Query 002697
Match_columns 891
No_of_seqs 335 out of 2981
Neff 10.9
Searched_HMMs 29240
Date Tue Mar 26 22:06:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002697.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_86-89//hhsearch_pdb/002697hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 809.5 92.3 845 5-891 3-852 (852)
2 2bpt_A Importin beta-1 subunit 1.0 1 1 527.5 76.9 755 15-842 4-832 (861)
3 1wa5_C Importin alpha RE-expor 1.0 1 1 508.8 68.5 808 13-889 3-956 (960)
4 1qgr_A Protein (importin beta 1.0 1 1 508.6 73.5 775 16-864 2-871 (876)
5 2x1g_F Cadmus; transport prote 1.0 1 1 419.5 56.5 701 13-782 5-859 (971)
6 3m1i_C Exportin-1; heat repeat 1.0 1 1 418.0 65.2 573 10-617 11-699 (1049)
7 2x19_B Importin-13; nuclear tr 1.0 1 1 416.0 66.0 755 11-837 20-908 (963)
8 1u6g_C TIP120 protein, CAND1; 1.0 1 1 382.6 55.5 516 15-573 6-620 (1230)
9 4hat_C Exportin-1; heat repeat 1.0 1 1 375.4 66.9 724 13-780 14-877 (1023)
10 3ibv_A Exportin-T; karyopherin 1.0 1 1 368.6 61.0 704 13-824 4-871 (980)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=809.50 Aligned_cols=845 Identities=46% Similarity=0.849 Sum_probs=766.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88888966499999999971199998889999999998733999077999986304788988999999999996774216
Q 002697 5 VAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (891)
Q Consensus 5 ~~~~~~~~~~~~~~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~ 84 (891)
|+|+|+++.++++.++|++++|||++ +|++|+++|++++++|+++.++..++.+..+.+..+|++|++.|||.+.++|.
T Consensus 3 ~~w~~~~~~~~~l~~~l~~~~s~d~~-~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~ 81 (852)
T 4fdd_A 3 YEWKPDEQGLQQILQLLKESQSPDTT-IQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ 81 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHTCSCHH-HHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 98899842399999999987394989-99999999999870998899999998566889867999999999998987447
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH
Q ss_conf 69965699999968555416996799999999999996126596389999999972159934773999999999831511
Q 002697 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (891)
Q Consensus 85 ~~~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (891)
.++++.+..+|+.+++++.++++.+|+.++.+++.|++.++++.||++++.+.+.+.++++.+|++++.+|+.+++..+.
T Consensus 82 ~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 82 NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp GCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999998749989999999999999998648135689999999987099989999999999999998578
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 00357999887613525999998604999999999999999985015246599499999999986079987899999999
Q 002697 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (891)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~ 244 (891)
.+..+. ....++.++|.+++.++++++.+|..|+++++.++...+..+...++.+++.++..++++++++|..++.+
T Consensus 162 ~~~~~~---~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 162 ILDSDV---LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRA 238 (852)
T ss_dssp HHHHCS---SSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHCHHH---HCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 756343---13329999999999856797899999999999998646387998899999999987179977899999999
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99989438021467699999999753179888899999989999520577423477654336999983115781335653
Q 002697 245 FNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (891)
Q Consensus 245 l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~ 324 (891)
|..+++.+++.+.+|++.+++.++..+.+.++++|..|+++|..+++.+..++.++|++..++|.++..|.++++|.+|+
T Consensus 239 L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 239 LVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999857798998899999999987069968999999999999860365798878889889999998757867679986
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 11015889897778874322345789999999873100103378889999999997719640541589999855038986
Q 002697 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE 404 (891)
Q Consensus 325 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~il~~l~~~l~~~~~~ 404 (891)
+.++++ |+++||....|++|.+|..+++.++...|+.+++.+++.+...+.+++
T Consensus 319 ~~d~~e------------------------d~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~-- 372 (852)
T 4fdd_A 319 KGDVEG------------------------GSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE-- 372 (852)
T ss_dssp HC------------------------------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSS--
T ss_pred CCCCCC------------------------CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC--
T ss_conf 698443------------------------222456401116999999999999874618789999999999855998--
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 35778999999999863213425510989999996105899847999999999865988765207874044499999999
Q 002697 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (891)
Q Consensus 405 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l 484 (891)
|+.|+++++++|.+++++.+.+.++++.+++.+++.++|+++.||.+++|++|+++++.... ....++..+++.+
T Consensus 373 -~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~~ll~~L 447 (852)
T 4fdd_A 373 -WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ----PPDTYLKPLMTEL 447 (852)
T ss_dssp -HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS----CTTTTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHH
T ss_conf -89999999999999863568899879999999998717998899999999999999886110----4789999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99962999899999999999999991245158699999999999700214589999999999999826668851146521
Q 002697 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (891)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l 564 (891)
++.+.|+++.||..|++++.++++.++..+.||++.+++.+...++..+.+....++++++.++..+|+.+..++|++.+
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l 527 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQML 527 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99985898889999999999999973676676799999999999988374799999999999999742431367899998
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCHHHHHHH
Q ss_conf 59999999729999844276999999999983300123319999999999998898----74237646898833589988
Q 002697 565 MPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQL----AKVDSVAAGAQYDKEFVVCC 640 (891)
Q Consensus 565 ~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~----~~~~~~~~~~e~d~~~~~~a 640 (891)
||.+++.|....++++.+..+++|++.++..+|..|.||++.+++.+++.+..... ...+++.. +++|.+++.++
T Consensus 528 ~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~-~~~d~~~~~~~ 606 (852)
T 4fdd_A 528 MPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY-EAPDKDFMIVA 606 (852)
T ss_dssp HHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS-CCCCTHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHH
T ss_conf 89999998733304699999999999999997486798899999999999999999998753388666-88761199999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 66679999988342875202212899999972699857999999999699876257668729999999998319999867
Q 002697 641 LDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKE 720 (891)
Q Consensus 641 l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~ 720 (891)
+++++.++..+|..+.+++..+.+++++..+++++.+.+|+.++.++++++..++..+.+|++.++|.+.+.+...
T Consensus 607 l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~---- 682 (852)
T 4fdd_A 607 LDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE---- 682 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTT----
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----
T ss_conf 9999789998747699883677189999998389984499999999999999816888987999999999876942----
Q ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 54375559999989898501124358999999999973177122142888699998655320677657546688999996
Q 002697 721 TVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCI 800 (891)
Q Consensus 721 ~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 800 (891)
...+|.+|+|++|.++.+.+.++.||+..+++.|.+++.++. .+..+++|++.++||++..+|+.+.|+++++++.||.
T Consensus 683 ~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~-~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~ 761 (852)
T 4fdd_A 683 FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN-TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCT 761 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS-CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHH
T ss_conf 068999999999999997117678789999999999857998-8720778899999999986889767558999999999
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCH
Q ss_conf 51289992677899999999996193436751999966731134457366899999999999921172459998931998
Q 002697 801 ALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEP 880 (891)
Q Consensus 801 ~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 880 (891)
.|+..+|.+|+..++++||.++..||+.+.+.+..||+++++|.++ .+++++++.+++..||+++|++.|++++++|||
T Consensus 762 ~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 840 (852)
T 4fdd_A 762 SLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP-KDDLRDMFCKILHGFKNQVGDENWRRFSDQFPL 840 (852)
T ss_dssp HHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCH
T ss_conf 8653666079999999999999869186888899999998706899-789999999999999876772019999872999
Q ss_pred HHHHHHH-HCCC
Q ss_conf 8998861-0689
Q 002697 881 PVKDKLS-KYQV 891 (891)
Q Consensus 881 ~~~~~l~-~~~~ 891 (891)
+.+++|. .|||
T Consensus 841 ~~~~~l~~~~~~ 852 (852)
T 4fdd_A 841 PLKERLAAFYGV 852 (852)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999987096
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=527.46 Aligned_cols=755 Identities=17% Similarity=0.245 Sum_probs=631.8
Q ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---------
Q ss_conf 9999999971-1999988899999999987339--990779999863047889889999999999967742---------
Q 002697 15 NEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA--------- 82 (891)
Q Consensus 15 ~~~~~~l~~~-~s~d~~~~r~~a~~~L~~~~~~--p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~--------- 82 (891)
+++.++|.++ .|||++ .|++|+++|++++++ |+++..|.+++.+ .+.+.++|++|++.|||.+.++
T Consensus 4 ~~l~~~L~~~~~s~d~~-~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~-~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~ 81 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQN-IRLTSETQLKKLSNDNFLQFAGLSSQVLID-ENTKLEGRILAALTLKNELVSKDSVKTQQFA 81 (861)
T ss_dssp HHHHHHHHHHHHCSSHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 79999999742693979-999999999999851999999999999837-8998679999999987022575748789999
Q ss_pred --HCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Q ss_conf --166-99656999999685554169967999999999999961265-96389999999972159-93477399999999
Q 002697 83 --YKS-MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN-DINHMEGAMDALSK 157 (891)
Q Consensus 83 --w~~-~~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-~~w~~ll~~L~~~l~~~-~~~~r~~al~~L~~ 157 (891)
|.. ++++.+..+|+.+++.+.+++..+|+.++.+++.|++.+++ +.||++++.|.+.+.++ ++.+|++++.+++.
T Consensus 82 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 76766299999999999999987799637999999999999984676455499999999987268978999999999999
Q ss_pred HHHHCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHCCC
Q ss_conf 98315110035799988761352599999860499--999999999999998501524659--94999999999860799
Q 002697 158 ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALF--VSMDQYLQGLFLLSNDP 233 (891)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~--~~~~~~l~~l~~~~~~~ 233 (891)
+++....... .+....+.+++.+.+.+.++ ++.||..+++++..++.+....+. ...+.+++.+...+.++
T Consensus 162 l~~~~~~~~~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 162 MCESADPQSQ-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHTSSTTSS-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHCCCHHHH-----HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9972784356-----78988999999999841579998789999999999999999987067668999999999986599
Q ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC---------------CHH
Q ss_conf 8789999999999989438021467699-999999753179888899999989999520577---------------423
Q 002697 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL---------------PHE 297 (891)
Q Consensus 234 ~~~vr~~~~~~l~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~---------------~~~ 297 (891)
++++|..++.+|..+.+.+++.+.+++. .+++.+...+.+.++++|..++++|..+++... ...
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 88999999999999999988999998899999999998737727899999999999998788643332103577325699
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 47765433699998311578133565311015889897778874322345789999999873100103378889999999
Q 002697 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (891)
Q Consensus 298 ~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~ 377 (891)
..++++..++|.++..+...++ | ++ .++|++|.++..+++.
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~~-----------------------------------d-~~---d~~~~~r~~a~~~L~~ 357 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQNE-----------------------------------D-PE---DDDWNVSMSAGACLQL 357 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC-----------------------------------C--C---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-----------------------------------C-CC---CCCCCHHHHHHHHHHH
T ss_conf 9999998899999999870665-----------------------------------3-01---2468689999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99771964054158999985503898635778999999999863213-42551098999999610589984799999999
Q 002697 378 LSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWT 456 (891)
Q Consensus 378 l~~~~~~~~~~~il~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 456 (891)
++..+|+.+++.+++.+...+.+.+ |+.|++++.++|.+++++. +.+.++++.+++.++..+.|+++.||.+++|+
T Consensus 358 l~~~~~~~~~~~l~~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~ 434 (861)
T 2bpt_A 358 FAQNCGNHILEPVLEFVEQNITADN---WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWC 434 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9987408689999999998757997---2699999999999985998788899899999999988289959999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHCCC
Q ss_conf 9865988765207874044499999999999629998999999999999999912----451586999999999997002
Q 002697 457 LSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA----EELAPRLEIILQHLMMAFGKY 532 (891)
Q Consensus 457 l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~----~~~~~~l~~i~~~l~~~l~~~ 532 (891)
+|+++.++.... ....++..+++.+++.+.|+ +.||..|++++..+++.++ ..+.||++.+++.+...+.+.
T Consensus 435 l~~l~~~~~~~~---~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 435 IGRIADSVAESI---DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp HHHHHHHHGGGS---CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999998735404---87888999999999976447-28999999999999986231354246899999999999998575
Q ss_pred C--HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC-------C-----CCCCH-HHHHHHHHHHHHHHC
Q ss_conf 1--4589999999999999826668851146521599999997299-------9-----98442-769999999999833
Q 002697 533 Q--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLP-------N-----SDKDL-FPLLECFTSIAQALG 597 (891)
Q Consensus 533 ~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-------~-----~~~~~-~~~~~~l~~i~~~~~ 597 (891)
+ ..++..++++++.++...+.... +|+..++|.+++.|.... . ....+ ..++++++.++..+|
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVA--ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP 588 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGH--HHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86158999999999999997626569--9999999999999998875320138855677799999999999999999855
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 0012331999999999999889874237646898833-589988666799999883428752022128999999726998
Q 002697 598 AGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDK-EFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDA 676 (891)
Q Consensus 598 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~-~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 676 (891)
..+.||.+.+++.++..+... +. .++..++.+++.++...|..+.+|++. +++.+...+++++
T Consensus 589 ~~~~~~~~~l~~~l~~~l~~~--------------~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~~ 652 (861)
T 2bpt_A 589 SSVEPVADMLMGLFFRLLEKK--------------DSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVD 652 (861)
T ss_dssp GGTGGGHHHHHHHHHHHHHST--------------TGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCC
T ss_conf 634789999999999997467--------------887579999999999999976609999999--9999998865566
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 57999999999699876257668729999999998319999867543755599999898985011243589999999999
Q 002697 677 SDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVP 756 (891)
Q Consensus 677 ~~vr~~a~~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~ 756 (891)
..+|..++.+++++++.++..+.||++.+++.+.+.+.+++. +..+|..++.++|.++...+..|.||++.+++.+..
T Consensus 653 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~ 730 (861)
T 2bpt_A 653 SPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNA--RRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVA 730 (861)
T ss_dssp SHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTC--CTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 789999999999999874540311199999999997278655--676659999999999998405089999999999999
Q ss_pred HHCCCH--------HHHHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHCCCC--C-CCHHHHHHHHHHHHHH
Q ss_conf 731771--------2214288869999865532067---765754668899999651289--9-9267789999999999
Q 002697 757 ILKHSE--------ELNKSLIENSAITLGRLAWVCP---ELVSPHMEHFMQPWCIALSMI--R-DDTEKEDAFRGLCAMV 822 (891)
Q Consensus 757 ~l~~~~--------~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~~l~~~~~~l~~~--~-~~~e~~~~~~~l~~l~ 822 (891)
.+.... +....++.+++.+++.++...+ ..+.++++.+++.+...+.+. . +..-+..++..+..+.
T Consensus 731 ~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~ 810 (861)
T 2bpt_A 731 AQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIA 810 (861)
T ss_dssp HHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 97367899975889999999999999999999998267788999999999999998748555786999999999999999
Q ss_pred HHC-HHHHHHHHH-HHHHHHHC
Q ss_conf 619-343675199-99667311
Q 002697 823 KAN-PSGALSSLV-FMCRAIAS 842 (891)
Q Consensus 823 ~~~-~~~~~~~l~-~~~~~~~~ 842 (891)
... ++.+.++++ .++..+++
T Consensus 811 ~~~~g~~~~~~~~~~~~~~ll~ 832 (861)
T 2bpt_A 811 AMFPDGSIKQFYGQDWVIDYIK 832 (861)
T ss_dssp HHCTTSTTGGGTTCHHHHHHHH
T ss_pred HHCCCCHHHHHHHCHHHHHHHH
T ss_conf 8828824889872679999999
No 3
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=508.82 Aligned_cols=808 Identities=13% Similarity=0.172 Sum_probs=609.3
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC------CC
Q ss_conf 499999999971199998889999999998733999077999986304788988999999999996774216------69
Q 002697 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK------SM 86 (891)
Q Consensus 13 ~~~~~~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~------~~ 86 (891)
.++++.++|.+++|||++ +| |+++|+++++.|+|+.+|.+++.+ .+.+.++|++|++.|||.+.++|. .+
T Consensus 3 d~~~l~~~L~~~~spd~~-~r--Ae~~L~~~~~~p~~~~~L~~il~~-~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l 78 (960)
T 1wa5_C 3 DLETVAKFLAESVIASTA-KT--SERNLRQLETQDGFGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLL 78 (960)
T ss_dssp HHHHHHHHHHHTTSGGGH-HH--HHHHHHHHHTSTTHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSS
T ss_pred CHHHHHHHHHHHCCCCHH-HH--HHHHHHHHHCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 599999999976599878-99--999999855599889999999865-79888899999999999998548876567889
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHCC
Q ss_conf 96569999996855541699679999999999999612659638999999997215993477399999999983151100
Q 002697 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (891)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~ 166 (891)
+++.+..||+.+++++.+++..+|++++.+++.|++.++++.||++++.|.+.++++++..+++++.++..+++.....+
T Consensus 79 ~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~ 158 (960)
T 1wa5_C 79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF 158 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999998087999999999999999861713015799999998478988999999999999999988761
Q ss_pred CCC-CCCCCCCCHHHHHHHHHH-------HHCCCCH---------HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 357-999887613525999998-------6049999---------99999999999985-01524659949999999998
Q 002697 167 DSD-VPGLAECPINIFLPRLLQ-------FFQSPHT---------SLRKLSLGSVNQFI-MLMPSALFVSMDQYLQGLFL 228 (891)
Q Consensus 167 ~~~-~~~~~~~~~~~l~~~l~~-------~l~~~~~---------~vr~~al~~l~~~~-~~~~~~~~~~~~~~l~~l~~ 228 (891)
.+. ....+...+..+++.+++ .++++.. .++..+++++..+. ...+..+..+++.+++.+..
T Consensus 159 ~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (960)
T 1wa5_C 159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHK 238 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 48477899999999989999999999999987357987999999999999999999986256559999989999999999
Q ss_pred HHCC------C--C-------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHH
Q ss_conf 6079------9--8-------78999999999998943802146769999999975317-----9888899999989999
Q 002697 229 LSND------P--S-------AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHS 288 (891)
Q Consensus 229 ~~~~------~--~-------~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~-----~~~~~v~~~a~~~l~~ 288 (891)
.+.. . + ..+++.+|.++..+.+.+++.+.+|++.+++.+++.+. ..++.++..+++||..
T Consensus 239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 97689985557855331327999999999999999999899999999999999999998437776728999999999999
Q ss_pred HHCCCCCHHHHH--HHHHHHH-HHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 520577423477--6543369-9998311578133565311015889897778874322345789999999873100103
Q 002697 289 YFEAQLPHENLK--EFLPRLV-PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW 365 (891)
Q Consensus 289 l~~~~~~~~~~~--~~l~~li-~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~ 365 (891)
+++.+..+..++ +++..++ +.+++.|.++++|.+.|++|+++ +++ ++. +..+.|
T Consensus 319 ~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e-------~i~-----------~d~-----e~~d~~ 375 (960)
T 1wa5_C 319 VTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIE-------YIR-----------RDL-----EGSDTD 375 (960)
T ss_dssp HHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHH-------HHH-----------HHH-----HC----
T ss_pred HHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHH-------HHH-----------HCC-----CCCCCC
T ss_conf 968676899876851899999999687348888789988449999-------998-----------635-----755123
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC------CCCCCCHHHHHHHHHHHHHHHHC---CHHHHHH-----HH
Q ss_conf 3788899999999977196405415899998550------38986357789999999998632---1342551-----09
Q 002697 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS------ASGDEAWKDREAAVLALGAIAEG---CIKGLYP-----HL 431 (891)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~il~~l~~~l~------~~~~~~~~~r~~a~~~l~~l~~~---~~~~~~~-----~l 431 (891)
++|.+|..+++.++..+++.+++.+++.+.+.+. +.+ |+.|++|++++|.++++ +...... .+
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~---w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKN---WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----C---HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 7188999999999997013278999999999998736696121---7999999999999998741256774123443569
Q ss_pred HH-HHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 89-999996105899---84799999999986598876520787404449999999999962999899999999999999
Q 002697 432 SE-IVAFLIPLLDDK---FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (891)
Q Consensus 432 ~~-i~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (891)
.. +...+++.+.++ ++.||.+|||++|++++++ ..+++..+++.++..+.|++.+||..||+|+.+|+
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--------~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--------TKAQLIELMPILATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--------CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999997378744998888330398999999988658--------99999999999999848997219999999999998
Q ss_pred HH-----------HCCCCHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99-----------124515869999999999970021-----45899999999999998266688511465215999999
Q 002697 508 EE-----------AAEELAPRLEIILQHLMMAFGKYQ-----RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (891)
Q Consensus 508 ~~-----------~~~~~~~~l~~i~~~l~~~l~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~ 571 (891)
+. .++.+.||++.+++.++.+++... ......++++++.++...++.+. ||+..+++.+...
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~--p~~~~l~~~L~~~ 602 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQ--PLFPQLLAQFIEI 602 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTG--GGHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_conf 44364446654435987564699999999999971467877643227999999999998888612--4799999999999
Q ss_pred HHCCC--CCCCCH-HHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 97299--998442-7699999999998330-0123319999999999998898742376468988335899886667999
Q 002697 572 WQQLP--NSDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGL 647 (891)
Q Consensus 572 l~~~~--~~~~~~-~~~~~~l~~i~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l 647 (891)
+.... .+++.. ..+++|++.++.+.+. .+.++.+.+++.+..++... ..++...++..++.+
T Consensus 603 l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~--------------~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 603 VTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED--------------IQEFIPYVFQIIAFV 668 (960)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT--------------CTTTHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
T ss_conf 999973989727889999999999963895369999999999999999860--------------576699999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 9988342875202212899999--97269985799999999969987625766872999999999831999986754375
Q 002697 648 AEGLGSGIESLVAQSNLRDMLL--QCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVA 725 (891)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~~~vr~~a~~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~v~ 725 (891)
.... ..+.+++.+ +++.+. ..++... .......++..++...++.+.. ++.++..+.+.+.+. . .+
T Consensus 669 ~~~~-~~~~~~~~~--~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~----~--~~ 736 (960)
T 1wa5_C 669 VEQS-ATIPESIKP--LAQPLLAPNVWELKG--NIPAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASK----A--YE 736 (960)
T ss_dssp HHHC-SSCCTTTGG--GHHHHTSGGGGCCTT--THHHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCT----T--TH
T ss_pred HHHC-CCCCHHHHH--HHHHHCCHHHHCCCC--CCHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHCCC----C--CC
T ss_conf 9735-478899999--999980999855778--7355899999999768499999-999999999996799----4--20
Q ss_pred HHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCC---------CHHHH
Q ss_conf 55999998989850112-4358999999999973177122142888699998655320-6776575---------46688
Q 002697 726 NNACWAIGELAVKARQE-ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWV-CPELVSP---------HMEHF 794 (891)
Q Consensus 726 ~~a~~alg~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~---------~~~~~ 794 (891)
..+++.+|.++..++.+ +.||++.++..++..+..+. ....+...+..++.++.. +|+.+.+ +...+
T Consensus 737 ~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~ 814 (960)
T 1wa5_C 737 VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSK--TERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIW 814 (960)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSC--CHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHH
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
T ss_conf 35999999999979877789889999999999983177--4749999999999999870879999999841605899999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHC--------CC-----C-------------
Q ss_conf 9999965128999267789999999999619---34367519999667311--------34-----4-------------
Q 002697 795 MQPWCIALSMIRDDTEKEDAFRGLCAMVKAN---PSGALSSLVFMCRAIAS--------WH-----E------------- 845 (891)
Q Consensus 795 l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~---~~~~~~~l~~~~~~~~~--------~~-----~------------- 845 (891)
...|+..+....+.+||+.++.|+++++..+ |+.+.+.++.++.++++ .. +
T Consensus 815 ~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~e~~d~~~~~~~~~~ 894 (960)
T 1wa5_C 815 GNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDLDNLEEISTFGSH 894 (960)
T ss_dssp HHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHSCSTTCSCCSCC-----CCCCCTTCC
T ss_pred HHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99853660301678989999999999986512230357888999999999997087624467753322321001240168
Q ss_pred -------------C--CC---HHHHHHHHHHHHHHHHHCCHHHHHHH-HHCCCHHHHHHHHHC
Q ss_conf -------------5--73---66899999999999921172459998-931998899886106
Q 002697 846 -------------I--RS---EELHNEVCQVLHGYKQMLRNGAWDQC-MSALEPPVKDKLSKY 889 (891)
Q Consensus 846 -------------~--~~---~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~ 889 (891)
| .- .+++..+.+.+..+.+..++ .|... ..+++++.++.|+.|
T Consensus 895 ~~~L~~~~~~~~dp~~~i~~~~d~~~~~~~~l~~~~~~~~~-~~~~l~~~~l~~~~~~~l~~~ 956 (960)
T 1wa5_C 895 FSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGN-TFLNTILPQLTQENQVKLNQL 956 (960)
T ss_dssp CCCCGGGCCCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTS-CHHHHHGGGSCHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCC-HHHHHHHCCCCHHHHHHHHHH
T ss_conf 89988187889998344157678899999999997513972-488998616999999999998
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=508.56 Aligned_cols=775 Identities=20% Similarity=0.255 Sum_probs=625.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-----------HHH
Q ss_conf 9999999711999988899999999987339--990779999863047889889999999999967-----------742
Q 002697 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (891)
Q Consensus 16 ~~~~~l~~~~s~d~~~~r~~a~~~L~~~~~~--p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i-----------~~~ 82 (891)
++.++|.++.|+|++ +|++|+++|+++... |+++..|++++.+ ++.++.+|++|++.|||.+ .++
T Consensus 2 ~l~~~L~~~~s~d~~-~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 2 ELITILEKTVSPDRL-ELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 689999976298989-999999999998716804699999999857-899879999999999876055434767899864
Q ss_pred HCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Q ss_conf 16699656999999685554169967999999999999961265-96389999999972159--9347739999999998
Q 002697 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN--DINHMEGAMDALSKIC 159 (891)
Q Consensus 83 w~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-~~w~~ll~~L~~~l~~~--~~~~r~~al~~L~~l~ 159 (891)
|..++++.+..+|+.+++.+.+++..+ +.++.+++.+++.+++ ..||++++.+.+.+.++ ++.+|++++.+++.++
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 406999999999999999867994788-9999999999984676225688999999987088987999999999999998
Q ss_pred HHCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHHHCCCCH
Q ss_conf 315110035799988761352599999860499--9999999999999985015246599--499999999986079987
Q 002697 160 EDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLLSNDPSA 235 (891)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~ 235 (891)
+...... +....+.+++.+.+.+.++ +..+|..++++++.++...+..+.. ..+.+++.+...+.+.+.
T Consensus 159 ~~~~~~~-------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 231 (876)
T 1qgr_A 159 QDIDPEQ-------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (876)
T ss_dssp HHSCHHH-------HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HHCCHHH-------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 7458766-------786799999999986167999889999999999999999999887178999999999987179988
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-------------------CC
Q ss_conf 89999999999989438021467699-99999975317988889999998999952057-------------------74
Q 002697 236 EVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-------------------LP 295 (891)
Q Consensus 236 ~vr~~~~~~l~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~-------------------~~ 295 (891)
++|..++++|..+...+++.+.+++. .+++.++..+.+.++++|..++++|..+++.. ..
T Consensus 232 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (876)
T 1qgr_A 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (876)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 99999999999999986999998877899999999963873499999999999998878767665100112477754201
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 23477654336999983115781335653110158898977788743223457899999998731001033788899999
Q 002697 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (891)
Q Consensus 296 ~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l 375 (891)
....++++..+++.++..+...++ | + ++++|++|.++..++
T Consensus 312 ~~~~~~~~~~ll~~ll~~l~~~~~-----------------------------------d-~---~~~~~~~r~~a~~~l 352 (876)
T 1qgr_A 312 KFYAKGALQYLVPILTQTLTKQDE-----------------------------------N-D---DDDDWNPCKAAGVCL 352 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCS-----------------------------------S-C---CTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-----------------------------------C-C---CCCCCHHHHHHHHHH
T ss_conf 899999898870799987531334-----------------------------------4-4---545217999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9999771964054158999985503898635778999999999863213-425510989999996105899847999999
Q 002697 376 DVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISC 454 (891)
Q Consensus 376 ~~l~~~~~~~~~~~il~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 454 (891)
+.++...++.+++.+++.+...+.+.+ |+.|++++.++|.+++++. +.+.++++.+++.++..++|+++.||.+|+
T Consensus 353 ~~l~~~~~~~~~~~~l~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~ 429 (876)
T 1qgr_A 353 MLLATCCEDDIVPHVLPFIKEHIKNPD---WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (876)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 999987758669999999998846998---28999999999999748877789999999999999986799789999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC--------------CCCHHHHHH
Q ss_conf 999865988765207874044499999999999629998999999999999999912--------------451586999
Q 002697 455 WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA--------------EELAPRLEI 520 (891)
Q Consensus 455 ~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~--------------~~~~~~l~~ 520 (891)
|+++++++++.... ...+++..+++.++..+.++ +.||..+++++..+++.++ ..+.||++.
T Consensus 430 ~~l~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (876)
T 1qgr_A 430 WTVGRICELLPEAA---INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 505 (876)
T ss_dssp HHHHHHHHHCGGGT---SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHH
T ss_pred HHHHHHHHHCCHHC---CCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999998572011---44777999999999987588-889999999999999985020123444455540321576999
Q ss_pred HHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC--------CCCCC----CH-HH
Q ss_conf 9999999970021---458999999999999982666885114652159999999729--------99984----42-76
Q 002697 521 ILQHLMMAFGKYQ---RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--------PNSDK----DL-FP 584 (891)
Q Consensus 521 i~~~l~~~l~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------~~~~~----~~-~~ 584 (891)
+++.+...+...+ ...+..++++++.++...|.... +|+..++|.+++.|... +++++ .+ ..
T Consensus 506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~ 583 (876)
T 1qgr_A 506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCY--PAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSL 583 (876)
T ss_dssp HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTH--HHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999999997276742046999999999999997743118--999999999999999999887124886359999999999
Q ss_pred HHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 9999999999833-001233199999999999988987423764689883358998866679999988342875202212
Q 002697 585 LLECFTSIAQALG-AGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSN 663 (891)
Q Consensus 585 ~~~~l~~i~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~ 663 (891)
++.+++.++..+| ..+.||++.+++.+++.+..... .+.++..++.+++.++..+|..+.+|++.
T Consensus 584 ~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~------------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-- 649 (876)
T 1qgr_A 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG------------SGGVQEDALMAVSTLVEVLGGEFLKYMEA-- 649 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHHHGGGGGGGHHH--
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 9999999999828542057899999999999985368------------88850899999999999987609999999--
Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 899999972699-8579999999996998762576687299999999983199998675437555999998989850112
Q 002697 664 LRDMLLQCCMDD-ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQE 742 (891)
Q Consensus 664 l~~~l~~~~~~~-~~~vr~~a~~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~ 742 (891)
+++.+...+++. +..+|..++.++++++..++..+.||++.+++.+.+.+.+.+. +..+|..+++++|.++...|..
T Consensus 650 ~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~~~~~~l~~i~~~~g~~ 727 (876)
T 1qgr_A 650 FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENV--HRSVKPQILSVFGDIALAIGGE 727 (876)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTS--CGGGHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHCHH
T ss_conf 99999998758650879999999999999988785464599999999997487123--3876399999999999970352
Q ss_pred HHHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHHHHHHHHHCC----------CCCCCCHHHHHHHHHHHCCC
Q ss_conf 435899999999997317712--------214288869999865532067----------76575466889999965128
Q 002697 743 ISPIVMTVVLCLVPILKHSEE--------LNKSLIENSAITLGRLAWVCP----------ELVSPHMEHFMQPWCIALSM 804 (891)
Q Consensus 743 ~~~~~~~il~~l~~~l~~~~~--------~~~~~~~~~~~~l~~l~~~~~----------~~~~~~~~~~l~~~~~~l~~ 804 (891)
+.+|++.+++.+...+..... ....+++.+..+++.+....+ ..+.+|++.+++.+......
T Consensus 728 ~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 807 (876)
T 1qgr_A 728 FKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGD 807 (876)
T ss_dssp GGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79999999999999985558999758899999999999999999999974575555543889999999999999998658
Q ss_pred CC-CCHHHHHHHHHHHHHHHHCHH-HHHHH-HHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99-926778999999999961934-36751-9999667311-3445736689999999999992
Q 002697 805 IR-DDTEKEDAFRGLCAMVKANPS-GALSS-LVFMCRAIAS-WHEIRSEELHNEVCQVLHGYKQ 864 (891)
Q Consensus 805 ~~-~~~e~~~~~~~l~~l~~~~~~-~~~~~-l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 864 (891)
.. +...+..+..++..++...+. .+.++ .+.++..++. ....+.++++..+...+..+++
T Consensus 808 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 808 EDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 8888899999999999999882848899997048999999987546887689999999999997
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=419.52 Aligned_cols=701 Identities=12% Similarity=0.160 Sum_probs=485.4
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 49999999997119999888999999999873399907799998630478898899999999999677421669965699
Q 002697 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (891)
Q Consensus 13 ~~~~~~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~ 92 (891)
.++++.+++...++||++ .|++|+++|+++++.|++|.++.+++.. +.+.++|++|++.|||.|.++|..++++.+.
T Consensus 5 d~~~l~~~l~~~~~~d~~-~r~~A~~~L~~~~~~p~~w~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~ 81 (971)
T 2x1g_F 5 DIARLEEAVVSFYRSNSQ-NQAITHEWLTDAEASPQAWQFSWQLMQL--GKSQEVQFFGAITLHSKLMKHWHEVPPENRE 81 (971)
T ss_dssp ------CTHHHHHTSTTT-C----CHHHHHTTTSTHHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHH
T ss_pred HHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHCCHHHCCHHHHH
T ss_conf 599999999987699999-9999999999987497989999999835--9949899999999999997158649999999
Q ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHCH
Q ss_conf 999968555416---996799999999999996126596389999999972159------93477399999999983151
Q 002697 93 YIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN------DINHMEGAMDALSKICEDIP 163 (891)
Q Consensus 93 ~i~~~ll~~l~~---~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~L~~~l~~~------~~~~r~~al~~L~~l~~~~~ 163 (891)
.+|+.+++.+.+ .+..||++++.+++.|++.+++ .||++++.+.+.++++ ++..++.++.+|..++++..
T Consensus 82 ~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 82 ELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999986799878999999999999997062-243799999999715334567878899999999998599882
Q ss_pred HCCCCCCC----CCCCCCHHHHHHHHHHHHCCC-C-------HHHHHHHHHHHHHHHC--CCCHH---------------
Q ss_conf 10035799----988761352599999860499-9-------9999999999999850--15246---------------
Q 002697 164 QVLDSDVP----GLAECPINIFLPRLLQFFQSP-H-------TSLRKLSLGSVNQFIM--LMPSA--------------- 214 (891)
Q Consensus 164 ~~~~~~~~----~~~~~~~~~l~~~l~~~l~~~-~-------~~vr~~al~~l~~~~~--~~~~~--------------- 214 (891)
..-....+ ..+....+.+++.+.+.+++. + ..++..+++|+..++. +.|..
T Consensus 161 ~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~L~~~ 240 (971)
T 2x1g_F 161 VIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHK 240 (971)
T ss_dssp HCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 46857899999999998799999999999855467888864236799999999999825783865663199999864355
Q ss_pred ---------------------------------------HHHHHHHHHHHHHH-------HHCCCC---HHHHHHHHHHH
Q ss_conf ---------------------------------------59949999999998-------607998---78999999999
Q 002697 215 ---------------------------------------LFVSMDQYLQGLFL-------LSNDPS---AEVRKLVCAAF 245 (891)
Q Consensus 215 ---------------------------------------~~~~~~~~l~~l~~-------~~~~~~---~~vr~~~~~~l 245 (891)
..+.+..+++.+.. ...+.+ .+.....++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~ 320 (971)
T 2x1g_F 241 CYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLF 320 (971)
T ss_dssp HHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 30232356655567677479999999999997680113208899999999998689999998565654068999999999
Q ss_pred HHHHHHCHHHHH-----------HHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHCC----------CCCHHHH
Q ss_conf 998943802146-----------7699999999753179-----8888999999899995205----------7742347
Q 002697 246 NLLIEVRPSFLE-----------PHLRNLFEYMLQVNKD-----TDDDVALEACEFWHSYFEA----------QLPHENL 299 (891)
Q Consensus 246 ~~l~~~~~~~~~-----------~~l~~i~~~~~~~~~~-----~~~~v~~~a~~~l~~l~~~----------~~~~~~~ 299 (891)
..+.+.++..+. +++..+++.++..... .+++++..+++||..+++. +.....+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~ 400 (971)
T 2x1g_F 321 VSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYI 400 (971)
T ss_dssp HHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999999999987315765354999999999999975888888631245878999999999997413310008999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 76543369999831157813356531101588989777887432234578999999987310010337888999999999
Q 002697 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (891)
Q Consensus 300 ~~~l~~li~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~ 379 (891)
++++..+++.++..+.+.+++ + + ++. +.++..+..++|+++..++..++
T Consensus 401 ~~~~~~ll~~l~~~~~~p~~~-~-~---------------------------~~~--d~~e~~~f~~~R~~~~~~l~~~~ 449 (971)
T 2x1g_F 401 KPLYAHLTRILVRKSEQPDEK-S-L---------------------------AKW--SSDDLECFRCYRQDISDTFMYCY 449 (971)
T ss_dssp HHHHHHHHHHHHHHTSCCCTT-T-T---------------------------SCS--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCC-C-C---------------------------CCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999986199962-4-3---------------------------356--77579999999999999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC--CCCHHHHHH
Q ss_conf 771964054158999985503-----8986357789999999998632134255109899999961058--998479999
Q 002697 380 NVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD--DKFPLIRSI 452 (891)
Q Consensus 380 ~~~~~~~~~~il~~l~~~l~~-----~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~ 452 (891)
...|+.+++.+++.+...+.+ .+ |+.|++++++++.+++++.+...++++.+++ ++..+. |+++.||.+
T Consensus 450 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~---w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 450 DVLNDYILEILAAMLDEAIADLQRHPTH---WTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGT 525 (971)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHCTTC---CHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHCCCCCCCHHHHHH
T ss_conf 9970999999999999999734689873---8999999999999983548033477999999-99856765367899999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-
Q ss_conf 9999986598876520787404449999999999962999899999999999999991245158699999999999700-
Q 002697 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK- 531 (891)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~- 531 (891)
++|++|++++++.. ..+++..+++.++..+ + +.|+..|+.++.++++.++..+.||++.+++.+..++++
T Consensus 526 a~~~l~~~~~~l~~------~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~ 596 (971)
T 2x1g_F 526 ALETMGSYCNWLME------NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG 596 (971)
T ss_dssp HHHHHHHTHHHHC----------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH-C--HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 99999987888860------8898999999999874-8--5889999999999999988862300799999999997278
Q ss_pred -CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHHHCC-----
Q ss_conf -214589999999999999826668851146521599999997299998-------4427699999999998330-----
Q 002697 532 -YQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSD-------KDLFPLLECFTSIAQALGA----- 598 (891)
Q Consensus 532 -~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-------~~~~~~~~~l~~i~~~~~~----- 598 (891)
.+...+..++++++.++...+... ..+|+..+++++.+.|+....+. ......+++++.+...++.
T Consensus 597 ~~~~~~~~~~~~ai~~i~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~ 675 (971)
T 2x1g_F 597 RMKNSDSVRLMFSIGKLMSLLRPEE-IPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQ 675 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCTTH-HHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9992899999999999997299999-999999999899999999985689982259999999999999984167776853
Q ss_pred --------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf --------012331999999999999889874237646898833589988666799999883428752022128999999
Q 002697 599 --------GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQ 670 (891)
Q Consensus 599 --------~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~ 670 (891)
.+.++.+.+++.+..++.... .+..+++.+..+++.++..+|+.+.|+++. +++.+..
T Consensus 676 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~------------~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~--~~~~l~~ 741 (971)
T 2x1g_F 676 ATDQPIVQPVLLVMQRTMPIFKRIAEMWV------------EEIDVLEAACSAMKHAITNLRSSFQPMLQD--LCLFIVA 741 (971)
T ss_dssp --------CCHHHHHTTHHHHHHHHHHTT------------TCHHHHHHHHHHHHHHHHHHHC--CTHHHH--HHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHH
T ss_conf 33456788369999999999999998643------------637899999999999998614404252789--9999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHCHHH------HHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHCHH
Q ss_conf 726998579999999996998762576------6872999999999831999---9867543755599999898985011
Q 002697 671 CCMDDASDVRQSAFALLGDLARVCPVH------LQARLSDFLDIAAKQLNTP---KLKETVSVANNACWAIGELAVKARQ 741 (891)
Q Consensus 671 ~~~~~~~~vr~~a~~~l~~i~~~~~~~------~~~~l~~i~~~l~~~l~~~---~~~~~~~v~~~a~~alg~l~~~~~~ 741 (891)
.++.... .+++.+++.++..++.. +.+.+..++..++..+... ...+.+++++.....++.++.+.+.
T Consensus 742 ~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~ 818 (971)
T 2x1g_F 742 SFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQ 818 (971)
T ss_dssp HCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGG
T ss_pred HHHCCCC---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 9866883---4999999999999588900589999999999999999986065467764844899999999999986859
Q ss_pred HHH--HH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 243--58-999999999973177122142888699998655320
Q 002697 742 EIS--PI-VMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWV 782 (891)
Q Consensus 742 ~~~--~~-~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 782 (891)
.+. |. +..++...+..+.... ......++.++..++..
T Consensus 819 ~~~~s~~~l~~i~~~~~~~l~~~~---~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 819 VLEDKTLAYDRLVFYAQRGMTLPE---SGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp GGGCTTSCHHHHHHHHHHHHTSSC---SSHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHC
T ss_conf 981882128999999999828787---78999999999999860
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=418.00 Aligned_cols=573 Identities=14% Similarity=0.239 Sum_probs=431.9
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 96649999999997119999888999999999873399907799998630478898899999999999677421669965
Q 002697 10 QEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (891)
Q Consensus 10 ~~~~~~~~~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~ 89 (891)
.+..++++.+++..+++|+++ +|++|+++|++++++|++|..+.+++.+ +.+..+|++|++.||+.+.++|..++++
T Consensus 11 ~~~~~~~l~~~l~~~~~p~~~-~r~~Ae~~L~~~~~~p~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~ 87 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPND 87 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHSTTGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred CCCCHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 846599999999998689938-9999999999988395699999999862--9988999999999999997607049999
Q ss_pred HHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6999999685554169---------9679999999999999612659638999999997215993477399999999983
Q 002697 90 NQQYIKSELLPCLGAA---------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICE 160 (891)
Q Consensus 90 ~~~~i~~~ll~~l~~~---------~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~ 160 (891)
.+..||+.++..+.+. +..+|++++.+++.|++.++++.||++++.+.+.++ .++..++.++.+|..+++
T Consensus 88 ~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~e 166 (1049)
T 3m1i_C 88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSE 166 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999862776200000289999999999999997681115479999999871-585889999999999999
Q ss_pred HCHHCCCCCCC--------CCCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCHHHHH--------------
Q ss_conf 15110035799--------98876135259999986049-99999999999999985015246599--------------
Q 002697 161 DIPQVLDSDVP--------GLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFV-------------- 217 (891)
Q Consensus 161 ~~~~~~~~~~~--------~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~-------------- 217 (891)
+....-..+.. ..+....+.+++.+.+.+++ ++..++..+++|+..++.+.+....-
T Consensus 167 ev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~ 246 (1049)
T 3m1i_C 167 EVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT 246 (1049)
T ss_dssp HHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99872600132689999999999999999999999998668889999999999999860889988605599999998689
Q ss_pred -----------------------------HH----HHHHHHHHH--------------HHCCCCHHHHHHHHHHHHHHHH
Q ss_conf -----------------------------49----999999998--------------6079987899999999999894
Q 002697 218 -----------------------------SM----DQYLQGLFL--------------LSNDPSAEVRKLVCAAFNLLIE 250 (891)
Q Consensus 218 -----------------------------~~----~~~l~~l~~--------------~~~~~~~~vr~~~~~~l~~l~~ 250 (891)
.+ +.++..+.. ...+.+.+.....+..+..+.+
T Consensus 247 ~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~ 326 (1049)
T 3m1i_C 247 SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLA 326 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 87679999999999994889950346889999999999999988627985417877445771028999999999999999
Q ss_pred HCHHH------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 38021------467699999999753179888899999989999520----57742347765433699998311578133
Q 002697 251 VRPSF------LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE----AQLPHENLKEFLPRLVPVLLSNMIYADDD 320 (891)
Q Consensus 251 ~~~~~------~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~l~~li~~ll~~l~~~~~d 320 (891)
.+.+. +.+++..+++.++.+....+++++..+++||..+++ .+......++++.++++.++..|.+.+ |
T Consensus 327 ~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e-d 405 (1049)
T 3m1i_C 327 RNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE-E 405 (1049)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT-T
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCC-C
T ss_conf 999998288214799999999999988689089999999999999999974635899999999999999998658996-2
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 56531101588989777887432234578999999987310010337888999999999771964054158999985503
Q 002697 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA 400 (891)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~il~~l~~~l~~ 400 (891)
.+|.++++. ++++ + +. + +.+.|+.|+++..+|..++...+..+++.+.+.+...+.+
T Consensus 406 ~~~~~dd~~-------e~~r-----------~-~~-~---d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~ 462 (1049)
T 3m1i_C 406 VLVVENDEG-------EIVR-----------E-FV-K---ESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDG 462 (1049)
T ss_dssp CCEEECTTS-------CEEE-----------C-SS-C---CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTS
T ss_pred EEEEECCCC-------CCHH-----------H-HH-C---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 000057998-------5048-----------6-53-1---2227999999999999988369899999999999987277
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 8986357789999999998632134255-109899999961058-----9984799999999986598876520787404
Q 002697 401 SGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (891)
Q Consensus 401 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (891)
. ..+|+.++++++++|.+++++.+... .+++.+++.+..... ++++.+|.+++|++|++++|+.. ..
T Consensus 463 ~-~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~------~~ 535 (1049)
T 3m1i_C 463 S-EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA------HW 535 (1049)
T ss_dssp S-SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH------CH
T ss_pred C-CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH------HH
T ss_conf 8-7898999999999999860237625579999999999987765435665499998899999977999986------78
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCH--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 44999999999996299989999999999999999124515--------8699999999999700214589999999999
Q 002697 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA--------PRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (891)
Q Consensus 475 ~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~--------~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (891)
.++..+++.++..+.+++++|+..||.++.++++.++..+. ||++.++..+..++...+......++++++.
T Consensus 536 ~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ 615 (1049)
T 3m1i_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999999986189878999999999999999889861156778775799999989999985899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC------C---CC----CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9998266688511465215999999972999------9---84----427699999999998330012331999999999
Q 002697 547 LADAVGFELNQPVYLDILMPPLIAKWQQLPN------S---DK----DLFPLLECFTSIAQALGAGFTQFAQPVFQRCIN 613 (891)
Q Consensus 547 l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~------~---~~----~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~ 613 (891)
++...+......+|+..+|+++.+.|..... + +. .+..+++|++.++..+|..|.|+++.++..++.
T Consensus 616 ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~ 695 (1049)
T 3m1i_C 616 IISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQ 695 (1049)
T ss_dssp HHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99759978999999999998899999999998731646404879999999999999999998567889999999999999
Q ss_pred HHHH
Q ss_conf 9998
Q 002697 614 IIQT 617 (891)
Q Consensus 614 ~l~~ 617 (891)
++..
T Consensus 696 ~~~~ 699 (1049)
T 3m1i_C 696 LYRA 699 (1049)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 7
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=415.99 Aligned_cols=755 Identities=15% Similarity=0.168 Sum_probs=536.4
Q ss_pred HHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 6649999999997-119999888999999999873399907799998630478898899999999999677421669965
Q 002697 11 EQGFNEICRLLEQ-QISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (891)
Q Consensus 11 ~~~~~~~~~~l~~-~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~ 89 (891)
+..++++.+++.. ..++|++ .|++|+++|++++++|++|.++..++.+ +.+.++|++|++.|||.|.++|..++++
T Consensus 20 ~~~~~~l~~~l~~l~~~~~~~-~r~~A~~~L~~~~~~p~~~~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 20 DFTVENVEKALHQLYYDPNIE-NKNLAQKWLMQAQVSPQAWHFSWQLLQP--DKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp CCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHSTTHHHHHHHHTST--TSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCHHHCCHH
T ss_conf 755999999999983597989-9999999999984699999999998657--9725889999999999997388749999
Q ss_pred HHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHH
Q ss_conf 699999968555416---99679999999999999612659638999999997215-----9934773999999999831
Q 002697 90 NQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-----NDINHMEGAMDALSKICED 161 (891)
Q Consensus 90 ~~~~i~~~ll~~l~~---~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~L~~~l~~-----~~~~~r~~al~~L~~l~~~ 161 (891)
.+..+|+.+++.+.+ .+..+|++++.+++.|++.+++..||++++.+.+.+++ +++..++.++.+|..++++
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee 176 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEE 176 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHH
T ss_conf 99999999999999874898899999999999999874831155599999999864335787478899999999868998
Q ss_pred CHHC-CC----CCCCCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHC-------------------------
Q ss_conf 5110-03----5799988761352599999860499--99999999999999850-------------------------
Q 002697 162 IPQV-LD----SDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIM------------------------- 209 (891)
Q Consensus 162 ~~~~-~~----~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~al~~l~~~~~------------------------- 209 (891)
.... .. ......+....+.+++.+.+.+.+. ...++..+++|+..++.
T Consensus 177 ~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~ 256 (963)
T 2x19_B 177 FQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELF 256 (963)
T ss_dssp HTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHH
T ss_conf 85065869999999999998788999999999827788057999999999999828998534168999999986796479
Q ss_pred ------------CC-CHHHHHHHHHHHHHHHH-------HHCCCCHHHHHHHHHHHHHHHHHCHHHHH------HHHHHH
Q ss_conf ------------15-24659949999999998-------60799878999999999998943802146------769999
Q 002697 210 ------------LM-PSALFVSMDQYLQGLFL-------LSNDPSAEVRKLVCAAFNLLIEVRPSFLE------PHLRNL 263 (891)
Q Consensus 210 ------------~~-~~~~~~~~~~~l~~l~~-------~~~~~~~~vr~~~~~~l~~l~~~~~~~~~------~~l~~i 263 (891)
.. +....+.+..+++.++. ...+.+.+.....++.+..+.+.++..+. +++..+
T Consensus 257 ~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 336 (963)
T 2x19_B 257 DSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLAL 336 (963)
T ss_dssp HHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99999999997531124577999999999974079999999877989999999999999998699997375565899999
Q ss_pred HHHHHHHCCC-----CCHHHHHHHHHHHHHHHCC---------CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 9999753179-----8888999999899995205---------7742347765433699998311578133565311015
Q 002697 264 FEYMLQVNKD-----TDDDVALEACEFWHSYFEA---------QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEED 329 (891)
Q Consensus 264 ~~~~~~~~~~-----~~~~v~~~a~~~l~~l~~~---------~~~~~~~~~~l~~li~~ll~~l~~~~~d~~~~~~~~~ 329 (891)
++.++....+ .+++++..+++||..+++. +.....+++++.++++.++..|.+.+++. |++
T Consensus 337 l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~--~~~--- 411 (963)
T 2x19_B 337 VNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEE--YGF--- 411 (963)
T ss_dssp HHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH--HHT---
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCC---
T ss_conf 999999975888887203454412999999999998623444578899999999999999999980998302--267---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCCCC
Q ss_conf 889897778874322345789999999873100103-378889999999997719640541589999855----038986
Q 002697 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW-NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKL----SASGDE 404 (891)
Q Consensus 330 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~il~~l~~~l----~~~~~~ 404 (891)
.++| +.+.| ..|+.+..++..++...++.+++.+++.+...+ .+.+
T Consensus 412 ------------------------~~~d---e~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~-- 462 (963)
T 2x19_B 412 ------------------------WSSD---EKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYS-- 462 (963)
T ss_dssp ------------------------SCHH---HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCC--
T ss_pred ------------------------CCHH---HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC--
T ss_conf ------------------------7763---89999999999999999999970689999999999999972579986--
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 35778999999999863213425510989999996105899847999999999865988765207874044499999999
Q 002697 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (891)
Q Consensus 405 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l 484 (891)
|+.++++++++|.+++++.+...++++.+++.+ ..+.++++.||.+++|++|++++++.. ..+++..+++.+
T Consensus 463 -w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~l~~------~~~~l~~vl~~l 534 (963)
T 2x19_B 463 -WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLADTVMFTIGALSEWLAD------HPVMINSVLPLV 534 (963)
T ss_dssp -HHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHHHHHHHHHHHTHHHHHH------CHHHHTTTHHHH
T ss_pred -HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHH
T ss_conf -679989999999997043822467899999999-857998589999999999988888875------889899999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHC-CCCCCHHHH
Q ss_conf 99962999899999999999999991245158699999999999700--214589999999999999826-668851146
Q 002697 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK--YQRRNLRIVYDAIGTLADAVG-FELNQPVYL 561 (891)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~--~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~ 561 (891)
+..+.+ +.|+..||.++.++++.++..+.||++.+++.+...+.+ .+...+..++++++.++...+ +... +|+
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~--~~~ 610 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL--KNL 610 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH--HHH
T ss_pred HHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH--HHH
T ss_conf 987178--4689999999999999989987766999999999986357898488999999999999629999999--999
Q ss_pred HHHHHHHHHHHHCCCCC--CCC----HHHHHHHHHHHHHHHCCC----------------------CCCCHHHHHHHHHH
Q ss_conf 52159999999729999--844----276999999999983300----------------------12331999999999
Q 002697 562 DILMPPLIAKWQQLPNS--DKD----LFPLLECFTSIAQALGAG----------------------FTQFAQPVFQRCIN 613 (891)
Q Consensus 562 ~~l~~~l~~~l~~~~~~--~~~----~~~~~~~l~~i~~~~~~~----------------------~~~~~~~i~~~l~~ 613 (891)
..+++++.+.|+....+ +.. +...++|++.++++++.. +.++.+.+++.+.+
T Consensus 611 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (963)
T 2x19_B 611 HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQK 690 (963)
T ss_dssp HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99998999999999827898778999999999999999774898643322232212477778899469999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHH
Q ss_conf 9998898742376468988335899886667999998834287520221289999997269-985799999999969987
Q 002697 614 IIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD-DASDVRQSAFALLGDLAR 692 (891)
Q Consensus 614 ~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~vr~~a~~~l~~i~~ 692 (891)
++.... + +..+++.+..+++.++..+|+.+.++++. +++.+...++. +. ...+.+++.++.
T Consensus 691 ~l~~~~-----------~-~~~v~e~~~~~l~~~~~~~~~~~~~~l~~--~~~~l~~~~~~~~~----~~~l~l~~~li~ 752 (963)
T 2x19_B 691 VLSKWL-----------N-DAQVVEAVCAIFEKSVKTLLDDFAPMVPQ--LCEMLGRMYSTIPQ----ASALDLTRQLVH 752 (963)
T ss_dssp HHHHHT-----------T-CHHHHHHHHHHHHHHHHHSSSTTGGGHHH--HHHHHHHHHHHSCC----HHHHHHHHHHHH
T ss_pred HHHHCC-----------C-CHHHHHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHHHHHCCCC----CHHHHHHHHHHH
T ss_conf 998566-----------7-46899999999999997501034240799--99999999875785----089999999999
Q ss_pred H--CHHHHHHHHHHHHHHHHH----HCC-CCCCCCCHHHHHHHHHHHHHHHHHCHHHHH--HH-HHHHHHHHHHHHCCCH
Q ss_conf 6--257668729999999998----319-999867543755599999898985011243--58-9999999999731771
Q 002697 693 V--CPVHLQARLSDFLDIAAK----QLN-TPKLKETVSVANNACWAIGELAVKARQEIS--PI-VMTVVLCLVPILKHSE 762 (891)
Q Consensus 693 ~--~~~~~~~~l~~i~~~l~~----~l~-~~~~~~~~~v~~~a~~alg~l~~~~~~~~~--~~-~~~il~~l~~~l~~~~ 762 (891)
. .+..+.+++..++..++. .+. +.. +.++++......++.++.+.+..+. +. +..++..+...+...
T Consensus 753 ~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~--~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~- 829 (963)
T 2x19_B 753 IFAHEPAHFPPIEALFLLVTSVTLTLFQQGPR--DHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFP- 829 (963)
T ss_dssp HHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTT--TCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCS-
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHCCCC-
T ss_conf 85778013789999999999999999862765--586389999999999997583987298514799999999975789-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC--C----CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 2214288869999865532067--7----657546688999996512899926778999999999961934367519999
Q 002697 763 ELNKSLIENSAITLGRLAWVCP--E----LVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFM 836 (891)
Q Consensus 763 ~~~~~~~~~~~~~l~~l~~~~~--~----~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~l~~l~~~~~~~~~~~l~~~ 836 (891)
+..+...++.++..++...+ . .+.++...++..++..+........-......+..++..++..+...+...
T Consensus 830 --~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~l~~~ 907 (963)
T 2x19_B 830 --EAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEA 907 (963)
T ss_dssp --CHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf --779999999999999851897378999999979999999999853359846778899999999997719999999998
Q ss_pred H
Q ss_conf 6
Q 002697 837 C 837 (891)
Q Consensus 837 ~ 837 (891)
+
T Consensus 908 l 908 (963)
T 2x19_B 908 L 908 (963)
T ss_dssp T
T ss_pred H
T ss_conf 4
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=382.59 Aligned_cols=516 Identities=14% Similarity=0.158 Sum_probs=353.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999997119999888999999999873399----------9077999986304788988999999999996774216
Q 002697 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFP----------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (891)
Q Consensus 15 ~~~~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p----------~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~ 84 (891)
.++.++|....|+|++ .|++|+..|.+..+.+ .....+...+. +.++.+|+.|+..|.+...
T Consensus 6 ~~l~~lL~~l~s~d~~-~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~---d~~~~vR~~A~~~L~~l~~---- 77 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKD-FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DKNGEVQNLAVKCLGPLVS---- 77 (1230)
T ss_dssp HHHHHHHHHTTCSSHH-HHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHCCCCCHH-HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHH----
T ss_conf 6999999755898785-9999999999997416657875679999999999866---9998999999999999997----
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHC-CCCHHHHHHHHHH
Q ss_conf 6996569999996855541699679999999999999612659---------63899999999721-5993477399999
Q 002697 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---------GWLELLQALVTCLD-SNDINHMEGAMDA 154 (891)
Q Consensus 85 ~~~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~---------~w~~ll~~L~~~l~-~~~~~~r~~al~~ 154 (891)
..++.....+++.++..+.+++..+|..++.+++.++...++. .|+++++.|...+. ++++.+|++++.+
T Consensus 78 ~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 58798999999999998669838899999999999999679744444117889999999999987578846799999999
Q ss_pred HHHHHHHCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHCCC
Q ss_conf 9999831511003579998876135259999986049999999999999999850152465994-999999999860799
Q 002697 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDP 233 (891)
Q Consensus 155 L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~ 233 (891)
+..+++..+..+. .+.+.+++.+++.+.++++.+|..|+.+++.++...++.+.+. ++.+++.+.. +.
T Consensus 158 l~~~~~~~~~~l~--------~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~---~~ 226 (1230)
T 1u6g_C 158 MADMLSRQGGLLV--------NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK---ND 226 (1230)
T ss_dssp HHHHHHHTCSSCT--------TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHH---TC
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC---CC
T ss_conf 9999998276778--------879999999999875996899999999999999856899999999999998616---77
Q ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87899999999999894380214676999999997531798888999999899995205774234776543369999831
Q 002697 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (891)
Q Consensus 234 ~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ll~~ 313 (891)
+..+|..++++++.++...++.+.+|++.+++.++..+.+.++++|..+++++..+++. ....+.|+++.+++.++..
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~--~~~~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR--CPKEVYPHVSTIINICLKY 304 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC--TTCCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHH
T ss_conf 55689999999999999868989988999999999986689778999999999999997--8487777689999999998
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHCCC---CH
Q ss_conf 157813356531101588989777887432234578999999----98731001033788899999999977196---40
Q 002697 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE----DDDDDIVNVWNLRKCSAAALDVLSNVFGD---EI 386 (891)
Q Consensus 314 l~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~d~~~~~~~~~r~~a~~~l~~l~~~~~~---~~ 386 (891)
+.+.+.. ..+++.++. +..+. . .+.++++ +..++++..|++|.+|..+++.++...|+ ..
T Consensus 305 l~~d~~~--~~~~d~~~~--~~~~~-------~--~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~ 371 (1230)
T 1u6g_C 305 LTYDPNY--NYDDEDEDE--NAMDA-------D--GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF 371 (1230)
T ss_dssp CCCC-------------------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HCCCCCC--CCCCCCCCC--CCCCC-------C--CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 2789988--876441101--12233-------4--465301100136664555677999999999999997466679999
Q ss_pred HHHHHHHHH------------------------------------------------------------HHHCCCCCCCH
Q ss_conf 541589999------------------------------------------------------------85503898635
Q 002697 387 LPTLMPVIQ------------------------------------------------------------AKLSASGDEAW 406 (891)
Q Consensus 387 ~~~il~~l~------------------------------------------------------------~~l~~~~~~~~ 406 (891)
++.+++.+. ..+.+.+ |
T Consensus 372 ~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~---~ 448 (1230)
T 1u6g_C 372 YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS---V 448 (1230)
T ss_dssp HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC---H
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC---H
T ss_conf 9999899998717986579999999999999972424343467520135645599999874699999999861377---8
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 77899999999986321342551098999999610589984--7999999999865988765207874044499999999
Q 002697 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP--LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (891)
Q Consensus 407 ~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l 484 (891)
..|.+++.+++.++..+++.+.++++.+++.++..+.|+++ .+|..++.+++.+.+... +....+++..+++.+
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~----~~~~~~~l~~llp~L 524 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS----PQVFHPHVQALVPPV 524 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC----GGGGHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHH
T ss_conf 7999999999999997611057779999999999974878851689999999999998389----887886799999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9996299989999999999999999124-------51586999999999997--00214589999999999999826668
Q 002697 485 LKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEIILQHLMMAF--GKYQRRNLRIVYDAIGTLADAVGFEL 555 (891)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~~~~-------~~~~~l~~i~~~l~~~l--~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (891)
+..+.|++..|+..++.++..+++.+++ .+.||++.+++.++..+ .+.+..++..++.+++.++...|+.+
T Consensus 525 ~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~ 604 (1230)
T 1u6g_C 525 VACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNL 604 (1230)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99971424689999999999999871675556532327899999999999873269988999999999999999827032
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 851146521599999997
Q 002697 556 NQPVYLDILMPPLIAKWQ 573 (891)
Q Consensus 556 ~~~~~~~~l~~~l~~~l~ 573 (891)
. ++++.+++.+...+.
T Consensus 605 ~--~~~~~~l~~L~~~l~ 620 (1230)
T 1u6g_C 605 G--SDLPNTLQIFLERLK 620 (1230)
T ss_dssp C--THHHHHHHHHHHHTT
T ss_pred H--HHHHHHHHHHHHHHC
T ss_conf 4--438899999998844
No 9
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=1.00 E-value=1 Score=375.40 Aligned_cols=724 Identities=14% Similarity=0.206 Sum_probs=463.4
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 49999999997119999888999999999873399907799998630478898899999999999677421669965699
Q 002697 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (891)
Q Consensus 13 ~~~~~~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~~~~ 92 (891)
.++++.+++...++|+++ .|++|+++|++++++|++|..+..++.. +.++.+|++|+..|++.|.++|..++++.+.
T Consensus 14 dv~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~ 90 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHRI 90 (1023)
T ss_dssp CHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred CHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHCCCCHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999998499959-9999999999987195488899999538--9988999999999999997611129999999
Q ss_pred HHHHHHHHHHHC----C-----CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCH
Q ss_conf 999968555416----9-----9679999999999999612659638999999997215993477399999999983151
Q 002697 93 YIKSELLPCLGA----A-----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (891)
Q Consensus 93 ~i~~~ll~~l~~----~-----~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (891)
.+|+.++..+.. + ...+|++++.+++.|++.+++..||++++.+.+.+++ ++.....++.+|..+.++..
T Consensus 91 ~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~ 169 (1023)
T 4hat_C 91 GIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVF 169 (1023)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999865785222231999999999999999985733232899999998569-97789999999999999998
Q ss_pred HCCCCCCC----C----CCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHC--
Q ss_conf 10035799----9----8876135259999986049-999999999999999850152465994999999999-8607--
Q 002697 164 QVLDSDVP----G----LAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLF-LLSN-- 231 (891)
Q Consensus 164 ~~~~~~~~----~----~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~-- 231 (891)
..-..+.. . .+....+.+++.+.+.+.+ .++.+...+++|++.++.+++-..... ..+++.++ ..+.
T Consensus 170 ~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~-~~ll~~l~~~~L~~~ 248 (1023)
T 4hat_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYE-TNILELLSTKFMTSP 248 (1023)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHTHHHHSH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHCC-HHHHHHHHHHHCCCH
T ss_conf 7100001599988899999998999999999998278988999999999999998489987514-449999999876987
Q ss_pred -----------------------------------------------------------CCCHHHHHHHHHHHHHHHHHC
Q ss_conf -----------------------------------------------------------998789999999999989438
Q 002697 232 -----------------------------------------------------------DPSAEVRKLVCAAFNLLIEVR 252 (891)
Q Consensus 232 -----------------------------------------------------------~~~~~vr~~~~~~l~~l~~~~ 252 (891)
+.+.+.....+..+..+.+.+
T Consensus 249 ~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~ 328 (1023)
T 4hat_C 249 DTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARN 328 (1023)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999998042578557788999999999999999973797412899986266311999999999999999999
Q ss_pred HHHHH------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 02146------76999999997531798888999999899995205----774234776543369999831157813356
Q 002697 253 PSFLE------PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYADDDES 322 (891)
Q Consensus 253 ~~~~~------~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~~~l~~li~~ll~~l~~~~~d~~ 322 (891)
...+. +.+...+..++.+....|.++...+++||..+.+. +......+|++.++++.++..|.+.+++.-
T Consensus 329 ~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~i 408 (1023)
T 4hat_C 329 RALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLV 408 (1023)
T ss_dssp GGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCE
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99986791035899999999998618992889999999999999999856578888999999999999986579820266
Q ss_pred HHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 531101-5889897778874322345789999999873100103-37888999999999771964054158999985503
Q 002697 323 LVEAEE-DESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW-NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA 400 (891)
Q Consensus 323 ~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~il~~l~~~l~~ 400 (891)
++++. +| +| +.. +|.|+...| ..| .+|..++...++++++.+++.+.+.+.+
T Consensus 409 -ve~d~~~~--------~~------------e~~-~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~~l~~ 462 (1023)
T 4hat_C 409 -VENDEGEI--------VR------------EFV-KESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLARQIDG 462 (1023)
T ss_dssp -EECTTSCE--------EE------------CSS-CCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHHHHSS
T ss_pred -CCCCCCCH--------HH------------HHC-CCHHHHHHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf -77888608--------88------------714-4558899999999----9999986068789999999999998548
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 89863577899999999986321342-55109899999961058-----9984799999999986598876520787404
Q 002697 401 SGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (891)
Q Consensus 401 ~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (891)
+ +.+|+.++++++++|++++++.+. ..++++++++.++.... |+...||..++|++|++++|+.. ..
T Consensus 463 ~-~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~------~~ 535 (1023)
T 4hat_C 463 S-EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA------HW 535 (1023)
T ss_dssp T-TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH------CH
T ss_pred C-CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC------CH
T ss_conf 8-7888999899999999976898155788899999999975410346762599999999999999999861------67
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 4499999999999629998999999999999999912451--------58699999999999700214589999999999
Q 002697 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--------APRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (891)
Q Consensus 475 ~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~--------~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (891)
.++++++..++..+.++++.|+..||+|+.++++.|+..+ .||++.++..+..++...+...+..++++++.
T Consensus 536 ~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1023)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 98999999999986169878999999999999999888761357777860699999999999884798889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC-------------CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9998266688511465215999999972999-------------984427699999999998330012331999999999
Q 002697 547 LADAVGFELNQPVYLDILMPPLIAKWQQLPN-------------SDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCIN 613 (891)
Q Consensus 547 l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-------------~~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~ 613 (891)
++...+.....+.+++.+|+++...|+.... ..+.+..+++|++.++.++|..|.|++..+++.+++
T Consensus 616 vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~ 695 (1023)
T 4hat_C 616 IISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQ 695 (1023)
T ss_dssp HHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 99858877448999999988589999999998722725412878899999999999999998268899999999999999
Q ss_pred HHHHHHHH-----HHCCCCCCCCC-CHH---HHHHHHHHHHHHHHHHHH-H--HHHHHCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 99988987-----42376468988-335---899886667999998834-2--875202212899999972699857999
Q 002697 614 IIQTQQLA-----KVDSVAAGAQY-DKE---FVVCCLDLLSGLAEGLGS-G--IESLVAQSNLRDMLLQCCMDDASDVRQ 681 (891)
Q Consensus 614 ~l~~~~~~-----~~~~~~~~~e~-d~~---~~~~al~~l~~l~~~~~~-~--~~~~~~~~~l~~~l~~~~~~~~~~vr~ 681 (891)
..+..... +.++......+ .+. ++..++.++.+.+..... . ...+++. ++..+..-.+...+..|.
T Consensus 696 ~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~--l~~~vl~dY~~~~~~~r~ 773 (1023)
T 4hat_C 696 LYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEP--LLNAVLEDYMNNVPDARD 773 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHH--HHHHHHHHHHHSCGGGCC
T ss_pred HHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHHHHHHCCHHHCC
T ss_conf 999999999999984794253168888889999999999999996279889999986788--999999888728720103
Q ss_pred -HHHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHH
Q ss_conf -99999969987625766872999999999----8319999867543755599999898985011243----58999999
Q 002697 682 -SAFALLGDLARVCPVHLQARLSDFLDIAA----KQLNTPKLKETVSVANNACWAIGELAVKARQEIS----PIVMTVVL 752 (891)
Q Consensus 682 -~a~~~l~~i~~~~~~~~~~~l~~i~~~l~----~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~----~~~~~il~ 752 (891)
..+.+...++..++..+.+.++.++..++ ..++. +..+.++.|.+-...+..+..++...+- +....+++
T Consensus 774 ~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~-~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~ 852 (1023)
T 4hat_C 774 AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK-DFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVD 852 (1023)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSS-CSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHH
T ss_conf 889999999999887741015689999999999999855-6222949899999999999997769997499999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999731771221428886999986553
Q 002697 753 CLVPILKHSEELNKSLIENSAITLGRLA 780 (891)
Q Consensus 753 ~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 780 (891)
.++-.+..+. +++-+.+...+..++
T Consensus 853 ~~~~a~~h~~---r~~~~~~l~~~~~ll 877 (1023)
T 4hat_C 853 AICWAFKHNN---RDVEVNGLQIALDLV 877 (1023)
T ss_dssp HHHHHHTCCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCC---HHHHHHHHHHHHHHH
T ss_conf 9999808995---589999999999999
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=1.00 E-value=1 Score=368.58 Aligned_cols=704 Identities=14% Similarity=0.187 Sum_probs=457.7
Q ss_pred HHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH-
Q ss_conf 499999999971199--99888999999999873399907799998630478898899999999999677421669965-
Q 002697 13 GFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS- 89 (891)
Q Consensus 13 ~~~~~~~~l~~~~s~--d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~~~~~- 89 (891)
..+++.++++.+++| |++ .|++|+++|+++++.|++|..+..++.+....++++|++|+..|++.|. .++++
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~ 78 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPI-IKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNES 78 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHH-HHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTT
T ss_pred CHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH----HCCHHH
T ss_conf 99999999999848999999-9999999999987394599999999837999989999999999999987----588201
Q ss_pred ---HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHH
Q ss_conf ---699999968555416-----99679999999999999612659638999999997215993-477399999999983
Q 002697 90 ---NQQYIKSELLPCLGA-----ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICE 160 (891)
Q Consensus 90 ---~~~~i~~~ll~~l~~-----~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~L~~~l~~~~~-~~r~~al~~L~~l~~ 160 (891)
.+..+|+.++..+.. .+..+|++++.+++.+++.+++..||++++.+.+.+++++. ......+++|..+.+
T Consensus 79 ~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 79 NLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGD 158 (980)
T ss_dssp SHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 08899999999999999705777867999999999999999868544753999999985689726899999999998589
Q ss_pred HCHHCCCCCC----------CCCC-CCCHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 1511003579----------9988-7613525999998604----99999999999999998501524659949999999
Q 002697 161 DIPQVLDSDV----------PGLA-ECPINIFLPRLLQFFQ----SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (891)
Q Consensus 161 ~~~~~~~~~~----------~~~~-~~~~~~l~~~l~~~l~----~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~ 225 (891)
++........ .+.+ +..++.+++.++..+. +.++.++..+++|++.++.+++...... +.+++.
T Consensus 159 Ev~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~ 237 (980)
T 3ibv_A 159 EIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNL 237 (980)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHC-CHHHHH
T ss_conf 9972323667887766599999998662889999999999987412889999999999999986527786503-018999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHC----------------------------------------------------H
Q ss_conf 998607998789999999999989438----------------------------------------------------0
Q 002697 226 LFLLSNDPSAEVRKLVCAAFNLLIEVR----------------------------------------------------P 253 (891)
Q Consensus 226 l~~~~~~~~~~vr~~~~~~l~~l~~~~----------------------------------------------------~ 253 (891)
++..+.+ +++|..+++||..++... +
T Consensus 238 l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~ 315 (980)
T 3ibv_A 238 LYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDP 315 (980)
T ss_dssp HHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHCCC--HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9998288--67799999999999973789566899999975799999874455568999999999999999999873586
Q ss_pred H--------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC----CC---CHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 2--------14676999999997531798888999999899995205----77---423477654336999983115781
Q 002697 254 S--------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QL---PHENLKEFLPRLVPVLLSNMIYAD 318 (891)
Q Consensus 254 ~--------~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~l~~~----~~---~~~~~~~~l~~li~~ll~~l~~~~ 318 (891)
. ...+++..+++.++.++.+.++++...+++||..+.+. +. .....++++.++++.++..|.+.+
T Consensus 316 ~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~ 395 (980)
T 3ibv_A 316 SELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDE 395 (980)
T ss_dssp C--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 55552556668999999999999996798063999999999999999872442234337899999999999998722898
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH----HHHHHH
Q ss_conf 3356531101588989777887432234578999999987310010337888999999999771964054----158999
Q 002697 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP----TLMPVI 394 (891)
Q Consensus 319 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~il~~l 394 (891)
++. |+ ++.|+||++... .+|+.....++.++...++.++. .+.+.+
T Consensus 396 d~~--~~--------------------------~~~d~ed~~~F~--e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l 445 (980)
T 3ibv_A 396 SQE--WD--------------------------DDPDSEEEAEFQ--EMRKKLKIFQDTINSIDSSLFSSYMYSAITSSL 445 (980)
T ss_dssp TCC--CC--------------------------CCSSSSTHHHHH--HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCC--CC--------------------------CCCCHHHHHHHH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 656--66--------------------------665554799999--999999999999996484988888999999999
Q ss_pred HHHHC---CCCCCCHHHHHHHHHHHHHHHHCCHHHH------HHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHH
Q ss_conf 98550---3898635778999999999863213425------5109899999961058-----99847999999999865
Q 002697 395 QAKLS---ASGDEAWKDREAAVLALGAIAEGCIKGL------YPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRF 460 (891)
Q Consensus 395 ~~~l~---~~~~~~~~~r~~a~~~l~~l~~~~~~~~------~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l 460 (891)
.+.+. +.+ |+.+|+++++++.+++++.... .+.++.+++.+...++ ++++.||.++++++|++
T Consensus 446 ~~~l~~~~~~~---W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ry 522 (980)
T 3ibv_A 446 STAATLSPENS---WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY 522 (980)
T ss_dssp HHHTTSCHHHH---HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCC---HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98715558998---799999999999987653431236675521068999999999847888899789999999999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC----C-
Q ss_conf 98876520787404449999999999--9629998999999999999999912451586999999999997002----1-
Q 002697 461 SKFIVQDIGHQNGREQFEKVLMGLLK--RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY----Q- 533 (891)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~il~~l~~--~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~----~- 533 (891)
++|+.. ..+++..+++.++. ++.+++++||.+|++++.+|++.++..+.||++.++..+..++... +
T Consensus 523 s~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~ 596 (980)
T 3ibv_A 523 ASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTD 596 (980)
T ss_dssp GGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC
T ss_pred HHHHHC------CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999851------93549999999826002669976599999999999999866874458999999999861686788875
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHCCCCC---C-C---CHHHHHHHH
Q ss_conf ----------------45899999999999998266-6885114652159999999729999---8-4---427699999
Q 002697 534 ----------------RRNLRIVYDAIGTLADAVGF-ELNQPVYLDILMPPLIAKWQQLPNS---D-K---DLFPLLECF 589 (891)
Q Consensus 534 ----------------~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~---~-~---~~~~~~~~l 589 (891)
...+..+++++|.++...+. ...+..|+..+++++++.++..-.. . . .+...+.++
T Consensus 597 ~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al 676 (980)
T 3ibv_A 597 MDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAI 676 (980)
T ss_dssp --CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 32222104542036771478899999999992789987899999999999999999998864135863888999999999
Q ss_pred HHHHHHHCCC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 9999983300---1233199999999999988987423764689883358998866679999988342875202212899
Q 002697 590 TSIAQALGAG---FTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRD 666 (891)
Q Consensus 590 ~~i~~~~~~~---~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~ 666 (891)
+.+++.+... ..|. ..++.. ..+
T Consensus 677 ~~lakgf~~~~~~~~p~-~~~f~~-----------------------------------------------------~~~ 702 (980)
T 3ibv_A 677 GNFAKGFPARGSEEVAW-LASFNK-----------------------------------------------------ASD 702 (980)
T ss_dssp HHHHHTSCSCC-CCCSH-HHHHHH-----------------------------------------------------HHH
T ss_pred HHHHCCCCCCCCCCCCH-HHHHHH-----------------------------------------------------HHH
T ss_conf 99731678646888818-999999-----------------------------------------------------999
Q ss_pred HHHHHHC--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 9999726--99857999999999699876257668729999999998319999867543755599999898985011243
Q 002697 667 MLLQCCM--DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEIS 744 (891)
Q Consensus 667 ~l~~~~~--~~~~~vr~~a~~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~ 744 (891)
.+...+. ..+..||+.+..++..++..++..+.|+++.++..+....+.. --...++.+|.++...+.++.
T Consensus 703 ~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~-------e~~~fL~l~~qli~~f~~~~~ 775 (980)
T 3ibv_A 703 EIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMN-------ELVDVLSFISQLIHIYKDNMM 775 (980)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTT-------THHHHHHHHHHHHHHTTTTSH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999988267867899999999999999755767987899999998369879-------999999999999999988899
Q ss_pred HHHHHHH----HHHHHHHCCCHH----H--HHHHHHHHHHHHHHHHHHC-CCCC-----CCCHHHHHHHHHHHCCCCCCC
Q ss_conf 5899999----999997317712----2--1428886999986553206-7765-----754668899999651289992
Q 002697 745 PIVMTVV----LCLVPILKHSEE----L--NKSLIENSAITLGRLAWVC-PELV-----SPHMEHFMQPWCIALSMIRDD 808 (891)
Q Consensus 745 ~~~~~il----~~l~~~l~~~~~----~--~~~~~~~~~~~l~~l~~~~-~~~~-----~~~~~~~l~~~~~~l~~~~~~ 808 (891)
+.+..++ .++..++..+.. . ...+++.-...+..++..+ +..+ .++++.++..++.+-....|.
T Consensus 776 ~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~ 855 (980)
T 3ibv_A 776 EITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEP 855 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----C
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99998899999999997168989947999999999999999999983786045217765678999999999982667874
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6778999999999961
Q 002697 809 TEKEDAFRGLCAMVKA 824 (891)
Q Consensus 809 ~e~~~~~~~l~~l~~~ 824 (891)
.-.+.++.-+.+++..
T Consensus 856 ~~~K~a~~~l~~~v~~ 871 (980)
T 3ibv_A 856 ATQKSSIALVSKMVSL 871 (980)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8998999999999999
Done!