Query 002698
Match_columns 891
No_of_seqs 139 out of 832
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2352 Ppc Phosphoenolpyruvat 100.0 2E-244 5E-249 2074.1 87.9 839 27-890 5-863 (910)
2 PRK00009 phosphoenolpyruvate c 100.0 4E-227 9E-232 2024.7 93.9 843 25-890 3-865 (911)
3 PTZ00398 phosphoenolpyruvate c 100.0 4E-224 8E-229 2009.3 95.7 854 26-890 45-918 (974)
4 PF00311 PEPcase: Phosphoenolp 100.0 3E-215 7E-220 1908.6 60.1 722 162-890 1-742 (794)
5 PRK13655 phosphoenolpyruvate c 100.0 3.4E-81 7.4E-86 707.2 34.1 312 517-846 116-454 (494)
6 TIGR02751 PEPCase_arch phospho 100.0 4.5E-50 9.8E-55 454.6 30.6 286 522-838 122-434 (506)
7 PF14010 PEPcase_2: Phosphoeno 99.5 1.3E-12 2.8E-17 149.2 18.2 286 519-841 117-426 (491)
8 COG1892 Phosphoenolpyruvate ca 98.9 4.8E-08 1E-12 109.3 18.8 283 503-812 96-410 (488)
9 PF03328 HpcH_HpaI: HpcH/HpaI 96.1 0.017 3.8E-07 61.1 8.2 95 523-628 85-186 (221)
10 PRK10558 alpha-dehydro-beta-de 95.5 0.023 5E-07 61.8 6.3 71 551-632 144-216 (256)
11 TIGR03239 GarL 2-dehydro-3-deo 94.9 0.056 1.2E-06 58.7 6.9 71 551-632 137-209 (249)
12 TIGR01064 pyruv_kin pyruvate k 94.2 0.14 3.1E-06 60.5 8.5 111 512-644 177-294 (473)
13 PRK08187 pyruvate kinase; Vali 90.6 0.61 1.3E-05 55.4 7.5 111 524-646 326-438 (493)
14 PRK09206 pyruvate kinase; Prov 90.6 0.82 1.8E-05 54.0 8.5 99 512-631 178-276 (470)
15 PLN02623 pyruvate kinase 90.4 0.81 1.8E-05 55.1 8.3 87 526-631 295-381 (581)
16 PRK05826 pyruvate kinase; Prov 90.0 0.79 1.7E-05 54.2 7.7 91 523-631 187-277 (465)
17 PTZ00300 pyruvate kinase; Prov 89.3 2 4.4E-05 50.6 10.2 95 515-631 156-250 (454)
18 cd00288 Pyruvate_Kinase Pyruva 88.0 1.6 3.4E-05 51.9 8.3 88 525-631 190-277 (480)
19 TIGR01588 citE citrate lyase, 87.7 0.88 1.9E-05 50.5 5.7 97 523-629 86-189 (288)
20 PRK06247 pyruvate kinase; Prov 87.1 1.8 3.9E-05 51.3 8.1 84 526-631 190-273 (476)
21 PRK06354 pyruvate kinase; Prov 87.0 1.8 3.9E-05 52.6 8.2 87 526-631 195-282 (590)
22 TIGR02311 HpaI 2,4-dihydroxyhe 77.1 2.1 4.5E-05 46.6 3.3 69 552-631 139-209 (249)
23 PRK06739 pyruvate kinase; Vali 74.5 14 0.0003 42.4 9.1 114 512-646 171-284 (352)
24 PRK14725 pyruvate kinase; Prov 70.6 13 0.00027 45.4 7.9 108 526-646 448-555 (608)
25 PF00224 PK: Pyruvate kinase, 68.7 7.6 0.00016 44.3 5.4 89 525-632 192-280 (348)
26 PLN02765 pyruvate kinase 61.3 31 0.00068 41.6 8.7 86 527-630 225-310 (526)
27 COG2301 CitE Citrate lyase bet 59.9 6.7 0.00015 43.5 2.7 100 522-634 80-184 (283)
28 PF02585 PIG-L: GlcNAc-PI de-N 59.6 24 0.00053 33.6 6.3 55 586-650 66-120 (128)
29 PLN02461 Probable pyruvate kin 57.4 40 0.00086 40.6 8.7 87 526-631 211-297 (511)
30 cd00727 malate_synt_A Malate s 54.9 24 0.00051 42.4 6.3 97 522-628 185-302 (511)
31 PRK09255 malate synthase; Vali 54.5 26 0.00057 42.2 6.6 95 525-628 208-323 (531)
32 cd00480 malate_synt Malate syn 53.9 20 0.00043 43.1 5.5 95 525-629 187-303 (511)
33 PTZ00066 pyruvate kinase; Prov 53.6 43 0.00093 40.3 8.2 87 526-631 227-313 (513)
34 PF01373 Glyco_hydro_14: Glyco 52.2 15 0.00031 42.8 3.9 73 552-641 5-84 (402)
35 PLN02762 pyruvate kinase compl 49.5 72 0.0016 38.5 9.1 89 526-631 220-308 (509)
36 TIGR01344 malate_syn_A malate 48.0 20 0.00044 42.9 4.3 95 525-628 188-303 (511)
37 PF02526 GBP_repeat: Glycophor 46.1 16 0.00034 27.6 1.9 18 569-586 7-24 (38)
38 TIGR01417 PTS_I_fam phosphoeno 45.6 30 0.00066 42.2 5.4 102 523-637 384-506 (565)
39 COG3294 HD supefamily hydrolas 45.4 20 0.00043 38.5 3.2 92 557-654 12-128 (269)
40 PRK10128 2-keto-3-deoxy-L-rham 42.3 20 0.00044 39.5 3.0 71 551-632 144-216 (267)
41 PLN00197 beta-amylase; Provisi 38.5 28 0.0006 41.9 3.4 32 608-642 162-196 (573)
42 PLN02803 beta-amylase 38.1 29 0.00062 41.6 3.5 33 608-643 142-177 (548)
43 TIGR01418 PEP_synth phosphoeno 37.9 53 0.0011 41.7 6.0 93 526-631 633-740 (782)
44 KOG3831 Uncharacterized conser 37.7 28 0.00061 34.9 2.8 48 560-621 61-108 (196)
45 PF12897 Aminotran_MocR: Alani 37.6 20 0.00042 41.6 2.0 63 523-585 344-422 (425)
46 PRK06464 phosphoenolpyruvate s 37.3 64 0.0014 41.1 6.6 93 526-631 640-747 (795)
47 PLN02801 beta-amylase 36.3 32 0.00069 41.0 3.5 34 607-643 71-107 (517)
48 PLN02905 beta-amylase 35.1 34 0.00073 41.8 3.4 34 607-643 320-356 (702)
49 PLN02705 beta-amylase 34.1 36 0.00078 41.4 3.4 32 607-641 302-336 (681)
50 PLN02161 beta-amylase 33.6 38 0.00081 40.5 3.5 71 587-669 130-212 (531)
51 PF05524 PEP-utilisers_N: PEP- 26.7 1.2E+02 0.0026 29.0 5.2 54 817-871 52-106 (123)
52 COG4992 ArgD Ornithine/acetylo 26.6 55 0.0012 38.2 3.2 131 553-725 75-220 (404)
53 PLN02626 malate synthase 25.4 1.5E+02 0.0033 36.0 6.6 94 526-628 215-329 (551)
54 PF12133 Sars6: Open reading f 25.3 24 0.00051 29.5 0.0 43 433-480 15-57 (62)
55 TIGR01093 aroD 3-dehydroquinat 24.9 2.1E+02 0.0046 30.5 7.2 44 502-547 131-174 (228)
56 TIGR03191 benz_CoA_bzdO benzoy 23.7 5.6E+02 0.012 30.3 10.9 88 174-264 153-246 (430)
57 TIGR01766 tspaseT_teng_C trans 20.7 1.6E+02 0.0034 25.9 4.4 38 598-635 42-79 (82)
58 PLN02284 glutamine synthetase 20.2 1.5E+02 0.0032 34.1 5.1 41 586-632 195-235 (354)
No 1
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=2.4e-244 Score=2074.07 Aligned_cols=839 Identities=42% Similarity=0.705 Sum_probs=791.4
Q ss_pred chHhhHHHHHHHHHHH-HHHHhhhChhHHHHHHHHHHHHHhhhcCCChhHHHHHHHHhcCCChhhHHHHHHHHHHHhhhh
Q 002698 27 DDKLVEYDALLLDRFL-DILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLA 105 (891)
Q Consensus 27 ~~~~l~~~~~ll~~ll-~vi~e~~G~~~~~~ve~iR~la~~~~~~~~~~~~~~L~~~l~~L~~~~~~~varAFs~~f~L~ 105 (891)
.+..++.|+.+||.+| ++|+++.|+++|++||+||+++++.|.+ +.+++.+|.+.+.+|+.+++..++||||+|++|+
T Consensus 5 ~~~~lr~~v~~Lg~lLge~i~e~~g~~~~e~ve~ir~~s~~~r~~-~~~~~~~L~~~l~~Ls~~~~~~vaRaFs~f~~L~ 83 (910)
T COG2352 5 KYSALRSDVSMLGRLLGETIREAEGEAILELVETIRKLSKESRAG-DQADRQELEATLANLSNDEAIPVARAFSQFLLLA 83 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHcCCCHhhhhHHHHHHHHHhhhh
Confidence 5679999999999999 9999999999999999999999988776 4567889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCCcccCCCCCcchHHHHHHHHHHHcCCCHHHHHHHhhcCceeEeeccCCCccchhhHHHHH
Q 002698 106 NLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKH 185 (891)
Q Consensus 106 NiAEe~~r~r~~r~~~~~~~~~~~~~~~~~~sl~~~l~~L~~~~g~~~~~i~~~L~~~~i~pVlTAHPTEa~Rrtvl~~~ 185 (891)
||||+.|..|+++.+...+. ..+||..++++| ++.|++++++.+.|+++.|+|||||||||++||||++|+
T Consensus 84 NiaEd~~~~~r~~~~~~~~~--------~~~sL~~~~~~L-k~~~~~~~~v~~~l~~l~v~lVLTAHPTEv~RrTv~~~~ 154 (910)
T COG2352 84 NIAEDYHRIRRRQIHEAAGD--------SDGSLAATLKKL-KEQGLSPETVARALENLNVELVLTAHPTEVQRRTVIDKQ 154 (910)
T ss_pred hHHHHhhhHhhhhhhhccCC--------CcchHHHHHHHH-HhcCCCHHHHHHHHHhCceeEEEecCchHHHHHHHHHHH
Confidence 99999999988765544332 338999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 002698 186 GRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNI 265 (891)
Q Consensus 186 ~~I~~lL~~~~~~~~~~~e~~~~~~~L~~~i~~LW~T~~iR~~kPtv~DE~~~~l~y~~~~l~~avP~~~~~l~~al~~~ 265 (891)
++|.++|.+++...+++. ++.++++|++.|..+|||+++|..||||.||++||++||++|||++||++|++++.++.++
T Consensus 155 ~~I~~lL~~~~~~~~~~~-~~~~~~~L~~~I~~~W~TdeiR~~rptv~DEi~~gl~y~~~sl~~avP~l~r~~~~~~~~~ 233 (910)
T COG2352 155 REINRLLRKLDHADLSDE-RARIRRRLRRLIAQLWQTDEIRKLRPTVLDEIKNGLAYYENSLWQAVPKLLRELNEALQET 233 (910)
T ss_pred HHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHHhhhhHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987766665 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cCCCHHHHHHHhhh
Q 002698 266 GINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSM----WRCNDELRARADGL 341 (891)
Q Consensus 266 ~~~~~~~~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~~~~~r~~~l~~y~~~l~~L~~~LS~----~~~~~~l~~~~~~~ 341 (891)
++ ...|..++|++|||||||||||||||||+||++++..+|+++++.|..+|.+|+.+||+ ++||++|.++++.
T Consensus 234 ~~-~~~~~~~~p~~~gSWiGGDRDGNPfVTae~tr~~~~~~r~~~~~~Yl~~i~~L~~eLS~S~~~~~vs~el~ala~~- 311 (910)
T COG2352 234 FG-ELLPVEAVPLRFGSWIGGDRDGNPFVTAETTRQALLLQRWKALDLYLKEIQKLYSELSMSTRLVKVSPELLALAGE- 311 (910)
T ss_pred cc-cccCCCCCccccccCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcccCCHHHHHHHhc-
Confidence 64 34566678999999999999999999999999999999999999999999999999999 6899999998776
Q ss_pred hhcchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCChHHhhhHHHHHHHHHHhcC
Q 002698 342 HRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACG 421 (891)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~EpyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~SL~~~~ 421 (891)
+++...+ +.+||||++|.+|++||.+|...+.+...... ......+|.+++||++||..|++||.+||
T Consensus 312 ---~~d~~~~--------r~~EPYR~al~~i~~rL~~T~~~l~~~~~~~~-~~~~~~~y~~~~el~~dL~~i~~SL~~~G 379 (910)
T COG2352 312 ---SQDQSIR--------RADEPYRRALKYIRSRLMATQAYLDGLLAGEE-GVGPEPPYTSPEELLEDLYAIYQSLHACG 379 (910)
T ss_pred ---Cccccch--------hccccHHHHHHHHHHHHHHHHHHHhccccccc-cCCCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 3333333 37899999999999999999987655432111 22234589999999999999999999999
Q ss_pred CccchhhHHHHHHHHHHhcCCccccccccccchHHHHHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Q 002698 422 DRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIG-SYREWSEEKRQEWLLSELRGKRPLFGSDLP 500 (891)
Q Consensus 422 ~~~~a~~~l~~li~~v~~FGfhla~LDiRQ~S~~H~~a~~ei~~~~g~~-~y~~l~E~~r~~~L~~eL~~~rpl~~~~~~ 500 (891)
++.+|+|.|.+++++|++|||||++|||||||++|++||+||++++|++ +|.+|+|++|++||.+||+++|||+++.++
T Consensus 380 ~~~la~g~L~~ll~~v~~FGf~L~~LDiRQ~S~~h~~avaEL~~~ag~~~dY~~lsE~~K~~~L~~EL~s~RPL~p~~~~ 459 (910)
T COG2352 380 MEILADGRLLDLLRRVEVFGFHLVSLDIRQESTRHEEAVAELLRYAGLGADYSSLSEEDKQAFLLRELSSRRPLLPPFWQ 459 (910)
T ss_pred CceeccchHHHHHHHHHhcCceeeccccccccchHHHHHHHHHHHccCCCChhhcCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhC----CCcchhHHHhhcCCChhhHHHHHHHHHHcCCC----CCCccccccCChHHHhchHHHH
Q 002698 501 KTEEIADVLDTFHVISEL----PADSFGAYIISMATAPSDVLAVELLQRECRVK----QPLRVVPLFEKLADLEAAPASV 572 (891)
Q Consensus 501 ~s~~~~e~l~~f~~i~~~----~~~a~~~yIISmt~s~sDvL~vl~L~k~~Gl~----~~l~VvPLFETi~DL~~a~~il 572 (891)
+|+.++++|+||+++++. |+++|++||||||+++||||||++|+||+|+. .+++|||||||||||+||+.||
T Consensus 460 ~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm 539 (910)
T COG2352 460 PSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVM 539 (910)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHHH
Confidence 999999999999999975 56789999999999999999999999999998 7999999999999999999999
Q ss_pred HHHhccHHHHhhc---CCeeEEEEeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCchhhh
Q 002698 573 ARLFSIDWYRNRI---SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLA 649 (891)
Q Consensus 573 ~~ll~~p~yr~~l---~~~qeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGSvgRGGGPt~~a 649 (891)
++||+.|+||..| +|.||||||||||||||||++|||++|+||+.|+++|+|+||+++|||||||||||||||+|.|
T Consensus 540 ~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~LrlFHGRGGtVGRGGGPa~~A 619 (910)
T COG2352 540 TQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRLFHGRGGSVGRGGGPAYAA 619 (910)
T ss_pred HHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEEEccCCCCCCCCCchHHHH
Confidence 9999999999999 3699999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhhc
Q 002698 650 ILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPP-VSPKPEWRALMDEMAVIATKEYRSIVFQ 728 (891)
Q Consensus 650 i~aqP~gs~~g~irvTeQGEvI~~kyg~~~~A~r~Le~~~~a~l~~s~~~~-~~~~~~~~~~m~~ls~~s~~~Yr~lv~~ 728 (891)
|+||||||++|+||+|||||||..|||+|++|.||||.+++|+|++++.|+ +.|+++|+.+||+||+.||++||+|||+
T Consensus 620 ILsQP~gsv~g~iRiTEQGE~I~~Kyg~p~~A~~nLe~l~sAvLeAsllp~~~dp~~~~~~iMd~ls~~S~~~YR~lV~~ 699 (910)
T COG2352 620 ILSQPPGSVKGRIRITEQGEMIAFKYGLPEVARRNLETLVSAVLEASLLPPKPDPKESWRAIMDELSDISCDAYRGLVRE 699 (910)
T ss_pred HhcCCCcccCCceEeehhHHHHHHhhCChHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999876 6777889999999999999999999999
Q ss_pred CCchhhHHHhhCchhHhhhCCCCCCCCccCCC-CCCCCccccchhhhhhhhhccccchhhHHHHHHHHHHhCCCcHHHHH
Q 002698 729 EPRFVEYFRLATPEMEYGRMNIGSRPSKRKPS-GGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIKNLHMLQ 807 (891)
Q Consensus 729 ~p~F~~yF~~aTPi~ei~~l~IGSRPa~R~~~-~~l~dLRAIPWVFaWtQ~R~~lP~WyGvGsAl~~~~~~~~~~~~~L~ 807 (891)
+|+|++||+++|||+||++||||||||||+.. ++++|||||||||||||+|+|||||||+|+|++++++++|++.+.|+
T Consensus 700 ~pdFvdyF~~~TPi~EIs~LniGSRPA~Rk~~~~~ie~LRAIPWVFSWsQnR~mLP~WyG~Gsal~~~i~~g~~~~~~L~ 779 (910)
T COG2352 700 NPDFVDYFRQATPIQEISKLNIGSRPASRKPTTGGIESLRAIPWVFSWTQNRLMLPAWYGVGSALQRFIEEGPENLALLR 779 (910)
T ss_pred CCcHHHHHHhcCcHHHHhcCCCCCCCcCCCCCCCccccccccchhhhhhhhhhcchhhhhhhHHHHHHHHcCcchHHHHH
Confidence 99999999999999999999999999999976 56999999999999999999999999999999999999987899999
Q ss_pred HHHhhChhHHHHHHHHHHHHHhccHHHHHHHHhhcCCccch-HHHHHHHHHHHHHHHHHHHHhCCcccccCCchHHHHHH
Q 002698 808 EMYNLWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSEELQ-PFGEKLRANYAETKSLLLQVCGANHWSDFRKVIIVISK 886 (891)
Q Consensus 808 ~my~~wpfF~t~idnvem~LaKaD~~Ia~~Ya~l~~d~~~~-~i~~~i~~E~~~T~~~vl~itg~~~Ll~~~p~l~~si~ 886 (891)
+||++||||+++|+||+|+|+|+||.||.+|+++++|+++. ++|++|++||++|+++++.|+|+++||+++|+|++||.
T Consensus 780 ~m~~~WPFF~s~Lsn~emvlaKsd~~iA~~Y~qll~d~~~~~~lf~~i~~e~~~T~~~vl~I~~~~~LL~d~p~La~Si~ 859 (910)
T COG2352 780 DMYQNWPFFSSRLSNMEMVLAKSDLWLAEHYAQLLVDPELGERLFDQIREEYQLTRKVVLAITGHDELLADNPWLAESIA 859 (910)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999965 99999999999999999999999999999999999999
Q ss_pred hhhc
Q 002698 887 LRYK 890 (891)
Q Consensus 887 ~r~~ 890 (891)
+||-
T Consensus 860 lRn~ 863 (910)
T COG2352 860 LRNP 863 (910)
T ss_pred Hhcc
Confidence 9985
No 2
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=100.00 E-value=4.1e-227 Score=2024.75 Aligned_cols=843 Identities=43% Similarity=0.725 Sum_probs=779.3
Q ss_pred CCchHhhHHHHHHHHHHH-HHHHhhhChhHHHHHHHHHHHHHhhhcCCChhHHHHHHHHhcCCChhhHHHHHHHHHHHhh
Q 002698 25 SEDDKLVEYDALLLDRFL-DILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLN 103 (891)
Q Consensus 25 ~~~~~~l~~~~~ll~~ll-~vi~e~~G~~~~~~ve~iR~la~~~~~~~~~~~~~~L~~~l~~L~~~~~~~varAFs~~f~ 103 (891)
...+.+|+.|+++||.+| +||++++|+++|++||+||.+++..+.+. +...++|.+.+++|+++++..|+||||+||+
T Consensus 3 ~~~~~~Lr~dv~~Lg~lLg~vi~~~~g~~~~~~ve~ir~~~~~~r~~~-~~~~~~L~~~l~~L~~~e~~~v~raFs~~~~ 81 (911)
T PRK00009 3 NEKDAPLREDVRLLGRLLGDTIREQEGDEVFDLVETIRKLSKSSRRGD-DAAREELLKLLKNLSNDELLPVARAFSQFLN 81 (911)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhcccc-chhHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 356778999999999998 99999999999999999999999876553 3445689999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHhhcCCCcccCCCCCcchHHHHHHHHHHHcCCCHHHHHHHhhcCceeEeeccCCCccchhhHHH
Q 002698 104 LANLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQ 183 (891)
Q Consensus 104 L~NiAEe~~r~r~~r~~~~~~~~~~~~~~~~~~sl~~~l~~L~~~~g~~~~~i~~~L~~~~i~pVlTAHPTEa~Rrtvl~ 183 (891)
|+||||++|++|++|.+...+ .+..+||..++.+| +++|++++++++.|+++.|+|||||||||++|||||+
T Consensus 82 L~NiAEe~~~~r~~r~~~~~~-------~~~~~sl~~~~~~l-~~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~RrtvL~ 153 (911)
T PRK00009 82 LANIAEDYHHIRRRREHASGS-------QPQPGSLAETLRRL-KAAGVSPEELARALEELDIEPVLTAHPTEVQRRTLLD 153 (911)
T ss_pred HHHHHHHHHHHHHHHHhhccC-------CCCCCcHHHHHHHH-HHcCCCHHHHHHHHhhCcceeeeecCCcccchHHHHH
Confidence 999999999999888765432 14679999999999 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002698 184 KHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALK 263 (891)
Q Consensus 184 ~~~~I~~lL~~~~~~~~~~~e~~~~~~~L~~~i~~LW~T~~iR~~kPtv~DE~~~~l~y~~~~l~~avP~~~~~l~~al~ 263 (891)
+|++|+.+|.++++..++|.|+++++++|+++|+.||||+++|++||||.||++||++||+++||++||.+|+++++++.
T Consensus 154 ~~~~I~~~L~~~d~~~~t~~e~~~~~~~l~~~i~~LW~T~eiR~~KPtv~DE~~~gl~y~~~~l~~aiP~~~~~l~~al~ 233 (911)
T PRK00009 154 KQREIAALLRQLDDVDLTPRERAKIERRLRRLIAQLWQTDEIRQFRPTVVDEIKNGLAYYENSLWQAVPKLYRELEEALE 233 (911)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhCcchhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cCCCHHHHHHHh
Q 002698 264 NIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSM----WRCNDELRARAD 339 (891)
Q Consensus 264 ~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~~~~~r~~~l~~y~~~l~~L~~~LS~----~~~~~~l~~~~~ 339 (891)
.+++ ...|..+++|+||||||||||||||||++||++|+.++|+.++++|++++++|.++||+ .+||+++.++.+
T Consensus 234 ~~~~-~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~L~~~LS~S~~~~~~s~~l~~l~~ 312 (911)
T PRK00009 234 EHFG-LQLPLDAAPLRFGSWIGGDRDGNPNVTAEVTREVLLLQRWVALDLYLKELHALGSELSMSTRLVEVSPELRALAG 312 (911)
T ss_pred HhcC-ccCCCCCceeeeccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCHHHHHHhh
Confidence 8752 33455668999999999999999999999999999999999999999999999999999 579999988554
Q ss_pred hhhhcchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCChHHhhhHHHHHHHHHHh
Q 002698 340 GLHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCA 419 (891)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~EpyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~SL~~ 419 (891)
... ... ..+.+||||++|..|+.||.+|...+..... +....+...+|.+++||++||..|++||++
T Consensus 313 ~~~----~~~--------~~~~~EPYR~~l~~i~~rL~~t~~~~~~~~~-~~~~~~~~~~Y~~~~ell~dL~~i~~SL~~ 379 (911)
T PRK00009 313 ASP----DQS--------PHRRDEPYRRALKGIRARLAATADWLEARLA-GEEAPPPADPYASAEELLADLDLIYQSLRA 379 (911)
T ss_pred ccc----ccc--------cccCCCcHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCcccccCCCHHHHHHHHHHHHHHHHh
Confidence 421 111 1247899999999999999999876643221 111111234799999999999999999999
Q ss_pred cCCccchhhHHHHHHHHHHhcCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Q 002698 420 CGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDL 499 (891)
Q Consensus 420 ~~~~~~a~~~l~~li~~v~~FGfhla~LDiRQ~S~~H~~a~~ei~~~~g~~~y~~l~E~~r~~~L~~eL~~~rpl~~~~~ 499 (891)
+|+..+|+|.|.+||++|++||||||+|||||||++|++|++||++++|+++|.+|||++|+++|.++|.++||+.++..
T Consensus 380 ~~~~~~A~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~ai~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~ 459 (911)
T PRK00009 380 CGMGILANGRLLDLLRRVEVFGFHLARLDIRQESSRHEDAVAELTRYLGLGDYASLSEAEKQAFLLRELNSRRPLIPPNW 459 (911)
T ss_pred CCCccchhhHHHHHHHHHHhhCcccCCcccccChHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhCCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999997799999999999999999999999998888
Q ss_pred CCCHHHHHHHHH----HHHHHhCCCcchhHHHhhcCCChhhHHHHHHHHHHcCCCC------CCccccccCChHHHhchH
Q 002698 500 PKTEEIADVLDT----FHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQ------PLRVVPLFEKLADLEAAP 569 (891)
Q Consensus 500 ~~s~~~~e~l~~----f~~i~~~~~~a~~~yIISmt~s~sDvL~vl~L~k~~Gl~~------~l~VvPLFETi~DL~~a~ 569 (891)
.+|+++.+++++ +++++.+++++|++||||||+++||||+|++|+|++|+.. +|+|||||||++||+||+
T Consensus 460 ~~s~~~~~~l~~~~~~~~~~~~~~~~~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~ 539 (911)
T PRK00009 460 EYSELTSKELAEFLAARRLIAEFGAEAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAA 539 (911)
T ss_pred ccChhhHHHHHHHHHHHHHHHHhCchhhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHH
Confidence 776665555555 4555567899999999999999999999999999999853 899999999999999999
Q ss_pred HHHHHHhccHHHHhhc---CCeeEEEEeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch
Q 002698 570 ASVARLFSIDWYRNRI---SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT 646 (891)
Q Consensus 570 ~il~~ll~~p~yr~~l---~~~qeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGSvgRGGGPt 646 (891)
+||++||++|+||+|+ ++.|||||||||||||||+++|+|+||+||++|+++|+++||+++|||||||||||||||+
T Consensus 540 ~il~~l~~~p~yr~~l~~~~~~qeVMlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~FhGrGGsv~RGGgp~ 619 (911)
T PRK00009 540 DVMRQLLSLPWYRGLIAGRGNLQEVMLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLFHGRGGTVGRGGGPA 619 (911)
T ss_pred HHHHHHHcChHHHHHHhcCCCeEEEEeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCChH
Confidence 9999999999999999 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002698 647 HLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIV 726 (891)
Q Consensus 647 ~~ai~aqP~gs~~g~irvTeQGEvI~~kyg~~~~A~r~Le~~~~a~l~~s~~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv 726 (891)
|+||+|||+||++|+||+|||||||++|||+|.+|.+|||++++|++++++.+++++.++|+++|++||+.|+++||++|
T Consensus 620 ~~ai~~qp~g~~~g~iR~TeQGEvI~~kY~~~~~a~~nLE~~~~a~l~~~~~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv 699 (911)
T PRK00009 620 YAAILSQPPGSVKGRIRVTEQGEVIRSKYGLPEVARRNLELLTAATLEASLLPPPEPKPEWREIMDELSDRSCKAYRGLV 699 (911)
T ss_pred HHHHHhCCCccccCceEEEeechhHHHhcCChHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876555678899999999999999999999
Q ss_pred hcCCchhhHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhhccccchhhHHHHHHHHHHhC-CCcHHH
Q 002698 727 FQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKD-IKNLHM 805 (891)
Q Consensus 727 ~~~p~F~~yF~~aTPi~ei~~l~IGSRPa~R~~~~~l~dLRAIPWVFaWtQ~R~~lP~WyGvGsAl~~~~~~~-~~~~~~ 805 (891)
+++|+|++||+++||+.+|+.|||||||+||+++++++|||||||||||+|+|+|+|||||+|+||+++++++ +++++.
T Consensus 700 ~~~~~F~~yf~~~tP~~e~~~l~IGSRP~~R~~~~~i~~lRAIPwvfsW~Q~R~~lP~w~G~Gsal~~~~~~~~~~~~~~ 779 (911)
T PRK00009 700 RENPDFVDYFRAATPIQEIGKLNIGSRPASRKPTGGIESLRAIPWVFSWSQNRLMLPGWYGVGSALQAAIDDEPPGRLAL 779 (911)
T ss_pred hcCCCHHHHHHHhChHHHHHhccccCCCCCCCCCCCccccccchhhhhHHhhhccchHHhhHHHHHHHHHhccCcchHHH
Confidence 9999999999999999999999999999999877899999999999999999999999999999999998763 246899
Q ss_pred HHHHHhhChhHHHHHHHHHHHHHhccHHHHHHHHhhcCCccchH-HHHHHHHHHHHHHHHHHHHhCCcccccCCchHHHH
Q 002698 806 LQEMYNLWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSEELQP-FGEKLRANYAETKSLLLQVCGANHWSDFRKVIIVI 884 (891)
Q Consensus 806 L~~my~~wpfF~t~idnvem~LaKaD~~Ia~~Ya~l~~d~~~~~-i~~~i~~E~~~T~~~vl~itg~~~Ll~~~p~l~~s 884 (891)
||+||++||||+++|||++|+|+||||.||++|+++|+|++++. ||++|++||++|+++|++|||+++||+++|+|++|
T Consensus 780 L~~my~~WPFF~~~ldn~em~LaKaD~~Ia~~Y~~ll~d~~~~~~i~~~I~~E~~~T~~~ll~itg~~~Ll~~~p~l~~s 859 (911)
T PRK00009 780 LREMYQDWPFFRTLLSNLEMVLAKADLNIAERYAQLLVDKELRPRLFERIRDELELTIKVVLAITGQDELLADNPWLARS 859 (911)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccChHHHHH
Confidence 99999999999999999999999999999999999999999884 99999999999999999999999999999999999
Q ss_pred HHhhhc
Q 002698 885 SKLRYK 890 (891)
Q Consensus 885 i~~r~~ 890 (891)
|++|+.
T Consensus 860 i~~R~p 865 (911)
T PRK00009 860 IRLRNP 865 (911)
T ss_pred HHHHHH
Confidence 999974
No 3
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=100.00 E-value=3.7e-224 Score=2009.35 Aligned_cols=854 Identities=43% Similarity=0.720 Sum_probs=788.5
Q ss_pred CchHhhHHHHHHHHHHH-HHHHhhhChhHHHHHHHHHHHHHhhhcCCChhHHHHHHHHhcCCChhhHHHHHHHHHHHhhh
Q 002698 26 EDDKLVEYDALLLDRFL-DILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNL 104 (891)
Q Consensus 26 ~~~~~l~~~~~ll~~ll-~vi~e~~G~~~~~~ve~iR~la~~~~~~~~~~~~~~L~~~l~~L~~~~~~~varAFs~~f~L 104 (891)
..+.+|+.|+++||.++ +||+++.|+++|++||++|.+++..+++.++...++|.+.+++|+++++..|+||||+||+|
T Consensus 45 ~~~~~L~~dv~~Lg~lLg~vl~~~~g~~~~~~ve~ir~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~v~raFs~~~~L 124 (974)
T PTZ00398 45 DFQEPLDLDIKALEFLLFDLVKDHWPEDGFEIIFDILKLSMKFSENEDSESFNTLWKKIYNLDSGYLGLVVRLFNHMCVL 124 (974)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45568999999999998 99999999999999999999999877655555678999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHhhcCCCcccCCCCCcchHHHHHHHHHHHcCCCHHHHHHHhhcCceeEeeccCCCccchhhHHHH
Q 002698 105 ANLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQK 184 (891)
Q Consensus 105 ~NiAEe~~r~r~~r~~~~~~~~~~~~~~~~~~sl~~~l~~L~~~~g~~~~~i~~~L~~~~i~pVlTAHPTEa~Rrtvl~~ 184 (891)
+|+||++|++|++|..++.+... ..+..|||..++++| +++|+++++|+++|+++.|+|||||||||++|||||+|
T Consensus 125 ~NiAE~~~~~r~~r~~~~~~~~~---~~~~~~sl~~~l~~L-~~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~RrTvL~~ 200 (974)
T PTZ00398 125 SNYAEWAHRIRRRRAFERSFTDN---DRIFTESLKNTIEML-LQAGFDKEEIYKQLCNQEIDLVLTAHPTQAQRISVLKN 200 (974)
T ss_pred HHHHHHHHHHHHHHHhhcccccc---CCCccCcHHHHHHHH-HHcCCCHHHHHHHHhcCceeeeeccCCccccHHHHHHH
Confidence 99999999999887665421110 124689999999999 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 002698 185 HGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKN 264 (891)
Q Consensus 185 ~~~I~~lL~~~~~~~~~~~e~~~~~~~L~~~i~~LW~T~~iR~~kPtv~DE~~~~l~y~~~~l~~avP~~~~~l~~al~~ 264 (891)
|++|+.+|.++++..++|.|++++.++|+++|+.||+|+++|++||||.||++||++||+++||++||.+|+++++++.+
T Consensus 201 ~~~I~~~L~~ld~~~~t~~e~~~~~~~L~~~I~~LW~TdeiR~~KPtv~DE~~~gl~y~~~sl~~aiP~~~~~l~~al~~ 280 (974)
T PTZ00398 201 CQRLGELLLSLDNTDLTPFEIKDLKKNLQRLLAMLWKTDTIRRAKPTPLDEAQNLINTIENTIFDALPNFIRYIDNVLYE 280 (974)
T ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHhCcchhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHhhhhh-
Q 002698 265 IGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHR- 343 (891)
Q Consensus 265 ~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~~~~~r~~~l~~y~~~l~~L~~~LS~~~~~~~l~~~~~~~~~- 343 (891)
++. ...|..+++|+|||||||||||||||||+||++|+.++|+.++++|++++++|+++||++.|++++.++++...+
T Consensus 281 ~~~-~~~~~~~~~i~fGSWiGGDRDGNP~VTaevT~~~l~~~r~~al~~Y~~~l~~L~~~LS~s~~~~~L~~~~~~~~~~ 359 (974)
T PTZ00398 281 YNL-DPLPPTKKLFTFSSWVGGDRDGNPFVTAEVTRQVVYFNRIRACELFIHMIEKLMYDLPLKSCTEKLKEYVDNLPDE 359 (974)
T ss_pred hcC-CCCCCCCCceeccCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhhhhhh
Confidence 763 335556789999999999999999999999999999999999999999999999999999999999986655321
Q ss_pred cc--------hhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--CCcCCCCCChHHhhhHHHHH
Q 002698 344 SS--------KRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISD--IPEDIAYTHVEQFLEPLELC 413 (891)
Q Consensus 344 ~~--------~~~~~~~~~~~~~~~~~EpyR~~l~~i~~rL~~t~~~~~~~~~~~~~~--~~~~~~y~~~~ell~dL~~i 413 (891)
.. +...+.. .... .++||||++|..|++||.+|...+...+...... ......|.+++||++||..|
T Consensus 360 ~~~~~~~~~~~~~~~~~-~~~~--~~~EPYR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~~~Y~~~~ell~dL~~i 436 (974)
T PTZ00398 360 ISFYITDKDATYLLREF-MGFI--PEKELYRRALLHVRAKLIATRDYYKDLISNHSVDPEFRRELAYHSTDEILEPLIEC 436 (974)
T ss_pred hccccccchhhhhhhhh-cccC--CCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHH
Confidence 00 0000000 0011 1589999999999999999998764432210000 01234699999999999999
Q ss_pred HHHHHhcCCccchhhHHHHHHHHHHhcCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhcCCCC
Q 002698 414 YRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRP 493 (891)
Q Consensus 414 ~~SL~~~~~~~~a~~~l~~li~~v~~FGfhla~LDiRQ~S~~H~~a~~ei~~~~g~~~y~~l~E~~r~~~L~~eL~~~rp 493 (891)
++||++||+..+|+|.|.+||++|++||||||+|||||||++|++||+||++++|+++|.+|||++|++||.++|.++||
T Consensus 437 ~~SL~~~g~~~lA~g~L~dlir~v~~FGfhLa~LDIRQ~S~~H~~ai~el~~~~g~~~Y~~l~E~er~~~L~~eL~~~rp 516 (974)
T PTZ00398 437 YNSLEDVGNTILARGRLLDVIRQVKTFGLHLMKLDIRQESSKHEKAMDEICEYLGLGNYSELSEEEKQDFLLDILPSKRP 516 (974)
T ss_pred HHHHHHCCChhhHhhHHHHHHHHHHHhCccccccccccCcHHHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCcchhHHHhhcCCChhhHHHHHHHHHHcCCC---CCCccccccCChHHHhchHH
Q 002698 494 LFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVK---QPLRVVPLFEKLADLEAAPA 570 (891)
Q Consensus 494 l~~~~~~~s~~~~e~l~~f~~i~~~~~~a~~~yIISmt~s~sDvL~vl~L~k~~Gl~---~~l~VvPLFETi~DL~~a~~ 570 (891)
++++..++|++++++|+||++++++++++||+||||||+++||||+|++|+|++|+. ++|+|||||||++||+||+.
T Consensus 517 l~~~~~~~s~~~~evl~~f~~ia~~~~~alg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~ 596 (974)
T PTZ00398 517 LIPHDLNWPSEVNEVLDTFKVCSELENEALGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSK 596 (974)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHccccccceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999999998863 68999999999999999999
Q ss_pred HHHHHhccHHHHhhc----CCeeEEEEeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch
Q 002698 571 SVARLFSIDWYRNRI----SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT 646 (891)
Q Consensus 571 il~~ll~~p~yr~~l----~~~qeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGSvgRGGGPt 646 (891)
||++||++|+||+|+ +++|||||||||||||||+++|+|+||+||++|+++|+++||+++|||||||||||||||+
T Consensus 597 il~~ll~~p~Yr~~l~~~~~~~qeVMlGYSDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~ 676 (974)
T PTZ00398 597 TLEELFSNPWYLKHLKTVDNGIQEIMIGYSDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQ 676 (974)
T ss_pred HHHHHHcCHHHHHHHhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCCh
Confidence 999999999999999 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHHHHHHHHHHh
Q 002698 647 HLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSP-KPEWRALMDEMAVIATKEYRSI 725 (891)
Q Consensus 647 ~~ai~aqP~gs~~g~irvTeQGEvI~~kyg~~~~A~r~Le~~~~a~l~~s~~~~~~~-~~~~~~~m~~ls~~s~~~Yr~l 725 (891)
|+||+|||+||++|.+|+|||||||++|||+|++|.+|||++++|++++++.+++.+ .++|+++|++||+.|+++||++
T Consensus 677 ~~aIlsqp~~~~~g~ir~TeQGE~i~~ky~~~~~a~~~le~~~aA~l~~~~~~~~~~~~~~~~~~m~~la~~s~~~Yr~l 756 (974)
T PTZ00398 677 HLAILSQPPNTIKSYLRITIQGETITQNFGLKGICLRTWELYMSALLKCSLLADPIPVKQEWRELMDEMSEISMKEYRKV 756 (974)
T ss_pred HHHHhcCCCccccCeeEEeeechhhHHhcCChHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998755545 6789999999999999999999
Q ss_pred hhcCCchhhHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhhccccchhhHHHHHHHHHHhCCCcHHH
Q 002698 726 VFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIKNLHM 805 (891)
Q Consensus 726 v~~~p~F~~yF~~aTPi~ei~~l~IGSRPa~R~~~~~l~dLRAIPWVFaWtQ~R~~lP~WyGvGsAl~~~~~~~~~~~~~ 805 (891)
|+++|+|++||.++||+.+|+.|||||||+||+ ..+++|||||||||||+|+|++||+|||+|+||+.+++++ +++.
T Consensus 757 v~~~~~fv~yf~~atP~~e~~~L~iGSRP~~R~-~~~i~~LRAIPwvfaW~Q~r~~LP~w~G~G~al~~~~~~~--~~~~ 833 (974)
T PTZ00398 757 VRENPDFVPYFRSVTPEKEIGELNIGSRPSKRK-EGGIETLRAIPWVFAWTQNRLHLPVWLGLEDALEELKKKG--KLNL 833 (974)
T ss_pred HhcCCCHHHHHHHhChHHHHHhcccCCCCCCCC-CCCCCcccccchhhHHHhccCCchHHHhHHHHHHHHHhcC--hHHH
Confidence 999999999999999999999999999999997 5789999999999999999999999999999999998765 5899
Q ss_pred HHHHHhhChhHHHHHHHHHHHHHhccHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhCCcccccCCchHHHHH
Q 002698 806 LQEMYNLWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSEELQPFGEKLRANYAETKSLLLQVCGANHWSDFRKVIIVIS 885 (891)
Q Consensus 806 L~~my~~wpfF~t~idnvem~LaKaD~~Ia~~Ya~l~~d~~~~~i~~~i~~E~~~T~~~vl~itg~~~Ll~~~p~l~~si 885 (891)
|++||++||||+++|||++|+|+||||.||++|+++++|++++.||++|++||++|+++|++|||+++||+++|++++||
T Consensus 834 L~~m~~~wpff~~~l~~~~m~LaKaDl~IA~~Y~~~l~~~~~~~i~~~I~~E~~~T~~~ll~itg~~~Ll~~~p~l~~Si 913 (974)
T PTZ00398 834 IADMYKNWPFCKSFFNLVSMVLLKTDVQITEEYNKMLVPEQLQYIGNLLRNKLKKTTNLILLVTKEKQLLDNDIVTKRSI 913 (974)
T ss_pred HHHHHHhCHHHHHHHhHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccChHHHHHH
Confidence 99999999999999999999999999999999998888988889999999999999999999999999999999999999
Q ss_pred Hhhhc
Q 002698 886 KLRYK 890 (891)
Q Consensus 886 ~~r~~ 890 (891)
++|+.
T Consensus 914 ~~R~p 918 (974)
T PTZ00398 914 LLRFK 918 (974)
T ss_pred HHHHH
Confidence 99985
No 4
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=100.00 E-value=3.3e-215 Score=1908.58 Aligned_cols=722 Identities=47% Similarity=0.768 Sum_probs=601.6
Q ss_pred cCceeEeeccCCCccchhhHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHH
Q 002698 162 NQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMS 241 (891)
Q Consensus 162 ~~~i~pVlTAHPTEa~Rrtvl~~~~~I~~lL~~~~~~~~~~~e~~~~~~~L~~~i~~LW~T~~iR~~kPtv~DE~~~~l~ 241 (891)
++.|+|||||||||++|||||++|++|+.+|.++++..++|.|+.+++++|+++|+.||||+++|.+||||.||++||++
T Consensus 1 ~l~i~pVlTAHPTEa~RrtvL~~~~~I~~lL~~~d~~~lt~~e~~~~~~~L~~~I~~LWqT~eiR~~KPtv~DE~~~~L~ 80 (794)
T PF00311_consen 1 ELEIEPVLTAHPTEAKRRTVLDKHRRIAELLDQLDNPDLTPRERAELEERLRREITALWQTDEIRREKPTVLDEARNGLY 80 (794)
T ss_dssp --EEEEEEE--TT--SSCHHHHHHHHHHHHHHHCT-TT--HHHHHHHHHHHHHHHHHHHCS--C-SS---HHHHHHHHHH
T ss_pred CceEEEEeccCCCcCcHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCccccccCCChHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002698 242 YFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDL 321 (891)
Q Consensus 242 y~~~~l~~avP~~~~~l~~al~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~~~~~r~~~l~~y~~~l~~L 321 (891)
||+++||++||.+|+++++++.+++++ ..+..|++|+|||||||||||||||||+||++++.++|++++++|.+++++|
T Consensus 81 y~~~~l~~aiP~l~~~l~~al~~~~~~-~~~~~~~~i~fGSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~y~~~l~~L 159 (794)
T PF00311_consen 81 YFENSLFDAIPQLYRRLERALREHYPD-PRLPVPPFIRFGSWIGGDRDGNPFVTAEVTREALRLQREAALRLYLRELDEL 159 (794)
T ss_dssp HHCCTCCCCHHHHHHHHHHHHHCCTS--S---T--SEEEEE-TTTB-TT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC-ccCCCCCeeEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998752 2334589999999999999999999999999999999999999999999999
Q ss_pred HHHhcC----cCCCHHHHHHHhhhhhcchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcC
Q 002698 322 MFELSM----WRCNDELRARADGLHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPED 397 (891)
Q Consensus 322 ~~~LS~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~EpyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~ 397 (891)
.++||+ .++|+++.++++...+..+..... ...++++||||++|..|++||.+|........... ....+
T Consensus 160 ~~~LS~S~~~~~~s~~L~~~l~~~~~~~~~~~~~----~~~~~~~EPYR~~l~~i~~RL~at~~~~~~~~~~~--~~~~~ 233 (794)
T PF00311_consen 160 RRELSLSDRRVPVSDELRARLEDDREALPEVAEE----FSRRNPDEPYRRKLRLIRARLEATLRRLEAGLSGR--ADPAA 233 (794)
T ss_dssp HHH-------S---HHHHHCCHCCCH---TT-SS----SS---TTSHHHHHHHHHHHHHHHHHHHHHHHHHTS--SS-ST
T ss_pred HHHHHHhhcccccHHHHHHHHhhccccccccccc----ccccccccHHHHHHHHHHHHHHHHHHHHhhccccc--CCCcc
Confidence 999998 469999999877654433332211 13446789999999999999999998766544322 12245
Q ss_pred CCCCChHHhhhHHHHHHHHHHhcCCccchhhHHHHHHHHHHhcCCccccccccccchHHHHHHHHHHHHcCCC-CCCCCC
Q 002698 398 IAYTHVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIG-SYREWS 476 (891)
Q Consensus 398 ~~y~~~~ell~dL~~i~~SL~~~~~~~~a~~~l~~li~~v~~FGfhla~LDiRQ~S~~H~~a~~ei~~~~g~~-~y~~l~ 476 (891)
.+|.+++||++||..|++||.++++..+|++.|.+||++|++||||||+|||||||++|++|+++|++++|++ +|.+|+
T Consensus 234 ~~Y~~~~Ell~dL~~i~~SL~~~g~~~lA~~~L~~lir~V~~FGfhLa~LDIRQnS~~H~~av~el~~~~g~~~~Y~~l~ 313 (794)
T PF00311_consen 234 EAYRSAEELLADLRLIRDSLIANGAERLADGRLRDLIRQVETFGFHLASLDIRQNSTVHEEAVAELLRHAGIPDDYAELS 313 (794)
T ss_dssp TS--SHHHHHHHHHHHHHHHHHTT-HCCCTTHHHHHHHHHHHCTTTSSEEEEEEECHHHHHHHHHHHHCCTS---CCCS-
T ss_pred cCCCCHHHHHHHHHHHHHHHHHCCCchHHHhhHHHHHHHHhccCcceecccccccHHHHHHHHHHHHHhcCCCCCcccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999995 899999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHhC----CCcchhHHHhhcCCChhhHHHHHHHHHHcCCC--
Q 002698 477 EEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISEL----PADSFGAYIISMATAPSDVLAVELLQRECRVK-- 550 (891)
Q Consensus 477 E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~~i~~~----~~~a~~~yIISmt~s~sDvL~vl~L~k~~Gl~-- 550 (891)
|++|+++|.++|+++||+.+++.++++++++++++|++++++ |+++|++||||||+++||||+|++|+|++|+.
T Consensus 314 e~~r~~~L~~eL~~~rpl~~~~~~~~~~~~~~l~~f~~~~~~~~~~g~~~~~~yIISmt~~~sdvL~v~~L~k~~gl~~~ 393 (794)
T PF00311_consen 314 EEERIALLTRELKSPRPLIPPFAPLSEETREVLDTFRVIAEIQKRYGPDAIGRYIISMTESASDVLEVLLLAKEAGLADG 393 (794)
T ss_dssp HHHHHHHHHHHHH-SS--S-TT----HHHHHHHHHHHHHHHS-----CCCEEEEEECT--SCHHHHHHHHHHHCTT---S
T ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHHHhhhcchhhhHHHheeeCCCChHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999987 57999999999999999999999999999994
Q ss_pred ----CCCccccccCChHHHhchHHHHHHHhccHHHHhhc---CCeeEEEEeeccCCCchhhHhHHHHHHHHHHHHHHHHH
Q 002698 551 ----QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRI---SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAK 623 (891)
Q Consensus 551 ----~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l---~~~qeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~ 623 (891)
++|+||||||||+||+|||.||++||++|+||+|| +++||||||||||||||||++|||+||+||++|+++|+
T Consensus 394 ~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMlGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~ 473 (794)
T PF00311_consen 394 GDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVMLGYSDSNKDGGYLAANWALYKAQEALVAVAR 473 (794)
T ss_dssp S---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEEECCCHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEeccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999 46999999999999999999999999999999999999
Q ss_pred HhCCeEEEecCCCCCCCCCCCchhhhhhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCC
Q 002698 624 QYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSP 703 (891)
Q Consensus 624 ~~gV~l~~FHGRGGSvgRGGGPt~~ai~aqP~gs~~g~irvTeQGEvI~~kyg~~~~A~r~Le~~~~a~l~~s~~~~~~~ 703 (891)
+|||+++|||||||||||||||+|+||+|||+||++|+||+|||||||++|||+|++|.||||++++|++++++.+++.+
T Consensus 474 ~~gV~l~~FHGRGGsvgRGGGp~~~ai~aqP~gtv~g~ir~TeQGEvI~~ky~~~~~A~~~LE~~~~a~l~~~~~~~~~~ 553 (794)
T PF00311_consen 474 KHGVKLRFFHGRGGSVGRGGGPTHRAILAQPPGTVNGRIRITEQGEVISAKYGNPEIAQRNLEQLTAAVLEASLRPPPEP 553 (794)
T ss_dssp CCT-EEEEEEESSTCGGCTHHHHHHHHHTS-TTTTTTEEEEEEECHHHHHHHSSHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HcCCeEEEEeCCCCcccCCCChHHHHHHhCCCCccCCceEEeechHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765555
Q ss_pred C-HHHHHHHHHHHHHHHHHHHHhhhcCCchhhHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhhccc
Q 002698 704 K-PEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHL 782 (891)
Q Consensus 704 ~-~~~~~~m~~ls~~s~~~Yr~lv~~~p~F~~yF~~aTPi~ei~~l~IGSRPa~R~~~~~l~dLRAIPWVFaWtQ~R~~l 782 (891)
. ++|+++|++||+.|+++||+|||++|+|++||+++|||+||+.||||||||||++..+++|||||||||||||+|++|
T Consensus 554 ~~~~~~~~m~~ls~~s~~~Yr~Lv~~~p~F~~yf~~aTPi~ei~~lnIGSRPa~R~~~~~l~dLRAIPWVFsWtQ~R~~l 633 (794)
T PF00311_consen 554 PPPEWRELMEELSEASFKAYRALVYENPGFLEYFRQATPIDEIGKLNIGSRPAKRKGERSLEDLRAIPWVFSWTQSRFNL 633 (794)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHS-HHHHHHCS-SSS---------GCTS-CHHHHHHHHHTT--H
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHhcCHHHHHHhccccCCCccCCCCCCCCcCCcCceeeeeecccccc
Confidence 4 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhCCCcHHHHHHHHhhChhHHHHHHHHHHHHHhccHHHHHHHHhhcCCccc-hHHHHHHHHHHHHH
Q 002698 783 PVWLGFGAAFKHVIQKDIKNLHMLQEMYNLWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSEEL-QPFGEKLRANYAET 861 (891)
Q Consensus 783 P~WyGvGsAl~~~~~~~~~~~~~L~~my~~wpfF~t~idnvem~LaKaD~~Ia~~Ya~l~~d~~~-~~i~~~i~~E~~~T 861 (891)
|||||+|+||++++.+++++++.||+||++||||+++|||++|+|+||||.||++|++|++|+++ .+||+.|++||++|
T Consensus 634 pgWyG~Gsal~~~~~~~~~~~~~L~~my~~wpfF~~~idn~~m~laK~d~~ia~~Y~~l~~~~~~~~~i~~~i~~E~~~T 713 (794)
T PF00311_consen 634 PGWYGVGSALEEFIQEDPGGLEQLQEMYREWPFFRTLIDNVEMSLAKADMDIAKRYAELVPDKELRQRIFEQIRDEYERT 713 (794)
T ss_dssp HHCTTHHHHHHHHHHCTTCCHHHHHHHHHH-HHHHHHHHHHHHHHCC--HHHHHHCHHHCS-CC-CHHHHHHHHHHHHHH
T ss_pred ceeecccHHHHHHHccCcchHHHHHHHHhcCcHHHHHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877778999999999999999999999999999999999999999999984 59999999999999
Q ss_pred HHHHHHHhCCcccccCCchHHHHHHhhhc
Q 002698 862 KSLLLQVCGANHWSDFRKVIIVISKLRYK 890 (891)
Q Consensus 862 ~~~vl~itg~~~Ll~~~p~l~~si~~r~~ 890 (891)
+++|++|||+++||+++|+|++||++|+.
T Consensus 714 ~~~~l~itg~~~ll~~~p~l~~si~~R~p 742 (794)
T PF00311_consen 714 KEMLLAITGQKELLDNNPVLQRSIQLRNP 742 (794)
T ss_dssp HHHHHHHHT-SSTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCcccccCChHHHHHHHHHHH
Confidence 99999999999999999999999999974
No 5
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=100.00 E-value=3.4e-81 Score=707.18 Aligned_cols=312 Identities=20% Similarity=0.215 Sum_probs=268.6
Q ss_pred hCCCcchhHHHhhcCCChhhHHHHHHHHHHcC--CC----------CCCccccccCChHHHhchHHHHHHHhccHHHHhh
Q 002698 517 ELPADSFGAYIISMATAPSDVLAVELLQRECR--VK----------QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNR 584 (891)
Q Consensus 517 ~~~~~a~~~yIISmt~s~sDvL~vl~L~k~~G--l~----------~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~ 584 (891)
..++++|+.||||||+++||||+|++|+|++| +. +.|+|||||||++||.||+.||++||++|.++.
T Consensus 116 ~~~~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~- 194 (494)
T PRK13655 116 SFYTQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHG- 194 (494)
T ss_pred hcCchhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcC-
Confidence 44688999999999999999999999999998 52 479999999999999999999999999975543
Q ss_pred cCCeeEEEEeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCc--hhhhhhcCCCCcccCce
Q 002698 585 ISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGP--THLAILSQPPDTIHGSL 662 (891)
Q Consensus 585 l~~~qeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGSvgRGGGP--t~~ai~aqP~gs~~g~i 662 (891)
+.|||||||||||||||+++|+|++|+||++|+++++++||++++|||||||||||||| ++++|++||+ |.+
T Consensus 195 --~~qeVmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~fhGrGg~~~RGGgpp~~~~ail~q~~----g~~ 268 (494)
T PRK13655 195 --KYLRVFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYPILGVGSLPFRGHLSPENLENVLEEYP----GVY 268 (494)
T ss_pred --CeeEEEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCCCChHHHHHHHhCCC----CCe
Confidence 78999999999999999999999999999999999999999999999999999999998 8899999998 559
Q ss_pred eeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCchhhHHHhhCch
Q 002698 663 RVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLATPE 742 (891)
Q Consensus 663 rvTeQGEvI~~kyg~~~~A~r~Le~~~~a~l~~s~~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv~~~p~F~~yF~~aTPi 742 (891)
|+|||| +.||+.|. ......+.+++++...++..+.++|+++|+++++.|+++||++|+++|+|+.||+++||.
T Consensus 269 r~TeQg---a~rY~~~~---e~~~~av~~~~~~~~~~p~~~~~~~~~~m~~la~~s~~~Yr~~V~~~~~fv~yf~~~tP~ 342 (494)
T PRK13655 269 TFTVQS---AFRYDYPY---EEVKKAIEEINEKLIAPPRILSEEDKEELLEIIEKYSERYQSQIEKLADTINRVAKLIPK 342 (494)
T ss_pred EEEecc---ccccCCCH---HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHcCcH
Confidence 999999 49999996 222333333446766666677889999999999999999999999999999999999999
Q ss_pred hHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhhccccchhhHHHHHHHHHHhCCCcHHHHHHHH----hhChhHHH
Q 002698 743 MEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIKNLHMLQEMY----NLWPFFRV 818 (891)
Q Consensus 743 ~ei~~l~IGSRPa~R~~~~~l~dLRAIPWVFaWtQ~R~~lP~WyGvGsAl~~~~~~~~~~~~~L~~my----~~wpfF~t 818 (891)
.+++.|||||||+||+. +++++||||||||||+|+| ++|+|||+|+||+.+++++ ++.|.++| ++|.|...
T Consensus 343 ~r~r~L~iGsrp~~R~~-~gie~lRAIpwvfAw~q~r-~~P~wlG~g~aL~~~~~~~---ld~l~~~yp~l~~dl~~a~~ 417 (494)
T PRK13655 343 RRDRKLHIGLFGYSRSV-GGVSLPRAISFTGALYSIG-LPPELIGAGRLLELAKEDD---LDILLENYPNLKKDLEFAAR 417 (494)
T ss_pred HHHhhccccCCCCCCCC-CCCCCCCccCchhhhhhCC-CChHHHhHHHHHHHHHHhH---HHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999985 7799999999999999999 9999999999999988744 89999988 66666544
Q ss_pred HHHH-HHH--------HHHhccHHHHHHHHhhcCCcc
Q 002698 819 TIDL-VEM--------VFAKGDPGIAALYDKLLVSEE 846 (891)
Q Consensus 819 ~idn-vem--------~LaKaD~~Ia~~Ya~l~~d~~ 846 (891)
+++. +.. .-.+-|+..++.|-++-.+|+
T Consensus 418 y~n~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~ 454 (494)
T PRK13655 418 FFNPEVAEKLIDEETIAEIKEDIDEAKEILGLELGPD 454 (494)
T ss_pred hcCHHHHHHhccchhHHHHHHHHHHHHHHhCCCCCCC
Confidence 4331 111 124455555555555544443
No 6
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=100.00 E-value=4.5e-50 Score=454.64 Aligned_cols=286 Identities=20% Similarity=0.251 Sum_probs=234.3
Q ss_pred chhHHHhhcCCChhhHHHHHHHHHHcCC---------------------CCCCccccccCChHHHhchHHHHHHHhccHH
Q 002698 522 SFGAYIISMATAPSDVLAVELLQRECRV---------------------KQPLRVVPLFEKLADLEAAPASVARLFSIDW 580 (891)
Q Consensus 522 a~~~yIISmt~s~sDvL~vl~L~k~~Gl---------------------~~~l~VvPLFETi~DL~~a~~il~~ll~~p~ 580 (891)
.|--.|||||+++||||+|+.|+|++|+ .+.|+|||||||++||.||++||+++|+
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~--- 198 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAE--- 198 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHH---
Confidence 6777899999999999999999999985 1478999999999999999999999998
Q ss_pred HHhhc-CCeeEEEEeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCC-chhhh-hhcCCCCc
Q 002698 581 YRNRI-SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGG-PTHLA-ILSQPPDT 657 (891)
Q Consensus 581 yr~~l-~~~qeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGSvgRGGG-Pt~~a-i~aqP~gs 657 (891)
++ .+.|+||||||||+||+|+++|+|++|+||++|.++|+++||++++|||||||+||||| |.+.+ +++|||
T Consensus 199 ---~~~~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~pfhGrGgspfRGGg~P~n~a~il~qpp-- 273 (506)
T TIGR02751 199 ---AHEPEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYPIIGAGSLPFRGHLSPENIERVLDEYP-- 273 (506)
T ss_pred ---hcCcCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeecCCCCcCCCCChhhHHHHHhcCC--
Confidence 44 66799999999999999999999999999999999999999999999999999999999 99999 999999
Q ss_pred ccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHH---ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCchhh
Q 002698 658 IHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLE---HGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVE 734 (891)
Q Consensus 658 ~~g~irvTeQGEvI~~kyg~~~~A~r~Le~~~~a~l~---~s~~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv~~~p~F~~ 734 (891)
|.+|+|||| +.|||+|. |++++|++. +...+++.+.++|+++|+.+++.|+++||++|..--+.+.
T Consensus 274 --G~~t~TeQs---afRYd~p~------e~v~~Av~~~~~a~~~~~~~~~~e~~e~m~~ia~~s~~~Yr~~V~~la~~in 342 (506)
T TIGR02751 274 --GVYTFTVQS---AFKYDYPR------EEVVAAIRRINEKLPNAPPILIDEEEEIIVEIIEIYAKRYQKIIEKLAPTIN 342 (506)
T ss_pred --CceEEeeec---hhhcCCCH------HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999 99999999 999999994 4444455567889999999999999999999965555554
Q ss_pred HHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhhccccchhhHHHHHHHHHHhCCCcHHHHHHHHhhCh
Q 002698 735 YFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIKNLHMLQEMYNLWP 814 (891)
Q Consensus 735 yF~~aTPi~ei~~l~IGSRPa~R~~~~~l~dLRAIPWVFaWtQ~R~~lP~WyGvGsAl~~~~~~~~~~~~~L~~my~~wp 814 (891)
.....-|=.==-.+.||-===+|. -++++=-|||-++.|| -|=-+-|-..|+| +|.++.+++ ++.|.+.|..
T Consensus 343 ~ia~~iP~rR~RklhiGlfgYsR~-~~~~~lPRAI~Ft~al-YSiG~PPeliG~~-~L~~~~~~~---l~~l~~~yp~-- 414 (506)
T TIGR02751 343 RIASYIPKRRDRKLHVGLFGYSRS-VGGVSLPRAIKFTGAL-YSIGLPPELIGIG-SLSELDEDD---LEVIKELYPN-- 414 (506)
T ss_pred HHHHhCCCchhhhhhccCcccccC-CCCCCCCchhhhhhhh-hhcCCChHHhChh-hhhhcchhH---HHHHHHHhhh--
Confidence 444444433333344432112332 1346778999999999 6778889999999 899876443 7777776654
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHH
Q 002698 815 FFRVTIDLVEMVFAKGDPGIAALY 838 (891)
Q Consensus 815 fF~t~idnvem~LaKaD~~Ia~~Y 838 (891)
+-+.++-+..-.|++.++.|
T Consensus 415 ----l~~dl~~a~~y~n~~~~~~l 434 (506)
T TIGR02751 415 ----LRSDLSFAARYLNPESADSL 434 (506)
T ss_pred ----HHHHHHHHHHhcCHHHHHHH
Confidence 44445555555555555554
No 7
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=99.46 E-value=1.3e-12 Score=149.15 Aligned_cols=286 Identities=21% Similarity=0.223 Sum_probs=182.7
Q ss_pred CCcchhHHHhhcCCChhhHHHHHHHHH----------------HcCCC---CCCccccccCChHHHhchHHHHHHHhccH
Q 002698 519 PADSFGAYIISMATAPSDVLAVELLQR----------------ECRVK---QPLRVVPLFEKLADLEAAPASVARLFSID 579 (891)
Q Consensus 519 ~~~a~~~yIISmt~s~sDvL~vl~L~k----------------~~Gl~---~~l~VvPLFETi~DL~~a~~il~~ll~~p 579 (891)
+..+|--.|.-||+|+.+|..|+-..+ +.+.. ..++|+||||+.+.+-|+++|+++++
T Consensus 117 ~~~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~--- 193 (491)
T PF14010_consen 117 DVQPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYL--- 193 (491)
T ss_dssp SS-S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHH---
T ss_pred cCcchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHH---
Confidence 455777789999999999999965432 22222 58999999999999999999999988
Q ss_pred HHHhhc---CCeeEEEEeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch--hhhhhcCC
Q 002698 580 WYRNRI---SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT--HLAILSQP 654 (891)
Q Consensus 580 ~yr~~l---~~~qeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGSvgRGGGPt--~~ai~aqP 654 (891)
++. -..|.|+||-|||.--.|.++|....=-|-.+|.++.++.||++--.=|-|..+-|||=.- ...++.+=
T Consensus 194 ---~~~g~~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~IyPIiG~GS~PFRG~l~p~~~~~~~~EY 270 (491)
T PF14010_consen 194 ---KDKGRDPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIYPIIGVGSPPFRGGLSPPNVERVLEEY 270 (491)
T ss_dssp ---HHTT---SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-BSSGGGT---TTGHHHHHHHT
T ss_pred ---HHhcCCchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCceeeeeccCCCCcCCCCChHhHHHHHHhc
Confidence 333 3689999999999999999999999999999999999999999999999999999999321 11122221
Q ss_pred CCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCchhh
Q 002698 655 PDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVE 734 (891)
Q Consensus 655 ~gs~~g~irvTeQGEvI~~kyg~~~~A~r~Le~~~~a~l~~s~~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv~~~p~F~~ 734 (891)
.|--.+|.|-- .||..|.--..+.=..+ .......+...+++..+.+-.+...+.+.|+..|..--+.+.
T Consensus 271 ----~gv~T~TIQSA---frYD~p~~~v~~ai~~l---~~~~~~~p~~~~~ee~~~~~~ii~~~s~~Y~~~i~~la~~In 340 (491)
T PF14010_consen 271 ----PGVYTFTIQSA---FRYDYPYEEVIKAIEKL---NEAPRKKPRIIDEEEEEILLEIIEKYSAEYRSQIEKLAPTIN 340 (491)
T ss_dssp ----TT-SEEEE-HH---HHHTTHHHHHHHHHHHH---HHGGG-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCeeEEEeeeh---hhcCCCHHHHHHHHHHH---HhcccCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26689999985 99999876554433311 111111233345666778999999999999998744333322
Q ss_pred HHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhhccccchhhHHHHHHHHHHhCCCcHHHHHHHHhhCh
Q 002698 735 YFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIKNLHMLQEMYNLWP 814 (891)
Q Consensus 735 yF~~aTPi~ei~~l~IGSRPa~R~~~~~l~dLRAIPWVFaWtQ~R~~lP~WyGvGsAl~~~~~~~~~~~~~L~~my~~wp 814 (891)
.....-|=.=--.+.||-===+|. -++..=-|||.++.|| -|=-+-|...|+|+.++... + .++.|.+.|..
T Consensus 341 ~va~~vP~rR~RklhiGlfgYsR~-~~~~~LPRAI~Ftaal-YSiGlPPEllg~~~ll~l~~-~---~l~~l~~~yp~-- 412 (491)
T PF14010_consen 341 RVARYVPKRRDRKLHIGLFGYSRS-VGGVNLPRAITFTAAL-YSIGLPPELLGLGRLLELSK-E---ELDVLLEYYPN-- 412 (491)
T ss_dssp HHHTTS---S-B----------EE-E--HE---HHHHHHHH-HHTT--GGGTTHHHHHHHHH-H---HHHHHHHHSTT--
T ss_pred HHHHhCCchhhHHhhhcccccccc-cCCccCcchhhhhhhH-HhcCCCHHHhchHHHHHHhH-H---HHHHHHHHHHh--
Confidence 222222211111122210001111 1234567999999999 67778899999999997654 2 37888888877
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHhh
Q 002698 815 FFRVTIDLVEMVFAKGDPGIAALYDKL 841 (891)
Q Consensus 815 fF~t~idnvem~LaKaD~~Ia~~Ya~l 841 (891)
-|.|+.-|..|.+.
T Consensus 413 -------------l~~Dl~~a~~y~n~ 426 (491)
T PF14010_consen 413 -------------LKEDLEFAARYFNP 426 (491)
T ss_dssp -------------HHHHHHHHHTT--S
T ss_pred -------------HHHHHHHHHHhcCh
Confidence 67788888888764
No 8
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=98.92 E-value=4.8e-08 Score=109.34 Aligned_cols=283 Identities=22% Similarity=0.233 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHHhC---------CCcchhHHHhhcCCChhhHHHHHHHHH---------HcCCC----------CCCc
Q 002698 503 EEIADVLDTFHVISEL---------PADSFGAYIISMATAPSDVLAVELLQR---------ECRVK----------QPLR 554 (891)
Q Consensus 503 ~~~~e~l~~f~~i~~~---------~~~a~~~yIISmt~s~sDvL~vl~L~k---------~~Gl~----------~~l~ 554 (891)
-+.+-++.++.+|... ....|--.|.-||+|+..|+.|.-..+ +.|.. .-|.
T Consensus 96 ~erkll~e~l~~i~~s~d~a~~f~~d~~pIfEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~P~~Ie 175 (488)
T COG1892 96 AERKLLLETLESIARSYDYARVFYGDVAPIFEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFIPKLIE 175 (488)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhccccccceeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhccccHHHHh
Confidence 4445556677776632 134566779999999999999965433 33331 2588
Q ss_pred cccccCChHHHhchHHHHHHHhccHHHHhhc-CCeeEEEEeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEec
Q 002698 555 VVPLFEKLADLEAAPASVARLFSIDWYRNRI-SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFH 633 (891)
Q Consensus 555 VvPLFETi~DL~~a~~il~~ll~~p~yr~~l-~~~qeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~FH 633 (891)
|+||||+++.|.++..|..... .-- -..|.|.||-||+.-.-|.++|....-+|-.+|.++-++-||++-..-
T Consensus 176 viPl~e~~~~ll~a~~i~~~y~------~g~~~e~~RVFLarSDpAmnyG~laA~l~~K~AL~~l~el~ee~~~~i~PI~ 249 (488)
T COG1892 176 VIPLFEDRESLLKAALIVGEYA------EGRDPEYLRVFLARSDPAMNYGHLAAVLAVKKALSELSELSEELGVPIYPIL 249 (488)
T ss_pred hhHhHhhHHHHHHHHHHHHHHH------hcCCchhheeeeecCchhhccchHHHHHHHHHHHHHHHHHHhhcCCccccee
Confidence 9999999999999998887632 222 356889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchhh--hhhcCCCCcccCceeeecccchhhhhcCCh-hHHHHHHHHHHHHHHHccCCCCCCCCHHHHHH
Q 002698 634 GRGGTVGRGGGPTHL--AILSQPPDTIHGSLRVTVQGEVIEQSFGEE-HLCFRTLQRFSAATLEHGMHPPVSPKPEWRAL 710 (891)
Q Consensus 634 GRGGSvgRGGGPt~~--ai~aqP~gs~~g~irvTeQGEvI~~kyg~~-~~A~r~Le~~~~a~l~~s~~~~~~~~~~~~~~ 710 (891)
|-|..+-|||=.-+. ..+.+=+ |--..|.|.- .||..+ +.+.+-.+.+-+ .. ++. ..+...+.
T Consensus 250 G~Gs~PFRG~l~P~n~e~~~~EY~----gv~T~TvQSa---fkYD~~~~~v~~~i~~i~~-----~~-~~~-~s~~~~e~ 315 (488)
T COG1892 250 GVGSLPFRGHLRPENAENVLEEYA----GVYTYTVQSA---FKYDHEYGDVVKAIERIKS-----VK-RER-LSAYEEEE 315 (488)
T ss_pred cCCCCCcCCCCChhhhHHHHHHcC----CceEEEEeec---ccccCCHHHHHHHHHHHHh-----hc-ccc-cccccHHH
Confidence 999999999754333 2333332 5578899986 899876 344554444222 11 111 22233445
Q ss_pred HHHHHHHHHHHHHHhhhcCCchhhHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhhccccchhhHHH
Q 002698 711 MDEMAVIATKEYRSIVFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGA 790 (891)
Q Consensus 711 m~~ls~~s~~~Yr~lv~~~p~F~~yF~~aTPi~ei~~l~IGSRPa~R~~~~~l~dLRAIPWVFaWtQ~R~~lP~WyGvGs 790 (891)
.-.+...-++.||..|..=-+-+.=....-|-.--.+|.||++==+|.- +.++=-|||-++.|| -+=-+-|...|+|.
T Consensus 316 ~~~~i~~~~~~Y~~~i~~la~~Inrla~~iP~rR~RklHvGlfGYsR~~-g~~~LPRAI~fTasl-YsiG~PPeLlG~~~ 393 (488)
T COG1892 316 LLAVITIYEEEYRRQIRILAGTINRLADRIPDRRDRKLHVGLFGYSRSI-GELSLPRAIKFTASL-YSIGVPPELLGTGA 393 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhcCcccccccC-CcccCcchheeehhh-hhcCCCHHHhcchh
Confidence 5666777788999876332222222222333333334778877777742 356778999999999 67778899999998
Q ss_pred HHHHHHHhCCCcHHHHHHHHhh
Q 002698 791 AFKHVIQKDIKNLHMLQEMYNL 812 (891)
Q Consensus 791 Al~~~~~~~~~~~~~L~~my~~ 812 (891)
...+ + ..++.+.+.|..
T Consensus 394 ls~~---d--~~~~~v~e~yp~ 410 (488)
T COG1892 394 LSND---D--ADLDVVSEYYPN 410 (488)
T ss_pred cccc---c--chHHHHHHHhhh
Confidence 8851 1 136677776655
No 9
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=96.11 E-value=0.017 Score=61.06 Aligned_cols=95 Identities=13% Similarity=0.199 Sum_probs=76.6
Q ss_pred hhHHHhhcCCChhhHHHHHHHHHHcCC-----CCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeecc
Q 002698 523 FGAYIISMATAPSDVLAVELLQRECRV-----KQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSD 597 (891)
Q Consensus 523 ~~~yIISmt~s~sDvL~vl~L~k~~Gl-----~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSD 597 (891)
+...++.|++++.|+..+.-+.+..-. ...+.|+|+.||.+.++|+++|+ +. .+.--+++|..|
T Consensus 85 ~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~----a~-------~~v~~l~~G~~D 153 (221)
T PF03328_consen 85 ADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIA----AV-------PGVDGLFFGPAD 153 (221)
T ss_dssp SSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHH----TS-------TTEEEEEE-HHH
T ss_pred CCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhc----cc-------CCeeEEEeCcHH
Confidence 334699999999999999998887522 24789999999999999999998 22 267889999999
Q ss_pred CCCchhhHh--HHHHHHHHHHHHHHHHHHhCCe
Q 002698 598 SGKDAGRLS--AAWQLYKTQEELVKVAKQYGVK 628 (891)
Q Consensus 598 S~KDgG~la--s~W~Ly~Aq~~L~~v~~~~gV~ 628 (891)
=+.+-|.-. ...++..+..+++..|+++|+.
T Consensus 154 ls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~ 186 (221)
T PF03328_consen 154 LSASLGIPGQPDHPEVLEARSKVVLAARAAGKP 186 (221)
T ss_dssp HHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEE
T ss_pred HHhhhccCCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 999999874 5678999999999999999984
No 10
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=95.53 E-value=0.023 Score=61.85 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=58.3
Q ss_pred CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhHh--HHHHHHHHHHHHHHHHHHhCCe
Q 002698 551 QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLS--AAWQLYKTQEELVKVAKQYGVK 628 (891)
Q Consensus 551 ~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~la--s~W~Ly~Aq~~L~~v~~~~gV~ 628 (891)
..+.|+|+.||.+.++|+.+|+.. .+.--||+|..|=+.+-|... .+=++..+..++.+.|+++|+.
T Consensus 144 ~~~~vi~~IEt~~av~ni~eI~av-----------~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~ 212 (256)
T PRK10558 144 KNITVLVQIESQQGVDNVDAIAAT-----------EGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKP 212 (256)
T ss_pred cccEEEEEECCHHHHHHHHHHhCC-----------CCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCc
Confidence 367799999999999999999853 357789999999888888643 2236888999999999999998
Q ss_pred EEEe
Q 002698 629 LTMF 632 (891)
Q Consensus 629 l~~F 632 (891)
+-+|
T Consensus 213 ~g~~ 216 (256)
T PRK10558 213 SGIL 216 (256)
T ss_pred eEEc
Confidence 8544
No 11
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=94.93 E-value=0.056 Score=58.68 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=58.0
Q ss_pred CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhHh--HHHHHHHHHHHHHHHHHHhCCe
Q 002698 551 QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLS--AAWQLYKTQEELVKVAKQYGVK 628 (891)
Q Consensus 551 ~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~la--s~W~Ly~Aq~~L~~v~~~~gV~ 628 (891)
..+.|+|+.||.+.++|+.+|+.. .+.--||+|-.|=+.+-|... ..=++..|..++.+.|+++|+.
T Consensus 137 ~~~~vi~~IEt~~av~n~~eI~av-----------~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~ 205 (249)
T TIGR03239 137 DNITVLVQIESQKGVDNVDEIAAV-----------DGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKP 205 (249)
T ss_pred cccEEEEEECCHHHHHhHHHHhCC-----------CCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 467799999999999999999853 356779999999888777643 2236888999999999999999
Q ss_pred EEEe
Q 002698 629 LTMF 632 (891)
Q Consensus 629 l~~F 632 (891)
+-+|
T Consensus 206 ~g~~ 209 (249)
T TIGR03239 206 CGIL 209 (249)
T ss_pred EEEc
Confidence 8654
No 12
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=94.17 E-value=0.14 Score=60.48 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=86.8
Q ss_pred HHHHHhCCCcchhHHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEE
Q 002698 512 FHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEV 591 (891)
Q Consensus 512 f~~i~~~~~~a~~~yIISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeV 591 (891)
++.+...+ +....+|.++++.||-.+--+....|. ..+.|+|+.||.+.++|..+|+.. . | -|
T Consensus 177 l~~~~~~~---~d~I~lskV~sa~dv~~l~~~l~~~~~-~~~~Iia~IEt~~av~nl~eI~~~--~-d----------gi 239 (473)
T TIGR01064 177 LKFGVEQG---VDMVAASFVRTAEDVLEVREVLGEKGA-KDVKIIAKIENQEGVDNIDEIAEA--S-D----------GI 239 (473)
T ss_pred HHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHhcCC-CCceEEEEECCHHHHHhHHHHHhh--C-C----------cE
Confidence 34444444 344789999999999999766666653 257899999999999999999976 1 1 69
Q ss_pred EEeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecC-------CCCCCCCCCC
Q 002698 592 MIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHG-------RGGTVGRGGG 644 (891)
Q Consensus 592 MlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~FHG-------RGGSvgRGGG 644 (891)
|+|-.|=+.+-|. =++..+|.+++..|+++|+.+.+ ++ .-..+-|.-.
T Consensus 240 ~iG~gDL~~~lg~----~~l~~~~~~ii~aaraag~pvi~-atqmLeSM~~~p~PTRAe~ 294 (473)
T TIGR01064 240 MVARGDLGVEIPA----EEVPIAQKKMIRKCNRAGKPVIT-ATQMLDSMIKNPRPTRAEV 294 (473)
T ss_pred EEchHHHHhhcCc----HHHHHHHHHHHHHHHHcCCCEEE-EChhhhhhhcCCCCCcccH
Confidence 9999999999993 36788999999999999998664 44 4456666553
No 13
>PRK08187 pyruvate kinase; Validated
Probab=90.61 E-value=0.61 Score=55.40 Aligned_cols=111 Identities=20% Similarity=0.146 Sum_probs=84.5
Q ss_pred hHHHhhcCCChhhHHHHHHHHHHcCC--CCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCc
Q 002698 524 GAYIISMATAPSDVLAVELLQRECRV--KQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKD 601 (891)
Q Consensus 524 ~~yIISmt~s~sDvL~vl~L~k~~Gl--~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KD 601 (891)
....+|+++++.||..+.-+..+.|. ...+.|+|..||...++|.++|+..--. ...--||+|--|=+-+
T Consensus 326 D~I~lSfV~saeDV~~l~~~L~~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~--------~~v~GImiARGDLgvE 397 (493)
T PRK08187 326 DLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLKIETPRAVANLPELIVQAAG--------RQPFGVMIARGDLAVE 397 (493)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCc--------CCCcEEEEEchHhhhh
Confidence 34688999999999999777776652 2478999999999999999999975211 1234699999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch
Q 002698 602 AGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT 646 (891)
Q Consensus 602 gG~las~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGSvgRGGGPt 646 (891)
-|+-. +-..|++++..|+.+|+.++.===-=.|+-..+=||
T Consensus 398 ig~e~----~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PT 438 (493)
T PRK08187 398 IGFER----LAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPS 438 (493)
T ss_pred cCccc----ChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCc
Confidence 88633 344599999999999999876433334555555566
No 14
>PRK09206 pyruvate kinase; Provisional
Probab=90.58 E-value=0.82 Score=54.01 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=81.2
Q ss_pred HHHHHhCCCcchhHHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEE
Q 002698 512 FHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEV 591 (891)
Q Consensus 512 f~~i~~~~~~a~~~yIISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeV 591 (891)
++.....+-+. +-.|..++++||.++--+....|. ..+.|++-.||.+.++|.++|++. .=.|
T Consensus 178 i~f~~~~~vD~---ia~SFVr~~~Dv~~~r~~l~~~~~-~~~~iiaKIEt~eav~nldeIl~~-------------~DgI 240 (470)
T PRK09206 178 LIFGCEQGVDF---VAASFIRKRSDVLEIREHLKAHGG-ENIQIISKIENQEGLNNFDEILEA-------------SDGI 240 (470)
T ss_pred HHHHHHcCCCE---EEEcCCCCHHHHHHHHHHHHHcCC-CCceEEEEECCHHHHHhHHHHHHh-------------CCEE
Confidence 34344444443 346999999999999777777663 357899999999999999999998 2359
Q ss_pred EEeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002698 592 MIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (891)
Q Consensus 592 MlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~ 631 (891)
|+|-.|=+-.-| ...+-.+|+++.+.|+++|+.+..
T Consensus 241 mVaRGDLgvelg----~e~vp~~qk~ii~~~~~~gkpvI~ 276 (470)
T PRK09206 241 MVARGDLGVEIP----VEEVIFAQKMMIEKCNRARKVVIT 276 (470)
T ss_pred EECcchhhhhcC----HHHHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999998 788889999999999999998876
No 15
>PLN02623 pyruvate kinase
Probab=90.39 E-value=0.81 Score=55.14 Aligned_cols=87 Identities=15% Similarity=0.265 Sum_probs=76.8
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhH
Q 002698 526 YIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605 (891)
Q Consensus 526 yIISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~l 605 (891)
+-+|..++++||.++--+.+.+|- .+.|++-.||.+.++|.++|++. .=-||+|-.|=+-.-|.
T Consensus 295 ialSFVr~a~DV~~~r~~l~~~~~--~~~iiakIEt~eaVeNldeIl~g-------------~DgImIgrgDLgvelg~- 358 (581)
T PLN02623 295 YAVSFVKDAQVVHELKDYLKSCNA--DIHVIVKIESADSIPNLHSIITA-------------SDGAMVARGDLGAELPI- 358 (581)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCC--cceEEEEECCHHHHHhHHHHHHh-------------CCEEEECcchhhhhcCc-
Confidence 567999999999999887777763 67899999999999999999993 23699999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002698 606 SAAWQLYKTQEELVKVAKQYGVKLTM 631 (891)
Q Consensus 606 as~W~Ly~Aq~~L~~v~~~~gV~l~~ 631 (891)
..+-.+|+++.+.|+++|+.+..
T Consensus 359 ---~~v~~~qk~Ii~~~~~~gKpviv 381 (581)
T PLN02623 359 ---EEVPLLQEEIIRRCRSMGKPVIV 381 (581)
T ss_pred ---HHHHHHHHHHHHHHHHhCCCEEE
Confidence 78889999999999999998864
No 16
>PRK05826 pyruvate kinase; Provisional
Probab=89.98 E-value=0.79 Score=54.16 Aligned_cols=91 Identities=14% Similarity=0.240 Sum_probs=77.4
Q ss_pred hhHHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCch
Q 002698 523 FGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDA 602 (891)
Q Consensus 523 ~~~yIISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDg 602 (891)
+...++||.+++.|+-++--+....|- ..+.|++-.||.+.++|..+|++. .=.||+|-.|=+-+-
T Consensus 187 ~d~I~~sfV~saedv~~l~~~l~~~~~-~~~~iiakIEt~eav~nldeI~~~-------------~DgImIgrgDLg~el 252 (465)
T PRK05826 187 VDYIAVSFVRSAEDVEEARRLLREAGC-PHAKIIAKIERAEAVDNIDEIIEA-------------SDGIMVARGDLGVEI 252 (465)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHcCC-cCceEEEEEcCHHHHHhHHHHHHH-------------cCEEEECcchhhhhc
Confidence 345578999999999999777776663 267899999999999999999998 135999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002698 603 GRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (891)
Q Consensus 603 G~las~W~Ly~Aq~~L~~v~~~~gV~l~~ 631 (891)
| .-.+..+|+++.+.|+++|..+.+
T Consensus 253 g----~~~v~~~qk~Ii~~c~~~gKpvi~ 277 (465)
T PRK05826 253 P----DEEVPGLQKKIIRKAREAGKPVIT 277 (465)
T ss_pred C----cHhHHHHHHHHHHHHHHcCCCEEE
Confidence 8 457899999999999999998764
No 17
>PTZ00300 pyruvate kinase; Provisional
Probab=89.26 E-value=2 Score=50.62 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=79.9
Q ss_pred HHhCCCcchhHHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEe
Q 002698 515 ISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIG 594 (891)
Q Consensus 515 i~~~~~~a~~~yIISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlG 594 (891)
.-+.+-+. ..+||.+++.|+-++.-++...| ..+.|+.-.||.+.++|.++|++. .=-||+|
T Consensus 156 ald~gvd~---I~~SfVrsaeDv~~vr~~l~~~~--~~~~IiaKIEt~eav~nldeI~~~-------------~DgImVa 217 (454)
T PTZ00300 156 GVEQGVDM---IFASFIRSAEQVGEVRKALGAKG--GDIMIICKIENHQGVQNIDSIIEE-------------SDGIMVA 217 (454)
T ss_pred HHHCCCCE---EEECCCCCHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHh-------------CCEEEEe
Confidence 33455444 45899999999999987776655 367899999999999999999954 3469999
Q ss_pred eccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002698 595 YSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (891)
Q Consensus 595 YSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~ 631 (891)
--|=+-.-| ...+-.+|+++.+.|+++|..+..
T Consensus 218 RGDLgvei~----~e~vp~~Qk~Ii~~~~~~gkpvI~ 250 (454)
T PTZ00300 218 RGDLGVEIP----AEKVVVAQKILISKCNVAGKPVIC 250 (454)
T ss_pred cchhhhhcC----hHHHHHHHHHHHHHHHHcCCCEEE
Confidence 999998888 788889999999999999998875
No 18
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=87.95 E-value=1.6 Score=51.93 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=75.5
Q ss_pred HHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhh
Q 002698 525 AYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGR 604 (891)
Q Consensus 525 ~yIISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~ 604 (891)
-+-+|..++++||-++--+.+..| ..+.|++-.||.+.++|.++|++. .=.||+|-.|=+-.-|.
T Consensus 190 ~ia~SFV~~~~di~~~r~~l~~~~--~~~~iiakIEt~~av~nldeI~~~-------------~DgImIargDLg~e~g~ 254 (480)
T cd00288 190 MIFASFVRKASDVLEIREVLGEKG--KDIKIIAKIENQEGVNNFDEILEA-------------SDGIMVARGDLGVEIPA 254 (480)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHh-------------cCEEEECcchhhhhcCh
Confidence 345799999999999977777665 367799999999999999999998 13599999999988883
Q ss_pred HhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002698 605 LSAAWQLYKTQEELVKVAKQYGVKLTM 631 (891)
Q Consensus 605 las~W~Ly~Aq~~L~~v~~~~gV~l~~ 631 (891)
=.+-.+|+++.+.|+++|+.+..
T Consensus 255 ----~~v~~~qk~ii~~~~~~gkpvi~ 277 (480)
T cd00288 255 ----EEVFLAQKMLIAKCNLAGKPVIT 277 (480)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCEEE
Confidence 67788999999999999998764
No 19
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=87.67 E-value=0.88 Score=50.47 Aligned_cols=97 Identities=11% Similarity=0.127 Sum_probs=75.6
Q ss_pred hhHHHhhcCCChhhHHHHHHHHHH----cCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeecc
Q 002698 523 FGAYIISMATAPSDVLAVELLQRE----CRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSD 597 (891)
Q Consensus 523 ~~~yIISmt~s~sDvL~vl~L~k~----~Gl~-~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSD 597 (891)
+..+++.|++++.|+-.+.-+.+. .|.. ..+.|+|+.||...+.|+.+|+.. . .+.--+++|-.|
T Consensus 86 ~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a---~-------~rv~~l~~G~~D 155 (288)
T TIGR01588 86 VDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARA---S-------KRLMGIALGAED 155 (288)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhc---C-------CcceEEEeCHHH
Confidence 345999999999999999755554 3332 367899999999999999988841 1 245669999988
Q ss_pred CCCchhhHh--HHHHHHHHHHHHHHHHHHhCCeE
Q 002698 598 SGKDAGRLS--AAWQLYKTQEELVKVAKQYGVKL 629 (891)
Q Consensus 598 S~KDgG~la--s~W~Ly~Aq~~L~~v~~~~gV~l 629 (891)
=.-|-|.-. ..-+++.+..+++..|+.+|+..
T Consensus 156 ls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~ 189 (288)
T TIGR01588 156 YVTDMKTSRSPDGTELFYARCAILHAARAAGIAA 189 (288)
T ss_pred HHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCc
Confidence 777777544 22369999999999999999875
No 20
>PRK06247 pyruvate kinase; Provisional
Probab=87.14 E-value=1.8 Score=51.28 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=73.5
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhH
Q 002698 526 YIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605 (891)
Q Consensus 526 yIISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~l 605 (891)
+-+|..++++||.++--+.. ..+.|++-.||.+.++|.++|++. .=.||+|-.|=+-.-|+
T Consensus 190 ia~SFVr~a~Di~~~r~~l~-----~~~~iiaKIEt~eav~nldeI~~~-------------~DgImVaRGDLgve~g~- 250 (476)
T PRK06247 190 VALSFVQRPEDVEEVRKIIG-----GRVPVMAKIEKPQAIDRLEAIVEA-------------SDAIMVARGDLGVEVPL- 250 (476)
T ss_pred EEECCCCCHHHHHHHHHHhh-----hcCeEEEEECCHHHHHhHHHHHHH-------------cCEEEEccchhccccCH-
Confidence 45799999999999866552 257799999999999999999998 23599999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002698 606 SAAWQLYKTQEELVKVAKQYGVKLTM 631 (891)
Q Consensus 606 as~W~Ly~Aq~~L~~v~~~~gV~l~~ 631 (891)
..+-.+|+++.+.|+++|..+..
T Consensus 251 ---~~v~~~qk~ii~~~~~~gkpvI~ 273 (476)
T PRK06247 251 ---EQVPLIQKRIIRAARRAGKPVVV 273 (476)
T ss_pred ---HHHHHHHHHHHHHHHHhCCCEEE
Confidence 88999999999999999998876
No 21
>PRK06354 pyruvate kinase; Provisional
Probab=86.96 E-value=1.8 Score=52.62 Aligned_cols=87 Identities=22% Similarity=0.289 Sum_probs=74.5
Q ss_pred HHhhcCCChhhHHHHHHHHH-HcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhh
Q 002698 526 YIISMATAPSDVLAVELLQR-ECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGR 604 (891)
Q Consensus 526 yIISmt~s~sDvL~vl~L~k-~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~ 604 (891)
+-+|+.++++||.++--+.. ..| ..+.|+.-.||.+.|+|.++|++. .=.||+|-.|=+-.-|
T Consensus 195 ia~SFVr~~~dv~~~r~~l~~~~~--~~~~iiaKIEt~eav~nldeI~~~-------------~DgImVaRGDLgve~g- 258 (590)
T PRK06354 195 IALSFVRNPSDVLEIRELIEEHNG--KHIPIIAKIEKQEAIDNIDAILEL-------------CDGLMVARGDLGVEIP- 258 (590)
T ss_pred EEEcCCCCHHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHh-------------cCEEEEccchhhcccC-
Confidence 44799999999999976663 344 367899999999999999999988 2259999999999998
Q ss_pred HhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002698 605 LSAAWQLYKTQEELVKVAKQYGVKLTM 631 (891)
Q Consensus 605 las~W~Ly~Aq~~L~~v~~~~gV~l~~ 631 (891)
...+..+|+++.+.|+++|..+..
T Consensus 259 ---~e~v~~~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 259 ---AEEVPLLQKRLIKKANRLGKPVIT 282 (590)
T ss_pred ---cHHHHHHHHHHHHHHHHcCCCEEE
Confidence 778888999999999999998875
No 22
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=77.12 E-value=2.1 Score=46.59 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=55.2
Q ss_pred CCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhHh-HH-HHHHHHHHHHHHHHHHhCCeE
Q 002698 552 PLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLS-AA-WQLYKTQEELVKVAKQYGVKL 629 (891)
Q Consensus 552 ~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~la-s~-W~Ly~Aq~~L~~v~~~~gV~l 629 (891)
.+-|+|+.||.+.++|+++|+.. .+.=-||+|-+|=+.+-|... .. -++..|-.++.+.|.++|+..
T Consensus 139 ~~~vi~~IEt~~av~n~~eI~a~-----------~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~ 207 (249)
T TIGR02311 139 EICVLLQVETREALDNLEEIAAV-----------EGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAA 207 (249)
T ss_pred ceEEEEEecCHHHHHHHHHHHCC-----------CCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCce
Confidence 46699999999999999999952 345679999999888888633 22 367778888999999999977
Q ss_pred EE
Q 002698 630 TM 631 (891)
Q Consensus 630 ~~ 631 (891)
-+
T Consensus 208 Gi 209 (249)
T TIGR02311 208 GI 209 (249)
T ss_pred ee
Confidence 43
No 23
>PRK06739 pyruvate kinase; Validated
Probab=74.54 E-value=14 Score=42.38 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=84.6
Q ss_pred HHHHHhCCCcchhHHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEE
Q 002698 512 FHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEV 591 (891)
Q Consensus 512 f~~i~~~~~~a~~~yIISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeV 591 (891)
++.....+-+.+ -+|..++++||.++--+.+..|. ..+.|+.=.||.+.++|-++|++.- --|
T Consensus 171 i~f~~~~~vD~i---a~SFVr~~~Dv~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~eI~~~s-------------Dgi 233 (352)
T PRK06739 171 IQFLLEEDVDFI---ACSFVRKPSHIKEIRDFIQQYKE-TSPNLIAKIETMEAIENFQDICKEA-------------DGI 233 (352)
T ss_pred HHHHHHcCCCEE---EECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHHHHHhc-------------CEE
Confidence 444444544433 35999999999999888888764 4678999999999999999999983 458
Q ss_pred EEeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch
Q 002698 592 MIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT 646 (891)
Q Consensus 592 MlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGSvgRGGGPt 646 (891)
|+.--|=+-. ..-+.+-.+|+++.+.|+++|..+..===-=.|+-...=||
T Consensus 234 mVARGDLgve----~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PT 284 (352)
T PRK06739 234 MIARGDLGVE----LPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPT 284 (352)
T ss_pred EEECcccccc----cCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCC
Confidence 9987765555 45579999999999999999998875332223333333343
No 24
>PRK14725 pyruvate kinase; Provisional
Probab=70.56 E-value=13 Score=45.42 Aligned_cols=108 Identities=20% Similarity=0.193 Sum_probs=84.1
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhH
Q 002698 526 YIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605 (891)
Q Consensus 526 yIISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~l 605 (891)
+-+|..++++||..+.-+.++.|. ..+.|+.=.||.+.++|-++|+..-..++ ---|||.-=|=+-..|+
T Consensus 448 ValSFVrs~~DV~~lr~~L~~~g~-~~~~IiaKIEt~~av~nL~eIl~~am~~~--------~DGIMIARGDLgvEi~~- 517 (608)
T PRK14725 448 VALSFVRSPEDVRLLLDALEKLGA-DDLGVVLKIETRRAFENLPRILLEAMRHP--------RFGVMIARGDLAVEVGF- 517 (608)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHHHHHhhccCC--------CcEEEEECCccccccCH-
Confidence 346999999999999888877765 46889999999999999999998754332 23488887776666554
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch
Q 002698 606 SAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT 646 (891)
Q Consensus 606 as~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGSvgRGGGPt 646 (891)
..+-..|++|...|+.+|+.++.===-=.|+-..+=||
T Consensus 518 ---e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PT 555 (608)
T PRK14725 518 ---ERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPS 555 (608)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCC
Confidence 68999999999999999999887444444555555565
No 25
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=68.72 E-value=7.6 Score=44.35 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=71.8
Q ss_pred HHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhh
Q 002698 525 AYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGR 604 (891)
Q Consensus 525 ~yIISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~ 604 (891)
-+-+|..++++||.++--+.++.| ..+.|+.=.||.+.++|-++|++.- =-||+.--| -|.
T Consensus 192 ~IalSFVrsa~dV~~lr~~l~~~~--~~~~iiaKIE~~~~v~nl~eI~~~s-------------DgimiaRGD----Lg~ 252 (348)
T PF00224_consen 192 FIALSFVRSAEDVKELRKILGEKG--KDIKIIAKIETKEAVENLDEILEAS-------------DGIMIARGD----LGV 252 (348)
T ss_dssp EEEETTE-SHHHHHHHHHHHTCTT--TTSEEEEEE-SHHHHHTHHHHHHHS-------------SEEEEEHHH----HHH
T ss_pred EEEecCCCchHHHHHHHHHhhhcC--cccceeeccccHHHHhhHHHHhhhc-------------CeEEEecCC----cce
Confidence 345799999999999988888777 5789999999999999999999872 258887765 444
Q ss_pred HhHHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002698 605 LSAAWQLYKTQEELVKVAKQYGVKLTMF 632 (891)
Q Consensus 605 las~W~Ly~Aq~~L~~v~~~~gV~l~~F 632 (891)
=..-..+..+|+.+.+.|+++|..+.+=
T Consensus 253 e~~~e~v~~~Qk~ii~~~~~~~kpvi~A 280 (348)
T PF00224_consen 253 EIPFEKVPIIQKRIIKKCNAAGKPVIVA 280 (348)
T ss_dssp HSTGGGHHHHHHHHHHHHHHHT-EEEEE
T ss_pred eeeHHHHHHHHHHHHHHHHHhCCCeeeh
Confidence 4555689999999999999999988863
No 26
>PLN02765 pyruvate kinase
Probab=61.25 E-value=31 Score=41.56 Aligned_cols=86 Identities=10% Similarity=0.124 Sum_probs=72.5
Q ss_pred HhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhHh
Q 002698 527 IISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLS 606 (891)
Q Consensus 527 IISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~la 606 (891)
-+|..++++||.++--+.+..|. ..+.|+.=.||.+.++|-++|++.- =-||+.--|=+-. .
T Consensus 225 a~SFVr~a~DI~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~eIi~~s-------------DgIMVARGDLGvE----i 286 (526)
T PLN02765 225 SLSYTRHAEDVREAREFLSSLGL-SQTQIFAKIENVEGLTHFDEILQEA-------------DGIILSRGNLGID----L 286 (526)
T ss_pred EECCCCCHHHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHHHHHhc-------------CEEEEecCccccc----c
Confidence 46999999999999888887774 4678999999999999999999983 3588887765544 4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEE
Q 002698 607 AAWQLYKTQEELVKVAKQYGVKLT 630 (891)
Q Consensus 607 s~W~Ly~Aq~~L~~v~~~~gV~l~ 630 (891)
.-..+-.+|+++.+.|+++|..+.
T Consensus 287 p~e~vp~~QK~iI~~c~~~gKPVI 310 (526)
T PLN02765 287 PPEKVFLFQKAALYKCNMAGKPAV 310 (526)
T ss_pred CHHHhHHHHHHHHHHHHHhCCCeE
Confidence 567899999999999999998765
No 27
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=59.92 E-value=6.7 Score=43.53 Aligned_cols=100 Identities=20% Similarity=0.272 Sum_probs=76.0
Q ss_pred chhHHHhhcCCChhhHHHHHHHHHHcCCCCCCc-cccccCChHHHhchHHHHHHHhccHHHHhhcCCe-eEEEEeeccCC
Q 002698 522 SFGAYIISMATAPSDVLAVELLQRECRVKQPLR-VVPLFEKLADLEAAPASVARLFSIDWYRNRISGK-QEVMIGYSDSG 599 (891)
Q Consensus 522 a~~~yIISmt~s~sDvL~vl~L~k~~Gl~~~l~-VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~-qeVMlGYSDS~ 599 (891)
++...++.++++++|+..+-.+.....-.+++. +..++||..-+.|+.+|... .++ ..+++|=.|=.
T Consensus 80 ~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a-----------~~~l~~l~~Ga~Dl~ 148 (283)
T COG2301 80 AVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAA-----------SGRLVGLAFGANDLA 148 (283)
T ss_pred CCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcC-----------ccceeeeEecHHHHH
Confidence 377789999999999999877666444333444 89999999999999999876 334 66788877766
Q ss_pred CchhhHhHH---HHHHHHHHHHHHHHHHhCCeEEEecC
Q 002698 600 KDAGRLSAA---WQLYKTQEELVKVAKQYGVKLTMFHG 634 (891)
Q Consensus 600 KDgG~las~---W~Ly~Aq~~L~~v~~~~gV~l~~FHG 634 (891)
+|-|--.+. =.++-+...++..|+-+|+.. |+|
T Consensus 149 ~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a--~D~ 184 (283)
T COG2301 149 ADLGARRSPDGTDPLRYARAMIVLAARAAGLAA--IDG 184 (283)
T ss_pred HHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCc--ccc
Confidence 665543332 377888889999999999987 554
No 28
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=59.62 E-value=24 Score=33.65 Aligned_cols=55 Identities=13% Similarity=0.340 Sum_probs=44.3
Q ss_pred CCeeEEEEeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCchhhhh
Q 002698 586 SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAI 650 (891)
Q Consensus 586 ~~~qeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGSvgRGGGPt~~ai 650 (891)
+-.+.+.+||.|+.-.. |......+.|.++.++....++|-|-..|. |+|-|.++
T Consensus 66 Gv~~~~~l~~~D~~~~~------~~~~~~~~~l~~~i~~~~p~~V~t~~~~~~----gH~DH~~~ 120 (128)
T PF02585_consen 66 GVENVIFLDFPDGQLPG------WSWEELVRDLEDLIREFRPDVVFTPDPDDG----GHPDHRAV 120 (128)
T ss_dssp T-EEEEEEEECTTSCTC------HHHHHHHHHHHHHHHHH-ESEEEEE-STTS-----SHHHHHH
T ss_pred CCceEEEeecCCCCccc------ccHHHHHHHHHHHHHHcCCCEEEECCCCCC----CcHHHHHH
Confidence 33588999999999887 999999999999999998888888876666 89988864
No 29
>PLN02461 Probable pyruvate kinase
Probab=57.43 E-value=40 Score=40.61 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=73.5
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhH
Q 002698 526 YIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605 (891)
Q Consensus 526 yIISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~l 605 (891)
+-+|..++++||.++--+....|- .+.|+.=.||.+.++|-++|++. -=-||+..-|=+-.-|
T Consensus 211 ia~SFVr~a~DV~~~r~~l~~~~~--~~~IiAKIE~~~av~nl~eIi~~-------------sDgIMVARGDLGvEip-- 273 (511)
T PLN02461 211 IALSFVRKGSDLVEVRKVLGEHAK--SILLISKVENQEGLDNFDDILAE-------------SDAFMVARGDLGMEIP-- 273 (511)
T ss_pred EEECCCCCHHHHHHHHHHHHhCCC--CCCEEEEECCHHHHHHHHHHHHh-------------cCEEEEeccccccccC--
Confidence 456999999999999887776553 67899999999999999999998 2369999887766655
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002698 606 SAAWQLYKTQEELVKVAKQYGVKLTM 631 (891)
Q Consensus 606 as~W~Ly~Aq~~L~~v~~~~gV~l~~ 631 (891)
-..+..+|+++.+.|+++|..+..
T Consensus 274 --~e~vp~~Qk~II~~c~~~gkPVIv 297 (511)
T PLN02461 274 --IEKIFLAQKMMIYKCNLAGKPVVT 297 (511)
T ss_pred --HHHhHHHHHHHHHHHHHcCCCeEE
Confidence 467899999999999999998875
No 30
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=54.95 E-value=24 Score=42.41 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=69.2
Q ss_pred chhHHHhhcCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeec
Q 002698 522 SFGAYIISMATAPSDVLAVELLQ----RECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYS 596 (891)
Q Consensus 522 a~~~yIISmt~s~sDvL~vl~L~----k~~Gl~-~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYS 596 (891)
.+ -+.|..++++.|+-.+--+. +..|+. .++.+.+|.||+..+-|+.+|+..+ |.|+ .-+++|.-
T Consensus 185 gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~al------r~Rl---~gLn~G~~ 254 (511)
T cd00727 185 GP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYEL------RDHS---AGLNCGRW 254 (511)
T ss_pred Cc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhc------cCce---EEEEcChH
Confidence 45 67899999999998763333 356775 6899999999999999999999775 3344 33677776
Q ss_pred cCCCchhhHh---------------HHHHHHHH-HHHHHHHHHHhCCe
Q 002698 597 DSGKDAGRLS---------------AAWQLYKT-QEELVKVAKQYGVK 628 (891)
Q Consensus 597 DS~KDgG~la---------------s~W~Ly~A-q~~L~~v~~~~gV~ 628 (891)
|=.+|-|.-. -+=.+..| +..++..|+++|+.
T Consensus 255 Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~ 302 (511)
T cd00727 255 DYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAH 302 (511)
T ss_pred HHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 6555443221 11145666 66699999999974
No 31
>PRK09255 malate synthase; Validated
Probab=54.48 E-value=26 Score=42.21 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=67.7
Q ss_pred HHHhhcCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCC
Q 002698 525 AYIISMATAPSDVLAVELLQ----RECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSG 599 (891)
Q Consensus 525 ~yIISmt~s~sDvL~vl~L~----k~~Gl~-~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~ 599 (891)
.++|..++++.|+-.+--+. +..|+. .++.+.+|.||+..+-|+.+|+..+ |.|+ .-+++|.-|=.
T Consensus 208 ~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~------r~Rl---~gLn~G~~Dy~ 278 (531)
T PRK09255 208 YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYEL------REHI---AGLNCGRWDYI 278 (531)
T ss_pred EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhc------cCce---EEEEcChHHhh
Confidence 78999999999998774333 356775 6899999999999999999999775 3444 33677776655
Q ss_pred Cchh--------hH-------hHHHHHHHH-HHHHHHHHHHhCCe
Q 002698 600 KDAG--------RL-------SAAWQLYKT-QEELVKVAKQYGVK 628 (891)
Q Consensus 600 KDgG--------~l-------as~W~Ly~A-q~~L~~v~~~~gV~ 628 (891)
.|-+ ++ +-+=.+..| +..++..|+++|+.
T Consensus 279 ~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~ 323 (531)
T PRK09255 279 FSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAH 323 (531)
T ss_pred hhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 4322 11 111145566 66777999999963
No 32
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=53.89 E-value=20 Score=43.13 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=68.1
Q ss_pred HHHhhcCCChhhHHHHHHH----HHHcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCC
Q 002698 525 AYIISMATAPSDVLAVELL----QRECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSG 599 (891)
Q Consensus 525 ~yIISmt~s~sDvL~vl~L----~k~~Gl~-~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~ 599 (891)
-++|..++|+.|+..+--+ .+..|+. .++.++||.||+..+.|+.+|+..+= .|+ .-+.+|.-|=.
T Consensus 187 yi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr------~rv---~gLn~G~~Dy~ 257 (511)
T cd00480 187 YFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELR------DHS---AGLNCGRWDYI 257 (511)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhcc------Ccc---eeeecChHHHH
Confidence 4578999999998887433 3356775 57999999999999999999996641 233 23666766655
Q ss_pred CchhhH-----------------hHHHHHHHHHHHHHHHHHHhCCeE
Q 002698 600 KDAGRL-----------------SAAWQLYKTQEELVKVAKQYGVKL 629 (891)
Q Consensus 600 KDgG~l-----------------as~W~Ly~Aq~~L~~v~~~~gV~l 629 (891)
.|-|.. ++-| ++-.+..++..|+++|+..
T Consensus 258 ~sli~~~~~~~~~~~pd~~~~~m~~~~-l~ay~~~lv~aa~a~G~~A 303 (511)
T cd00480 258 FSEIKTFRNHPDFVLPDRAKVTMTSPF-MRAYEKLLVKTCHRRGAHA 303 (511)
T ss_pred HHhccccccCccccCCcccccccccHH-HHHHHHHHHHHHHHcCCCc
Confidence 555332 2233 5556778999999999975
No 33
>PTZ00066 pyruvate kinase; Provisional
Probab=53.58 E-value=43 Score=40.33 Aligned_cols=87 Identities=16% Similarity=0.246 Sum_probs=73.5
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhH
Q 002698 526 YIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605 (891)
Q Consensus 526 yIISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~l 605 (891)
+-+|..++++||.++--+.++.|- .+.|+.=.||.+.++|-++|++.- =-||+..-|=+-.
T Consensus 227 IalSFVr~a~DI~~~r~~l~~~g~--~~~IiAKIE~~~av~NldeIl~~s-------------DGIMVARGDLGvE---- 287 (513)
T PTZ00066 227 IALSFVQSADDVRLCRQLLGERGR--HIKIIPKIENIEGLINFDEILAES-------------DGIMVARGDLGME---- 287 (513)
T ss_pred EEECCCCCHHHHHHHHHHHHhCCC--CceEEEEECCHHHHHHHHHHHHhc-------------CEEEEEccccccc----
Confidence 457999999999999888887774 678999999999999999999983 4589988765555
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002698 606 SAAWQLYKTQEELVKVAKQYGVKLTM 631 (891)
Q Consensus 606 as~W~Ly~Aq~~L~~v~~~~gV~l~~ 631 (891)
..-..+-.+|+++.+.|+++|..+..
T Consensus 288 ip~e~vp~~QK~II~~c~~~gkPVIv 313 (513)
T PTZ00066 288 IPPEKVFLAQKMMISKCNVAGKPVIT 313 (513)
T ss_pred cChHHcchHHHHHHHHHHHhCCCEEE
Confidence 44577899999999999999988775
No 34
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=52.17 E-value=15 Score=42.77 Aligned_cols=73 Identities=32% Similarity=0.535 Sum_probs=41.6
Q ss_pred CCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEE----eeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCC
Q 002698 552 PLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMI----GYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGV 627 (891)
Q Consensus 552 ~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMl----GYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV 627 (891)
||++|.--.+...|++.=..|.. .|+--||+ |-=.+..+ --=+|+-|+ +|.+++++.|.
T Consensus 5 PLd~v~~~~~~~~~~~~L~~LK~-----------~GV~GVmvdvWWGiVE~~~p---~~ydWs~Y~---~l~~~vr~~GL 67 (402)
T PF01373_consen 5 PLDTVTDDNDWNALEAQLRALKS-----------AGVDGVMVDVWWGIVEGEGP---QQYDWSGYR---ELFEMVRDAGL 67 (402)
T ss_dssp -TTSSCTTSECHHHHHHHHHHHH-----------TTEEEEEEEEEHHHHTGSST---TB---HHHH---HHHHHHHHTT-
T ss_pred eeeeecCCCcHHHHHHHHHHHHH-----------cCCcEEEEEeEeeeeccCCC---CccCcHHHH---HHHHHHHHcCC
Confidence 56666655555544443333332 36777777 32222222 234788886 68889999999
Q ss_pred eEEE---ecCCCCCCCC
Q 002698 628 KLTM---FHGRGGTVGR 641 (891)
Q Consensus 628 ~l~~---FHGRGGSvgR 641 (891)
|+.. ||+.||.||-
T Consensus 68 k~~~vmsfH~cGgNvgD 84 (402)
T PF01373_consen 68 KLQVVMSFHQCGGNVGD 84 (402)
T ss_dssp EEEEEEE-S-BSSSTTS
T ss_pred eEEEEEeeecCCCCCCC
Confidence 9877 9999999985
No 35
>PLN02762 pyruvate kinase complex alpha subunit
Probab=49.49 E-value=72 Score=38.49 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=74.1
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhH
Q 002698 526 YIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605 (891)
Q Consensus 526 yIISmt~s~sDvL~vl~L~k~~Gl~~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~l 605 (891)
.-+|..++++||.++--+.++.|....+.|+.=.||.+.++|-++|++. -=-||+.--|=+-.-+
T Consensus 220 ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~-------------sDgiMVARGDLGvEip-- 284 (509)
T PLN02762 220 IAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNLEEIIRA-------------SDGAMVARGDLGAQIP-- 284 (509)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHHHHHHHh-------------cCEEEEecCccccccC--
Confidence 4569999999999998888777754467899999999999999999987 2358998877665554
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002698 606 SAAWQLYKTQEELVKVAKQYGVKLTM 631 (891)
Q Consensus 606 as~W~Ly~Aq~~L~~v~~~~gV~l~~ 631 (891)
-..+-.+|+++...|+++|..+..
T Consensus 285 --~e~vp~~QK~II~~c~~~gKPVIv 308 (509)
T PLN02762 285 --LEQVPSVQEKIVRLCRQLNKPVIV 308 (509)
T ss_pred --HHHhHHHHHHHHHHHHHhCCCEEE
Confidence 578999999999999999988775
No 36
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=48.03 E-value=20 Score=42.91 Aligned_cols=95 Identities=11% Similarity=0.036 Sum_probs=68.0
Q ss_pred HHHhhcCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCC
Q 002698 525 AYIISMATAPSDVLAVELLQ----RECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSG 599 (891)
Q Consensus 525 ~yIISmt~s~sDvL~vl~L~----k~~Gl~-~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~ 599 (891)
.+.|...+++.|+-.+--+. +..|+. .++.+.+|.||+-.+-|+.+|+..+ |.|+ .-+.+|.-|=.
T Consensus 188 ~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~EIa~al------r~Rl---~gLn~G~~Dy~ 258 (511)
T TIGR01344 188 YFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDEILYEL------REHI---SGLNCGRWDYI 258 (511)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHHHHHhc------cCce---eEEEcChHHhh
Confidence 67899999999988763332 345775 6799999999999999999999876 3444 34778888877
Q ss_pred Cchh--------hHhHH-H------HHHHH-HHHHHHHHHHhCCe
Q 002698 600 KDAG--------RLSAA-W------QLYKT-QEELVKVAKQYGVK 628 (891)
Q Consensus 600 KDgG--------~las~-W------~Ly~A-q~~L~~v~~~~gV~ 628 (891)
++-+ ..... . .+..| ++.++..|+++|+.
T Consensus 259 ~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~ 303 (511)
T TIGR01344 259 FSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAH 303 (511)
T ss_pred hhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCC
Confidence 3322 22111 1 45666 66777999999973
No 37
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=46.09 E-value=16 Score=27.65 Aligned_cols=18 Identities=11% Similarity=0.088 Sum_probs=16.4
Q ss_pred HHHHHHHhccHHHHhhcC
Q 002698 569 PASVARLFSIDWYRNRIS 586 (891)
Q Consensus 569 ~~il~~ll~~p~yr~~l~ 586 (891)
..||..+-.+|.||+||+
T Consensus 7 gqimk~yaadpeyrkh~~ 24 (38)
T PF02526_consen 7 GQIMKAYAADPEYRKHLN 24 (38)
T ss_pred hHHHHHHhcCHHHHHHHH
Confidence 579999999999999993
No 38
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=45.65 E-value=30 Score=42.18 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=73.8
Q ss_pred hhHHHhhcCCChhhHHHHHHHHHHcC-------CC--CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEE
Q 002698 523 FGAYIISMATAPSDVLAVELLQRECR-------VK--QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMI 593 (891)
Q Consensus 523 ~~~yIISmt~s~sDvL~vl~L~k~~G-------l~--~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMl 593 (891)
--..++-|.++++++.++.-++++++ .. ..+.|.+..||+..+.+++.|++. .--|+|
T Consensus 384 ~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~-------------vDf~sI 450 (565)
T TIGR01417 384 KLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKE-------------VDFFSI 450 (565)
T ss_pred CCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhh-------------CCEEEE
Confidence 34568999999999999988888643 21 468899999999999999998872 333555
Q ss_pred eeccCCC-----c-----hhh--HhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCC
Q 002698 594 GYSDSGK-----D-----AGR--LSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGG 637 (891)
Q Consensus 594 GYSDS~K-----D-----gG~--las~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGG 637 (891)
|..|=+- | -|+ -.-.=++.++-.++++.|+++|+.+.+.+.-+|
T Consensus 451 GtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~ 506 (565)
T TIGR01417 451 GTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAG 506 (565)
T ss_pred ChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCC
Confidence 5555333 1 121 122347888999999999999999876554443
No 39
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=45.35 E-value=20 Score=38.55 Aligned_cols=92 Identities=28% Similarity=0.305 Sum_probs=69.0
Q ss_pred cccCChHHHhch-HHHHHHHhccHHHHhhcCCeeEEE----EeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002698 557 PLFEKLADLEAA-PASVARLFSIDWYRNRISGKQEVM----IGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (891)
Q Consensus 557 PLFETi~DL~~a-~~il~~ll~~p~yr~~l~~~qeVM----lGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~ 631 (891)
-.+||..|+++- -.|.+.|.+++...+|+. .+-|| +||-|-++=--.+.+|=+| +|.++..+.||+..+
T Consensus 12 l~~e~~~~se~~p~~vy~~l~~D~ev~A~l~-maNv~av~RlgYNDHG~vHa~Iva~~Al-----~i~~lL~~~Gv~ps~ 85 (269)
T COG3294 12 LIEETLADSEAFPKDVYELLLNDEEVQAYLK-MANVMAVGRLGYNDHGPVHARIVANSAL-----AIYKLLLEKGVKPSG 85 (269)
T ss_pred cccccchhhhhchHHHHHHHhcCHHHHHHHH-HhhhhhhhhhcccCCCceeeeeccchHH-----HHHHHHHhcCCCccc
Confidence 368999999999 589999999999999993 12233 8999999988888887665 678888999999876
Q ss_pred e--------------------cCCCCCCCCCCCchhhhhhcCC
Q 002698 632 F--------------------HGRGGTVGRGGGPTHLAILSQP 654 (891)
Q Consensus 632 F--------------------HGRGGSvgRGGGPt~~ai~aqP 654 (891)
. |-=|-||-|--++.|-+.++.+
T Consensus 86 v~dg~gd~eD~~vivlLga~LHDIGnsVHRd~H~~~sa~La~~ 128 (269)
T COG3294 86 VTDGVGDEEDSPVIVLLGAYLHDIGNSVHRDDHELYSAVLALD 128 (269)
T ss_pred ccccCCchhhhhHHHHHHHHHHhccchhccccHHHHhHHHhHH
Confidence 4 4444455555555555555544
No 40
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=42.25 E-value=20 Score=39.51 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=56.6
Q ss_pred CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhHh--HHHHHHHHHHHHHHHHHHhCCe
Q 002698 551 QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLS--AAWQLYKTQEELVKVAKQYGVK 628 (891)
Q Consensus 551 ~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~la--s~W~Ly~Aq~~L~~v~~~~gV~ 628 (891)
..+-|++..||.+.++|+.+|+.. .+.-.|++|=.|=+.+-|+.. -.=++..|-+++.+.|+++|+.
T Consensus 144 ~~~~vi~qiEt~~a~~n~~~I~~~-----------~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~ 212 (267)
T PRK10128 144 DSLCLLVQVESKTALDNLDEILDV-----------EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKA 212 (267)
T ss_pred cccEEEEEECCHHHHHhHHHHhCC-----------CCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCe
Confidence 467789999999999999999853 467789999998887777532 1235667999999999999998
Q ss_pred EEEe
Q 002698 629 LTMF 632 (891)
Q Consensus 629 l~~F 632 (891)
+-+|
T Consensus 213 ~G~~ 216 (267)
T PRK10128 213 AGFL 216 (267)
T ss_pred EEEc
Confidence 7543
No 41
>PLN00197 beta-amylase; Provisional
Probab=38.47 E-value=28 Score=41.88 Aligned_cols=32 Identities=44% Similarity=0.838 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCC
Q 002698 608 AWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGRG 642 (891)
Q Consensus 608 ~W~Ly~Aq~~L~~v~~~~gV~l~~---FHGRGGSvgRG 642 (891)
+|+=|+ +|.++++++|.|+.. ||..||.||-.
T Consensus 162 dWsgY~---~L~~mvr~~GLKlq~VmSFHqCGGNVGD~ 196 (573)
T PLN00197 162 NWGGYN---ELLEMAKRHGLKVQAVMSFHQCGGNVGDS 196 (573)
T ss_pred CcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCc
Confidence 788886 789999999999875 99999998864
No 42
>PLN02803 beta-amylase
Probab=38.09 E-value=29 Score=41.61 Aligned_cols=33 Identities=42% Similarity=0.832 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCC
Q 002698 608 AWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGRGG 643 (891)
Q Consensus 608 ~W~Ly~Aq~~L~~v~~~~gV~l~~---FHGRGGSvgRGG 643 (891)
+|+=|+ +|.++++++|.|+.. ||..||.||-.-
T Consensus 142 dWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~ 177 (548)
T PLN02803 142 NWEGYA---ELVQMVQKHGLKLQVVMSFHQCGGNVGDSC 177 (548)
T ss_pred CcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 788886 789999999999875 999999998743
No 43
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=37.89 E-value=53 Score=41.72 Aligned_cols=93 Identities=18% Similarity=0.145 Sum_probs=70.7
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCC---CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCC--
Q 002698 526 YIISMATAPSDVLAVELLQRECRVK---QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGK-- 600 (891)
Q Consensus 526 yIISmt~s~sDvL~vl~L~k~~Gl~---~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~K-- 600 (891)
.++-|.+++.++.++.-.++..|+. ..+.|....||++.+.++++|+.. ..-|+||-.|=+-
T Consensus 633 Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~-------------vDfisIGtnDLtq~~ 699 (782)
T TIGR01418 633 VMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKE-------------FDGFSIGSNDLTQLT 699 (782)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHh-------------CCEEEECchHHHHHH
Confidence 7899999999999998888888874 237899999999999999999976 2335555544332
Q ss_pred --------chhhHh--HHHHHHHHHHHHHHHHHHhCCeEEE
Q 002698 601 --------DAGRLS--AAWQLYKTQEELVKVAKQYGVKLTM 631 (891)
Q Consensus 601 --------DgG~la--s~W~Ly~Aq~~L~~v~~~~gV~l~~ 631 (891)
..|.+- -+=++.++-+++.+.|+++|+.+.+
T Consensus 700 lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgi 740 (782)
T TIGR01418 700 LGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGI 740 (782)
T ss_pred hCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 112111 1236888999999999999999876
No 44
>KOG3831 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.71 E-value=28 Score=34.89 Aligned_cols=48 Identities=31% Similarity=0.534 Sum_probs=39.6
Q ss_pred CChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhHhHHHHHHHHHHHHHHH
Q 002698 560 EKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKV 621 (891)
Q Consensus 560 ETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~v 621 (891)
..-+||+|-|.-.-..+.|-+. |||-|..-.-++.|++-||++++.+.
T Consensus 61 dafedlenppaav~av~kn~~l--------------s~s~k~sal~t~~wsiikakrq~l~~ 108 (196)
T KOG3831|consen 61 DAFEDLENPPAAVLAVLKNRFL--------------SDSFKESALATACWSIIKAKRQLLKN 108 (196)
T ss_pred HHHHhccCChHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999877777766553 89999999999999999999998653
No 45
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=37.55 E-value=20 Score=41.56 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=43.6
Q ss_pred hhHHHhhcCCChhhHHHHHHHHHHcCCC----------------CCCccccccCChHHHhchHHHHHHHhccHHHHhhc
Q 002698 523 FGAYIISMATAPSDVLAVELLQRECRVK----------------QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRI 585 (891)
Q Consensus 523 ~~~yIISmt~s~sDvL~vl~L~k~~Gl~----------------~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l 585 (891)
-|.|.||..--.-.--.|.-|||++|+. ..|+|.|=|-++++|+.|-+++-.-...-...+.+
T Consensus 344 ~GGYFIsld~~~G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~la~~ekll 422 (425)
T PF12897_consen 344 KGGYFISLDVLDGTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKLAAVEKLL 422 (425)
T ss_dssp SBSS-EEEEESTT-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEecCCChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678888776666666788899999983 47999999999999999999887665554444433
No 46
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=37.28 E-value=64 Score=41.06 Aligned_cols=93 Identities=20% Similarity=0.166 Sum_probs=70.4
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCC---CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeecc-----
Q 002698 526 YIISMATAPSDVLAVELLQRECRVK---QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSD----- 597 (891)
Q Consensus 526 yIISmt~s~sDvL~vl~L~k~~Gl~---~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSD----- 597 (891)
.++-|-++++++.++.-.+|..|+. ..+.|.+..||++.+.++++|+.. + .-|+||-.|
T Consensus 640 ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~-v------------Dfi~IGtnDLtq~~ 706 (795)
T PRK06464 640 VMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEY-F------------DGFSIGSNDLTQLT 706 (795)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHh-C------------CEEEECchHHHHHH
Confidence 7899999999999999888888874 368899999999999999999976 1 223444333
Q ss_pred -----CCCchhhHh--HHHHHHHHHHHHHHHHHHhCCeEEE
Q 002698 598 -----SGKDAGRLS--AAWQLYKTQEELVKVAKQYGVKLTM 631 (891)
Q Consensus 598 -----S~KDgG~la--s~W~Ly~Aq~~L~~v~~~~gV~l~~ 631 (891)
.|..-|.+- -+=++.++-+++.+.|+++|+.+.+
T Consensus 707 lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgi 747 (795)
T PRK06464 707 LGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGI 747 (795)
T ss_pred hCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 222222221 1237888999999999999999876
No 47
>PLN02801 beta-amylase
Probab=36.26 E-value=32 Score=41.02 Aligned_cols=34 Identities=32% Similarity=0.772 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEE---EecCCCCCCCCCC
Q 002698 607 AAWQLYKTQEELVKVAKQYGVKLT---MFHGRGGTVGRGG 643 (891)
Q Consensus 607 s~W~Ly~Aq~~L~~v~~~~gV~l~---~FHGRGGSvgRGG 643 (891)
=+|+=|+ +|.++++++|.|+. =||..||.||-.-
T Consensus 71 YdWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~ 107 (517)
T PLN02801 71 YDWSAYR---SLFELVQSFGLKIQAIMSFHQCGGNVGDAV 107 (517)
T ss_pred cCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 3788876 68899999999985 4999999998763
No 48
>PLN02905 beta-amylase
Probab=35.07 E-value=34 Score=41.78 Aligned_cols=34 Identities=35% Similarity=0.694 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCC
Q 002698 607 AAWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGRGG 643 (891)
Q Consensus 607 s~W~Ly~Aq~~L~~v~~~~gV~l~~---FHGRGGSvgRGG 643 (891)
=+|+=|+ +|.++++++|.|+.. ||..||.||-.-
T Consensus 320 YdWsgY~---~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 320 YNWNGYK---RLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 3788886 789999999999875 999999988654
No 49
>PLN02705 beta-amylase
Probab=34.14 E-value=36 Score=41.42 Aligned_cols=32 Identities=31% Similarity=0.748 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCC
Q 002698 607 AAWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGR 641 (891)
Q Consensus 607 s~W~Ly~Aq~~L~~v~~~~gV~l~~---FHGRGGSvgR 641 (891)
=+|+=|+ +|.++++++|.|+.. ||..||.||-
T Consensus 302 YdWsgY~---~L~~mvr~~GLKlqvVmSFHqCGGNVGD 336 (681)
T PLN02705 302 YVWSGYR---ELFNIIREFKLKLQVVMAFHEYGGNASG 336 (681)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEeeccCCCCCC
Confidence 3788886 789999999998865 9999998883
No 50
>PLN02161 beta-amylase
Probab=33.64 E-value=38 Score=40.48 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=45.6
Q ss_pred CeeEEEE----eeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCCCchhhhhhcCCCCccc
Q 002698 587 GKQEVMI----GYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGRGGGPTHLAILSQPPDTIH 659 (891)
Q Consensus 587 ~~qeVMl----GYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~---FHGRGGSvgRGGGPt~~ai~aqP~gs~~ 659 (891)
|+--||+ |.=-+..++ -=+|+-|+ +|.++++++|.|+.. ||..||.||--.+ ...|....+
T Consensus 130 GVdGVmvDVWWGiVE~~~p~---~YdWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~------IpLP~WV~~ 197 (531)
T PLN02161 130 GVHGIAVEVWWGIVERFSPL---EFKWSLYE---ELFRLISEAGLKLHVALCFHSNMHLFGGKGG------ISLPLWIRE 197 (531)
T ss_pred CCCEEEEEeeeeeeecCCCC---cCCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCccC------ccCCHHHHh
Confidence 4444555 554433332 33798886 689999999999875 9999999987655 335544332
Q ss_pred -----Cceeeecccc
Q 002698 660 -----GSLRVTVQGE 669 (891)
Q Consensus 660 -----g~irvTeQGE 669 (891)
-.|-.|.|-.
T Consensus 198 ~g~~~pDi~ftDr~G 212 (531)
T PLN02161 198 IGDVNKDIYYRDKNG 212 (531)
T ss_pred hhccCCCceEEcCCC
Confidence 2455665543
No 51
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=26.74 E-value=1.2e+02 Score=28.99 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHhhcCCccch-HHHHHHHHHHHHHHHHHHHHhCC
Q 002698 817 RVTIDLVEMVFAKGDPGIAALYDKLLVSEELQ-PFGEKLRANYAETKSLLLQVCGA 871 (891)
Q Consensus 817 ~t~idnvem~LaKaD~~Ia~~Ya~l~~d~~~~-~i~~~i~~E~~~T~~~vl~itg~ 871 (891)
+.+.+.+.-.+...+-.|...|..++.||.+. .+...|+++. .+..+|..+..+
T Consensus 52 ~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~~~~-~Ae~Av~~~~~~ 106 (123)
T PF05524_consen 52 EQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIREGK-NAEYAVQEVIEE 106 (123)
T ss_dssp HHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 34444455556677889999999999999986 8999999998 777777766543
No 52
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=26.58 E-value=55 Score=38.17 Aligned_cols=131 Identities=22% Similarity=0.294 Sum_probs=84.8
Q ss_pred CccccccCChHHHhchHHHHHHH-hccHHHHhhcCCeeEEEEeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCC----
Q 002698 553 LRVVPLFEKLADLEAAPASVARL-FSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGV---- 627 (891)
Q Consensus 553 l~VvPLFETi~DL~~a~~il~~l-l~~p~yr~~l~~~qeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV---- 627 (891)
..+.++|.+..-.+-|..+.+-. + .=.|.+.=|- -.|-+.-.++|++++-
T Consensus 75 ~h~sn~~~~~~~~~la~~L~~~s~~-----------~d~vff~NSG--------------aEA~EaAiKlARk~~~~~~k 129 (404)
T COG4992 75 WHVSNLFYNEPQAELAEKLVELSPF-----------ADRVFFCNSG--------------AEANEAALKLARKYTGDPEK 129 (404)
T ss_pred hhcccccCChHHHHHHHHHHhhCcc-----------ccEEEEcCCc--------------HHHHHHHHHHHHHHcCCCCC
Confidence 44678888887777776665543 1 1224444333 2577888889999876
Q ss_pred -eEEE----ecCC-CCCCCCCCCchhhhhhc-CCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCC--
Q 002698 628 -KLTM----FHGR-GGTVGRGGGPTHLAILS-QPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMH-- 698 (891)
Q Consensus 628 -~l~~----FHGR-GGSvgRGGGPt~~ai~a-qP~gs~~g~irvTeQGEvI~~kyg~~~~A~r~Le~~~~a~l~~s~~-- 698 (891)
+++- |||| .|+++=||.|.++..-. +|| .+....||+.+-...-++--++|++..-+.
T Consensus 130 ~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~-------------g~~~vpfnDi~al~~ai~~~taAvivEPIQGE 196 (404)
T COG4992 130 SKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLP-------------GFRHVPFNDIEALEAAIDEDTAAVIVEPIQGE 196 (404)
T ss_pred cEEEEEcCCcCCccceeeeccCChhhccCCCCCCC-------------CceecCCCCHHHHHHHhccCeEEEEEecccCC
Confidence 3332 8999 69999999998886655 444 345688999988877777777777655443
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002698 699 -PPVSPKPEWRALMDEMAVIATKEYRSI 725 (891)
Q Consensus 699 -~~~~~~~~~~~~m~~ls~~s~~~Yr~l 725 (891)
.-.+++++|-....+|+ +.|-.|
T Consensus 197 gGV~~~~~~fl~~lr~lC----d~~g~L 220 (404)
T COG4992 197 GGVIPAPPEFLKALRELC----DEHGAL 220 (404)
T ss_pred CCCCCCCHHHHHHHHHHH----HHhCeE
Confidence 12344566654444443 345544
No 53
>PLN02626 malate synthase
Probab=25.41 E-value=1.5e+02 Score=36.02 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=63.0
Q ss_pred HHhhcCCChhhHHHHH----HHHHHcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccC--
Q 002698 526 YIISMATAPSDVLAVE----LLQRECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDS-- 598 (891)
Q Consensus 526 yIISmt~s~sDvL~vl----~L~k~~Gl~-~~l~VvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS-- 598 (891)
|.+..++++.|+-..- ...+..|+. ..|.+.+|.||+...-+..+|+-++ |.|+- -.+.|.=|=
T Consensus 215 fyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~el------r~r~a---gLn~GrwDyif 285 (551)
T PLN02626 215 FYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYEL------RDHSA---GLNCGRWDYIF 285 (551)
T ss_pred EeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHh------hhhee---eeecChHHHHh
Confidence 3678888888876652 233566885 6899999999999999999999875 23331 133333222
Q ss_pred ----------CC---chhhHhHHHHHHHH-HHHHHHHHHHhCCe
Q 002698 599 ----------GK---DAGRLSAAWQLYKT-QEELVKVAKQYGVK 628 (891)
Q Consensus 599 ----------~K---DgG~las~W~Ly~A-q~~L~~v~~~~gV~ 628 (891)
++ |...++-+...-+| .+.++.+|+++|+.
T Consensus 286 S~ik~l~~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~ 329 (551)
T PLN02626 286 SFVKTFRAHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVH 329 (551)
T ss_pred HHHHHhccCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCc
Confidence 12 55554445555555 55788899999864
No 54
>PF12133 Sars6: Open reading frame 6 from SARS coronavirus; InterPro: IPR022736 This entry represents small proteins, typically between 42 to 63 amino acids in length, which are uncharacterised.
Probab=25.31 E-value=24 Score=29.45 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=30.4
Q ss_pred HHHHHHhcCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHH
Q 002698 433 FLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKR 480 (891)
Q Consensus 433 li~~v~~FGfhla~LDiRQ~S~~H~~a~~ei~~~~g~~~y~~l~E~~r 480 (891)
||--+++||..+-.+||---|- +..+++.+.-.+|++|||+|-
T Consensus 15 li~im~sf~~a~~~~~i~i~s~-----~~~l~~~l~k~~ys~ld~ee~ 57 (62)
T PF12133_consen 15 LIIIMRSFRIAIWNIQIIISSI-----VRQLFNPLDKKNYSELDDEEP 57 (62)
T ss_pred HHHHHHHHHHHHHhHHhHHHHH-----HHHHhcccccccccccCcccc
Confidence 5566799999999999854433 455555444447999999763
No 55
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=24.88 E-value=2.1e+02 Score=30.46 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHHhCCCcchhHHHhhcCCChhhHHHHHHHHHHc
Q 002698 502 TEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQREC 547 (891)
Q Consensus 502 s~~~~e~l~~f~~i~~~~~~a~~~yIISmt~s~sDvL~vl~L~k~~ 547 (891)
+|...+++..++.+...|.+.+. |+.|+++.+|++.++-+.+++
T Consensus 131 tp~~~~l~~~~~~~~~~gaDivK--ia~~a~~~~D~~~ll~~~~~~ 174 (228)
T TIGR01093 131 TPSWEEIVERLEKALSYGADIVK--IAVMANSKEDVLTLLEITNKV 174 (228)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEE--EEeccCCHHHHHHHHHHHHHH
Confidence 45556678888888888776555 788999999999999887665
No 56
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=23.75 E-value=5.6e+02 Score=30.31 Aligned_cols=88 Identities=11% Similarity=0.151 Sum_probs=50.9
Q ss_pred CccchhhHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh--h-ccccccCCCCChHHHHHHHHHHHHHHhhhh
Q 002698 174 TQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAA--F-RTDEIRRSPPTPQDEMRAGMSYFHETIWKG 250 (891)
Q Consensus 174 TEa~Rrtvl~~~~~I~~lL~~~~~~~~~~~e~~~~~~~L~~~i~~L--W-~T~~iR~~kPtv~DE~~~~l~y~~~~l~~a 250 (891)
++..+.=+.+-++++...|++.....+|.+...+..+ .+-... | +--++|..+|+|.+-......+....+...
T Consensus 153 ~~~~~~Y~~~ql~~l~~~LEe~tG~kit~e~L~eaI~---n~nr~~~~~~e~~~l~~~~P~Pisg~dl~~~~~~~~~~~~ 229 (430)
T TIGR03191 153 TDARLDYVANQLHDGIEFVEKASGRKCDDELFIKAIK---NEMRSTARWADICALNKAKPAPLDEKTMYSLYVLAILHKS 229 (430)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCc
Confidence 4455556666677777777777777777765444333 333333 5 557889999988874432232333333333
Q ss_pred ---HHHHHHHHHHHHHh
Q 002698 251 ---VPKFLRRVDTALKN 264 (891)
Q Consensus 251 ---vP~~~~~l~~al~~ 264 (891)
..++++.|.+.+++
T Consensus 230 ~~~~~~~~~~L~~el~~ 246 (430)
T TIGR03191 230 SQWCADFMDELYEEVKD 246 (430)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 24556666665554
No 57
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=20.74 E-value=1.6e+02 Score=25.95 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=31.6
Q ss_pred CCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCC
Q 002698 598 SGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGR 635 (891)
Q Consensus 598 S~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~FHGR 635 (891)
.+|.-++.-+.|.-++-+..|.-.|+++||.+..-.-.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~yka~~~Gi~v~~v~~~ 79 (82)
T TIGR01766 42 KSKYLRRKLHQWSFRKLISKIKYKAEEYGIEVIEVNPA 79 (82)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHcCCeEEEeCcc
Confidence 34556677799999999999999999999999875533
No 58
>PLN02284 glutamine synthetase
Probab=20.17 E-value=1.5e+02 Score=34.12 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=35.5
Q ss_pred CCeeEEEEeeccCCCchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002698 586 SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMF 632 (891)
Q Consensus 586 ~~~qeVMlGYSDS~KDgG~las~W~Ly~Aq~~L~~v~~~~gV~l~~F 632 (891)
.++.||-++|+|. +.+.=.+-.++.-+.+||++||+..+|.
T Consensus 195 pGQ~Ei~l~~~d~------l~aAD~~~~~K~vvk~vA~~~Gl~ATFM 235 (354)
T PLN02284 195 PGQWEFQVGPVVG------ISAGDQLWVARYILERITEIAGVVVSFD 235 (354)
T ss_pred CCceEEEecCCcH------HHHHHHHHHHHHHHHHHHHHhCCEEEEc
Confidence 3799999999765 6777888888999999999999999974
Done!