BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002698
(891 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 972
Score = 1580 bits (4092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/865 (86%), Positives = 806/865 (93%)
Query: 6 LEKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSA 65
LEK+ASIDAQLRLL P KVSEDDKL+EYDALLLD+FLDILQDLHGED++E VQECYELSA
Sbjct: 12 LEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGEDLKEAVQECYELSA 71
Query: 66 EYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIKLKKGD 125
EYEGK D +KLEELG+VLTSLDPGDSIV+ K+FSHMLNLANLAEEVQIAYRRRIKLK+GD
Sbjct: 72 EYEGKHDPKKLEELGSVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAYRRRIKLKRGD 131
Query: 126 FVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKH 185
F DE +ATTESDIEET K+LV++L KSPEEVFDALKNQTVDLV TAHPTQSVRRSLLQKH
Sbjct: 132 FADEANATTESDIEETFKKLVLKLNKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKH 191
Query: 186 GRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHE 245
GRIRNCL QLYAKDITPDDKQELDEAL REIQAAFRTDEIRR+PPTPQDEMRAGMSYFHE
Sbjct: 192 GRIRNCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHE 251
Query: 246 TIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLL 305
TIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVT EVTRDVCLL
Sbjct: 252 TIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLL 311
Query: 306 ARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRDAKHYIEFWKQIPPNEPY 365
ARMMA+N+YFSQIEDLMFE+SMWRCN ELR RA+ L+R+++RD KHYIEFWKQ+PP EPY
Sbjct: 312 ARMMASNMYFSQIEDLMFEMSMWRCNSELRVRAEELYRTARRDVKHYIEFWKQVPPTEPY 371
Query: 366 RVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACGDRPI 425
RVILGDVRDKLYNTRER+R LLA+GISDIPE+ YT+VEQFLEPLELCYRSLC CGDR I
Sbjct: 372 RVILGDVRDKLYNTRERSRHLLAHGISDIPEEAVYTNVEQFLEPLELCYRSLCDCGDRVI 431
Query: 426 ADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLL 485
ADGSLLDFLRQVSTFGLSLV+LDIRQES+RHTDV+DAIT+HL IGSYREWSEEKRQEWLL
Sbjct: 432 ADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYREWSEEKRQEWLL 491
Query: 486 SELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQR 545
+EL GKRPLFGSDLPKTEE+ DVLDTF+V++ELP+D FGAYIISMAT+PSDVLAVELLQR
Sbjct: 492 AELSGKRPLFGSDLPKTEEVKDVLDTFNVLAELPSDCFGAYIISMATSPSDVLAVELLQR 551
Query: 546 ECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605
EC VK PLRVVPLFEKLADLEAAPA++ARLFSIDWYRNRI GKQEVMIGYSDSGKDAGR
Sbjct: 552 ECHVKHPLRVVPLFEKLADLEAAPAAMARLFSIDWYRNRIDGKQEVMIGYSDSGKDAGRF 611
Query: 606 SAAWQLYKTQEELVKVAKQYGVKLTMFHXXXXXXXXXXXPTHLAILSQPPDTIHGSLRVT 665
SAAWQLYK QEE++KVAK++GVKL +FH PTHLAILSQPPDTIHGSLRVT
Sbjct: 612 SAAWQLYKAQEEIIKVAKEFGVKLVIFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVT 671
Query: 666 VQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSI 725
VQGEVIEQSFGEEHLCFRTLQRF AATLEHGM+PP+SP+PEWR LMD+MAV+AT+EYRSI
Sbjct: 672 VQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDQMAVVATEEYRSI 731
Query: 726 VFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVW 785
VF+EPRFVEYFRLATPE+EYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVW
Sbjct: 732 VFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVW 791
Query: 786 LGFGAAFKHVIQKDIKNLHMLQEMYNLWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSE 845
LGFGAAFKH I+KD KNL MLQEMY WPFFRVTIDLVEMVFAKGDPGIAAL DKLLVSE
Sbjct: 792 LGFGAAFKHAIKKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSE 851
Query: 846 ELQPFGEKLRANYAETKSLLLQVCG 870
+L PFGE LRANY ETK LL++ G
Sbjct: 852 DLWPFGESLRANYEETKDYLLKIAG 876
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGE|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 990
Score = 1540 bits (3987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 726/870 (83%), Positives = 798/870 (91%)
Query: 1 MAARNLEKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQEC 60
MA RN+EK+ASIDAQLRLL P KVSEDDKLVEYDALLLD+FLDILQDLHGED++E VQ+C
Sbjct: 25 MANRNVEKLASIDAQLRLLVPGKVSEDDKLVEYDALLLDKFLDILQDLHGEDLKEAVQQC 84
Query: 61 YELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIK 120
YELSAEYEGK D +KLEELG++LTSLD GDSIV+ K+FSHMLNLANLAEE+QIAYRRRIK
Sbjct: 85 YELSAEYEGKHDPKKLEELGSLLTSLDTGDSIVIAKAFSHMLNLANLAEELQIAYRRRIK 144
Query: 121 LKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRS 180
LK GDF DE +ATTESDIEET KRLV +L KSPEEVFDALKNQTV+LV TAHPTQSVRRS
Sbjct: 145 LKSGDFADEANATTESDIEETFKRLVHKLNKSPEEVFDALKNQTVELVLTAHPTQSVRRS 204
Query: 181 LLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGM 240
LLQKHGRIRNCL QLYAKDITPDDKQELDEAL REIQAAFRTDEIRR+PPTPQDEMRAGM
Sbjct: 205 LLQKHGRIRNCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGM 264
Query: 241 SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTR 300
SYFHETIWKGVPKFLRRVDTALKNIGINER PYNAPLIQFSSWMGGDRDGNPRVT EVTR
Sbjct: 265 SYFHETIWKGVPKFLRRVDTALKNIGINERFPYNAPLIQFSSWMGGDRDGNPRVTPEVTR 324
Query: 301 DVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRDAKHYIEFWKQIP 360
DVCLLARMM +N+YFSQIEDLM E+SMWRCN ELR RA+ L+R++++D KHYIEFWK+IP
Sbjct: 325 DVCLLARMMTSNMYFSQIEDLMIEMSMWRCNSELRVRAEELYRTARKDVKHYIEFWKRIP 384
Query: 361 PNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCAC 420
PN+PYRVILGDVRDKLYNTRER+R LL +G SDIP++ YT+VEQ LEPLELCYRSLC C
Sbjct: 385 PNQPYRVILGDVRDKLYNTRERSRHLLVDGKSDIPDEAVYTNVEQLLEPLELCYRSLCDC 444
Query: 421 GDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKR 480
GD IADGSLLDFLRQVSTFGLSLV+LDIRQES+RHT+V+DAIT+HLGIGSYREWSEEKR
Sbjct: 445 GDHVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTEVLDAITQHLGIGSYREWSEEKR 504
Query: 481 QEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAV 540
QEWLL+EL GKRPL G DLPKTEE+ D LDTF V++ELP+D FGAYIISMAT+ SDVLAV
Sbjct: 505 QEWLLAELSGKRPLIGPDLPKTEEVKDCLDTFKVLAELPSDCFGAYIISMATSTSDVLAV 564
Query: 541 ELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGK 600
ELLQRE +K PLRVVPLFEKLADLEAAPA++ RLFS+DWYRNRI GKQEVMIGYSDSGK
Sbjct: 565 ELLQREYHIKHPLRVVPLFEKLADLEAAPAAMTRLFSMDWYRNRIDGKQEVMIGYSDSGK 624
Query: 601 DAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHXXXXXXXXXXXPTHLAILSQPPDTIHG 660
DAGR SAAWQLYKTQE++VK+AK++GVKL +FH PTHLA+LSQPPDTI+G
Sbjct: 625 DAGRFSAAWQLYKTQEQIVKIAKEFGVKLVIFHGRGGTVGRGGGPTHLALLSQPPDTING 684
Query: 661 SLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATK 720
SLRVTVQGEVIEQSFGEEHLCFRTLQRF AATLEHGM+PP+SP+PEWR LMD+MAV+AT+
Sbjct: 685 SLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDQMAVVATE 744
Query: 721 EYRSIVFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRF 780
EYRS+VF+EPRFVEYFRLATPE+E+GRMNIGSRPSKRKPSGGIESLRAIPWIF+WTQTRF
Sbjct: 745 EYRSVVFKEPRFVEYFRLATPELEFGRMNIGSRPSKRKPSGGIESLRAIPWIFSWTQTRF 804
Query: 781 HLPVWLGFGAAFKHVIQKDIKNLHMLQEMYNLWPFFRVTIDLVEMVFAKGDPGIAALYDK 840
HLPVWLGFGAAFKH IQKD KNL MLQEMY WPFFRVTIDLVEMVFAKG+PGIAAL DK
Sbjct: 805 HLPVWLGFGAAFKHAIQKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGNPGIAALNDK 864
Query: 841 LLVSEELQPFGEKLRANYAETKSLLLQVCG 870
LLVSE+L+PFGE LRANY ETK+ LL++ G
Sbjct: 865 LLVSEDLRPFGESLRANYEETKNYLLKIAG 894
>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
pdb|1JQO|B Chain B, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
Length = 970
Score = 1425 bits (3690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/866 (78%), Positives = 760/866 (87%), Gaps = 2/866 (0%)
Query: 7 EKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAE 66
EK SIDAQLR L P KVSEDDKL+EYDALL+DRFL+ILQDLHG +RE VQECYE+SA+
Sbjct: 11 EKHHSIDAQLRQLVPGKVSEDDKLIEYDALLVDRFLNILQDLHGPSLREFVQECYEVSAD 70
Query: 67 YEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRR-IKLKKGD 125
YEGK D+ KL ELG LT L P D+I+V S HMLNLANLAEEVQIA+RRR KLKKG
Sbjct: 71 YEGKGDTTKLGELGAKLTGLAPADAILVASSILHMLNLANLAEEVQIAHRRRNSKLKKGG 130
Query: 126 FVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKH 185
F DE SATTESDIEETLKRLV ++ KSPEEVF+ALKNQTVDLVFTAHPTQS RRSLLQK+
Sbjct: 131 FADEGSATTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRSLLQKN 190
Query: 186 GRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHE 245
RIRNCLTQL AKDIT DDKQELDEALQREIQAAFRTDEIRR+ PTPQ EMR GMSY HE
Sbjct: 191 ARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHE 250
Query: 246 TIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLL 305
T+WKGVPKFLRRVDTALKNIGINER+PYN LI+FSSWMGGDRDGNPRVT EVTRDVCLL
Sbjct: 251 TVWKGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLL 310
Query: 306 ARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSS-KRDAKHYIEFWKQIPPNEP 364
ARMMAANLY QIE+LMFELSMWRCNDELR RA+ LH SS + K+YIEFWKQIPPNEP
Sbjct: 311 ARMMAANLYIDQIEELMFELSMWRCNDELRVRAEELHSSSGSKVTKYYIEFWKQIPPNEP 370
Query: 365 YRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACGDRP 424
YRVILG VRDKLYNTRERAR LLA+G+S+I + ++T +E+FLEPLELCY+SLC CGD+
Sbjct: 371 YRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCDCGDKA 430
Query: 425 IADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWL 484
IADGSLLD LRQV TFGLSLV+LDIRQESERHTDVIDAIT HLGIGSYREW E+KRQEWL
Sbjct: 431 IADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWL 490
Query: 485 LSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQ 544
LSELRGKRPL DLP+T+EIADV+ FHV++ELP DSFG YIISMATAPSDVLAVELLQ
Sbjct: 491 LSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQ 550
Query: 545 RECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGR 604
REC V+QPL VVPLFE+LADL++APASV RLFS+DWY +RI GKQ+VM+GYSDSGKDAGR
Sbjct: 551 RECGVRQPLPVVPLFERLADLQSAPASVERLFSVDWYMDRIKGKQQVMVGYSDSGKDAGR 610
Query: 605 LSAAWQLYKTQEELVKVAKQYGVKLTMFHXXXXXXXXXXXPTHLAILSQPPDTIHGSLRV 664
LSAAWQLY+ QEE+ +VAK+YGVKLT+FH PTHLAILSQPPDTI+GS+RV
Sbjct: 611 LSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRV 670
Query: 665 TVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRS 724
TVQGEVIE FGEEHLCF+TLQRF+AATLEHGMHPPVSPKPEWR LMDEMAV+AT+EYRS
Sbjct: 671 TVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVATEEYRS 730
Query: 725 IVFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPV 784
+V +E RFVEYFR ATPE EYGRMNIGSRP+KR+P GGI +LRAIPWIF+WTQTRFHLPV
Sbjct: 731 VVVKEARFVEYFRSATPETEYGRMNIGSRPAKRRPGGGITTLRAIPWIFSWTQTRFHLPV 790
Query: 785 WLGFGAAFKHVIQKDIKNLHMLQEMYNLWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVS 844
WLG GAAFK I KD++N +L+EMYN WPFFRVT+DL+EMVFAKGDPGIA LYD+LLV+
Sbjct: 791 WLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLEMVFAKGDPGIAGLYDELLVA 850
Query: 845 EELQPFGEKLRANYAETKSLLLQVCG 870
EEL+PFG++LR Y ET+ LLLQ+ G
Sbjct: 851 EELKPFGKQLRDKYVETQQLLLQIAG 876
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 615 bits (1587), Expect = e-176, Method: Compositional matrix adjust.
Identities = 341/832 (40%), Positives = 489/832 (58%), Gaps = 36/832 (4%)
Query: 43 DILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHML 102
+ ++D GE I E V+ +LS D+ + +EL L +L + + V ++FS L
Sbjct: 21 ETIKDALGEHILERVETIRKLSKSSRAGNDANR-QELLTTLQNLSNDELLPVARAFSQFL 79
Query: 103 NLANLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKN 162
NLAN AE+ KG+ +A+ I TL++L Q + S + + A+++
Sbjct: 80 NLANTAEQYHSIS------PKGE-----AASNPEVIARTLRKLKNQPELSEDTIKKAVES 128
Query: 163 QTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRT 222
+++LV TAHPT+ RR+L+ K + CL QL KDI + +L L++ I ++ T
Sbjct: 129 LSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMRRLRQLIAQSWHT 188
Query: 223 DEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALK-NIGINERVPYNAPLIQFS 281
DEIR+ P+P DE + G + ++W+GVP +LR ++ L+ N+G ++P ++F+
Sbjct: 189 DEIRKLRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGY--KLPVEFVPVRFT 246
Query: 282 SWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGL 341
SWMGGDRDGNP VT+++TR V LL+R A +L+ I+ L+ ELSM EL A G
Sbjct: 247 SWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPELLALV-GE 305
Query: 342 HRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYT 401
++ EPYR ++ ++R +L T+ L PE + T
Sbjct: 306 EGAA-----------------EPYRYLMKNLRSRLMATQAWLEARLKGEELPKPEGL-LT 347
Query: 402 HVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVID 461
E+ EPL CY+SL ACG IA+G LLD LR+V FG+ LVR+DIRQES RHT+ +
Sbjct: 348 QNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVRIDIRQESTRHTEALG 407
Query: 462 AITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPAD 521
+T++LGIG Y WSE +Q +L+ EL KRPL + + E +VLDT VI+E P
Sbjct: 408 ELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQG 467
Query: 522 SFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWY 581
S AY+ISMA PSDVLAV LL +E + + V PLFE L DL A + +L +IDWY
Sbjct: 468 SIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETLDDLNNANDVMTQLLNIDWY 527
Query: 582 RNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHXXXXXXXX 641
R I GKQ VMIGYSDS KDAG ++A+W Y+ Q+ L+K ++ G++LT+FH
Sbjct: 528 RGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGR 587
Query: 642 XXXPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPV 701
P H A+LSQPP ++ G LRVT QGE+I +G + +L ++ A LE + PP
Sbjct: 588 GGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPP 647
Query: 702 SPKPEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSG 761
PK WR +MDE++VI+ YR V + FV YFR ATPE E G++ +GSRP+KR+P+G
Sbjct: 648 EPKESWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTG 707
Query: 762 GIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIKNLHMLQEMYNLWPFFRVTID 821
G+ESLRAIPWIFAWTQ R LP WLG G A + V++ ++ L+ M WPFF +
Sbjct: 708 GVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQS--ELEAMCRDWPFFSTRLG 765
Query: 822 LVEMVFAKGDPGIAALYDKLLVSEELQPFGEKLRANYAETKSLLLQVCGANH 873
++EMVFAK D +A YD+ LV + L P G++LR E ++L + +H
Sbjct: 766 MLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSH 817
>pdb|3EJK|A Chain A, Crystal Structure Of Dtdp Sugar Isomerase (yp_390184.1)
From Desulfovibrio Desulfuricans G20 At 1.95 A
Resolution
Length = 174
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 266 GINERVPYNAPLIQFSSWMGGDRDGNP 292
G +ER P +AP I F SW G D G P
Sbjct: 147 GESERAPQDAPFIPF-SWAGADLSGTP 172
>pdb|3E54|A Chain A, Archaeal Intron-Encoded Homing Endonuclease I-Vdi141i
Complexed With Dna
pdb|3E54|B Chain B, Archaeal Intron-Encoded Homing Endonuclease I-Vdi141i
Complexed With Dna
Length = 169
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 427 DGSLLDFLRQVSTFGLSL---------VRLD-IRQESERHTDVIDAITKHLGIGSYRE 474
+G +L F+ +F +S+ VRLD + ++++ +V++AI +HLGIG E
Sbjct: 9 EGYILGFIEAEGSFSVSIKFQRDVFGGVRLDPVFSITQKNREVLEAIKEHLGIGRIME 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,631,218
Number of Sequences: 62578
Number of extensions: 1048968
Number of successful extensions: 3057
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3045
Number of HSP's gapped (non-prelim): 14
length of query: 891
length of database: 14,973,337
effective HSP length: 107
effective length of query: 784
effective length of database: 8,277,491
effective search space: 6489552944
effective search space used: 6489552944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)