhcccch-----------h-hceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccc
Confidence 4333221110000 0 010001 11111 1221111111234555666666665554332100000000
Q ss_pred hhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHH-HHHHHHHHH
Q 002697 302 FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS-AAALDVLSN 380 (891)
Q Consensus 302 ~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a-~~~l~~l~~ 380 (891)
.-. -+...+. .+++ .++.
T Consensus 300 vq~------------------------------------------------------------~na~naVLFeaI-~l~~ 318 (938)
T KOG1077|consen 300 VQH------------------------------------------------------------SNAKNAVLFEAI-SLAI 318 (938)
T ss_pred hHh------------------------------------------------------------hhhHHHHHHHHH-HHHH
Confidence 000 0011111 1111 1222
Q ss_pred HcC--cchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhc--chhhhhhhHHHHHHHHhhhcC-CCChHHHHHHHH
Q 002697 381 VFG--DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG--CIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCW 455 (891)
Q Consensus 381 ~~~--~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~--~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~ 455 (891)
++. ++.+...+..+-+++++.+ ...|+-|+-.+..++.. ..+.++.+ ...++..|+ +++..||..|..
T Consensus 319 h~D~e~~ll~~~~~~Lg~fls~rE---~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDvSirrravD 391 (938)
T KOG1077|consen 319 HLDSEPELLSRAVNQLGQFLSHRE---TNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDVSIRRRAVD 391 (938)
T ss_pred HcCCcHHHHHHHHHHHHHHhhccc---ccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccchHHHHHHHH
Confidence 221 2445556666777788877 88999988888777653 22334444 455666777 788899999988
Q ss_pred HHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHH
Q 002697 456 TLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHL 525 (891)
Q Consensus 456 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l 525 (891)
.|-.++. ......++..+++.+...+..+|+....=+.-+++....++.-|++.+++-+
T Consensus 392 LLY~mcD-----------~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 392 LLYAMCD-----------VSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred HHHHHhc-----------hhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 8876664 3456788888888888888999999888888888888888888888777644
No 105
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.16 E-value=7.4e-05 Score=69.93 Aligned_cols=133 Identities=18% Similarity=0.332 Sum_probs=103.2
Q ss_pred ChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHH
Q 002697 144 DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYL 223 (891)
Q Consensus 144 ~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l 223 (891)
++.+|..++.+++.++..++.. ++..+|.+...|.|+++.||..|+.++..++... +.+.-+.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~------------ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~ 65 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL------------VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---MIKVKGQLF 65 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH------------HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ceeehhhhh
Confidence 4678999999999999877654 3567899999999999999999999999988543 222223445
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhh-ChhhhhHhHHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHhhc
Q 002697 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHSYFE 291 (891)
Q Consensus 224 ~~l~~~~~~~~~~v~~~~~~~l~~l~~~-~~~~~~~~l~~l~~~~~~~~~-----~~~~~v~~~a~~~l~~l~~ 291 (891)
..+..++.|+++++|..|..+|..+... .+..+.+++.+++..+-...+ ..+.+-+...+.|+.....
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 6666777999999999999999999887 788787777777766554433 2456667788888887765
No 106
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00043 Score=75.82 Aligned_cols=230 Identities=15% Similarity=0.155 Sum_probs=159.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCch
Q 002697 479 KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQP 558 (891)
Q Consensus 479 ~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~ 558 (891)
+.+...+..+.|+...+|..+..-+..+++.-...-.-....++...+..+.+.+..+...++..+.++++..
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy------- 799 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY------- 799 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-------
Confidence 3466667778888899999999999999986533333345667777888888888888878888888888753
Q ss_pred hhhhhhhHHHHHHHHcCCCCC-cc-hHhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhH
Q 002697 559 VYLDILMPPLIAKWQQLPNSD-KD-LFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEF 636 (891)
Q Consensus 559 ~~~~~l~~~l~~~l~~~~~~~-~~-~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~ 636 (891)
-+.++|-+.+...+..+.. .+ +..+=|++..++.+.|+-+..|...+++.++..++ |+|..+
T Consensus 800 --~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvr--------------epd~~~ 863 (982)
T KOG4653|consen 800 --PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVR--------------EPDHEF 863 (982)
T ss_pred --chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--------------CchHHH
Confidence 3456666666554433222 12 24566999999999999999998888887776555 236778
Q ss_pred HHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHH-hcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHH----HHHHHH
Q 002697 637 VVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQC-CMDDASDVRQSAFALLGDLARVCPVHLQARLSDF----LDIAAK 711 (891)
Q Consensus 637 ~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i----~~~l~~ 711 (891)
|..++..+|.+.........+++.+ ++..+... ..|...-+|.+|+.++.++...+|....|++... ...+..
T Consensus 864 RaSS~a~lg~Lcq~~a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~ 941 (982)
T KOG4653|consen 864 RASSLANLGQLCQLLAFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLS 941 (982)
T ss_pred HHhHHHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 8888888998888776555556554 44444433 3477889999999999999999998888865433 222222
Q ss_pred hcCCCCCcCchhHhhhHHHHHHHHH
Q 002697 712 QLNTPKLKETVSVANNACWAIGELA 736 (891)
Q Consensus 712 ~l~~~~~~~~~~v~~~a~~alg~l~ 736 (891)
.....+ ...+|-.|+.++..+-
T Consensus 942 ~vr~~~---dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 942 YVRQHD---DDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHhcCc---hhHHHHHHHHHHHHHH
Confidence 222221 3456667766666553
No 107
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.13 E-value=0.01 Score=68.31 Aligned_cols=173 Identities=13% Similarity=0.104 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHH
Q 002697 586 LECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLR 665 (891)
Q Consensus 586 ~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~ 665 (891)
--++..+++.+|..+...++.+.+.++..+..... ..+-....+.++..+...+|..+.+.++ .+
T Consensus 754 el~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~------------~~d~~~~s~~vf~s~~~~m~s~l~~~~~---~l 818 (1549)
T KOG0392|consen 754 ELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLID------------GNDEFLSSFEVFNSLAPLMHSFLHPLGS---LL 818 (1549)
T ss_pred HHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCC------------CCcchhhhHHHHHHHHHhhhhhhhhhhh---hh
Confidence 33567778888876666666676766666664321 1123344667777788888888888443 78
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhHHHHhchH-hhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhh
Q 002697 666 DMLLQCCMDDASDVRQSAFALLGDLARVCPV-HLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEIS 744 (891)
Q Consensus 666 ~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~ 744 (891)
|-+..+..+....+|.+++.+++.+.+.... ...-.++.++|.+ .+.. +..-|..|...++.+.......+.
T Consensus 819 ~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll----~~~~---~~~~r~~a~e~~~~l~~~l~~~l~ 891 (1549)
T KOG0392|consen 819 PRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLL----GDLD---KFVRRQGADELIELLDAVLMVGLV 891 (1549)
T ss_pred hHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cchh---hHhhhhhHHHHHHHHHHhhccccc
Confidence 8888889999999999999999999987654 3444445555432 2221 234456666677777777777788
Q ss_pred hHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhc
Q 002697 745 PIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVC 783 (891)
Q Consensus 745 ~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~ 783 (891)
||.+-++..|++++.+.. ..+|+.+..++++++..-
T Consensus 892 ~~~~Llv~pllr~msd~~---d~vR~aat~~fa~lip~~ 927 (1549)
T KOG0392|consen 892 PYNPLLVVPLLRRMSDQI---DSVREAATKVFAKLIPLL 927 (1549)
T ss_pred ccceeehhhhhcccccch---HHHHHHHHHHHHHHhccc
Confidence 999888988888887764 789999999999998644
No 108
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.10 E-value=5.5e-06 Score=60.10 Aligned_cols=55 Identities=38% Similarity=0.529 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHH
Q 002697 677 SDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGEL 735 (891)
Q Consensus 677 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l 735 (891)
+.+|..|..+||.++..++..+.++++.+++.+...|+++ +..||.+|+++||.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~----~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD----DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS----SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHhcC
Confidence 5689999999999999999999999999999999999987 669999999999975
No 109
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.08 E-value=0.00048 Score=64.47 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHH
Q 002697 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (891)
Q Consensus 106 ~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (891)
++.||..+..+++-++... ++.-...++.+...++++++.+|..|+.+|..+...-.- +.-+.++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----------k~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----------KVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----------eehhhhhHHH
Confidence 4689999999999888765 344556788999999999999999999999988764221 1225666888
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcc-cchhhHHhHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHHHh
Q 002697 186 LQFFQSPHTSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSN-----DPSAEVRKLVCAAFNLLIE 250 (891)
Q Consensus 186 ~~~l~~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~-----~~~~~v~~~~~~~l~~l~~ 250 (891)
+..+.|++++||..|..++..+... .|..+.+.++.++..+-.... ..+.+-|...+..+.....
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 8899999999999999999999876 566676666665555443322 1234455556665555544
No 110
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.046 Score=61.46 Aligned_cols=168 Identities=13% Similarity=0.094 Sum_probs=112.6
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHH
Q 002697 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML 268 (891)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~ 268 (891)
+.+.+...|..|++-+-.-+... +. ++.+++.+++.....+.++++.+.--|..+++..|+.. --.++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-~d----mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~----lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-ED----MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA----LLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-CC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH----HHHHHHHH
Confidence 66677778888887655544332 22 44445556665556788999988888888888877432 23567777
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccC
Q 002697 269 QVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348 (891)
Q Consensus 269 ~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 348 (891)
..++++++.+|..|+.++..+-.. ..++.+++.+.+.+...
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--------el~~~~~~~ik~~l~d~------------------------------- 139 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--------ELLGNIIDPIKKLLTDP------------------------------- 139 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--------HHHHHHHHHHHHHccCC-------------------------------
Confidence 889999999999999998876332 23444444444433321
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhh-hHHHHHHhhccCCCcchHHHHHHHHHHHHHhhc
Q 002697 349 HGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPT-LMPVIQAKLSASGDEAWKDREAAVLALGAIAEG 422 (891)
Q Consensus 349 ~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~ 422 (891)
.-.+|+.|+.++..+-+.-.+.+-.. ....+...+.+.+ +.+..+|+.++..+-..
T Consensus 140 ---------------~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~d---P~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 140 ---------------HAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSD---PIVIANALASLAEIDPE 196 (757)
T ss_pred ---------------cHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCC---chHHHHHHHHHHHhchh
Confidence 11389999999987766554433333 4555666677888 99999998888777654
No 111
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.00 E-value=0.001 Score=68.04 Aligned_cols=178 Identities=17% Similarity=0.160 Sum_probs=126.1
Q ss_pred CHHHHHHHHHHH-HHHHhhChhhhhHhHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHH
Q 002697 234 SAEVRKLVCAAF-NLLIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLL 311 (891)
Q Consensus 234 ~~~v~~~~~~~l-~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll 311 (891)
..+-++.++.-| ..+++..-..-..|+.+|+..+++.+.+ .++..+..|+..+..++++ ....+..+..-.+..++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~--Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN--QPARLFDSTEIAICKVL 377 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh--chHhhhchHHHHHHHHH
Confidence 345566666644 4445544445567888999889998888 6777889999999998887 44445454444444443
Q ss_pred hhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhH
Q 002697 312 SNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLM 391 (891)
Q Consensus 312 ~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~ 391 (891)
+.-..+. .-+.|.++..|+..++.+.|-..+..+.
T Consensus 378 eaa~ds~---------------------------------------------~~v~~~Aeed~~~~las~~P~~~I~~i~ 412 (516)
T KOG2956|consen 378 EAAKDSQ---------------------------------------------DEVMRVAEEDCLTTLASHLPLQCIVNIS 412 (516)
T ss_pred HHHhCCc---------------------------------------------hhHHHHHHHHHHHHHHhhCchhHHHHHh
Confidence 3222111 1246888888999999999887666666
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHh
Q 002697 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (891)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 465 (891)
|.+.. .| ...--+++.++..+.+... +.+...++++.|.+++..++.+..||++|..||-.+...+.
T Consensus 413 ~~Ilt----~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 413 PLILT----AD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred hHHhc----Cc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 66554 34 4434455557777877665 56778999999999999999999999999999988877665
No 112
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.99 E-value=5.6e-05 Score=61.60 Aligned_cols=85 Identities=29% Similarity=0.454 Sum_probs=66.0
Q ss_pred HHHHHhh-ccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCC
Q 002697 392 PVIQAKL-SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (891)
Q Consensus 392 ~~l~~~l-~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 470 (891)
|.+.+.+ ++++ |.+|..++.++|.+.. +..++.+...++|+++.||..|++++|++..
T Consensus 2 ~~L~~~l~~~~~---~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPD---PQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------- 60 (88)
T ss_dssp HHHHHHHHTSSS---HHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------
T ss_pred HHHHHHHhcCCC---HHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence 5566666 6677 9999999999994421 2568888888999999999999999999853
Q ss_pred CcchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q 002697 471 QNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFA 504 (891)
Q Consensus 471 ~~~~~~~~~~l~~l~~~l~d~-~~~v~~~a~~al~ 504 (891)
+..++.+.+.+.++ +..||..|+.+|+
T Consensus 61 -------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 -------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 24566777777664 5678999999875
No 113
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.99 E-value=0.0023 Score=72.70 Aligned_cols=208 Identities=18% Similarity=0.203 Sum_probs=156.0
Q ss_pred chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHH
Q 002697 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (891)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 463 (891)
++++.+-+.+...+.+.+ |+.|..|+..+..+.+... +....+...+...+-..+.|.+..|...|+.+|..++..
T Consensus 249 di~~ki~~~l~t~~~s~~---WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKK---WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hhhhhcChHHHHhhhccc---hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 566777778888888888 9999999998888777655 333455555666667778899999999999999999988
Q ss_pred HhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHH
Q 002697 464 IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543 (891)
Q Consensus 464 ~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~a 543 (891)
+... ...|...+++.++..+.+....+|..+..++..+++. -.+..+++.+...+.+.....+......
T Consensus 326 lr~~-----~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~ 394 (815)
T KOG1820|consen 326 LRPL-----FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLL 394 (815)
T ss_pred cchh-----hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 7643 6778889999999999998899999988888888773 2355666777778888877777777777
Q ss_pred HHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHhcc-ccccchHHHHH
Q 002697 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQ 609 (891)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~-~~~~~~~~i~~ 609 (891)
+....+..++......-...+.|.+..... +.+..+ .++.++++.+.+.+|+ .+..++..+.+
T Consensus 395 l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~---D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 395 LDRKLRKLGPKTVEKETVKTLVPHLIKHIN---DTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred HHHHHhhcCCcCcchhhHHHHhHHHhhhcc---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 777777776432212456667776655433 345556 7899999999999998 45555555543
No 114
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.95 E-value=0.0011 Score=74.61 Aligned_cols=353 Identities=17% Similarity=0.155 Sum_probs=181.6
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHH
Q 002697 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 485 (891)
--.| .++..|..+++...-..+-.-..+++.+++.|...+..+...+..+|.+++..-... ..-.-..+++.+.
T Consensus 264 qLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK-----~~m~~~giV~kL~ 337 (708)
T PF05804_consen 264 QLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENK-----DEMAESGIVEKLL 337 (708)
T ss_pred HHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----HHHHHcCCHHHHH
Confidence 3444 667788889887764433333558888999999889999998999998887543211 1111245888888
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHcccchhHHHHHHHHHHHHHHHh--cccCCchhhh
Q 002697 486 KRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV--GFELNQPVYL 561 (891)
Q Consensus 486 ~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~--~~~~~~~~~~ 561 (891)
+.+..++..++..+.++|.++.-.. .+.+.+ ..++|.|...+.+.+. +..++..+..+...- ...+ .|
T Consensus 338 kLl~s~~~~l~~~aLrlL~NLSfd~--~~R~~mV~~GlIPkLv~LL~d~~~--~~val~iLy~LS~dd~~r~~f---~~- 409 (708)
T PF05804_consen 338 KLLPSENEDLVNVALRLLFNLSFDP--ELRSQMVSLGLIPKLVELLKDPNF--REVALKILYNLSMDDEARSMF---AY- 409 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHhCcCH--HHHHHHHHCCCcHHHHHHhCCCch--HHHHHHHHHHhccCHhhHHHH---hh-
Confidence 8888888889999999998886432 222222 2356677777765432 223333333333211 1111 11
Q ss_pred hhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHH------H--hccccccchHHHH----HHHHHHHHHHHHH----hhcC
Q 002697 562 DILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQ------A--LGAGFTQFAQPVF----QRCINIIQTQQLA----KVDS 625 (891)
Q Consensus 562 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~------~--~~~~~~~~~~~i~----~~l~~~l~~~~~~----~~~~ 625 (891)
...+|.+++.+...+.+.... .++..+..++. . -|..+...+...+ +.+++++.+-..- +..-
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~-eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f 488 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQL-ELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELF 488 (708)
T ss_pred cchHHHHHHHHHhCCCccccH-HHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHH
Confidence 134566656554432121111 11111111110 0 0111111100000 1111222211000 0000
Q ss_pred --------cccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCC--ChHHHHHHHHHHhHHHHhch
Q 002697 626 --------VAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDD--ASDVRQSAFALLGDLARVCP 695 (891)
Q Consensus 626 --------~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~ 695 (891)
.-.....+.++...++.+++.+.-. +.+...++....++|++...+... ..++.-.++-++|.++..
T Consensus 489 ~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-- 565 (708)
T PF05804_consen 489 VDFIGDLAKIVSSGDSEEFVVECLGILANLTIP-DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-- 565 (708)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC-CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--
Confidence 0000011334443333333333221 334555554335888888887543 346777788888987743
Q ss_pred HhhHHhHH--HHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhh-hhhHHHHHHHHHHHHhcCChhhhhhHHHhH
Q 002697 696 VHLQARLS--DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQE-ISPIVMTVVLCLVPILKHSEELNKSLIENS 772 (891)
Q Consensus 696 ~~~~~~~~--~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~~~~~~~~ 772 (891)
....+.+. .+++.++..+..... +.+.--..++++.++..+-... ..-.-.++...++.++.+.+ ..++..+
T Consensus 566 ~~~A~lL~~sgli~~Li~LL~~kqe--DdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N---~~ir~~~ 640 (708)
T PF05804_consen 566 PECAPLLAKSGLIPTLIELLNAKQE--DDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKN---AEIRKVC 640 (708)
T ss_pred HHHHHHHHhCChHHHHHHHHHhhCc--hHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCC---HHHHHHH
Confidence 34444443 677777777766544 2366677788999988764321 11111346667777777664 5666655
Q ss_pred HHHHhhhhh
Q 002697 773 AITLGRLAW 781 (891)
Q Consensus 773 ~~~l~~l~~ 781 (891)
-.++.-+..
T Consensus 641 d~~Ldii~e 649 (708)
T PF05804_consen 641 DNALDIIAE 649 (708)
T ss_pred HHHHHHHHH
Confidence 555555543
No 115
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.95 E-value=2.8e-05 Score=68.03 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=84.9
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 002697 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE-KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (891)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (891)
+++.++..+.++++.+|..++++++.++...+.. ...... .+++.+.+.+.++++.++..|+++|.+++...+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDN-----IQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHH-----HHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 5777888888999999999999999998753321 233333 7888999999999999999999999999876533
Q ss_pred cchHhH-HHHHHHHHHHHcccchhHHHHHHHHHHHHH
Q 002697 513 ELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (891)
Q Consensus 513 ~~~~~l-~~il~~l~~~l~~~~~~~~~~~~~al~~l~ 548 (891)
....+. ..+++.+.+.++..+...++.+..++..++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222223 347888889998888888888888887765
No 116
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.93 E-value=0.17 Score=64.71 Aligned_cols=434 Identities=16% Similarity=0.168 Sum_probs=226.8
Q ss_pred HHHhhccCCCcchHHHHHHHHHHHHHhhcchh--hhh----hhHHHHHHHHhh-hcCCCChHHHHHHHHHHH-hhHHHHh
Q 002697 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIK--GLY----PHLSEIVAFLIP-LLDDKFPLIRSISCWTLS-RFSKFIV 465 (891)
Q Consensus 394 l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~--~~~----~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~-~~~~~~~ 465 (891)
+..++...+ ...|..+......+...... ... .++..++..+.. .+.|+++.+|.+....+. ++-...
T Consensus 486 ~~~~~~~~~---~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~l- 561 (2341)
T KOG0891|consen 486 VDSYLEADD---SEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQL- 561 (2341)
T ss_pred HHHHHhccc---HHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhh-
Confidence 444555555 77888887766655543321 111 123333443333 356888888888777666 111111
Q ss_pred hhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHH-HHHHHH
Q 002697 466 QDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLR-IVYDAI 544 (891)
Q Consensus 466 ~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~-~~~~al 544 (891)
.-...+..++..+.+..-..+..+...+++++...+..+.|++.........-+......... ....-.
T Consensus 562 ----------aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~ 631 (2341)
T KOG0891|consen 562 ----------AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLL 631 (2341)
T ss_pred ----------cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHh
Confidence 112445557778888888889999998988877666556666655444333333222111111 111111
Q ss_pred HHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhh
Q 002697 545 GTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKV 623 (891)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 623 (891)
..++.....-.. +|...++-.+...+.+.. +.+ ..+.++++.++...|.....++...++.+.+.+....
T Consensus 632 ~~~i~~~~~~i~--~~v~~~l~~~~~~~~~~~---s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s---- 702 (2341)
T KOG0891|consen 632 CELIISSPVLIS--PYVGPILLVLLPKLQDPS---SGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQS---- 702 (2341)
T ss_pred hHHHHHHHHHHH--hhcCchHHHHHHHHhccc---hhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhh----
Confidence 111111111111 566666666666666542 233 6789999999999998888888878887777766432
Q ss_pred cCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcC-CChHHHHHHHHHHhHHHHhchHhhHHhH
Q 002697 624 DSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD-DASDVRQSAFALLGDLARVCPVHLQARL 702 (891)
Q Consensus 624 ~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 702 (891)
...-+..++.+++.+.+.-|-...|+...|.++..+...+.. ....+|..++..+|... ...||.
T Consensus 703 ---------~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g-----~~d~~~ 768 (2341)
T KOG0891|consen 703 ---------SLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG-----ALDPYK 768 (2341)
T ss_pred ---------hhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc-----ccchhH
Confidence 112234566777777777776677777666777777665544 34668888988888332 233444
Q ss_pred HHHHHHH--HHhcCCCCCcCchhHhhhHHHHHHHHHHhch-hhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhh
Q 002697 703 SDFLDIA--AKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRL 779 (891)
Q Consensus 703 ~~i~~~l--~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l 779 (891)
....... .+...... .... ....+......+ ..+.|. ..+..+..++.+... ..+...++ .+.-.+
T Consensus 769 ~~~~~~~~~~~~~~~~~---k~~~----~~~~~~~~~~~~~~e~~p~--v~I~~l~~~l~d~~~-~~~l~~~~-~a~~~i 837 (2341)
T KOG0891|consen 769 HKVTEGTSASKISSEQI---KSDI----DISLLESGVNPSNDEYYPA--VTIHALMGILKDPSL-SIHHTAVA-QAIMHI 837 (2341)
T ss_pred HHHHhhhhhHhhhhccc---cccc----hHHHHHhhhhhhhhhhhhH--HHHHHHhhhhhhhhh-HHHHHHhh-hchhHH
Confidence 3333222 22211111 0000 111111111111 122222 122244455554421 22333332 222222
Q ss_pred hhhcCCccCcchhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChhhhHhhHHHHhhHhhcccccCchhHHHHHHHHH
Q 002697 780 AWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVL 859 (891)
Q Consensus 780 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 859 (891)
..........+.+++++.++..... -...+....+.-++..+...+..+.+..+.+...+..+..+.. .+...+..++
T Consensus 838 ~~~~~~~~~l~l~qv~~~~~~~~r~-~~~~~~~f~~~q~~~~~~~~~~h~~~~~~~i~~~i~~~~~~~~-~l~~~~~~l~ 915 (2341)
T KOG0891|consen 838 FQSLGLKCVLFLDQVIPTLIDVMRS-CPPNLREFYFQQLTSLVAIVRQHIRPYMESIFTLIKDFWPPDT-SLQITIISLI 915 (2341)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHh-cCcchhHHHHHhhhhhhhccchhHhhhhhhHHHHHHhhhhhHH-HHHHHHHHHH
Confidence 2223333445788888887776663 2334455566667777666777777888888888777553221 1222333333
Q ss_pred HHHHhhcChhhHHHHHhcC
Q 002697 860 HGYKQMLRNGAWDQCMSAL 878 (891)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~ 878 (891)
..+...++. .|..+.+++
T Consensus 916 ~~i~~~l~~-~f~~~l~~~ 933 (2341)
T KOG0891|consen 916 EDIAVALGG-EFKKYLPEL 933 (2341)
T ss_pred HHHHHHHHh-HHHHhhhhh
Confidence 333333332 455444433
No 117
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.93 E-value=0.0055 Score=62.69 Aligned_cols=233 Identities=18% Similarity=0.157 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhccc
Q 002697 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (891)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~ 554 (891)
++.-+...+..+.+.....|+.+...+..++..- .+.+..+...++..+.+.+++.+.+....++.+++.++-.+|..
T Consensus 41 ~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 41 LEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence 3444556666677777889999999988887652 55566778889999999998877766677889999999887732
Q ss_pred CCchhhhhhhhHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCc
Q 002697 555 LNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYD 633 (891)
Q Consensus 555 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d 633 (891)
......++.+.|.|...+.... ..... ..++.|++.++...+..... +..++
T Consensus 121 ~~~~ei~~~~~~~L~~~l~d~s-~~~~~R~~~~~aLai~~fv~~~d~~~-----~~~~~--------------------- 173 (309)
T PF05004_consen 121 EDSEEIFEELKPVLKRILTDSS-ASPKARAACLEALAICTFVGGSDEEE-----TEELM--------------------- 173 (309)
T ss_pred ccHHHHHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHhhcCChhH-----HHHHH---------------------
Confidence 2223788999999988887643 22333 56677777766554433111 11011
Q ss_pred hhHHHHHhhhHHHHHHHH--h-hhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchH-hhHHhHHHHHHHH
Q 002697 634 KEFVVCCLDLLSGLAEGL--G-SGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV-HLQARLSDFLDIA 709 (891)
Q Consensus 634 ~~~~~~~~~~l~~l~~~~--~-~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l 709 (891)
+++..+.... . .+-.|.+. ..+++.+..+|+..++-++..++. .+...+...+|.+
T Consensus 174 --------~~le~if~~~~~~~~~~~~~~~------------~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l 233 (309)
T PF05004_consen 174 --------ESLESIFLLSILKSDGNAPVVA------------AEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPAL 233 (309)
T ss_pred --------HHHHHHHHHHhcCcCCCccccc------------CCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1111110000 0 00000110 123456777888888888877764 4666778889999
Q ss_pred HHhcCCCCCcCchhHhhhHHHHHHHHHHhchh---hh-hhHHHHHHHHHHHHhcC
Q 002697 710 AKQLNTPKLKETVSVANNACWAIGELAVKARQ---EI-SPIVMTVVLCLVPILKH 760 (891)
Q Consensus 710 ~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~---~~-~~~~~~il~~l~~~l~~ 760 (891)
...|+.+ +.+||.+|..+++-+...... ++ .+..+.+++.+-.+-.+
T Consensus 234 ~~lL~s~----d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~d 284 (309)
T PF05004_consen 234 SELLDSD----DVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATD 284 (309)
T ss_pred HHHhcCC----CHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHh
Confidence 9999988 789999999999988655442 22 23445555555444443
No 118
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.0094 Score=65.65 Aligned_cols=386 Identities=12% Similarity=0.123 Sum_probs=198.1
Q ss_pred HHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCchhhHHhhhh-hhHHHHHhhccCChhhhhhhhhcccCCCCCCCC
Q 002697 260 LRNLFEYMLQVNKDT-DDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (891)
Q Consensus 260 l~~l~~~~~~~~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~-~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~ 337 (891)
++.+++.++..++++ ..++...|+.++..+++. .+.-..-.+. ..+|.++..+...+
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev--lP~S~a~vV~~~aIPvl~~kL~~Ie------------------- 267 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEV--LPRSSAIVVDEHAIPVLLEKLLTIE------------------- 267 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchhheeecccchHHHHHhhhhhh-------------------
Confidence 457777777777653 578999999999999987 3222221222 35666665544211
Q ss_pred CCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhh-----hhHHHHHHhhccCCCcchHHHHHH
Q 002697 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP-----TLMPVIQAKLSASGDEAWKDREAA 412 (891)
Q Consensus 338 ~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~-----~l~~~l~~~l~~~~~~~~~~r~aa 412 (891)
| ..+...+.++|..|++.-|..++. .++.++..+- -..+..|
T Consensus 268 y--------------------------iDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFS-------i~aQR~A 314 (1051)
T KOG0168|consen 268 Y--------------------------IDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFS-------IHAQRVA 314 (1051)
T ss_pred h--------------------------hHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHH-------HHHHHHH
Confidence 0 114556778888888877765442 2333333221 2234455
Q ss_pred HHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchh-hHHHHHHHHHHHhcCC
Q 002697 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE-QFEKVLMGLLKRILDT 491 (891)
Q Consensus 413 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~l~d~ 491 (891)
+.....++.....+-..++-+.+|.+.+.|......+-..+|.|+.++++.+.+. +....+ .-..++....+.+.-+
T Consensus 315 laiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~--~~kLdql~s~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 315 LAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG--PDKLDQLCSHDLITNIQQLLSVT 392 (1051)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC--hHHHHHHhchhHHHHHHHHHhcC
Confidence 4444444444433334566778999999999888888999999999999887642 111111 1234455555555432
Q ss_pred C----HHHHHHHHHHHHHHHHHhcccchH-hHHHHHHHHHHHHcccchh-----------HHHHHHHHHHHHHHHhcccC
Q 002697 492 N----KRVQEAACSAFATLEEEAAEELAP-RLEIILQHLMMAFGKYQRR-----------NLRIVYDAIGTLADAVGFEL 555 (891)
Q Consensus 492 ~----~~v~~~a~~al~~l~~~~~~~~~~-~l~~il~~l~~~l~~~~~~-----------~~~~~~~al~~l~~~~~~~~ 555 (891)
. ..+.......|...+..++..+.. +...|...+..+|..+... .-...++..+.++..+...-
T Consensus 393 ~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p 472 (1051)
T KOG0168|consen 393 PTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLP 472 (1051)
T ss_pred cccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCc
Confidence 1 112222233333333222222222 3345666666666544320 01123444444444332110
Q ss_pred Cc------hhhhh-------h-----------------hhHHHHHHHHcCCCCCcchHhHHH--HHHHHHHHhccccccc
Q 002697 556 NQ------PVYLD-------I-----------------LMPPLIAKWQQLPNSDKDLFPLLE--CFTSIAQALGAGFTQF 603 (891)
Q Consensus 556 ~~------~~~~~-------~-----------------l~~~l~~~l~~~~~~~~~~~~~~~--~l~~i~~~~~~~~~~~ 603 (891)
.. -.|.. . +.-.++...+......+.....+. .=..+...-++.+..|
T Consensus 473 ~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F 552 (1051)
T KOG0168|consen 473 VEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSF 552 (1051)
T ss_pred ccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHH
Confidence 00 00000 0 000111111110000000000000 0000111111234556
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhh-HHhhhccchHHHHHHHHhcCCChHHHHH
Q 002697 604 AQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSG-IESLVAQSNLRDMLLQCCMDDASDVRQS 682 (891)
Q Consensus 604 ~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 682 (891)
...+++.++++..+.. +.++|-.++.++..++...... +..++.+..+-..+...+..++..|.--
T Consensus 553 ~~~llpVLveVYsSsA-------------~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVg 619 (1051)
T KOG0168|consen 553 GKDLLPVLVEVYSSSA-------------NPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVG 619 (1051)
T ss_pred HHHHHHHHHHHHhccC-------------CchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEee
Confidence 6667777777766432 6677878888888777654433 3334433334444445556677777778
Q ss_pred HHHHHhHHHHhchHhhHHhHH--HHHHHHHHhcC
Q 002697 683 AFALLGDLARVCPVHLQARLS--DFLDIAAKQLN 714 (891)
Q Consensus 683 a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~ 714 (891)
|+.+..-+++.+++.|.+++. .++..+.....
T Consensus 620 ALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 620 ALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred hHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 899889999999999988774 45555444433
No 119
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.91 E-value=0.0085 Score=61.31 Aligned_cols=210 Identities=20% Similarity=0.164 Sum_probs=139.9
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccC
Q 002697 269 QVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348 (891)
Q Consensus 269 ~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 348 (891)
..+.+.....|..+++.+..+.........+......++..+...+.....+
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~---------------------------- 101 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSE---------------------------- 101 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHH----------------------------
Confidence 3344556778999999888877665556666667777888877766643311
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHHHcC--c---chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcc
Q 002697 349 HGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG--D---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (891)
Q Consensus 349 ~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~--~---~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~ 423 (891)
-+..|..++..++-.+| . .++..+.|.+...+.+.. .....|.+++.+||.++--+
T Consensus 102 ------------------E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s-~~~~~R~~~~~aLai~~fv~ 162 (309)
T PF05004_consen 102 ------------------EQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSS-ASPKARAACLEALAICTFVG 162 (309)
T ss_pred ------------------HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHhh
Confidence 14568888888888876 2 677888898888887652 22678888888888776533
Q ss_pred hhh---hh---hhHHHHHHHHhhhcC--------CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhc
Q 002697 424 IKG---LY---PHLSEIVAFLIPLLD--------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (891)
Q Consensus 424 ~~~---~~---~~l~~i~~~l~~~l~--------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 489 (891)
... +. ..+..++........ .+++.+..+|+.+.+-+...++.. .....+...++.+...|.
T Consensus 163 ~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~----~~~~~~~~~~~~l~~lL~ 238 (309)
T PF05004_consen 163 GSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDS----KLEDLLEEALPALSELLD 238 (309)
T ss_pred cCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHhc
Confidence 222 22 233333333222211 124678899988888888766542 244667888999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcc---c-chHhHHHHHHHHHHHH
Q 002697 490 DTNKRVQEAACSAFATLEEEAAE---E-LAPRLEIILQHLMMAF 529 (891)
Q Consensus 490 d~~~~v~~~a~~al~~l~~~~~~---~-~~~~l~~il~~l~~~l 529 (891)
..+..||.+|..+|.-+.+.... . ..+..+.++..+..+-
T Consensus 239 s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La 282 (309)
T PF05004_consen 239 SDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELA 282 (309)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHH
Confidence 88999999999999999887642 2 2334455555444443
No 120
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.89 E-value=0.0012 Score=67.62 Aligned_cols=198 Identities=22% Similarity=0.331 Sum_probs=133.7
Q ss_pred HHHHHHHHHhccC-ChhHHhHHHHHHHHH-HhhchhccccCCCCCCCcchhhhHHHHHHhhcC-CCHHHHHHHHHHHHHH
Q 002697 131 ELLQALVTCLDSN-DINHMEGAMDALSKI-CEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQF 207 (891)
Q Consensus 131 ~ll~~L~~~l~~~-~~~~r~~al~~L~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~ 207 (891)
.++..+...+++. ....+++|+.-|..+ ++.-... ++++..+++-.+++.|.+ .+...+..|++.|..+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsv--------Weq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~m 357 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSV--------WEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREM 357 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhH--------HHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Confidence 3555555555544 557788888855444 4432222 234568888889999998 6889999999999999
Q ss_pred hcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 002697 208 IMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA-AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (891)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~-~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l 286 (891)
+..-+..+...-...+..++....|+..++-..|-+ |+..++...|.. .+..+.+.++. .|+.....++..+
T Consensus 358 l~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---~I~~i~~~Ilt----~D~~~~~~~iKm~ 430 (516)
T KOG2956|consen 358 LTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---CIVNISPLILT----ADEPRAVAVIKML 430 (516)
T ss_pred HHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---HHHHHhhHHhc----CcchHHHHHHHHH
Confidence 998888888777777777888787776666555554 455555555542 22334444333 4555666778888
Q ss_pred HHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccccc
Q 002697 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (891)
Q Consensus 287 ~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~ 366 (891)
..+++. ...+.+.+.++++.|.+++.... .+-+
T Consensus 431 Tkl~e~-l~~EeL~~ll~diaP~~iqay~S----------------------------------------------~SS~ 463 (516)
T KOG2956|consen 431 TKLFER-LSAEELLNLLPDIAPCVIQAYDS----------------------------------------------TSST 463 (516)
T ss_pred HHHHhh-cCHHHHHHhhhhhhhHHHHHhcC----------------------------------------------chHH
Confidence 887775 34556677788888887653321 1235
Q ss_pred HHHHHHHHHHHHHHHcC-cchhhhh
Q 002697 367 LRKCSAAALDVLSNVFG-DEILPTL 390 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~-~~~~~~l 390 (891)
+|++|+.||-.+...+| +.+.|++
T Consensus 464 VRKtaVfCLVamv~~vG~~~mePhL 488 (516)
T KOG2956|consen 464 VRKTAVFCLVAMVNRVGMEEMEPHL 488 (516)
T ss_pred hhhhHHHhHHHHHHHHhHHhhhhHh
Confidence 89999999999999999 4554443
No 121
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.88 E-value=0.00074 Score=76.61 Aligned_cols=203 Identities=13% Similarity=0.155 Sum_probs=136.1
Q ss_pred HHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccc
Q 002697 520 IILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAG 599 (891)
Q Consensus 520 ~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~ 599 (891)
.+-+.+..-+.+.++..+..+++.+...+...+.... ..|...+. .++....... +-........|+..++.+++..
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~-~~~ki~~kDa-N~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLG-ILLKIRLKDA-NINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHH-HHHHHhccCc-chhHHHHHHHHHHHHHHhcchh
Confidence 3344444444555666666666666666655541121 13433333 3333322211 1112267889999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHH
Q 002697 600 FTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDV 679 (891)
Q Consensus 600 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 679 (891)
|.+|...+++.++..+... -..++..++.++..+..+.+- ..+.+.+...+++.++.+
T Consensus 330 ~~~~~~~v~p~lld~lkek--------------k~~l~d~l~~~~d~~~ns~~l--------~~~~~~I~e~lk~knp~~ 387 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEK--------------KSELRDALLKALDAILNSTPL--------SKMSEAILEALKGKNPQI 387 (815)
T ss_pred hHHHHHhhcchHHHHhhhc--------------cHHHHHHHHHHHHHHHhcccH--------HHHHHHHHHHhcCCChhh
Confidence 9999999999988776632 334555555555555543221 237888888999999999
Q ss_pred HHHHHHHHhHHHHhchH--hhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhh-hhhHHHHHH
Q 002697 680 RQSAFALLGDLARVCPV--HLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQE-ISPIVMTVV 751 (891)
Q Consensus 680 r~~a~~~l~~l~~~~~~--~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~-~~~~~~~il 751 (891)
+.....+++...+..+. ....-+..++|.+++...+. +.+||.+|..+++.+...+|++ +..++..+-
T Consensus 388 k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~----~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 388 KGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDT----DKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCC----cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 99999999999888773 34466778999999999888 7899999999999999988865 444444433
No 122
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.078 Score=59.19 Aligned_cols=187 Identities=17% Similarity=0.218 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCC-----hhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHH
Q 002697 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND-----INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (891)
Q Consensus 109 vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~-----~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (891)
-|+..+..+-..-...+.+-..-+...+-+.+.+++ +...++.+..+..+.+.++... ...+|
T Consensus 440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~------------~~~i~ 507 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE------------STWIP 507 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch------------hHHHH
Confidence 456555554444433343344556666777776654 4566778888888888766532 44577
Q ss_pred HHHHhhcC-----CCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhH
Q 002697 184 RLLQFFQS-----PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (891)
Q Consensus 184 ~l~~~l~~-----~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~ 258 (891)
.+++...+ .+++....+...++.+..+..++-. +++..++.+++.+.. ++.-.++...+..+++.+++.+.|
T Consensus 508 rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~-~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L~p 584 (982)
T KOG2022|consen 508 RLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPM-YLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESLDP 584 (982)
T ss_pred HHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCc-ccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhCch
Confidence 77776643 4778888899999888877543321 234557788887753 334456666799999999999999
Q ss_pred hHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHH
Q 002697 259 HLRNLFEYMLQVNKDT--DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLL 311 (891)
Q Consensus 259 ~l~~l~~~~~~~~~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll 311 (891)
|.+.++..+-..+... .+..|...+..++-+...- .++.+..|+..++..++
T Consensus 585 y~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~-~pEe~~kyl~~lin~il 638 (982)
T KOG2022|consen 585 YADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL-KPEEIPKYLMKLINPIL 638 (982)
T ss_pred HHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc-cHHhHHHHHHHHHHHHH
Confidence 9999988876654322 2334555555555444331 13334445555544443
No 123
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.032 Score=60.80 Aligned_cols=140 Identities=15% Similarity=0.182 Sum_probs=88.0
Q ss_pred HHHHHHHHHc-Ccchhhhh-HHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchh-hhhhhHHHHHHHHhhhcCCCChHH
Q 002697 373 AALDVLSNVF-GDEILPTL-MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDDKFPLI 449 (891)
Q Consensus 373 ~~l~~l~~~~-~~~~~~~l-~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~v 449 (891)
.+++.+...+ .++-+|.+ +..+...+-+.+ -..+.--+.-+..+-....+ .+.+.+--+...+-+-|++|+..+
T Consensus 39 eamK~ii~~mlnGe~~p~Llm~IiRfvlps~~---~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyi 115 (948)
T KOG1058|consen 39 EAMKKIIALMLNGEDLPSLLMTIIRFVLPSRN---HELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYI 115 (948)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHhheeeccCc---hHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhh
Confidence 3444433333 33333443 344444555555 55554433333322222111 122333335567778899999999
Q ss_pred HHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHH
Q 002697 450 RSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMM 527 (891)
Q Consensus 450 r~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~ 527 (891)
|...++.+.++- ..+.+++++|.+..+|..++.-||..|..|+..+... .+.+.|-.+.++...+.
T Consensus 116 RG~TLRFLckLk-----------E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~ 181 (948)
T KOG1058|consen 116 RGSTLRFLCKLK-----------EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLL 181 (948)
T ss_pred cchhhhhhhhcC-----------cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHH
Confidence 999988776653 3567889999999999999999999999999998876 34555666666665443
No 124
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.023 Score=62.75 Aligned_cols=180 Identities=15% Similarity=0.182 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHHhh-cchhhhh-hhHHHHHHHHhhhcCCC-ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHH
Q 002697 406 WKDREAAVLALGAIAE-GCIKGLY-PHLSEIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~~-~~~~~~~-~~l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 482 (891)
+...-.|+.-++.+.. +..+.+. --++.++|.++..++++ ++.+-..||+|+..+++.++.-+ ....-...+|
T Consensus 182 es~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~----a~vV~~~aIP 257 (1051)
T KOG0168|consen 182 ESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS----AIVVDEHAIP 257 (1051)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh----heeecccchH
Confidence 4444444444443332 2223332 23567899999999885 56889999999999999987531 1111234677
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhh
Q 002697 483 GLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYL 561 (891)
Q Consensus 483 ~l~~~l~d-~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~ 561 (891)
.++..|.. ....|.+.+..||..+...-+..+..- .. +...+..|+-..-..++.++.....+++.+..+.. .|+
T Consensus 258 vl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~A-G~-l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f--~~v 333 (1051)
T KOG0168|consen 258 VLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQA-GA-LSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF--HFV 333 (1051)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhc-cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--hHH
Confidence 77776664 346799999999999887643332110 11 11123344444456778888888899998887766 789
Q ss_pred hhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHH
Q 002697 562 DILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQA 595 (891)
Q Consensus 562 ~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~ 595 (891)
-..+|.|...++... ++.+..+.-|+..++..
T Consensus 334 ~ealPlL~~lLs~~D--~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 334 MEALPLLTPLLSYQD--KKPIESVCICLTRIADG 365 (1051)
T ss_pred HHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHh
Confidence 999999998888742 23346777788877754
No 125
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.018 Score=56.15 Aligned_cols=257 Identities=16% Similarity=0.194 Sum_probs=137.8
Q ss_pred HHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc-ccchHh----HHHHHHHH
Q 002697 451 SISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EELAPR----LEIILQHL 525 (891)
Q Consensus 451 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-~~~~~~----l~~il~~l 525 (891)
.-+..|+.++.+... ......++++.+-.++..++..|+.-+|+.++.+++.|. ..+... -..+++.+
T Consensus 61 tlcVscLERLfkake-------gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkli 133 (524)
T KOG4413|consen 61 TLCVSCLERLFKAKE-------GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLI 133 (524)
T ss_pred hhHHHHHHHHHhhcc-------chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHH
Confidence 336667777766443 233445677777788887788999999999999999984 333332 24688888
Q ss_pred HHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHH-----HHHH-HHcCCCCCcchHhHHHHHHHHHHHhccc
Q 002697 526 MMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPP-----LIAK-WQQLPNSDKDLFPLLECFTSIAQALGAG 599 (891)
Q Consensus 526 ~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~-----l~~~-l~~~~~~~~~~~~~~~~l~~i~~~~~~~ 599 (891)
+.++...+..+-..+.+++..++..- .-++.++|. +... +.. ..++-....+++.+-.+....+ .
T Consensus 134 ldcIggeddeVAkAAiesikrialfp-------aaleaiFeSellDdlhlrnlaa-kcndiaRvRVleLIieifSiSp-e 204 (524)
T KOG4413|consen 134 LDCIGGEDDEVAKAAIESIKRIALFP-------AALEAIFESELLDDLHLRNLAA-KCNDIARVRVLELIIEIFSISP-E 204 (524)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhcH-------HHHHHhcccccCChHHHhHHHh-hhhhHHHHHHHHHHHHHHhcCH-H
Confidence 99998888888888999998887531 122222221 0000 000 0011111223333222222111 1
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhc--CCCh
Q 002697 600 FTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM--DDAS 677 (891)
Q Consensus 600 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~ 677 (891)
...|..+ ..++..|.... + +.+ |.-++..+++++..+++. .+...|++|..++.++-.... +.++
T Consensus 205 saneckk--SGLldlLeaEl-------k-Gte-DtLVianciElvteLaet--eHgreflaQeglIdlicnIIsGadsdP 271 (524)
T KOG4413|consen 205 SANECKK--SGLLDLLEAEL-------K-GTE-DTLVIANCIELVTELAET--EHGREFLAQEGLIDLICNIISGADSDP 271 (524)
T ss_pred HHhHhhh--hhHHHHHHHHh-------c-CCc-ceeehhhHHHHHHHHHHH--hhhhhhcchhhHHHHHHHHhhCCCCCc
Confidence 1111100 01111111111 0 111 445566777777777765 445677777667777766553 2333
Q ss_pred HHHHHHHHHHhHHH------HhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhch
Q 002697 678 DVRQSAFALLGDLA------RVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR 740 (891)
Q Consensus 678 ~vr~~a~~~l~~l~------~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~ 740 (891)
--+-.++-..|.+. ...++.+-..++..+...+..+... +......|+.++|.+.....
T Consensus 272 fekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn----DpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 272 FEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN----DPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred HHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC----CchHHHHHHHHHHhccCCcc
Confidence 33322333333222 2223333344444555555555554 45778899999999976653
No 126
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.01 Score=57.75 Aligned_cols=168 Identities=17% Similarity=0.144 Sum_probs=112.6
Q ss_pred HHHHHHHHHhhc-ccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcC
Q 002697 113 VGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (891)
Q Consensus 113 ~a~~l~~i~~~~-~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 191 (891)
+..++-.+++.. +...-|++++.|...+..++..++..++..++.+++++...-.+++ .--.-..+++.++.++-.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVsei---llvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEI---LLVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHH---HHHhhhhHHHHHHHHHcC
Confidence 455666677664 5566799999999999999989999999999999998864211110 000115788999999999
Q ss_pred CCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHH-----------hhCCCCHHHHHHHHHHHHHHHhhChhhhhHhH
Q 002697 192 PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL-----------LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (891)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~-----------~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l 260 (891)
.+.+|..+|++.+..+..+ |.. +..+|. +....+.-+|..+++.+..+....|+.....-
T Consensus 140 eddeVAkAAiesikrialf-paa--------leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneck 210 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALF-PAA--------LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECK 210 (524)
T ss_pred CcHHHHHHHHHHHHHHHhc-HHH--------HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhh
Confidence 9999999999999998754 221 222222 11112334566677777777766665543221
Q ss_pred -HHHHHHHHhhcCC-CCHHHHHHHHHHHHHhhcc
Q 002697 261 -RNLFEYMLQVNKD-TDDDVALEACEFWHSYFEA 292 (891)
Q Consensus 261 -~~l~~~~~~~~~~-~~~~v~~~a~~~l~~l~~~ 292 (891)
..++..+..-+.. .|.=|+..+++....+++.
T Consensus 211 kSGLldlLeaElkGteDtLVianciElvteLaet 244 (524)
T KOG4413|consen 211 KSGLLDLLEAELKGTEDTLVIANCIELVTELAET 244 (524)
T ss_pred hhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH
Confidence 2455555555665 4555778889999998876
No 127
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.0036 Score=68.95 Aligned_cols=200 Identities=13% Similarity=0.142 Sum_probs=141.5
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhccc
Q 002697 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (891)
Q Consensus 132 ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (891)
-++.-...+.++.+.+|-+|++.++.+++.-... .- -....++..++..+.+.++-|-..|++.+..+++..
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~--~~------~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy 799 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKA--TL------IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY 799 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchh--hh------hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc
Confidence 3555556667777889999999999999843211 00 012567888899999999999999999888888887
Q ss_pred chhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 002697 212 PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (891)
Q Consensus 212 ~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~ 291 (891)
|+.+.+.+. ..-.+.-.....+.|..+-+++..++...++.+..|...++..++....++|...|..++..++.++.
T Consensus 800 ~e~il~dL~---e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 800 PEDILPDLS---EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred chhhHHHHH---HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 766654432 11111111122456666779999999999999999999999999999999988899999999998887
Q ss_pred cCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002697 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (891)
Q Consensus 292 ~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a 371 (891)
. ....+..++.+++..++..... | +..-+|++|
T Consensus 877 ~--~a~~vsd~~~ev~~~Il~l~~~----------------------------------------d-----~s~~vRRaA 909 (982)
T KOG4653|consen 877 L--LAFQVSDFFHEVLQLILSLETT----------------------------------------D-----GSVLVRRAA 909 (982)
T ss_pred H--HhhhhhHHHHHHHHHHHHHHcc----------------------------------------C-----CchhhHHHH
Confidence 6 2233344555555555432221 0 012479999
Q ss_pred HHHHHHHHHHcCcchhhh
Q 002697 372 AAALDVLSNVFGDEILPT 389 (891)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~ 389 (891)
+..+..+-...|...+|.
T Consensus 910 v~li~~lL~~tg~dlLpi 927 (982)
T KOG4653|consen 910 VHLLAELLNGTGEDLLPI 927 (982)
T ss_pred HHHHHHHHhccchhhHHH
Confidence 999999888888766653
No 128
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.74 E-value=0.009 Score=59.25 Aligned_cols=248 Identities=17% Similarity=0.124 Sum_probs=141.9
Q ss_pred HhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHh
Q 002697 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR 517 (891)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~ 517 (891)
+-..|.++++.+|..|..+|+.+.+.++.. ........-++..+...+.|. ..+.. +..++..+.. ....-...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~-~~~~~-~l~gl~~L~~-~~~~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDH-ACVQP-ALKGLLALVK-MKNFSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccH-hhHHH-HHHHHHHHHh-CcCCChhh
Confidence 345678999999999999999998877642 113444566777777778653 33433 4777777773 32222233
Q ss_pred HHHHHHHHHHHHc--ccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcc-hHhHHHHHHHHHH
Q 002697 518 LEIILQHLMMAFG--KYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQ 594 (891)
Q Consensus 518 l~~il~~l~~~l~--~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~l~~i~~ 594 (891)
...++..+.+-.. ......|..+++.+..+......... .+-+.++..+++.+... .||. +.-+++.+..+..
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~--~~~~~fv~~~i~~~~gE--kDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ--SMGDDFVYGFIQLIDGE--KDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH--hchhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHH
Confidence 4555555554332 22335566778888887776443332 23344455555555442 3443 3445555555555
Q ss_pred HhccccccchHHHHHHHHHHHHHHHHHhhcCc-ccCCCCchhHHHHHhhhHHHHHHHHh--hhHHhhhccchHHHHHHHH
Q 002697 595 ALGAGFTQFAQPVFQRCINIIQTQQLAKVDSV-AAGAQYDKEFVVCCLDLLSGLAEGLG--SGIESLVAQSNLRDMLLQC 671 (891)
Q Consensus 595 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~-~~~~e~d~~~~~~~~~~l~~l~~~~~--~~~~~~~~~~~l~~~l~~~ 671 (891)
... +.++.+.++..+.-.+= ..-+..++ ..+.. ..++.. .+-..+. ..|.+ ..+|+++.-
T Consensus 154 ~~~--~~~~~e~lFd~~~cYFP--I~F~pp~~dp~~IT-~edLk~-------~L~~cl~s~~~fa~-----~~~p~LleK 216 (262)
T PF14500_consen 154 EFD--ISEFAEDLFDVFSCYFP--ITFRPPPNDPYGIT-REDLKR-------ALRNCLSSTPLFAP-----FAFPLLLEK 216 (262)
T ss_pred hcc--cchhHHHHHHHhhheee--eeeeCCCCCCCCCC-HHHHHH-------HHHHHhcCcHhhHH-----HHHHHHHHH
Confidence 443 35555555554322110 00011111 00000 112222 2222222 12333 378888888
Q ss_pred hcCCChHHHHHHHHHHhHHHHhch-HhhHHhHHHHHHHHHHh
Q 002697 672 CMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQ 712 (891)
Q Consensus 672 ~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~ 712 (891)
+.++...+|..++.++..++..++ ..+.+|+..++..+...
T Consensus 217 L~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 217 LDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999888 56889999998877654
No 129
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.71 E-value=0.013 Score=62.10 Aligned_cols=241 Identities=15% Similarity=0.039 Sum_probs=152.4
Q ss_pred HHHhHhhhhh-cCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCC
Q 002697 94 IKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (891)
Q Consensus 94 i~~~ll~~L~-~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~ 172 (891)
....++..|. +++..++..++..+. ..+ -+..+..|...+.++++.+|.++...|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~----~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------------ 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---AQE----DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG------------ 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---ccC----ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc------------
Confidence 4566778884 567777664332221 111 12347888888889898899999999964322
Q ss_pred CCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 002697 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (891)
Q Consensus 173 ~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~ 252 (891)
+...+.+...+.+.++.+|..++.++...... -.+.+..+++++++.+|..++.++..+....
T Consensus 116 ------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~ 178 (410)
T TIGR02270 116 ------RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-----------PGPALEAALTHEDALVRAAALRALGELPRRL 178 (410)
T ss_pred ------hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-----------hHHHHHHHhcCCCHHHHHHHHHHHHhhcccc
Confidence 56678899999999999999999777763321 1234555677899999999999998876421
Q ss_pred hhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCC
Q 002697 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESL 332 (891)
Q Consensus 253 ~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~ 332 (891)
.++.+.....+.++.||..|+..+..+... ... ..++.....
T Consensus 179 ----------a~~~L~~al~d~~~~VR~aA~~al~~lG~~----~A~--------~~l~~~~~~---------------- 220 (410)
T TIGR02270 179 ----------SESTLRLYLRDSDPEVRFAALEAGLLAGSR----LAW--------GVCRRFQVL---------------- 220 (410)
T ss_pred ----------chHHHHHHHcCCCHHHHHHHHHHHHHcCCH----hHH--------HHHHHHHhc----------------
Confidence 122233457889999999999887655321 111 111110000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHH
Q 002697 333 PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAA 412 (891)
Q Consensus 333 ~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa 412 (891)
.++..+..+...+... |.. ..++.+...+++ ...|.++
T Consensus 221 ------------------------------~g~~~~~~l~~~lal~----~~~---~a~~~L~~ll~d-----~~vr~~a 258 (410)
T TIGR02270 221 ------------------------------EGGPHRQRLLVLLAVA----GGP---DAQAWLRELLQA-----AATRREA 258 (410)
T ss_pred ------------------------------cCccHHHHHHHHHHhC----Cch---hHHHHHHHHhcC-----hhhHHHH
Confidence 0011222222222211 332 455566666654 3479999
Q ss_pred HHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHH
Q 002697 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (891)
Q Consensus 413 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 462 (891)
+.++|.+... ..++.++..+.|+. ++..|.+++.++..
T Consensus 259 ~~AlG~lg~p----------~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 259 LRAVGLVGDV----------EAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHcCCc----------chHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 9999987652 24667777777764 89999999988865
No 130
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.70 E-value=0.00026 Score=57.62 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=66.2
Q ss_pred HHHHhhhc-CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc
Q 002697 435 VAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (891)
Q Consensus 435 ~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~ 513 (891)
+|.+++.+ +|+++.+|..++++++++.. ..+++.+.+.+.|+++.||..|+.+|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD---------------PEAIPALIELLKDEDPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH---------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC---------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------
Confidence 46677777 89999999999999996532 266788888889999999999999999763
Q ss_pred chHhHHHHHHHHHHHHcccchhH-HHHHHHHHH
Q 002697 514 LAPRLEIILQHLMMAFGKYQRRN-LRIVYDAIG 545 (891)
Q Consensus 514 ~~~~l~~il~~l~~~l~~~~~~~-~~~~~~al~ 545 (891)
-+..++.|.+.+.+.+... +..+..+++
T Consensus 60 ----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2557777788887765544 556777664
No 131
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.094 Score=54.66 Aligned_cols=266 Identities=15% Similarity=0.145 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhhccCCch
Q 002697 218 SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFEAQLPH 296 (891)
Q Consensus 218 ~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~v~~~a~~~l~~l~~~~~~~ 296 (891)
.+..++..+..-..|++..+|..+|.+|+..++..|+....|...++..++..+-| .+.+|..+++.++..+.+.. ..
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~-~~ 333 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA-SN 333 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-hh
Confidence 34555666666677888999999999999999999999999999888888876654 46789899988887766542 22
Q ss_pred hhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHH
Q 002697 297 ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALD 376 (891)
Q Consensus 297 ~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~ 376 (891)
..+.+|+-.+.-.+.+ .|+ + +++ ..|.+|..+++
T Consensus 334 ~~l~~~~l~ialrlR~----------l~~---------------------------s---e~~------~~R~aa~~Lfg 367 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRT----------LFD---------------------------S---EDD------KMRAAAFVLFG 367 (533)
T ss_pred cchhhhchhHHHHHHH----------HHH---------------------------h---cCh------hhhhhHHHHHH
Confidence 2334444333222211 111 0 111 37999999999
Q ss_pred HHHHHcCcchhhhhHHHHH----H---hhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHH
Q 002697 377 VLSNVFGDEILPTLMPVIQ----A---KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLI 449 (891)
Q Consensus 377 ~l~~~~~~~~~~~l~~~l~----~---~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 449 (891)
.++...|...-......+. . .+++++ +.+-.|+-..+.....+.. .+.+...++. .+ |....
T Consensus 368 ~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~---p~va~ACr~~~~~c~p~l~---rke~~~~~q~---~l-d~~~~- 436 (533)
T KOG2032|consen 368 ALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN---PYVARACRSELRTCYPNLV---RKELYHLFQE---SL-DTDMA- 436 (533)
T ss_pred HHHHHcCCCchhhhHHHHHhccccceeeeCCCC---hHHHHHHHHHHHhcCchhH---HHHHHHHHhh---hh-HHhHH-
Confidence 9999986532222222222 2 233444 5544433332322222211 1111112221 11 11111
Q ss_pred HHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHH
Q 002697 450 RSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMM 527 (891)
Q Consensus 450 r~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~il~~l~~ 527 (891)
|..+ ...+++..+.+ ...+.+.-.+......++...+.||+++..--.++..+..+..-++. ..+...+..
T Consensus 437 ~~q~--Fyn~~c~~L~~-----i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~ 509 (533)
T KOG2032|consen 437 RFQA--FYNQWCIQLNH-----IHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLST 509 (533)
T ss_pred HHHH--HHHHHHHHHhh-----hCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHH
Confidence 1111 11111211211 12223333334444445555668888888777777777655554443 445555555
Q ss_pred HHcccchhHHHHHHHHHHHHH
Q 002697 528 AFGKYQRRNLRIVYDAIGTLA 548 (891)
Q Consensus 528 ~l~~~~~~~~~~~~~al~~l~ 548 (891)
...++-.+++..+.+|++.+.
T Consensus 510 l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 510 LWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HccCCCchhHHHHHHHhhhHh
Confidence 555666677777777777654
No 132
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.68 E-value=0.13 Score=55.71 Aligned_cols=139 Identities=13% Similarity=0.056 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHhhcchhhhh--hhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-HHHHH
Q 002697 406 WKDREAAVLALGAIAEGCIKGLY--PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLM 482 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~~~~~~~~~--~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~l~ 482 (891)
...+.||+.++..++.... .+. ..-..++..+++.+.||...|..++.-++.++.-.+... ...++ ...+.
T Consensus 391 ~~~~aaa~l~~~s~srsV~-aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~-----kskfl~~ngId 464 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVS-ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL-----KSKFLRNNGID 464 (678)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH-----HHHHHHcCcHH
Confidence 6788899998887776432 122 122346777888889999999999988887777655432 22333 34677
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhccc--chHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHH
Q 002697 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEE--LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (891)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~--~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~ 550 (891)
.+.+.+.+....+|..+.++|..+.=.+.+. +.++-.--.+.+....++++.++++.++..+..+...
T Consensus 465 ~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 465 ILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 7888888888999999999999887766443 3445555566677777888899999888888777654
No 133
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=97.67 E-value=0.028 Score=58.06 Aligned_cols=253 Identities=14% Similarity=0.175 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHhcccCCchhhhhhhhHHHHH-HHHcCCCCCcch--HhHHHHHHHHHHHhccccccchHHHHHHHHHHH
Q 002697 539 IVYDAIGTLADAVGFELNQPVYLDILMPPLIA-KWQQLPNSDKDL--FPLLECFTSIAQALGAGFTQFAQPVFQRCINII 615 (891)
Q Consensus 539 ~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~~~~~~--~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l 615 (891)
..+..+.++++...+.- ...+.++|++++ .+.....+.+.. ..++.+++.++..+|..+.++++.++..+....
T Consensus 46 eIL~Li~t~i~~~~~~~---~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 46 EILKLIETFISKAEDPE---EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHT-S-HH---HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHH---HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44555555555443221 234455555555 222222123333 578999999999999988898888777654321
Q ss_pred HHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhch
Q 002697 616 QTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP 695 (891)
Q Consensus 616 ~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 695 (891)
- +++.+-+ .+-|+.|..-+.++..+.++|.
T Consensus 123 l-------------------------------------------------~MI~~d~-~~yPe~r~~ff~LL~~i~~~~f 152 (319)
T PF08767_consen 123 L-------------------------------------------------PMINKDF-EEYPEHRVNFFKLLRAINEHCF 152 (319)
T ss_dssp H-------------------------------------------------HHHSSTS-SSSHHHHHHHHHHHHHHHHHHT
T ss_pred H-------------------------------------------------HHHHhhh-hhChHHHHHHHHHHHHHHHHhH
Confidence 1 1110000 1346777777788888888776
Q ss_pred HhhHH----hHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchh---h-----hhhHHHHHHHHHHHHhcCChh
Q 002697 696 VHLQA----RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ---E-----ISPIVMTVVLCLVPILKHSEE 763 (891)
Q Consensus 696 ~~~~~----~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~---~-----~~~~~~~il~~l~~~l~~~~~ 763 (891)
..+.. .+..++..+.-.+++. +.++.+.++.++..+...... + +..|+-.++..++.++.++.
T Consensus 153 ~~l~~lp~~~f~~~idsi~wg~kh~----~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~- 227 (319)
T PF08767_consen 153 PALLQLPPEQFKLVIDSIVWGFKHT----NREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD- 227 (319)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHTSS----SHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc-
Confidence 55543 3456667777777777 678999999999999876543 1 46678888999999998876
Q ss_pred hhhhHHHhHHHHHhhhhhhc-CCcc-CcchhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhC-hhhhHhhHHHHhhHh
Q 002697 764 LNKSLIENSAITLGRLAWVC-PELV-SPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKAN-PSGALSSLVFMCRAI 840 (891)
Q Consensus 764 ~~~~~~~~~~~~l~~l~~~~-~~~~-~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~-~~~~~~~l~~~~~~~ 840 (891)
++.....-+..+.++.... .+.+ .|-.+ +. . .-+....+.+..++... |..-...+..++..+
T Consensus 228 -Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~----------~~-~--~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~L 293 (319)
T PF08767_consen 228 -HKSGFKLQSQILSNLFRLVESGSIQVPLFD----------PG-M--SNQEFVSEYIANLLSEAFPNLSPKQIENFVQGL 293 (319)
T ss_dssp --GGGHHHHHHHHHHHHHHHHTT-SSSSSSS----------TT-T---HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHcccccccccC----------CC-C--ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 5666666667777777531 1111 11111 11 1 11222233344444432 322234555566666
Q ss_pred hcccccCchhHHHHHHHHHHHHHh
Q 002697 841 ASWHEIRSEELHNEVCQVLHGYKQ 864 (891)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~l~~~~~ 864 (891)
.++.+ +..+++..+++.+..+|+
T Consensus 294 f~~~~-d~~~Fk~~lrDFlI~~ke 316 (319)
T PF08767_consen 294 FELNN-DPEKFKTHLRDFLIQLKE 316 (319)
T ss_dssp HHTTT--HHHHHHHHHHHHHHHTS
T ss_pred HHhcC-CHHHHHHHHHHHhhhhhh
Confidence 65443 235688888888887776
No 134
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.66 E-value=0.18 Score=56.81 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=69.6
Q ss_pred hhHHHHHHhhc-CCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhH
Q 002697 180 IFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (891)
Q Consensus 180 ~l~~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~ 258 (891)
.++-.+...++ +....++..|+..+.++..+... ...++..+-.|..+..|+-..+|+.++..|+.+....|..+.-
T Consensus 576 ~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~--~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~ 653 (1529)
T KOG0413|consen 576 DVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDE--ASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSL 653 (1529)
T ss_pred HHHHHHHHHhccCCCcccchhhHHHHHHHHhccch--hhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhh
Confidence 34455566666 44557899999999998876542 2233444445555567777889999999999998887766521
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 002697 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (891)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l 289 (891)
-..-+..++..+.+.+..+...|.+++..+
T Consensus 654 -~~~wl~~li~~~~d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 654 -SSKWLHTLISMLNDTESDVTEHARKLIMKV 683 (1529)
T ss_pred -hHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 112222333445667777888888876553
No 135
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.65 E-value=0.12 Score=56.39 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhc
Q 002697 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (891)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~ 141 (891)
..+...+++|+.+ |.+.|...|. ..+...+.++.+..|.+..||..+...+-.+++.. +...+.+...|.+++.
T Consensus 33 kg~~k~K~Laaq~----I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~ 106 (556)
T PF05918_consen 33 KGSPKEKRLAAQF----IPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQ 106 (556)
T ss_dssp GS-HHHHHHHHHH----HHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHH----HHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHh
Confidence 3468899999855 4566665544 44455578888888999999999888888888754 5566889999999999
Q ss_pred cCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhc---CCCHHHHHHHHHHHHHHhcccchhhH--
Q 002697 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ---SPHTSLRKLSLGSVNQFIMLMPSALF-- 216 (891)
Q Consensus 142 ~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~~~~~vr~~al~~l~~~~~~~~~~~~-- 216 (891)
++++..+...=.+|..+...-+. ..+..++.-+. ..+..+|..+++.+..-+..++..+.
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d~k---------------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p 171 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQDPK---------------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTP 171 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH-HH---------------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS--
T ss_pred cccHHHHHHHHHHHHHHHhcCcH---------------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhc
Confidence 99887666666666666653322 12233333332 45778999999999877665543322
Q ss_pred -HhHHH-HHHHHHHhhCC
Q 002697 217 -VSMDQ-YLQGLFLLSND 232 (891)
Q Consensus 217 -~~~~~-~l~~l~~~~~~ 232 (891)
..+.. ++..+...+.|
T Consensus 172 ~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 172 QKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp -HHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 22333 34455556655
No 136
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.64 E-value=0.019 Score=61.07 Aligned_cols=243 Identities=15% Similarity=0.009 Sum_probs=147.8
Q ss_pred HHHHHHHHHHhc-cCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 002697 130 LELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (891)
Q Consensus 130 ~~ll~~L~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (891)
+..++.+...+. ++++.++..+..++... . -...+..++..+.++++.||..+.++|+.+-
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~----~--------------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ----E--------------DALDLRSVLAVLQAGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc----C--------------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 344455555553 45666666555544210 0 0223788999999999999999999998643
Q ss_pred cccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 002697 209 MLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (891)
Q Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 288 (891)
. +...+.+..++.+.++.+|..++..+..... + -.+.+...+++.+..|+..|+..+..
T Consensus 115 ~----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~---~--------~~~~L~~~L~d~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 115 G----------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH---D--------PGPALEAALTHEDALVRAAALRALGE 173 (410)
T ss_pred c----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---C--------hHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 2 2234556677788889999888866655221 1 12344455679999999999999887
Q ss_pred hhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHH
Q 002697 289 YFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR 368 (891)
Q Consensus 289 l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r 368 (891)
+.... .++.+... +. + .+ -.+|
T Consensus 174 l~~~~--------a~~~L~~a----l~-------------------------------------d---~~------~~VR 195 (410)
T TIGR02270 174 LPRRL--------SESTLRLY----LR-------------------------------------D---SD------PEVR 195 (410)
T ss_pred hcccc--------chHHHHHH----Hc-------------------------------------C---CC------HHHH
Confidence 75431 11111111 11 0 00 1389
Q ss_pred HHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChH
Q 002697 369 KCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPL 448 (891)
Q Consensus 369 ~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 448 (891)
..|...+..+ |.. ...+.+........ +..+.....+++... -+..++.+...++++.
T Consensus 196 ~aA~~al~~l----G~~---~A~~~l~~~~~~~g---~~~~~~l~~~lal~~----------~~~a~~~L~~ll~d~~-- 253 (410)
T TIGR02270 196 FAALEAGLLA----GSR---LAWGVCRRFQVLEG---GPHRQRLLVLLAVAG----------GPDAQAWLRELLQAAA-- 253 (410)
T ss_pred HHHHHHHHHc----CCH---hHHHHHHHHHhccC---ccHHHHHHHHHHhCC----------chhHHHHHHHHhcChh--
Confidence 9998888444 331 22233333333444 444444444443331 1256777788888865
Q ss_pred HHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002697 449 IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (891)
Q Consensus 449 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (891)
+|..+++++|++.. ...++.++..+.|. .++..|..++..+.-
T Consensus 254 vr~~a~~AlG~lg~---------------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 254 TRREALRAVGLVGD---------------VEAAPWCLEAMREP--PWARLAGEAFSLITG 296 (410)
T ss_pred hHHHHHHHHHHcCC---------------cchHHHHHHHhcCc--HHHHHHHHHHHHhhC
Confidence 99999999998754 13566777777764 388888888877653
No 137
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.63 E-value=0.015 Score=57.70 Aligned_cols=248 Identities=18% Similarity=0.174 Sum_probs=153.1
Q ss_pred HHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchh
Q 002697 135 ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (891)
Q Consensus 135 ~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~ 214 (891)
.|-..+.++++..|..|+.+|+.+++..+...-+ ...+..++..+..-+. +...-..+++++..++.. ...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~------~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~-~~~ 73 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLS------RQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM-KNF 73 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhcc------HHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC-cCC
Confidence 4566788999999999999999999988753211 1234555555555553 333344447777776632 111
Q ss_pred hHHhHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhhc
Q 002697 215 LFVSMDQYLQGLFLLSN--DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFE 291 (891)
Q Consensus 215 ~~~~~~~~l~~l~~~~~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~v~~~a~~~l~~l~~ 291 (891)
-......+++.+++... .-....|..+++.+..+.+.+.+.+...-..++..+++.+.+ .|+.--..+++.+..+..
T Consensus 74 ~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 74 SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 12224455666665332 223578999999999999888777655556777777777664 577777788888887766
Q ss_pred cCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002697 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (891)
Q Consensus 292 ~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a 371 (891)
. . . +.++.++++..+.-+...+ .+|.- ++ + .....
T Consensus 154 ~--~-~-~~~~~e~lFd~~~cYFPI~---------------------F~pp~--------~d-------p-----~~IT~ 188 (262)
T PF14500_consen 154 E--F-D-ISEFAEDLFDVFSCYFPIT---------------------FRPPP--------ND-------P-----YGITR 188 (262)
T ss_pred h--c-c-cchhHHHHHHHhhheeeee---------------------eeCCC--------CC-------C-----CCCCH
Confidence 5 1 1 2566667666665444321 00000 00 0 00111
Q ss_pred HHHHHHHHHHc--CcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHh
Q 002697 372 AAALDVLSNVF--GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLI 439 (891)
Q Consensus 372 ~~~l~~l~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~-~~~~~~l~~i~~~l~ 439 (891)
..+-..+-..+ .+.+-+..+|.+.+-+.++. ...|.-++.++....+..+ +.+.+|+..++..+-
T Consensus 189 edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~---~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 189 EDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTS---PSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 12222222222 23556788999999999887 8899999999888877554 446677777776654
No 138
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.60 E-value=0.0019 Score=63.43 Aligned_cols=187 Identities=17% Similarity=0.186 Sum_probs=114.6
Q ss_pred HHHHHhhcc-CCCcchHHHHHHHHHHHHHhhcchhhhhhhHH--HHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhh
Q 002697 392 PVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (891)
Q Consensus 392 ~~l~~~l~~-~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 468 (891)
+.+..+++. .+ +..++.++.+++..+..... ...+. ..++.+...+++|++.+|..|++++..++.....
T Consensus 15 ~~Ll~lL~~t~d---p~i~e~al~al~n~aaf~~n--q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en-- 87 (254)
T PF04826_consen 15 QKLLCLLESTED---PFIQEKALIALGNSAAFPFN--QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN-- 87 (254)
T ss_pred HHHHHHHhcCCC---hHHHHHHHHHHHhhccChhH--HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh--
Confidence 344445554 45 99999999999987653321 12222 3678899999999999999999999998765432
Q ss_pred CCCcchhhHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHH
Q 002697 469 GHQNGREQFEKVLMGLLKRIL-D-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (891)
Q Consensus 469 ~~~~~~~~~~~~l~~l~~~l~-d-~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~ 546 (891)
....+..++.+.+... + -+..+|..+.++|.++.-. ......+...++.++.++...+...+..++.++..
T Consensus 88 -----~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 88 -----QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred -----HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2223333444444332 2 2578999999999887422 22223334456666778888777777778888877
Q ss_pred HHHHhc--ccCCchhhhhhhhHHHHHHHHcCCCCCcc-hHhHHHHHHHHHHHhcc
Q 002697 547 LADAVG--FELNQPVYLDILMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQALGA 598 (891)
Q Consensus 547 l~~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~l~~i~~~~~~ 598 (891)
++..-. ... .-.+.+..++..++... +++ +..++..+..|...+++
T Consensus 161 LS~np~~~~~L----l~~q~~~~~~~Lf~~~~--~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 161 LSENPDMTREL----LSAQVLSSFLSLFNSSE--SKENLLRVLTFFENINENIKK 209 (254)
T ss_pred hccCHHHHHHH----HhccchhHHHHHHccCC--ccHHHHHHHHHHHHHHHhhCc
Confidence 765311 111 11234445555555432 233 35666666666665554
No 139
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.57 E-value=0.054 Score=57.28 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=71.1
Q ss_pred HHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCC
Q 002697 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (891)
Q Consensus 95 ~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~ 174 (891)
-..+++.+.+++..+|..++..++.+.. ...++.+...+.+.++.+|..+..+|+.+-.
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~~~-------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------------- 103 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGELGS-------EEAVPLLRELLSDEDPRVRDAAADALGELGD-------------- 103 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhhch-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------------
Confidence 3567778888899999998887554432 5678888999999999999999997754322
Q ss_pred CcchhhhHHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 002697 175 ECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIM 209 (891)
Q Consensus 175 ~~~~~~l~~~l~~~l~-~~~~~vr~~al~~l~~~~~ 209 (891)
+.-++.++..+. +++..||..+..+|+.+-.
T Consensus 104 ----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 104 ----PEAVPPLVELLENDENEGVRAAAARALGKLGD 135 (335)
T ss_pred ----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc
Confidence 455777888887 6899999999999998764
No 140
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.2 Score=55.05 Aligned_cols=146 Identities=12% Similarity=0.152 Sum_probs=89.3
Q ss_pred chhHhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCCh---h--------------h-------------hhh---
Q 002697 721 TVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSE---E--------------L-------------NKS--- 767 (891)
Q Consensus 721 ~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~---~--------------~-------------~~~--- 767 (891)
++.||..|.+.+.+.++..+.++.||++.++..+.+.|.... + + +..
T Consensus 548 ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qa 627 (980)
T KOG2021|consen 548 NENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQA 627 (980)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHH
Confidence 678999999999999999999999999999999999992110 0 0 000
Q ss_pred --------------------------------HH--HhHHHHHhhhhhhcCCccCc--------chhHHHHHHHhhccCC
Q 002697 768 --------------------------------LI--ENSAITLGRLAWVCPELVSP--------HMEHFMQPWCIALSMI 805 (891)
Q Consensus 768 --------------------------------~~--~~~~~~l~~l~~~~~~~~~~--------~~~~~l~~~~~~l~~~ 805 (891)
+. .+++.++|.+.+..+....+ .....++.++-.|...
T Consensus 628 ay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f 707 (980)
T KOG2021|consen 628 AYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFF 707 (980)
T ss_pred HHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhc
Confidence 00 11222333333322222110 1234455555555554
Q ss_pred CCchHHHHHHHH-HHHHHhhChhhhHhhHHHHhhHhhcccccC-chhHHHHHHHHHHHHHhhc
Q 002697 806 RDDTEKEDAFRG-LCAMVKANPSGALSSLVFMCRAIASWHEIR-SEELHNEVCQVLHGYKQML 866 (891)
Q Consensus 806 ~~~~e~~~~~~~-l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 866 (891)
...|.-+.+.+. +.+++-.-.+.++|.+|..+..+++-.++. --++..++.|+++.|+...
T Consensus 708 ~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~ 770 (980)
T KOG2021|consen 708 NKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDC 770 (980)
T ss_pred cccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555 677777777788899999999998843321 1134456778888887543
No 141
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.31 Score=58.32 Aligned_cols=166 Identities=13% Similarity=0.056 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhch-hhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhh
Q 002697 703 SDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW 781 (891)
Q Consensus 703 ~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 781 (891)
+.++..+.....++. +..+|..++..+-..+.... .........|-..+...+.+.. .++++.++.+++-++.
T Consensus 1525 ~e~l~~l~~~~~~~~---tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~---i~vre~Aa~~Lsgl~~ 1598 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSS---TWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQ---IEVREEAAKCLSGLLQ 1598 (1710)
T ss_pred HHHHHHHHHHhcccc---hHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchH---HHHHHHHHHHHHHHHh
Confidence 344444443333332 67888887777665553221 1233456677777778887764 5799999999998887
Q ss_pred hcCCccCcchhHHHHHHHhhccCCCCchH-HHHHHHHHHHHHhhChhhhHhhHHHHhhHhhcccccCchhHHHHHHHHHH
Q 002697 782 VCPELVSPHMEHFMQPWCIALSMIRDDTE-KEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLH 860 (891)
Q Consensus 782 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~e-~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 860 (891)
....... +......-........+++ .-.++.|+..++-.-|-.+...++..+..+.+|...+ .-.+..+++.+.
T Consensus 1599 ~s~~~~~---~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvs 1674 (1710)
T KOG1851|consen 1599 GSKFQFV---SDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVS 1674 (1710)
T ss_pred ccccccc---hHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHH
Confidence 6544432 2333333333333333333 4478889999999999888888899999888886533 457889999999
Q ss_pred HHHhhcChhhHHHHHhcCC
Q 002697 861 GYKQMLRNGAWDQCMSALE 879 (891)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~ 879 (891)
.+++.+.+ .|+.-=.++-
T Consensus 1675 eFrrth~D-~W~~~k~~f~ 1692 (1710)
T KOG1851|consen 1675 EFRRTHAD-TWREHKQSFN 1692 (1710)
T ss_pred HHHHHhhh-hhhhhhhccC
Confidence 99999985 8985444443
No 142
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.54 E-value=0.26 Score=55.60 Aligned_cols=140 Identities=14% Similarity=0.154 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Q 002697 677 SDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVP 756 (891)
Q Consensus 677 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~ 756 (891)
+-+|..++-.++.++-.-+.-.+. .+|.+.+.|.... ...+|+|.+.++|.++.+...-...|++.|- .
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr----~~P~lvkeLe~~~---~~aiRnNiV~am~D~C~~YTam~d~YiP~I~----~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKR----LMPMLVKELEYNT---AHAIRNNIVLAMGDICSSYTAMTDRYIPMIA----A 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHhhh---HHHHhcceeeeehhhHHHHHHHHHHhhHHHH----H
Confidence 346777888888887765543333 5556666666543 5689999999999999887665666776665 4
Q ss_pred HhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh-ChhhhHhhHH
Q 002697 757 ILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKA-NPSGALSSLV 834 (891)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~-~~~~~~~~l~ 834 (891)
.|.++. .-+|..+++.++||+...-- ..-..++-.++.++-+ ...+.+..+=-.+..+++. +|...-.++-
T Consensus 1014 ~L~Dp~---~iVRrqt~ilL~rLLq~~~v---Kw~G~Lf~Rf~l~l~D-~~edIr~~a~f~~~~vL~~~~P~~f~~~FV 1085 (1529)
T KOG0413|consen 1014 SLCDPS---VIVRRQTIILLARLLQFGIV---KWNGELFIRFMLALLD-ANEDIRNDAKFYISEVLQSEEPNFFPLNFV 1085 (1529)
T ss_pred HhcCch---HHHHHHHHHHHHHHHhhhhh---hcchhhHHHHHHHHcc-cCHHHHHHHHHHHHHHHhhcCccchHHHHH
Confidence 556664 67888899999999975321 1223344444444433 2223344444456677666 4433333333
No 143
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.44 E-value=0.036 Score=58.63 Aligned_cols=250 Identities=22% Similarity=0.264 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 002697 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (891)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (891)
+...+.+.+.+.+.++.+|..+...++.+-. ...+|.+...+.+.++.+|..|..+++.+-.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~ 103 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELGS------------------EEAVPLLRELLSDEDPRVRDAAADALGELGD 103 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhch------------------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Confidence 4667778888888888999999888643221 5678999999999999999999997777642
Q ss_pred ccchhhHHhHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCC------------H
Q 002697 210 LMPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTD------------D 276 (891)
Q Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~------------~ 276 (891)
- .-++.+...+. +.+..+|..+..+|..+-.... +..++. .+.+.. .
T Consensus 104 ~----------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a------~~~l~~----~l~~~~~~~a~~~~~~~~~ 163 (335)
T COG1413 104 P----------EAVPPLVELLENDENEGVRAAAARALGKLGDERA------LDPLLE----ALQDEDSGSAAAALDAALL 163 (335)
T ss_pred h----------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh------hHHHHH----HhccchhhhhhhhccchHH
Confidence 1 12333444444 7889999999999987754322 122222 222222 1
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCC
Q 002697 277 DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (891)
Q Consensus 277 ~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 356 (891)
.+|..+.+.+..+... ..++.+...+..
T Consensus 164 ~~r~~a~~~l~~~~~~------------~~~~~l~~~l~~---------------------------------------- 191 (335)
T COG1413 164 DVRAAAAEALGELGDP------------EAIPLLIELLED---------------------------------------- 191 (335)
T ss_pred HHHHHHHHHHHHcCCh------------hhhHHHHHHHhC----------------------------------------
Confidence 3444444444433221 001111111100
Q ss_pred CCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHH
Q 002697 357 DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVA 436 (891)
Q Consensus 357 ~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~ 436 (891)
. ...+|..|...++.+.... ..+.+.+...+.+.+ |.+|..++.++|.+... ...+
T Consensus 192 ~------~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~---~~vr~~~~~~l~~~~~~----------~~~~ 247 (335)
T COG1413 192 E------DADVRRAAASALGQLGSEN-----VEAADLLVKALSDES---LEVRKAALLALGEIGDE----------EAVD 247 (335)
T ss_pred c------hHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCC---HHHHHHHHHHhcccCcc----------hhHH
Confidence 0 1137888888887665543 244566666777777 99999988888766532 2345
Q ss_pred HHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002697 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (891)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (891)
.+...+.+.++.++..+....+.+- .......+...+.+....++..+..++..+..
T Consensus 248 ~l~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 248 ALAKALEDEDVILALLAAAALGALD---------------LAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred HHHHHHhccchHHHHHHHHHhcccC---------------chhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 5666667777777766655554110 01122334455566677788888777776554
No 144
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.42 E-value=0.36 Score=54.49 Aligned_cols=153 Identities=16% Similarity=0.118 Sum_probs=115.7
Q ss_pred HhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhh-hhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhh
Q 002697 700 ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQE-ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGR 778 (891)
Q Consensus 700 ~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~ 778 (891)
.++.+++|.+.+..... ....|.+-..+|..+..+.+.+ +.|.++.+++.|+..++-++ ..++-.+..++.-
T Consensus 863 RfF~~ivP~l~~~~~t~----~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D---~~v~vstl~~i~~ 935 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETA----PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPD---VIVRVSTLRTIPM 935 (1030)
T ss_pred HHHHhhHHHHHHHhccC----CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCc---cchhhhHhhhhhH
Confidence 46678999999988844 4578888889999988887744 78999999999999998875 5677778888888
Q ss_pred hhhhcCCccCcchhHHHHHHHhhccCCCC--chHHHHHHHHHHHHHhh-ChhhhHhhHHHHhhHhhcccccCchhHHHHH
Q 002697 779 LAWVCPELVSPHMEHFMQPWCIALSMIRD--DTEKEDAFRGLCAMVKA-NPSGALSSLVFMCRAIASWHEIRSEELHNEV 855 (891)
Q Consensus 779 l~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~e~~~~~~~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 855 (891)
+....+.....|++.+++.++..=....+ -..|..|.+++-.+-.. .+..+.+.-+.+++++...-. |-|..+
T Consensus 936 ~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld----DkKRlV 1011 (1030)
T KOG1967|consen 936 LLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD----DKKRLV 1011 (1030)
T ss_pred HHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC----cHHHHH
Confidence 88888888888999999999865444332 34688999999999885 445677888888888887432 345445
Q ss_pred HHHHHHHH
Q 002697 856 CQVLHGYK 863 (891)
Q Consensus 856 ~~~l~~~~ 863 (891)
+..-...+
T Consensus 1012 R~eAv~tR 1019 (1030)
T KOG1967|consen 1012 RKEAVDTR 1019 (1030)
T ss_pred HHHHHHHh
Confidence 54433333
No 145
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.42 E-value=0.0018 Score=58.79 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHH---HHHhc
Q 002697 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEE-AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL---ADAVG 552 (891)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~-~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l---~~~~~ 552 (891)
++..++.++.++.+....-+--|...+..+++. .++.+.|.+++++..+.++|+..+..+...++.++..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 568899999999988777888888899999998 68889999999999999999999999999999999998 66788
Q ss_pred ccCCchhhhhhhhHHHH
Q 002697 553 FELNQPVYLDILMPPLI 569 (891)
Q Consensus 553 ~~~~~~~~~~~l~~~l~ 569 (891)
+... ||+.+++|.+-
T Consensus 116 ~aLv--PyyrqLLp~ln 130 (183)
T PF10274_consen 116 EALV--PYYRQLLPVLN 130 (183)
T ss_pred HHHH--HHHHHHHHHHH
Confidence 8876 99999998654
No 146
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0049 Score=59.87 Aligned_cols=148 Identities=17% Similarity=0.254 Sum_probs=113.6
Q ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCC
Q 002697 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (891)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 470 (891)
+......+.+.+ |...-.++..+..+++.-.+.+.+.+..++..+++.++++...|-.+||.+++.+.+.+...
T Consensus 90 l~~~l~~L~s~d---W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--- 163 (334)
T KOG2933|consen 90 LKQALKKLSSDD---WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--- 163 (334)
T ss_pred HHHHHHHhchHH---HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH---
Confidence 333444566777 99999999999999998888888999999999999999999999999999999999887654
Q ss_pred CcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHH
Q 002697 471 QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (891)
Q Consensus 471 ~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~ 550 (891)
....++..+..|+..-.+.+.-||+.|-.||...+.+..+ ..+++.|..++++....++..+.-+.......
T Consensus 164 --i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 164 --IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred --HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccccee
Confidence 3446667777776666666788999999999988876543 23566667777777777776555555444444
Q ss_pred hc
Q 002697 551 VG 552 (891)
Q Consensus 551 ~~ 552 (891)
+|
T Consensus 236 l~ 237 (334)
T KOG2933|consen 236 LG 237 (334)
T ss_pred cc
Confidence 43
No 147
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.40 E-value=0.00019 Score=44.29 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.9
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHhhHHH
Q 002697 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (891)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 463 (891)
++|.+++.++|+++.||.+|+++++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 148
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.39 E-value=0.21 Score=54.57 Aligned_cols=285 Identities=13% Similarity=0.103 Sum_probs=144.2
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-cCCC----hHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccC
Q 002697 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYS-QFPD----FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM 86 (891)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~-~~p~----~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~ 86 (891)
+..+....+|..+.+ +.+ ..+-|-+.+-+|. ..|+ ++..++.++. +.+..+|..|.-.|-.. +.-
T Consensus 20 ~~~~~y~~il~~~kg-~~k-~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcE---Ded~~iR~~aik~lp~~-----ck~ 89 (556)
T PF05918_consen 20 QHEEDYKEILDGVKG-SPK-EKRLAAQFIPKFFKHFPDLQEEAINAQLDLCE---DEDVQIRKQAIKGLPQL-----CKD 89 (556)
T ss_dssp GGHHHHHHHHHGGGS--HH-HHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT----SSHHHHHHHHHHGGGG-------T
T ss_pred cCHHHHHHHHHHccC-CHH-HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh---cccHHHHHHHHHhHHHH-----HHh
Confidence 455677777777764 455 7777888887764 4776 4566667654 57899999987544221 122
Q ss_pred ChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhc-
Q 002697 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV- 165 (891)
Q Consensus 87 ~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~- 165 (891)
+++....+-..|.++|...++..+..+-.++..+.+.++......++..+... .+++..+|+.++..|..=+..+...
T Consensus 90 ~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~ 168 (556)
T PF05918_consen 90 NPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPEL 168 (556)
T ss_dssp --T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTT
T ss_pred HHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHH
Confidence 45566788889999999888888888888899999988777777777766543 2456788999888775444433332
Q ss_pred cccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhh------CCCCHHHHH
Q 002697 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS------NDPSAEVRK 239 (891)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~v~~ 239 (891)
+.+. +..-..++..+.+.|++-...-=...+.+|..+-.+....-......+++.+...+ ...+.+...
T Consensus 169 ~~p~-----~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Id 243 (556)
T PF05918_consen 169 LTPQ-----KEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESID 243 (556)
T ss_dssp S--------HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHH
T ss_pred hhch-----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHH
Confidence 1100 01123455566677776433222223333333222110011122233444444322 112344444
Q ss_pred HHHHHHHHHHhhChhhhhHhHHHHHHHHH----hhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhcc
Q 002697 240 LVCAAFNLLIEVRPSFLEPHLRNLFEYML----QVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (891)
Q Consensus 240 ~~~~~l~~l~~~~~~~~~~~l~~l~~~~~----~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~ 315 (891)
..+.|+..-....... ..-..++.++. -.+.+-+++.+...+..+..++.+..... ....++.++..++.+|.
T Consensus 244 rli~C~~~Alp~fs~~--v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 244 RLISCLRQALPFFSRG--VSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp HHHHHHHHHGGG-BTT--B--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhhHHhcCC--CChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCC
Confidence 4555543321111111 01123333333 23444456667777777777666522222 45667777777777777
No 149
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.38 E-value=0.94 Score=58.34 Aligned_cols=170 Identities=18% Similarity=0.221 Sum_probs=122.8
Q ss_pred HHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhH
Q 002697 649 EGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNA 728 (891)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a 728 (891)
..++..|.+.+.|+..+..+...+.++.-.++..+...+|.++...+..+.|++..........+.-+. ...++...
T Consensus 551 ~~l~~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg---~~r~~~~~ 627 (2341)
T KOG0891|consen 551 SSLNERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSG---MARTKEES 627 (2341)
T ss_pred hhhccchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcc---hHHhHHHH
Confidence 334466777777777888888888999999999999999998888887777887777666665555442 12233334
Q ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccCCCCc
Q 002697 729 CWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDD 808 (891)
Q Consensus 729 ~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 808 (891)
+.-+..++.....-+.+|+..++..+.+.+.++. ..+..++..+++.|.......+..++...++.+.+.+...+..
T Consensus 628 a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~---s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~ 704 (2341)
T KOG0891|consen 628 AKLLCELIISSPVLISPYVGPILLVLLPKLQDPS---SGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSL 704 (2341)
T ss_pred HHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccc---hhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhh
Confidence 4444444444445578999999999999998875 4555667888888888777655556677778888887776666
Q ss_pred hHHHHHHHHHHHHHhh
Q 002697 809 TEKEDAFRGLCAMVKA 824 (891)
Q Consensus 809 ~e~~~~~~~l~~l~~~ 824 (891)
..+..+.+.+.++...
T Consensus 705 ~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 705 GKRLAALKALGQLESS 720 (2341)
T ss_pred hchhHHHHHhhhhhcc
Confidence 7777888888887765
No 150
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.37 E-value=0.19 Score=63.09 Aligned_cols=332 Identities=14% Similarity=0.076 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHhhcchhhhhhhHHH----HHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcch--hhHHHHHH
Q 002697 409 REAAVLALGAIAEGCIKGLYPHLSE----IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGR--EQFEKVLM 482 (891)
Q Consensus 409 r~aa~~~l~~l~~~~~~~~~~~l~~----i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~l~ 482 (891)
|--++.-+..++....+.+.-.+.. +-+++...-.+++..++..|+..|.+++..+-+. +... .+-..++.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~---eEL~~f~FQkefLk 1185 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLER---EELANYNFQNEFMK 1185 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcch---hhhhchhHHHHHHH
Confidence 3344444444444444444333334 3344444334566778888888888888765432 1111 12235666
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCC--chh
Q 002697 483 GLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN--QPV 559 (891)
Q Consensus 483 ~l~~~l~-d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~--~~~ 559 (891)
.+...+. ..+..||+....++..++....+.+..=-+.|+..+..+...........+++++..+....=..+. .+.
T Consensus 1186 Pfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~ 1265 (1780)
T PLN03076 1186 PFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETT 1265 (1780)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchh
Confidence 6665555 3457899999999999998876666554456666666565555666677888888877653111110 012
Q ss_pred hhhhhhHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHhccc------------------------------cccc---hH
Q 002697 560 YLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAG------------------------------FTQF---AQ 605 (891)
Q Consensus 560 ~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~~------------------------------~~~~---~~ 605 (891)
.+..++..+.+--.+. .+.++ ..+++.+..++..+-+. +... ..
T Consensus 1266 ~F~DlV~cL~~Fa~q~--~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 1343 (1780)
T PLN03076 1266 TFTDCVNCLIAFTNSR--FNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLY 1343 (1780)
T ss_pred HHHHHHHHHHHHHhCc--CcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHH
Confidence 3333333332222221 12333 34555554443333100 0000 01
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHh-hhcc---chHHHHHHHHhc--------
Q 002697 606 PVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIES-LVAQ---SNLRDMLLQCCM-------- 673 (891)
Q Consensus 606 ~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~-~~~~---~~l~~~l~~~~~-------- 673 (891)
--++.+.. |..-. .+.+.++|.+|+..+=.+....|..|.+ ++.. .-++|++...-.
T Consensus 1344 lW~pLL~~-Ls~l~----------~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~ 1412 (1780)
T PLN03076 1344 FWFPLLAG-LSELS----------FDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGD 1412 (1780)
T ss_pred HHHHHHHH-HHHHh----------cCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 11222221 11111 1127789999999888888888988775 3322 235555432110
Q ss_pred ---------CCC--------hHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHH
Q 002697 674 ---------DDA--------SDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (891)
Q Consensus 674 ---------~~~--------~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~ 736 (891)
+.+ .+....|+..+.++...+-+.+.+.++.++..+..++..+ +....+..+.|+-.++
T Consensus 1413 ~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~----n~~la~ig~~~l~~li 1488 (1780)
T PLN03076 1413 EPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRP----HQSLAGIGIAAFVRLM 1488 (1780)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc----hHHHHHHHHHHHHHHH
Confidence 000 1223346666666666666777788999999999999887 6788888999999999
Q ss_pred Hhchhhhhh-HHHHHHHHHHHHhcC
Q 002697 737 VKARQEISP-IVMTVVLCLVPILKH 760 (891)
Q Consensus 737 ~~~~~~~~~-~~~~il~~l~~~l~~ 760 (891)
...+..|.+ .+..++..+..++..
T Consensus 1489 ~~ng~~F~~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1489 SNAGHLFSDEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHH
Confidence 888877654 466777666666654
No 151
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.35 E-value=0.23 Score=51.14 Aligned_cols=193 Identities=14% Similarity=0.171 Sum_probs=125.5
Q ss_pred HHhHhhhhhcCChHHHHHHHHHHHHHHhhccc-----------CchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhc-
Q 002697 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-----------AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI- 162 (891)
Q Consensus 95 ~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~-----------~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~- 162 (891)
...|+..|..-+-+.|+.++++.+.+.+.... .+||+++..|...-.+++...- +-.+|...++.-
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~--~g~mlRec~k~e~ 155 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN--CGDMLRECIKHES 155 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH--HHHHHHHHTTSHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch--HHHHHHHHHhhHH
Confidence 34455566666777888888888888776421 4568888888888877664332 222333333210
Q ss_pred -hh-ccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccc----hhhHHhHHHHHHHHHHhhCCCCHH
Q 002697 163 -PQ-VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP----SALFVSMDQYLQGLFLLSNDPSAE 236 (891)
Q Consensus 163 -~~-~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~ 236 (891)
.. .+. ...+-.++++.+.++-+|..-|+.++..+....+ +.+..+.+.++...-.++.+++--
T Consensus 156 l~~~iL~-----------~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 156 LAKIILY-----------SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp HHHHHHT-----------SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred HHHHHhC-----------cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 01 111 2234457788899999999999999999876533 335566778888888889889999
Q ss_pred HHHHHHHHHHHHHhhCh--hhhhHhHH--HHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHH
Q 002697 237 VRKLVCAAFNLLIEVRP--SFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (891)
Q Consensus 237 v~~~~~~~l~~l~~~~~--~~~~~~l~--~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 300 (891)
+|.++++.|+.+..... ..+..|+. +-+..++..+.+....++.+|+.++.-++..|..+..+.
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~ 292 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIV 292 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHH
Confidence 99999999999875433 34445543 456677788899999999999999988777754443333
No 152
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.48 Score=53.92 Aligned_cols=289 Identities=13% Similarity=0.095 Sum_probs=148.3
Q ss_pred HHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCC-CcchhhHHHHHHHHHHHhcC
Q 002697 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH-QNGREQFEKVLMGLLKRILD 490 (891)
Q Consensus 412 a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~l~d 490 (891)
.+..+|.+++-.++.+.+.+-..+-.++..+.++++.++..|-.|+-.++..+... ++ .......+-++..+-..++.
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~-s~~~lI~en~DYlv~sla~~L~~ 646 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYG-SPPHLIRENVDYLVNSLALRLNT 646 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCC-ChHHHHHhhhHHHHHHHHHHhcc
Confidence 34556677666666665555444444566678999999999999998888765321 00 00122223333333333331
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhh----hhh--
Q 002697 491 TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYL----DIL-- 564 (891)
Q Consensus 491 ~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~----~~l-- 564 (891)
..+..++-..+.-++........|++.++++.++..++.+....-...+..+-++.+.++..+.+...+ ++.
T Consensus 647 --~~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~ 724 (1014)
T KOG4524|consen 647 --SGMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHIS 724 (1014)
T ss_pred --CCCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHH
Confidence 112223333455555566667788999999999998887765432223333334444333222100000 000
Q ss_pred --------hHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHhc------------------------cccccchHHHHHHH
Q 002697 565 --------MPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALG------------------------AGFTQFAQPVFQRC 611 (891)
Q Consensus 565 --------~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~------------------------~~~~~~~~~i~~~l 611 (891)
.|.-...+.+.. .+. ......+-.-..+-| .+-.|-.+..+..+
T Consensus 725 ~~~k~l~e~p~~~~e~~n~~---~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~~~~qv~iv 801 (1014)
T KOG4524|consen 725 QSTKVLNELPTQVKELINDE---NDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPILPDQVKIV 801 (1014)
T ss_pred HHHHHhhcchhhHHHhhhhH---HHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCCCChHHHHH
Confidence 111000000000 000 000000000000000 01223333333433
Q ss_pred HHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHH---HHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHh
Q 002697 612 INIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGL---AEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLG 688 (891)
Q Consensus 612 ~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~ 688 (891)
.+++...... ...++..++..++++++.- .......+-|.+.+ ..|.+..++.++++-+.+.|+.++.
T Consensus 802 ~kIl~r~~~~-------LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq--~W~~vie~~~~k~~L~v~~a~~~i~ 872 (1014)
T KOG4524|consen 802 LKILGRGIHL-------LSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQ--TWPSVIECLLCKDPLIVQRAFSCIE 872 (1014)
T ss_pred HHHHHHHHHH-------hcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHh--hhhHHHHHHhcCchHHHHHHHHHHH
Confidence 3333322110 0111445666777777663 33444457777777 8888889999999999999999999
Q ss_pred HHHHhchHhhH-HhHHHHHHHHHHhcCC
Q 002697 689 DLARVCPVHLQ-ARLSDFLDIAAKQLNT 715 (891)
Q Consensus 689 ~l~~~~~~~~~-~~~~~i~~~l~~~l~~ 715 (891)
.+...+|+-+. .++..++|.+...+++
T Consensus 873 ~m~~~sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 873 QMGKYSGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999886543 4566666666654443
No 153
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.32 E-value=0.0069 Score=55.62 Aligned_cols=140 Identities=23% Similarity=0.252 Sum_probs=106.1
Q ss_pred chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcc-hhhhhhhHHHHHHHHhhhcCCCC-hHHHHHHHHHHHhhHH
Q 002697 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLDDKF-PLIRSISCWTLSRFSK 462 (891)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~-~~~~~~~l~~i~~~l~~~l~d~~-~~vr~~a~~~l~~~~~ 462 (891)
..++.+...+...+++.+ +..|..|+..++.+.+.+ .+.+..+...-+..+++.++.++ +.++..++.+++.+..
T Consensus 21 ~~l~~l~~ri~~LL~s~~---~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKS---AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHhCCCC---hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 345667777888888888 999999999999999988 56665666667777777776654 4788999999999988
Q ss_pred HHhhhh--CCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHH
Q 002697 463 FIVQDI--GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAF 529 (891)
Q Consensus 463 ~~~~~~--~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l 529 (891)
...+.- ..+...+.+..+++.+++.+++ ..+...++.+|..++...+..+.||...+-..+...+
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 765431 0112345567777777777765 5678889999999999999999999888876666544
No 154
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.32 E-value=0.11 Score=65.22 Aligned_cols=338 Identities=15% Similarity=0.184 Sum_probs=175.9
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcC-CCHHHHHHHHHHH
Q 002697 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSV 204 (891)
Q Consensus 126 ~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l 204 (891)
...|.-+-+.+.....+.+..++.-|+..|..++-.+.+. .+..+ ....+.++..|...+.+ .+.++|...++|+
T Consensus 1132 ~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~--eEL~~--f~FQkefLkPfe~im~~s~~~eVrE~ILeCv 1207 (1780)
T PLN03076 1132 SSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLER--EELAN--YNFQNEFMKPFVIVMRKSNAVEIRELIIRCV 1207 (1780)
T ss_pred HhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcch--hhhhc--hhHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 3444445555555555556777788888887777655432 11111 02234566666665554 5789999999999
Q ss_pred HHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhh----HhHHHHHHHHHhhcCC-CCHHHH
Q 002697 205 NQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE----PHLRNLFEYMLQVNKD-TDDDVA 279 (891)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~----~~l~~l~~~~~~~~~~-~~~~v~ 279 (891)
..++......+..-=..++..+-....+.++.+-..+++.+..+...+-..+. ..+..++..+...... .+.++.
T Consensus 1208 ~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nIS 1287 (1780)
T PLN03076 1208 SQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDIS 1287 (1780)
T ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCccccc
Confidence 99987644433322233444444445567788888899988877654333221 3445555555544332 346677
Q ss_pred HHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccC-C-CCCCCCCCC---ccccc-ccCCCCCC
Q 002697 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDE-S-LPDRDQDLK---PRFHS-SRLHGSEN 353 (891)
Q Consensus 280 ~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~-~-~~~~~~~i~---~~~~~-~~~~~~~~ 353 (891)
..|++++..++.. . ....+...... ..............+..++ . ..+.....+ |.+.. ..... |
T Consensus 1288 L~AI~lL~~~~~~--L---a~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~-D- 1358 (1780)
T PLN03076 1288 LNAIAFLRFCATK--L---AEGDLGSSSRN--KDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSF-D- 1358 (1780)
T ss_pred HHHHHHHHHHHHH--H---Hhccccccccc--cccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhc-C-
Confidence 7888877655332 0 00000000000 0000000000000000000 0 000000000 00000 00000 0
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHcCcch--------hh-hhHHHHHHhh---cc-C----------------CCc
Q 002697 354 PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI--------LP-TLMPVIQAKL---SA-S----------------GDE 404 (891)
Q Consensus 354 ~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~--------~~-~l~~~l~~~l---~~-~----------------~~~ 404 (891)
+ .-.+|..|..+|-.+....|..+ +. .++|++...- .. . +..
T Consensus 1359 ---~------RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~ 1429 (1780)
T PLN03076 1359 ---P------RPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQD 1429 (1780)
T ss_pred ---C------cHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhh
Confidence 1 11389999998887777776532 22 3444443211 00 0 001
Q ss_pred chHHHHHHHHHHHHHhhcchh---hhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHH
Q 002697 405 AWKDREAAVLALGAIAEGCIK---GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (891)
Q Consensus 405 ~~~~r~aa~~~l~~l~~~~~~---~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l 481 (891)
.|. .+....+|..+++-+.. .+...++.++..+..++..++..+-..++.|+.++....... ...+....++
T Consensus 1430 ~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~----F~~~~W~~i~ 1504 (1780)
T PLN03076 1430 AWL-YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL----FSDEKWLEVV 1504 (1780)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc----CCHHHHHHHH
Confidence 143 55666666666654443 445678888888888899999999999999999988765432 3556666666
Q ss_pred HHHHHHhcC
Q 002697 482 MGLLKRILD 490 (891)
Q Consensus 482 ~~l~~~l~d 490 (891)
..+.+.+..
T Consensus 1505 ~~~~~lf~~ 1513 (1780)
T PLN03076 1505 LSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHH
Confidence 666665553
No 155
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.4 Score=51.96 Aligned_cols=146 Identities=14% Similarity=0.207 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhH
Q 002697 13 GFNEICRLLEQQI-SPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (891)
Q Consensus 13 ~~~~l~~~l~~~~-s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~ 91 (891)
.+.++..+.++.. |.|+. .|-+||+.|.++..+|+++..+-.++.. +..+-...+|+..|-+.+.++- .++-+.|
T Consensus 3 sLaqLe~lCk~LY~s~D~~-~R~~AE~~L~e~s~speclskCqlll~~--gs~pYs~mlAst~L~Klvs~~t-~lpl~qr 78 (1082)
T KOG1410|consen 3 SLAQLESLCKDLYESTDPT-ARHRAEKALAELSESPECLSKCQLLLER--GSYPYSQMLASTCLMKLVSRKT-PLPLEQR 78 (1082)
T ss_pred cHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHccCHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHcCCC-CCcHHHH
Confidence 4567777777776 46777 9999999999999999999877777765 4566778889999988887764 6888999
Q ss_pred HHHHHhHhhhhhc--C--ChHHHHHHHHHHHHHHhhcccC------chHHHHHHHHHHhccCChhHHhHHHHHHHHHHhh
Q 002697 92 QYIKSELLPCLGA--A--DRHIRSTVGTIVSVVVQLGGIA------GWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (891)
Q Consensus 92 ~~i~~~ll~~L~~--~--~~~vr~~~a~~l~~i~~~~~~~------~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~ 161 (891)
-.|++-++..+.. | .+.|-.++.++++.+.+..|.. .+.+.+..+.+.++.++.+.-..++.+|..++.+
T Consensus 79 ldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqe 158 (1082)
T KOG1410|consen 79 LDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQE 158 (1082)
T ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHH
Confidence 9999999999875 2 4567888888888888765421 2344555555555555554445555555555544
Q ss_pred c
Q 002697 162 I 162 (891)
Q Consensus 162 ~ 162 (891)
+
T Consensus 159 m 159 (1082)
T KOG1410|consen 159 M 159 (1082)
T ss_pred h
Confidence 3
No 156
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.24 E-value=0.0094 Score=58.66 Aligned_cols=184 Identities=15% Similarity=0.188 Sum_probs=122.6
Q ss_pred HhHhhhhh-cCChHHHHHHHHHHHHHHhhcc-cCchHH--HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCC
Q 002697 96 SELLPCLG-AADRHIRSTVGTIVSVVVQLGG-IAGWLE--LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (891)
Q Consensus 96 ~~ll~~L~-~~~~~vr~~~a~~l~~i~~~~~-~~~w~~--ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (891)
+.++..|. ..++.++..+..+++..+.... .+.+.+ .++.+...+.++++.+|..|+.++..+.......
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~------ 88 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ------ 88 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH------
Confidence 45677777 4688999998888888765431 233333 4788899999999999999999998776543321
Q ss_pred CCCCcchhhhHHHHHHhhcC-C-CHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002697 172 GLAECPINIFLPRLLQFFQS-P-HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (891)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~-~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~ 249 (891)
..+...++.+++...+ + +..++.+++++|..+.-. +.....+...++.++.++..++..++..++++|..+.
T Consensus 89 ----~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 89 ----EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred ----HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 2234556666664433 3 778999999999998532 2233344556777888888888999999999999887
Q ss_pred hhChhhhhHhHH-HHHHHHHhhcCC-CCHHHHHHHHHHHHHhhcc
Q 002697 250 EVRPSFLEPHLR-NLFEYMLQVNKD-TDDDVALEACEFWHSYFEA 292 (891)
Q Consensus 250 ~~~~~~~~~~l~-~l~~~~~~~~~~-~~~~v~~~a~~~l~~l~~~ 292 (891)
+. |......+. +....++..+.. .+.++...++.++..+.+.
T Consensus 163 ~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 EN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 64 332222221 333344444443 3566777777777766554
No 157
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.21 E-value=0.92 Score=54.86 Aligned_cols=331 Identities=12% Similarity=0.049 Sum_probs=173.2
Q ss_pred CCCHHHHHHHHHHHHHhHHhhhccCC--hhhHHHHHHhHhh---hhhcC-ChHHHHHHHHHHHHHHhh-------c--cc
Q 002697 62 GKSVEIRQAAGLLLKNNLRTAYKSMS--PSNQQYIKSELLP---CLGAA-DRHIRSTVGTIVSVVVQL-------G--GI 126 (891)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~~~--~~~~~~i~~~ll~---~L~~~-~~~vr~~~a~~l~~i~~~-------~--~~ 126 (891)
..|..+|.+-+.++-..++-.-+..| .+....|-..++. +|.+. ++...+ -..++-++++. + ..
T Consensus 61 h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r-~~~lletl~~~k~~l~~~l~d~~ 139 (1266)
T KOG1525|consen 61 HKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKR-YFYLLETLAKVKFCLLMLLEDCQ 139 (1266)
T ss_pred CCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhh-HHHHHHHHHHhHHHheeeccchH
Confidence 56788999999999888776555433 2333444444444 44553 222211 12233333322 1 12
Q ss_pred CchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHH
Q 002697 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (891)
Q Consensus 127 ~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~ 206 (891)
+-.++++..+...++.+.+.....-..++..+...... .-..++..++.-|-.+..+....|...-..
T Consensus 140 e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~------------v~~e~L~~ll~~lv~~~~~~~~~a~~la~~ 207 (1266)
T KOG1525|consen 140 ELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDT------------VQSELLDVLLENLVKPGRDTIKEADKLASD 207 (1266)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHhccCCCCccHHHHHHHHH
Confidence 34456666666666666555444444444444443221 124455555544444434444444444444
Q ss_pred HhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 002697 207 FIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (891)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l 286 (891)
++...++.+...+..++...+..-...-...+....+.+..+....|..+. .+++.+..-+...++++|..|...+
T Consensus 208 li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~----~vip~l~~eL~se~~~~Rl~a~~lv 283 (1266)
T KOG1525|consen 208 LIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLL----AVIPQLEFELLSEQEEVRLKAVKLV 283 (1266)
T ss_pred HHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhcchHHHHHHHHHHH
Confidence 444444444455555555544433222234555666777777666665543 4666666666777888999999998
Q ss_pred HHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccccc
Q 002697 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (891)
Q Consensus 287 ~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~ 366 (891)
+.+...+... +..-.+.+....+..+... .-.
T Consensus 284 g~~~~~~~~~--l~~~~~~~~~~fl~r~~D~----------------------------------------------~~~ 315 (1266)
T KOG1525|consen 284 GRMFSDKDSQ--LSETYDDLWSAFLGRFNDI----------------------------------------------SVE 315 (1266)
T ss_pred HHHHhcchhh--hcccchHHHHHHHHHhccC----------------------------------------------Chh
Confidence 8876552211 1111222222222222210 013
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCC
Q 002697 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 446 (891)
+|..+.+....+....+.. .......+.-...+.| +.+|.....+++.+.. .+.--.+.+.++..+...+.|..
T Consensus 316 vR~~~v~~~~~~l~~~~~~-~~~~~~~~~l~~~~~D---~~~rir~~v~i~~~~v--~~~~l~~~~~ll~~~~eR~rDKk 389 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPSI-AKASTILLALRERDLD---EDVRVRTQVVIVACDV--MKFKLVYIPLLLKLVAERLRDKK 389 (1266)
T ss_pred hhhhHHHHhHHHHhcCchh-hhHHHHHHHHHhhcCC---hhhhheeeEEEEEeeh--hHhhhhhhHHHHHHHHHHHhhhh
Confidence 6877777766555443321 1111111111222344 5555554443332211 12222444557888888999999
Q ss_pred hHHHHHHHHHHHhhHHH
Q 002697 447 PLIRSISCWTLSRFSKF 463 (891)
Q Consensus 447 ~~vr~~a~~~l~~~~~~ 463 (891)
+.||..|+..+.++.+.
T Consensus 390 ~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 390 IKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999885
No 158
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.21 E-value=0.0068 Score=55.13 Aligned_cols=146 Identities=15% Similarity=0.155 Sum_probs=94.6
Q ss_pred hhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC-----CCChHHHHHHHHHHHhhH
Q 002697 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFS 461 (891)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~~~ 461 (891)
.|.+++.+...++.+.+ |..|..++.++|.+..- .|+.-+ .+..... +.+...........+
T Consensus 8 yP~LL~~L~~iLk~e~s--~~iR~E~lr~lGilGAL-----DP~~~k---~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 74 (160)
T PF11865_consen 8 YPELLDILLNILKTEQS--QSIRREALRVLGILGAL-----DPYKHK---SIQKSLDSKSSENSNDESTDISLPMMG--- 74 (160)
T ss_pred hHHHHHHHHHHHHhCCC--HHHHHHHHHHhhhcccc-----CcHHHh---cccccCCccccccccccchhhHHhhcc---
Confidence 57788888888876533 99999999999998752 122111 1111111 111122222111111
Q ss_pred HHHhhhhCCCcchhhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHH
Q 002697 462 KFIVQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIV 540 (891)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~ 540 (891)
. .+...+-|..-++..+++.++|++ ..-+..+..|+..+++..+....||++.++|.+++.+.+.....++..
T Consensus 75 --~----~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~ 148 (160)
T PF11865_consen 75 --I----SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFY 148 (160)
T ss_pred --C----CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHH
Confidence 1 011123344567888888898876 344667899999999888877899999999999999998777666677
Q ss_pred HHHHHHHHHHh
Q 002697 541 YDAIGTLADAV 551 (891)
Q Consensus 541 ~~al~~l~~~~ 551 (891)
+.-++.++..+
T Consensus 149 ~~qL~~lv~iv 159 (160)
T PF11865_consen 149 FQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHh
Confidence 77777776543
No 159
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.059 Score=54.17 Aligned_cols=186 Identities=18% Similarity=0.124 Sum_probs=112.4
Q ss_pred chhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHH-HHHHHHHH
Q 002697 633 DKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS-DFLDIAAK 711 (891)
Q Consensus 633 d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~ 711 (891)
+.+-+..+++-+..+++.+... .++.+-..+.+++. .+++.+..+|..|..++|.++++.|..-...++ ..++.+++
T Consensus 96 ~le~ke~ald~Le~lve~iDnA-ndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNA-NDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhH-HhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 4445566777777777766543 23333223444444 889999999999999999999998843222222 36666777
Q ss_pred hcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhH--HHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCc
Q 002697 712 QLNTPKLKETVSVANNACWAIGELAVKARQEISPI--VMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSP 789 (891)
Q Consensus 712 ~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~--~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 789 (891)
.+..+. +..+|.+|.+|++.++++.......+ +.. ...|.+++.++.. ....+..++..++.++...+..-.-
T Consensus 174 ~ls~~~---~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~-~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 174 ILSSDD---PNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNT-SVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHccCC---CchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCc-chHHHHHHHHHHHHHHHhhhhhhhH
Confidence 776554 56899999999999998876443222 112 4456677776531 2345555677777777644322110
Q ss_pred chhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhC
Q 002697 790 HMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKAN 825 (891)
Q Consensus 790 ~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~ 825 (891)
.-...++..+..+....+.+-+..+..+++.++..-
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 112223333333333344455667777777776653
No 160
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.011 Score=64.04 Aligned_cols=172 Identities=18% Similarity=0.159 Sum_probs=116.5
Q ss_pred HHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHH
Q 002697 40 LQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSV 119 (891)
Q Consensus 40 L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~ 119 (891)
|-.|....++-+++-+++. +.++-.|..+...+- +...-. ..-..||..|--..+|.+..||+.+..+++-
T Consensus 511 L~~ygrqe~Ad~lI~el~~---dkdpilR~~Gm~t~a--lAy~GT----gnnkair~lLh~aVsD~nDDVrRaAVialGF 581 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLR---DKDPILRYGGMYTLA--LAYVGT----GNNKAIRRLLHVAVSDVNDDVRRAAVIALGF 581 (929)
T ss_pred HHHhhhhhhhHHHHHHHhc---CCchhhhhhhHHHHH--HHHhcc----CchhhHHHhhcccccccchHHHHHHHHHhee
Confidence 4455566667666666665 458888876654332 211111 1113444444446789999999998888887
Q ss_pred HHhhcccCchHHHHHHHHHHhc-cCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHH
Q 002697 120 VVQLGGIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRK 198 (891)
Q Consensus 120 i~~~~~~~~w~~ll~~L~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~ 198 (891)
++-.+ |+.++...+.+. +-|+.+|.++..+|+..|..-+. ..-+..+-....|+..-||+
T Consensus 582 Vl~~d-----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~--------------~eAi~lLepl~~D~~~fVRQ 642 (929)
T KOG2062|consen 582 VLFRD-----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL--------------KEAINLLEPLTSDPVDFVRQ 642 (929)
T ss_pred eEecC-----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc--------------HHHHHHHhhhhcChHHHHHH
Confidence 76654 555566666555 44899999999999988875443 33455555666788889999
Q ss_pred HHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHH
Q 002697 199 LSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRK 239 (891)
Q Consensus 199 ~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~ 239 (891)
.|+-++.-++....+...+....|.+.+.+.+++..++...
T Consensus 643 gAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~a 683 (929)
T KOG2062|consen 643 GALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMA 683 (929)
T ss_pred HHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHH
Confidence 99999998887777777777777777777777776655433
No 161
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.19 E-value=0.57 Score=52.04 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhc----CCCh---HHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChh
Q 002697 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ----FPDF---NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (891)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~~----~p~~---~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~ 89 (891)
+.-+|....|++.. +|+.+.+-|+.+.+ +|+. +..|+..+.+. +.+.-+|+++.++++..+ +.++.+
T Consensus 25 L~plLlkl~S~~~~-VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~-~~s~~vrnfsliyi~~g~----~Rl~~~ 98 (501)
T PF13001_consen 25 LPPLLLKLASPHAS-VRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEP-SDSSFVRNFSLIYIEMGF----DRLDDE 98 (501)
T ss_pred HHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCC-CCchHHHHHHHHHHHHhh----hcCCHH
Confidence 34466666788888 99999999987643 4664 45677777643 457899999999886554 458999
Q ss_pred hHHHHHHhHhhhhhc
Q 002697 90 NQQYIKSELLPCLGA 104 (891)
Q Consensus 90 ~~~~i~~~ll~~L~~ 104 (891)
.+..+...+++++..
T Consensus 99 e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 99 ERRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999999874
No 162
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.06 E-value=0.027 Score=51.79 Aligned_cols=130 Identities=18% Similarity=0.161 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhHHHHhch-HhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhch--
Q 002697 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-- 740 (891)
Q Consensus 664 l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-- 740 (891)
+..-+...+++.++.-|-.++.+++.++..++ +.+..+....+..+.+.++.++ ...+++.|+.++..+.....
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~---~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD---PPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHHhcCC
Confidence 44456667788889999999999999999985 5565666777777777777754 66889999999999987654
Q ss_pred -----hhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhh
Q 002697 741 -----QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIA 801 (891)
Q Consensus 741 -----~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 801 (891)
+...|.++.+++.+++++.+ ....+.+..++..++..+|..+.|+..++-..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~-----~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD-----SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 22578899999999988764 245577899999999999999999887766655543
No 163
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.04 E-value=0.61 Score=49.60 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=77.4
Q ss_pred HhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCC-CHHHHHHHHHHHHHHhcccchh-hH
Q 002697 139 CLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSA-LF 216 (891)
Q Consensus 139 ~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~-~~ 216 (891)
.++.++.-+...++.+|..++..-..... ....+.+++.+...+..+ +...+..|+.|+..++..-+-. ..
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~~~~~~-------~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f 181 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFGLAKME-------GSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF 181 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcCccccc-------hhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence 45567778889999999888764322111 122344555666666654 3566777888988887543211 11
Q ss_pred HhHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhChhhhhHhH--HHHHHHHHhhcCC-CCHHHHHHHHHHHHHhhc
Q 002697 217 VSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPHL--RNLFEYMLQVNKD-TDDDVALEACEFWHSYFE 291 (891)
Q Consensus 217 ~~~~~~l~~l~~~~~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~l~~~~~~~~~~-~~~~v~~~a~~~l~~l~~ 291 (891)
...+ .++.+...+... +.+..-.++-|+-.+ ...++ ....+ ..+++.+.+.++. ..+.+.+.++..+..+..
T Consensus 182 ~~~~-~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL-SF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 182 VLAD-GVPTLVKLLSNATLGFQLQYQSIFCIWLL-TFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHcc-CHHHHHHHHhhccccHHHHHHHHHHHHHH-hccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 1111 345555544322 223333333333222 12222 11222 3566666666554 356677888888888877
Q ss_pred c
Q 002697 292 A 292 (891)
Q Consensus 292 ~ 292 (891)
.
T Consensus 259 ~ 259 (429)
T cd00256 259 K 259 (429)
T ss_pred c
Confidence 5
No 164
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.03 E-value=0.0074 Score=55.49 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHhhc-chhhhhhhHHHHHHHH------------hhhcCCCChHHHHHHHHHHHhhHHHHhhhhC----
Q 002697 407 KDREAAVLALGAIAEG-CIKGLYPHLSEIVAFL------------IPLLDDKFPLIRSISCWTLSRFSKFIVQDIG---- 469 (891)
Q Consensus 407 ~~r~aa~~~l~~l~~~-~~~~~~~~l~~i~~~l------------~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---- 469 (891)
++|.+|+.++..++.. -++.+..|++.++|.- ...+.||++.+|.+|+.++..+.+....++.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4799999999999988 4455666766666643 3345799999999999999998876443210
Q ss_pred CC----c-------chhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhc-ccc-hHhHHHHHHHHHHHHcccchh
Q 002697 470 HQ----N-------GREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAA-EEL-APRLEIILQHLMMAFGKYQRR 535 (891)
Q Consensus 470 ~~----~-------~~~~~~~~l~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~-~~~-~~~l~~il~~l~~~l~~~~~~ 535 (891)
.. . ....+.++-..++..+.. .+..+....++++..++.+.+ +.+ ..+++.++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 00 0 122334444445555553 457788889999999998863 333 347788888888888887777
Q ss_pred HHHHHHHHHHHHHHHh
Q 002697 536 NLRIVYDAIGTLADAV 551 (891)
Q Consensus 536 ~~~~~~~al~~l~~~~ 551 (891)
++..++-+++.+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7778888888877653
No 165
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.7 Score=49.45 Aligned_cols=181 Identities=15% Similarity=0.189 Sum_probs=100.1
Q ss_pred hhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhc--CCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHH
Q 002697 634 KEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM--DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAK 711 (891)
Q Consensus 634 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 711 (891)
.++|..+.+++..++-.+|++- -+..+...++ ..+++.-++++..+..++++.+..=.+-++.++..+.+
T Consensus 366 ~~fR~~v~dvl~Dv~~iigs~e--------~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~n 437 (559)
T KOG2081|consen 366 FEFRLKVGDVLKDVAFIIGSDE--------CLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICN 437 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcHH--------HHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhC
Confidence 3667777788877777777642 2223333332 45788999999999999988764444555555555443
Q ss_pred hcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcch
Q 002697 712 QLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHM 791 (891)
Q Consensus 712 ~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 791 (891)
.-. ...+|..++..+|.+......+ ..+++.+++-+..-+.. ....-.++.++.++...+.....++.
T Consensus 438 lp~------Q~~~~~ts~ll~g~~~ew~~~~-p~~le~v~~~~~~~~~~-----~~~as~~a~~~~~i~~~c~~~~~~l~ 505 (559)
T KOG2081|consen 438 LPE------QAPLRYTSILLLGEYSEWVEQH-PELLEPVLRYIRQGLQL-----KRLASAAALAFHRICSACRVQMTCLI 505 (559)
T ss_pred Ccc------chhHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHhhh-----cchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 311 3369999999999998766533 01222222222222211 12334455566666665554443333
Q ss_pred h---HHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChh-hhHhhHHHHhh
Q 002697 792 E---HFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPS-GALSSLVFMCR 838 (891)
Q Consensus 792 ~---~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~-~~~~~l~~~~~ 838 (891)
+ .++..+...+. .+|-...++|+..++...|. .+...+..+|+
T Consensus 506 ~~~~~l~~~l~~~~~----~~e~a~l~~~~s~i~~~lp~~k~~~~~~el~~ 552 (559)
T KOG2081|consen 506 PSLLELIRSLDSTQI----NEEAACLLQGISLIISNLPAHKAKIALEELCE 552 (559)
T ss_pred HHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHhcCCHhhhhHHHHHHhh
Confidence 3 33333333332 24555577777777776663 23344444443
No 166
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.93 E-value=0.019 Score=52.30 Aligned_cols=89 Identities=15% Similarity=0.083 Sum_probs=75.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHhHHHHh-chHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHH---HHh
Q 002697 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARV-CPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGEL---AVK 738 (891)
Q Consensus 663 ~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l---~~~ 738 (891)
.++|++...++.....-+-.|...+.++... .++.+.|.+++++..+.+.|... +.+|..++..+|-.+ ...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr----~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR----DPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHhhhh
Confidence 3777888888777777777888889999998 67889999999999999999998 789999999999999 445
Q ss_pred chhhhhhHHHHHHHHHH
Q 002697 739 ARQEISPIVMTVVLCLV 755 (891)
Q Consensus 739 ~~~~~~~~~~~il~~l~ 755 (891)
.|+.+.||+.++++.+.
T Consensus 114 vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLN 130 (183)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 57889999999987665
No 167
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.048 Score=58.92 Aligned_cols=204 Identities=17% Similarity=0.183 Sum_probs=128.8
Q ss_pred hhhccCChhhHHHHHHhHhhhhh-----cCChHHHHHHHHHHHHHHhhc-ccCchHHHH-----HHHHHHhccCChhHHh
Q 002697 81 TAYKSMSPSNQQYIKSELLPCLG-----AADRHIRSTVGTIVSVVVQLG-GIAGWLELL-----QALVTCLDSNDINHME 149 (891)
Q Consensus 81 ~~w~~~~~~~~~~i~~~ll~~L~-----~~~~~vr~~~a~~l~~i~~~~-~~~~w~~ll-----~~L~~~l~~~~~~~r~ 149 (891)
+.|+..+-+....|-+-.++.+. .+.+.+....-.+++.++... ....-.+++ |-|...++.+|..+|.
T Consensus 113 rAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~Vrs 192 (1005)
T KOG1949|consen 113 RAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRS 192 (1005)
T ss_pred HHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhh
Confidence 46887776777777777776542 233444455555666665432 233444444 5677778888999999
Q ss_pred HHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHh----cccchhhHHhHHHHHHH
Q 002697 150 GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI----MLMPSALFVSMDQYLQG 225 (891)
Q Consensus 150 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~----~~~~~~~~~~~~~~l~~ 225 (891)
.|+..+-...--..+.... +...+.+..=+..+..+|.++-|.||..|+.-+.... +.+|+.... .++..
T Consensus 193 nAa~lf~~~fP~~dpd~~~---e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~---~ll~k 266 (1005)
T KOG1949|consen 193 NAALLFVEAFPIRDPDLHA---EEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILI---DLLKK 266 (1005)
T ss_pred hHHHHHHHhccCCCCCccH---HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHH---HHHHH
Confidence 9988875543322221100 0001223344556888899999999998876665544 345544322 23444
Q ss_pred HHH-hhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 002697 226 LFL-LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (891)
Q Consensus 226 l~~-~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (891)
++. +..|+..+||..++++|..++..--.+ +.++.+++.+-..+.|..+.||..+.+.+..+-.+
T Consensus 267 I~d~~a~dt~s~VR~svf~gl~~~l~np~sh--~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 267 ITDELAFDTSSDVRCSVFKGLPMILDNPLSH--PLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHhhhccchheehhHhcCcHHHHcCccch--hHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 444 344667799999999999888643333 56677788777778899999998888877766443
No 168
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.13 Score=58.64 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhcCC-CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHH
Q 002697 406 WKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 483 (891)
.+.|--|+++|+.+..++.-.-+..+ ..++...+..++| ++|.+|.=.|-|||++.+.+...- -...-...-..
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Ar----w~G~r~~Ahek 646 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEAR----WSGRRDNAHEK 646 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhh----hccccccHHHH
Confidence 57888899999999988764333333 3467777888888 589999999999999988765421 11111233445
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 002697 484 LLKRILDTNKRVQEAACSAFATLEEEA 510 (891)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (891)
++..+.|+.++||.+|..||+.|+...
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 667788999999999999999999864
No 169
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=0.21 Score=54.48 Aligned_cols=208 Identities=17% Similarity=0.126 Sum_probs=131.0
Q ss_pred ChHH-HHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhccc
Q 002697 48 DFNN-YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126 (891)
Q Consensus 48 ~~~~-~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~ 126 (891)
++.. .+-+++...++.+-.+|.-....|..... .-..+++...+.+...++..+.|..+.||.++..+++.+-.....
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 4543 55567776678888999999888865554 445688899999999999999999999999988888876643322
Q ss_pred CchHHHHHHHHHHhc-cCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 002697 127 AGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (891)
Q Consensus 127 ~~w~~ll~~L~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~ 205 (891)
.. -.+...+..+++ ++++.+|.+++..+.. + +.-.|.++.-..|.+..+|+.+..-+.
T Consensus 160 ee-~~v~n~l~~liqnDpS~EVRRaaLsnI~v-----------d---------nsTlp~IveRarDV~~anRrlvY~r~l 218 (892)
T KOG2025|consen 160 EE-CPVVNLLKDLIQNDPSDEVRRAALSNISV-----------D---------NSTLPCIVERARDVSGANRRLVYERCL 218 (892)
T ss_pred Cc-ccHHHHHHHHHhcCCcHHHHHHHHHhhcc-----------C---------cccchhHHHHhhhhhHHHHHHHHHHhh
Confidence 22 234455555554 5789999999887721 1 345788888888888777776654322
Q ss_pred HHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHH
Q 002697 206 QFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL-LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACE 284 (891)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~-l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~ 284 (891)
.-+... .-.+...+..+-..++|.+..++.++...+.. +.+... ..+++.+-+.-.+...+++..+++
T Consensus 219 pkid~r----~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d-------gni~ElL~~ldvsnss~vavk~le 287 (892)
T KOG2025|consen 219 PKIDLR----SLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSD-------GNILELLERLDVSNSSEVAVKALE 287 (892)
T ss_pred hhhhhh----hhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc-------ccHHHHHHHhccccchHHHHHHHH
Confidence 222211 11223445556666778888888777766632 221111 123333333333334456666666
Q ss_pred HHHH
Q 002697 285 FWHS 288 (891)
Q Consensus 285 ~l~~ 288 (891)
.+..
T Consensus 288 alf~ 291 (892)
T KOG2025|consen 288 ALFS 291 (892)
T ss_pred HHHH
Confidence 6555
No 170
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.65 E-value=0.0038 Score=38.47 Aligned_cols=31 Identities=42% Similarity=0.616 Sum_probs=26.6
Q ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcc
Q 002697 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (891)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~ 423 (891)
++|.+.+.++|++ |++|.+|+.++|.+++.+
T Consensus 1 llp~l~~~l~D~~---~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPS---PEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SS---HHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCC---HHHHHHHHHHHHHHHhhC
Confidence 4788889999998 999999999999998754
No 171
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.60 E-value=0.043 Score=45.91 Aligned_cols=79 Identities=11% Similarity=0.255 Sum_probs=68.2
Q ss_pred CChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhch-hhhhhHHHHHHHH
Q 002697 675 DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLC 753 (891)
Q Consensus 675 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-~~~~~~~~~il~~ 753 (891)
.+...|..++..++.+++.+++.+.++.++++..+...+..+ +++..|+.+...++...+ +++.|.+++++..
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~------~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~ 100 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP------ELREEALSCWNCFIKTLDEEDLGPLLDQIFAI 100 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh------hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 566788999999999999888999999999999998888765 789999999999999886 5688999998888
Q ss_pred HHHHhc
Q 002697 754 LVPILK 759 (891)
Q Consensus 754 l~~~l~ 759 (891)
+++.+.
T Consensus 101 l~~~~~ 106 (107)
T PF08064_consen 101 LLPLWD 106 (107)
T ss_pred HHHhcc
Confidence 877653
No 172
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.54 E-value=0.051 Score=50.09 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHhh-cc---cCchHHHHHHH------------HHHhccCChhHHhHHHHHHHHHHhhchhcccc---
Q 002697 108 HIRSTVGTIVSVVVQL-GG---IAGWLELLQAL------------VTCLDSNDINHMEGAMDALSKICEDIPQVLDS--- 168 (891)
Q Consensus 108 ~vr~~~a~~l~~i~~~-~~---~~~w~~ll~~L------------~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~--- 168 (891)
.||..+..++..+++. ++ .++|+.++|.- .-.+.|+++.+|.+|+.++..+.+.....+..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3789999999999998 43 47999998753 33456788999999999999999886654321
Q ss_pred -C-CCCCCC-------cchhhhHHHHHHhhcCC-CHHHHHHHHHHHHHHhcccchh-h-HHhHHHHHHHHHHhhCCCCHH
Q 002697 169 -D-VPGLAE-------CPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSA-L-FVSMDQYLQGLFLLSNDPSAE 236 (891)
Q Consensus 169 -~-~~~~~~-------~~~~~l~~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~-~-~~~~~~~l~~l~~~~~~~~~~ 236 (891)
+ ...-|. ..+.++-..++..++.+ +..+....++|+..++..-|-+ + ...+..++..+...+.+.+.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1 111221 11233334455556554 7788889999999998765521 1 233456677777777778889
Q ss_pred HHHHHHHHHHHHHhhCh
Q 002697 237 VRKLVCAAFNLLIEVRP 253 (891)
Q Consensus 237 v~~~~~~~l~~l~~~~~ 253 (891)
++..++.+++.+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999988876543
No 173
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.53 E-value=1.5 Score=47.01 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=102.4
Q ss_pred cCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHH
Q 002697 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (891)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (891)
.....-|+.++.+............+-.++..++.+=+++...-| .+..+..++++ .+..+ ++. ++....++-
T Consensus 22 ~s~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dR--il~fl~~f~~Y---~~~~d-peg-~~~V~~~~~ 94 (885)
T COG5218 22 QSSAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDR--ILSFLKRFFEY---DMPDD-PEG-EELVAGTFY 94 (885)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHH--HHHHHHHHHHh---cCCCC-hhh-hHHHHHHHH
Confidence 345556777666665554443333335566666665555443223 33444444442 11111 111 345677778
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHH
Q 002697 184 RLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (891)
Q Consensus 184 ~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l 263 (891)
.++.++.+++..||..+++.+..++....+--...++.++..+...+-|.++.||..|..+|..+-+..... . ..+
T Consensus 95 h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-e---n~~ 170 (885)
T COG5218 95 HLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-E---NRI 170 (885)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-H---HHH
Confidence 888888999999999999999998876554333334455666666666888999999999998887543221 1 112
Q ss_pred HHHHHhh-cCCCCHHHHHHHHHH
Q 002697 264 FEYMLQV-NKDTDDDVALEACEF 285 (891)
Q Consensus 264 ~~~~~~~-~~~~~~~v~~~a~~~ 285 (891)
...+... -.|+..+||+.|+--
T Consensus 171 ~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 171 VNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH
Confidence 2222222 247788899887643
No 174
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.52 E-value=0.27 Score=50.58 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=98.9
Q ss_pred hHHHHHHH-HhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002697 430 HLSEIVAF-LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (891)
Q Consensus 430 ~l~~i~~~-l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (891)
.+..++.. +.+.+.++++.||..|..|+|-++-.- .+...+.++.+.+.+...+..|+..|+.++..++-
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld---------~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~ 93 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLD---------KELAKEHLPLFLQALQKDDEEVKITALKALFDLLL 93 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC---------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34466654 558999999999999999999887642 34445666667777765689999999999999887
Q ss_pred Hhcccc-h--------HhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCC
Q 002697 509 EAAEEL-A--------PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSD 579 (891)
Q Consensus 509 ~~~~~~-~--------~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 579 (891)
..+... . .....++..+.+.+.+.+...+..+.+.+..+.-.-. +.. .+.++..|+-.|-+....+
T Consensus 94 ~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~--i~~---~~~vL~~Lll~yF~p~t~~ 168 (298)
T PF12719_consen 94 THGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR--ISD---PPKVLSRLLLLYFNPSTED 168 (298)
T ss_pred HcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC--CCc---HHHHHHHHHHHHcCcccCC
Confidence 654322 1 2234677888888888877777788888888765422 111 1344445555554443222
Q ss_pred cchHhHHHHHHHHHHHh
Q 002697 580 KDLFPLLECFTSIAQAL 596 (891)
Q Consensus 580 ~~~~~~~~~l~~i~~~~ 596 (891)
. ..+-.|++.....+
T Consensus 169 ~--~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 169 N--QRLRQCLSVFFPVY 183 (298)
T ss_pred c--HHHHHHHHHHHHHH
Confidence 2 24555666555443
No 175
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.51 E-value=2.2 Score=48.61 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=114.1
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHhHHHHhch-HhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhch
Q 002697 662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR 740 (891)
Q Consensus 662 ~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~ 740 (891)
..+.|.+...++.....+|..-..++..+..+.| ..+.|.++.++|.+++.|+-+ +..+|..+..++-.+....+
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~----D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP----DVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC----ccchhhhHhhhhhHHHHhcc
Confidence 3478888888876667788888888999999888 457899999999999999998 67888888889988888777
Q ss_pred hhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCc-cCcchhHHHHHHHhhccCC
Q 002697 741 QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPEL-VSPHMEHFMQPWCIALSMI 805 (891)
Q Consensus 741 ~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~l~~~~~~l~~~ 805 (891)
.-...|+..+++.+..+=.+.++....+|+.|..+++.+.+.-|.. +.+|-+.++..+.+.|.++
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK 1007 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH
Confidence 7778889999988887665554323578999999999999965543 4678888999988888764
No 176
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.028 Score=54.87 Aligned_cols=134 Identities=17% Similarity=0.204 Sum_probs=100.7
Q ss_pred cccHHHHHHHHHHHHHHHcCcchhhhhHH---HHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhh
Q 002697 364 VWNLRKCSAAALDVLSNVFGDEILPTLMP---VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP 440 (891)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~---~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~ 440 (891)
+|.....+...+.+++..-+..+-+.+.. .+.+.+++.- -.+-.+|+++++.+.....+.+...++.++-.++.
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlR---S~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ 177 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLR---SAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLH 177 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58777788888888887766544344333 3444444444 56778999999999998877777777778888887
Q ss_pred hcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Q 002697 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (891)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~ 511 (891)
.-...+..||..|-.+|..+..+..+ ..+++.+...+...++++|..++.++.+.....+
T Consensus 178 ka~~dnrFvreda~kAL~aMV~~vtp-----------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 178 KASQDNRFVREDAEKALVAMVNHVTP-----------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred hhcccchHHHHHHHHHHHHHHhccCh-----------HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 77888999999999999988887643 2566677777777889999999988887766553
No 177
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.49 E-value=1.3 Score=45.73 Aligned_cols=347 Identities=15% Similarity=0.119 Sum_probs=171.5
Q ss_pred CChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhcc--CChhh----HHHHHHhHhhhhhcCChHHHHHHHHHHHHH
Q 002697 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--MSPSN----QQYIKSELLPCLGAADRHIRSTVGTIVSVV 120 (891)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~--~~~~~----~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i 120 (891)
+.+...+++++.. ...+ +.-+....++-..+...-.. +-... +...-...+..|.+.+..+-+..+.+++.+
T Consensus 64 ~~~v~~fi~LlS~-~~kd-d~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~l 141 (442)
T KOG2759|consen 64 AQYVKTFINLLSH-IDKD-DTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKL 141 (442)
T ss_pred HHHHHHHHHHhch-hhhH-HHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3455566666653 2333 34444555554444332111 11111 111123456677788889988889999998
Q ss_pred Hhhcc----cCchHHHHHHHHHHhcc-CChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHH
Q 002697 121 VQLGG----IAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTS 195 (891)
Q Consensus 121 ~~~~~----~~~w~~ll~~L~~~l~~-~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 195 (891)
+.... .....-....|...+++ .+...+..+.+||..++..-.....- +. .+-...+++.+. -+..+-.
T Consensus 142 a~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~-v~---adg~~~l~~~l~--s~~~~~Q 215 (442)
T KOG2759|consen 142 ACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF-VI---ADGVSLLIRILA--STKCGFQ 215 (442)
T ss_pred HHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee-ee---cCcchhhHHHHh--ccCcchh
Confidence 87642 12333345666666665 56677888889998887642221100 00 011122333332 1224677
Q ss_pred HHHHHHHHHHHHhcccchhhHHhHH--HHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHH------
Q 002697 196 LRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEY------ 266 (891)
Q Consensus 196 vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~------ 266 (891)
++...+-|+-.+... +.+..++. .+++.+...+.+ ..+.|-+-++..+..+++..++. .+...+...
T Consensus 216 lQYqsifciWlLtFn--~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~--~~~k~~~~~mv~~~v 291 (442)
T KOG2759|consen 216 LQYQSIFCIWLLTFN--PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDR--ETKKDIASQMVLCKV 291 (442)
T ss_pred HHHHHHHHHHHhhcC--HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh--hHHHHHHHHHHhcCc
Confidence 888888887766532 22223332 235566655543 23556666777777777766532 111112212
Q ss_pred --HHhhcC---CCCHHHHHHHHHHHHHhhccC-CchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCC
Q 002697 267 --MLQVNK---DTDDDVALEACEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (891)
Q Consensus 267 --~~~~~~---~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~ 340 (891)
.++.++ -.|++++ ..++++..-.+.. .....+..|..++..-.+
T Consensus 292 ~k~l~~L~~rkysDEDL~-~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L----------------------------- 341 (442)
T KOG2759|consen 292 LKTLQSLEERKYSDEDLV-DDIEFLTEKLKNSVQDLSSFDEYKSELRSGRL----------------------------- 341 (442)
T ss_pred hHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHhhccHHHHHHHHHhCCc-----------------------------
Confidence 222222 2455543 3345444322210 000001112222111110
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHh
Q 002697 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (891)
Q Consensus 341 ~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~ 420 (891)
.|++-+-.......=+..+.+.-. .++..+.+++...++ +..-..|+.=+|...
T Consensus 342 -----------------------~WSP~Hk~e~FW~eNa~rlnenny-ellkiL~~lLe~s~D--p~iL~VAc~DIge~V 395 (442)
T KOG2759|consen 342 -----------------------EWSPVHKSEKFWRENADRLNENNY-ELLKILIKLLETSND--PIILCVACHDIGEYV 395 (442)
T ss_pred -----------------------CCCccccccchHHHhHHHHhhccH-HHHHHHHHHHhcCCC--CceeehhhhhHHHHH
Confidence 122222222222111222222111 345556666655433 677778888889888
Q ss_pred hcchhhhhhhHHH--HHHHHhhhcCCCChHHHHHHHHHHHhhHH
Q 002697 421 EGCIKGLYPHLSE--IVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (891)
Q Consensus 421 ~~~~~~~~~~l~~--i~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 462 (891)
+..++.- ..+.+ .=..+...+++++|.||..|+.|+..+..
T Consensus 396 r~yP~gk-~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 396 RHYPEGK-AVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HhCchHh-HHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 8776532 12221 12347778899999999999999877654
No 178
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=96.48 E-value=1.5 Score=46.58 Aligned_cols=316 Identities=16% Similarity=0.118 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHcC---c-ch----hhhhHHHHHHhhcc----CCCcchHHHHHHHHHHHHHhhcch--hhhh-hhHH
Q 002697 368 RKCSAAALDVLSNVFG---D-EI----LPTLMPVIQAKLSA----SGDEAWKDREAAVLALGAIAEGCI--KGLY-PHLS 432 (891)
Q Consensus 368 r~~a~~~l~~l~~~~~---~-~~----~~~l~~~l~~~l~~----~~~~~~~~r~aa~~~l~~l~~~~~--~~~~-~~l~ 432 (891)
|..|...|...-.... + .. ++.+.+++..-+.+ .+...-+.-..|+.++|.+..... +.+. ....
T Consensus 10 r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~ 89 (372)
T PF12231_consen 10 RLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFAS 89 (372)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHH
Confidence 5566666655544442 1 11 23344444443333 111125666788888887664321 1222 1222
Q ss_pred HHHHHHhhhcCCCC--hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH
Q 002697 433 EIVAFLIPLLDDKF--PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD--TNKRVQEAACSAFATLEE 508 (891)
Q Consensus 433 ~i~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~~v~~~a~~al~~l~~ 508 (891)
.++...+..+.+++ ..+...++|+++. ..++ +..........+-..+..+.+ ++..+-.....++.+++.
T Consensus 90 ~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~ 163 (372)
T PF12231_consen 90 FIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFS----PKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLS 163 (372)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCC----CcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHH
Confidence 36666677776543 3677778888764 1111 111222222333334444543 456778888999999999
Q ss_pred HhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHH
Q 002697 509 EAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLEC 588 (891)
Q Consensus 509 ~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 588 (891)
..+..+..+...-++.++..+-+.....+..+......+...+++.. .+ ...+.+.++....
T Consensus 164 q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~----~~---s~~~~~~~~~~~~----------- 225 (372)
T PF12231_consen 164 QFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNK----EL---SKSVLEDLQRSLE----------- 225 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhH----HH---HHHHHHHhccccc-----------
Confidence 88877776666555555555544444455444444444444454331 11 1112222222110
Q ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhH---HhhhccchHH
Q 002697 589 FTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI---ESLVAQSNLR 665 (891)
Q Consensus 589 l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~l~ 665 (891)
+. .|.+.+++.+..++.... + -..+.+.++.++.-+|... .+++.. .+
T Consensus 226 ---------~~--~~~~~~~~~L~~mi~~~~-------------~---~~~a~~iW~~~i~LL~~~~~~~w~~~n~--wL 276 (372)
T PF12231_consen 226 ---------NG--KLIQLYCERLKEMIKSKD-------------E---YKLAMQIWSVVILLLGSSRLDSWEHLNE--WL 276 (372)
T ss_pred ---------cc--cHHHHHHHHHHHHHhCcC-------------C---cchHHHHHHHHHHHhCCchhhccHhHhH--HH
Confidence 11 233444555544444210 0 1125666777777777542 234443 88
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhHHHHhchH---hhHHhHHHHHHHHHHhcCCCCCcC-chhHhhhHHHHHHHHH
Q 002697 666 DMLLQCCMDDASDVRQSAFALLGDLARVCPV---HLQARLSDFLDIAAKQLNTPKLKE-TVSVANNACWAIGELA 736 (891)
Q Consensus 666 ~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~i~~~l~~~l~~~~~~~-~~~v~~~a~~alg~l~ 736 (891)
.+...|+++.++.+|..|+.++..++..... .....+.-+...+...++...... ...++..++..++.+.
T Consensus 277 ~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 277 KVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 8888999999999999999999998875431 122344445555555555543211 1256667666666654
No 179
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.47 E-value=1.6 Score=46.56 Aligned_cols=69 Identities=20% Similarity=0.185 Sum_probs=44.9
Q ss_pred HHHHHHHHhc-CCChHHHHHHHHHHhHHHHhch--HhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHH
Q 002697 664 LRDMLLQCCM-DDASDVRQSAFALLGDLARVCP--VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (891)
Q Consensus 664 l~~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~ 737 (891)
++..|...+. +.++.+...|+.=+|.++++.| ..+..-+. .=..+++.+.++ +.+||..|..|+..+..
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~----d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHE----DPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCC----CHHHHHHHHHHHHHHHH
Confidence 4445555552 3456666677777999999986 23322221 223455666777 78999999999998754
No 180
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=5.9 Score=52.38 Aligned_cols=288 Identities=14% Similarity=0.078 Sum_probs=166.5
Q ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchh--------hhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhH
Q 002697 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK--------GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (891)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~--------~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~ 461 (891)
+++.+...+...+ ...+.++..++..+-+.... ...+....+++.+.+...++...-|...+..++.+.
T Consensus 985 ~ldal~~~l~~~~---~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 985 FLDALVESLSHEN---SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHhccc---hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 5677777777777 88899999998877654321 124777888999999999999999999888888877
Q ss_pred HHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHH----HHHHHHHHHHHHhc-----ccch-HhHHHHHHHHHHHHcc
Q 002697 462 KFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQE----AACSAFATLEEEAA-----EELA-PRLEIILQHLMMAFGK 531 (891)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~----~a~~al~~l~~~~~-----~~~~-~~l~~il~~l~~~l~~ 531 (891)
+.++.. ..-++...++..++..+.|...++-. .+-..+..+...+. +.-. .....++..+..-+.+
T Consensus 1062 ~~~~~~----~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~n 1137 (3550)
T KOG0889|consen 1062 ESMPSL----WLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFN 1137 (3550)
T ss_pred hhchHH----HHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcC
Confidence 766532 24556677888888888765433222 33344444443321 1111 2345566667777778
Q ss_pred cchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCc--ch-----HhHHHHHHHHHHHhccccccch
Q 002697 532 YQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDK--DL-----FPLLECFTSIAQALGAGFTQFA 604 (891)
Q Consensus 532 ~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~--~~-----~~~~~~l~~i~~~~~~~~~~~~ 604 (891)
++..++..+..++..+.+..|... ..++-++.+.+....-..+ .. ...++.+.. +...|+.+-.|.
T Consensus 1138 pN~~VR~~~~~~L~~i~~~s~~~v------~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~f-C~~l~p~~f~~~ 1210 (3550)
T KOG0889|consen 1138 PNSDVREFSQKLLRLISELSGKSV------VKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITF-CLSLGPCLFDFT 1210 (3550)
T ss_pred CchHHHHHHHHHHHHHHHHcCCcH------HHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHH-HHHcCCcccCch
Confidence 888888899999998888876543 3444455555522111111 10 111222211 223444444444
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcC----CChHHH
Q 002697 605 QPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD----DASDVR 680 (891)
Q Consensus 605 ~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~vr 680 (891)
+.++..... ++.++...... ... +...... .....|
T Consensus 1211 ~~l~~l~~~------------------------------~~~La~~~~~~---------~~~-i~k~~~~k~~~~l~~Lr 1250 (3550)
T KOG0889|consen 1211 EELYRLKRF------------------------------LIALADAEEDE---------LAT-IQKTSDYKNSSSLVRLR 1250 (3550)
T ss_pred HHHHHHHHH------------------------------HHHhhhhhhhh---------hhh-hhcccccccccccccch
Confidence 443331110 11111110000 000 0000000 122357
Q ss_pred HHHHHHHhHHHHhch---HhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHH
Q 002697 681 QSAFALLGDLARVCP---VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGEL 735 (891)
Q Consensus 681 ~~a~~~l~~l~~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l 735 (891)
..+..++++.....+ ....++.+.++..+++.+..+ ..+..+.+..++-..
T Consensus 1251 ~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~----~~Ei~~~~~~~l~~v 1304 (3550)
T KOG0889|consen 1251 VACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR----SSELIEVALEGLRKV 1304 (3550)
T ss_pred hHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC----hHHHHHHHHHHHHhh
Confidence 788888888777654 356688899999999999877 556766666666544
No 181
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.35 E-value=2.1 Score=46.77 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=87.7
Q ss_pred HhHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhcc
Q 002697 583 FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQ 661 (891)
Q Consensus 583 ~~~~~~l~~i~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 661 (891)
.+.+.|+-.+++.+.. .-.+--..+.+.+++++.. ++.-+...++.++..++--++.--..++..
T Consensus 395 aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~d--------------p~~~i~~~~lgai~NlVmefs~~kskfl~~ 460 (678)
T KOG1293|consen 395 AAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMD--------------PEIMIMGITLGAICNLVMEFSNLKSKFLRN 460 (678)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhC--------------cchhHHHHHHHHHHHHHhhcccHHHHHHHc
Confidence 6778887777665432 1113344566666666641 144455667788888887777655555553
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhH-HhHHHHHHHHHHh-cCCCCCcCchhHhhhHHHHHHHHH
Q 002697 662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ-ARLSDFLDIAAKQ-LNTPKLKETVSVANNACWAIGELA 736 (891)
Q Consensus 662 ~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~i~~~l~~~-l~~~~~~~~~~v~~~a~~alg~l~ 736 (891)
..+..+.....+.++.+|..+..++.+++-.+...+. ..+.++....+.. ..++ +..|.+.+...+-.+.
T Consensus 461 -ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~----d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 461 -NGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP----DWAVQEQCFQLLRNLT 532 (678)
T ss_pred -CcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC----CHHHHHHHHHHHHHhh
Confidence 5777888888999999999999999999988875432 3334444443333 3444 6778777776665554
No 182
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.32 E-value=0.076 Score=44.04 Aligned_cols=77 Identities=16% Similarity=0.313 Sum_probs=65.0
Q ss_pred ChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhch-hhhhhHHHHHHHHH
Q 002697 676 ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLCL 754 (891)
Q Consensus 676 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-~~~~~~~~~il~~l 754 (891)
+...|..++..++.+++.++..+..+.++++..|...+..+ +.|..|+.+...++...+ +++.|.+++++..+
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~------eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP------ELRSLALRCWHVLIKTLKEEELGPLLDQIFAAI 101 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44668899999999999999999999999999999998765 799999999999998886 45777777777776
Q ss_pred HHHh
Q 002697 755 VPIL 758 (891)
Q Consensus 755 ~~~l 758 (891)
.+.+
T Consensus 102 ~~~~ 105 (107)
T smart00802 102 LPLW 105 (107)
T ss_pred HHhc
Confidence 6654
No 183
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.29 E-value=0.78 Score=47.26 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=85.6
Q ss_pred HHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcc-ccCC
Q 002697 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL-DSDV 170 (891)
Q Consensus 92 ~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~-~~~~ 170 (891)
..+...++.++.+++..+|..+-.+++..+-.+. ..-.+.++.+.+.++.++..++..|++++..+.-..+... ....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 3344455579999999999999999999887653 2335667777777777788999999999988877665432 2111
Q ss_pred CCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcc
Q 002697 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (891)
Q Consensus 171 ~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (891)
.+........+...+.+++.+.++++|..|++.+..+.-.
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 0000122456788889999999999999999999998643
No 184
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=96.27 E-value=0.26 Score=54.89 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhHH-------HHHHHHHHHHhcCChhhhhhHHHhHH
Q 002697 701 RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIV-------MTVVLCLVPILKHSEELNKSLIENSA 773 (891)
Q Consensus 701 ~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~-------~~il~~l~~~l~~~~~~~~~~~~~~~ 773 (891)
|-+.++......+..+. +..+-++++-+|-.+..... -...|+ +..++.++.++...+ ..+...++
T Consensus 515 w~p~vVr~Yl~Ll~~s~---n~~TlEasaGaLQNltA~~~-~~~~~~~~~v~~kekgl~~l~~ll~~~~---~~vv~s~a 587 (717)
T KOG1048|consen 515 WHPSVVRPYLLLLALSK---NDNTLEASAGALQNLTAGLW-TWSEYMRGAVFRKEKGLPPLVELLRNDD---SDVVRSAA 587 (717)
T ss_pred ecHHHHHHHHHHHHHhc---chHHHHHhhhhHhhhhccCC-cchhHHHhhhhhhccCccHHHHHHhcCC---chHHHHHH
Confidence 44566666555555433 45677777777766653322 111121 334566777777764 67888888
Q ss_pred HHHhhhhhh--cCCccCcchhHHHHHHHhhccCCCC----chH-HHHHHHHHHHHHhhChhhhH-----hhHHHHhhHhh
Q 002697 774 ITLGRLAWV--CPELVSPHMEHFMQPWCIALSMIRD----DTE-KEDAFRGLCAMVKANPSGAL-----SSLVFMCRAIA 841 (891)
Q Consensus 774 ~~l~~l~~~--~~~~~~~~~~~~l~~~~~~l~~~~~----~~e-~~~~~~~l~~l~~~~~~~~~-----~~l~~~~~~~~ 841 (891)
+++..+... +.+.+. ...++.++..|+.... .++ -..++..+..++..++.... ..++.++-+..
T Consensus 588 ~~LrNls~d~rnk~lig---k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~ 664 (717)
T KOG1048|consen 588 GALRNLSRDIRNKELIG---KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISK 664 (717)
T ss_pred HHHhhhccCchhhhhhh---cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhc
Confidence 999888864 333332 4567888888887544 233 33556668888877665433 45666666666
Q ss_pred cccccCchhHH--HHHHHHHHHHHhhcC
Q 002697 842 SWHEIRSEELH--NEVCQVLHGYKQMLR 867 (891)
Q Consensus 842 ~~~~~~~~~~~--~~~~~~l~~~~~~~~ 867 (891)
++.++ .+.+ ..+.+.+-.+++.++
T Consensus 665 s~~S~--k~~kaAs~vL~~lW~y~eLh~ 690 (717)
T KOG1048|consen 665 SQHSP--KEFKAASSVLDVLWQYKELHF 690 (717)
T ss_pred ccCCH--HHHHHHHHHHHHHHHHHHHhh
Confidence 63322 1222 234444555565554
No 185
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.21 E-value=0.49 Score=50.95 Aligned_cols=236 Identities=17% Similarity=0.194 Sum_probs=136.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hcCCChH----HHHHHHhhc--cCCCCHHHHHH-HHHHHHHhHHhhhccC
Q 002697 15 NEICRLLEQQISPSSTADKSQIWQQLQQY-SQFPDFN----NYLAFILAR--AEGKSVEIRQA-AGLLLKNNLRTAYKSM 86 (891)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~-~~~p~~~----~~l~~il~~--~~~~~~~~R~~-a~~~Lk~~i~~~w~~~ 86 (891)
.-+.+++....|+|+. .|......|.++ .+.++.- ..+..++.+ .++... ..-. ..-.+...+...-..+
T Consensus 133 ~fi~~Ll~l~~S~D~r-ER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~-~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPR-ERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERH-NGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHHHHHTTTSSTHH-HHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS---STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccc-cCHHHHHHHHHHHHhccCCCC
Confidence 3467777788889988 899988888874 4555432 222333320 001111 1111 1112222222222246
Q ss_pred ChhhHHHHHHhHhhhhhcC-ChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhc
Q 002697 87 SPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (891)
Q Consensus 87 ~~~~~~~i~~~ll~~L~~~-~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~ 165 (891)
.++.+..+...++.+...+ -......+..++..++.+++ ..-..++..+....--.++.-...-+.-+..+++.+++.
T Consensus 211 k~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp-~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~ 289 (409)
T PF01603_consen 211 KEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP-SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPE 289 (409)
T ss_dssp -HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G-GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HH
T ss_pred cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHH
Confidence 7888888888888888876 34557888889998888773 233445555555554455555555666677777765542
Q ss_pred cccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHH--hcccchhhHHhHHHHHHHHHHhhC-CCCHHHHHHHH
Q 002697 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF--IMLMPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVC 242 (891)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~--~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~v~~~~~ 242 (891)
- |......++..+..++++++..|...|+..+++- +..+.+.-...++.+++.+..... .-+..+|..++
T Consensus 290 ~-------f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~ 362 (409)
T PF01603_consen 290 E-------FQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQ 362 (409)
T ss_dssp H-------HHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1 1234567788888889999999999998776432 222211111222333444443332 33678999999
Q ss_pred HHHHHHHhhChhhhhHhH
Q 002697 243 AAFNLLIEVRPSFLEPHL 260 (891)
Q Consensus 243 ~~l~~l~~~~~~~~~~~l 260 (891)
.++..+.+..++.+....
T Consensus 363 ~vl~~l~~~d~~lf~~~~ 380 (409)
T PF01603_consen 363 NVLKILMEMDPKLFDKCA 380 (409)
T ss_dssp HHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHH
Confidence 999999999988776533
No 186
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.18 E-value=0.47 Score=50.52 Aligned_cols=177 Identities=16% Similarity=0.270 Sum_probs=103.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcC----CCCHHHHHHHHHHHHHhhccCCc
Q 002697 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK----DTDDDVALEACEFWHSYFEAQLP 295 (891)
Q Consensus 220 ~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~----~~~~~v~~~a~~~l~~l~~~~~~ 295 (891)
+.|...+.+.+...++..|..|++.|.. ++ -+...++.++.++-.... ..+-..-...+....++.+++.
T Consensus 206 QlYy~~It~a~~g~~~~~r~eAL~sL~T----Ds-GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~- 279 (576)
T KOG2549|consen 206 QLYYKEITEACTGSDEPLRQEALQSLET----DS-GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN- 279 (576)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcc----Cc-cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc-
Confidence 3445555555555778888988887742 11 111222222333222211 1233344455666677777632
Q ss_pred hhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHH
Q 002697 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (891)
Q Consensus 296 ~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l 375 (891)
=.+.||+..++|.++.++....-. .+| + .++.|.+|..|+.++
T Consensus 280 -i~lepYlh~L~PSvlTCvVsk~l~------------------~~p---------------~---~dnhwaLRDfAA~ll 322 (576)
T KOG2549|consen 280 -IFLEPYLHQLVPSVLTCVVSKNLC------------------LRP---------------E---LDNHWALRDFAARLL 322 (576)
T ss_pred -cchhhHHHHHhhHHHHhhhhhhcc------------------CCc---------------c---ccchHHHHHHHHHHH
Confidence 357799999999988776532100 000 1 224799999999999
Q ss_pred HHHHHHcCcc---hhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhh-hhhHHHHHHHHhh
Q 002697 376 DVLSNVFGDE---ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIP 440 (891)
Q Consensus 376 ~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~-~~~l~~i~~~l~~ 440 (891)
..++..+++. .-+.+...+.+.+.+.. ..|...++++..|..+.....+.+ .+.+......+-+
T Consensus 323 ~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~-~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~ 390 (576)
T KOG2549|consen 323 AQICKNFSTLYNNLQPRITRTLSKALLDNK-KPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQS 390 (576)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhcCCC-CCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhh
Confidence 9999999863 34556666666665531 228999999999888876443322 2444444443333
No 187
>PF05536 Neurochondrin: Neurochondrin
Probab=96.15 E-value=3.1 Score=46.63 Aligned_cols=240 Identities=16% Similarity=0.142 Sum_probs=136.0
Q ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhh--h-hhhHHHHH-HHHhhhcCC-------CChHHHHHHHHHHH
Q 002697 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG--L-YPHLSEIV-AFLIPLLDD-------KFPLIRSISCWTLS 458 (891)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~--~-~~~l~~i~-~~l~~~l~d-------~~~~vr~~a~~~l~ 458 (891)
.+..+..++++.+ -..|.+|+..+..+..+-... . +..++.+= +++-..|.. +...-+.-|...+.
T Consensus 6 ~l~~c~~lL~~~~---D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 6 SLEKCLSLLKSAD---DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHhccCC---cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 3445566677766 677899988888887643311 0 11222221 222233332 22355666777777
Q ss_pred hhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhcccchHhH-HHHHHHHHHHHcccchhH
Q 002697 459 RFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK-RVQEAACSAFATLEEEAAEELAPRL-EIILQHLMMAFGKYQRRN 536 (891)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~-~v~~~a~~al~~l~~~~~~~~~~~l-~~il~~l~~~l~~~~~~~ 536 (891)
.|+. .++. ...+.+-.-+|.+++.+...+. .+...|..+|..++. .++.-...+ ...++.|..++.+ +...
T Consensus 83 ~f~~-~~~~----a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~ 155 (543)
T PF05536_consen 83 AFCR-DPEL----ASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQ 155 (543)
T ss_pred HHcC-Chhh----hcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-Ccch
Confidence 7765 1211 1345566778899998887665 788889999998883 322221111 2345555555554 4445
Q ss_pred HHHHHHHHHHHHHHhcccCC--chhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccc--ccc----chHHHH
Q 002697 537 LRIVYDAIGTLADAVGFELN--QPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAG--FTQ----FAQPVF 608 (891)
Q Consensus 537 ~~~~~~al~~l~~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~--~~~----~~~~i~ 608 (891)
...++..+..+....+.+.. .+..+..+++.+-..+.... +.....+++.++.+....+.. -.+ ....+.
T Consensus 156 ~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~--~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~ 233 (543)
T PF05536_consen 156 MEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH--GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLR 233 (543)
T ss_pred HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHH
Confidence 66677777777666553221 12445566666666665432 222356677777665554211 112 344455
Q ss_pred HHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhh
Q 002697 609 QRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSG 654 (891)
Q Consensus 609 ~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~ 654 (891)
..+..++++.. .+..|..++.+.+.+.+.+|..
T Consensus 234 ~gl~~iL~sr~-------------~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 234 KGLRDILQSRL-------------TPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHhcCC-------------CHHHHHHHHHHHHHHHHHhChH
Confidence 55555555321 4456777888899999998875
No 188
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=1.6 Score=44.26 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=97.2
Q ss_pred CChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHH-H
Q 002697 143 NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-Q 221 (891)
Q Consensus 143 ~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ 221 (891)
.+...++.|+.-|..+++.+....+-. . -..+..++.++++.+..+|..|...++..+...|......++ .
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~-------~-~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~ 166 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLI-------S-LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELG 166 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHh-------h-ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc
Confidence 366889999999999998775432110 1 223555666999999999999999999999988865444333 3
Q ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhChhhhhHhHH-HHHHHHHhhcCC--CCHHHHHHHHHHHHHhhcc
Q 002697 222 YLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKD--TDDDVALEACEFWHSYFEA 292 (891)
Q Consensus 222 ~l~~l~~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~--~~~~v~~~a~~~l~~l~~~ 292 (891)
+++.++..+. +++..+|..++-++..++.+.+.-...++. .=...+..++++ .+...++.++.++..+.+.
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 5677777665 445678899999999999887654433322 113344555665 3455667777777776654
No 189
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.06 E-value=0.045 Score=49.79 Aligned_cols=149 Identities=16% Similarity=0.180 Sum_probs=89.5
Q ss_pred hhhccchHHHHHHHHhcCC-ChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcC-chhHhhhHHHHHHH
Q 002697 657 SLVAQSNLRDMLLQCCMDD-ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKE-TVSVANNACWAIGE 734 (891)
Q Consensus 657 ~~~~~~~l~~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~-~~~v~~~a~~alg~ 734 (891)
||...|.+++.+...++.+ ++.+|..++.++|-+- ++.||.-+-+. ...+.....+ +........
T Consensus 4 PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-----ALDP~~~k~~~---~~~~~~~~~~~~~~~~~~~l----- 70 (160)
T PF11865_consen 4 PYLDYPELLDILLNILKTEQSQSIRREALRVLGILG-----ALDPYKHKSIQ---KSLDSKSSENSNDESTDISL----- 70 (160)
T ss_pred hHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----ccCcHHHhccc---ccCCccccccccccchhhHH-----
Confidence 4554467888888888654 6899999999998865 34455443221 1111110000 111111111
Q ss_pred HHHhc---hhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccCCCCchHH
Q 002697 735 LAVKA---RQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEK 811 (891)
Q Consensus 735 l~~~~---~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~e~ 811 (891)
..... .+++ |..-++..|..++.++. -.+-..+++.++-.+.........+|+++++|.+++.+....+ .-+
T Consensus 71 ~~~~~~~~~ee~--y~~vvi~~L~~iL~D~s--Ls~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~-~~~ 145 (160)
T PF11865_consen 71 PMMGISPSSEEY--YPTVVINALMRILRDPS--LSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD-SLR 145 (160)
T ss_pred hhccCCCchHHH--HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH-HHH
Confidence 11111 2222 44556788889998875 2344446677776666554444578999999999999987555 556
Q ss_pred HHHHHHHHHHHh
Q 002697 812 EDAFRGLCAMVK 823 (891)
Q Consensus 812 ~~~~~~l~~l~~ 823 (891)
+..+..|+.++.
T Consensus 146 e~~~~qL~~lv~ 157 (160)
T PF11865_consen 146 EFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHH
Confidence 677777777764
No 190
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=3.1 Score=45.84 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHH----hHhhhhhcCCh
Q 002697 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS----ELLPCLGAADR 107 (891)
Q Consensus 32 ~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~----~ll~~L~~~~~ 107 (891)
+||-+++.|.++.+ +.+..-|. ..+.++|..|+.++-+...-.-+....+..+.+.+ .+..+|.++-+
T Consensus 163 ~~qgVeeml~rL~~-----p~l~R~L~---a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p 234 (1005)
T KOG1949|consen 163 VRQGVEEMLYRLYK-----PILWRGLK---ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYP 234 (1005)
T ss_pred HhhhHHHHHHHHHh-----HHHHHhhc---cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45555555555543 23444343 45789999999888655433322333333443332 35567789999
Q ss_pred HHHHHHHHHHHHHHhhc----ccCchHHHHHHHHHHhc-cCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhH
Q 002697 108 HIRSTVGTIVSVVVQLG----GIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (891)
Q Consensus 108 ~vr~~~a~~l~~i~~~~----~~~~w~~ll~~L~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~ 182 (891)
.||+.+..-+..+.... |+.-..+++..+..-+. +....+|-+.+..|..+...-.. -..++.++
T Consensus 235 ~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s----------h~~le~~L 304 (1005)
T KOG1949|consen 235 MVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS----------HPLLEQLL 304 (1005)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc----------hhHHHHHH
Confidence 99999888888877653 23333344444443332 33457888877777666542111 13457788
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 002697 183 PRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (891)
Q Consensus 183 ~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (891)
|.+-..+.|.+..||.++.+.+..+-.
T Consensus 305 pal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 305 PALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HhcchhhhccchhHHHHHHHHHHHHHh
Confidence 888888889999999999998877643
No 191
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.02 E-value=1.6 Score=42.14 Aligned_cols=88 Identities=22% Similarity=0.272 Sum_probs=63.1
Q ss_pred HHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC--CChHHHHHHHHHHHhhHHHHhhhhCCC
Q 002697 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD--KFPLIRSISCWTLSRFSKFIVQDIGHQ 471 (891)
Q Consensus 394 l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~ 471 (891)
+.+.+..+. .-.|..+.++||++-..+ -+|.+.+.|.| .+|.||.-|+.+||.++.
T Consensus 192 l~~~l~~~S---alfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------- 249 (289)
T KOG0567|consen 192 LIDGLADDS---ALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------- 249 (289)
T ss_pred HHHhcccch---HHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---------
Confidence 344444444 777888888888876532 35666666655 688999999999998765
Q ss_pred cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 002697 472 NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (891)
Q Consensus 472 ~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (891)
+..++.|.+.+.|+...|++.|..+|...--.
T Consensus 250 ------e~~~~vL~e~~~D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 250 ------EDCVEVLKEYLGDEERVVRESCEVALDMLEYE 281 (289)
T ss_pred ------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 35566777788898888999998888765433
No 192
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.02 E-value=0.13 Score=56.44 Aligned_cols=254 Identities=15% Similarity=0.157 Sum_probs=154.6
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHH
Q 002697 188 FFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYM 267 (891)
Q Consensus 188 ~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~ 267 (891)
-++-.+.+-|..-..-|...++..|+++..+ .+++.++..+.-.+ -....+..+..+...... .+|-..+++.+
T Consensus 262 el~lks~~eK~~Ff~~L~~~l~~~pe~i~~~--kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~--~eyq~~i~p~l 335 (690)
T KOG1243|consen 262 ELRLKSVEEKQKFFSGLIDRLDNFPEEIIAS--KVLPILLAALEFGD--AASDFLTPLFKLGKDLDE--EEYQVRIIPVL 335 (690)
T ss_pred hcccCcHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHhhccc--cchhhhhHHHHhhhhccc--cccccchhhhH
Confidence 3444555556665666666555555554432 23444444332111 011112222222111110 02445678888
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCccccccc
Q 002697 268 LQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSR 347 (891)
Q Consensus 268 ~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 347 (891)
++.+...|..+|..-++-+-.++++ .... .+-++++|.+...+..++
T Consensus 336 ~kLF~~~Dr~iR~~LL~~i~~~i~~--Lt~~--~~~d~I~phv~~G~~DTn----------------------------- 382 (690)
T KOG1243|consen 336 LKLFKSPDRQIRLLLLQYIEKYIDH--LTKQ--ILNDQIFPHVALGFLDTN----------------------------- 382 (690)
T ss_pred HHHhcCcchHHHHHHHHhHHHHhhh--cCHH--hhcchhHHHHHhhcccCC-----------------------------
Confidence 8888889999998877777666655 1111 123566676655444221
Q ss_pred CCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchh-hhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhh
Q 002697 348 LHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG 426 (891)
Q Consensus 348 ~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~ 426 (891)
-++|.....++..++..++...+ ..++..+...-.+++ ...|-..-.|+|.++......
T Consensus 383 -----------------~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~---~~irtntticlgki~~~l~~~ 442 (690)
T KOG1243|consen 383 -----------------ATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH---GGIRTNTTICLGKIAPHLAAS 442 (690)
T ss_pred -----------------HHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc---Ccccccceeeecccccccchh
Confidence 15788899999999999887643 455665555444555 667777777888877654322
Q ss_pred hhhhHHHH-HHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002697 427 LYPHLSEI-VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFAT 505 (891)
Q Consensus 427 ~~~~l~~i-~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~ 505 (891)
.+ ..+ .......+.||-+.-|.++.+.+....+.+. ......++++.+.....|+++.||..|..++..
T Consensus 443 ~R---~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~-------~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 443 VR---KRVLASAFTRALKDPFVPARKAGVLALAATQEYFD-------QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred hh---ccccchhhhhhhcCCCCCchhhhhHHHhhcccccc-------hhhhhhhccccccccccCcccchhhHHHHHHHH
Confidence 11 112 2233446889999999999998887766653 566677888888888889999999999999988
Q ss_pred HHHHh
Q 002697 506 LEEEA 510 (891)
Q Consensus 506 l~~~~ 510 (891)
+.+..
T Consensus 513 fl~kl 517 (690)
T KOG1243|consen 513 FLEKL 517 (690)
T ss_pred HHhhh
Confidence 77654
No 193
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.02 E-value=0.84 Score=43.88 Aligned_cols=76 Identities=28% Similarity=0.297 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCC
Q 002697 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 446 (891)
+|+.++.+|+.+-. +..+|.+.+.+.+.. +++-+|.-|+.+||.++. ++.++.+...++|+.
T Consensus 203 frhEvAfVfGQl~s-------~~ai~~L~k~L~d~~-E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 203 FRHEVAFVFGQLQS-------PAAIPSLIKVLLDET-EHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHHHHhhccc-------hhhhHHHHHHHHhhh-cchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcH
Confidence 56667666655432 344555555555421 238999999999999986 234677888899999
Q ss_pred hHHHHHHHHHHHhh
Q 002697 447 PLIRSISCWTLSRF 460 (891)
Q Consensus 447 ~~vr~~a~~~l~~~ 460 (891)
+.||..+..++.-+
T Consensus 265 ~vv~esc~valdm~ 278 (289)
T KOG0567|consen 265 RVVRESCEVALDML 278 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887643
No 194
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.82 E-value=0.092 Score=47.47 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=75.7
Q ss_pred hhhhHHHHHHHHhhhcC------------------CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHh
Q 002697 427 LYPHLSEIVAFLIPLLD------------------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (891)
Q Consensus 427 ~~~~l~~i~~~l~~~l~------------------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 488 (891)
+.++++.++|.+...+. |..-.+|.+|..++..+.+.+.. .-....++..+..++
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~-------~~~~~~~~~~v~~GL 75 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLS-------RIDISEFLDRVEAGL 75 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCS-------SS-HHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHhhc
Confidence 45788889998887654 45568999999999988875542 223667788999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHc
Q 002697 489 LDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG 530 (891)
Q Consensus 489 ~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~ 530 (891)
.| +..++.-++..+.+++...+..+.+.++.+.+.+...++
T Consensus 76 ~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 76 KD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp SS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 99 899999999999999988888888888888888888874
No 195
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=95.81 E-value=2.8 Score=43.34 Aligned_cols=112 Identities=12% Similarity=0.073 Sum_probs=72.3
Q ss_pred hhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcc---hhhh-hhhHHHHHHHHhh-hcCCCChHHHHHHHHHHHhhHH
Q 002697 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC---IKGL-YPHLSEIVAFLIP-LLDDKFPLIRSISCWTLSRFSK 462 (891)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~---~~~~-~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~~~~ 462 (891)
|.++..+..++.+.+ -...-.+..++|.++..- ...+ ..++..++..+.+ .--|.+..++.+++.++..+.-
T Consensus 314 p~~l~~~~sw~~S~d---~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDD---SNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred cHHHHHHHHHhcCCc---hhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 457888888888887 888888999999998742 2222 2455666666655 3446778888999999988765
Q ss_pred HHhhhhCCCcchhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002697 463 FIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (891)
Q Consensus 463 ~~~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (891)
-.+. ...+. ..+...++..+....++|.-.-...+.-+..
T Consensus 391 Pv~n------ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 391 PVSN------KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred cCCc------hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 3321 11111 2355666667776667776655555554443
No 196
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.80 E-value=6.9 Score=47.79 Aligned_cols=366 Identities=14% Similarity=0.112 Sum_probs=186.6
Q ss_pred HHHHHhHhh--hhhcCChHHHHHHHHHHHHHHhhccc-C-----chHHHHHHHHHHh---cc-CChhHHhHHHHHHHHHH
Q 002697 92 QYIKSELLP--CLGAADRHIRSTVGTIVSVVVQLGGI-A-----GWLELLQALVTCL---DS-NDINHMEGAMDALSKIC 159 (891)
Q Consensus 92 ~~i~~~ll~--~L~~~~~~vr~~~a~~l~~i~~~~~~-~-----~w~~ll~~L~~~l---~~-~~~~~r~~al~~L~~l~ 159 (891)
..++..|++ .|.+++..||.-.|-|++.|.+..-| . ...+++..+...+ .+ .+|... .-..+|..+.
T Consensus 47 ~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~-r~~~lletl~ 125 (1266)
T KOG1525|consen 47 LPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFK-RYFYLLETLA 125 (1266)
T ss_pred HHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchh-hHHHHHHHHH
Confidence 344555555 56789999999999999999998632 2 2233444333332 22 233211 1222333333
Q ss_pred hhc--hhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHH
Q 002697 160 EDI--PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEV 237 (891)
Q Consensus 160 ~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v 237 (891)
... --....+- +..+.+++..++..+..+.+.--..-+..+..++..... .. ..++..++.-+..+.++.
T Consensus 126 ~~k~~l~~~l~d~----~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~-v~---~e~L~~ll~~lv~~~~~~ 197 (1266)
T KOG1525|consen 126 KVKFCLLMLLEDC----QELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDT-VQ---SELLDVLLENLVKPGRDT 197 (1266)
T ss_pred HhHHHheeeccch----HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc-ch---HHHHHHHHHHhccCCCCc
Confidence 222 11111111 234566666667777666554333333344443332111 11 223555555444444556
Q ss_pred HHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCC
Q 002697 238 RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA 317 (891)
Q Consensus 238 ~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~ 317 (891)
...+...=..+++..++.+.+.+...+...+..-...-..++....+.+..+-. .....+-.++|.+-..+..
T Consensus 198 ~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~------~~p~ll~~vip~l~~eL~s- 270 (1266)
T KOG1525|consen 198 IKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWR------IAPQLLLAVIPQLEFELLS- 270 (1266)
T ss_pred cHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHH------hhHHHHHHHHHHHHHHHhc-
Confidence 666666666666666666665544444333222111111122222333333222 2233445555655433331
Q ss_pred hhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCc---chhhhhHHHH
Q 002697 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVI 394 (891)
Q Consensus 318 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l 394 (891)
+++ .+|..|..+++.+....+. +..+.+....
T Consensus 271 ---------------------------------------e~~------~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~f 305 (1266)
T KOG1525|consen 271 ---------------------------------------EQE------EVRLKAVKLVGRMFSDKDSQLSETYDDLWSAF 305 (1266)
T ss_pred ---------------------------------------chH------HHHHHHHHHHHHHHhcchhhhcccchHHHHHH
Confidence 111 2689999999888776643 2345566666
Q ss_pred HHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcch
Q 002697 395 QAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (891)
Q Consensus 395 ~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 474 (891)
...+.+.. ..+|.+++.....+.-..+. ........+.-...|.++.+|.+...++..... .. ...
T Consensus 306 l~r~~D~~---~~vR~~~v~~~~~~l~~~~~----~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v--~~-----~~l 371 (1266)
T KOG1525|consen 306 LGRFNDIS---VEVRMECVESIKQCLLNNPS----IAKASTILLALRERDLDEDVRVRTQVVIVACDV--MK-----FKL 371 (1266)
T ss_pred HHHhccCC---hhhhhhHHHHhHHHHhcCch----hhhHHHHHHHHHhhcCChhhhheeeEEEEEeeh--hH-----hhh
Confidence 66677777 88999888766554433222 111222222223344455555443222221111 00 122
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--h-----cccchHhHHHHHHHHHHHHccc
Q 002697 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE--A-----AEELAPRLEIILQHLMMAFGKY 532 (891)
Q Consensus 475 ~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~--~-----~~~~~~~l~~il~~l~~~l~~~ 532 (891)
.+...++..+.+.+.|....||..|+..|..+.+. + +..+.+-+..|-..|+.++-..
T Consensus 372 ~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~ 436 (1266)
T KOG1525|consen 372 VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYEN 436 (1266)
T ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhc
Confidence 33344788888899999999999999999999885 2 2334454555555556655443
No 197
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.78 E-value=0.49 Score=52.24 Aligned_cols=208 Identities=16% Similarity=0.159 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Q 002697 539 IVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQ 618 (891)
Q Consensus 539 ~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~ 618 (891)
..++.+..++..++.. -....++|.+...+.+. .-+..++-++-.|+.. ..-..|.+.+++.+..+++..
T Consensus 292 ~Flk~Ls~~ip~fp~r----v~~~kiLP~L~~el~n~----~~vp~~LP~v~~i~~~--~s~~~~~~~~~p~l~pi~~~~ 361 (700)
T KOG2137|consen 292 SFLKGLSKLIPTFPAR----VLFQKILPTLVAELVNT----KMVPIVLPLVLLIAEG--LSQNEFGPKMLPALKPIYSAS 361 (700)
T ss_pred HHHHHHHHhhccCCHH----HHHHhhhhHHHHHhccc----cccccccchhhhhhhc--cchhhhhhhhhHHHHHHhccC
Confidence 4455555555554443 35566777776666331 1112223333333322 223345566777776666531
Q ss_pred HHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhh
Q 002697 619 QLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHL 698 (891)
Q Consensus 619 ~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 698 (891)
+-++...+.++-++.|.+....+ .+.. .++|+|+.++++.+..+...++..+..+++...-.
T Consensus 362 -------------~~~~~~l~i~e~mdlL~~Kt~~e--~~~~--~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~- 423 (700)
T KOG2137|consen 362 -------------DPKQALLFILENMDLLKEKTPPE--EVKE--KILPLLYRSLEDSDVQIQELALQILPTVAESIDVP- 423 (700)
T ss_pred -------------CcccchhhHHhhHHHHHhhCChH--HHHH--HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH-
Confidence 13344455555566666654432 2333 49999999999999999999999999988877522
Q ss_pred HHhHHHHHHHHHHhc-CCCCCcCchhHhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHh
Q 002697 699 QARLSDFLDIAAKQL-NTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLG 777 (891)
Q Consensus 699 ~~~~~~i~~~l~~~l-~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~ 777 (891)
-.-..|+|.+.... ..+ +..++.|++-|+|.++..+.. ..+++.+.+++.+-...+..+.-.......
T Consensus 424 -~vk~~ilP~l~~l~~~tt----~~~vkvn~L~c~~~l~q~lD~------~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~ 492 (700)
T KOG2137|consen 424 -FVKQAILPRLKNLAFKTT----NLYVKVNVLPCLAGLIQRLDK------AAVLDELLPILKCIKTRDPAIVMGFLRIYE 492 (700)
T ss_pred -HHHHHHHHHhhcchhccc----chHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 12234556555442 233 678999999999999965432 122333344444322112344444444555
Q ss_pred hhhhhcCC
Q 002697 778 RLAWVCPE 785 (891)
Q Consensus 778 ~l~~~~~~ 785 (891)
+++...+.
T Consensus 493 ~l~~~~~~ 500 (700)
T KOG2137|consen 493 ALALIIYS 500 (700)
T ss_pred HHHhhccc
Confidence 55544433
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.76 E-value=0.47 Score=54.28 Aligned_cols=206 Identities=17% Similarity=0.167 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhc-C---------CChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhcc---CChhhH-HHHHHh
Q 002697 32 DKSQIWQQLQQYSQ-F---------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS---MSPSNQ-QYIKSE 97 (891)
Q Consensus 32 ~r~~a~~~L~~~~~-~---------p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~---~~~~~~-~~i~~~ 97 (891)
-|-+|-.-|.+|.. . -+..+|++.+|++ ...+.|..-. --|-+ +++.-+ +-+|+.
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS---~a~ELrpiLV--------FIWAKILAvD~SCQ~dLvKe~ 554 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS---SARELRPILV--------FIWAKILAVDPSCQADLVKEN 554 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc---chHhhhhhHH--------HHHHHHHhcCchhHHHHHhcc
Confidence 47778888887765 2 2567888888874 3345554332 22432 233222 334442
Q ss_pred ----Hhhhhhc-C--ChHHHHHHHHHHHHHHhhcccC----chHHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhc
Q 002697 98 ----LLPCLGA-A--DRHIRSTVGTIVSVVVQLGGIA----GWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQV 165 (891)
Q Consensus 98 ----ll~~L~~-~--~~~vr~~~a~~l~~i~~~~~~~----~w~~ll~~L~~~l~~~-~~~~r~~al~~L~~l~~~~~~~ 165 (891)
.++.|.+ + +++-|..+|-+++.|++....+ .-.+++..-+..++++ .+-.|.=.+.+|+.+-+++...
T Consensus 555 g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~A 634 (1387)
T KOG1517|consen 555 GYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEA 634 (1387)
T ss_pred CceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchh
Confidence 2233333 1 4578999999999999874222 1246777777777775 6888999999999999987653
Q ss_pred cccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHH----------------hHHHHHH----H
Q 002697 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV----------------SMDQYLQ----G 225 (891)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~----------------~~~~~l~----~ 225 (891)
--.-. -..-..+++..|.|+.++||.+|+-+|+.++....+.+.. ..+.++. .
T Consensus 635 rw~G~-------r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 635 RWSGR-------RDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhccc-------cccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 21111 1234567888999999999999999999999864222111 1122222 4
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhhChhh
Q 002697 226 LFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (891)
Q Consensus 226 l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~ 255 (891)
+..++++.++-+|.++...|..++..+..+
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence 445566777777777777776666554443
No 199
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.73 E-value=0.24 Score=41.44 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=69.4
Q ss_pred HHhHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 002697 216 FVSMDQYLQGLFLLSND----PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (891)
Q Consensus 216 ~~~~~~~l~~l~~~~~~----~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~ 291 (891)
.+++=.++..+-..+.+ .+...+..++..+..+++..++.+....++++-.+...++.+ +++..|+++|..++.
T Consensus 6 ~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 6 QPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHH
Confidence 34443344444444443 456778899999999999888888888888887776666544 789999999999888
Q ss_pred cCCchhhHHhhhhhhHHHHHhhc
Q 002697 292 AQLPHENLKEFLPRLVPVLLSNM 314 (891)
Q Consensus 292 ~~~~~~~~~~~l~~li~~ll~~l 314 (891)
. ...+.+.|++++++-.++++.
T Consensus 84 ~-L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 84 T-LDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred H-CCHHHHHHHHHHHHHHHHHhc
Confidence 6 244677888888887776543
No 200
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.68 E-value=3.2 Score=43.01 Aligned_cols=71 Identities=18% Similarity=0.304 Sum_probs=50.8
Q ss_pred HHHHHHhhhcCCCC-hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 002697 433 EIVAFLIPLLDDKF-PLIRSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (891)
Q Consensus 433 ~i~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (891)
+++..++..|..++ |.+-..||.-+|++.++.+.- ...++ ..=..++..++.++++||-.|..|+..+..+
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 36666777776544 888889999999999988742 11111 1224556778888999999999999887643
No 201
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.64 E-value=0.5 Score=48.02 Aligned_cols=168 Identities=18% Similarity=0.211 Sum_probs=107.8
Q ss_pred hHHHHHHH-HHHHHHhh-cc-hhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCC-CcchhhHHHHH
Q 002697 406 WKDREAAV-LALGAIAE-GC-IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH-QNGREQFEKVL 481 (891)
Q Consensus 406 ~~~r~aa~-~~l~~l~~-~~-~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~l 481 (891)
|+...+.. .++.-+.. .. ...+..+++-++|.++..++|.++.+|..++.++..+...+...... -......+-+.
T Consensus 89 WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~ 168 (282)
T PF10521_consen 89 WKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFE 168 (282)
T ss_pred cccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHH
Confidence 66554322 33333333 22 24567889999999999999999999999999999999866532000 00111233444
Q ss_pred HHHHHHhc--------CCCHHHHHHHHHHHHHHHHHh----cccchHhHHHHH-HHHHHHHcccc----hhHHHHHHHHH
Q 002697 482 MGLLKRIL--------DTNKRVQEAACSAFATLEEEA----AEELAPRLEIIL-QHLMMAFGKYQ----RRNLRIVYDAI 544 (891)
Q Consensus 482 ~~l~~~l~--------d~~~~v~~~a~~al~~l~~~~----~~~~~~~l~~il-~~l~~~l~~~~----~~~~~~~~~al 544 (891)
+++..++. +.+..+-..+..++..++... ...-...+..++ +.++..+.... .+.....++.+
T Consensus 169 ~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l 248 (282)
T PF10521_consen 169 DALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQL 248 (282)
T ss_pred HHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHH
Confidence 45555554 445677788888888887753 112222333333 33555544332 33445778999
Q ss_pred HHHHHHhcccCCchhhhhhhhHHHHHHHHcC
Q 002697 545 GTLADAVGFELNQPVYLDILMPPLIAKWQQL 575 (891)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 575 (891)
..+++.+|.... .|+..++|.+.+.+.+.
T Consensus 249 ~~~i~~lGi~~~--~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 249 PPIIDELGISSV--KHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHhccHHH--HHHHHHHHHHHHHhcCC
Confidence 999999998877 89999999988876653
No 202
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=5.1 Score=44.97 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=127.7
Q ss_pred hHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhh-c-CChHHHHHHHHHHHHHHhhccc
Q 002697 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-A-ADRHIRSTVGTIVSVVVQLGGI 126 (891)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~-~-~~~~vr~~~a~~l~~i~~~~~~ 126 (891)
.+..|+.-..+ +.-.+-|..|+..||-.-++ |+. +.-..=.+.+++.|. | .++.+-+.+-..+..+..++
T Consensus 23 TI~kLcDRves--sTL~eDRR~A~rgLKa~srk-YR~---~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d-- 94 (970)
T KOG0946|consen 23 TIEKLCDRVES--STLLEDRRDAVRGLKAFSRK-YRE---EVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD-- 94 (970)
T ss_pred HHHHHHHHHhh--ccchhhHHHHHHHHHHHHHH-HHH---HHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC--
Confidence 34556665554 55678888898888754443 221 112222345666665 3 36677666666666666554
Q ss_pred CchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHH
Q 002697 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (891)
Q Consensus 127 ~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~ 206 (891)
..|+.+ .++. ..-..++..-..+.. -++.+..++.++..-+-.||..+++.+..
T Consensus 95 -d~~~v~-------dds~-qsdd~g~~iae~fik-----------------~qd~I~lll~~~e~~DF~VR~~aIqLlsa 148 (970)
T KOG0946|consen 95 -DSPEVM-------DDST-QSDDLGLWIAEQFIK-----------------NQDNITLLLQSLEEFDFHVRLYAIQLLSA 148 (970)
T ss_pred -cchhhc-------ccch-hhhHHHHHHHHHHHc-----------------CchhHHHHHHHHHhhchhhhhHHHHHHHH
Confidence 222221 1111 122222222211111 14567888889999999999999999999
Q ss_pred HhcccchhhHHhH---HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhh-HhHHHHHHHHHhhcCC---CCH-HH
Q 002697 207 FIMLMPSALFVSM---DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE-PHLRNLFEYMLQVNKD---TDD-DV 278 (891)
Q Consensus 207 ~~~~~~~~~~~~~---~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~-~~l~~l~~~~~~~~~~---~~~-~v 278 (891)
++...|......+ |.-+..+..++.|..+-+|..++-.|..++...+..-. --++.++..+...++. .|. -|
T Consensus 149 lls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIV 228 (970)
T KOG0946|consen 149 LLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIV 228 (970)
T ss_pred HHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 9998887665443 44466777778888888999999999999987764311 0123444444444432 233 36
Q ss_pred HHHHHHHHHHhhcc
Q 002697 279 ALEACEFWHSYFEA 292 (891)
Q Consensus 279 ~~~a~~~l~~l~~~ 292 (891)
...++-++..+.+.
T Consensus 229 veDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 229 VEDCLILLNNLLKN 242 (970)
T ss_pred HHHHHHHHHHHHhh
Confidence 67788888887776
No 203
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.55 E-value=0.34 Score=50.60 Aligned_cols=156 Identities=15% Similarity=0.243 Sum_probs=92.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHhhccCCchhh
Q 002697 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK---DTDDDVALEACEFWHSYFEAQLPHEN 298 (891)
Q Consensus 222 ~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~v~~~a~~~l~~l~~~~~~~~~ 298 (891)
|...+.+.+.+.+...|..++..|.. ++ -+.+.++.++.++..... +.+-..-...+.+..++..++. =.
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~t----D~-gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~--l~ 251 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRT----DP-GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN--LH 251 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcc----CC-CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC--Cc
Confidence 34444444444566777777666531 22 112222233333322211 1134444556777788877743 35
Q ss_pred HHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 002697 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (891)
Q Consensus 299 ~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l 378 (891)
+.+|+..++|.++.++....-. ... + ..+.|.+|..|+.++..+
T Consensus 252 le~Ylh~Lip~vltclv~~~l~--------------------------------~~~-~---~~~h~~LRd~AA~ll~~i 295 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLC--------------------------------SRP-P---DDNHWALRDYAARLLAQI 295 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhc--------------------------------CCC-C---CchHHHHHHHHHHHHHHH
Confidence 6899999999998877643210 000 0 123699999999999999
Q ss_pred HHHcCc---chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhh
Q 002697 379 SNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (891)
Q Consensus 379 ~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~ 421 (891)
+..++. .+.+.+...+.+.+.++.. ....+++|+..|..+..
T Consensus 296 ~~~f~~~y~~l~~ri~~tl~k~l~d~~~-~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 296 CRKFSTSYNTLQPRITRTLLKALLDPKK-PLTTHYGAIVGLSALGP 340 (343)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHcCCCC-CcchhhHHHHHHHHhCc
Confidence 999975 4456666666666655431 14558999998887753
No 204
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=5.4 Score=44.77 Aligned_cols=201 Identities=13% Similarity=0.095 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHcCcchhhhhHHHHHHhhc-cCCCcchHHHHHHHHHHHHHhhcc-----------hhhhhhhH----
Q 002697 368 RKCSAAALDVLSNVFGDEILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGC-----------IKGLYPHL---- 431 (891)
Q Consensus 368 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~r~aa~~~l~~l~~~~-----------~~~~~~~l---- 431 (891)
|+.|+..|..+++.+...+...-++.+.+.+. +..+ +..-..++-.+..+...- .+.+..++
T Consensus 40 RR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D--~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~f 117 (970)
T KOG0946|consen 40 RRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMD--PEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQF 117 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCC--HHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHH
Confidence 89999999999999865544333333333333 2222 666666666665554322 11122222
Q ss_pred ---HHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002697 432 ---SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (891)
Q Consensus 432 ---~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (891)
+..+..++..+..-+-.||.+++..++.+...-+.... +.--.++.-+..++..+.|....+|-.+...|..+.+
T Consensus 118 ik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q--~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 118 IKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQ--DALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVK 195 (970)
T ss_pred HcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHH--HHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHc
Confidence 22466677888888899999999999988776442100 0111233455667777888888899999999999988
Q ss_pred Hhcccc-hHhHHHHHHHHHHHHcccch-hHHHHHHHHHHHHHHHhcccCCchhhh--hhhhHHHHHHH
Q 002697 509 EAAEEL-APRLEIILQHLMMAFGKYQR-RNLRIVYDAIGTLADAVGFELNQPVYL--DILMPPLIAKW 572 (891)
Q Consensus 509 ~~~~~~-~~~l~~il~~l~~~l~~~~~-~~~~~~~~al~~l~~~~~~~~~~~~~~--~~l~~~l~~~l 572 (891)
.++..= .--+++++..|+.++..... +.-..+.+|+..+-.-......+..|+ ...+|.+...+
T Consensus 196 ~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL 263 (970)
T KOG0946|consen 196 DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLL 263 (970)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhc
Confidence 764321 12468889999999875431 211234455555544443332222233 23455554433
No 205
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=95.53 E-value=4.6 Score=43.90 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhh--------hh
Q 002697 674 DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI--------SP 745 (891)
Q Consensus 674 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~--------~~ 745 (891)
|..+-|.+..+..+|..-+....+ ..|+..++..+++.+... .+.++..||..+-.++.+++-+| .|
T Consensus 541 dnKAVvASnIMyvvGQYpRFLkah-w~FLkTVv~KLFEFMhE~----HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEp 615 (1053)
T COG5101 541 DNKAVVASNIMYVVGQYPRFLKAH-WSFLKTVVKKLFEFMHED----HEGVQDMACDTFIKIVQKCPVHFVTQQEGESEP 615 (1053)
T ss_pred CcchhhecceeeeeccchHHHHHH-HHHHHHHHHHHHHHHhhh----hhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCc
Confidence 333344444444455433333222 256777888888887776 78999999999999999887443 58
Q ss_pred HHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCC
Q 002697 746 IVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPE 785 (891)
Q Consensus 746 ~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 785 (891)
|+..|+..+-..-.+- ..........+.|.+++..|.
T Consensus 616 FI~~Iirnl~ktT~dL---~pqQ~htfYeAcg~vIse~p~ 652 (1053)
T COG5101 616 FIVYIIRNLPKTTGDL---EPQQKHTFYEACGMVISEVPK 652 (1053)
T ss_pred HHHHHHHhhhhhcccC---ChHHHhHHHHHHhHHHhccch
Confidence 8888887765543322 233334456666766665544
No 206
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.51 E-value=14 Score=49.27 Aligned_cols=91 Identities=20% Similarity=0.343 Sum_probs=69.6
Q ss_pred hhhhHHHHHHhhcC---------CCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002697 178 INIFLPRLLQFFQS---------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (891)
Q Consensus 178 ~~~l~~~l~~~l~~---------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l 248 (891)
+..++|.+++.+.. +..+.|..+++.+..+... +.+.++...++..++..+..+|++...-+++++..+
T Consensus 47 l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~--e~~~~~~~~~~~~~~~vl~~dNeen~~l~lkii~~l 124 (3550)
T KOG0889|consen 47 LEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHN--EVFKPFSQELLKVLMRVLTNDNEENAILCLKIITDL 124 (3550)
T ss_pred HHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHH
Confidence 57788888888865 2347899999999988643 457777788888888888888888888888999888
Q ss_pred HhhChhhhhHhHHHHHHHHHhh
Q 002697 249 IEVRPSFLEPHLRNLFEYMLQV 270 (891)
Q Consensus 249 ~~~~~~~~~~~l~~l~~~~~~~ 270 (891)
...+...+..++..++..+.+.
T Consensus 125 ~r~f~~~~~~~v~~fl~~V~~l 146 (3550)
T KOG0889|consen 125 FRQFKSLVEQHVQPFLDIVIDL 146 (3550)
T ss_pred HHhhchHHHHHHHHHHHHHHHH
Confidence 8877777776666666665544
No 207
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=95.30 E-value=1.4 Score=39.58 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=84.0
Q ss_pred HHHHhHhhhhhcC--ChHHHHHHHHHHHHHHhh---cccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHH-hhchhcc
Q 002697 93 YIKSELLPCLGAA--DRHIRSTVGTIVSVVVQL---GGIAGWLELLQALVTCLDSNDINHMEGAMDALSKIC-EDIPQVL 166 (891)
Q Consensus 93 ~i~~~ll~~L~~~--~~~vr~~~a~~l~~i~~~---~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~-~~~~~~~ 166 (891)
.||..++.+|... ....-+.++.+++.++.. ...+.|++|...+..... .++ ..|+.++..+. ...++.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~-~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSE-NEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhc-cch---HHHHHHHHhCCchhhhhHH
Confidence 4778888888743 223334445555555443 257899999988877552 222 34666665555 2222221
Q ss_pred ccCCCCCCCcchhhhHHHHHHhhcCC---CHHHHHHHHH-HHHHHhcccc-----hhhHHhHHHHHHHHHHhhCCCCH-H
Q 002697 167 DSDVPGLAECPINIFLPRLLQFFQSP---HTSLRKLSLG-SVNQFIMLMP-----SALFVSMDQYLQGLFLLSNDPSA-E 236 (891)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~vr~~al~-~l~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~~~~-~ 236 (891)
.+.++.++|.+.+.|.+| +.+....|+. ++...+.... +.+.+.++.++..+..+.+...+ .
T Consensus 79 --------~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~ 150 (174)
T PF04510_consen 79 --------IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVG 150 (174)
T ss_pred --------HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 245678899999999887 3343444543 3344443322 22334445556666666665544 5
Q ss_pred HHHHHHHHHHHHHhh
Q 002697 237 VRKLVCAAFNLLIEV 251 (891)
Q Consensus 237 v~~~~~~~l~~l~~~ 251 (891)
.-..+++-+..+...
T Consensus 151 ~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 151 FLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555543
No 208
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=95.23 E-value=7.6 Score=44.51 Aligned_cols=78 Identities=17% Similarity=0.095 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHc----ccchh-HHHHHHHHHHHH
Q 002697 474 REQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG----KYQRR-NLRIVYDAIGTL 547 (891)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~----~~~~~-~~~~~~~al~~l 547 (891)
....++++-.+++.+...+ ..-|...+.++++++...++.+.|....+++.+.++.. ++..+ .....++.++.+
T Consensus 528 ~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al 607 (947)
T COG5657 528 IGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGAL 607 (947)
T ss_pred cccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 3345677767777776654 45688999999999988888888877777776666653 22222 244667777777
Q ss_pred HHHh
Q 002697 548 ADAV 551 (891)
Q Consensus 548 ~~~~ 551 (891)
+...
T Consensus 608 ~~~~ 611 (947)
T COG5657 608 VFLK 611 (947)
T ss_pred HHhh
Confidence 7643
No 209
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.22 E-value=3.5 Score=44.80 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=59.3
Q ss_pred ccccHHHHHHHHHHHHHHHcCcchhhhhHH-HHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhh-hhHHHHHHHHhh
Q 002697 363 NVWNLRKCSAAALDVLSNVFGDEILPTLMP-VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIP 440 (891)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~-~~l~~i~~~l~~ 440 (891)
..++.|..|+.+|+.++..++......+.. .+..++++.. -..|..|.+++...+......-. +..+.+.+.+..
T Consensus 99 ~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~s---a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 99 VVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPS---ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 346789999999999999998776666665 6888999988 88999999999998876653211 113445556666
Q ss_pred hcCCC
Q 002697 441 LLDDK 445 (891)
Q Consensus 441 ~l~d~ 445 (891)
.|.++
T Consensus 176 ~L~~~ 180 (441)
T PF12054_consen 176 ILENP 180 (441)
T ss_pred HHcCC
Confidence 66644
No 210
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.21 E-value=2.2 Score=47.41 Aligned_cols=249 Identities=15% Similarity=0.135 Sum_probs=142.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhcCCCh--HHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhh-
Q 002697 15 NEICRLLEQQISPSSTADKSQIWQQLQQ-YSQFPDF--NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN- 90 (891)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~-~~~~p~~--~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~- 90 (891)
.++.+.|...++.+.. +|-....-+.. |..+|.. +.+|-.+... ++. + =..++|. +.+.|..++...
T Consensus 239 ~el~~~l~k~l~~~~~-~rp~~~~l~~~~ff~D~~~~aLrfLD~l~~k----dn~-q--Ks~Flk~-Ls~~ip~fp~rv~ 309 (700)
T KOG2137|consen 239 SELRESLKKLLNGDSA-VRPTLDLLLSIPFFSDPGLKALRFLDDLPQK----DNS-Q--KSSFLKG-LSKLIPTFPARVL 309 (700)
T ss_pred HHHHHHHHHHhcCCcc-cCcchhhhhcccccCCchhhhhhhccccccc----CcH-H--HHHHHHH-HHHhhccCCHHHH
Confidence 4678888888899888 88833333333 3334432 3344444331 111 1 1234444 677888888754
Q ss_pred HHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhccc-CchHHHHHHHHHHhccCC-hhHHhHHHHHHHHHHhhchhcccc
Q 002697 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSND-INHMEGAMDALSKICEDIPQVLDS 168 (891)
Q Consensus 91 ~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~L~~~l~~~~-~~~r~~al~~L~~l~~~~~~~~~~ 168 (891)
...+...+...|... ...-..--++-.|+..... ..-+.++|.|...++..+ ...+-.-++=+..|.+....
T Consensus 310 ~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~---- 383 (700)
T KOG2137|consen 310 FQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPP---- 383 (700)
T ss_pred HHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCCh----
Confidence 344555555544322 1101111123333333322 334678888888877433 23332222223333343332
Q ss_pred CCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHh-hCCCCHHHHHHHHHHHHH
Q 002697 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLL-SNDPSAEVRKLVCAAFNL 247 (891)
Q Consensus 169 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~v~~~~~~~l~~ 247 (891)
+.....++|.|+..+.+.+..++..+++.+..+.+.++-.+.. +.+++.+..+ ....+..++..++.|+..
T Consensus 384 ------e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk--~~ilP~l~~l~~~tt~~~vkvn~L~c~~~ 455 (700)
T KOG2137|consen 384 ------EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK--QAILPRLKNLAFKTTNLYVKVNVLPCLAG 455 (700)
T ss_pred ------HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH--HHHHHHhhcchhcccchHHHHHHHHHHHH
Confidence 2345789999999999999999999999999999887644332 2345655554 345677899999999999
Q ss_pred HHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 002697 248 LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (891)
Q Consensus 248 l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l 289 (891)
+++..... ..+ +.+..+.++++..|+.+....+.....+
T Consensus 456 l~q~lD~~--~v~-d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 456 LIQRLDKA--AVL-DELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred HHHHHHHH--HhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 88543322 122 3444556667777777766655554443
No 211
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.18 E-value=0.1 Score=47.12 Aligned_cols=92 Identities=16% Similarity=0.206 Sum_probs=69.9
Q ss_pred chhhhHHHHHHhhc------------------CCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHH
Q 002697 177 PINIFLPRLLQFFQ------------------SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVR 238 (891)
Q Consensus 177 ~~~~l~~~l~~~l~------------------~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~ 238 (891)
.++.++|.++.-.. |.+-++|++|.+|+..++........ +..|+..+...+.| +.+++
T Consensus 6 ~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~DIk 82 (169)
T PF08623_consen 6 HLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EHDIK 82 (169)
T ss_dssp THHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHH
T ss_pred HHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cHHHH
Confidence 45777777776543 23568999999999999886554432 55668888888888 89999
Q ss_pred HHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhc
Q 002697 239 KLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN 271 (891)
Q Consensus 239 ~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~ 271 (891)
..++..+..++...|..+...++.+++.+...+
T Consensus 83 ~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 83 MLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988888887777765544
No 212
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.14 E-value=0.39 Score=48.83 Aligned_cols=146 Identities=14% Similarity=0.191 Sum_probs=97.5
Q ss_pred cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccc----hH--hHHHHHHHHHHHHc--------ccchhHH
Q 002697 472 NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL----AP--RLEIILQHLMMAFG--------KYQRRNL 537 (891)
Q Consensus 472 ~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~----~~--~l~~il~~l~~~l~--------~~~~~~~ 537 (891)
....++.-++|.++..++|.++.+|..+|.++..+++.+.... .. ..+-+.+.+..++- +.+....
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 4677889999999999999999999999999999999874332 22 23444444555554 2333456
Q ss_pred HHHHHHHHHHHHHhcccCC--chhhhhhhh-HHHHHHHHcCCC-CCcch-HhHHHHHHHHHHHhccccccchHHHHHHHH
Q 002697 538 RIVYDAIGTLADAVGFELN--QPVYLDILM-PPLIAKWQQLPN-SDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCI 612 (891)
Q Consensus 538 ~~~~~al~~l~~~~~~~~~--~~~~~~~l~-~~l~~~l~~~~~-~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~ 612 (891)
..++.|+-.++......-. ....+..++ ..++..+..... ..+.+ ...++.+..+...+|.....|+..+++.+.
T Consensus 192 ~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 192 QAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6889999998886432211 112222322 224333333321 12334 567888899999999999999999999887
Q ss_pred HHHHH
Q 002697 613 NIIQT 617 (891)
Q Consensus 613 ~~l~~ 617 (891)
+++.+
T Consensus 272 ~~l~n 276 (282)
T PF10521_consen 272 QILEN 276 (282)
T ss_pred HHhcC
Confidence 76663
No 213
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.11 E-value=6.8 Score=43.29 Aligned_cols=288 Identities=14% Similarity=0.104 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCC-hhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHH
Q 002697 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND-INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ 187 (891)
Q Consensus 109 vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~-~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 187 (891)
-|-.++.-++......+...-+++......++..+. .+.|+.++..|..+++.-..... ..=..+++
T Consensus 6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~------------~~R~~fF~ 73 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG------------LMRAEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH------------HHHHHHHH
Confidence 466666666666666655555666666666665553 47899999999888885443111 01122333
Q ss_pred hhcC----CCHHHHHHHHHHHHHHhccc---chhhHHhHHHHHHHHHHhhC--------------------CCCHHHHHH
Q 002697 188 FFQS----PHTSLRKLSLGSVNQFIMLM---PSALFVSMDQYLQGLFLLSN--------------------DPSAEVRKL 240 (891)
Q Consensus 188 ~l~~----~~~~vr~~al~~l~~~~~~~---~~~~~~~~~~~l~~l~~~~~--------------------~~~~~v~~~ 240 (891)
.+.+ ++-..|..|+.+|+.=...+ ..++.+.+..++..+++... +.+......
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD 153 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence 3333 23456777777776654433 22344445555555552110 012233345
Q ss_pred HHHHHHHHHhhChhhhh-HhHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCCh
Q 002697 241 VCAAFNLLIEVRPSFLE-PHLRNLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYAD 318 (891)
Q Consensus 241 ~~~~l~~l~~~~~~~~~-~~l~~l~~~~~~~-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~ 318 (891)
.+..+..++......+. ..+..++..+... .+...++.-..+++++-+++.+...+ ...+..++..|-......
T Consensus 154 ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP---~~sl~~~i~vLCsi~~~~- 229 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP---SESLSPCIEVLCSIVNSV- 229 (464)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC---hHHHHHHHHHHhhHhccc-
Confidence 56666666665554444 3455556555544 33333333466788888777652222 122334444332221110
Q ss_pred hhhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHH-cCcchhhhhHHHHHHh
Q 002697 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV-FGDEILPTLMPVIQAK 397 (891)
Q Consensus 319 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~-~~~~~~~~l~~~l~~~ 397 (891)
+..+.+-.++..|+.. .|...+..+..++..
T Consensus 230 -----------------------------------------------~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~- 261 (464)
T PF11864_consen 230 -----------------------------------------------SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRS- 261 (464)
T ss_pred -----------------------------------------------ccchhHHHHHHHHHcCccHHHHHHHHHHHHcc-
Confidence 1223344455555532 344444444444310
Q ss_pred hccC-CCcchHHHHHHHHHHHHHhhcchhhhhh----hHHHHHHHHhhhcCCCChHHHHHHHHHHHhhH
Q 002697 398 LSAS-GDEAWKDREAAVLALGAIAEGCIKGLYP----HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (891)
Q Consensus 398 l~~~-~~~~~~~r~aa~~~l~~l~~~~~~~~~~----~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~ 461 (891)
.++ ...+...-.+|+..++.+.-+..+.-.+ ....+++.+...++.+++.|-.....++.++.
T Consensus 262 -~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 262 -PDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred -cCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 111 1122666779999999887766322111 12248888888888888877777666666665
No 214
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.00 E-value=1.5 Score=48.80 Aligned_cols=220 Identities=17% Similarity=0.190 Sum_probs=133.4
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhh--c---------CChHHHHHHHHHHHHH
Q 002697 52 YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG--A---------ADRHIRSTVGTIVSVV 120 (891)
Q Consensus 52 ~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~--~---------~~~~vr~~~a~~l~~i 120 (891)
++..++++ .+.+.++--.|...||+.-.. |+. ..+.+.|+.+.. . .++.+|..+-..+
T Consensus 239 ~~~~liAs-ad~~~~V~~~ae~~LKr~~~~-~ed------~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L--- 307 (501)
T PF13001_consen 239 FPPLLIAS-ADSNSSVSDRAEDLLKRLSVS-LED------PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLL--- 307 (501)
T ss_pred HhheeeEE-eCCcchHHHHHHHHHhhcCCC-CCC------HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHH---
Confidence 33444443 256678888898888776444 542 233344444332 1 2556666644433
Q ss_pred Hhhc-ccCchHHHHHHHHHHhccC--ChhHHhHHHHHH---HHHHhhchhccccCCCCCCCcchhhhHHHHHHhhc----
Q 002697 121 VQLG-GIAGWLELLQALVTCLDSN--DINHMEGAMDAL---SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ---- 190 (891)
Q Consensus 121 ~~~~-~~~~w~~ll~~L~~~l~~~--~~~~r~~al~~L---~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~---- 190 (891)
.+.. -....|..+..+...+.++ +...|..++..+ ...+..++...-. ...+.++....+.++
T Consensus 308 ~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-------~l~~~i~~~g~p~~~~~~~ 380 (501)
T PF13001_consen 308 SKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILK-------LLRPVILSQGWPLIQDSSS 380 (501)
T ss_pred HHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHH-------HHHHHHHhcCccccccccc
Confidence 3332 2345678888888888877 567777888888 6666665543211 111223333333342
Q ss_pred ----CCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhh-H--hHHHH
Q 002697 191 ----SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE-P--HLRNL 263 (891)
Q Consensus 191 ----~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~-~--~l~~l 263 (891)
..+...|..+.++++.+....|..+...+ .++..+|..+.++.+++|..+-++|..++..+...-. . .....
T Consensus 381 ~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~ 459 (501)
T PF13001_consen 381 QSNSSEDIELRSLAYETLGLLAKRAPSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLL 459 (501)
T ss_pred cCCCcccHHHHHHHHHHHHHHHccCcccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 23668999999999999998887664443 4578888888888899999999999999887665433 1 11222
Q ss_pred HHHHHh-hcCCCCHHHHHHHHHHHHHhh
Q 002697 264 FEYMLQ-VNKDTDDDVALEACEFWHSYF 290 (891)
Q Consensus 264 ~~~~~~-~~~~~~~~v~~~a~~~l~~l~ 290 (891)
...++. ...+....+|..|+.+...+.
T Consensus 460 ~~~l~~~~~~~~~~~~R~~avk~an~~f 487 (501)
T PF13001_consen 460 LELLLLSYIQSEVRSCRYAAVKYANACF 487 (501)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhC
Confidence 222222 233445567777777665553
No 215
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.99 E-value=3.2 Score=42.23 Aligned_cols=164 Identities=12% Similarity=0.066 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHhc--c---ccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhh-HHh
Q 002697 584 PLLECFTSIAQALG--A---GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSG-IES 657 (891)
Q Consensus 584 ~~~~~l~~i~~~~~--~---~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~-~~~ 657 (891)
..+.+++.+.+++. . .+.|+-..+..++.++|+... -..+-..|++++..+.+.+|.. +..
T Consensus 27 D~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~L-------------PsGVH~KaLevY~~IF~~ig~~~L~~ 93 (307)
T PF04118_consen 27 DYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPAL-------------PSGVHQKALEVYEYIFERIGPDGLAQ 93 (307)
T ss_pred HHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCC-------------ChHHHHHHHHHHHHHHHhcCHHHHHh
Confidence 34455555555554 1 345565667777777766432 2244567899999999988875 222
Q ss_pred hhcc--chHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHH
Q 002697 658 LVAQ--SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGEL 735 (891)
Q Consensus 658 ~~~~--~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l 735 (891)
-++- +.++|++. ...-.||-.-+.++....-..+..+.|.++.++..+...++++ +.++-+.+...+..+
T Consensus 94 dl~i~~~GLfpl~~----~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede----~sE~~~~~~~ll~~l 165 (307)
T PF04118_consen 94 DLPIYSPGLFPLFS----YASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDE----GSEFFDRTLKLLDKL 165 (307)
T ss_pred hcHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccC----CchHHHHHHHHHHHH
Confidence 2211 23555553 4456788889999998888888889999999999999999987 567778888888888
Q ss_pred HHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhh
Q 002697 736 AVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGR 778 (891)
Q Consensus 736 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~ 778 (891)
....+.. -|+ +.+.-.+-++ +..|..+...+.+
T Consensus 166 ~~~v~~~--~F~----~~lwl~ii~s----p~~Rl~al~~l~~ 198 (307)
T PF04118_consen 166 KEAVGDK--YFW----QCLWLCIITS----PSRRLGALNYLLR 198 (307)
T ss_pred HHhcChh--HHH----HHHHHHHhcC----cchhHHHHHHHHH
Confidence 8776654 123 3333333332 4566665555443
No 216
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=94.97 E-value=0.56 Score=38.99 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=70.8
Q ss_pred hhhhhhHHHHHHHHhhhcCCCC---h-HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHH
Q 002697 425 KGLYPHLSEIVAFLIPLLDDKF---P-LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAAC 500 (891)
Q Consensus 425 ~~~~~~l~~i~~~l~~~l~d~~---~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~ 500 (891)
+++.+++-.++..+-..++|.+ | .-|..+..+++.+.+...+. ......+++..|...+.. +..|..|+
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~-----i~~a~pQI~acL~saL~~--~eL~~~al 75 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKH-----ISSALPQIMACLQSALEI--PELRSLAL 75 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCc--hhHHHHHH
Confidence 3456666677777777788776 3 45888999999999866543 555666777777777764 56999999
Q ss_pred HHHHHHHHHh-cccchHhHHHHHHHHHHH
Q 002697 501 SAFATLEEEA-AEELAPRLEIILQHLMMA 528 (891)
Q Consensus 501 ~al~~l~~~~-~~~~~~~l~~il~~l~~~ 528 (891)
.+...++... .+.+.|.++.++..+...
T Consensus 76 ~~W~~~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 76 RCWHVLIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 9999999987 455667677666655543
No 217
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=9.6 Score=44.06 Aligned_cols=163 Identities=14% Similarity=0.042 Sum_probs=93.5
Q ss_pred HHHhcCCChHHHHHHHHHHhHHHH---hchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhh-h
Q 002697 669 LQCCMDDASDVRQSAFALLGDLAR---VCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI-S 744 (891)
Q Consensus 669 ~~~~~~~~~~vr~~a~~~l~~l~~---~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~-~ 744 (891)
...+++++-.+|-.++.++..... ..++.+.|.+....|.++.++... ++-+-..|+.++..++.+.|+-+ .
T Consensus 809 ~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k----~~L~v~~a~~~i~~m~~~sgDFv~s 884 (1014)
T KOG4524|consen 809 IHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCK----DPLIVQRAFSCIEQMGKYSGDFVAS 884 (1014)
T ss_pred HHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcC----chHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344667788888888888875444 445778899999999999999988 77888999999999998887432 2
Q ss_pred hHHHHHHHHHHHHhcCCh--hhhhhHH-HhHHHHH-hhhhhhcCCcc------CcchhHHHHHHHhhccCCCCchHHHHH
Q 002697 745 PIVMTVVLCLVPILKHSE--ELNKSLI-ENSAITL-GRLAWVCPELV------SPHMEHFMQPWCIALSMIRDDTEKEDA 814 (891)
Q Consensus 745 ~~~~~il~~l~~~l~~~~--~~~~~~~-~~~~~~l-~~l~~~~~~~~------~~~~~~~l~~~~~~l~~~~~~~e~~~~ 814 (891)
.++..+++.+-..+.+.. ...+..+ +.+.-=+ -+++...++.+ ...++.+.....-.+....+..-...+
T Consensus 885 R~l~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l~~~~l~~v~e~~~I~l~~~~~q~Lqe~~ 964 (1014)
T KOG4524|consen 885 RFLEDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLELAGVSLHMVAEGVKIYLSLIQPQVLQEIA 964 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeecccccHHHHhhhhhhhHHhcChHHHHHHH
Confidence 334444444433332221 0011222 1111111 11111122111 123556666666666665544335566
Q ss_pred HHHHHHHHhhCh-hhhHhhHHH
Q 002697 815 FRGLCAMVKANP-SGALSSLVF 835 (891)
Q Consensus 815 ~~~l~~l~~~~~-~~~~~~l~~ 835 (891)
+..|..++.-.+ ..+.+..++
T Consensus 965 ~s~F~~~V~~ekp~~i~~~~~~ 986 (1014)
T KOG4524|consen 965 RSCFLDLVPVEKPQRISSMSLR 986 (1014)
T ss_pred HHHHHHHhccCCCcccchhhhh
Confidence 666776666543 334444333
No 218
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.59 Score=49.66 Aligned_cols=158 Identities=16% Similarity=0.170 Sum_probs=100.1
Q ss_pred hHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhh-hhhcCChHHHHHHHHHHHHHHhhcccC
Q 002697 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP-CLGAADRHIRSTVGTIVSVVVQLGGIA 127 (891)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~-~L~~~~~~vr~~~a~~l~~i~~~~~~~ 127 (891)
+-.++-+++. +.++-.|..+...+.-..... ....+...++. ...+.+..||+++..+++-++-.+
T Consensus 517 add~I~ell~---d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--- 583 (926)
T COG5116 517 ADDYINELLY---DKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--- 583 (926)
T ss_pred HHHHHHHHhc---CchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecC---
Confidence 3334444443 456666766554432211110 11233445555 477889999998887777666544
Q ss_pred chHHHHHHHHHHhc-cCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHH
Q 002697 128 GWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (891)
Q Consensus 128 ~w~~ll~~L~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~ 206 (891)
+++++...+.+. +-|+.+|.+..-+|+..|..-+. +.-+..+-.+..++..-||..|+-+++-
T Consensus 584 --~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~--------------~~a~diL~~L~~D~~dfVRQ~AmIa~~m 647 (926)
T COG5116 584 --RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD--------------KVATDILEALMYDTNDFVRQSAMIAVGM 647 (926)
T ss_pred --cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc--------------HHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 455555555554 45889999999999888775443 2234445555678888999999999988
Q ss_pred HhcccchhhHHhHHHHHHHHHHhhCCCCH
Q 002697 207 FIMLMPSALFVSMDQYLQGLFLLSNDPSA 235 (891)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 235 (891)
++....+.+.+....+...+.+.+.+..+
T Consensus 648 Il~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 648 ILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred HHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 88776666777777777766666655443
No 219
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.67 E-value=0.33 Score=39.15 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=63.0
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhh
Q 002697 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (891)
Q Consensus 181 l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~ 257 (891)
.+...+..++|+.+.+|..++..|..++.... ......+.++..+...+.|+++-+--.|+++|..++..+|+.+-
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl 79 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVL 79 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHH
Confidence 46677788899999999999999999997755 23344577788888899999999999999999999999887443
No 220
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.56 E-value=6.8 Score=40.70 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=66.2
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCC-CcCchhHhhhHHHHHHHHHHhch
Q 002697 662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPK-LKETVSVANNACWAIGELAVKAR 740 (891)
Q Consensus 662 ~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~~~v~~~a~~alg~l~~~~~ 740 (891)
|.++..+..++.+++.+....+.-++|++++.-...+.=.-.+++..++.++..++ .+++..+.-+++.|+-.++.-.+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 56999999999999999888899999999987542221111345555555554422 22356666778888887764322
Q ss_pred --hhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhh
Q 002697 741 --QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRL 779 (891)
Q Consensus 741 --~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l 779 (891)
..|.|. .+.+.+++.+.... +.+.....+++..+
T Consensus 394 nka~~~~a--GvteaIL~~lk~~~---ppv~fkllgTlrM~ 429 (604)
T KOG4500|consen 394 NKAHFAPA--GVTEAILLQLKLAS---PPVTFKLLGTLRMI 429 (604)
T ss_pred chhhcccc--chHHHHHHHHHhcC---CcchHHHHHHHHHH
Confidence 334332 23344445554432 34444444444333
No 221
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.52 E-value=0.8 Score=50.47 Aligned_cols=170 Identities=14% Similarity=0.119 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHcCc-chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCC
Q 002697 367 LRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK 445 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~ 445 (891)
+|..-.+-+......+.+ .+-..++|.+...+.+.+ ...|+-++.++..++....+. ..=.+++.++...-.|.
T Consensus 346 iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn---~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~ 420 (690)
T KOG1243|consen 346 IRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTN---ATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDE 420 (690)
T ss_pred HHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCC---HHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccc
Confidence 677777777777777765 455788999999999998 999999999999998765543 22235666666666699
Q ss_pred ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHH
Q 002697 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK-VLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQH 524 (891)
Q Consensus 446 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~ 524 (891)
++.+|.-.-.|+|+++.++... . -.. +.......+.|+-..-|.++..++....+... ....-..|++.
T Consensus 421 ~~~irtntticlgki~~~l~~~-----~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~--~~~va~kIlp~ 490 (690)
T KOG1243|consen 421 HGGIRTNTTICLGKIAPHLAAS-----V---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD--QSEVANKILPS 490 (690)
T ss_pred cCcccccceeeecccccccchh-----h---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc--hhhhhhhcccc
Confidence 9999999999999999876432 1 122 22334445778777778888888775544321 12223456666
Q ss_pred HHHHHcccchhHHHHHHHHHHHHHHHh
Q 002697 525 LMMAFGKYQRRNLRIVYDAIGTLADAV 551 (891)
Q Consensus 525 l~~~l~~~~~~~~~~~~~al~~l~~~~ 551 (891)
+.....+.+..++..+..++..+....
T Consensus 491 l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 491 LVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred ccccccCcccchhhHHHHHHHHHHhhh
Confidence 666555666666667776666555443
No 222
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.47 Score=50.39 Aligned_cols=113 Identities=21% Similarity=0.198 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC-CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHH
Q 002697 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 484 (891)
-.+|.+|+.++|-++-.-. ..++..+..|. +-++.||...+.+||-.+..- ..+..-.++..
T Consensus 566 DDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~--------G~~~a~diL~~- 628 (926)
T COG5116 566 DDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGT--------GDKVATDILEA- 628 (926)
T ss_pred hHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCC--------ccHHHHHHHHH-
Confidence 6677777777665432111 12333333343 456788888888888766532 22223334444
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHH
Q 002697 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNL 537 (891)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~ 537 (891)
.+.|++.-||..||-+++-+.-.+.+.+.|.+..|...+.+.+.+......
T Consensus 629 --L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~gl 679 (926)
T COG5116 629 --LMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHESGL 679 (926)
T ss_pred --HhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHhHH
Confidence 345888899999999999999999999999999999999888876655443
No 223
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=0.82 Score=46.98 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=95.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh-hChhhhhHhH
Q 002697 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE-VRPSFLEPHL 260 (891)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~-~~~~~~~~~l 260 (891)
+..++.-+.+-+..+|..|+..+..++...|.....+...+++.+..+..|.+..+|....+.+..++. ..++.+.+++
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 455666778899999999999999999887887877888888888888889999999999999877543 4566678899
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 002697 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (891)
Q Consensus 261 ~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (891)
.-+++++...|.+.-+++|..++.|+.-+.+.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~ 171 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLER 171 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999888776
No 224
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.39 E-value=1.9 Score=44.60 Aligned_cols=184 Identities=14% Similarity=0.216 Sum_probs=105.9
Q ss_pred CCCHHHHHHHHHHHHHhHHhhhccCChhhHHH-------HHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccC---chHH
Q 002697 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY-------IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---GWLE 131 (891)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~-------i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~---~w~~ 131 (891)
..+.+.|.-++..+.+.+++.-..-.....++ +...|+.+-. ++.+--.++.++...++.+.-. -+++
T Consensus 87 ~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~l~~~iL~~~ 164 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHESLAKIILYSE 164 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHHHHHHHHTSG
T ss_pred hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHHHHHHHhCcH
Confidence 45677888777777776665433321011222 2333333333 4444455666666665543100 0011
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhccc
Q 002697 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (891)
Q Consensus 132 ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (891)
.+..+.+.+..++=++-.-|+.++..+...-..... +++....+.++..+.+++.+++.-.|..+++.|+.++..-
T Consensus 165 ~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a----~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr 240 (335)
T PF08569_consen 165 CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVA----EFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDR 240 (335)
T ss_dssp GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHH----HHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHH----HHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHch
Confidence 223355666777767777777777766554322111 1123445778888888999999999999999999998542
Q ss_pred c--hhhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002697 212 P--SALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (891)
Q Consensus 212 ~--~~~~~~~--~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~ 251 (891)
. ..+..++ +..+..+..++.|++..++-.|+.++--++.+
T Consensus 241 ~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 241 SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 2 1122332 34578888889999999999999988766654
No 225
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.31 E-value=9.3 Score=41.27 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=58.4
Q ss_pred HHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhh--HHHHhhhhCCCcchhhHHHHHHHHHHHhcCC
Q 002697 415 ALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF--SKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (891)
Q Consensus 415 ~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~ 491 (891)
-+..+.+.+. ..+......++..+..+++++|..|-.+|+..+.+= ...+ ..+...+++.++..+...
T Consensus 278 el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li---------~~~~~~i~p~i~~~L~~~ 348 (409)
T PF01603_consen 278 ELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI---------SQNSRVILPIIFPALYRN 348 (409)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH---------HCTHHHHHHHHHHHHSST
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH---------HhChHHHHHHHHHHHHHH
Confidence 3444555443 455677788899999999999999999988776532 3322 344456677777666431
Q ss_pred -----CHHHHHHHHHHHHHHHHH
Q 002697 492 -----NKRVQEAACSAFATLEEE 509 (891)
Q Consensus 492 -----~~~v~~~a~~al~~l~~~ 509 (891)
+..||..|+.++..+.+.
T Consensus 349 ~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 349 SKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp TSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHh
Confidence 467999999998877663
No 226
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=94.31 E-value=0.08 Score=42.15 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHhhChhhhHhhHHHHhhHhhcccccCchhHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHHhh
Q 002697 809 TEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLS 887 (891)
Q Consensus 809 ~e~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 887 (891)
.++-.++.||+.++...|-.+-+.+|.++..++++.+. ..-++..+++.+..|++.+-+ .|...-..|.++....|+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D-~W~~~~~~Ft~~ql~~l~ 80 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD-TWHEHKKKFTEDQLEDLE 80 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST-THHHHGGG--SSTTGGGS
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc-cHHHHHHhCCHHHHHHHH
Confidence 35668899999999999999989999999999998764 334889999999999999985 998777778777766664
No 227
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.25 E-value=0.6 Score=37.63 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=64.5
Q ss_pred HHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCc
Q 002697 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (891)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 472 (891)
.....+.++. ..+|-.|+..|..+.+.-. ......+.++..+...++|+++.|--.|+.++..++...+
T Consensus 7 ~al~~L~dp~---~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p------- 75 (92)
T PF10363_consen 7 EALSDLNDPL---PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP------- 75 (92)
T ss_pred HHHHHccCCC---cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-------
Confidence 3445566777 8899999999999988655 2345678899999999999999999999999999998765
Q ss_pred chhhHHHHHHHHHHHhcCC
Q 002697 473 GREQFEKVLMGLLKRILDT 491 (891)
Q Consensus 473 ~~~~~~~~l~~l~~~l~d~ 491 (891)
..+++.+++...+.
T Consensus 76 -----~~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 76 -----DEVLPILLDEYADP 89 (92)
T ss_pred -----HHHHHHHHHHHhCc
Confidence 24666666655543
No 228
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=18 Score=44.36 Aligned_cols=183 Identities=9% Similarity=0.029 Sum_probs=99.3
Q ss_pred HHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCch-----hH-hhhHHHHHHHHHHhchhh---------h-----
Q 002697 684 FALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETV-----SV-ANNACWAIGELAVKARQE---------I----- 743 (891)
Q Consensus 684 ~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~-----~v-~~~a~~alg~l~~~~~~~---------~----- 743 (891)
+.+...+......-+.||+..++......|..-+..... .+ -..-.|.+|.++.++-.+ |
T Consensus 1416 y~f~~~l~esl~si~~pYf~~~l~~~~~~L~k~n~s~~~~~~~~~~~~~r~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r 1495 (1621)
T KOG1837|consen 1416 YHFADYLQESLKSIVTPYFGYLLEPRVILLKKINASKHRWFWLLPVNQSRKPLLLGTLVLNCLKDLFLFDTIESFVTKSR 1495 (1621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHhhhhhHHHHhhhh
Confidence 344455666666778899887777666665543211000 00 011445666665443211 1
Q ss_pred -hhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 002697 744 -SPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMV 822 (891)
Q Consensus 744 -~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~ 822 (891)
.-....++.++....-... ....+...++.++++.....++.. ..+....+..... +.--.|-.++..+..++
T Consensus 1496 ~~~~~~p~v~ql~n~~~e~~-~~~~v~~~li~~i~~~~~a~~~d~----~pl~~k~l~~trs-s~~~~r~~ai~~~~~l~ 1569 (1621)
T KOG1837|consen 1496 FELLSYPLVSQLVNVLLEFY-ASDIVSKLLIAEIASDSVADKDDL----KPLNQKILKKTRS-SSRKARYLAIIQVKLLY 1569 (1621)
T ss_pred hhhhhhhhHHHHHHhhccch-hhhHHHHHHHHHHHhhccCChhhh----HHHHHHHHHHhcc-ccHHHHHHHHHHHHHHH
Confidence 0011222223333222221 123455667777888777666543 3344444433322 12234556666666666
Q ss_pred hhChhhhHhhHHHHhhHhhcccccCchhHHHHHHHHHHHHHhhcChhhHHH
Q 002697 823 KANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQ 873 (891)
Q Consensus 823 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 873 (891)
..-.....+.+|.++.-++.-.+...+++...+..++..+-..+|+ .|+.
T Consensus 1570 ~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE-~l~~ 1619 (1621)
T KOG1837|consen 1570 TKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE-PLQS 1619 (1621)
T ss_pred HHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch-hhhh
Confidence 6666667777777777777654455667888888888888888896 4443
No 229
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=6.8 Score=47.92 Aligned_cols=112 Identities=20% Similarity=0.144 Sum_probs=89.0
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccch-hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhH
Q 002697 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (891)
Q Consensus 180 ~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~ 258 (891)
.-+..+++-+...++..+..|+..+..++..... ....-++.+...+.+++.|.+..||.....++..+.....+.+.|
T Consensus 41 sel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp 120 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSP 120 (1312)
T ss_pred HHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3356677777888999999999999999865432 233335555666666788899999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 002697 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (891)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~ 291 (891)
|+..+++..+-...+.+..|...|...+.....
T Consensus 121 ~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 121 FLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HHHhhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 999999999888888888888888776666543
No 230
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.18 E-value=6.3 Score=38.79 Aligned_cols=190 Identities=16% Similarity=0.057 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCC-ChHHHHHHHhhcc-CCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhh----
Q 002697 27 PSSTADKSQIWQQLQQYSQFP-DFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP---- 100 (891)
Q Consensus 27 ~d~~~~r~~a~~~L~~~~~~p-~~~~~l~~il~~~-~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~---- 100 (891)
++++ .....-..|-.+.... ...+..++.+... ++.....+..+..++ ..-|..-+ .....++..+..
T Consensus 13 ~~~~-~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl----~~lw~~~~-r~f~~L~~~L~~~~~r 86 (234)
T PF12530_consen 13 SDPE-LQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLL----TLLWKAND-RHFPFLQPLLLLLILR 86 (234)
T ss_pred CChH-HHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHH----HHHHHhCc-hHHHHHHHHHHHHHhh
Confidence 3444 5666666666655443 4444444444322 123344433443333 34444322 112334333333
Q ss_pred hh---h--cCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHh-ccCChhHHhHHHHHHHHHHhhchhccccCCCCCC
Q 002697 101 CL---G--AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (891)
Q Consensus 101 ~L---~--~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l-~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~ 174 (891)
.. . +......-..+..+..++...+. +|+++++.+..++ .+.++..+..++..+..+++.-.-.
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd--------- 156 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD--------- 156 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc---------
Confidence 11 1 22344555666788888887755 9999999999999 6778889999999999999532211
Q ss_pred CcchhhhHHHHHHhhcC-CCHHHHHHHHHHHHHHh--cccchhhHHhHHHHHHHHHHhhCCCCH
Q 002697 175 ECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFI--MLMPSALFVSMDQYLQGLFLLSNDPSA 235 (891)
Q Consensus 175 ~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~ 235 (891)
+...+..+.+-+.. ..+.+-..-+..+..+- ....+.+......++..+|+.....+.
T Consensus 157 ---~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 157 ---FYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred ---HHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 12334444444433 24554444333332221 112234445556778899988776543
No 231
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=22 Score=44.66 Aligned_cols=225 Identities=12% Similarity=0.091 Sum_probs=114.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHh---cCCChHHHHHHH----hhccCCCCHHHHHHHHHHHHHhHHhh-hccCCh
Q 002697 17 ICRLLEQQISPSSTADKSQIWQQLQQYS---QFPDFNNYLAFI----LARAEGKSVEIRQAAGLLLKNNLRTA-YKSMSP 88 (891)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~---~~p~~~~~l~~i----l~~~~~~~~~~R~~a~~~Lk~~i~~~-w~~~~~ 88 (891)
+......+.++++. .|-.+.+.+.++. .++-|...+.+. +.+ ..|+..|.. -.+..-.+-++ -...+.
T Consensus 878 ~~l~~~sl~~~~p~-~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas--~~d~i~R~g-hslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPK-LRCAAAEALARLAQVVGSAPFVASLAQNSFDKLAS--ARDPITRTG-HSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCChH-HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh--cCCcHHHHH-HHHHHHHHHHhccCCCCc
Confidence 33444455567888 8888888877754 345555444443 332 345555544 33333444333 223344
Q ss_pred hhHHHHHHhHhhhhhcC-ChHHHHHHHHHHHHHHhhcccCchHHHHHH---HHHHhcc-C--ChhHHhHHHHHHH-----
Q 002697 89 SNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQA---LVTCLDS-N--DINHMEGAMDALS----- 156 (891)
Q Consensus 89 ~~~~~i~~~ll~~L~~~-~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~---L~~~l~~-~--~~~~r~~al~~L~----- 156 (891)
+....-...++..-+|+ ++.|+.-.-..++.++...++-.|--.-+. ...++-+ + ..+++.+-=+++.
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 43333223444444566 558888888888888877666666433332 2222222 2 1233333333333
Q ss_pred -HHHhhchhccccCCCCCCCcchhhhHHHH----HHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhC
Q 002697 157 -KICEDIPQVLDSDVPGLAECPINIFLPRL----LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN 231 (891)
Q Consensus 157 -~l~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 231 (891)
.+....++.+.... .+.....+-... .-.+.++++.+..++++|+..+--+-|. .-+++.++..+..++.
T Consensus 1034 ~alittlgpeL~~N~---~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNG---DKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHhcccccCCCC---cccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhc
Confidence 44444444332210 011122222222 1123456889999999999888766554 2334556666666555
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 002697 232 DPSAEVRKLVCAAFNLLIE 250 (891)
Q Consensus 232 ~~~~~v~~~~~~~l~~l~~ 250 (891)
.+---.|...+.++..+..
T Consensus 1109 s~~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred chhhhhhhhHHhhhhHHhH
Confidence 4433345555555554443
No 232
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.06 E-value=12 Score=41.51 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=82.1
Q ss_pred HhHhhhhhcCChHHHHHHHHHHHHHHhh---cc--cC----chHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcc
Q 002697 96 SELLPCLGAADRHIRSTVGTIVSVVVQL---GG--IA----GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (891)
Q Consensus 96 ~~ll~~L~~~~~~vr~~~a~~l~~i~~~---~~--~~----~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~ 166 (891)
+.+...|.+++-.+|....++.++++.. ++ .+ ....|+..+.+.+.+.+|..|.-|+..+..++..-....
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 4555677777888898888888887654 22 23 345677788888889999999999999999987533321
Q ss_pred ccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccc
Q 002697 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (891)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (891)
..-.++...+...++|.+..||..|++.++.++...|
T Consensus 382 ---------~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 382 ---------GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred ---------chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 1236778888999999999999999999998875544
No 233
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.84 E-value=13 Score=41.35 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHh
Q 002697 150 GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLL 229 (891)
Q Consensus 150 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 229 (891)
..+..+..+++++... ..+ ++.+..++..++++..+++..||..++..+..++......-...++.+...+...
T Consensus 61 RIl~fla~fv~sl~q~-d~e-----~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~R 134 (892)
T KOG2025|consen 61 RILSFLARFVESLPQL-DKE-----EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIR 134 (892)
T ss_pred HHHHHHHHHHHhhhcc-Cch-----hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHH
Confidence 3555566666665532 111 2456777888888888999999999999999998743222222344456667777
Q ss_pred hCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhh-cCCCCHHHHHHHHHHHH
Q 002697 230 SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV-NKDTDDDVALEACEFWH 287 (891)
Q Consensus 230 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~v~~~a~~~l~ 287 (891)
+.|..+.||.+|..+|..+-+...+.=- .++..+... -.|+.++||+.|+..+.
T Consensus 135 l~Drep~VRiqAv~aLsrlQ~d~~dee~----~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 135 LKDREPNVRIQAVLALSRLQGDPKDEEC----PVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HhccCchHHHHHHHHHHHHhcCCCCCcc----cHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 7788899999999999998743221100 122222222 24788999999887654
No 234
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.77 E-value=3.7 Score=42.68 Aligned_cols=184 Identities=16% Similarity=0.118 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhH----HhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhc
Q 002697 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ----ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (891)
Q Consensus 664 l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~ 739 (891)
+.+++ ..+..++..+...|..++..++...+.... ..++.++..+...++.+ +.++...|+.+++.+...-
T Consensus 107 ~~~fl-~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~----~~~~~~~av~~L~~LL~~~ 181 (312)
T PF03224_consen 107 YSPFL-KLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSS----DSELQYIAVQCLQNLLRSK 181 (312)
T ss_dssp HHHHH-HH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HH----HH---HHHHHHHHHHHTSH
T ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCC----CcchHHHHHHHHHHHhCcc
Confidence 33444 466777889999999999999887764433 34555555555544433 4566788899999987543
Q ss_pred h--hhhhhHHHHHHHHHHHHhc----CChhhhhhHHHhHHHHHhhhhhhc---CCccCcchhHHHHHHHhhccCCCCchH
Q 002697 740 R--QEISPIVMTVVLCLVPILK----HSEELNKSLIENSAITLGRLAWVC---PELVSPHMEHFMQPWCIALSMIRDDTE 810 (891)
Q Consensus 740 ~--~~~~~~~~~il~~l~~~l~----~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~~~~~~l~~~~~~l~~~~~~~e 810 (891)
. ..|.. ...++.+.+++. .+......+.-.++-++.-+.... ......+ +++..+..+.....+-.
T Consensus 182 ~~R~~f~~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKv 256 (312)
T PF03224_consen 182 EYRQVFWK--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKV 256 (312)
T ss_dssp HHHHHHHT--HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHH
T ss_pred hhHHHHHh--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchH
Confidence 2 11211 455566666661 111113345555666666555321 1111112 55556555554221111
Q ss_pred HHHHHHHHHHHHhhChhh-----hHhhHHHHhhHhhcccccCchhHHHHHHHH
Q 002697 811 KEDAFRGLCAMVKANPSG-----ALSSLVFMCRAIASWHEIRSEELHNEVCQV 858 (891)
Q Consensus 811 ~~~~~~~l~~l~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (891)
.+.++..|-+++...+.. +..+++.+++.+....- .++|+.+.+..+
T Consensus 257 vRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~-~Dedl~edl~~L 308 (312)
T PF03224_consen 257 VRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKW-SDEDLTEDLEFL 308 (312)
T ss_dssp HHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS---SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCC-CCHHHHHHHHHH
Confidence 223444555555554432 22556666666655211 334566554443
No 235
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.72 E-value=2 Score=40.48 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=83.9
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhh
Q 002697 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (891)
Q Consensus 178 ~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~ 257 (891)
+...++.+++.+.+++..+|..|++.+..++... +.. =...++.++.+..|+++.+|..|...+..+.+.++..+.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG---Lvn-P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQG---LVN-PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC---CCC-hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 3556788888999999999999999999998652 110 012377788888999999999999999999999998887
Q ss_pred HhHHHHHHHHHh----hcCCCCHHH---HHHHHHHHHHhhccCCchhhHHhhhhhhHHHH
Q 002697 258 PHLRNLFEYMLQ----VNKDTDDDV---ALEACEFWHSYFEAQLPHENLKEFLPRLVPVL 310 (891)
Q Consensus 258 ~~l~~l~~~~~~----~~~~~~~~v---~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l 310 (891)
..+.+-+..... ...+..... ....+..|..+... .+..-+.++..++..+
T Consensus 82 ~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~--~r~~R~~Fl~~l~k~f 139 (187)
T PF12830_consen 82 SRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRS--NRKSRRKFLKSLLKQF 139 (187)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhc--ccHhHHHHHHHHHHHH
Confidence 655444433332 222221111 33445666666653 2333344555555444
No 236
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.65 E-value=3.7 Score=47.68 Aligned_cols=144 Identities=17% Similarity=0.099 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcc----CChhHHhHHHHHHHHHHhhchhcc------ccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHH
Q 002697 130 LELLQALVTCLDS----NDINHMEGAMDALSKICEDIPQVL------DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKL 199 (891)
Q Consensus 130 ~~ll~~L~~~l~~----~~~~~r~~al~~L~~l~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~ 199 (891)
.+++..+..++.+ .++..+..++.+++.++..+...- ..+.....+...+.+...+-...+..+...+..
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 5677777777764 356788999999999887654331 011111112333444444444445567788999
Q ss_pred HHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCH
Q 002697 200 SLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP---SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDD 276 (891)
Q Consensus 200 al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 276 (891)
++++|+++... ..++.+...+.+. +..+|..|+.+|..++..+|+.+.+.+-.++. ....+.
T Consensus 510 ~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~-----n~~e~~ 574 (618)
T PF01347_consen 510 YLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFM-----NTTEDP 574 (618)
T ss_dssp HHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH------TTS-H
T ss_pred HHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhc-----CCCCCh
Confidence 99999988631 1233444444333 57889999999988877777665533322221 234567
Q ss_pred HHHHHHHHHHHH
Q 002697 277 DVALEACEFWHS 288 (891)
Q Consensus 277 ~v~~~a~~~l~~ 288 (891)
++|..|+..+..
T Consensus 575 EvRiaA~~~lm~ 586 (618)
T PF01347_consen 575 EVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 799998766544
No 237
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=0.21 Score=45.80 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHH---Hhcc
Q 002697 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD---AVGF 553 (891)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~---~~~~ 553 (891)
+...++.++.+|.+.+..-|--|-..+..++...++.+.|.+++++..|..+|...+.++....+.+|..+.. .+|.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 5567778888888766666777777888888888999999999999999999999988888877777776665 4567
Q ss_pred cCCchhhhhhhhHHHHHHHHc
Q 002697 554 ELNQPVYLDILMPPLIAKWQQ 574 (891)
Q Consensus 554 ~~~~~~~~~~l~~~l~~~l~~ 574 (891)
... ||+.+++|.+ +.+++
T Consensus 192 aLV--PfYRQlLp~~-n~~k~ 209 (262)
T KOG3961|consen 192 ALV--PFYRQLLPVL-NTFKN 209 (262)
T ss_pred hhh--hHHHHhhhhh-hhhcc
Confidence 776 9999999854 44444
No 238
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.57 E-value=4.7 Score=46.29 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=70.4
Q ss_pred cHHHHHHHHHHHHHHHcCc-------chhhhhHHHHHHhhc----cCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHH
Q 002697 366 NLRKCSAAALDVLSNVFGD-------EILPTLMPVIQAKLS----ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (891)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~-------~~~~~l~~~l~~~l~----~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i 434 (891)
.+|..|..+++.+...... .+...+++.+...+. ..+ -..+...+.+||.+.... .++.+
T Consensus 412 ~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~LkaLGN~g~~~------~i~~l 482 (574)
T smart00638 412 YLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD---EEEIQLYLKALGNAGHPS------SIKVL 482 (574)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC---chheeeHHHhhhccCChh------HHHHH
Confidence 4677888888887775421 123445555554443 334 556788888888776421 11222
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Q 002697 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD--TNKRVQEAACSAFAT 505 (891)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~~v~~~a~~al~~ 505 (891)
.+++. .-....+.+|.+|+++|.+++...+. .+-+.++..+.+ .+..||.+|+.+|..
T Consensus 483 ~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~------------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 483 EPYLE-GAEPLSTFIRLAAILALRNLAKRDPR------------KVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch------------HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 33322 22345679999999999988875432 233344444444 357899999887763
No 239
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.48 E-value=1.8 Score=42.18 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCC---cchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC
Q 002697 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD---EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~---~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 443 (891)
.|.+|..+|. .+.-+..++|.+..+++++-. .+...--.-++...++..+..-++.||+.+++|.++.++-
T Consensus 214 ~r~aAl~sLr------~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcli 287 (450)
T COG5095 214 TRDAALESLR------NDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLI 287 (450)
T ss_pred HHHHHHHHhc------cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHH
Confidence 5677766552 233344555555555443210 0022222223333344444444567899999888777642
Q ss_pred ------C----CChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHh-
Q 002697 444 ------D----KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK--RVQEAACSAFATLEEEA- 510 (891)
Q Consensus 444 ------d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~--~v~~~a~~al~~l~~~~- 510 (891)
+ ++..+|.-|+..++..+..++.. ....-..+...+++.+.|.+. ..+-.|...+..+....
T Consensus 288 akklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~-----YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~i 362 (450)
T COG5095 288 AKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS-----YKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEVI 362 (450)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh-----hhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhchhhe
Confidence 2 23468999999998888777542 333445677888888877643 45667777777776654
Q ss_pred cccchHhHHHHHHHHHHHHccc
Q 002697 511 AEELAPRLEIILQHLMMAFGKY 532 (891)
Q Consensus 511 ~~~~~~~l~~il~~l~~~l~~~ 532 (891)
...+.|.++.-...+.+.+.+.
T Consensus 363 r~~i~pn~~~y~rlv~ktle~~ 384 (450)
T COG5095 363 RTVIKPNADYYVRLVNKTLEKG 384 (450)
T ss_pred eeeeccchHHHHHHHHHHHhcc
Confidence 3334443333333333444443
No 240
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.42 E-value=4.1 Score=42.34 Aligned_cols=196 Identities=15% Similarity=0.116 Sum_probs=106.9
Q ss_pred CChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhcc------CChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHH
Q 002697 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS------MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVV 120 (891)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~------~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i 120 (891)
+.+...+..++... +.+.++.+....++-..+...-.. .........-..+++.+..++..++..++.+++.+
T Consensus 54 ~~~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 54 DQYASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp --------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 34555666766542 367888888888887766543211 11111111345667777788999999999999999
Q ss_pred HhhcccCchH---HHHHHHHHHhcc----CChhHHhHHHHHHHHHHhhchh--ccccCCCCCCCcchhhhHHHHHHhh--
Q 002697 121 VQLGGIAGWL---ELLQALVTCLDS----NDINHMEGAMDALSKICEDIPQ--VLDSDVPGLAECPINIFLPRLLQFF-- 189 (891)
Q Consensus 121 ~~~~~~~~w~---~ll~~L~~~l~~----~~~~~r~~al~~L~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l-- 189 (891)
+...+...-. +.++.+.+.+.+ ++...+..++.+|..+...-.. .+-. ...++.+.+.+
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~----------~~~v~~l~~iL~~ 202 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK----------SNGVSPLFDILRK 202 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT----------HHHHHHHHHHHH-
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh----------cCcHHHHHHHHHh
Confidence 9886544443 666766666654 3445678899999888764222 1111 45566677777
Q ss_pred ---cC--CCHHHHHHHHHHHHHHhcccchhhHHhH--HHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhChhh
Q 002697 190 ---QS--PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSF 255 (891)
Q Consensus 190 ---~~--~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~~~~~v~~~~~~~l~~l~~~~~~~ 255 (891)
.+ .+.++...++-|+..+... +.....+ ..+++.+...+. ...+.+-+-++.+|..+++..++.
T Consensus 203 ~~~~~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 203 QATNSNSSGIQLQYQALLCLWLLSFE--PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp --------HHHHHHHHHHHHHHHTTS--HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT
T ss_pred hcccCCCCchhHHHHHHHHHHHHhcC--HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH
Confidence 22 2456777787777665532 1121111 115666666554 345667777888888888766653
No 241
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.34 E-value=3 Score=40.72 Aligned_cols=149 Identities=8% Similarity=0.110 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCC------CHHHHHHHHH
Q 002697 428 YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT------NKRVQEAACS 501 (891)
Q Consensus 428 ~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~------~~~v~~~a~~ 501 (891)
.-|++.++..+ +...+...|.+|+.++.. ..-+.+++|.++..+.+. +..+-.....
T Consensus 196 q~YF~kvisal---~dEs~~~~r~aAl~sLr~--------------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~ 258 (450)
T COG5095 196 QMYFDKVISAL---LDESDEQTRDAALESLRN--------------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVM 258 (450)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcc--------------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33455555444 334566788888777642 222344455554444331 1222222222
Q ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHcc------cchh----HHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHH
Q 002697 502 AFATLEEEAAEELAPRLEIILQHLMMAFGK------YQRR----NLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (891)
Q Consensus 502 al~~l~~~~~~~~~~~l~~il~~l~~~l~~------~~~~----~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~ 571 (891)
-...++++-.-.+.||+.++||.++.++-. +++. .+..+...++.++...+.... ..-+.+...+++.
T Consensus 259 m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Yk--tLkPRvtrTllKa 336 (450)
T COG5095 259 MYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYK--TLKPRVTRTLLKA 336 (450)
T ss_pred HHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhh--hhchHHHHHHHHH
Confidence 233333332334689999999999988732 1221 344566677777776665443 3334455556665
Q ss_pred HHcCCCCCcchHhHHHHHHHHHHH
Q 002697 572 WQQLPNSDKDLFPLLECFTSIAQA 595 (891)
Q Consensus 572 l~~~~~~~~~~~~~~~~l~~i~~~ 595 (891)
|-...........++.|++.+.+-
T Consensus 337 fLD~~k~~sT~YGalkgls~l~ke 360 (450)
T COG5095 337 FLDREKTESTQYGALKGLSILSKE 360 (450)
T ss_pred HHhcccccchhhhhhhhhhhhchh
Confidence 554321222224677777766553
No 242
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=2.3 Score=43.88 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=101.5
Q ss_pred hhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhh
Q 002697 397 KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ 476 (891)
Q Consensus 397 ~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 476 (891)
.+.+-+ ..+|..|+..+-.+...-+..+..++-.+++.+.....|.+..||.+...++..+....... ....+
T Consensus 66 qlkHhN---akvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e----~~sp~ 138 (393)
T KOG2149|consen 66 QLKHHN---AKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKE----DQSPM 138 (393)
T ss_pred hhcCch---HhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchh----hhcch
Confidence 344555 88999999988888777666677788889999999999999999999999988876655432 35667
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcc
Q 002697 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK 531 (891)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~ 531 (891)
+.-+++.+...|..-.+.+|..+...+..+++.+++.+..+...+++.+...+..
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~ 193 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISK 193 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888778999999999999999999888777766676666665543
No 243
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=93.25 E-value=13 Score=39.38 Aligned_cols=159 Identities=12% Similarity=0.157 Sum_probs=103.3
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhc--cccCCCCCCCcchhhhHHHHHHhhcC--CCHHHHHHHH
Q 002697 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV--LDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSL 201 (891)
Q Consensus 126 ~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~al 201 (891)
.-.|..+.+.+...+-+++..+|.+|+++++.++.+.... +.. -.++. .+...+.. .+..-|..|+
T Consensus 20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~-------l~id~---~ii~SL~~~~~~~~ER~QAL 89 (371)
T PF14664_consen 20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLK-------LHIDI---FIIRSLDRDNKNDVEREQAL 89 (371)
T ss_pred hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHH-------cCCch---hhHhhhcccCCChHHHHHHH
Confidence 3568888888887665666999999999998888754331 000 00111 23333433 3456699999
Q ss_pred HHHHHHhcc--cchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhH--hHHHHHHHHHhhcCCCCHH
Q 002697 202 GSVNQFIML--MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP--HLRNLFEYMLQVNKDTDDD 277 (891)
Q Consensus 202 ~~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~--~l~~l~~~~~~~~~~~~~~ 277 (891)
+.+..+++. .+..+ -..+++.+...+.+++...|..+++.+.+++-..|+.+.. -+..++..+. ++..+
T Consensus 90 kliR~~l~~~~~~~~~---~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~----d~~~~ 162 (371)
T PF14664_consen 90 KLIRAFLEIKKGPKEI---PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALI----DGSFS 162 (371)
T ss_pred HHHHHHHHhcCCcccC---CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHH----hccHh
Confidence 999999987 22222 1345788888888888889999999999999888887542 2333444433 22223
Q ss_pred HHHHHHHHHHHhhccCCchhhHHh
Q 002697 278 VALEACEFWHSYFEAQLPHENLKE 301 (891)
Q Consensus 278 v~~~a~~~l~~l~~~~~~~~~~~~ 301 (891)
+....+..+..+.+.|..++.+++
T Consensus 163 ~~~~l~~~lL~lLd~p~tR~yl~~ 186 (371)
T PF14664_consen 163 ISESLLDTLLYLLDSPRTRKYLRP 186 (371)
T ss_pred HHHHHHHHHHHHhCCcchhhhhcC
Confidence 555556777777777655555544
No 244
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.01 E-value=2.4 Score=44.43 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=76.6
Q ss_pred hhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCC-------CHHHHHHH
Q 002697 427 LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-------NKRVQEAA 499 (891)
Q Consensus 427 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~-------~~~v~~~a 499 (891)
..-|+..+...+ .+.+...|..|+..|.. ..-+.+++|.++..+.+. +..+-...
T Consensus 176 lq~yf~~It~a~----~~~~~~~r~~aL~sL~t--------------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~l 237 (343)
T cd08050 176 LQLYFEEITEAL----VGSNEEKRREALQSLRT--------------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYL 237 (343)
T ss_pred HHHHHHHHHHHH----hCCCHHHHHHHHHHhcc--------------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHH
Confidence 334444444443 34667777777665532 223344445544444322 23333334
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHHHcc----------cchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHH
Q 002697 500 CSAFATLEEEAAEELAPRLEIILQHLMMAFGK----------YQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLI 569 (891)
Q Consensus 500 ~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~----------~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~ 569 (891)
+..+..++.+-.=.+.||+..+++.++.++-. ..+..+..+...++.+++..+.... .....++..+.
T Consensus 238 m~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~--~l~~ri~~tl~ 315 (343)
T cd08050 238 MRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYN--TLQPRITRTLL 315 (343)
T ss_pred HHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHH
Confidence 44444444443446799999999999998832 2234566889999999998887754 45566666666
Q ss_pred HHHHcC
Q 002697 570 AKWQQL 575 (891)
Q Consensus 570 ~~l~~~ 575 (891)
+.+.+.
T Consensus 316 k~l~d~ 321 (343)
T cd08050 316 KALLDP 321 (343)
T ss_pred HHHcCC
Confidence 666653
No 245
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.57 E-value=17 Score=38.85 Aligned_cols=169 Identities=14% Similarity=0.046 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhh----------hhCCCc-ch
Q 002697 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ----------DIGHQN-GR 474 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----------~~~~~~-~~ 474 (891)
-..-..++.++..+...+++.+..+...=+|.++..+-+....+|..|..++......+.+ ..+... ..
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence 3445566777778888888777777666677777777777888888876666555443321 001000 11
Q ss_pred hhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcc
Q 002697 475 EQFEKVLMGLLKRILDTNK-RVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (891)
Q Consensus 475 ~~~~~~l~~l~~~l~d~~~-~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~ 553 (891)
.+.+.+.+.+.+.+.+.+. ..-...-.++..++..-.-.--+|+...+.....+++..+..++..++.+...++.....
T Consensus 228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP 307 (372)
T ss_pred cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 2333444444455555222 222222223333332111233467888888888899988888999999999999987655
Q ss_pred cCC-chhhhhhhhHHHHHHHHc
Q 002697 554 ELN-QPVYLDILMPPLIAKWQQ 574 (891)
Q Consensus 554 ~~~-~~~~~~~l~~~l~~~l~~ 574 (891)
... .++.+.-++.++...++.
T Consensus 308 ~~~~~~k~l~lL~~Pl~~~l~~ 329 (372)
T PF12231_consen 308 NELTSPKRLKLLCQPLSSQLRR 329 (372)
T ss_pred CccccHHHHHHHHHHHHHHhCc
Confidence 432 245566666666555443
No 246
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=92.37 E-value=24 Score=40.12 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=47.0
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhH-HHHHHHHHHhcCCCCCcC--chhHhhhHHHHHHHHH
Q 002697 662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL-SDFLDIAAKQLNTPKLKE--TVSVANNACWAIGELA 736 (891)
Q Consensus 662 ~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~--~~~v~~~a~~alg~l~ 736 (891)
...+|.+...++.++..|..++..+|.+++.... ..+.+ ...++.++++|-+..... .+++-.+++..+-.++
T Consensus 565 ekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 565 EKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred ccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 3466778888888889999999999999887643 12222 357777888876653100 1344455555555554
No 247
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.34 E-value=0.25 Score=32.84 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=26.1
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHhhH
Q 002697 434 IVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (891)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~~~ 461 (891)
.+|.+++.++++++.++..|+|++++++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999886
No 248
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.28 E-value=15 Score=37.59 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=103.1
Q ss_pred ChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHH
Q 002697 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (891)
Q Consensus 106 ~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (891)
++.-|+..+.+-..+...+....|.+++..|.++.+. |. ..... . ..+ ..-..+...+
T Consensus 2 d~k~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL~k~------------lq---~~~~~-~-~~I-----P~k~~v~krL 59 (307)
T PF04118_consen 2 DSKYKKYNAEVEKALKSFESSSEWADYISFLGKLLKA------------LQ---NSNNQ-F-PYI-----PHKLQVSKRL 59 (307)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH------------Hh---ccCCC-C-cee-----CcHHHHHHHH
Confidence 3455666666666666667778999988776654321 11 00000 0 011 1113455667
Q ss_pred HHhhcCCC-HHHHHHHHHHHHHHhcccc-hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHH
Q 002697 186 LQFFQSPH-TSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (891)
Q Consensus 186 ~~~l~~~~-~~vr~~al~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l 263 (891)
.++|+..- ..|...|+++...+.+.++ +.+...+.-+.+.++.++...+..||-..+..+....-.-+..+.+.+..+
T Consensus 60 aqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~l 139 (307)
T PF04118_consen 60 AQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGL 139 (307)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 77776653 4788999999999887765 457777888899999988777777887777776555434444666666667
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 002697 264 FEYMLQVNKDTDDDVALEACEFWHSYFE 291 (891)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~a~~~l~~l~~ 291 (891)
+-.++..++++..+....+++.+..+..
T Consensus 140 i~slLpGLede~sE~~~~~~~ll~~l~~ 167 (307)
T PF04118_consen 140 ILSLLPGLEDEGSEFFDRTLKLLDKLKE 167 (307)
T ss_pred HHHhccccccCCchHHHHHHHHHHHHHH
Confidence 7666666666555555555555554443
No 249
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.25 E-value=36 Score=41.99 Aligned_cols=177 Identities=11% Similarity=0.054 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHc-CcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchh-hhhhhHHHHHHHHhhhcCCC
Q 002697 368 RKCSAAALDVLSNVF-GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDDK 445 (891)
Q Consensus 368 r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~ 445 (891)
..++..+.+..+... |....+.++..+.....+ +.+|++|.+.+..+....-...- ......++|...+...+.|.
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~--~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~ 1581 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTAD--SSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDD 1581 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcch
Confidence 455666666666655 446667777777653333 23499999988776655432111 23456677888899999999
Q ss_pred ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhcccchHhHHHHHH
Q 002697 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAAEELAPRLEIILQ 523 (891)
Q Consensus 446 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~--~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~ 523 (891)
.-.||..|..+++-+...-... ... ..-.......... +..-.-.|..+++.++-..+-.+.-+++..+.
T Consensus 1582 ~i~vre~Aa~~Lsgl~~~s~~~----~~~----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~ 1653 (1710)
T KOG1851|consen 1582 QIEVREEAAKCLSGLLQGSKFQ----FVS----DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLM 1653 (1710)
T ss_pred HHHHHHHHHHHHHHHHhccccc----cch----HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHH
Confidence 8899999999988776532211 011 1111111112111 12234456778888887766555445555444
Q ss_pred HHHHHHcccchhHHHHHHHHHHHHHHHhcccC
Q 002697 524 HLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (891)
Q Consensus 524 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~ 555 (891)
.+.....+ +......+-+++..+-+...+..
T Consensus 1654 ~Ls~fa~e-~~~i~~tvkktvseFrrth~D~W 1684 (1710)
T KOG1851|consen 1654 NLSSFARE-SAAIKQTVKKTVSEFRRTHADTW 1684 (1710)
T ss_pred HHHhhcCC-chHHHHHHHHHHHHHHHHhhhhh
Confidence 43333222 23445566677776666554443
No 250
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.56 E-value=7.5 Score=41.88 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcc-----hHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhh
Q 002697 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEA-----WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPL 441 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~-----~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 441 (891)
.|+.|...|. .+.-+..++|.+..++...-..| ...-...+...-++..+..=++.+|+..++|.++.+
T Consensus 223 ~r~eAL~sL~------TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTC 296 (576)
T KOG2549|consen 223 LRQEALQSLE------TDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTC 296 (576)
T ss_pred HHHHHHHhhc------cCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHh
Confidence 4666655552 13334556666666555422111 333333333444455544456789999999988887
Q ss_pred cC----------CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHH
Q 002697 442 LD----------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEE 509 (891)
Q Consensus 442 l~----------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~--~~v~~~a~~al~~l~~~ 509 (891)
+- |.++.+|.-|+..+..++..+... ....-..++..+.+.+.|+. ...+-.|...|..|-..
T Consensus 297 vVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~-----y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 297 VVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTL-----YNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred hhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhh
Confidence 53 568899999999999999887643 33455678888888888863 34455555555555443
Q ss_pred h-cccchHhHHHHHHHHHHHHcc
Q 002697 510 A-AEELAPRLEIILQHLMMAFGK 531 (891)
Q Consensus 510 ~-~~~~~~~l~~il~~l~~~l~~ 531 (891)
. ...+.|.+......+...+..
T Consensus 372 ~I~~~ilp~L~~~~~~l~~~l~~ 394 (576)
T KOG2549|consen 372 VIRTVILPNLKEYNERLQSVLDV 394 (576)
T ss_pred hhhheeccchHHHHHHhhhhccc
Confidence 3 344566666666655555543
No 251
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.53 E-value=17 Score=36.66 Aligned_cols=314 Identities=11% Similarity=0.123 Sum_probs=159.5
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcC--CCHHHHHHHHHH
Q 002697 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGS 203 (891)
Q Consensus 126 ~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~al~~ 203 (891)
.+..+-++..+. +..+++.....-++.+|..+...-++.++- +-+..+++.|.. .+.++-...+.+
T Consensus 103 ~ga~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da-----------~g~~vvv~lL~~~~~~~dlt~~~~~~ 170 (461)
T KOG4199|consen 103 NGAHDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDA-----------EAMAVVLKLLALKVESEEVTLLTLQW 170 (461)
T ss_pred CCCcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhcc-----------ccHHHHHHHHhcccchHHHHHHHHHH
Confidence 344555554444 466677777778888888888766665532 225566666665 356777777777
Q ss_pred HHHHhcccchhhHHhHH-HHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCh-----hhhhHhHHHHH-----HHHHhhc
Q 002697 204 VNQFIMLMPSALFVSMD-QYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRP-----SFLEPHLRNLF-----EYMLQVN 271 (891)
Q Consensus 204 l~~~~~~~~~~~~~~~~-~~l~~l~~~~~-~~~~~v~~~~~~~l~~l~~~~~-----~~~~~~l~~l~-----~~~~~~~ 271 (891)
+..-.-...-.-+..+. .+++.+...++ ....++-+..+.++..+..... .....|-..+. ..+...+
T Consensus 171 v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal 250 (461)
T KOG4199|consen 171 LQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEAL 250 (461)
T ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHH
Confidence 76544221111111111 23444444343 2333455667777766653211 01112222222 2222222
Q ss_pred C-CCCHHHHHHHHHHHHHhhccCCchhhHHhhhhh-hHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCC
Q 002697 272 K-DTDDDVALEACEFWHSYFEAQLPHENLKEFLPR-LVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (891)
Q Consensus 272 ~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~-li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 349 (891)
+ ..++++-..++..+..++-.. +..+...+. =+..++..+....
T Consensus 251 ~A~~dp~~L~~l~~tl~~lAVr~---E~C~~I~e~GGl~tl~~~i~d~n------------------------------- 296 (461)
T KOG4199|consen 251 QAGIDPDSLVSLSTTLKALAVRD---EICKSIAESGGLDTLLRCIDDSN------------------------------- 296 (461)
T ss_pred HccCCccHHHHHHHHHHHHHHHH---HHHHHHHHccCHHHHHHHHhhhc-------------------------------
Confidence 2 223444444455555543220 111100000 0122222222100
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHHHcCcc-hh-----hhhHHHHHHh-hccCCCcchHHHHHHHHHHHHHhhc
Q 002697 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-IL-----PTLMPVIQAK-LSASGDEAWKDREAAVLALGAIAEG 422 (891)
Q Consensus 350 ~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~-~~-----~~l~~~l~~~-l~~~~~~~~~~r~aa~~~l~~l~~~ 422 (891)
+ -..|..+-.+++.+....|.+ +- ....+.+... ++..++ +.+-+.++.++..++-.
T Consensus 297 -------~-------~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~--p~Vi~~~~a~i~~l~LR 360 (461)
T KOG4199|consen 297 -------E-------QGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDD--PLVIQEVMAIISILCLR 360 (461)
T ss_pred -------h-------hhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCC--hHHHHHHHHHHHHHHhc
Confidence 0 124666667776666666542 21 1223333332 223222 88888888888888766
Q ss_pred chhhhhhhHHH-HHHHHhhhcC-CC-ChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHH
Q 002697 423 CIKGLYPHLSE-IVAFLIPLLD-DK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAA 499 (891)
Q Consensus 423 ~~~~~~~~l~~-i~~~l~~~l~-d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a 499 (891)
.++.-...++. .-...++.++ +| ...|++.|||++.++...-.+. ....+..=++.++.....+++.++..|
T Consensus 361 ~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~-----~~~~l~~GiE~Li~~A~~~h~tce~~a 435 (461)
T KOG4199|consen 361 SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN-----RTILLANGIEKLIRTAKANHETCEAAA 435 (461)
T ss_pred CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc-----cchHHhccHHHHHHHHHhcCccHHHHH
Confidence 66654444432 2233444443 33 4478999999999998765543 344555556666666666677777777
Q ss_pred HHHHHHH
Q 002697 500 CSAFATL 506 (891)
Q Consensus 500 ~~al~~l 506 (891)
-.||..+
T Consensus 436 kaALRDL 442 (461)
T KOG4199|consen 436 KAALRDL 442 (461)
T ss_pred HHHHHhc
Confidence 7777654
No 252
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.32 E-value=22 Score=37.63 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=82.8
Q ss_pred cchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhh-----hhhhHHHHHHHHcCCCCCcchHhHHH
Q 002697 513 ELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYL-----DILMPPLIAKWQQLPNSDKDLFPLLE 587 (891)
Q Consensus 513 ~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~-----~~l~~~l~~~l~~~~~~~~~~~~~~~ 587 (891)
.+..|+..+. ..+.+.+.+. ..++|+|.++.-.-++. +|. ..++|.+.+.++...+.+.-+..++-
T Consensus 501 ~FidyvgdLa----~i~~nd~~E~--F~~EClGtlanL~v~dl---dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi 571 (791)
T KOG1222|consen 501 MFIDYVGDLA----GIAKNDNSES--FGLECLGTLANLKVTDL---DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVI 571 (791)
T ss_pred HHHHHHHHHH----HHhhcCchHH--HHHHHHHHHhhcccCCC---CHHHHHhhccccHHHHHhhcCCccchhhhhHHHH
Confidence 3455555543 3444433333 56899999887433222 232 35778888887765544433334443
Q ss_pred HHHHHHHHhcc--ccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhcc-chH
Q 002697 588 CFTSIAQALGA--GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQ-SNL 664 (891)
Q Consensus 588 ~l~~i~~~~~~--~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~l 664 (891)
.+|+++.-..- -+.| ..+++.+++.|+..+. |.+++...+-++-.++.. +....++-+ +..
T Consensus 572 ~~GT~a~d~~cA~Lla~--a~~i~tlieLL~a~Qe------------DDEfV~QiiyVF~Q~l~H--e~tr~~miket~~ 635 (791)
T KOG1222|consen 572 ACGTMARDLDCARLLAP--AKLIDTLIELLQACQE------------DDEFVVQIIYVFLQFLKH--ELTRRLMIKETAL 635 (791)
T ss_pred HhhhhhhhhHHHHHhCc--cccHHHHHHHHHhhcc------------cchHHHHHHHHHHHHHHH--HHHHHHHHhhccc
Confidence 44444432221 1222 1356667777765431 445555555444444432 222233322 335
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhHHHHh
Q 002697 665 RDMLLQCCMDDASDVRQSAFALLGDLARV 693 (891)
Q Consensus 665 ~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 693 (891)
-..+...++|.+.++|..+=.++.-++.+
T Consensus 636 ~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 636 GAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred hHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 55667778899999998776666665554
No 253
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=91.29 E-value=0.85 Score=36.89 Aligned_cols=60 Identities=20% Similarity=0.365 Sum_probs=47.7
Q ss_pred ccccHHHHHHHHHHHHHHHcCc---chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcc
Q 002697 363 NVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (891)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~ 423 (891)
+.|.+|..|++++..++..++. .+-+.+...+.+.+.+++ .++..+++|+..|..+....
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~-~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPK-KPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999975 456777777777777643 23889999999999886543
No 254
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.26 E-value=34 Score=39.74 Aligned_cols=120 Identities=15% Similarity=0.083 Sum_probs=73.5
Q ss_pred CChHHHHHHHHHHHHHHhhc-cc------------C----chHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccc
Q 002697 105 ADRHIRSTVGTIVSVVVQLG-GI------------A----GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (891)
Q Consensus 105 ~~~~vr~~~a~~l~~i~~~~-~~------------~----~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~ 167 (891)
.+..+|..+...++.++... .. . .-+.+...+.......+...+..++++|+.+-.
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------- 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------- 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------
Confidence 46678888888888887653 11 1 112334444444445566788889999987642
Q ss_pred cCCCCCCCcchhhhHHHHHHhhcCC---CHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002697 168 SDVPGLAECPINIFLPRLLQFFQSP---HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (891)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~~~---~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~ 244 (891)
+..++.+..++.+. ...+|.+|+.+|..+....|+...+.+ ++.+.+- ..+.++|..|+..
T Consensus 520 -----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l---~~I~~n~--~e~~EvRiaA~~~ 583 (618)
T PF01347_consen 520 -----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL---LPIFMNT--TEDPEVRIAAYLI 583 (618)
T ss_dssp -----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH---HHHHH-T--TS-HHHHHHHHHH
T ss_pred -----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH---HHHhcCC--CCChhHHHHHHHH
Confidence 45677888888765 678999999999988776554433222 3333221 2357899988766
Q ss_pred HHH
Q 002697 245 FNL 247 (891)
Q Consensus 245 l~~ 247 (891)
|..
T Consensus 584 lm~ 586 (618)
T PF01347_consen 584 LMR 586 (618)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 255
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.24 E-value=46 Score=41.16 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=70.1
Q ss_pred HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccc
Q 002697 583 FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQS 662 (891)
Q Consensus 583 ~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 662 (891)
..++.|++..+.+.+..+.|+..+++.. .. + .....|-.++..+..+...+|++..+++++
T Consensus 1522 ~~li~~i~~~~~a~~~d~~pl~~k~l~~-------tr----------s-s~~~~r~~ai~~~~~l~~~lge~~~~lL~q- 1582 (1621)
T KOG1837|consen 1522 KLLIAEIASDSVADKDDLKPLNQKILKK-------TR----------S-SSRKARYLAIIQVKLLYTKLGENVIVLLPQ- 1582 (1621)
T ss_pred HHHHHHHHhhccCChhhhHHHHHHHHHH-------hc----------c-ccHHHHHHHHHHHHHHHHHhcchhHHhhhh-
Confidence 4567778877777776666664443322 11 0 133455567778888999999999999998
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHh
Q 002697 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQAR 701 (891)
Q Consensus 663 ~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 701 (891)
.+|++.+.+.|++.+|...+..++..+=...|+.+..|
T Consensus 1583 -~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1583 -SIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred -hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhc
Confidence 99999999999988887777776666666666655443
No 256
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=91.12 E-value=26 Score=38.18 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHH-HHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHH
Q 002697 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQ-ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (891)
Q Consensus 107 ~~vr~~~a~~l~~i~~~~~~~~w~~ll~-~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (891)
-.-|-.+|.+++.++..-+...+..++. .|...++++....|..+..++...+......... .....+.+.+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~-------~~~~~l~~~L 173 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPS-------PPPQALSPRL 173 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCC-------ccHHHHHHHH
Confidence 3458888999999998877777888887 5999999999999999999998888866543211 0124566777
Q ss_pred HHhhcCCC-----------HHHHHHHHHHHHHHhc
Q 002697 186 LQFFQSPH-----------TSLRKLSLGSVNQFIM 209 (891)
Q Consensus 186 ~~~l~~~~-----------~~vr~~al~~l~~~~~ 209 (891)
...|+++. ..+|..+-..+..+..
T Consensus 174 ~~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~ 208 (441)
T PF12054_consen 174 LEILENPEPPYYDELVPSLKRLRTECQQLLATFRD 208 (441)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777431 1456666666665543
No 257
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=91.05 E-value=2 Score=38.79 Aligned_cols=124 Identities=15% Similarity=0.155 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchh----------------hhhhh
Q 002697 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK----------------GLYPH 430 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~----------------~~~~~ 430 (891)
+|...+.++..++...-+.-.|.+++.+.+.+++ + .......+..|..+.+...+ .+...
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~---~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-S---PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-c---hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 5666778888888877555566777777777665 4 67788888888888776542 12334
Q ss_pred HHHHHHHHhhhcCCCC----hHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002697 431 LSEIVAFLIPLLDDKF----PLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAF 503 (891)
Q Consensus 431 l~~i~~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~v~~~a~~al 503 (891)
.+.+++.+.+.+.... ..+...+..+++.+..|+.. .... .++++.+++.+.+++ .+..|+.+|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~-------~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPI-------ELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-H-------HHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCH-------HHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 5556666666554322 78888899999888887653 1122 247888888886544 477777664
No 258
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=90.88 E-value=16 Score=37.68 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 002697 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (891)
Q Consensus 448 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (891)
.-+.-|...++++.++++. .....+.+-+....|.+..||..|.+-|..||..
T Consensus 39 k~k~lasq~ip~~fk~fp~---------la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPS---------LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHHhhCch---------hhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 3455677888888888764 2346677777888898999999999999988864
No 259
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=90.58 E-value=31 Score=38.12 Aligned_cols=299 Identities=11% Similarity=0.018 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCC
Q 002697 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 446 (891)
-|..|+.-+......++-..++.+......++....+ ...|.+++..+..++++........-...+..+...-.+++
T Consensus 6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p--~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d 83 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQP--SEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDD 83 (464)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCC--HHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchh
Confidence 4666777776666666666666777777777765442 67899999999998886543111111112333333333344
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcC-------------CCH---HHHHHHHHHHHHHHHHh
Q 002697 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-------------TNK---RVQEAACSAFATLEEEA 510 (891)
Q Consensus 447 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-------------~~~---~v~~~a~~al~~l~~~~ 510 (891)
-..|-.|..+|.+=++.+..+ .....+.+..-+..+++.... ... ......+..+-.++.++
T Consensus 84 ~~~~l~aL~~LT~~Grdi~~~--~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nv 161 (464)
T PF11864_consen 84 FDLRLEALIALTDNGRDIDFF--EYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNV 161 (464)
T ss_pred HHHHHHHHHHHHcCCcCchhc--ccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 456666666665444333211 011222222222222210000 000 00111222222222222
Q ss_pred ----cccch-HhHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcch-H
Q 002697 511 ----AEELA-PRLEIILQHLMMAFGKY-QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-F 583 (891)
Q Consensus 511 ----~~~~~-~~l~~il~~l~~~l~~~-~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~ 583 (891)
...+. ..+..++..++.+.... .....+..+..+..++....-. .+.+..++..|....... .+ .
T Consensus 162 iKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP---~~sl~~~i~vLCsi~~~~-----~l~~ 233 (464)
T PF11864_consen 162 IKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP---SESLSPCIEVLCSIVNSV-----SLCK 233 (464)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC---hHHHHHHHHHHhhHhccc-----ccch
Confidence 23332 45666666666664333 3334456666666666532111 134444444444332221 22 3
Q ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccc-
Q 002697 584 PLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQS- 662 (891)
Q Consensus 584 ~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~- 662 (891)
.+-+++..+++.- .-...+..+..+|.+.. .... .+.....+|+..++.+.-+.|++-.+-++..
T Consensus 234 ~~w~~m~nL~~S~------~g~~~i~~L~~iL~~~~-------~~~~-~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~ 299 (464)
T PF11864_consen 234 PSWRTMRNLLKSH------LGHSAIRTLCDILRSPD-------PQNK-RDINVLRGAVFFLRMLLWGSGEQGYPSLPFSP 299 (464)
T ss_pred hHHHHHHHHHcCc------cHHHHHHHHHHHHcccC-------cccc-ccHHHHhhHHHHHHHHHhccccCCcceecccH
Confidence 4445555555321 12234555555552111 0011 1456667888888888877765544444332
Q ss_pred -hHHHHHHHHhcCCChHHHHHHHHHHhHHH
Q 002697 663 -NLRDMLLQCCMDDASDVRQSAFALLGDLA 691 (891)
Q Consensus 663 -~l~~~l~~~~~~~~~~vr~~a~~~l~~l~ 691 (891)
.+++-+...++..+..|--..+.++..+.
T Consensus 300 ~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 300 SSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 37777777777655444333334444444
No 260
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.54 E-value=5.3 Score=35.58 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHcc-cchhHHHHHHHHHHHHHHHhc
Q 002697 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVG 552 (891)
Q Consensus 476 ~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~il~~l~~~l~~-~~~~~~~~~~~al~~l~~~~~ 552 (891)
.-...+..+.+.+.+.++.|+..|...|..++++|+..+...+ ..++..|.+++.. ....++..+++.+...+...+
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 3467888999999999999999999999999999988765433 4677777888876 556677788888888888776
Q ss_pred cc
Q 002697 553 FE 554 (891)
Q Consensus 553 ~~ 554 (891)
..
T Consensus 114 ~~ 115 (144)
T cd03568 114 ND 115 (144)
T ss_pred CC
Confidence 43
No 261
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=90.52 E-value=7.4 Score=36.88 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcch-hhhhhhHHHHHHH---Hhhh
Q 002697 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAF---LIPL 441 (891)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~-~~~~~~l~~i~~~---l~~~ 441 (891)
..|..+..+++.....+|.+.+=.++|.- +.+++ ....+-.+.+..+-++.. ..+.-+...++|. +.+.
T Consensus 56 ~~~~~~e~~lgaAi~amGpe~vL~~lPLn---l~~~~----~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~ 128 (198)
T PF08161_consen 56 SFRKELEQVLGAAIRAMGPEQVLSILPLN---LDNAD----DSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQK 128 (198)
T ss_pred chHHHHHHHHHHHHHHCCHHHHHHHCCCC---ccCCC----cCCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Confidence 46889999999999999986544455532 22111 112222334444443322 1222233333332 2222
Q ss_pred cC----CCChHHHHHHHHHHHhhHHHHhhhhC-CCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 002697 442 LD----DKFPLIRSISCWTLSRFSKFIVQDIG-HQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (891)
Q Consensus 442 l~----d~~~~vr~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l 506 (891)
.. +..+.-.+..-....++...++.+++ |.+..+.+..+-+.+.+.|.+ .+.+|...|.+|..+
T Consensus 129 ~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~~L~~~L~~-~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 129 AQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAKLLGNALYD-QPDLRPIICQALRRL 197 (198)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHH
Confidence 11 22222222223344677777777765 556667777777777777776 478999999999876
No 262
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=90.27 E-value=13 Score=34.94 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcc
Q 002697 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (891)
Q Consensus 131 ~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (891)
..++.+++++.+++..+|..|+.++..+.+..-- . + ...+|.++.+..|+++.+|..|.+.+..+.+.
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--n--------P--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLV--N--------P--KQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--C--------h--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 3456666677778888888888888877763211 0 1 45678888888888888888888888888776
Q ss_pred cchhhHHhH
Q 002697 211 MPSALFVSM 219 (891)
Q Consensus 211 ~~~~~~~~~ 219 (891)
.+.-+...+
T Consensus 76 ~~s~v~~~~ 84 (187)
T PF12830_consen 76 HESLVESRY 84 (187)
T ss_pred hHHHHHHHH
Confidence 555444333
No 263
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.16 E-value=63 Score=40.95 Aligned_cols=188 Identities=12% Similarity=0.047 Sum_probs=109.9
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhcC--ChH-HHHHHHHHHHHHHhhccc-
Q 002697 51 NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA--DRH-IRSTVGTIVSVVVQLGGI- 126 (891)
Q Consensus 51 ~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~--~~~-vr~~~a~~l~~i~~~~~~- 126 (891)
..+...+.+ ...+.+|++.++.+.+.+.. |..+..-.+-. .+-..+.|. +.. -...+..+++....+.++
T Consensus 54 ~~l~s~~~~--~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~---~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~ 127 (2067)
T KOG1822|consen 54 QQLISRLTN--GAGPPTRKLISVAIARLISN-GDSFSLYSRLN---SCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRM 127 (2067)
T ss_pred HHHHHHHcc--CCCchhHHHHHHHHHHHHhc-cchhhHHHHHH---HhhhhhhcCCCccHHHHHhhccchHHHHHHhhHh
Confidence 346666664 67889999999999888877 77665443322 222333342 222 233444566666665543
Q ss_pred --CchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHH
Q 002697 127 --AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (891)
Q Consensus 127 --~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l 204 (891)
....+.+..+.+..+......|...+.++...++.++..-... .....++-.....+.+.+-.||.++.+|+
T Consensus 128 ~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~------~~~k~i~l~~k~~lld~s~~v~iaa~rc~ 201 (2067)
T KOG1822|consen 128 IGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAAT------ATHKAIRLIAKNSLLDRSFNVKIAAARCL 201 (2067)
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHH------HHHHHHHHHHhhhhhhhhHHHHHHhHHHH
Confidence 2356677777777776666777777778877777665321100 11233444444445566667999999999
Q ss_pred HHHhcccchhh-HHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 002697 205 NQFIMLMPSAL-FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (891)
Q Consensus 205 ~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~ 250 (891)
..+....+..+ ...++..-..++......+..+|...++++..+..
T Consensus 202 ~a~s~~~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla 248 (2067)
T KOG1822|consen 202 KAFSNLGGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLA 248 (2067)
T ss_pred HHHHhhcCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHh
Confidence 88876544333 22333333334444444556666666666655543
No 264
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=89.69 E-value=11 Score=33.25 Aligned_cols=77 Identities=8% Similarity=0.051 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHcc------cchhHHHHHHHHHHHHH
Q 002697 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK------YQRRNLRIVYDAIGTLA 548 (891)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~il~~l~~~l~~------~~~~~~~~~~~al~~l~ 548 (891)
-...+..+.+.+.++++.|+..|...|..++++|+..+...+ ..++..+++.+.. ....++..+++.+....
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 356788899999999999999999999999999988775433 4566667777743 34567778888888888
Q ss_pred HHhcc
Q 002697 549 DAVGF 553 (891)
Q Consensus 549 ~~~~~ 553 (891)
...+.
T Consensus 116 ~~f~~ 120 (139)
T cd03567 116 LELPH 120 (139)
T ss_pred HHhcc
Confidence 87763
No 265
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=43 Score=41.43 Aligned_cols=231 Identities=14% Similarity=0.100 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-cccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccC
Q 002697 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (891)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~-~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~ 555 (891)
++.-+..+++.+.-.++..+..|..-+..+++.. .+...+.++.....+.+++.+.+..++....+.+..+...++...
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677778887778889999999999888765 233333344444444556667888888899999999999999988
Q ss_pred CchhhhhhhhHHHHHHHHcCCCCCcch-HhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhcCccc------
Q 002697 556 NQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAA------ 628 (891)
Q Consensus 556 ~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~------ 628 (891)
. ||+..++|+..-.... -+..+ .++...+.. ...++..+.+-..+..-+..+........++++-
T Consensus 119 s--p~LK~li~~wl~~~~d---~~~~vs~aa~~sf~~---~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~ 190 (1312)
T KOG0803|consen 119 S--PFLKSLIPPWLGGQFD---LDYPVSEAAKASFKD---GFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTL 190 (1312)
T ss_pred h--HHHHhhhhhhhheecc---cchHHHHHHHHHHHh---hcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhc
Confidence 7 8999999876443221 12222 222222222 1113333333222222221111111111111111
Q ss_pred CCCCch-----hHHHHHhhhHHHHHHHHhhhHHhh-----hccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhh
Q 002697 629 GAQYDK-----EFVVCCLDLLSGLAEGLGSGIESL-----VAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHL 698 (891)
Q Consensus 629 ~~e~d~-----~~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 698 (891)
..| +. .+..+++-++..+....|..-.-. .....--..+-..+++..+.++.+.+.++-.++......+
T Consensus 191 s~E-e~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~ 269 (1312)
T KOG0803|consen 191 SSE-ELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRV 269 (1312)
T ss_pred chH-HHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhc
Confidence 111 11 222345555555554444321111 0000011223344567888999999888888887776553
Q ss_pred HHhH-HHHHHHHHHhcCCC
Q 002697 699 QARL-SDFLDIAAKQLNTP 716 (891)
Q Consensus 699 ~~~~-~~i~~~l~~~l~~~ 716 (891)
.+.- ..+.+.+....++.
T Consensus 270 ~~~~~~~l~~~~~~~~~~~ 288 (1312)
T KOG0803|consen 270 MESEKNYLKPVLLGSIDSL 288 (1312)
T ss_pred chhhhhHhhHHHHcccccc
Confidence 3333 34444445444443
No 266
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=89.50 E-value=0.78 Score=30.38 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002697 479 KVLMGLLKRILDTNKRVQEAACSAFATLE 507 (891)
Q Consensus 479 ~~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (891)
..++.|++.|.+.+..|+..|+++|.+++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999886
No 267
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.66 E-value=51 Score=37.85 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHHHHHhhc--ccCch-----HHHHHHHHHHhc----cCChhHHhHHHHHHHHHHhhchhccccCCCCC
Q 002697 105 ADRHIRSTVGTIVSVVVQLG--GIAGW-----LELLQALVTCLD----SNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (891)
Q Consensus 105 ~~~~vr~~~a~~l~~i~~~~--~~~~w-----~~ll~~L~~~l~----~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (891)
+...+|..+...++.++... ....+ .++++.+.+.+. ..+...+...+++|+.+-.
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~------------- 475 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH------------- 475 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-------------
Confidence 35678888888888888753 22233 345555555443 3455566777888865432
Q ss_pred CCcchhhhHHHHHHhhc---CCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002697 174 AECPINIFLPRLLQFFQ---SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (891)
Q Consensus 174 ~~~~~~~l~~~l~~~l~---~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~ 247 (891)
+..++.+..++. ..+..+|..|+.+|..+....|....+.+ ++.+.+ .+.+.++|..|+..|..
T Consensus 476 -----~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l---~~i~~n--~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 476 -----PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL---LPIYLN--RAEPPEVRMAAVLVLME 542 (574)
T ss_pred -----hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH---HHHHcC--CCCChHHHHHHHHHHHh
Confidence 334455555554 23678999999999988776665444332 222211 23457899888776653
No 268
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.59 E-value=9 Score=33.70 Aligned_cols=77 Identities=17% Similarity=0.103 Sum_probs=57.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHH--HHHHHHHHhcCCC-CCcCchhHhhhHHHHHHHHHHhc
Q 002697 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS--DFLDIAAKQLNTP-KLKETVSVANNACWAIGELAVKA 739 (891)
Q Consensus 663 ~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~-~~~~~~~v~~~a~~alg~l~~~~ 739 (891)
.....|.+.+++.++.+...|+.++..++++||..|...+. .++..+.+.+... .. +..||..+...+.......
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~--~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKY--DPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHHHh
Confidence 36677778888899999999999999999999987754332 4555566666543 22 5689999998888887766
Q ss_pred hh
Q 002697 740 RQ 741 (891)
Q Consensus 740 ~~ 741 (891)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 54
No 269
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=88.36 E-value=73 Score=39.30 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=45.4
Q ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHH--HHHHHhhhcCCCChHHHHHHHHHHHhhHHH
Q 002697 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (891)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 463 (891)
.++..+.+.|++.. ..+--.+|-+|-.++..+++. ..+|-+ .++.+.+.+.+.|..+-..+..+|-++..+
T Consensus 530 NCLq~LLQ~LKS~S---LTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHS---LTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hHHHHHHHHhhhcc---eEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 35566666666655 555555666666666655543 223322 567788888888888888877777776654
No 270
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=88.12 E-value=9.7 Score=33.86 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHcc-cchhHHHHHHHHHHHHHHHhcc
Q 002697 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVGF 553 (891)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~il~~l~~~l~~-~~~~~~~~~~~al~~l~~~~~~ 553 (891)
-...+..+.+.+..+++.|+..|...|..++++|+..+...+ ..+++.|.+++.+ ....++..+++.+...+...+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 467888999999999999999999999999999987664432 4566777777753 4456777888888888877764
Q ss_pred c
Q 002697 554 E 554 (891)
Q Consensus 554 ~ 554 (891)
.
T Consensus 119 ~ 119 (142)
T cd03569 119 K 119 (142)
T ss_pred C
Confidence 3
No 271
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.44 E-value=3.7 Score=34.67 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=48.2
Q ss_pred HHHHHhhhc-CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002697 434 IVAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (891)
Q Consensus 434 i~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (891)
++..++..| .+.++.+...||.=||.|+.+.+. ....++ ..-..++..|.++++.||..|..|+..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455555555 334778888899999999998864 222221 244556777888999999999999998764
No 272
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=87.29 E-value=11 Score=33.21 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=58.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhH--HHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhch
Q 002697 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR 740 (891)
Q Consensus 663 ~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~ 740 (891)
..+..|.+.+++.++.+...|+.++..++++||..|...+ ..++..+.+.+.+... ...|++.+...+...+...+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~--~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP--LPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHHHHHHHc
Confidence 3677788888899999999999999999999998776544 3577777777776642 22388888888887776654
No 273
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.29 E-value=7.9 Score=34.04 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=70.6
Q ss_pred hcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhH
Q 002697 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (891)
Q Consensus 103 ~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~ 182 (891)
.+++...-..++..+.. . +..=.+.+..|...+.++++.++..|+.+|..+++.++..+..++. ...++
T Consensus 14 ~~~D~~~il~icd~I~~----~-~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~------s~~fl 82 (133)
T cd03561 14 EEPDWALNLELCDLINL----K-PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVA------DKEFL 82 (133)
T ss_pred CCccHHHHHHHHHHHhC----C-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHh------hHHHH
Confidence 34555544444443332 1 3344577888999999999999999999999999999886544321 13566
Q ss_pred HHHHHhhcC---CCHHHHHHHHHHHHHHhcccc
Q 002697 183 PRLLQFFQS---PHTSLRKLSLGSVNQFIMLMP 212 (891)
Q Consensus 183 ~~l~~~l~~---~~~~vr~~al~~l~~~~~~~~ 212 (891)
..+.+.+.. .++.||..++..+..+....+
T Consensus 83 ~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 83 LELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 667777765 478999999999999987654
No 274
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=86.98 E-value=42 Score=35.65 Aligned_cols=213 Identities=12% Similarity=0.117 Sum_probs=126.0
Q ss_pred CHHHHHHHHHHHHHhHHhhhccCChhhHHHHH-----HhHhhhhh-c-CChHHHHHHHHHHHHHHhhc-ccCch-HHHHH
Q 002697 64 SVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK-----SELLPCLG-A-ADRHIRSTVGTIVSVVVQLG-GIAGW-LELLQ 134 (891)
Q Consensus 64 ~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~-----~~ll~~L~-~-~~~~vr~~~a~~l~~i~~~~-~~~~w-~~ll~ 134 (891)
+.++|..|.-.+|..+...- ....+. --+...|. + .+..-|.++-..+..+.... ++... ..++.
T Consensus 38 ~~~vraa~yRilRy~i~d~~------~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvr 111 (371)
T PF14664_consen 38 SKEVRAAGYRILRYLISDEE------SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVR 111 (371)
T ss_pred cHHHHHHHHHHHHHHHcCHH------HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHH
Confidence 48999999999988775531 111111 12333443 2 34556889999999988773 34444 46788
Q ss_pred HHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchh
Q 002697 135 ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (891)
Q Consensus 135 ~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~ 214 (891)
.+.....+++...|..++.+|..++-..++.... ..-+..+.+.+.++..++....+.++-.++......
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~P~lv~~----------~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLNPELVAE----------CGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHH----------cCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 8999998888889999999998887766654321 122566777777665566666667776666543211
Q ss_pred --hHHh--HHHHHHHHHHhh---CCCCH--HHHHHHHHHHHHHHhhChhhhhHhHH--HHHHHHHhhcCCCCHHHHHHHH
Q 002697 215 --LFVS--MDQYLQGLFLLS---NDPSA--EVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTDDDVALEAC 283 (891)
Q Consensus 215 --~~~~--~~~~l~~l~~~~---~~~~~--~v~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~~v~~~a~ 283 (891)
+.+. ++.++..+...- ..++. +....+..++..+....+..+.-..+ .-+..++..+..+..++|...+
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 1111 122222222220 11122 34455666677777666654321111 2344455566667777888888
Q ss_pred HHHHHhhcc
Q 002697 284 EFWHSYFEA 292 (891)
Q Consensus 284 ~~l~~l~~~ 292 (891)
+.+..+..-
T Consensus 262 dll~dllri 270 (371)
T PF14664_consen 262 DLLFDLLRI 270 (371)
T ss_pred HHHHHHHCC
Confidence 887776554
No 275
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=86.86 E-value=27 Score=33.09 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=45.3
Q ss_pred HHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchH
Q 002697 639 CCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV 696 (891)
Q Consensus 639 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 696 (891)
.++.+++.+.+.+|....+++.. ++..+...-.+++...|+.+-.++|..++.+|.
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~--~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGp 74 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKP--ILKTLGDLRESEDFSFRKELEQVLGAAIRAMGP 74 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHH--HHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCH
Confidence 46777888899999888777765 666676666677788899999999999999984
No 276
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=86.84 E-value=2.6 Score=37.54 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcC-CCHHHHHHHHHHHHHHh
Q 002697 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFI 208 (891)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~ 208 (891)
.+.+..|..-+.+.++.+...|+.+|..+++.++..+..++. ...++..+.+.+.+ .++.|+..++..+..+.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva------sk~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVA------SRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHh------hHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 567888888899999999999999999999999987655432 36788888888888 68899999999999998
Q ss_pred cccc
Q 002697 209 MLMP 212 (891)
Q Consensus 209 ~~~~ 212 (891)
...+
T Consensus 110 ~~f~ 113 (144)
T cd03568 110 DEFK 113 (144)
T ss_pred HHhC
Confidence 6543
No 277
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=86.76 E-value=1.6 Score=34.86 Aligned_cols=57 Identities=30% Similarity=0.315 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHH
Q 002697 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 463 (891)
-..|.+++..|+++....+-.+-++++.++..+....+| ...++..+-.+++.|-+.
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 457999999999999999888888999999999998887 557888888899888764
No 278
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=86.65 E-value=4.5 Score=32.22 Aligned_cols=65 Identities=22% Similarity=0.367 Sum_probs=52.8
Q ss_pred HHHHHHh-hCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 002697 223 LQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (891)
Q Consensus 223 l~~l~~~-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~ 287 (891)
+..+... ...++.++|...++|+..++....+.+..-.+.++..+.....+.++++...|++.+.
T Consensus 19 L~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 19 LKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4444443 3456789999999999999999999998888899988888888888888888887654
No 279
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=86.64 E-value=23 Score=31.53 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHcccch-h---HHHHHHHHHHHH
Q 002697 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQR-R---NLRIVYDAIGTL 547 (891)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~il~~l~~~l~~~~~-~---~~~~~~~al~~l 547 (891)
...-..++..+-+.|..+++.++..|...+..++++|+..+...+ ..++..|.+++..... . ++..+++.+...
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 344578889999999999999999999999999999988775543 4577777777765433 2 677888888888
Q ss_pred HHHhccc
Q 002697 548 ADAVGFE 554 (891)
Q Consensus 548 ~~~~~~~ 554 (891)
....+..
T Consensus 117 ~~~f~~~ 123 (140)
T PF00790_consen 117 AEAFKSD 123 (140)
T ss_dssp HHHTTTS
T ss_pred HHHHCCC
Confidence 8887543
No 280
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=86.32 E-value=10 Score=35.00 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=75.0
Q ss_pred hhHHhHHHHHHHHHHhhchhccccC--CCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHH
Q 002697 145 INHMEGAMDALSKICEDIPQVLDSD--VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQY 222 (891)
Q Consensus 145 ~~~r~~al~~L~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~ 222 (891)
...+..++.++..+.+..+..+.+. .+.+..-.-..+.+.+++.+.++++.+-..+++++..+.......+...++.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999988888887766531 01111122355677777777777788889999999999877777777777778
Q ss_pred HHHHHH-hhCCCC--HHHHHHHHHHHHHHHh
Q 002697 223 LQGLFL-LSNDPS--AEVRKLVCAAFNLLIE 250 (891)
Q Consensus 223 l~~l~~-~~~~~~--~~v~~~~~~~l~~l~~ 250 (891)
++.++. .+..++ ...|..+++++..++.
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 877776 454332 4577778999988885
No 281
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.31 E-value=48 Score=34.95 Aligned_cols=199 Identities=15% Similarity=0.081 Sum_probs=100.4
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHh----hcc
Q 002697 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQ----LGG 125 (891)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~----~~~ 125 (891)
...+..++.. +.++.....+.-.|-..+.. +..+.-+.+-+.+.++|.+....+|+.-...++.++. ...
T Consensus 24 ~~~l~~~~~K--E~nE~aL~~~l~al~~~~~~----~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 24 VQGLSPLLSK--ESNEAALSALLSALFKHLFF----LSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHh--hcCHHHHHHHHHHHHHHHHH----hCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 3445555553 44555554444443333222 2333334555677789999988899999999999887 222
Q ss_pred cCchHHHHHHHHHHh----ccCChhHH----hHHHHHHHHHHhhchhccccC--CC-C-CCC-cchhhhHHHHHHhhcCC
Q 002697 126 IAGWLELLQALVTCL----DSNDINHM----EGAMDALSKICEDIPQVLDSD--VP-G-LAE-CPINIFLPRLLQFFQSP 192 (891)
Q Consensus 126 ~~~w~~ll~~L~~~l----~~~~~~~r----~~al~~L~~l~~~~~~~~~~~--~~-~-~~~-~~~~~l~~~l~~~l~~~ 192 (891)
......+++.|.+.+ .++.+... .++.-.+. +...-....... .. . ..+ +..--+-++++.-+ .
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~ 174 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C
Confidence 233344455544444 45433322 22222222 100000000000 00 0 000 00001123344332 3
Q ss_pred CHHHHHHHHHHHHHHhcccchhhHHh-HHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhChhhhh
Q 002697 193 HTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLE 257 (891)
Q Consensus 193 ~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~--~~~v~~~~~~~l~~l~~~~~~~~~ 257 (891)
+.+...-.++++..+....+...... ...+-+.++.++.++ ...+|+.++..+..+....+..+.
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~ 242 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLS 242 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHH
Confidence 34444556666666655444333222 244555666666555 789999999999999988887654
No 282
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.13 E-value=2.1 Score=39.57 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhc---h
Q 002697 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA---R 740 (891)
Q Consensus 664 l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~---~ 740 (891)
.++++...+.+.+..-|-.|-.-+-|+....++.+.|.+++++..+...|... +.++...+...|..++... |
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr----d~ev~~~~Lkvlq~lv~~~~~vG 190 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR----DDEVICRTLKVLQQLVVSVGCVG 190 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHhccccc
Confidence 55556666655555556667777888888889999999999999999999887 6688888888888877554 4
Q ss_pred hhhhhHHHHHHHHH
Q 002697 741 QEISPIVMTVVLCL 754 (891)
Q Consensus 741 ~~~~~~~~~il~~l 754 (891)
.++.||..++++.+
T Consensus 191 ~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 191 AALVPFYRQLLPVL 204 (262)
T ss_pred hhhhhHHHHhhhhh
Confidence 77889998888544
No 283
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.66 E-value=70 Score=38.31 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhhcchhhhhhhHHHHHHH-HhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-HHHHHHHHH
Q 002697 409 REAAVLALGAIAEGCIKGLYPHLSEIVAF-LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLK 486 (891)
Q Consensus 409 r~aa~~~l~~l~~~~~~~~~~~l~~i~~~-l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~ 486 (891)
|...+...........+.+...+..++.. ++...+|-.|.+|..++..||-....+++. ++ ...+..+--
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~--------Fl~dsYLKYiGW 333 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEI--------FLSDSYLKYIGW 333 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHH--------HhcchHHHHhcc
Confidence 56666666666665556666666777664 355678999999998887777666655432 11 234555666
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHH
Q 002697 487 RILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAF 529 (891)
Q Consensus 487 ~l~d~~~~v~~~a~~al~~l~~~~--~~~~~~~l~~il~~l~~~l 529 (891)
.|+|.+..||..+..+|..+.+.- ...+.-+...+=.+++...
T Consensus 334 tLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa 378 (1048)
T KOG2011|consen 334 TLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA 378 (1048)
T ss_pred eeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999872 2233344444444444444
No 284
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.56 E-value=15 Score=32.65 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=56.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhH--HHHHHHHHHhcCCCCCcCchh--HhhhHHHHHHHHHHh
Q 002697 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVS--VANNACWAIGELAVK 738 (891)
Q Consensus 663 ~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~--v~~~a~~alg~l~~~ 738 (891)
.....|.+.+++.++.+...|+.++..++++||..|...+ ..++..+.+.+.+... ... ||+.+...+...+..
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~--~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKT--DPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTT--HHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCC--CchhHHHHHHHHHHHHHHHH
Confidence 3677788888899999999999999999999998776544 3566666665554432 223 888888888887766
Q ss_pred ch
Q 002697 739 AR 740 (891)
Q Consensus 739 ~~ 740 (891)
.+
T Consensus 120 f~ 121 (140)
T PF00790_consen 120 FK 121 (140)
T ss_dssp TT
T ss_pred HC
Confidence 63
No 285
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=85.31 E-value=14 Score=32.52 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHcccch-h-HHHHHHHHHHHHHHHh
Q 002697 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQR-R-NLRIVYDAIGTLADAV 551 (891)
Q Consensus 476 ~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~il~~l~~~l~~~~~-~-~~~~~~~al~~l~~~~ 551 (891)
.-...+..+.+.+.++++.++..|...+..++++|+..+...+ ..+++.|.+++..... + ++..+++.+...+...
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999999999988775433 4577777777765433 3 6668888888888877
Q ss_pred cc
Q 002697 552 GF 553 (891)
Q Consensus 552 ~~ 553 (891)
+.
T Consensus 114 ~~ 115 (133)
T smart00288 114 KN 115 (133)
T ss_pred cC
Confidence 54
No 286
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=85.17 E-value=33 Score=35.89 Aligned_cols=174 Identities=16% Similarity=0.061 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHh
Q 002697 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (891)
Q Consensus 109 vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 188 (891)
.+..+..++..|... =+..+...+++..+.....+++.|..++...+.....++-+.| +.....++.++.-
T Consensus 42 ~~~~g~~l~~~iL~~--------~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~f-d~~~~~l~kll~~ 112 (330)
T PF11707_consen 42 FQSYGLELIRSILQN--------HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSF-DFSLKSLPKLLTP 112 (330)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhc-CCchhhHHHHhcc
Confidence 555555555554432 1677888888888877889999999998843322221111111 0111223333221
Q ss_pred hc-C-CC--------HHHHHHHHHHHHHHhcccchhhHHhH---HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhh
Q 002697 189 FQ-S-PH--------TSLRKLSLGSVNQFIMLMPSALFVSM---DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (891)
Q Consensus 189 l~-~-~~--------~~vr~~al~~l~~~~~~~~~~~~~~~---~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~ 255 (891)
=. . .. +.+|...++.+-.++...+......+ ..++..++..+..++.++-..++++|..-+-..+ .
T Consensus 113 ~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~ 191 (330)
T PF11707_consen 113 RKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-S 191 (330)
T ss_pred ccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-C
Confidence 11 0 11 38999999999999887665444322 2347778887777777777778887765332222 1
Q ss_pred hhHhH------HHHHHHHHhhcCCCC----HHHHHHHHHHHHHhhcc
Q 002697 256 LEPHL------RNLFEYMLQVNKDTD----DDVALEACEFWHSYFEA 292 (891)
Q Consensus 256 ~~~~l------~~l~~~~~~~~~~~~----~~v~~~a~~~l~~l~~~ 292 (891)
+.... +..+..+.......+ ..++..+-+|+..++..
T Consensus 192 v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 192 VSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 11110 122333333333333 36788888888888765
No 287
>PF05536 Neurochondrin: Neurochondrin
Probab=85.12 E-value=73 Score=35.98 Aligned_cols=183 Identities=14% Similarity=0.087 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHc---CcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHhhhc
Q 002697 367 LRKCSAAALDVLSNVF---GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLL 442 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l 442 (891)
++..|...|..++..- ...-+-.-+|.+.+.+.+.++ .....-++.+|..++. .++.-...+. ..++.+...+
T Consensus 73 ~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~--~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 73 YLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSD--LETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEII 149 (543)
T ss_pred HHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHH
Confidence 6777888887776621 112233456777777766551 3667778888888873 3332222211 1334444433
Q ss_pred CCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc------cchH
Q 002697 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE------ELAP 516 (891)
Q Consensus 443 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~------~~~~ 516 (891)
.+ ++.....|+..+..+........-+ .....+..+++.+-..+.......+-..|.-|..|....+. .-..
T Consensus 150 ~~-~~~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~ 227 (543)
T PF05536_consen 150 PN-QSFQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK 227 (543)
T ss_pred Hh-CcchHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence 33 6777888888887776654321101 23444556666666666555555677778888888877631 1123
Q ss_pred hHHHHHHHHHHHHcccchh-HHHHHHHHHHHHHHHhccc
Q 002697 517 RLEIILQHLMMAFGKYQRR-NLRIVYDAIGTLADAVGFE 554 (891)
Q Consensus 517 ~l~~il~~l~~~l~~~~~~-~~~~~~~al~~l~~~~~~~ 554 (891)
....+...+..++++.-.+ .+..++...+.+.+..|.+
T Consensus 228 W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 228 WLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 5677888888888765444 4447788888888887764
No 288
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=84.84 E-value=20 Score=37.27 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=48.9
Q ss_pred cchhhhHHHHHHhhcCCCHHHHHHHHHHHHH-Hhc-ccchhhHHhHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhC
Q 002697 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ-FIM-LMPSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVR 252 (891)
Q Consensus 176 ~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~-~~~-~~~~~~~~~~~~~l~~l~~~~~~-~~~~v~~~~~~~l~~l~~~~ 252 (891)
+....++..+-.++++++-.|...|+...++ ++. .+.+.-...++.+.+.+...... -+..+...++.++..+.+..
T Consensus 337 k~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd 416 (457)
T KOG2085|consen 337 KIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMD 416 (457)
T ss_pred HHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455566667777788888888888776643 222 11111111123334444443322 24566777888888888888
Q ss_pred hhhhhHhH
Q 002697 253 PSFLEPHL 260 (891)
Q Consensus 253 ~~~~~~~l 260 (891)
++.|....
T Consensus 417 ~~LFeec~ 424 (457)
T KOG2085|consen 417 PKLFEECL 424 (457)
T ss_pred HHHHHHHH
Confidence 87776443
No 289
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=84.36 E-value=11 Score=33.33 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=71.6
Q ss_pred hhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhh
Q 002697 101 CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (891)
Q Consensus 101 ~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (891)
.+.+++...--.++..+. .. +..=.+.+..|...+++.++.+...|+.+|..+++.++..+..++. ...
T Consensus 13 ~l~~~dw~~ileicD~In----~~-~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva------s~~ 81 (139)
T cd03567 13 SNREEDWEAIQAFCEQIN----KE-PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVG------KFR 81 (139)
T ss_pred cCCCCCHHHHHHHHHHHH----cC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHH------hHH
Confidence 344556655444444442 22 2233467888888899999999999999999999999987654432 256
Q ss_pred hHHHHHHhhcC------CCHHHHHHHHHHHHHHhccc
Q 002697 181 FLPRLLQFFQS------PHTSLRKLSLGSVNQFIMLM 211 (891)
Q Consensus 181 l~~~l~~~l~~------~~~~vr~~al~~l~~~~~~~ 211 (891)
++..+.+.+.. ++..|+..++..+..+...+
T Consensus 82 Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 82 FLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 77778887753 47899999999999998654
No 290
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=84.16 E-value=59 Score=34.13 Aligned_cols=117 Identities=12% Similarity=0.083 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCC
Q 002697 194 TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD 273 (891)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~ 273 (891)
.++....+.+|..++.+....-...-+.++..+...+.+ ...+.++.+|.-.+-.-|+.+.+.++.++..+.+....
T Consensus 211 ~D~~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt 287 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTT 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Confidence 467777788888877653211112224556666666544 23455667777667777888888888888777655443
Q ss_pred CCHHHHHHHHHHHHHhhccC-Cch-hhHHhhhhhhHHHHHhhcc
Q 002697 274 TDDDVALEACEFWHSYFEAQ-LPH-ENLKEFLPRLVPVLLSNMI 315 (891)
Q Consensus 274 ~~~~v~~~a~~~l~~l~~~~-~~~-~~~~~~l~~li~~ll~~l~ 315 (891)
..+....+||+..++..| ... +....-+..++.++++++.
T Consensus 288 --~~~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 288 --PNMAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred --hhhHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 346677899999998875 322 2223345556666666544
No 291
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=84.13 E-value=57 Score=33.93 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCc-------chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhh----hhHHHHHHHHh
Q 002697 371 SAAALDVLSNVFGD-------EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY----PHLSEIVAFLI 439 (891)
Q Consensus 371 a~~~l~~l~~~~~~-------~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~----~~l~~i~~~l~ 439 (891)
...++..+....++ .++..++.....++++...+.|..|..=...+..+...|.+.+. ..+..++..+.
T Consensus 92 vL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~ 171 (319)
T PF08767_consen 92 VLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIV 171 (319)
T ss_dssp HHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555443 22344444445566554444589999999999999998876552 45677889999
Q ss_pred hhcCCCChHHHHHHHHHHHhhHHHHhhh---hCCCcchhhHHHHHHHHHHHhcCCC
Q 002697 440 PLLDDKFPLIRSISCWTLSRFSKFIVQD---IGHQNGREQFEKVLMGLLKRILDTN 492 (891)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~d~~ 492 (891)
-++++++..|...++.++..+.+.+... ........++-.++..++..+.|+.
T Consensus 172 wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 172 WGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 9999999999999999999998877641 0111245566777788888887764
No 292
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=84.04 E-value=16 Score=32.44 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=57.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhH--HHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhch
Q 002697 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR 740 (891)
Q Consensus 663 ~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~ 740 (891)
..+..|.+-+++.++.+...|+.++..++++||..|...+ ..++..+.+.+.+.. +..|++.++..+...+...+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~---~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTK---NEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccC---CHHHHHHHHHHHHHHHHHhC
Confidence 3667777788888999999999999999999997765433 356666666665422 56899998888888776655
Q ss_pred h
Q 002697 741 Q 741 (891)
Q Consensus 741 ~ 741 (891)
.
T Consensus 118 ~ 118 (142)
T cd03569 118 N 118 (142)
T ss_pred C
Confidence 3
No 293
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=83.98 E-value=1.7 Score=28.93 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=22.8
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHH
Q 002697 179 NIFLPRLLQFFQSPHTSLRKLSLGSV 204 (891)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~al~~l 204 (891)
+.+...+.+.+.|+++.||.+|++.+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57788899999999999999998763
No 294
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.76 E-value=71 Score=34.06 Aligned_cols=117 Identities=21% Similarity=0.145 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHh
Q 002697 409 REAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (891)
Q Consensus 409 r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 488 (891)
-.+|+..+-.+++...-.++-.-..++..+++.+.-.+..+-......+.+++-+.... ..---..++..+++.+
T Consensus 280 Lrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK-----~~M~~~~iveKL~klf 354 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENK-----IVMEQNGIVEKLLKLF 354 (791)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccch-----HHHHhccHHHHHHHhc
Confidence 34566677788887765555455668888999998777766666666666665433211 1111235777888888
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcccchH--hHHHHHHHHHHHHccc
Q 002697 489 LDTNKRVQEAACSAFATLEEEAAEELAP--RLEIILQHLMMAFGKY 532 (891)
Q Consensus 489 ~d~~~~v~~~a~~al~~l~~~~~~~~~~--~l~~il~~l~~~l~~~ 532 (891)
...++..+......+-++.-.. .+.| .-..++|.+...+.+.
T Consensus 355 p~~h~dL~~~tl~LlfNlSFD~--glr~KMv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 355 PIQHPDLRKATLMLLFNLSFDS--GLRPKMVNGGLLPHLASLLDSD 398 (791)
T ss_pred CCCCHHHHHHHHHHhhhccccc--cccHHHhhccchHHHHHHhCCc
Confidence 8888888888877776664332 2222 2234566666666544
No 295
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.55 E-value=99 Score=37.97 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=64.2
Q ss_pred cCChHHHHHHHHHHHHHHhhcc---cCchHHHHHHHHHHhccC---ChhHHhHHHHHHHHHHhhchhccccCCCCCCCcc
Q 002697 104 AADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSN---DINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (891)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~---~~~w~~ll~~L~~~l~~~---~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 177 (891)
.+...+|...-.++-.|....+ ...|+.+++.|....... ...+...++.+|..++.++-..+.. ..
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~-------sc 925 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPT-------SC 925 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCCh-------HH
Confidence 3455566655577777776653 245999999988777655 3467778889998888876654322 34
Q ss_pred hhhhHHHHHHhhcC-CCHHHHHHHHHHHHHHhcc
Q 002697 178 INIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIML 210 (891)
Q Consensus 178 ~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~~~ 210 (891)
+..++..+..+... .+..+-..|+..+..+..+
T Consensus 926 i~~lidtl~~fs~QktdlNISltAi~lfWtvsDf 959 (1610)
T KOG1848|consen 926 ILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDF 959 (1610)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence 55666666665543 4556666666666555443
No 296
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.39 E-value=83 Score=34.59 Aligned_cols=199 Identities=16% Similarity=0.100 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHhcc-cc--hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhh
Q 002697 194 TSLRKLSLGSVNQFIML-MP--SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (891)
Q Consensus 194 ~~vr~~al~~l~~~~~~-~~--~~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~ 270 (891)
+.+-...++.+..|+.+ ++ +.-...+..++.+++..+.+++..||..+|+.|..+.....+.=......++..+..-
T Consensus 61 ~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R 140 (885)
T COG5218 61 PSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER 140 (885)
T ss_pred CCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33344455566666553 22 1223455667888888888889999999999998887765543333345566666666
Q ss_pred cCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhcccCCCCCCCCCCCcccccccCCC
Q 002697 271 NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHG 350 (891)
Q Consensus 271 ~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 350 (891)
+-|.+..||++|..++..+-+-....+ .....++..++ .+.+
T Consensus 141 ~~DRE~~VR~eAv~~L~~~Qe~~~nee---n~~~n~l~~~v---qnDP-------------------------------- 182 (885)
T COG5218 141 LFDREKAVRREAVKVLCYYQEMELNEE---NRIVNLLKDIV---QNDP-------------------------------- 182 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHhccCChH---HHHHHHHHHHH---hcCc--------------------------------
Confidence 678888999999888776654321111 11111221111 1110
Q ss_pred CCCCCCCCccccccccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhh
Q 002697 351 SENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPH 430 (891)
Q Consensus 351 ~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~ 430 (891)
+-.+|+.|..-+ ....... |.+.+...+-+. ...|-.-..+|..+...+...+.++
T Consensus 183 -------------S~EVRr~allni-----~vdnsT~----p~IlERarDv~~--anRr~vY~r~Lp~iGd~~~lsi~kr 238 (885)
T COG5218 183 -------------SDEVRRLALLNI-----SVDNSTY----PCILERARDVSG--ANRRMVYERCLPRIGDLKSLSIDKR 238 (885)
T ss_pred -------------HHHHHHHHHHHe-----eeCCCcc----hhHHHHhhhhhH--HHHHHHHHHHhhhhcchhhccccce
Confidence 112677765443 1122333 444444444331 3334444466777766555444444
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHH
Q 002697 431 LSEIVAFLIPLLDDKFPLIRSISCWTLS 458 (891)
Q Consensus 431 l~~i~~~l~~~l~d~~~~vr~~a~~~l~ 458 (891)
+- .+-..+.|....|+.++..++.
T Consensus 239 i~----l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 239 IL----LMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred eh----hhhhcchhhhhhHHHHHHHHHH
Confidence 32 4555788888899999888875
No 297
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=81.92 E-value=40 Score=30.63 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=31.5
Q ss_pred HHHHHHHhHHH-HhchHhhHHhHHHHHHHHHHhcCCCC
Q 002697 681 QSAFALLGDLA-RVCPVHLQARLSDFLDIAAKQLNTPK 717 (891)
Q Consensus 681 ~~a~~~l~~l~-~~~~~~~~~~~~~i~~~l~~~l~~~~ 717 (891)
+.|+..+.++. ...++.+.|++..+++.+.+.|.++.
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~ 97 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPE 97 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCch
Confidence 56888888887 66778889999999999999999874
No 298
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=81.90 E-value=4.5 Score=33.55 Aligned_cols=62 Identities=16% Similarity=0.309 Sum_probs=50.1
Q ss_pred hhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhh-HHhhhhhhHHHHHhhccC
Q 002697 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHEN-LKEFLPRLVPVLLSNMIY 316 (891)
Q Consensus 253 ~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~l~~li~~ll~~l~~ 316 (891)
++.+.||++.++.++...|.+-.+++|..++.|+.-+.++ .+.. +..+..++++..+..+.-
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~--~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEH--APDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHH--CChHhHhhhHHHHHHHHHHHHCC
Confidence 4567899999999999999999999999999999999887 4444 566666777776665553
No 299
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=81.76 E-value=48 Score=32.00 Aligned_cols=158 Identities=10% Similarity=0.043 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhc-CChHHH
Q 002697 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA-ADRHIR 110 (891)
Q Consensus 32 ~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~-~~~~vr 110 (891)
.|+-|.....+.....+....+..+.. +...+.|.+|+.++...... .+.... ..+-..+.. .+..+.
T Consensus 35 lr~lak~~~~~~~~~~~~~~l~~~L~~---~~~~E~~~la~~il~~~~~~----~~~~~~----~~~~~~~~~~~~W~~~ 103 (213)
T PF08713_consen 35 LRKLAKDIYKELKLSEELYELADELWE---SGYREERYLALLILDKRRKK----LTEEDL----ELLEKWLPDIDNWATC 103 (213)
T ss_dssp HHHHHHHHHHHHCTSHHHHHHHHHHHC---SSCHHHHHHHHHHHHHCGGG------HHHH----HHHHHCCCCCCCHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHcC---CchHHHHHHHHHHhHHHhhh----hhHHHH----HHHHHHhccCCcchhh
Confidence 444444445554444222333344443 45689999999887543311 222211 222223332 466666
Q ss_pred HHH-HHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhh
Q 002697 111 STV-GTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (891)
Q Consensus 111 ~~~-a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 189 (891)
..+ ..+++.+.... +.+.+.+.+.+.|+++-.|..++.++...... ...+.++..+...+
T Consensus 104 D~~~~~~~~~~~~~~-----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--------------~~~~~~l~~~~~~~ 164 (213)
T PF08713_consen 104 DSLCSKLLGPLLKKH-----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--------------EDFDELLEIIEALL 164 (213)
T ss_dssp HHHTHHHHHHHHHHH-----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--------------CHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhh-----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHc
Confidence 665 55566654432 77888899999999999898887776443332 12356677777777
Q ss_pred cCCCHHHHHHHHHHHHHHhcccchhhHHhH
Q 002697 190 QSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (891)
Q Consensus 190 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 219 (891)
.+++.-||.+.--+|..+....|+...+.+
T Consensus 165 ~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l 194 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIGKKDPDEVLEFL 194 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 888999999999999999887766554443
No 300
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=81.75 E-value=5.9 Score=38.43 Aligned_cols=88 Identities=18% Similarity=0.304 Sum_probs=56.9
Q ss_pred cccHHHHH-HHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhc
Q 002697 364 VWNLRKCS-AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL 442 (891)
Q Consensus 364 ~~~~r~~a-~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 442 (891)
.|.+.... ..+++.+.... +.+.+.+.+.+.+++. |..| +|+.++..... ....+.++..+...+
T Consensus 99 ~W~~~D~~~~~~~~~~~~~~-----~~~~~~~~~W~~s~~~--w~rR-~~~v~~~~~~~------~~~~~~~l~~~~~~~ 164 (213)
T PF08713_consen 99 NWATCDSLCSKLLGPLLKKH-----PEALELLEKWAKSDNE--WVRR-AAIVMLLRYIR------KEDFDELLEIIEALL 164 (213)
T ss_dssp CHHHHHHHTHHHHHHHHHHH-----GGHHHHHHHHHHCSSH--HHHH-HHHHCTTTHGG------GCHHHHHHHHHHHCT
T ss_pred cchhhhHHHHHHHHHHHHhh-----HHHHHHHHHHHhCCcH--HHHH-HHHHHHHHHHH------hcCHHHHHHHHHHHc
Confidence 47655544 44444443322 5677888888888772 5544 44433322222 156677888888899
Q ss_pred CCCChHHHHHHHHHHHhhHHHHh
Q 002697 443 DDKFPLIRSISCWTLSRFSKFIV 465 (891)
Q Consensus 443 ~d~~~~vr~~a~~~l~~~~~~~~ 465 (891)
.|++..||.+..|+|..++...+
T Consensus 165 ~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHCTT-H
T ss_pred CCchHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999998877543
No 301
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.69 E-value=36 Score=34.08 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=68.3
Q ss_pred HHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcc
Q 002697 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (891)
Q Consensus 394 l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 473 (891)
+..++.+.+ +.+|.+|+.-+..+..+....+..+-...++.+.+.++++.+ -.-|+.++.+++.... ..
T Consensus 8 lv~ll~~~s---P~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~------l~ 76 (353)
T KOG2973|consen 8 LVELLHSLS---PPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE------LR 76 (353)
T ss_pred HHHHhccCC---hHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH------HH
Confidence 455666777 999999987666555543344455556678888999998877 4456677877776432 12
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002697 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (891)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (891)
...+..++..++..+.|+....-...|..+.++.+
T Consensus 77 ~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 77 KKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 33444456666666677655666667777777654
No 302
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=81.40 E-value=40 Score=39.05 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhhChhhhhHhHH-HHHHHHHhhcC-CCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHh
Q 002697 235 AEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNK-DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLS 312 (891)
Q Consensus 235 ~~v~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~ 312 (891)
+..|..++..|+.++...|..+..... .++.-++.++. |.+..+...|+.++..+.=. .+..+.++++.++.+...
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~--ip~~l~~~L~~Lf~If~R 159 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH--IPSSLGPHLPDLFNIFGR 159 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHH
Confidence 578899999999999998877655444 56666666654 56666677778887776644 667788999999888766
Q ss_pred hcc
Q 002697 313 NMI 315 (891)
Q Consensus 313 ~l~ 315 (891)
.+.
T Consensus 160 l~~ 162 (668)
T PF04388_consen 160 LLS 162 (668)
T ss_pred HHH
Confidence 553
No 303
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=81.30 E-value=99 Score=34.73 Aligned_cols=81 Identities=11% Similarity=0.140 Sum_probs=53.4
Q ss_pred cCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcch-hhhh-hhHHHHHHHHhhhcCCCChHHHHHHHHHHHh
Q 002697 382 FGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLY-PHLSEIVAFLIPLLDDKFPLIRSISCWTLSR 459 (891)
Q Consensus 382 ~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~-~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 459 (891)
+.+..+..++-.+...+.+..+ -..|-+.+..++.+++... .... +..+.+....-..|.|.++.++..|+.++++
T Consensus 472 l~~~~i~qv~~~l~~l~~~~pp--~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~ 549 (559)
T PF14868_consen 472 LDPQLIEQVLTELTSLFKSEPP--DHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQ 549 (559)
T ss_pred cChHHHHHHHHHHHHHHhhCCC--ccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 3445555666666666654321 3477777777887776432 2222 3445555555556799999999999999999
Q ss_pred hHHHH
Q 002697 460 FSKFI 464 (891)
Q Consensus 460 ~~~~~ 464 (891)
|++..
T Consensus 550 FAe~T 554 (559)
T PF14868_consen 550 FAERT 554 (559)
T ss_pred HhccC
Confidence 99854
No 304
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=81.08 E-value=13 Score=33.77 Aligned_cols=141 Identities=19% Similarity=0.185 Sum_probs=80.7
Q ss_pred Hhhhhh--cCChHHHHHHHHHHHHHHhhcccCchHHH-HHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCC
Q 002697 98 LLPCLG--AADRHIRSTVGTIVSVVVQLGGIAGWLEL-LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (891)
Q Consensus 98 ll~~L~--~~~~~vr~~~a~~l~~i~~~~~~~~w~~l-l~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~ 174 (891)
++..|. ...+.+|..+.-+++.+.... +..+.+. -.++...+..++......++.++..+....++.-..=+
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~-~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~---- 82 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAA-REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF---- 82 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC----
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH----
Confidence 444444 357789999988888886332 3334443 44455555544444555677777777665544211100
Q ss_pred CcchhhhHHHHHHhhc--CCCHHHHHHHHHHHHHHhcccchhhHHh-HHHHHHHHHHhhC-CCCHH-HHHHHHHHHHH
Q 002697 175 ECPINIFLPRLLQFFQ--SPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSN-DPSAE-VRKLVCAAFNL 247 (891)
Q Consensus 175 ~~~~~~l~~~l~~~l~--~~~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~-~~~~~-v~~~~~~~l~~ 247 (891)
..+.+++.+...+. ..+..+...+++++..-...- ..... ...+++.+-.... +++.. +|..+.-+|..
T Consensus 83 --~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~--~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 --LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK--SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp --CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH--HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred --hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH--HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 12567788888887 678899999999998866331 11111 2233555555563 34444 66666655543
No 305
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=80.52 E-value=6.6 Score=32.53 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=50.2
Q ss_pred HHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHh-hHHhHHHHHHHHHHhcCCC
Q 002697 655 IESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVH-LQARLSDFLDIAAKQLNTP 716 (891)
Q Consensus 655 ~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~ 716 (891)
+.|+++. ++..+...+.+=.++||..|+.++.-+.+++|+. +..+..++++.....+...
T Consensus 5 l~p~~~~--l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 5 LSPFFPL--LMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHhHHHH--HHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4555554 7777778888889999999999999999999988 7788888999888888765
No 306
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=79.34 E-value=36 Score=29.17 Aligned_cols=73 Identities=10% Similarity=0.073 Sum_probs=53.0
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHH---HHHHHHHhhC--------CCCHHHHHHHHHHHH
Q 002697 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ---YLQGLFLLSN--------DPSAEVRKLVCAAFN 246 (891)
Q Consensus 178 ~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~---~l~~l~~~~~--------~~~~~v~~~~~~~l~ 246 (891)
...++..|.+-|++.++.|+..++++|..++...++.|...+.. ++..+.+.-. +....||..|-+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 36778888999999999999999999999998888777765543 3344433322 123578888888876
Q ss_pred HHHh
Q 002697 247 LLIE 250 (891)
Q Consensus 247 ~l~~ 250 (891)
.+..
T Consensus 116 ~if~ 119 (122)
T cd03572 116 AIFS 119 (122)
T ss_pred HHhc
Confidence 6643
No 307
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=79.30 E-value=38 Score=31.25 Aligned_cols=100 Identities=13% Similarity=0.037 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHHhcccchhhHH---------hH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHH
Q 002697 193 HTSLRKLSLGSVNQFIMLMPSALFV---------SM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (891)
Q Consensus 193 ~~~vr~~al~~l~~~~~~~~~~~~~---------~~-~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~ 262 (891)
+...|..+++.+..+++..++.+.. .+ +.+.+.+...+.+++..+-..++..+..+.......++..++.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888776555441 11 2345666666655668888889999999988888888877777
Q ss_pred HHHHHHh-hcCCC--CHHHHHHHHHHHHHhhcc
Q 002697 263 LFEYMLQ-VNKDT--DDDVALEACEFWHSYFEA 292 (891)
Q Consensus 263 l~~~~~~-~~~~~--~~~v~~~a~~~l~~l~~~ 292 (891)
++..++. .++.. ...-|..++|++..+++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 7777665 44432 234677789999988875
No 308
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=79.15 E-value=27 Score=29.95 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCc-------CchhHhhhHHHHHHHH
Q 002697 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLK-------ETVSVANNACWAIGEL 735 (891)
Q Consensus 664 l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~-------~~~~v~~~a~~alg~l 735 (891)
++..|.+.+++.++.|+.-++.+|..++...+..|..++..=...+..+..-.... -+..||..|-.++..|
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999988888888765444433332222111 1446676666655543
No 309
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.85 E-value=1.5e+02 Score=37.34 Aligned_cols=233 Identities=14% Similarity=0.125 Sum_probs=123.7
Q ss_pred CCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhh----hcCChHHHHHHHHHHHHHH
Q 002697 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL----GAADRHIRSTVGTIVSVVV 121 (891)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L----~~~~~~vr~~~a~~l~~i~ 121 (891)
+.+|+.-.-++... +.+.++|-+..-.....+...|.. +++.+ .+.+..+-......+..+.
T Consensus 1034 q~~fl~Pfe~im~~--s~s~~Irelv~rC~~~nikSGWk~------------if~i~~~aA~~~~~~iv~~~fe~v~~i~ 1099 (1514)
T KOG0929|consen 1034 QKDFLRPFEHIMKR--SSSAEIRELVVRCISSNIKSGWKN------------IFKIFTTAASDSSKNIVELAFETVSKIL 1099 (1514)
T ss_pred HHhhcCcchHHhhc--cCcchhHHHHHhhhhhhhhhhhhH------------HHHHHHHhhccchhhHHHHhHHHHHHHH
Confidence 44554444455543 567788887777777777777754 23322 2334444455555555554
Q ss_pred hhcccCc-------hHHHHHHHHHHhcc-CChhHHhHHHHHHHHHHhhchhc-cccCCC----CCCCcchhhhHHHHHH-
Q 002697 122 QLGGIAG-------WLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQV-LDSDVP----GLAECPINIFLPRLLQ- 187 (891)
Q Consensus 122 ~~~~~~~-------w~~ll~~L~~~l~~-~~~~~r~~al~~L~~l~~~~~~~-~~~~~~----~~~~~~~~~l~~~l~~- 187 (891)
...+... ..+.++.+.....+ ..+..-..++..+...+....+. ...... ..+.......+|.++.
T Consensus 1100 ~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~l 1179 (1514)
T KOG0929|consen 1100 QELFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQL 1179 (1514)
T ss_pred HHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhh
Confidence 4433322 23344444444332 22333334444443333332222 000000 0001112334454433
Q ss_pred --hhcCCCHHHHHHHHHHHHHHhcccchhhHHhH-HHHHHHHHHhhC----CC-----CH---HHHHHHHHHHHHHHhhC
Q 002697 188 --FFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSN----DP-----SA---EVRKLVCAAFNLLIEVR 252 (891)
Q Consensus 188 --~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~----~~-----~~---~v~~~~~~~l~~l~~~~ 252 (891)
...+....+|..+++.+..++...++.|.+.+ ..++..++...+ +. ++ .....|+..++.+...+
T Consensus 1180 s~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~ 1259 (1514)
T KOG0929|consen 1180 SKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQF 1259 (1514)
T ss_pred hHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33456789999999999998877666555433 122223332221 11 11 23345666667777777
Q ss_pred hhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 002697 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (891)
Q Consensus 253 ~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (891)
.+.+...++.++..+..+....+..+.....+++..++..
T Consensus 1260 ~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~ 1299 (1514)
T KOG0929|consen 1260 FKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSS 1299 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHh
Confidence 7777777788887777788888888887778887776654
No 310
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=78.31 E-value=3.7 Score=27.35 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.6
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHH
Q 002697 432 SEIVAFLIPLLDDKFPLIRSISCWT 456 (891)
Q Consensus 432 ~~i~~~l~~~l~d~~~~vr~~a~~~ 456 (891)
+.+...+...+.|+++.||.+|..+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3678888999999999999999765
No 311
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=78.29 E-value=96 Score=34.77 Aligned_cols=101 Identities=19% Similarity=0.124 Sum_probs=66.2
Q ss_pred hhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhh
Q 002697 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (891)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 467 (891)
..-+..+.+++-+.+ ...+.+|+..+|....+..+. .+..+..+...+.+++..+|.+++.-||-....
T Consensus 414 d~gL~qldkylys~~---~~ikaGaLLgigi~~~gv~ne----~dpalALLsdyv~~~~s~~ri~aIlGLglayaG---- 482 (878)
T KOG2005|consen 414 DKGLEQLDKYLYSDE---SYIKAGALLGIGISNSGVFNE----CDPALALLSDYLQSSSSIHRIGAILGLGLAYAG---- 482 (878)
T ss_pred hhhHHHHHHHhhcCC---chhhhccceeeeeeccccccc----cCHHHHHHHHhccCCCceeehHHhhhhHHhhcC----
Confidence 456777888888777 777888888888777665543 344566677788888999999988777744321
Q ss_pred hCCCcchhhHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHH
Q 002697 468 IGHQNGREQFEKVLMGLLKRILDTNKR--VQEAACSAFATL 506 (891)
Q Consensus 468 ~~~~~~~~~~~~~l~~l~~~l~d~~~~--v~~~a~~al~~l 506 (891)
..-++++..+...+.|.+.. |...|..+++.+
T Consensus 483 -------sq~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~I 516 (878)
T KOG2005|consen 483 -------SQREEVLELLSPIMFDTKSPMEVVAFASLSLGMI 516 (878)
T ss_pred -------CchHHHHHHHhHHhcCCCCchhHHHHHHhhccee
Confidence 12234444555666665544 555555555543
No 312
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=78.19 E-value=2.5 Score=27.70 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.7
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHhhH
Q 002697 434 IVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (891)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~~~ 461 (891)
.++.+++.++++++.++..++|+|++++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4667777778889999999999999875
No 313
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=78.08 E-value=57 Score=37.84 Aligned_cols=80 Identities=24% Similarity=0.307 Sum_probs=64.4
Q ss_pred chhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhc-CCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHH
Q 002697 633 DKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM-DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAK 711 (891)
Q Consensus 633 d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 711 (891)
.+..|..++.+++.++..-+.....+... .+++-|++|++ |.+..+...|+.+|-.+...++..+.+|++.++.+..+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t-~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~R 159 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQT-PLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGR 159 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcC-hhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 45677888899998888766666555543 57777777775 66778889999999999999999999999999999888
Q ss_pred hc
Q 002697 712 QL 713 (891)
Q Consensus 712 ~l 713 (891)
.+
T Consensus 160 l~ 161 (668)
T PF04388_consen 160 LL 161 (668)
T ss_pred HH
Confidence 76
No 314
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=78.05 E-value=10 Score=30.62 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=48.1
Q ss_pred CCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHH
Q 002697 674 DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (891)
Q Consensus 674 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~ 736 (891)
++.+.+|+.|..+++.+++.++......-+.++..+.+.+.+++. +....-.|+.+|..+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~--~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKK--PLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHH
Confidence 457899999999999999998866666667888889998887643 4566777777777764
No 315
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=77.36 E-value=46 Score=29.57 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHH-HHHHHcc---cchhHHHHHHHHHHHHHH
Q 002697 477 FEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRL--EIILQH-LMMAFGK---YQRRNLRIVYDAIGTLAD 549 (891)
Q Consensus 477 ~~~~l~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~il~~-l~~~l~~---~~~~~~~~~~~al~~l~~ 549 (891)
-...+..+.+.+.. .++.|+..|...+..++++|+..+...+ ..++.. |.+.+.. ....++..+++.+.....
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 45788888888874 5889999999999999999988775433 356665 6666653 223566678888888888
Q ss_pred Hhccc
Q 002697 550 AVGFE 554 (891)
Q Consensus 550 ~~~~~ 554 (891)
..+..
T Consensus 116 ~f~~~ 120 (141)
T cd03565 116 AFRGS 120 (141)
T ss_pred HhCCC
Confidence 77543
No 316
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.33 E-value=29 Score=29.54 Aligned_cols=94 Identities=12% Similarity=0.149 Sum_probs=57.2
Q ss_pred cccHHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhc-cCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHH--HHHHHhh
Q 002697 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIP 440 (891)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~--i~~~l~~ 440 (891)
.|++-+....+...=+..+.+.-. .++..+.+.+. +.+ ...-..|+.=+|.++...+.. +..+.. .=..+..
T Consensus 19 ~WSP~H~se~FW~ENa~kf~~~~~-~llk~L~~lL~~s~d---~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~ 93 (119)
T PF11698_consen 19 EWSPVHKSEKFWRENADKFEENNF-ELLKKLIKLLDKSDD---PTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVME 93 (119)
T ss_dssp ---GGGG-HHHHHHHSGGGSSGGG-HHHHHHHHHH-SHHH---HHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHH
T ss_pred cccCCCCCccHHHHHHHHHHHccc-HHHHHHHHHHccCCC---cceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHH
Confidence 466666666666555555544222 34455555553 334 777778888889888876643 223322 3456788
Q ss_pred hcCCCChHHHHHHHHHHHhhHH
Q 002697 441 LLDDKFPLIRSISCWTLSRFSK 462 (891)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~~~~ 462 (891)
.++++++.||..|+.|+..+..
T Consensus 94 Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 94 LMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HTS-SSHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 8899999999999999988753
No 317
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=76.55 E-value=90 Score=31.52 Aligned_cols=69 Identities=17% Similarity=0.129 Sum_probs=43.7
Q ss_pred HHHHHhhhcCCCChH-HHHHHHHHHHhhHHHHhhhhCCCcchhhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002697 434 IVAFLIPLLDDKFPL-IRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (891)
Q Consensus 434 i~~~l~~~l~d~~~~-vr~~a~~~l~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (891)
++..+...++..++. .-..||.-++++.+..++. ...+ -..=..++..++.++++|+-.|.+|+..++.
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~------~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI------NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH------HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 555566666655553 3445777788877766542 1111 1233445667788899999999999987664
No 318
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=76.53 E-value=1.5e+02 Score=34.01 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-hccCC
Q 002697 219 MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY-FEAQL 294 (891)
Q Consensus 219 ~~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l-~~~~~ 294 (891)
...|++.|-.+..++=+.++..++..+-.+....|+.=. .++..+++.+.+++..+...|.-.+..+ +.+|.
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc
Confidence 445667776666777789999999999998888887533 4555566667777777766665555554 44443
No 319
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=76.31 E-value=1e+02 Score=32.19 Aligned_cols=104 Identities=13% Similarity=-0.001 Sum_probs=59.2
Q ss_pred hHHHHHhhhHHHHHHHHhhh-HHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhch---H--hhHHhHHHHHHH
Q 002697 635 EFVVCCLDLLSGLAEGLGSG-IESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP---V--HLQARLSDFLDI 708 (891)
Q Consensus 635 ~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~---~--~~~~~~~~i~~~ 708 (891)
++|.+.++.+-.+....... ...++.+..++..+.+.+..+++++-...+.++.+-+-.-. . ...-+=+..+..
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 78888888777766654443 33455554567777788877777777777777765332211 1 111122344455
Q ss_pred HHHhcCCCCCcCchhHhhhHHHHHHHHHHh
Q 002697 709 AAKQLNTPKLKETVSVANNACWAIGELAVK 738 (891)
Q Consensus 709 l~~~l~~~~~~~~~~v~~~a~~alg~l~~~ 738 (891)
+..........+...+++.+-..+-.++..
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 555433331111236777777777777644
No 320
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=75.46 E-value=92 Score=31.15 Aligned_cols=185 Identities=16% Similarity=0.154 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-----c---ccchHhHHHHHHHHHHHHcccc----hhHHHHHHH
Q 002697 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-----A---EELAPRLEIILQHLMMAFGKYQ----RRNLRIVYD 542 (891)
Q Consensus 475 ~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~-----~---~~~~~~l~~il~~l~~~l~~~~----~~~~~~~~~ 542 (891)
..++.+-+.+++++..+. ..+.+...+..+.... + ..+.-.+-..+|.++..+.+.. ........+
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~ 137 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAE 137 (262)
T ss_pred CCchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 456778888889887644 3455666677776542 1 1233345567788888877666 133335567
Q ss_pred HHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHHHHH
Q 002697 543 AIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFT-QFAQPVFQRCINIIQTQQLA 621 (891)
Q Consensus 543 al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~ 621 (891)
.++.+++..+. +-+..+|..+ .... - ...-+.+..++..+.+.|. .|.-+++..++..+.+.
T Consensus 138 ~La~~a~~~~~-----~~La~il~~y----a~~~--f---r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~--- 200 (262)
T PF14225_consen 138 ALAQVAEAQGL-----PNLARILSSY----AKGR--F---RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENG--- 200 (262)
T ss_pred HHHHHHHhCCC-----ccHHHHHHHH----HhcC--C---CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC---
Confidence 77777754332 2333343322 2111 1 1233445555666666664 45566777777777753
Q ss_pred hhcCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhch
Q 002697 622 KVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP 695 (891)
Q Consensus 622 ~~~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 695 (891)
-..++..++.++..+.....-. .++.+ .++..+.+.++.+. ...|..++..++...+
T Consensus 201 -----------~~w~~~~~L~iL~~ll~~~d~~-~~~~~--dlispllrlL~t~~---~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 201 -----------PPWLRRKTLQILKVLLPHVDMR-SPHGA--DLISPLLRLLQTDL---WMEALEVLDEIVTRSG 257 (262)
T ss_pred -----------cHHHHHHHHHHHHHHhccccCC-CCcch--HHHHHHHHHhCCcc---HHHHHHHHHHHHhhcc
Confidence 2356677788888777765544 22333 36777777776544 3457777776665544
No 321
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=75.13 E-value=50 Score=28.40 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=51.7
Q ss_pred chhhhhHHHHHHhhc-cCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHH
Q 002697 385 EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (891)
Q Consensus 385 ~~~~~l~~~l~~~l~-~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 462 (891)
.+++.++|.+...+. +.. ...|-++++.++.++...+= -.+.+..++..+.+....... ...+..++..++.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~---~d~~~a~ymIl~~La~k~~L-~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q 74 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSS---PDLQAAAYMILSVLASKVPL-SDEVLNALMESILKNWTQETV--QRQALICLIVLCQ 74 (121)
T ss_pred cHHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 457789999999998 556 88999999999999976541 134556666767666655544 4567777777764
No 322
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=74.63 E-value=37 Score=32.18 Aligned_cols=134 Identities=19% Similarity=0.164 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCCh--HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHH
Q 002697 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP--LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 483 (891)
-++|..|..++..+... ...-.++++. .+.+...+..++. ..-..+.+++.++...+. .+.|...++..
T Consensus 21 DrvR~~A~~~l~~ll~~-~~~~~~~ip~-~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~-------~~~y~~~ll~G 91 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHS-QDPTIPHIPH-REELQDIFPSESEASLNWSSSSEYFPRLVKLLD-------LPEYRYSLLSG 91 (193)
T ss_pred HHHHHHHHHHHHHHhcC-CCccccCCCc-HHHHHHHcccccccccccCCHHHHHHHHHHHhc-------cHHHHHHHHhH
Confidence 57899999999888732 2111112211 1222222222211 112224445555554332 56778888888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccch--hHHHHHHHHHHHHHH
Q 002697 484 LLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR--RNLRIVYDAIGTLAD 549 (891)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~--~~~~~~~~al~~l~~ 549 (891)
++-.....+..+...+..||..++... ..-...+..++..+...+++... ++...+++++..+..
T Consensus 92 lv~S~G~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~ 158 (193)
T PF12612_consen 92 LVVSAGGLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLS 158 (193)
T ss_pred HHhcCCCCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHh
Confidence 888888777788888888888888654 22223455666666666665432 222244555555544
No 323
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=74.35 E-value=51 Score=31.86 Aligned_cols=70 Identities=10% Similarity=0.176 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCC-ChHHHHHHHHHHhHHHHhchHhhHHhH--HHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHH
Q 002697 664 LRDMLLQCCMDD-ASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (891)
Q Consensus 664 l~~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~ 737 (891)
+.|++....++. ....|-.++++||.+++.....+..|+ .+++|.+++.+... ++..+..|.+-++.|..
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G----SelSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG----SELSKTVATFILQKILL 197 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc----cHHHHHHHHHHHHHHhh
Confidence 666666555543 456899999999999999887777776 48999999998876 56778888888887763
No 324
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=74.16 E-value=95 Score=30.66 Aligned_cols=86 Identities=16% Similarity=0.346 Sum_probs=57.0
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHhcccch------------------------------hhHHhHHHHHHHHHHhh
Q 002697 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS------------------------------ALFVSMDQYLQGLFLLS 230 (891)
Q Consensus 181 l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~------------------------------~~~~~~~~~l~~l~~~~ 230 (891)
+=..++..+.+.++.+|..+++.+..++-.... .+...-..++..++..+
T Consensus 44 lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l 123 (239)
T PF11935_consen 44 LKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVL 123 (239)
T ss_dssp HHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 334566777888999999999999887632110 11122235677777777
Q ss_pred CCC--CHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHH
Q 002697 231 NDP--SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEY 266 (891)
Q Consensus 231 ~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~ 266 (891)
.++ +......++.+|..++...|.++...++.+..+
T Consensus 124 ~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~ 161 (239)
T PF11935_consen 124 QSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSF 161 (239)
T ss_dssp C-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 654 466778889999999999998765544444443
No 325
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=73.74 E-value=96 Score=30.53 Aligned_cols=188 Identities=14% Similarity=0.096 Sum_probs=106.5
Q ss_pred cCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHH
Q 002697 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (891)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (891)
..++.+....-..+..++.+.. ..-+.++..|..+...+....+..+++.+..+.+.-.. ..+. +.
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r------------~f~~-L~ 77 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR------------HFPF-LQ 77 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch------------HHHH-HH
Confidence 4677888888888888888765 66677888888888777766655666666666553221 1122 22
Q ss_pred HHHHh--------hcC--CCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhC
Q 002697 184 RLLQF--------FQS--PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVR 252 (891)
Q Consensus 184 ~l~~~--------l~~--~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~v~~~~~~~l~~l~~~~ 252 (891)
.++.. ..+ ...+...+...++..++...|+ +...+++.+...+ ++.++.++..+++.+..+++..
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 22222 111 1234445545566777766665 3445566666666 6677788888999999998655
Q ss_pred hhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHh
Q 002697 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLS 312 (891)
Q Consensus 253 ~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~ 312 (891)
.-.+......+.+.+ ..+..+.+....++++.-+.......+....+-.+++..+.+
T Consensus 154 vvd~~s~w~vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~ 210 (234)
T PF12530_consen 154 VVDFYSAWKVLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWE 210 (234)
T ss_pred hccHHHHHHHHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHh
Confidence 444444444444332 223445554444555444433322223333344455555543
No 326
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=73.00 E-value=13 Score=33.79 Aligned_cols=130 Identities=15% Similarity=0.040 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhH--HHHHHHHhhhcC-
Q 002697 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLD- 443 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~- 443 (891)
+|..+.-++..+....++..-..+-.++...+.+.+ ......++.++..+-.+.++.....+ +.+++.+.....
T Consensus 21 ~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~---~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~ 97 (157)
T PF11701_consen 21 VRSHALVILSKLLDAAREEFKEKISDFIESLLDEGE---MDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR 97 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---CCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccc---chhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc
Confidence 789898888888666666666667777777776554 44566666777777666654332221 235555666665
Q ss_pred -CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhc-CCCHH-HHHHHHHHHHH
Q 002697 444 -DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKR-VQEAACSAFAT 505 (891)
Q Consensus 444 -d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-d~~~~-v~~~a~~al~~ 505 (891)
.++..+..+++.++..-+..-. -........++.|-+.++ +++.. +|..|+-.|..
T Consensus 98 ~~~~~~~~~~~lell~aAc~d~~------~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACIDKS------CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTTSHH------HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccHH------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 6777888888888875543211 012223444555555564 34455 77777766653
No 327
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=72.50 E-value=56 Score=29.54 Aligned_cols=105 Identities=10% Similarity=0.127 Sum_probs=60.3
Q ss_pred chHhHHHHHHHHHHHHcccch-----------hHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCC-CCCcc
Q 002697 514 LAPRLEIILQHLMMAFGKYQR-----------RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLP-NSDKD 581 (891)
Q Consensus 514 ~~~~l~~il~~l~~~l~~~~~-----------~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~ 581 (891)
+..+.+.+...++.+++-... .+-..+.+++-.++-.+.+.... |.+-.++..-...+.... .....
T Consensus 4 i~~~~~~l~~~~l~ald~R~~~~~~~~~~~v~~vE~~v~~~~~~lV~KLnE~~FR-PlF~~l~dWA~~~l~~~~~~~~~~ 82 (153)
T PF08146_consen 4 ISKNSPQLFDFFLQALDFRRQQRSKFDLEDVDEVESSVISAFVSLVLKLNEATFR-PLFLKLVDWATSGLPKSDSSGSRA 82 (153)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHcccchhH-hHHHHHHHHHcccCCcccCcCchh
Confidence 344555666666666632111 11225567777777666665443 455544433222111111 11111
Q ss_pred -hHhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Q 002697 582 -LFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQ 619 (891)
Q Consensus 582 -~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~ 619 (891)
.......+..++..++.-|.||+..+++.+.++|+...
T Consensus 83 R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~ 121 (153)
T PF08146_consen 83 RLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFN 121 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 24566777888888888999999999999998888653
No 328
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.41 E-value=1.1e+02 Score=30.79 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=60.2
Q ss_pred HhHhhhhhcCChHHHHHHHHHHHHHHhhcccCch----HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCC
Q 002697 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (891)
Q Consensus 96 ~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w----~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (891)
..+...+.++++.||+.+...+..+... +...| -.+++.+.+++.+..+ -+-|..++..+.....-.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~------ 76 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR------ 76 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH------
Confidence 3566778889999999877655555443 33333 4578899999988776 344666776666643211
Q ss_pred CCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 002697 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (891)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (891)
+..+..++..++..+.++....-...+..+.++..
T Consensus 77 ---~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 77 ---KKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred ---HHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 01223344555555566644444444455555543
No 329
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=72.29 E-value=69 Score=28.26 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=61.8
Q ss_pred HHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-ccc--
Q 002697 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEE-- 513 (891)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~-~~~-- 513 (891)
.++..|+-....++.+|..++.. ...-+.+.+.++..+.+++...|...++.+..+++.+ ...
T Consensus 12 ~~L~~L~aS~qSi~kaa~fAlk~--------------~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~ 77 (139)
T PF12243_consen 12 QLLRRLNASQQSIQKAAQFALKN--------------RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKY 77 (139)
T ss_pred HHHHHcchhHHHHHHHHHHHHHc--------------cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccc
Confidence 34455555666677777666654 2233577788888888888888999999999999987 223
Q ss_pred chHhHHHHHHHHHHHHcc---cch---hHHHHHHHHHHHHH
Q 002697 514 LAPRLEIILQHLMMAFGK---YQR---RNLRIVYDAIGTLA 548 (891)
Q Consensus 514 ~~~~l~~il~~l~~~l~~---~~~---~~~~~~~~al~~l~ 548 (891)
-.+|...+-..|.+++.. .+. .++..+...+..+-
T Consensus 78 ~~~Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~ 118 (139)
T PF12243_consen 78 NYPYVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWS 118 (139)
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHH
Confidence 566766655555444432 221 34445555555444
No 330
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=71.86 E-value=27 Score=27.81 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=45.6
Q ss_pred hcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHH
Q 002697 672 CMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAI 732 (891)
Q Consensus 672 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~al 732 (891)
.+..+.++|+..+.++..++...+..+..-.+.++..+.....+. ++++...|..++
T Consensus 27 ~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~----~e~lv~~af~~~ 83 (86)
T PF09324_consen 27 SNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDN----DESLVRLAFQIV 83 (86)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCC----CccHHHHHHHHH
Confidence 445688999999999999999999999888888998888877765 456666655544
No 331
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=71.29 E-value=38 Score=32.24 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=47.1
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHh
Q 002697 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (891)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 465 (891)
+.+.....+++. |..|.+....+.-+.. ....+.++..+-..+.|++..||.+..|+|..++...+
T Consensus 108 ~~~~~w~~s~~~--~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENE--WVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcH--HHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 667777777662 6655554443332322 24567788888888999999999999999999887643
No 332
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=70.76 E-value=8.2 Score=25.13 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002697 480 VLMGLLKRILDTNKRVQEAACSAFATLE 507 (891)
Q Consensus 480 ~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (891)
.++.+++.+.+++..++..++++|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677888888888999999999999875
No 333
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=70.72 E-value=25 Score=30.28 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=51.4
Q ss_pred hhHHHHHHHHhhhcC-CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002697 429 PHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (891)
Q Consensus 429 ~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (891)
.+++.++|.+...+. ...+..|.++.-.+++++...+ -..+.++.++..+.+....... ...+..++..++
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~ 73 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETV--QRQALICLIVLC 73 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHH
Confidence 367789999999999 7888999999999999998654 2444555555555555444332 455666677666
Q ss_pred HH
Q 002697 508 EE 509 (891)
Q Consensus 508 ~~ 509 (891)
+.
T Consensus 74 q~ 75 (121)
T PF12397_consen 74 QS 75 (121)
T ss_pred Hc
Confidence 44
No 334
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=70.39 E-value=1.2e+02 Score=38.83 Aligned_cols=167 Identities=16% Similarity=0.109 Sum_probs=92.5
Q ss_pred HHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHhcCCCCCcCchh
Q 002697 644 LSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVS 723 (891)
Q Consensus 644 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~ 723 (891)
+.......+.-+.+|++. ++.+...++++.++.+++.|..+...+...+.. + +-..++..|+..+.+. +..
T Consensus 418 l~~~f~~~~~vL~~~f~s--iL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds-~--~qqeVv~~Lvthi~sg----~~~ 488 (1426)
T PF14631_consen 418 LDQTFKGHSEVLKDYFPS--ILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS-Y--CQQEVVGALVTHIGSG----NSQ 488 (1426)
T ss_dssp HHHHHHHHHHHHTTSHHH--HHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H-H--HHHHHHHHHHHHHHH------HH
T ss_pred HHHHHhhhHHHHHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc-h--hHHHHHHHHHHHHcCC----cHH
Confidence 334444444556666665 888888888999999999888877777766532 1 2356777776666433 233
Q ss_pred HhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHHhhcc
Q 002697 724 VANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALS 803 (891)
Q Consensus 724 v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~l~ 803 (891)
-...|...|-.++...+..+.||..-+. .+++.+.+ ++..-...+...++.+....+..-...-+++--.+-+.|.
T Consensus 489 ev~~aL~vL~~L~~~~~~~l~~fa~~l~-giLD~l~~---Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLs 564 (1426)
T PF14631_consen 489 EVDAALDVLCELAEKNPSELQPFATFLK-GILDYLDN---LSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLS 564 (1426)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTHHHHH-GGGGGGGG-----HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHHHHhc---CCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhc
Confidence 3468889999999887777777754333 33333332 2233333455556665543322111112222222333343
Q ss_pred CCCCchHHHHHHHHHHHHHhh
Q 002697 804 MIRDDTEKEDAFRGLCAMVKA 824 (891)
Q Consensus 804 ~~~~~~e~~~~~~~l~~l~~~ 824 (891)
. .+...|...+-|.+.+++.
T Consensus 565 s-~~~~~K~~GIIGav~~i~~ 584 (1426)
T PF14631_consen 565 S-SNPKYKRIGIIGAVMMIKH 584 (1426)
T ss_dssp --SSHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHhHHHHHHHHHH
Confidence 3 4455666666666666664
No 335
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=70.25 E-value=1e+02 Score=29.28 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=86.6
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHH
Q 002697 431 LSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKR--VQEAACSAFATLEE 508 (891)
Q Consensus 431 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~--v~~~a~~al~~l~~ 508 (891)
+.+++..+++.....-.+||..|..++.++...-...+ ..-++. +.+.+.+..++.. .-..+..++..++.
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~---~~ip~~----~~L~~i~~~~~~~~~~w~~~~~~F~~l~~ 77 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTI---PHIPHR----EELQDIFPSESEASLNWSSSSEYFPRLVK 77 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---cCCCcH----HHHHHHcccccccccccCCHHHHHHHHHH
Confidence 34455555555555667899999999999883221100 011122 2222222221110 01122333343332
Q ss_pred HhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHH
Q 002697 509 EAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLEC 588 (891)
Q Consensus 509 ~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 588 (891)
-. .+..|...++..++-......+...+.+..++-..+...... +.-...++..++..++....+++...+++++
T Consensus 78 LL--~~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~---~~~~~~v~~~l~~il~~~~~~dRv~vP~l~t 152 (193)
T PF12612_consen 78 LL--DLPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDS---PEELEQVLSDLLSILKENLRNDRVVVPLLKT 152 (193)
T ss_pred Hh--ccHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHhCCCCCeeecHHHH
Confidence 21 133577788888888777777777777777777666543221 2567788888888888766566655677777
Q ss_pred HHHHHHH
Q 002697 589 FTSIAQA 595 (891)
Q Consensus 589 l~~i~~~ 595 (891)
+..+...
T Consensus 153 l~~Ll~~ 159 (193)
T PF12612_consen 153 LDFLLSS 159 (193)
T ss_pred HHHHHhC
Confidence 7665543
No 336
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=70.22 E-value=2e+02 Score=32.64 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhc-CCChH----HHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhc--cCCh---hhHHHHHHhHhhh
Q 002697 32 DKSQIWQQLQQYSQ-FPDFN----NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK--SMSP---SNQQYIKSELLPC 101 (891)
Q Consensus 32 ~r~~a~~~L~~~~~-~p~~~----~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~--~~~~---~~~~~i~~~ll~~ 101 (891)
--|+....|.++.. .|+.. ..+..+|- +..-..|-.-.-...|.+...-. ...+ +..+.+...+...
T Consensus 278 Gpk~islFl~kls~l~p~i~lrq~~~~~~LLd---ses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ER 354 (1128)
T COG5098 278 GPKDISLFLNKLSELSPGIMLRQYEHFDELLD---SESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVER 354 (1128)
T ss_pred ChHHHHHHHHHHhhcCchHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHH
Confidence 34566666666654 56642 22333332 34455555544444555543221 1112 1233444555566
Q ss_pred hhcCChHHHHHHHHHHHHHHhhc--ccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhch
Q 002697 102 LGAADRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (891)
Q Consensus 102 L~~~~~~vr~~~a~~l~~i~~~~--~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (891)
|.|..+.+|..+-+++..|+... .++.-.++.......+.+.+..+|+.|+..++.+.-.-+
T Consensus 355 l~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 355 LSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred hhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 77899999999999999999763 566778899999999999999999999999998876544
No 337
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=69.88 E-value=2.5e+02 Score=33.70 Aligned_cols=91 Identities=9% Similarity=0.072 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcccchh---------hHHhHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhChhhhhHhHH-HHH
Q 002697 196 LRKLSLGSVNQFIMLMPSA---------LFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLF 264 (891)
Q Consensus 196 vr~~al~~l~~~~~~~~~~---------~~~~~~~~l~~l~~~~-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~l~ 264 (891)
-...++.++.+++...|+- +..++ +.++..+ ...++.+.+.+++++..+....+ .+..... ..+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F----~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL 1815 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNF----PLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCNVL 1815 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhccc----HHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhhHH
Confidence 4467888888888877631 22222 3333333 23456788888888776654432 2221111 122
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 002697 265 EYMLQVNKDTDDDVALEACEFWHSYFEA 292 (891)
Q Consensus 265 ~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (891)
..+++ +-++-+..|..+++.+.++.+.
T Consensus 1816 ~~LL~-lLHS~PS~R~~vL~vLYAL~S~ 1842 (2235)
T KOG1789|consen 1816 TTLLT-LLHSQPSMRARVLDVLYALSSN 1842 (2235)
T ss_pred HHHHH-HHhcChHHHHHHHHHHHHHhcC
Confidence 22333 3356778899999999999876
No 338
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.57 E-value=2.6e+02 Score=33.84 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=82.5
Q ss_pred ccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHH
Q 002697 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD 220 (891)
Q Consensus 141 ~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 220 (891)
++-.+.+|..++.-|+..+..++..+-+ ...+..+-=.|.|.+..||..++++|..+.+. +.+...+.
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~----------dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~--~~~~~~L~ 364 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLS----------DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK--DEDKDKLE 364 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhc----------chHHHHhcceeecCccHHHHHHHHHHHHHHhc--cccchHHH
Confidence 4557899999999999999988887644 23344444457889999999999999998866 22223333
Q ss_pred ----HHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 002697 221 ----QYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (891)
Q Consensus 221 ----~~l~~l~~~~-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 288 (891)
.|=..+..++ .+.+..||...+..+.... .+..+. +.=+..+..++-+.+..++..|.+|+..
T Consensus 365 lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~--~~g~L~---d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 365 LFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLS--SSGLLS---DKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHh--cccccC---hhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 3334555555 3445666655544443332 222222 1122334455667788888888888765
No 339
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=68.79 E-value=1.6e+02 Score=31.02 Aligned_cols=192 Identities=15% Similarity=0.077 Sum_probs=102.2
Q ss_pred HHHHHHhHhhhhh-cCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccC
Q 002697 91 QQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (891)
Q Consensus 91 ~~~i~~~ll~~L~-~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~ 169 (891)
-..+-+.+...+. +.+.........+++.-........=+.++..+...+.+..+.+|+.-+..++.++.... ...
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~---~~~ 96 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESP---NSD 96 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhcc---Cch
Confidence 3455566667665 557776776666666655544333446789999999999888899999999988876000 000
Q ss_pred CCCCCCcchhhhHHHHHHhhc----CCCHHHH----HHHHHHHHHHhcccchhhHH-hH----------HHH--HHHHHH
Q 002697 170 VPGLAECPINIFLPRLLQFFQ----SPHTSLR----KLSLGSVNQFIMLMPSALFV-SM----------DQY--LQGLFL 228 (891)
Q Consensus 170 ~~~~~~~~~~~l~~~l~~~l~----~~~~~vr----~~al~~l~~~~~~~~~~~~~-~~----------~~~--l~~l~~ 228 (891)
. ......++|.+.+.++ ++.+... ..|.-.+. ......+.... .. +.+ -+.+++
T Consensus 97 ~----~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvys 171 (339)
T PF12074_consen 97 S----LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYS 171 (339)
T ss_pred H----HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHh
Confidence 0 1234556666666663 3432221 11211111 10000000000 00 000 012222
Q ss_pred hhCCCCHHHHHHHHHHHHHHHhhChhhhhHhH-HHHHHHHHhhcCCC--CHHHHHHHHHHHHHhhcc
Q 002697 229 LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDT--DDDVALEACEFWHSYFEA 292 (891)
Q Consensus 229 ~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~--~~~v~~~a~~~l~~l~~~ 292 (891)
-+ .+++.....+.++..+....++...... ...-..++..+-+. ...+|..|.+.+..+...
T Consensus 172 kl--~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 172 KL--ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS 236 (339)
T ss_pred cc--CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 21 2344556666777666655544333222 33444444454454 778999999999887655
No 340
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=68.34 E-value=54 Score=27.86 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=55.4
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHh----h--cCCCHHHHHH
Q 002697 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF----F--QSPHTSLRKL 199 (891)
Q Consensus 126 ~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----l--~~~~~~vr~~ 199 (891)
+....+.+..|...+.+.++.+..-++.+|..+++.+++.+..++.. ..++..++++ . .+.+..||..
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~------~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVAS------NDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHH------hHHHHHHHHhhccccccCCCChHHHHH
Confidence 56678899999999999999999999999999999998765433211 2233333332 1 1247789999
Q ss_pred HHHHHHHHh
Q 002697 200 SLGSVNQFI 208 (891)
Q Consensus 200 al~~l~~~~ 208 (891)
+...+..+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 988887654
No 341
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=67.99 E-value=1.7e+02 Score=30.91 Aligned_cols=92 Identities=11% Similarity=0.072 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHH
Q 002697 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMM 527 (891)
Q Consensus 448 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~ 527 (891)
.+......+|..+..+-... ....-+.++..+..++.+. ....|..||.-.+-..+..+..+++.++.++.+
T Consensus 212 D~~~~~~~~Ls~LisYh~~~-----~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~ 283 (356)
T PF03542_consen 212 DLQVCVFPVLSALISYHSHF-----SKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSK 283 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 55666677777777655432 2334567888888888763 345577777777777788889999999888877
Q ss_pred HHcccchhHHHHHHHHHHHHHH
Q 002697 528 AFGKYQRRNLRIVYDAIGTLAD 549 (891)
Q Consensus 528 ~l~~~~~~~~~~~~~al~~l~~ 549 (891)
........ ..++|-+..+++
T Consensus 284 i~tt~~~A--i~ILEFLs~L~~ 303 (356)
T PF03542_consen 284 ISTTPNMA--IHILEFLSSLSR 303 (356)
T ss_pred hccchhhH--HHHHHHHHHHhh
Confidence 66543221 134555555543
No 342
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=67.83 E-value=1.8e+02 Score=34.07 Aligned_cols=84 Identities=14% Similarity=0.246 Sum_probs=57.1
Q ss_pred ccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhccc--chhhHHh
Q 002697 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM--PSALFVS 218 (891)
Q Consensus 141 ~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~--~~~~~~~ 218 (891)
..........++.++..++..|.+.+. .....++..+..+|.+..++++..+..++..|+... .+.+.-.
T Consensus 66 ~~~r~~~v~Iamea~~kLL~~C~eq~n--------~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~ 137 (819)
T KOG1877|consen 66 RRERFGSVKIAMEAYDKLLQACKEQIN--------LFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRN 137 (819)
T ss_pred HhccCcchhhHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhh
Confidence 333444556788888888887776541 234667777888888889999999999999998542 2233334
Q ss_pred HHHHHHHHHHhhCC
Q 002697 219 MDQYLQGLFLLSND 232 (891)
Q Consensus 219 ~~~~l~~l~~~~~~ 232 (891)
.+.|+..+.++..+
T Consensus 138 yd~Fi~kf~~l~he 151 (819)
T KOG1877|consen 138 YDFFISKFSSLCHE 151 (819)
T ss_pred hHHHHHHHHHHhhc
Confidence 56667777776643
No 343
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=67.26 E-value=7.3 Score=22.90 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhHH
Q 002697 449 IRSISCWTLSRFSK 462 (891)
Q Consensus 449 vr~~a~~~l~~~~~ 462 (891)
||.+|.++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999999875
No 344
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.24 E-value=3.2e+02 Score=33.98 Aligned_cols=262 Identities=16% Similarity=0.143 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC---CCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHH
Q 002697 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD---DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 482 (891)
-.+|...+.++-.+.+.+++.+-.-...+++.+-.... ..+..+.+.+..++.-++..+-+- .....+..++.
T Consensus 856 ~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqS----Lp~sci~~lid 931 (1610)
T KOG1848|consen 856 VEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQS----LPTSCILDLID 931 (1610)
T ss_pred ceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhc----CChHHHHHHHH
Confidence 66777777788888877776554334444444332222 223444444555555555443221 12333444454
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhhh
Q 002697 483 GLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYL 561 (891)
Q Consensus 483 ~l~~~l~-d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~ 561 (891)
.+...-. ..+..+--.|...+..+.+... . +.....+.. ..+..+..+-..++.+. ...
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsDfl~--------~------km~S~sed~---~~~~~~e~~~ss~~~~~---~l~ 991 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLK--------N------KMFSTSEDS---CAYNSVEDLYSSMKSKE---ILP 991 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHHHH--------h------hhhccchhh---hhhcchhhhcccccchh---hhh
Confidence 4443322 1233444444444444333221 1 011111111 11111111111222221 122
Q ss_pred hhhhHHHHHHHHcCCCCC-cch-HhHHHHHHHHHHHhcccccc--chHHHHHHHHHHHHHHH-HHhhcCcccCCCCchhH
Q 002697 562 DILMPPLIAKWQQLPNSD-KDL-FPLLECFTSIAQALGAGFTQ--FAQPVFQRCINIIQTQQ-LAKVDSVAAGAQYDKEF 636 (891)
Q Consensus 562 ~~l~~~l~~~l~~~~~~~-~~~-~~~~~~l~~i~~~~~~~~~~--~~~~i~~~l~~~l~~~~-~~~~~~~~~~~e~d~~~ 636 (891)
+.+.=.++..+.+..+++ .++ ..+..++=.+..+.|..+.+ +..-+.+.++..|.... +... +..+.+..++.
T Consensus 992 e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~--ewngkeiqkqw 1069 (1610)
T KOG1848|consen 992 EVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVS--EWNGKEIQKQW 1069 (1610)
T ss_pred hHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchh--hhcchhHhhhh
Confidence 223223444444443233 333 46777777788888887777 44444555555555221 1100 00011111222
Q ss_pred HHHHhhhHHHHHHHHhhhHHhhhcc-------chHHHHHHHHhcCCChHHHHHHHHHHhHHHHh
Q 002697 637 VVCCLDLLSGLAEGLGSGIESLVAQ-------SNLRDMLLQCCMDDASDVRQSAFALLGDLARV 693 (891)
Q Consensus 637 ~~~~~~~l~~l~~~~~~~~~~~~~~-------~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 693 (891)
-+...-.++++++.+.+.|..+..- ..++.++.....+.++++.-+|+..+.++...
T Consensus 1070 tet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1070 TETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 3345556888888888877665432 34777888888889999999999888876553
No 345
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=67.00 E-value=68 Score=33.26 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHH
Q 002697 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 485 (891)
|......|.-++.=.+ .-...+..|.+.+++.+|.|.-.|+..++.++..|...+.-+.....|. ..+.
T Consensus 26 W~~IlDvCD~v~~~~~--------~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~---~el~ 94 (462)
T KOG2199|consen 26 WSLILDVCDKVGSDPD--------GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFT---TELR 94 (462)
T ss_pred HHHHHHHHHhhcCCCc--------ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHH---HHHH
Confidence 8876555544433222 2234577788899999999999999999999888865422122233333 3333
Q ss_pred HHhc-CCCHHHHHHHHHHHHHHHHHhcc
Q 002697 486 KRIL-DTNKRVQEAACSAFATLEEEAAE 512 (891)
Q Consensus 486 ~~l~-d~~~~v~~~a~~al~~l~~~~~~ 512 (891)
..+. ...+.|++.....+....+.++.
T Consensus 95 al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 95 ALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 4444 44678888877777788877643
No 346
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=66.63 E-value=13 Score=28.37 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhcchhhhhhhHH--HHHHHHhhhcC-CCChHHHHHHHHHHHhhHHHH
Q 002697 408 DREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFI 464 (891)
Q Consensus 408 ~r~aa~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~ 464 (891)
..++|++++|.++..... .++++ .+++.+++... ++...+|..|.++++-++...
T Consensus 3 ~lKaaLWaighIgss~~G--~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG--IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHH--HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 468999999999874321 12333 47777777664 688899999999999998754
No 347
>PF14961 BROMI: Broad-minded protein
Probab=66.25 E-value=71 Score=38.61 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=54.8
Q ss_pred HhHhhhhh-cCChHHHHHHHHHHHHHHhhc--ccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcc
Q 002697 96 SELLPCLG-AADRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (891)
Q Consensus 96 ~~ll~~L~-~~~~~vr~~~a~~l~~i~~~~--~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~ 166 (891)
+.+++-|. +....||..+.+.+..+--.+ ..+.|+.|...|...+.++++...+.+++...+.+...+..+
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 44444454 457789999888777654433 568999999999999999999999999999988887665443
No 348
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.11 E-value=3.6e+02 Score=34.18 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=89.5
Q ss_pred cCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhc-cccCCCCCCCcchhhhH
Q 002697 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV-LDSDVPGLAECPINIFL 182 (891)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~-~~~~~~~~~~~~~~~l~ 182 (891)
+.+..||..+.+|++.- -...|..++..+.....+.+....+.+...+..+....... +..+. ..+.+.+
T Consensus 1048 s~s~~Irelv~rC~~~n----ikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~-----~sf~d~v 1118 (1514)
T KOG0929|consen 1048 SSSAEIRELVVRCISSN----IKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEM-----DSFKDCV 1118 (1514)
T ss_pred cCcchhHHHHHhhhhhh----hhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhh-----HHHHHHH
Confidence 34677888888888822 24679999999988888888888888888888666654432 11110 1223334
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHhcccchh-----hH--------HhHHHHHHHHHH---hhCCCCHHHHHHHHHHH
Q 002697 183 PRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSA-----LF--------VSMDQYLQGLFL---LSNDPSAEVRKLVCAAF 245 (891)
Q Consensus 183 ~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~-----~~--------~~~~~~l~~l~~---~~~~~~~~v~~~~~~~l 245 (891)
+.+..+... ..+..-..+++.+..++....+. +. .....+++.++. ...+...++|..+++.+
T Consensus 1119 ~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vl 1198 (1514)
T KOG0929|consen 1119 KCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVL 1198 (1514)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHH
Confidence 444444432 12222333333333322211111 11 111123333333 23356788999999999
Q ss_pred HHHHhhChhhhhHh-HHHHHHHHHhh
Q 002697 246 NLLIEVRPSFLEPH-LRNLFEYMLQV 270 (891)
Q Consensus 246 ~~l~~~~~~~~~~~-l~~l~~~~~~~ 270 (891)
-.+...+++.|.++ ...+...+...
T Consensus 1199 F~il~~~g~~F~~~~We~v~~~~fpI 1224 (1514)
T KOG0929|consen 1199 FDILKEHGDDFSKEFWEDVFRILFPI 1224 (1514)
T ss_pred HHHHHhhhhhccHHHHHHHHHheeec
Confidence 99888888877654 45555544333
No 349
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=64.23 E-value=76 Score=26.92 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=50.9
Q ss_pred chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHH--HHHHHhh----hc--CCCChHHHHHHHHH
Q 002697 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIP----LL--DDKFPLIRSISCWT 456 (891)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~--i~~~l~~----~l--~d~~~~vr~~a~~~ 456 (891)
.....++..+.+.+.+.+ |++..-|+.++-.+..+|++.+...+.. .+..++. .. .+.+..||..+..+
T Consensus 33 ~~~~~~~~~l~kRl~~~~---~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l 109 (115)
T cd00197 33 VGPKEAVDAIKKRINNKN---PHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIEL 109 (115)
T ss_pred ccHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHH
Confidence 445678888889998887 9999999999999999998766443322 1112221 11 24577899888777
Q ss_pred HHhh
Q 002697 457 LSRF 460 (891)
Q Consensus 457 l~~~ 460 (891)
+...
T Consensus 110 ~~~w 113 (115)
T cd00197 110 VQLW 113 (115)
T ss_pred HHHH
Confidence 6543
No 350
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=63.81 E-value=1.3e+02 Score=28.39 Aligned_cols=75 Identities=20% Similarity=0.158 Sum_probs=55.6
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccch
Q 002697 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA 515 (891)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~ 515 (891)
+.+..-..+++..+|.+++.++..+... ......++..+-..+.|.+..||.+..++|..+....++.+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~ 177 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK----------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVI 177 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 6677778899999999997777554432 234567777777777778889999999999998887555555
Q ss_pred HhHHH
Q 002697 516 PRLEI 520 (891)
Q Consensus 516 ~~l~~ 520 (891)
.|+..
T Consensus 178 ~~l~~ 182 (197)
T cd06561 178 AFLEK 182 (197)
T ss_pred HHHHH
Confidence 55443
No 351
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=63.50 E-value=90 Score=32.44 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=56.5
Q ss_pred hhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHH--HHHHHHhhhcC-CCChHHHHHHHHHHHhhHH
Q 002697 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLD-DKFPLIRSISCWTLSRFSK 462 (891)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~-d~~~~vr~~a~~~l~~~~~ 462 (891)
.-...+..+.+.+++.+ +.+..-|+..+++++.+|++.+...+. +....+...+. ..++.|+......+.+.++
T Consensus 42 ~~kd~lk~i~KRln~~d---phV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 42 GGKDCLKAIMKRLNHKD---PHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred ccHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 34467788888999998 999999999999999999976643221 12333444444 5788898888888877777
Q ss_pred HHh
Q 002697 463 FIV 465 (891)
Q Consensus 463 ~~~ 465 (891)
.+.
T Consensus 119 e~K 121 (462)
T KOG2199|consen 119 EFK 121 (462)
T ss_pred Hhc
Confidence 654
No 352
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=62.55 E-value=1.3e+02 Score=29.69 Aligned_cols=71 Identities=10% Similarity=0.169 Sum_probs=48.8
Q ss_pred hHHHHHHHHhcCC-ChHHHHHHHHHHhHHHHhchHhhHHhH--HHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHH
Q 002697 663 NLRDMLLQCCMDD-ASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (891)
Q Consensus 663 ~l~~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~ 737 (891)
.+.|++....+.. -..+|-++++++|.+++.-...+..|+ .+++|.+++.+... ++-.|..|.+-+..|..
T Consensus 95 yLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G----selSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 95 YLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG----SELSKTVATFILQKILL 168 (262)
T ss_dssp GGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-----HHHHHHHHHHHHHHHH
T ss_pred hehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc----cHHHHHHHHHHHHHHHc
Confidence 4777776555443 356889999999999997777777776 37999999988776 55667777777777653
No 353
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=60.66 E-value=4.8e+02 Score=33.67 Aligned_cols=122 Identities=21% Similarity=0.238 Sum_probs=83.9
Q ss_pred cchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 002697 422 GCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACS 501 (891)
Q Consensus 422 ~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~ 501 (891)
+....+..|++.++...-.++.++++.|+.-+......+...+. .-+-.+++..++..+.+.+..-...|..
T Consensus 424 ~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd--------s~~qqeVv~~Lvthi~sg~~~ev~~aL~ 495 (1426)
T PF14631_consen 424 GHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD--------SYCQQEVVGALVTHIGSGNSQEVDAALD 495 (1426)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS---------HHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc--------chhHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33445678888999988888999999999988877766655442 1123568888888776555544467888
Q ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhc
Q 002697 502 AFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (891)
Q Consensus 502 al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~ 552 (891)
.|..++...++.+.||.. ++..++..+.+......+.+++.++.++-..+
T Consensus 496 vL~~L~~~~~~~l~~fa~-~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~ 545 (1426)
T PF14631_consen 496 VLCELAEKNPSELQPFAT-FLKGILDYLDNLSLQQIRKLFDILCTLAFSDS 545 (1426)
T ss_dssp HHHHHHHH-HHHHHHTHH-HHHGGGGGGGG--HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCc
Confidence 888888877777777743 44555666666666777778888888876543
No 354
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=60.31 E-value=1.5e+02 Score=32.95 Aligned_cols=99 Identities=13% Similarity=0.027 Sum_probs=64.3
Q ss_pred cCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccch--hhHHhH
Q 002697 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS--ALFVSM 219 (891)
Q Consensus 142 ~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~--~~~~~~ 219 (891)
+-++..|-.++..|+..+...++.+..- ..+...--.|.|.+..||....+++..+....|. .+...+
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP~yf~k~----------~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVPDYFRKI----------LGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcchHHHHhh----------hcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3456677778888877777666544220 1122222346678899999999999999877663 344455
Q ss_pred HHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhh
Q 002697 220 DQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEV 251 (891)
Q Consensus 220 ~~~l~~l~~~~-~~~~~~v~~~~~~~l~~l~~~ 251 (891)
+.|...++..+ .|.+. ||..+.+.+..+...
T Consensus 356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 56666666654 34455 898888888776543
No 355
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.31 E-value=66 Score=35.03 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHccc--chhHHHHHHHHHHHHHHHhcc
Q 002697 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVGF 553 (891)
Q Consensus 478 ~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~il~~l~~~l~~~--~~~~~~~~~~al~~l~~~~~~ 553 (891)
..++..+.+.+...++.|+..|...|..++++|+..|.-.+ ..+++.+++...+. ...++..++..|.....+.+.
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 48888999999988889999999999999999998775433 45777777777654 456777889999988888776
No 356
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=58.54 E-value=20 Score=24.47 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=26.1
Q ss_pred hhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhc
Q 002697 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (891)
Q Consensus 89 ~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~ 124 (891)
...+++|+.+++.|..+++..|..+..+++++.+..
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 356789999999999888888888888888887653
No 357
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=58.51 E-value=1.4e+02 Score=26.99 Aligned_cols=98 Identities=9% Similarity=0.120 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhChhhhhHhHHH-HHHHHHhhc
Q 002697 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND--PSAEVRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVN 271 (891)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~-l~~~~~~~~ 271 (891)
+....++.++..++++.--.-...-+.|+..+....+. .+..+...++..|-.++...+......-++ -++.++..+
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 55667778888777652101111123445555555443 256788888888888887766543322121 244555666
Q ss_pred CCCCHHHHHHHHHHHHHhhcc
Q 002697 272 KDTDDDVALEACEFWHSYFEA 292 (891)
Q Consensus 272 ~~~~~~v~~~a~~~l~~l~~~ 292 (891)
+..+.+++..|+-.+.++...
T Consensus 112 q~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhc
Confidence 778889999999888886544
No 358
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=57.55 E-value=2.1e+02 Score=28.65 Aligned_cols=60 Identities=10% Similarity=0.048 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccch
Q 002697 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR 534 (891)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~ 534 (891)
+++-.+++..++..+..+..-+|..++..|..++....-. .|+-.+++..+.+.++..-.
T Consensus 183 P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~~ 242 (262)
T PF14225_consen 183 PDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDLW 242 (262)
T ss_pred chhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCccH
Confidence 4455677778888888777889999999999988876322 44777788888888876543
No 359
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=57.39 E-value=3.8e+02 Score=31.52 Aligned_cols=134 Identities=12% Similarity=0.156 Sum_probs=77.7
Q ss_pred hhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHH----HhcCCCHHHHHHHHHH
Q 002697 427 LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK----RILDTNKRVQEAACSA 502 (891)
Q Consensus 427 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~l~d~~~~v~~~a~~a 502 (891)
+++....++..+++...+..|.=|.. ++++.+... .+.-++.|=..|.+ -+......-..-|+.+
T Consensus 11 lR~RyKkLV~~iFPr~~e~gpn~s~m-----~kL~~YAas------np~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea 79 (819)
T KOG1877|consen 11 LRPRYKKLVDNIFPRSPEDGPNKSKM-----EKLTFYAAS------NPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEA 79 (819)
T ss_pred HHHHHHHHHHHhCCCCCCCCcccccH-----HHHHHHHhh------ChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHH
Confidence 44455666777777666655544433 233333221 12222333333332 2322222222347788
Q ss_pred HHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCchhh---hhhhhHHHHHHHHc
Q 002697 503 FATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVY---LDILMPPLIAKWQQ 574 (891)
Q Consensus 503 l~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~---~~~l~~~l~~~l~~ 574 (891)
...++.+|.+.+..|...++..+.++|.+..+..+....+++..++...++. |+| ++.+++.+.+...+
T Consensus 80 ~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~---~sy~~~yd~Fi~kf~~l~he 151 (819)
T KOG1877|consen 80 YDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDG---PSYHRNYDFFISKFSSLCHE 151 (819)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccC---chhhhhhHHHHHHHHHHhhc
Confidence 8999999999998889999999999998876555657788888888765443 223 34455555544444
No 360
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.85 E-value=59 Score=35.38 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=74.5
Q ss_pred hhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcch
Q 002697 99 LPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI 178 (891)
Q Consensus 99 l~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~ 178 (891)
-..|.++|+.+--.+|..|- .+ .+.-++.+-.|.+.+++.++.+...|+.+|..+++.|++.|..++..
T Consensus 11 ~~~l~~pDWa~NleIcD~IN----~~-~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~------ 79 (470)
T KOG1087|consen 11 SESLAEPDWALNLEICDLIN----ST-EGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVAS------ 79 (470)
T ss_pred cccccCccHHHHHHHHHHHh----cC-ccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHH------
Confidence 34566777776555443332 21 22335899999999999888999999999999999999977544322
Q ss_pred hhhHHHHHHhhcC--CCHHHHHHHHHHHHHHhcccc
Q 002697 179 NIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMP 212 (891)
Q Consensus 179 ~~l~~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~ 212 (891)
..+++..+..... .+..||..++..|..|-..++
T Consensus 80 k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 80 KEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred HHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 5677777776654 367899999999999876654
No 361
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=55.45 E-value=18 Score=21.72 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHh
Q 002697 406 WKDREAAVLALGAIA 420 (891)
Q Consensus 406 ~~~r~aa~~~l~~l~ 420 (891)
|.+|..++.+||.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 678999999999884
No 362
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=54.34 E-value=2.3e+02 Score=28.01 Aligned_cols=126 Identities=14% Similarity=0.182 Sum_probs=79.7
Q ss_pred cCCCChHHHHHHHHHHHhhHHHHhhhhC-CCc---chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--c----
Q 002697 442 LDDKFPLIRSISCWTLSRFSKFIVQDIG-HQN---GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--A---- 511 (891)
Q Consensus 442 l~d~~~~vr~~a~~~l~~~~~~~~~~~~-~~~---~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~---- 511 (891)
++|+++.|.+.++.+.+.+...+-.++. ... .-..+..+=..++..+.+.++.||..|.+.+..++-.. +
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 6788898988888888877665443321 111 12234455556667777788999999999999887542 0
Q ss_pred ------------------------ccchHhHHHHHHHHHHHHcccc--hhHHHHHHHHHHHHHHHhcccCCchhhhhhhh
Q 002697 512 ------------------------EELAPRLEIILQHLMMAFGKYQ--RRNLRIVYDAIGTLADAVGFELNQPVYLDILM 565 (891)
Q Consensus 512 ------------------------~~~~~~l~~il~~l~~~l~~~~--~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~ 565 (891)
..+..--..++..|+..+.... ......++.+++.+++. .|.|...++
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~------RP~~~~~Il 155 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ------RPQFMSRIL 155 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH------SGGGHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH------hhHHHHHHH
Confidence 0011123357888888887665 33444667777777765 357888888
Q ss_pred HHHHHHHH
Q 002697 566 PPLIAKWQ 573 (891)
Q Consensus 566 ~~l~~~l~ 573 (891)
+.+...-.
T Consensus 156 ~~ll~~~~ 163 (239)
T PF11935_consen 156 PALLSFNP 163 (239)
T ss_dssp HHHHHHHH
T ss_pred HHHHhcCc
Confidence 87765433
No 363
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=53.83 E-value=4.5e+02 Score=31.27 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002697 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (891)
Q Consensus 220 ~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~ 251 (891)
+.++|++..++-+++++.|..|...+..+...
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~ 150 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRP 150 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCC
Confidence 45577788878888999999999999988654
No 364
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=53.33 E-value=2.5e+02 Score=28.11 Aligned_cols=163 Identities=15% Similarity=0.161 Sum_probs=86.7
Q ss_pred ccccHHHHHHHHHHHHHHHcC------c-----chhhhhHHHHHHhhcc-CCCcchHHHHHHHHHHHHHhhcch----hh
Q 002697 363 NVWNLRKCSAAALDVLSNVFG------D-----EILPTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCI----KG 426 (891)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~------~-----~~~~~l~~~l~~~l~~-~~~~~~~~r~aa~~~l~~l~~~~~----~~ 426 (891)
..|..-+.+..+|..++...+ . +.+..+...+...+.+ .+ .-.-+.+...+..++..+. ..
T Consensus 59 ~~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rH---rGAfe~~~~~f~~lc~~l~~~~~~~ 135 (255)
T PF10350_consen 59 CCWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRH---RGAFESVYPGFTALCRRLWSSNNPE 135 (255)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHHHhcCCCch
Confidence 368777788888888886542 1 2233333433333322 23 3334555566666665443 22
Q ss_pred hhhhHHHHHHHHhhhcCCC-C---hHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCH--------H
Q 002697 427 LYPHLSEIVAFLIPLLDDK-F---PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK--------R 494 (891)
Q Consensus 427 ~~~~l~~i~~~l~~~l~d~-~---~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~--------~ 494 (891)
+......-+..++..+.++ . ...|+.|---+.-.+-... .+......+...+..|++....+.. .
T Consensus 136 l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~a---e~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~ 212 (255)
T PF10350_consen 136 LSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSA---EPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDL 212 (255)
T ss_pred HHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhc---CCCcchhHHHHHHHHHHHHhcCCcccccccccch
Confidence 2222222344444444444 2 2456554322211111111 1112236778888888887765432 4
Q ss_pred HHHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHcc
Q 002697 495 VQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGK 531 (891)
Q Consensus 495 v~~~a~~al~~l~~~~--~~~~~~~l~~il~~l~~~l~~ 531 (891)
-|..|+..|..++... .+.+.+|+...+..-++.+..
T Consensus 213 ~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s 251 (255)
T PF10350_consen 213 PQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSS 251 (255)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 6888888888888764 677788888776555444443
No 365
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=53.23 E-value=63 Score=30.76 Aligned_cols=82 Identities=27% Similarity=0.364 Sum_probs=51.0
Q ss_pred HHHHHHHcCc-chhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHH
Q 002697 375 LDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSIS 453 (891)
Q Consensus 375 l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 453 (891)
++.++..+.. ...+.+++......++.. -|..|.+....+.-.-+. +....+++.+-..+.|.+..|+.+.
T Consensus 103 vD~la~~~V~~~~~~~li~~~~a~~~~~~--~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KAi 174 (222)
T COG4912 103 VDTLANHFVGIPLWPDLIEEWAADAEEDN--RWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKAI 174 (222)
T ss_pred HHHHHHHhhccccCHHHHHHHHhccccch--HHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHHH
Confidence 3444555433 444555555532222222 266665555555443332 2334678888889999999999999
Q ss_pred HHHHHhhHHHH
Q 002697 454 CWTLSRFSKFI 464 (891)
Q Consensus 454 ~~~l~~~~~~~ 464 (891)
.|+|.+++.+.
T Consensus 175 gWaLrq~~k~~ 185 (222)
T COG4912 175 GWALRQIGKHS 185 (222)
T ss_pred HHHHHHHHhhc
Confidence 99999999843
No 366
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=52.50 E-value=99 Score=27.46 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=26.2
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 002697 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (891)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (891)
+.+...+..+|.+++++|+..|++|+..|-
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 566677888999999999999999998874
No 367
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=52.14 E-value=49 Score=25.34 Aligned_cols=53 Identities=6% Similarity=0.192 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhHHHHhhhhCCCcchhhHH--HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Q 002697 450 RSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRIL-DTNKRVQEAACSAFATLEEE 509 (891)
Q Consensus 450 r~~a~~~l~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~~l~-d~~~~v~~~a~~al~~l~~~ 509 (891)
.++|+|++|.++..-. ...+++ .+++.+++... .+...+|-.|..+|+-+...
T Consensus 4 lKaaLWaighIgss~~-------G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL-------GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChH-------HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 5689999999987432 222332 57777777766 45678999999999987654
No 368
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=51.40 E-value=3.4e+02 Score=29.12 Aligned_cols=100 Identities=18% Similarity=0.114 Sum_probs=48.0
Q ss_pred HHHHHHhcCCCCH-HHHHHHHHHHHHHhc--CCChH----HHHHHHhhccCCCCHH-HHHHHHHHHHHhHHhhhccCChh
Q 002697 18 CRLLEQQISPSST-ADKSQIWQQLQQYSQ--FPDFN----NYLAFILARAEGKSVE-IRQAAGLLLKNNLRTAYKSMSPS 89 (891)
Q Consensus 18 ~~~l~~~~s~d~~-~~r~~a~~~L~~~~~--~p~~~----~~l~~il~~~~~~~~~-~R~~a~~~Lk~~i~~~w~~~~~~ 89 (891)
-.+|...++|+.+ .+|-+|-..|+++.. +-+.+ ...+-+++.. ...++ .|..++ .|.+.+++. ++
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~-~e~~e~aR~~~~-il~~mFKHS-----ee 255 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKE-REPVELARSVAG-ILEHMFKHS-----EE 255 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhh-cCcHHHHHHHHH-HHHHHhhhh-----HH
Confidence 3455566678776 258888888887542 33321 1122222321 33333 444444 444444331 11
Q ss_pred hHHH-----HHHhHhhhhhcCChHHHHHHHHHHHHHHhhc
Q 002697 90 NQQY-----IKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (891)
Q Consensus 90 ~~~~-----i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~ 124 (891)
.-.. ..+.++-.....++.+-+.+|-++++++-+.
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~ 295 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHG 295 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhc
Confidence 1111 1122222233455666666777888887553
No 369
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=50.21 E-value=32 Score=23.49 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=27.2
Q ss_pred hHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhc
Q 002697 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (891)
Q Consensus 90 ~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~ 124 (891)
..+++|+.+++.|...+.. |..+..+++++.+..
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 3578999999999877666 888888888887654
No 370
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=48.64 E-value=5.4e+02 Score=30.74 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHHHh
Q 002697 674 DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQ 712 (891)
Q Consensus 674 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 712 (891)
+.+..+|..+...+.+++.+|....---+-.++..+++.
T Consensus 484 ~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~r 522 (1697)
T KOG3687|consen 484 DKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMAR 522 (1697)
T ss_pred cchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhc
Confidence 456788999999999999998754333344555555555
No 371
>PHA01351 putative minor structural protein
Probab=47.87 E-value=3.5e+02 Score=30.64 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=16.3
Q ss_pred HHhchhhhhhHHHHHHHHHHHHhcCC
Q 002697 736 AVKARQEISPIVMTVVLCLVPILKHS 761 (891)
Q Consensus 736 ~~~~~~~~~~~~~~il~~l~~~l~~~ 761 (891)
++..+.+|..++..++..++..+.+.
T Consensus 128 ~~~i~n~~~q~~~~~isd~~~~~~~~ 153 (1070)
T PHA01351 128 FQNVANDFAQIISGVISDFLNFFGAN 153 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445566667777777776666654
No 372
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=47.51 E-value=7e+02 Score=31.70 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhH-HhHHHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHH
Q 002697 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ-ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (891)
Q Consensus 664 l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~ 736 (891)
.+..|+..++..+-.+...+++.|.++....+..-. -|=...++.+...+.+. +..+...++.+|-.+.
T Consensus 531 CLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK----hkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 531 CLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK----HKMIAMGSAAALRNLL 600 (2195)
T ss_pred HHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh----hhhhhhhHHHHHHHHh
Confidence 455555666666666667778888777766653221 12223444554444444 3444455555555544
No 373
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=47.26 E-value=4.4e+02 Score=29.25 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=40.1
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhH--HHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhc
Q 002697 662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (891)
Q Consensus 662 ~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~ 739 (891)
+.++.++++....+.++-+. .+..|+ ..+++.++..|+.+. ...+..+|+..|..|+..+
T Consensus 33 ~~ImDlLLklIs~d~~~~~~---------------~ilewL~~q~LI~~Li~~L~p~~---~~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 33 PAIMDLLLKLISTDKPESPT---------------GILEWLAEQNLIPRLIDLLSPSY---SSDVQSNAADFLKAIIRIS 94 (475)
T ss_pred cHHHHHHHHHHccCcccchH---------------HHHHHHHHhCHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHh
Confidence 45777777776654433333 333444 467778888887554 5678899999999887654
Q ss_pred h
Q 002697 740 R 740 (891)
Q Consensus 740 ~ 740 (891)
.
T Consensus 95 ~ 95 (475)
T PF04499_consen 95 R 95 (475)
T ss_pred h
Confidence 3
No 374
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=46.66 E-value=2.3e+02 Score=25.77 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=62.9
Q ss_pred hHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCC--CHHHHHHHHHHHHHHhcccchhhHHhHH--H
Q 002697 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVSMD--Q 221 (891)
Q Consensus 146 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~~--~ 221 (891)
....-++.++..+.+...-.+ +..-+.++.++..+.+.+ ++.+...|+..|-.++..-+. ....+. -
T Consensus 32 ~~La~~L~af~eLMeHg~vsW--------d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~-ly~~V~~ev 102 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSW--------DTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPK-LYQLVEQEV 102 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCch--------hhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHH-HHHHHhccC
Confidence 334445666666665321111 123366777888777764 578899999999888875333 222211 1
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChh
Q 002697 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (891)
Q Consensus 222 ~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~ 254 (891)
-++.+...++.++.+++..++..+..+....++
T Consensus 103 t~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 103 TLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 145666666778889999999988888766554
No 375
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=46.64 E-value=2.1e+02 Score=25.42 Aligned_cols=75 Identities=8% Similarity=0.181 Sum_probs=51.0
Q ss_pred hhhHHHHHHhhcc-CCCcchHHHHHHHHHHHHHhhcchhhhhhhHH--HHHHH-HhhhcC---CCChHHHHHHHHHHHhh
Q 002697 388 PTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAF-LIPLLD---DKFPLIRSISCWTLSRF 460 (891)
Q Consensus 388 ~~l~~~l~~~l~~-~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~--~i~~~-l~~~l~---d~~~~vr~~a~~~l~~~ 460 (891)
...+..+.+.+++ .+ +.+..-|+..+..++.+|+..+...+. ..+.. +...+. +++..|+...+..+...
T Consensus 37 k~a~ralkkRl~~~~n---~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 37 KDAVRALKKRLNGNKN---HKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAW 113 (141)
T ss_pred HHHHHHHHHHHccCCC---HHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHH
Confidence 3566777777764 45 888888899999999999876542221 12332 333333 34568999999998888
Q ss_pred HHHHh
Q 002697 461 SKFIV 465 (891)
Q Consensus 461 ~~~~~ 465 (891)
+..+.
T Consensus 114 ~~~f~ 118 (141)
T cd03565 114 ADAFR 118 (141)
T ss_pred HHHhC
Confidence 87775
No 376
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=45.27 E-value=5e+02 Score=29.38 Aligned_cols=94 Identities=14% Similarity=0.029 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhh-hhHHHHHHHHhhhcCCC
Q 002697 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIPLLDDK 445 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~d~ 445 (891)
.-......+..+....+...++.+=..+.+.+-+++ .-..+-+..+.+=+++....++- .++..+. .+++.+..+
T Consensus 244 lY~~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~---~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~-~Lik~lp~~ 319 (559)
T PF14868_consen 244 LYQHVLVHLCTFIASLSPSAFPELERFLLENVLHPH---FLCSLLAMDVWCFLARYGTAELCAHHVNLLA-HLIKSLPSS 319 (559)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCc---hHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-HHHHHcCCc
Confidence 444455556565655666666666666666666677 66677777776667765544443 3444444 444444422
Q ss_pred ChHHHHHHHHHHHhhHHHHh
Q 002697 446 FPLIRSISCWTLSRFSKFIV 465 (891)
Q Consensus 446 ~~~vr~~a~~~l~~~~~~~~ 465 (891)
.. ....-...++|+...+.
T Consensus 320 ~~-~~~~L~~LL~Rl~~~m~ 338 (559)
T PF14868_consen 320 SY-QLINLSILLRRLFFLMA 338 (559)
T ss_pred ch-hHhhHHHHHHHHHHhcC
Confidence 22 22235556777766554
No 377
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=43.80 E-value=4.1e+02 Score=27.98 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=69.3
Q ss_pred hHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhH---HhHHHH
Q 002697 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF---VSMDQY 222 (891)
Q Consensus 146 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~---~~~~~~ 222 (891)
..++.|.+.+...++.++... ..-+..=+.++.+.+..||..|++-|-.++.. +.+. +.+.++
T Consensus 39 k~k~lasq~ip~~fk~fp~la------------~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qL 104 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPSLA------------DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQL 104 (460)
T ss_pred HHHHHHHHHHHHHHhhCchhh------------hHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHHH
Confidence 344455666666666554432 23344556677888999999999998888764 1111 111111
Q ss_pred -----HHHHHHhhCCCCHHHHHHHHHHHH-HHHhhChhhhhHhHH-HHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 002697 223 -----LQGLFLLSNDPSAEVRKLVCAAFN-LLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289 (891)
Q Consensus 223 -----l~~l~~~~~~~~~~v~~~~~~~l~-~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l 289 (891)
+..|+.-....+..+|..+...+. .+....++.+...++ .+++.+-..+.|-+.+--...+.++.++
T Consensus 105 Lnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~l 178 (460)
T KOG2213|consen 105 LNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASL 178 (460)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 223333222346778887777663 344444444443332 3445555556655444333335555554
No 378
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=43.69 E-value=64 Score=35.00 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhcchhhhhhhH--HHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhH-HHHHHHHHH
Q 002697 410 EAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLK 486 (891)
Q Consensus 410 ~aa~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~ 486 (891)
-+++.+|-.++.... .++.-+ ..+.+.+++.|.+|+.+|...+...+..+.-.+.. ....++ ..++..+.+
T Consensus 407 ~a~~l~LkS~SrSV~-~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn-----L~~~fL~~~iIdvl~~ 480 (743)
T COG5369 407 VAIVLFLKSMSRSVT-FLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSN-----LGAGFLEKSIIDVLVN 480 (743)
T ss_pred HHHHHHHHHhhHHHH-HHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccc-----hHHHHHHhhHHHHHHH
Confidence 455556666655432 122222 23778889999998887776654444333221111 122222 345666666
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHH
Q 002697 487 RILDTNKRVQEAACSAFATLEEEAAE--ELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (891)
Q Consensus 487 ~l~d~~~~v~~~a~~al~~l~~~~~~--~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~ 549 (891)
.+...+...|....|.+..+.-.|.+ .+.+.-..-++.++...+++...++..++..+..+..
T Consensus 481 ~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 481 LVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred HhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 66666678899999999988877743 4555556667888888888888888888888877754
No 379
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=40.06 E-value=1.5e+02 Score=27.27 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcccCch-----HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhc
Q 002697 113 VGTIVSVVVQLGGIAGW-----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (891)
Q Consensus 113 ~a~~l~~i~~~~~~~~w-----~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~ 165 (891)
++.++..+....-++.| ..++|.+..++.+........|+..|..+++.+.+.
T Consensus 46 lvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~ 103 (164)
T PF13925_consen 46 LVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPV 103 (164)
T ss_pred HHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666633334445 679999999999999999999999999988876653
No 380
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=38.90 E-value=1.7e+02 Score=25.03 Aligned_cols=73 Identities=10% Similarity=0.025 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhh----cCCCHHHHHHHHHHHH
Q 002697 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF----QSPHTSLRKLSLGSVN 205 (891)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l----~~~~~~vr~~al~~l~ 205 (891)
++++..+.+.+....+..+-..+.++..++.......... ....+.|.+...+ ....+.+|....+.+.
T Consensus 31 ~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~-------f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~ 103 (121)
T smart00582 31 KEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSE-------FGDELGPVFQDALRDVLGAANDETKKKIRRLLN 103 (121)
T ss_pred HHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHH-------HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566666666666666677788888888887664421111 1122223322222 2334678888888888
Q ss_pred HHhc
Q 002697 206 QFIM 209 (891)
Q Consensus 206 ~~~~ 209 (891)
.+-+
T Consensus 104 iW~~ 107 (121)
T smart00582 104 IWEE 107 (121)
T ss_pred HHhc
Confidence 8876
No 381
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=38.65 E-value=1.6e+02 Score=25.03 Aligned_cols=80 Identities=24% Similarity=0.306 Sum_probs=45.3
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHhcccch---hhHHhHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHhhChhh
Q 002697 182 LPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFLLSNDPS-AEVRKLVCAAFNLLIEVRPSF 255 (891)
Q Consensus 182 ~~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~-~~v~~~~~~~l~~l~~~~~~~ 255 (891)
+..++..|.+. +++-...|++....++..-+. ++..+...++..+..+-+.-+ ++.-..-.++++.++-..|..
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~ 84 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEK 84 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHH
Confidence 44556666643 567778899999999877665 677777777888877654322 233334455666666777877
Q ss_pred hhHhHH
Q 002697 256 LEPHLR 261 (891)
Q Consensus 256 ~~~~l~ 261 (891)
..+++-
T Consensus 85 ~~~~L~ 90 (114)
T PF10193_consen 85 VAPYLT 90 (114)
T ss_dssp HHH-HH
T ss_pred HHHHHH
Confidence 666543
No 382
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.75 E-value=6e+02 Score=28.11 Aligned_cols=308 Identities=17% Similarity=0.131 Sum_probs=145.2
Q ss_pred hhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhh
Q 002697 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (891)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 467 (891)
...++.+.+++-... ...+.+|+..+|.-..+..+ ..+.++..+...+.+++...+.+|+.-+|-....
T Consensus 412 d~gl~~Ldkyly~de---~~~KaGaLLGig~s~~~v~~----E~~palalLs~yl~s~s~k~~~aaiLGlg~afsG---- 480 (881)
T COG5110 412 DKGLETLDKYLYADE---SYRKAGALLGIGLSGLRVFE----ERPPALALLSNYLQSSSSKHVIAAILGLGAAFSG---- 480 (881)
T ss_pred HhhHHHHHHHHhcCc---ccccccceeeeeeccccccc----ccchHHHHHHHhccCCchHHHHHHHhhhHHhhcC----
Confidence 346777888887665 66666776666544333222 3455677777888899998888888777754332
Q ss_pred hCCCcchhhHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHH-HHHhcccchHhHHHHHHHHHHHHcc-cchhHHHHHHHH
Q 002697 468 IGHQNGREQFEKVLMGLLKRILDTNK--RVQEAACSAFATL-EEEAAEELAPRLEIILQHLMMAFGK-YQRRNLRIVYDA 543 (891)
Q Consensus 468 ~~~~~~~~~~~~~l~~l~~~l~d~~~--~v~~~a~~al~~l-~~~~~~~~~~~l~~il~~l~~~l~~-~~~~~~~~~~~a 543 (891)
..-++++..+...+-+.+. .+.-.|..+|+.+ +..|...+. ..|++.++.--.. .+..-.+...-.
T Consensus 481 -------t~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~t---s~ilqtf~Er~~~e~~tqw~RFlaLg 550 (881)
T COG5110 481 -------TQAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLT---SLILQTFVERGKIESETQWFRFLALG 550 (881)
T ss_pred -------CcHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHH---HHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 2234555555555555554 3444444444442 333433332 2333333322110 111112222222
Q ss_pred HHHHHHHhcccCCchhhhhhhhHHHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhh
Q 002697 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKV 623 (891)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 623 (891)
++.+. .|.. +..+.+...+..+ . -.+....+.+-..+...|..=.- +++.++.+....
T Consensus 551 La~Lf--~g~~----d~~d~v~eti~aI-e------g~ls~~~eiLv~~c~Y~GTGdvl----~Iq~lLhv~~e~----- 608 (881)
T COG5110 551 LASLF--YGRK----DQVDDVEETIMAI-E------GALSKHEEILVKGCQYVGTGDVL----VIQSLLHVKDEF----- 608 (881)
T ss_pred HHHHH--cccc----chhHHHHHHHHHh-c------chhhhhHHHHHhhceecccCcHH----HHHHHHhccCCC-----
Confidence 33332 2322 2222222222211 0 11123344455555555553221 233332211110
Q ss_pred cCcccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHH
Q 002697 624 DSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS 703 (891)
Q Consensus 624 ~~~~~~~e~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 703 (891)
++|+ . .+.+....++.+++.-.-++|++...-+ +.......+...++.+|...--++|-+....|. -
T Consensus 609 ~~D~--~-k~~ea~ie~~a~Lg~AliamGedig~eM----vlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQ------m 675 (881)
T COG5110 609 TGDT--L-KNEEALIESLALLGCALIAMGEDIGSEM----VLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQ------M 675 (881)
T ss_pred Cccc--c-hhhHHHHHHHHHhhhHHhhhcchhhHHH----HHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcc------h
Confidence 0111 0 0123333345556665666776643322 333344444556677776554444444433221 1
Q ss_pred HHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHh
Q 002697 704 DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPIL 758 (891)
Q Consensus 704 ~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l 758 (891)
.++..+.+...+. +.++.-|++.++|-+..-.. ..-+.+++.++..-.
T Consensus 676 ~vfDtL~r~shd~----dl~v~~ntIfamGLiGAGT~---NaRlaqlLrQlaSYY 723 (881)
T COG5110 676 NVFDTLERSSHDG----DLNVIINTIFAMGLIGAGTL---NARLAQLLRQLASYY 723 (881)
T ss_pred HHHHHHHHhcccc----chhHHHHHHHHhhccccCcc---hHHHHHHHHHHHHHH
Confidence 3556666666555 56788899999987653221 223445555544433
No 383
>PF14961 BROMI: Broad-minded protein
Probab=37.73 E-value=6.7e+02 Score=31.05 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=75.8
Q ss_pred HHHHHHHhccCCh-hHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhccc
Q 002697 133 LQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (891)
Q Consensus 133 l~~L~~~l~~~~~-~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (891)
++.+...++.+.| .+|..|+..|....- ++.+.. ..++.+-..+...|.|+++.+...+++.........
T Consensus 163 lq~i~d~ld~~~P~evR~eAlq~Lc~~p~--SDVls~-------E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssS 233 (1296)
T PF14961_consen 163 LQLIADKLDPGQPKEVRLEALQILCSAPP--SDVLSC-------ESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSS 233 (1296)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCCh--hhcccc-------ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Confidence 4555566655555 788888888854322 222221 356777888899999999999999999999887765
Q ss_pred chhhH----HhHHHHHHHHHH-----------hhCCCCHH--HHHHHHHHHHHHHhhChh----hhhHhHHHHHHHHHhh
Q 002697 212 PSALF----VSMDQYLQGLFL-----------LSNDPSAE--VRKLVCAAFNLLIEVRPS----FLEPHLRNLFEYMLQV 270 (891)
Q Consensus 212 ~~~~~----~~~~~~l~~l~~-----------~~~~~~~~--v~~~~~~~l~~l~~~~~~----~~~~~l~~l~~~~~~~ 270 (891)
|-.+. ..+-..++.-+. .++-..+. -.-..+..+..+-...|. +-.++++++++..+..
T Consensus 234 pl~~trEiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsL 313 (1296)
T PF14961_consen 234 PLNMTREIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSL 313 (1296)
T ss_pred chhhhHHHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHH
Confidence 53332 112111221121 11111122 122345555555555454 3456788888887776
Q ss_pred cC
Q 002697 271 NK 272 (891)
Q Consensus 271 ~~ 272 (891)
+.
T Consensus 314 Ls 315 (1296)
T PF14961_consen 314 LS 315 (1296)
T ss_pred hc
Confidence 54
No 384
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=37.58 E-value=4.7e+02 Score=26.77 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHH
Q 002697 644 LSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLA 691 (891)
Q Consensus 644 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~ 691 (891)
++.++++..+...-+... ..-..++..+.+++++||=.|+.++-.++
T Consensus 381 i~~~Vr~~PE~~~vl~Ky-g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 381 IFQLVRASPEINAVLSKY-GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhCchHHHHHHHh-hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 445555544433222211 23345556667889999988887766554
No 385
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=36.64 E-value=2.9e+02 Score=24.90 Aligned_cols=82 Identities=17% Similarity=0.083 Sum_probs=52.1
Q ss_pred HHhHHhhhccCChhhHHHHHHhHhhhhhcC-----ChHHHHHHHHHHHHHHhhcccCchHHHH-----HHHHHHhccCCh
Q 002697 76 KNNLRTAYKSMSPSNQQYIKSELLPCLGAA-----DRHIRSTVGTIVSVVVQLGGIAGWLELL-----QALVTCLDSNDI 145 (891)
Q Consensus 76 k~~i~~~w~~~~~~~~~~i~~~ll~~L~~~-----~~~vr~~~a~~l~~i~~~~~~~~w~~ll-----~~L~~~l~~~~~ 145 (891)
-..+.+.|..-..+.++.+.+..++-+.+. ...+-...-.++..+.+........+++ |.|...++.+++
T Consensus 54 ~ei~~~aWk~a~~~~~~~~e~~~iq~~~~~a~~~~~~~~~~~~R~~L~~f~~~k~~~~v~~mL~rl~~PiL~r~L~~~n~ 133 (152)
T PF12422_consen 54 GEILFRAWKKASKDKLEEIEEVCIQDLMEAAIHLEYLPLHSKFREVLLSFHSQKKRKGVDEMLLRLYEPILWRALQAANA 133 (152)
T ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHHHHHhHHhcchHhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCCc
Confidence 344557788877777777777777755432 3333333344566665544223333433 778889999999
Q ss_pred hHHhHHHHHHHH
Q 002697 146 NHMEGAMDALSK 157 (891)
Q Consensus 146 ~~r~~al~~L~~ 157 (891)
.+|..|..++..
T Consensus 134 ~Vr~na~~l~~~ 145 (152)
T PF12422_consen 134 KVRSNAAALFLD 145 (152)
T ss_pred chhccHHHHHHH
Confidence 999988887754
No 386
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=35.89 E-value=4.5e+02 Score=26.14 Aligned_cols=60 Identities=5% Similarity=0.002 Sum_probs=39.7
Q ss_pred hhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcc
Q 002697 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (891)
Q Consensus 145 ~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (891)
...|-.++-+++.+++.-....-. ++ .-.+++|..++.++.++.--+..|.-.+..++..
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~----fL--l~tEiiplcLr~me~GselSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVIS----FL--LQTEIIPLCLRIMEFGSELSKTVATFILQKILLD 169 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHH----HH--HCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHS
T ss_pred chhhHhHHHHHHHHHcCCcHHHHH----HH--HhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence 467888999999988843322110 00 1157889999999888887788888887777643
No 387
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=35.37 E-value=4.1e+02 Score=25.51 Aligned_cols=159 Identities=11% Similarity=0.026 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhcC-CChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhc-CChHH
Q 002697 32 DKSQIWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA-ADRHI 109 (891)
Q Consensus 32 ~r~~a~~~L~~~~~~-p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~-~~~~v 109 (891)
.|+-|...+...... .+....+++-|-+ +..-+.|..|..+|..... ..+++..+.+.. .+.+ .+..+
T Consensus 28 ~R~lak~~~~~~~~~~~~~~~~l~~~Lw~--~~~~E~r~~al~~l~~~~~----~~~~~~~~~~~~----~l~~~~~Wd~ 97 (208)
T cd07064 28 RRALSKPFLKESKLPDKEELWELVLELWQ--QPEREYQYVAIDLLRKYKK----FLTPEDLPLLEE----LITTKSWWDT 97 (208)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHc--chHHHHHHHHHHHHHHHHh----cCCHHHHHHHHH----HHcCCchHHH
Confidence 677777776665542 3444445554443 3446889999887765422 345554443333 2322 35555
Q ss_pred HHHHHH-HHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHh
Q 002697 110 RSTVGT-IVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (891)
Q Consensus 110 r~~~a~-~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 188 (891)
....+. +++.+... -+.+.+.+.....+++.-.|..|+.+.....+. .....++..+...
T Consensus 98 vD~~~~~i~g~~~~~-----~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~--------------~~~~~l~~~~~~~ 158 (208)
T cd07064 98 VDSLAKVVGGILLAD-----YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEK--------------TDTDLLFEIILAN 158 (208)
T ss_pred HHHHHHHHhHHHHhC-----ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc--------------cCHHHHHHHHHHh
Confidence 554433 33443322 245567788888999988888887654333321 1124455556666
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccchhhHHhH
Q 002697 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (891)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 219 (891)
+.++.--|+++.--+|..+....++.+...+
T Consensus 159 ~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 159 LGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred CCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 7777778899988899999888766555444
No 388
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=35.22 E-value=7.3e+02 Score=28.36 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhc
Q 002697 474 REQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEAA 511 (891)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~--~~v~~~a~~al~~l~~~~~ 511 (891)
..+.+..+..|++.+.+++ ..+|.+|+.=|++|+-.++
T Consensus 341 ~~~~~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaRAk 380 (563)
T PF05327_consen 341 PELADAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLARAK 380 (563)
T ss_dssp HHHHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHBT
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666665553 5568888888888877653
No 389
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=33.40 E-value=3.5e+02 Score=24.07 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHhcccCCc
Q 002697 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQ 557 (891)
Q Consensus 478 ~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~ 557 (891)
+.+...+...+.+++..||..|..|+..+-. +.+.||-+.+ .+++++. .. -+.+..+....+.....
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l~pY~d~L----~~Lldd~---~f---rdeL~~f~~~~~~~~I~ 82 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYLTPYKDNL----ENLLDDK---TF---RDELTTFNLSDESSVIE 82 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHhHHHHH----HHHcCcc---hH---HHHHHhhcccCCcCCCC
Confidence 4566666777888999999999998876533 3566665443 4455432 12 24444444333322222
Q ss_pred hhhhhhhhHHHHHHH
Q 002697 558 PVYLDILMPPLIAKW 572 (891)
Q Consensus 558 ~~~~~~l~~~l~~~l 572 (891)
++.=+.+||.++.++
T Consensus 83 ~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 83 EEHRPELMPVVLRIL 97 (141)
T ss_pred HHHHhHHHHHHHHHH
Confidence 355566676665554
No 390
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=33.24 E-value=7.5e+02 Score=27.89 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=57.1
Q ss_pred hCCCCHHHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHH
Q 002697 230 SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPV 309 (891)
Q Consensus 230 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ 309 (891)
..|-++.+|..+...+...+...|+.+.... .+.+.--.+.|....+|......+..+++.......++.+++..-.-
T Consensus 284 y~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~r 361 (740)
T COG5537 284 YIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDR 361 (740)
T ss_pred ccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3456678898899999999988888765422 23332234567788899999999888888744445666666665555
Q ss_pred HHhhcc
Q 002697 310 LLSNMI 315 (891)
Q Consensus 310 ll~~l~ 315 (891)
++..+.
T Consensus 362 ILE~~r 367 (740)
T COG5537 362 ILEFLR 367 (740)
T ss_pred HHHHHh
Confidence 554443
No 391
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=32.87 E-value=5.1e+02 Score=25.85 Aligned_cols=101 Identities=14% Similarity=0.217 Sum_probs=57.9
Q ss_pred hHHhHHHHHHHHHHhhCCC-CH---HHHHHH-HH-HHHHHHhhChhhhhHhHHHHHHHHHhhcCCCC--------HHHHH
Q 002697 215 LFVSMDQYLQGLFLLSNDP-SA---EVRKLV-CA-AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTD--------DDVAL 280 (891)
Q Consensus 215 ~~~~~~~~l~~l~~~~~~~-~~---~v~~~~-~~-~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~--------~~v~~ 280 (891)
+...-..++..++..+.+. .. -.|+.+ +- ++..+....+..-.+.++..+..+++....+. +..+.
T Consensus 136 l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qV 215 (255)
T PF10350_consen 136 LSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQV 215 (255)
T ss_pred HHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHH
Confidence 3333445666666665544 11 234332 22 23444444443322444555555555433221 34789
Q ss_pred HHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhcc
Q 002697 281 EACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (891)
Q Consensus 281 ~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~ 315 (891)
.|++++..+.........+.+|+.+.+...+..+.
T Consensus 216 HAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 216 HALNILRAIFRDSKLSEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC
Confidence 99999999988766777788888888777666554
No 392
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=31.06 E-value=5.2e+02 Score=25.40 Aligned_cols=104 Identities=9% Similarity=0.065 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHHhcccchhhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCh---------hhhhHhH
Q 002697 192 PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP---------SFLEPHL 260 (891)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~---------~~~~~~l 260 (891)
+..-.|..++..++.+++....+....+ ..+++.++......++..+..+.-.+..+.-.+. +.|. ++
T Consensus 137 ~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~-av 215 (293)
T KOG3036|consen 137 PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFS-AV 215 (293)
T ss_pred chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHH-HH
Confidence 4567999999999999988776655544 2567878777777766666666666655543221 1221 22
Q ss_pred HHHHHHHH-hhcCCCCHHHHHHHHHHHHHhhccCCch
Q 002697 261 RNLFEYML-QVNKDTDDDVALEACEFWHSYFEAQLPH 296 (891)
Q Consensus 261 ~~l~~~~~-~~~~~~~~~v~~~a~~~l~~l~~~~~~~ 296 (891)
..++..+. +..+.++...-..++.+...+.+.+...
T Consensus 216 ~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 216 ALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 33333333 3344556666667788888887764333
No 393
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=30.18 E-value=5.2e+02 Score=25.12 Aligned_cols=72 Identities=8% Similarity=-0.002 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhchhhhhhH-HHHHHHHHHHHhcCC-----hhhhhhHHHhHHHHHhhhhhhcCCccCcchhHHHHHHH
Q 002697 728 ACWAIGELAVKARQEISPI-VMTVVLCLVPILKHS-----EELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWC 799 (891)
Q Consensus 728 a~~alg~l~~~~~~~~~~~-~~~il~~l~~~l~~~-----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~ 799 (891)
++.++-.+....+-.+.+| ++.++..+..+.... .....++-...+..+..++..++..+....+.++..++
T Consensus 8 ~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~ 85 (223)
T PF10441_consen 8 ILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQ 85 (223)
T ss_pred HHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHH
Confidence 3344444444333334444 455555555554321 01134455567777888888887777655554444433
No 394
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.62 E-value=6.5e+02 Score=26.05 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=58.8
Q ss_pred hHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHH-HHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 002697 430 HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK-VLMGLLKRILDT--NKRVQEAACSAFATL 506 (891)
Q Consensus 430 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~l~d~--~~~v~~~a~~al~~l 506 (891)
-++.++........ +|.|-..++-++.-++-..++. ....++. .-...++.|+-. ...||..||+.+.++
T Consensus 329 g~~~ii~l~~~h~~--~p~Vi~~~~a~i~~l~LR~pdh-----sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNi 401 (461)
T KOG4199|consen 329 GLDKIITLALRHSD--DPLVIQEVMAIISILCLRSPDH-----SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNI 401 (461)
T ss_pred ChHHHHHHHHHcCC--ChHHHHHHHHHHHHHHhcCcch-----HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34555555555544 4677777777777666543321 2222221 223344555532 357999999999999
Q ss_pred HHHhcccchHhHHHHHHHHHHHHcccc
Q 002697 507 EEEAAEELAPRLEIILQHLMMAFGKYQ 533 (891)
Q Consensus 507 ~~~~~~~~~~~l~~il~~l~~~l~~~~ 533 (891)
+....+.-.+.+..=++.|+..-....
T Consensus 402 v~rs~~~~~~~l~~GiE~Li~~A~~~h 428 (461)
T KOG4199|consen 402 VVRSAENRTILLANGIEKLIRTAKANH 428 (461)
T ss_pred HHhhhhccchHHhccHHHHHHHHHhcC
Confidence 988777667777766776666554433
No 395
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.15 E-value=2.5e+02 Score=22.32 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=26.5
Q ss_pred CCChhhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHhc
Q 002697 8 QPQEQGFNEICRLLEQQISPSST---ADKSQIWQQLQQYSQ 45 (891)
Q Consensus 8 ~p~~~~~~~l~~~l~~~~s~d~~---~~r~~a~~~L~~~~~ 45 (891)
.-+++.+.+..++|..+. .|+. .+|+.|++....+.+
T Consensus 9 ~d~~e~i~q~~~lL~~Ii-~DttVPRNIRraA~~a~e~L~~ 48 (93)
T COG1698 9 NDSEEKINQVMQLLDEII-QDTTVPRNIRRAAEEAKEALNN 48 (93)
T ss_pred hhhHHHHHHHHHHHHHHH-ccccccHHHHHHHHHHHHHHhC
Confidence 346778888888888854 3332 389999999888764
No 396
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=28.82 E-value=1.2e+03 Score=28.74 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHh
Q 002697 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL 140 (891)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l 140 (891)
+.+..+|..|+..|-.....-- +.+...+..++++.++++.-..+|...+.+++.+.+...-+.| .++..+.+..
T Consensus 84 s~l~~~r~~aa~~Ll~~lq~~~---~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~~~kai~a~-~vL~~i~~~~ 158 (1129)
T KOG1926|consen 84 SSLRPVRLAAAFQLLADLQELR---DAEELSYVLNRLIRGLSSDRESARLGFSLILTEVLRPKAIEAT-SVLSTILQVL 158 (1129)
T ss_pred hhcHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhccccchHH-HHHHHHHHHH
Confidence 4588999999888755544321 5566778889999999988888999999999998865545566 5555555544
No 397
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.78 E-value=1.2e+03 Score=29.05 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 002697 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (891)
Q Consensus 476 ~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (891)
-+...+|.++++....+..+|+.|..++..++.+.
T Consensus 934 ~ls~F~p~l~ect~q~~~~vRemAs~vl~~L~~~~ 968 (1417)
T KOG1810|consen 934 GLSVFVPFLQECTCQSNLKVREMASLVLLALVDAV 968 (1417)
T ss_pred CchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34567788888887777899999999999888763
No 398
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=28.58 E-value=9.6e+02 Score=27.67 Aligned_cols=140 Identities=14% Similarity=0.057 Sum_probs=74.7
Q ss_pred CChhhHHH-HHHHHHH--hcCCCCHHHHHHHHHHHHHH-hc-CCChH-HHHHHHhhccCCCCHHHHHHH-HHHHHHhHHh
Q 002697 9 PQEQGFNE-ICRLLEQ--QISPSSTADKSQIWQQLQQY-SQ-FPDFN-NYLAFILARAEGKSVEIRQAA-GLLLKNNLRT 81 (891)
Q Consensus 9 p~~~~~~~-l~~~l~~--~~s~d~~~~r~~a~~~L~~~-~~-~p~~~-~~l~~il~~~~~~~~~~R~~a-~~~Lk~~i~~ 81 (891)
.+++ ++. +..+|-+ ..+|.-. +|+.|.+.|.+. .. .|.++ ..++.++ + .-.-.|... .-.+++.+..
T Consensus 379 ~~~~-lqt~L~hll~~~alFDpel~-vRr~a~Aal~E~iGR~~s~a~g~~lIslI-N---~~sv~r~s~csg~~~r~~~~ 452 (993)
T COG5234 379 AIEG-LQTNLIHLLLQTALFDPELN-VRRAATAALFEVIGRHASIADGLSLISLI-N---YVSVTRISNCSGDLCRKVAH 452 (993)
T ss_pred cchh-HHHHHHHHHHhhhhcCchhh-hhhHHHHHHHHHhccCCCcccchhhhhhc-c---ceecchhhhcchHHHHHhcC
Confidence 4444 544 4444444 4567777 999999999885 44 34433 2344433 1 111222222 2233333322
Q ss_pred hhccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhh
Q 002697 82 AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (891)
Q Consensus 82 ~w~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~ 161 (891)
.-...+-+ +-.+..|+..|.+=+..++...+-.+..+.+. +...|-+++.+...+.++ .-.+..++..+.+.
T Consensus 453 ~~k~~~Ce--dVF~diLl~Nl~H~~~~~k~~~~y~l~~liK~--~~~~p~yl~~Il~k~~sd----fi~~~~il~~~~k~ 524 (993)
T COG5234 453 FPKFRSCE--DVFQDILLTNLQHWDVKVKQLSAYSLRQLIKY--PKELPIYLPPILDKLSSD----FIFGYTILASIIKG 524 (993)
T ss_pred ccccchHH--HHHHHHHHhhhhccchhhhhhccccHHHHhcC--cccCchhhhHHhhhCchh----hhcchhhHHHHHHH
Confidence 11111111 23344477788888888999989888888553 445566666665555432 22344455555555
Q ss_pred c
Q 002697 162 I 162 (891)
Q Consensus 162 ~ 162 (891)
+
T Consensus 525 F 525 (993)
T COG5234 525 F 525 (993)
T ss_pred h
Confidence 4
No 399
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=27.96 E-value=3.8e+02 Score=22.81 Aligned_cols=62 Identities=10% Similarity=0.146 Sum_probs=39.7
Q ss_pred HhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc
Q 002697 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (891)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~ 513 (891)
.+..|......++....|++...- +...++..+.+.+....+.-+....+.+..++.++...
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~--------------~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~ 66 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHAS--------------HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRK 66 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhc
Confidence 344455566677777777775432 23456666666666555556777888888888887443
No 400
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=27.88 E-value=3.7e+02 Score=22.63 Aligned_cols=44 Identities=5% Similarity=0.029 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH
Q 002697 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL 518 (891)
Q Consensus 475 ~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l 518 (891)
.+...++..+.+.+....+.-+..+.+.+..++.+++.....++
T Consensus 33 ~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~ 76 (114)
T cd03562 33 KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFF 76 (114)
T ss_pred HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHH
Confidence 34456777777777766677788899999999998866544443
No 401
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=26.95 E-value=3.1e+02 Score=23.32 Aligned_cols=71 Identities=17% Similarity=0.086 Sum_probs=38.2
Q ss_pred hhHHHhHHHHHhhhhhhcCC---ccCcchhHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhChhhhHhhHHHH
Q 002697 766 KSLIENSAITLGRLAWVCPE---LVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFM 836 (891)
Q Consensus 766 ~~~~~~~~~~l~~l~~~~~~---~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~~ 836 (891)
..-.+.+..+.-.|++..+. .+..+...++..++..=...+.+.-...-.+++..++...|..+.+.+...
T Consensus 19 ~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~~~~~L~~~ 92 (114)
T PF10193_consen 19 YEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEKVAPYLTEE 92 (114)
T ss_dssp -S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGGHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45567788888889988776 555556666666654333211111122335778888888887777654433
No 402
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=26.40 E-value=1.3e+03 Score=28.61 Aligned_cols=122 Identities=14% Similarity=0.067 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--cCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChh
Q 002697 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYS--QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (891)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~--~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~ 89 (891)
+..+.++.+++.-..-.-. .-++..-|-+++. +.|...+. +|++ ..+..-+.++-+ ..|.+.|..+.+.
T Consensus 821 e~q~~Lldl~qkq~~~~ls-~edk~~lWekR~yc~~~p~aLPl---VL~S--ap~W~~~~l~~~---y~lL~~Wa~l~Pl 891 (1639)
T KOG0905|consen 821 ETQEKLLDLIQKQSTLTLS-TEDKDLLWEKRLYCTNEPNALPL---VLAS--APSWDWGNLMDV---YQLLHQWAPLRPL 891 (1639)
T ss_pred HHHHHHHHHHhhccccccc-hhhHHHHHHHhhhhcCCCchhHH---HHhc--CCCCchhhHHHH---HHHHHhccccCHH
Confidence 3444566666443222112 3334455666653 46777554 4444 334444443332 3466889988775
Q ss_pred hHHHHHHhHhhhhh--cCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCChhHHh
Q 002697 90 NQQYIKSELLPCLG--AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHME 149 (891)
Q Consensus 90 ~~~~i~~~ll~~L~--~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~ 149 (891)
.. +..|. -++.+||..+.+-|+.+...+-.+..|+|++.|.--+--.++-++.
T Consensus 892 ~A-------LelL~~kfPDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~F 946 (1639)
T KOG0905|consen 892 IA-------LELLLPKFPDQEVRAHAVQWIARLSNDELLDYLPQLVQALKFELYLKSALVQF 946 (1639)
T ss_pred HH-------HHhhcccCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 42 33343 3799999998888887665433333344444443333334554443
No 403
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=26.10 E-value=1.1e+02 Score=23.51 Aligned_cols=30 Identities=20% Similarity=0.095 Sum_probs=26.1
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHHhhc
Q 002697 133 LQALVTCLDSNDINHMEGAMDALSKICEDI 162 (891)
Q Consensus 133 l~~L~~~l~~~~~~~r~~al~~L~~l~~~~ 162 (891)
++.+..+..|..+..|..|+.+|+.|+...
T Consensus 41 i~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 41 IQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999988754
No 404
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=26.01 E-value=6e+02 Score=24.42 Aligned_cols=165 Identities=12% Similarity=0.080 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhcc
Q 002697 63 KSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS 142 (891)
Q Consensus 63 ~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~ 142 (891)
..|..|..|--.++. .+.+..+.+...+..+..++-.+.|..+...+....+..... -++.+...+..
T Consensus 24 ~~P~~R~lak~~~~~--------~~~~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~----~~~~~~~~l~~ 91 (208)
T cd07064 24 KTPERRALSKPFLKE--------SKLPDKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPE----DLPLLEELITT 91 (208)
T ss_pred ChHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHcC
Confidence 456777777544432 222222333333334555566667776655555433322122 24444444444
Q ss_pred -CChhHHhH-HHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHhHH
Q 002697 143 -NDINHMEG-AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD 220 (891)
Q Consensus 143 -~~~~~r~~-al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 220 (891)
+++..... +-.+++.+... -+...+.+.....+++.-.|..|+-+...+.... ..+
T Consensus 92 ~~~Wd~vD~~~~~i~g~~~~~----------------~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~------~~~ 149 (208)
T cd07064 92 KSWWDTVDSLAKVVGGILLAD----------------YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKT------DTD 149 (208)
T ss_pred CchHHHHHHHHHHHhHHHHhC----------------ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc------CHH
Confidence 34555443 33333333221 0334567888888999988888887655544431 123
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhHhHH
Q 002697 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (891)
Q Consensus 221 ~~l~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~ 261 (891)
.+...+...+++++.-+++++--+|-.+....++.+..++.
T Consensus 150 ~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~ 190 (208)
T cd07064 150 LLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVA 190 (208)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 33444555666776677888888888888888877666554
No 405
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=25.84 E-value=1e+03 Score=27.16 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=91.2
Q ss_pred chhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhccc-chhhHHhHHH-HHHHHHHh-hCCCC-H----HHHHHHHHHHHHH
Q 002697 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM-PSALFVSMDQ-YLQGLFLL-SNDPS-A----EVRKLVCAAFNLL 248 (891)
Q Consensus 177 ~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~-~l~~l~~~-~~~~~-~----~v~~~~~~~l~~l 248 (891)
.+..++..++.....++..+|..|+-|+..++... +..+.+.+.. ++..+-+. ....+ . -.+....+.++.=
T Consensus 279 ~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld 358 (661)
T KOG2256|consen 279 LLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLD 358 (661)
T ss_pred HHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccC
Confidence 34555556666666788899999999998776443 3333332222 12222221 11111 1 1222233333222
Q ss_pred HhhChhhhhHhHHHHHHHHHhhcCCCCHH-H-------HHHHHHHHHHhhc-cCCchhhHHhhhhhhHHHHHhhccCChh
Q 002697 249 IEVRPSFLEPHLRNLFEYMLQVNKDTDDD-V-------ALEACEFWHSYFE-AQLPHENLKEFLPRLVPVLLSNMIYADD 319 (891)
Q Consensus 249 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-v-------~~~a~~~l~~l~~-~~~~~~~~~~~l~~li~~ll~~l~~~~~ 319 (891)
.+..+.+-.-|+.++--.+..++.....+ + -..++.+|..+.. .......++|.+..++++++......+.
T Consensus 359 ~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT 438 (661)
T KOG2256|consen 359 LQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPT 438 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCc
Confidence 23333333446666665555555443222 1 2467888988766 3334445666666666665433322110
Q ss_pred hhhhhhhcccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHHHcCc--chhhhhHHHHHH
Q 002697 320 DESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EILPTLMPVIQA 396 (891)
Q Consensus 320 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~d~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~~l~~ 396 (891)
...+-.|--.+..|..|+...|. .+.+.++..+..
T Consensus 439 ------------------------------------------~qy~PLRlhcir~Li~Ls~ssg~fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 439 ------------------------------------------PQYYPLRLHCIRSLISLSRSSGTFIPLSPLLVEMLKS 475 (661)
T ss_pred ------------------------------------------ccchhHHHHHHHHHHHHHhhcCceeecHHHHHHHHHH
Confidence 01134788888999999888876 334444444433
No 406
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=25.07 E-value=3.7e+02 Score=24.07 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=39.2
Q ss_pred ccCCCCchHHHHHHHH---HHHHHhhChhhhHhhHHHHhhHhhcccccCchhHHHHHHHHHHHHHhhcChhhHHHHHhcC
Q 002697 802 LSMIRDDTEKEDAFRG---LCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSAL 878 (891)
Q Consensus 802 l~~~~~~~e~~~~~~~---l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 878 (891)
.+...|.+++..-|.. +...+...+.........+..++..|.+| .++|..|.+.+|++-|+.+...+
T Consensus 77 ~p~p~d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP---------~~LL~iyq~tlP~~Vf~~lia~~ 147 (148)
T TIGR00985 77 APDPTDPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQP---------QQLLSIYQQTLPEPIFRLMIAQL 147 (148)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCH---------HHHHHHHHhhCCHHHHHHHHhhc
Confidence 4444555555544433 22222223334445677778888777554 47888888888876677554443
No 407
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=24.96 E-value=4.8e+02 Score=22.99 Aligned_cols=57 Identities=12% Similarity=0.288 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhhChhhhhHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 002697 236 EVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (891)
Q Consensus 236 ~v~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (891)
......+..+.......|+.+..+=..+++.+.+++.+.++.++..|-+......+.
T Consensus 68 ~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~ 124 (135)
T PF13981_consen 68 KLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTHGDDEIKQKARDLYKKYLQL 124 (135)
T ss_dssp HHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC-TSCCCHHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 344455566655556788887777677888888888877888888888877766655
No 408
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=24.84 E-value=1.1e+03 Score=27.02 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=43.8
Q ss_pred chhHHHHHhhhHHHHHH-HHh--hhHHhhhccchHHHHHHHHhcC----CChHHHHHHHHHHhHHHHhchHhhHHhHHHH
Q 002697 633 DKEFVVCCLDLLSGLAE-GLG--SGIESLVAQSNLRDMLLQCCMD----DASDVRQSAFALLGDLARVCPVHLQARLSDF 705 (891)
Q Consensus 633 d~~~~~~~~~~l~~l~~-~~~--~~~~~~~~~~~l~~~l~~~~~~----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i 705 (891)
.|.++ .+++.|..++. ..| +.+.|++.+ +..++..+++- .....|-.++..|-.+++.+| .|.|..+.+
T Consensus 394 nWqfi-~cL~lW~rvisf~~~~~s~lq~LvYp--LvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg-~fIPi~~ll 469 (661)
T KOG2256|consen 394 NWQYV-HCLDLWLRVISFANGSASQLQPLVYP--LVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSG-TFIPLSPLL 469 (661)
T ss_pred HHHHH-HHHHHHHHHHHHhhccHhhhhhhhhH--HHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcC-ceeecHHHH
Confidence 34443 35666666555 333 235555544 55555555432 334577778888888888776 445666655
Q ss_pred HHHHHHhcC
Q 002697 706 LDIAAKQLN 714 (891)
Q Consensus 706 ~~~l~~~l~ 714 (891)
+..+-....
T Consensus 470 ~Eml~~~~~ 478 (661)
T KOG2256|consen 470 VEMLKSVTF 478 (661)
T ss_pred HHHHHHhhc
Confidence 555444433
No 409
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=24.73 E-value=8.6e+02 Score=25.86 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=28.2
Q ss_pred hhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhh
Q 002697 429 PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (891)
Q Consensus 429 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 467 (891)
.|+.++...+-+.+...++.......|++|.+..+++..
T Consensus 65 ~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~l 103 (373)
T PF14911_consen 65 EYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPL 103 (373)
T ss_pred HHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchh
Confidence 455556666666666667778888889999998887764
No 410
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=24.23 E-value=6.8e+02 Score=26.79 Aligned_cols=109 Identities=12% Similarity=0.178 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHhHHHHhchHhhHHhHH-HHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHHHhch--hhhhhHHHHHHH
Q 002697 676 ASDVRQSAFALLGDLARVCPVHLQARLS-DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR--QEISPIVMTVVL 752 (891)
Q Consensus 676 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~--~~~~~~~~~il~ 752 (891)
.+.+-..|+.++.+++..-|..+....+ .+.+.+++.+.......+.++-...-.++|.++.+.. +.+..+ ..+.
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~--~~l~ 199 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSS--NPLD 199 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhc--ChHH
Confidence 4567777888888888776644432211 2333333333311110034555556667777775543 224332 4566
Q ss_pred HHHHHhcCChhh----hhhHHHhHHHHHhhhhhhcCCc
Q 002697 753 CLVPILKHSEEL----NKSLIENSAITLGRLAWVCPEL 786 (891)
Q Consensus 753 ~l~~~l~~~~~~----~~~~~~~~~~~l~~l~~~~~~~ 786 (891)
.++.++.++.+. ..+...+...++-.|++.+|..
T Consensus 200 ~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~L 237 (379)
T PF06025_consen 200 KLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSL 237 (379)
T ss_pred HHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHH
Confidence 777888776532 1123333445556677776653
No 411
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=24.03 E-value=2.7e+02 Score=25.94 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhh--HHHHHHHHhhhcCC
Q 002697 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPH--LSEIVAFLIPLLDD 444 (891)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~--l~~i~~~l~~~l~d 444 (891)
.|.....-+..+...-|-..+-.++..+...-... .........++.|+-.+...-. .+... -+..+..+..++.+
T Consensus 92 Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~-~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s 169 (187)
T PF06371_consen 92 LRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKS-EEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDS 169 (187)
T ss_dssp HHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTC-TTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--T
T ss_pred hccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhc-chhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCC
Confidence 44444455555544434343333333333222211 1115667778888888876432 11111 24467889999999
Q ss_pred CChHHHHHHHHHHHhhH
Q 002697 445 KFPLIRSISCWTLSRFS 461 (891)
Q Consensus 445 ~~~~vr~~a~~~l~~~~ 461 (891)
+++.+|..++..|+.++
T Consensus 170 ~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 170 PNIKTRKLALEILAALC 186 (187)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998887664
No 412
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=23.55 E-value=7.5e+02 Score=25.60 Aligned_cols=158 Identities=14% Similarity=0.189 Sum_probs=67.6
Q ss_pred HHHHHHHhhcc-CCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHhHhhhhhcCChHHHHHHHHHHHHHHhhc----
Q 002697 50 NNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG---- 124 (891)
Q Consensus 50 ~~~l~~il~~~-~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~---- 124 (891)
+..|+.+.... ......+|.+|.-++|..+.++ ++.+..+.+.++..-.+.+. -...+.++..+...+
T Consensus 36 i~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N-----~~~q~~~l~~~i~~~~~~~~--~~~~~nl~~~Ll~~~~~~~ 108 (312)
T PF04869_consen 36 IDALLNLMLNENSVQPFDLRCAALYCFKAYFYNN-----EEGQTAFLSTLIPSYASGNS--DDPIANLLTALLDYDSDLS 108 (312)
T ss_dssp HHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT------HHHHHHHHHTTSSTT--SS----SSSS-HHHHHT------S
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHhccCCCCcc--cchhhHHHHHHHHhhcccc
Confidence 44555544322 1257899999999998887764 33444443333333222221 000011333333211
Q ss_pred --ccCchHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHhhc-----CCCHHHH
Q 002697 125 --GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-----SPHTSLR 197 (891)
Q Consensus 125 --~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~-----~~~~~vr 197 (891)
+...|=. --.+..++ .+++..|+.++++= + ... +. + ...-.+++.+...|. +.++.++
T Consensus 109 ~dpy~~wfA-a~il~hll-~dn~~~Ke~al~V~----~-~~~----~~-g---e~~vtliq~v~~lL~~~l~~~~d~ri~ 173 (312)
T PF04869_consen 109 LDPYRCWFA-AVILMHLL-RDNPEAKEQALRVT----E-GDE----SS-G---EEPVTLIQTVSELLIASLRRNSDPRIQ 173 (312)
T ss_dssp S-HHHHHHH-HHHHHHHH-TT-HHHHHHHTT------E-E------ST-T---S--EEHHHHHHHHTTT----T--HHHH
T ss_pred CCHHHHHHH-HHHHHHHH-hcCHHHHHHHHccc----C-CCC----CC-C---CCcccHHHHHHHHHHhhhhcCCchhHH
Confidence 1122311 01122222 33444455554441 0 000 00 0 111234555555443 3478888
Q ss_pred HHHHHHHHHHhcccchhhHHhHH--HHHHHHHHh
Q 002697 198 KLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLL 229 (891)
Q Consensus 198 ~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~ 229 (891)
..-+..|..|+...|......+. .-++.|...
T Consensus 174 igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~ 207 (312)
T PF04869_consen 174 IGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEF 207 (312)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHH
Confidence 99999999998877765554432 234555553
No 413
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=23.38 E-value=1.3e+03 Score=27.45 Aligned_cols=120 Identities=11% Similarity=0.004 Sum_probs=63.0
Q ss_pred HHhHhhhhhcCChHHHHHHHHHHHHHHhhc---ccCchH-----HHHHHHHHHhccC--ChhHHhHHHHHHHHHHhhchh
Q 002697 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWL-----ELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQ 164 (891)
Q Consensus 95 ~~~ll~~L~~~~~~vr~~~a~~l~~i~~~~---~~~~w~-----~ll~~L~~~l~~~--~~~~r~~al~~L~~l~~~~~~ 164 (891)
...++..|-++++..|.=+...+..+.+.. ....|. ++...+... +.. ++.....--..+..+++.+..
T Consensus 122 lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~ 200 (727)
T PF12726_consen 122 LPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDK 200 (727)
T ss_pred cchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccH
Confidence 345566677889999998888888876642 233442 233333333 221 222222222223333333222
Q ss_pred c-cccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHhcccchhhHHh
Q 002697 165 V-LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS 218 (891)
Q Consensus 165 ~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~ 218 (891)
. +....++ + +.-+ ++..++.-+.+.........++++..+++..+..|...
T Consensus 201 ~~i~~~l~~-~-~~~~-i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~ 252 (727)
T PF12726_consen 201 EQITHSLRA-L-ELDP-IYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDA 252 (727)
T ss_pred HHHHHHHhc-c-ccch-HHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcc
Confidence 1 1111100 0 0112 56666777776645566778899999998877766554
No 414
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=23.31 E-value=1.5e+03 Score=29.63 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhcccc-hhhHHhHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH-HHhhChhhhhHhHHHHHHHHHhh
Q 002697 194 TSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNL-LIEVRPSFLEPHLRNLFEYMLQV 270 (891)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~-~~~~~v~~~~~~~l~~-l~~~~~~~~~~~l~~l~~~~~~~ 270 (891)
.+-|...++=+.-++..-| +.+..+++.+.+.+...+. ++++.++.+++-++-. +....|+++.+..+-++-.+.+.
T Consensus 1501 ~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~lk~~vFL~~RVLLLR~Sp~hL~~LWPImv~ELv~v 1580 (1749)
T KOG3613|consen 1501 LEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPKLKKAVFLFFRVLLLRISPDHLTSLWPIMVYELVQV 1580 (1749)
T ss_pred HHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCCCchHHHHHHHHHHHHHHhcCHhhcccchHHHHHHHHHH
Confidence 4556666666666554444 4566788888999998887 7788999999888854 45677888777666555544443
No 415
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=22.74 E-value=9.9e+02 Score=25.84 Aligned_cols=159 Identities=15% Similarity=0.080 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhccCChhhHHHHHHh----Hhhhhhc-CChHH
Q 002697 35 QIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSE----LLPCLGA-ADRHI 109 (891)
Q Consensus 35 ~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~~i~~~----ll~~L~~-~~~~v 109 (891)
..-+.|=.+....+....|+.++.+. +....+|.-|+-+|...+.. +.++.+... ++..-.+ +....
T Consensus 167 evAq~LCD~iR~~~~lD~Llrmf~aP-n~et~vRve~~rlLEq~~~a-------eN~d~va~~~~~~Il~lAK~~e~~e~ 238 (832)
T KOG3678|consen 167 EVAQGLCDAIRLDGGLDLLLRMFQAP-NLETSVRVEAARLLEQILVA-------ENRDRVARIGLGVILNLAKEREPVEL 238 (832)
T ss_pred HHHHhhhhHhhccchHHHHHHHHhCC-chhHHHHHHHHHHHHHHHhh-------hhhhHHhhccchhhhhhhhhcCcHHH
Confidence 33334444445567777888888753 56668899999988776532 222222211 1111122 34455
Q ss_pred HHHHHHHHHHHHhhcccCchHHH-----HHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHH
Q 002697 110 RSTVGTIVSVVVQLGGIAGWLEL-----LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (891)
Q Consensus 110 r~~~a~~l~~i~~~~~~~~w~~l-----l~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 184 (891)
.+..+.++..++++.. .....| +..++-.+...+|....-+..+|+.+.-.-.......+. -+.+-..
T Consensus 239 aR~~~~il~~mFKHSe-et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmv------eKr~~EW 311 (832)
T KOG3678|consen 239 ARSVAGILEHMFKHSE-ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMV------EKRAAEW 311 (832)
T ss_pred HHHHHHHHHHHhhhhH-HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHH------Hhhhhhh
Confidence 5556678888887641 111222 233444444555655444555666554432221111000 0112223
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHh
Q 002697 185 LLQFFQSPHTSLRKLSLGSVNQFI 208 (891)
Q Consensus 185 l~~~l~~~~~~vr~~al~~l~~~~ 208 (891)
++.+..+.+.-.|..|+-+...++
T Consensus 312 LF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 312 LFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred hhhhhcchHHHHHHHHHHHHhhhh
Confidence 343444456667777766665554
No 416
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=22.34 E-value=1.2e+03 Score=26.59 Aligned_cols=264 Identities=13% Similarity=0.062 Sum_probs=128.1
Q ss_pred HhhcchhhhhhhHH-HHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhC---CCcchhhHHHHHHHHHHHhcCCCHH
Q 002697 419 IAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG---HQNGREQFEKVLMGLLKRILDTNKR 494 (891)
Q Consensus 419 l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~~l~~l~~~l~d~~~~ 494 (891)
++-+..+.+..+.. .++..+...++|. ..|..++.++.|+.-.+-.... +......++.++..++..-+. ...
T Consensus 207 LCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk-~~i 283 (552)
T PF14222_consen 207 LCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKK-GWI 283 (552)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCC-ccc
Confidence 33344566677777 6888888889988 7789999999988644331111 112234456666655532211 111
Q ss_pred HHH-HHHHHHHHHHHHhcccchHhH-HHHHHHHHHHHccc------chhHHHHHHHHHHHHHHHhcccCCchhhhhhhhH
Q 002697 495 VQE-AACSAFATLEEEAAEELAPRL-EIILQHLMMAFGKY------QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMP 566 (891)
Q Consensus 495 v~~-~a~~al~~l~~~~~~~~~~~l-~~il~~l~~~l~~~------~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~ 566 (891)
.+. .-...+..++...+..-..|. +.++-.|++.-... ..+....++.|+-.+....+.....|+..+...+
T Consensus 284 ~~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~ 363 (552)
T PF14222_consen 284 PRDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDP 363 (552)
T ss_pred CCChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCC
Confidence 122 334445555554433333333 55443333322211 1233446677777777665443331111111000
Q ss_pred HHHHHHHcCCCCCcchHhHHHHHHHHHHHhccccccchHHHHHHHHHHH---HHHHHHh----h-----cCcc-------
Q 002697 567 PLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINII---QTQQLAK----V-----DSVA------- 627 (891)
Q Consensus 567 ~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l---~~~~~~~----~-----~~~~------- 627 (891)
......... .. ....+. ...+.+.+...|.+++...+-+++ ++.-+.. . .+.+
T Consensus 364 ~~~~~~~~~---~~-~~~~l~----~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f 435 (552)
T PF14222_consen 364 SGNTLRVKY---TP-SNEYLS----NEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSF 435 (552)
T ss_pred CCccccccc---Cc-cccccc----chhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCcccccc
Confidence 000000000 00 000000 111122234445555444443332 2221110 0 0000
Q ss_pred -cCCC-CchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhch
Q 002697 628 -AGAQ-YDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP 695 (891)
Q Consensus 628 -~~~e-~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 695 (891)
...| ...+ ...++++...++++.-.+.+-++...++.+|.++.-+.++.|+++|...|..++...+
T Consensus 436 ~~~~d~~~~~--~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 436 GRNDDMVTDQ--KPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred cccccccccc--cchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC
Confidence 0000 0011 2345777777777776665554445688888888888899999999999999998764
No 417
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=22.23 E-value=3.1e+02 Score=25.58 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=38.8
Q ss_pred ChhHHhHHHHHHHHHHhhchh--ccccCCCCCCCcchhhhHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 002697 144 DINHMEGAMDALSKICEDIPQ--VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (891)
Q Consensus 144 ~~~~r~~al~~L~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (891)
+......+++||..++..-.. .+-. .+..+..+...+.++++.+|..+++.|..++
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~~---------~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVLS---------HPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHC---------SSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHHc---------CcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 345667788888887764321 1111 1567888999999999999999999998764
No 418
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=21.92 E-value=1.7e+03 Score=28.29 Aligned_cols=370 Identities=15% Similarity=0.130 Sum_probs=174.6
Q ss_pred hhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhHHHHhhhhCCCcchhhHHHHHHHHHHHhcCCCH-H----HHHHHHHHH
Q 002697 429 PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK-R----VQEAACSAF 503 (891)
Q Consensus 429 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~-~----v~~~a~~al 503 (891)
.+++.++--+...+.+....+|.++-.+++++.+.+. ..|+..+++.+-..+.-.-. . +......++
T Consensus 560 ~~L~~illkic~~l~~~s~e~rd~srktl~~i~k~Lg--------~~yl~~Vi~el~~Tl~rg~q~hvl~~tvh~ll~a~ 631 (1364)
T KOG1823|consen 560 RNLPSILLDICYLLRSRSAELRDASRKTLAKIIKILG--------PKYLYFVIKELQTTLKRGFQVHVLSYTVHYLLGAM 631 (1364)
T ss_pred hcCcHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 3688888888888899999999999999999999874 45666777766655543211 1 122223333
Q ss_pred HHHHHHh--cccchHhHHHHHHHHHHHHcccchh-------HHH-HHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHH
Q 002697 504 ATLEEEA--AEELAPRLEIILQHLMMAFGKYQRR-------NLR-IVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQ 573 (891)
Q Consensus 504 ~~l~~~~--~~~~~~~l~~il~~l~~~l~~~~~~-------~~~-~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~ 573 (891)
....... ...+.+++...++.++......+.. .+. ..+++-..+++.++.. -+..++.++.+.++
T Consensus 632 ~~v~~~g~Ld~~~~~~i~i~~e~~fg~v~~ek~~~~~~~kEakgnks~d~yeil~~ivs~~-----~v~~ll~p~k~il~ 706 (1364)
T KOG1823|consen 632 KNVLKAGSLDTCLDPIIKIFNENLFGEVGKEKDSKEYESKEAKGNKSYDSYEILARIVSFD-----EVPTLLRPLKNILK 706 (1364)
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhchhhcCCCchhHHHHHHHHhchh-----hhhHHHHHHHHHHh
Confidence 3322221 3345566666666666666433221 111 2344444444444432 22345555666665
Q ss_pred cCCCCCcchHhHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH-H-----hhcCcccCCCCc-------hhHHHHH
Q 002697 574 QLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQL-A-----KVDSVAAGAQYD-------KEFVVCC 640 (891)
Q Consensus 574 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~-----~~~~~~~~~e~d-------~~~~~~~ 640 (891)
... ..+....+=+|+..++..+...=.-....++..+.+..+...+ . +...+..+.-.. +..+...
T Consensus 707 ~~~-~lk~~rkv~ellrr~~~gl~~n~~s~~~s~l~lc~~l~s~~~~~ie~~~k~~~k~~~d~~~~p~fl~~t~~~~~~~ 785 (1364)
T KOG1823|consen 707 ETD-SLKSQRKVDELLRRLLLGLNDNKSSLSSSILTLCYQLKSENYQLIEVETKTAVKDQFDLGLRPFFLPNTPKLALFF 785 (1364)
T ss_pred ccc-chhhhhhHHHHHHHHHhHhccCchhhHHHHHHHHHHHhccccccchhhhhccccccccccCCcccccccHHHHHHH
Confidence 432 2233345666777666655443222233333333333332211 0 000000000001 1112222
Q ss_pred hhhHHHHH-HHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHhHHHHhchHhhHHhHHHHHHHHH-HhcCCCCC
Q 002697 641 LDLLSGLA-EGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAA-KQLNTPKL 718 (891)
Q Consensus 641 ~~~l~~l~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~-~~l~~~~~ 718 (891)
++++..-- +.-+......+.. +.+++..++......|...++..+-.+.+.--+....-. .++..+. +...++.
T Consensus 786 ~~ll~~k~~~~~~~~~~~~l~~--Fv~~l~d~l~~~~e~V~~~tLr~l~~l~~~~L~~~~~~s-~lF~~~~~~~~~gs~- 861 (1364)
T KOG1823|consen 786 LDLLRGKKTKSSDDSTVSQLVP--FVSILCDSLLSIREKVITSTLRNLIDLLRHQLDQIESVS-ELFKLLARKRHSGSP- 861 (1364)
T ss_pred HHHHhcccccCccHhHHHHHHh--HHHHHHHhhcchhhHHHHHHHHHHHHHHhccccHHHHHH-HHHHHHHHHhhcCCC-
Confidence 22222211 1111112223332 788888888887888888888888777764221111111 1111111 1111110
Q ss_pred cCchhHhhhHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhcCChhhhhhHHHhH-HHHHhhhhhhcCCccCcchhHHHHH
Q 002697 719 KETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENS-AITLGRLAWVCPELVSPHMEHFMQP 797 (891)
Q Consensus 719 ~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~l~~ 797 (891)
.-+........+++.-++...+... .-+..++.+...+.... ...-++.. ..++.-++...- ..|-+..+++.
T Consensus 862 ~~~~el~q~~~k~~t~lI~~~~s~~--i~e~~ls~ll~~~~sD~--~d~~rq~~~F~l~kAl~~r~i--~~~eL~~imd~ 935 (1364)
T KOG1823|consen 862 STNFELCQDSFKGFTALIAQVGSVK--IKEDVLSYLLARVESDI--SDPSRQGLAFSLLKALVSRKI--MLPELYEIMDK 935 (1364)
T ss_pred cccHHHHHHHHHHHHHHHHHhccee--eeHHHHHHHHHHhcccc--ccchhHHHHHHHHHHHHhccc--cchHHHHHHHH
Confidence 0145667788888887777666421 11223333344443332 22333332 333333332221 12335666666
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHH
Q 002697 798 WCIALSMIRDDTEKEDAFRGLCAMV 822 (891)
Q Consensus 798 ~~~~l~~~~~~~e~~~~~~~l~~l~ 822 (891)
+-+.+-.....+-+..+.+.+..-+
T Consensus 936 v~e~~v~~~~~~~r~qcre~~~~~~ 960 (1364)
T KOG1823|consen 936 VRETMVRNHSKEIRLQCREVFYSFL 960 (1364)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHH
Confidence 6666554333444555544444433
No 419
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=21.25 E-value=1.3e+03 Score=26.49 Aligned_cols=32 Identities=3% Similarity=0.048 Sum_probs=16.1
Q ss_pred hhhHHHHHHhhc-CCCHHHHHHHHHHHHHHhcc
Q 002697 179 NIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIML 210 (891)
Q Consensus 179 ~~l~~~l~~~l~-~~~~~vr~~al~~l~~~~~~ 210 (891)
..++..+++.-= .-++.++.+-++.+..++..
T Consensus 72 ~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa 104 (563)
T PF05327_consen 72 KQLVEAILSLNWLGRDEDFVEAYIQFLINLVSA 104 (563)
T ss_dssp HHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 555555554411 23556666666666666544
No 420
>PRK04964 hypothetical protein; Provisional
Probab=20.92 E-value=1.5e+02 Score=21.44 Aligned_cols=49 Identities=24% Similarity=0.164 Sum_probs=31.2
Q ss_pred HhHHHHhchHhhHHhHHHHHHHHHHhcCC----CCCcCchhHhhhHHHHHHHHHH
Q 002697 687 LGDLARVCPVHLQARLSDFLDIAAKQLNT----PKLKETVSVANNACWAIGELAV 737 (891)
Q Consensus 687 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~----~~~~~~~~v~~~a~~alg~l~~ 737 (891)
+..+....++.=..|+|+-+...++.|++ +.. ..++|+.|+++-..+..
T Consensus 8 vR~~ya~IgSGd~gYiP~Ai~ca~k~L~~IAad~~L--p~~vRe~AAfAAANLli 60 (66)
T PRK04964 8 VRKRYAEIGSGDLGYVPDALGCVLKALNEIAADEAL--PESVREKAAYAAANLLV 60 (66)
T ss_pred HHHHHHHhcCCccccCcHHHHHHHHHHHHHhccccC--CHHHHHHHHHHHHHHHh
Confidence 33333334444456777777777777654 222 45899999999887754
No 421
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=20.84 E-value=4.2e+02 Score=25.47 Aligned_cols=69 Identities=10% Similarity=0.153 Sum_probs=49.1
Q ss_pred HHHHHHHHhcC-CChHHHHHHHHHHhHHHHhchHhhHHhH--HHHHHHHHHhcCCCCCcCchhHhhhHHHHHHHHH
Q 002697 664 LRDMLLQCCMD-DASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (891)
Q Consensus 664 l~~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~ 736 (891)
+.|++...-++ +-...|-.+++.+|.++++....+..++ .+++|.+.+.++.. ++-.+..|+..++.+.
T Consensus 146 lypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g----SElSktvaifI~qkil 217 (315)
T COG5209 146 LYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG----SELSKTVAIFIFQKIL 217 (315)
T ss_pred eHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh----hHHHHHHHHHHHHHHh
Confidence 55555433222 3456788999999999999877776665 47999999888776 4556667777777664
No 422
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=20.41 E-value=5.6e+02 Score=22.05 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHc-CcchhhhhHHHHHHhhccCCCcchHHHHHHHHHHHHHhhcchhhhhhhH
Q 002697 371 SAAALDVLSNVF-GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (891)
Q Consensus 371 a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa~~~l~~l~~~~~~~~~~~l 431 (891)
....+..|+... ...-...++..+...+.+.+..+|+...-|+..+--+....++.+...+
T Consensus 20 ~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~ 81 (125)
T PF01417_consen 20 PGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDEL 81 (125)
T ss_dssp -HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 445566666665 3356678888898888333333499999999999988876665554444
No 423
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=20.26 E-value=6.8e+02 Score=23.01 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=64.0
Q ss_pred CCCCChhhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHhHHhhhc
Q 002697 6 AWQPQEQGFNEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (891)
Q Consensus 6 ~~~p~~~~~~~l~~~l~~~-~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~ 84 (891)
.-.|+++..+++..++..- ...=+.+.++---+.=..+.++|.+.+.++.-. + =.++....-+..+ -..|.
T Consensus 3 ~~~P~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~p~aL~~~L~sv--~-W~~~~e~~e~~~l-----L~~W~ 74 (166)
T cd00870 3 DLKPNSKERKELNKILKYPPTTKLTDEEKDLIWKFRFYLTNNKKALTKFLKSV--N-WSDEQEVKQALEL-----MPKWA 74 (166)
T ss_pred CCCcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHHhhCcHHHHHHhhhC--C-CCCHHHHHHHHHH-----HhcCC
Confidence 4568887777777777542 111111133333222222345777755444322 1 2233323233323 35698
Q ss_pred cCChhhHHHHHHhHhhhhhc--CChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhccCC
Q 002697 85 SMSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND 144 (891)
Q Consensus 85 ~~~~~~~~~i~~~ll~~L~~--~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~ 144 (891)
.++++. .+..|.. ++..||..+..++..+. .+..-..+++|.+.++-+.
T Consensus 75 ~i~~~~-------aLeLL~~~f~~~~VR~yAV~~L~~~s----d~eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 75 KIDIED-------ALELLSPYFTNPVVRKYAVSRLKLAS----DEELLLYLLQLVQALKYEN 125 (166)
T ss_pred CCCHHH-------HHHHcCccCCCHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHhcc
Confidence 877654 3455543 47889999877777532 3456667777777776543
Done!