BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002700
(890 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 71/127 (55%), Gaps = 3/127 (2%)
Query: 517 NARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTE 576
N R ++L N++ ++S + +L L L N+LQ + N F + +LK L L +L
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 577 LPVGI-AQLVSLQHLDLSESDISELPEEL-KALVNLKCLNLEWTRYLITIPRQLVSNLSR 634
LP G+ +L +L +L+L+ + + LP+ + L NL L+L + + L ++P + L++
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQ 182
Query: 635 LHVLRMF 641
L LR++
Sbjct: 183 LKDLRLY 189
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 516 ANARRISLMDNQITNLSEIPTCP-HLLT----LFLNKNKLQMIHNDFFQFMPSLKVLNLS 570
A+ +++ L N+ LS +P+ H LT L+LN NKLQ + F+ + +L+ L ++
Sbjct: 37 ADTKKLDLQSNK---LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93
Query: 571 HAELTELPVGI-AQLVSLQHLDLSESDISELPEEL-KALVNLKCLNLEWTRYLITIPRQL 628
+L LP+G+ QLV+L L L + + LP + +L L L+L + L ++P+ +
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGV 152
Query: 629 VSNLSRLHVLRMFGASNNVLDEASE 653
L+ L LR++ NN L E
Sbjct: 153 FDKLTSLKELRLY---NNQLKRVPE 174
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 539 HLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVG-IAQLVSLQHLDLSESDI 597
L L L N+LQ + F + SLK L L + +L +P G +L L+ L L + +
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 598 SELPE-ELKALVNLKCLNLE 616
+PE +L LK L L+
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQ 213
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 517 NARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTE 576
N R ++L N++ ++S + +L L L N+LQ + N F + +LK L L +L
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 577 LPVGI-AQLVSLQHLDLSESDISELPEEL-KALVNLKCLNLEWTRYLITIPRQLVSNLSR 634
LP G+ +L +L +L L + + LP+ + L NL L+L+ L ++P + L++
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD-NNQLQSLPEGVFDKLTQ 182
Query: 635 LHVLRM 640
L L +
Sbjct: 183 LKQLSL 188
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 520 RISLMDNQITNLSEIPT-----CPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAEL 574
+ + +D + +L +P L L+L NKLQ + N F + SL LNLS +L
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 575 TELPVGI-AQLVSLQHLDLSESDISELPEEL-KALVNLKCLNLEWTRYLITIPRQLVSNL 632
LP G+ +L L+ L L+ + + LP+ + L LK L L + L ++P + L
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRL 147
Query: 633 SRLHVL 638
+ L +
Sbjct: 148 TSLQYI 153
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 534 IPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGI-AQLVSLQHLDL 592
IPT +L L++N+ + + F + L LNL+ +LT LPVG+ +L L HL L
Sbjct: 38 IPTTTQVLHLYINQ--ITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL 95
Query: 593 SESDISELP----EELKALVNLKCLNLEW 617
+ + +P + LK+L ++ N W
Sbjct: 96 HINQLKSIPMGVFDNLKSLTHIYLFNNPW 124
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 491 IEKEKENFLVYAGVGLTEAPEVKGWANARRISLMDNQITNL--SEIPTCPHLLTLFLNKN 548
E E+ + Y+ LT P+ + +SL N I+ L +I L L L+ N
Sbjct: 28 FSNELESMVDYSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN 86
Query: 549 KLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELP--EELKA 606
+++ + F F L+ L++SH L + + SL+HLDLS +D LP +E
Sbjct: 87 RIRSLDFHVFLFNQDLEYLDVSHNRLQN--ISCCPMASLRHLDLSFNDFDVLPVCKEFGN 144
Query: 607 LVNLKCLNLEWTRY 620
L L L L ++
Sbjct: 145 LTKLTFLGLSAAKF 158
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 521 ISLMDNQITNLS-EIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPV 579
+ L + QI N+S I L L+LN N L + + + + +L+VL+LSH LT LP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPA 287
Query: 580 GIAQLVSLQHLDLSESDISELPEELKALVNLKCLNLE 616
+ L++ ++ ++ LP E L NL+ L +E
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 566 VLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPEELKALVNLKCLNLEWTRYLITIP 625
L+LS+ ++ + I + L L L+ + ++ELP E+K L NL+ L+L R L ++P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLP 286
Query: 626 RQLVS 630
+L S
Sbjct: 287 AELGS 291
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 534 IPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGI-AQLVSLQHLDL 592
IPT +L L+ N++ + F + L L+L + +LT LP G+ +L L L L
Sbjct: 36 IPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 93
Query: 593 SESDISELP----EELKALVNLKCLNLEW 617
+++ + +P + LK+L ++ LN W
Sbjct: 94 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW 122
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 534 IPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGI-AQLVSLQHLDL 592
IPT +L L+ N++ + F + L L+L + +LT LP G+ +L L L L
Sbjct: 28 IPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 593 SESDISELP----EELKALVNLKCLNLEW 617
+++ + +P + LK+L ++ LN W
Sbjct: 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 10/148 (6%)
Query: 505 GLTEAPEVKGWANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSL 564
G+T ++ N + L DNQIT+L+ + + L L+ N L+ + + S+
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSA--IAGLQSI 115
Query: 565 KVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPEELKALVNLKCLNLEWTRYLITI 624
K L+L+ ++T++ +A L +LQ L L + I+ + L L NL+ L++ +
Sbjct: 116 KTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNNQVNDLT 173
Query: 625 PRQLVSNLSRLHVLRMFGASNNVLDEAS 652
P ++NLS+L LR A +N + + S
Sbjct: 174 P---LANLSKLTTLR---ADDNKISDIS 195
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 71/144 (49%), Gaps = 11/144 (7%)
Query: 499 LVYAGVGLTEAPEVKGWANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFF 558
L +G L + G + + + L QIT+++ + +L L+L+ N++ I
Sbjct: 96 LELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--L 153
Query: 559 QFMPSLKVLNLSHAELTELP--VGIAQLVSLQHLDLSESDISELPEELKALVNLKCLNLE 616
+ +L+ L++ + ++ +L +++L +L+ D SDIS L +L NL ++L+
Sbjct: 154 AGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDIS----PLASLPNLIEVHLK 209
Query: 617 WTRYLITIPRQLVSNLSRLHVLRM 640
+ P ++NLS L ++ +
Sbjct: 210 DNQISDVSP---LANLSNLFIVTL 230
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 556 DFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSE-SDISELPEEL---------K 605
D Q L+ L L+ L LP IA L L+ L + +++ELPE L +
Sbjct: 121 DTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180
Query: 606 ALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEA 651
LVNL+ L LEWT + ++P ++NL L L++ + + L A
Sbjct: 181 GLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNSPLSALGPA 224
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 540 LLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISE 599
L L L N+++MI N F+P+L+ L+L + +L+ +P G+ L LQ + L ++I++
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK 278
Query: 600 L 600
+
Sbjct: 279 V 279
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 521 ISLMDNQITNL--SEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELP 578
+ L +N I+ L + HL L L NK+ IH F + L+ L +S L E+P
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 579 VGIAQLVSLQHLDLSESDISELPEEL-KALVNLKCLNL 615
+ SL L + ++ I ++P+ + L N+ C+ +
Sbjct: 119 PNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 37/160 (23%)
Query: 487 IACD---IEKEKENFLVYAGVGLTEAPEVKGWANARRISLMDNQITNLS--EIPTCPHLL 541
++CD I K L GLTEA + + L +N+IT +S ++ C +L
Sbjct: 28 LSCDRNGICKGSSGSLNSIPSGLTEA--------VKSLDLSNNRITYISNSDLQRCVNLQ 79
Query: 542 TLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELP 601
L L N + I D F + L SL+HLDLS + +S L
Sbjct: 80 ALVLTSNGINTIEEDSF-----------------------SSLGSLEHLDLSYNYLSNLS 116
Query: 602 EE-LKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRM 640
K L +L LNL Y L S+L++L +LR+
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 534 IPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGI-AQLVSLQHLDL 592
IPT +L L+ N++ + F + L L+L + +LT LP G+ +L L L L
Sbjct: 28 IPTTTQVLYLY--DNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 593 SESDISELP----EELKALVNLKCLNLEW 617
+++ + +P + L++L ++ LN W
Sbjct: 86 NDNQLKSIPRGAFDNLRSLTHIWLLNNPW 114
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGI-AQLVSLQHLDLSESDISELP 601
L+LN N++ + F + +L+ L + +LT +P G+ +L L LDL+++ + +P
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 602 ----EELKALVNLKCLNLEW 617
+ LK+L ++ N W
Sbjct: 98 RGAFDNLKSLTHIYLYNNPW 117
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 521 ISLMDNQITNL--SEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELP 578
+++ N I+ L S+I + L L ++ N++Q + F+F L+ L+LSH +L +
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-- 83
Query: 579 VGIAQLVSLQHLDLSESDISELP--EELKALVNLKCLNLEWTR 619
+ V+L+HLDLS + LP +E + LK L L T
Sbjct: 84 ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 34/139 (24%)
Query: 505 GLTEAPEVKGWANARRISLMDNQITNLS--EIPTCPHLLTLFLNKNKLQMIHNDFFQFMP 562
GLTEA + + L +N+IT +S ++ C +L L L N + I D F
Sbjct: 23 GLTEA--------VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF---- 70
Query: 563 SLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPEE-LKALVNLKCLNLEWTRYL 621
+ L SL+HLDLS + +S L K L +L LNL Y
Sbjct: 71 -------------------SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 622 ITIPRQLVSNLSRLHVLRM 640
L S+L++L +LR+
Sbjct: 112 TLGETSLFSHLTKLQILRV 130
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 503 GVGLTEAPEVKGWANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMP 562
G G+T V+ N + L DNQIT+L+ + + L L+ N L+ + +
Sbjct: 50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQ 107
Query: 563 SLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPEELKALVNLKCLNLEWTRYLI 622
S+K L+L+ ++T++ +A L +LQ L L + I+ + L L NL+ L++ +
Sbjct: 108 SIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSD 165
Query: 623 TIPRQLVSNLSRLHVLR 639
P ++NLS+L L+
Sbjct: 166 LTP---LANLSKLTTLK 179
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 540 LLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISE 599
L L L N+L ++ + F + LK L + +LTELP GI +L L HL L ++ +
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149
Query: 600 LPE 602
+P
Sbjct: 150 IPH 152
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGI-AQLVSLQHLDLSESDISELP 601
L+L+ N++ + F + +LK L L +L LPVG+ L L LDL + ++ LP
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 602 EEL-KALVNLK 611
+ LV+LK
Sbjct: 105 SAVFDRLVHLK 115
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 516 ANARRISLMDNQITNLSEIP--TCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAE 573
A+ ++ L + LS+ L L L+ N+LQ + F + L L L++ +
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 574 LTELPVGI-AQLVSLQHLDLSESDISELPEEL-KALVNLKCLNLEWTRYLITIPRQLVSN 631
L LP+G+ L L L L + + LP + L LK L L T L +IP
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDK 153
Query: 632 LSRLHVLRM 640
L+ L L +
Sbjct: 154 LTNLQTLSL 162
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 513 KGWANARRISLMDNQITNLSEIPTCPHLLTLF---LNKNKLQMIHNDFFQFMPSLKVLNL 569
+G N R ++L + NL +IP L+ L L+ N+L +I FQ + SL+ L L
Sbjct: 153 EGLVNLRYLNL---GMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
Query: 570 SHAELTELPV-GIAQLVSLQHLDLSESDISELPEEL 604
HA++ + L SL+ L+LS +++ LP +L
Sbjct: 210 MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 517 NARRISLMDN--QITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAEL 574
N R ++L +N Q+ HL L L+KN ++ I F +PSL L L L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 575 TELPVGIAQLVS-LQHLDLSESDISELP 601
T +P + +S L+ L L + I +P
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESIP 123
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 516 ANARRISLMDNQITNLSEIP--TCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAE 573
A+ ++ L + LS+ L L L+ N+LQ + F + L L L++ +
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 574 LTELPVGI-AQLVSLQHLDLSESDISELPEEL-KALVNLKCLNLEWTRYLITIPRQLVSN 631
L LP+G+ L L L L + + LP + L LK L L T L +IP
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDK 153
Query: 632 LSRLHVLRM 640
L+ L L +
Sbjct: 154 LTNLQTLSL 162
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 518 ARRISLMDNQITNLS--EIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELT 575
R + L N+I L+ E + PHL L LN+N + + F + +L+ L L L
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 576 ELPVGI-AQLVSLQHLDLSESDISELPEEL-KALVNLKCL 613
+P+G+ L +L LD+SE+ I L + + + L NLK L
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 530 NLSEIPT--CPHL---LTLFLNKNKLQMIHNDFFQFMPSLKVLNLSH-AELTELPVGIAQ 583
NL+ IPT HL + L L + I + F+ + LKVL +SH L +
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222
Query: 584 LVSLQHLDLSESDISELPE-ELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFG 642
++L L ++ +++ +P ++ LV L+ LNL + + TI ++ L RL +++ G
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVG 281
Query: 643 A 643
Sbjct: 282 G 282
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 513 KGWANARRISLMDNQITNLSEIPTCPHLLTLF---LNKNKLQMIHNDFFQFMPSLKVLNL 569
+G N R ++L + NL +IP L+ L L+ N+L +I FQ + SL+ L L
Sbjct: 153 EGLVNLRYLNL---GMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
Query: 570 SHAELTELPV-GIAQLVSLQHLDLSESDISELPEEL 604
HA++ + L SL+ L+LS +++ LP +L
Sbjct: 210 MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 517 NARRISLMDN--QITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAEL 574
N R ++L +N Q+ HL L L+KN ++ I F +PSL L L L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 575 TELPVGIAQLVS-LQHLDLSESDISELP 601
T +P + +S L+ L L + I +P
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESIP 123
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 515 WANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAEL 574
+ +++L ++T L T P L TL L+ N+LQ + Q +P+L VL++S L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 575 TELPVG-IAQLVSLQHLDLSESDISELPEE-LKALVNLKCLNLEWTRYLITIPRQLVSNL 632
T LP+G + L LQ L L +++ LP L L+ L+L L +P L++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGL 171
Query: 633 SRLHVLRM 640
L L +
Sbjct: 172 ENLDTLLL 179
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 561 MPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELP-EELKALVNLKCLNLEWTR 619
+P L L+LSH +L LP+ L +L LD+S + ++ LP L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 620 YLITIPRQLVSNLSRLHVLRMFGASNNV 647
L T+P L++ +L L + A+NN+
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL--ANNNL 160
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLD---LSESDISE 599
L+L N+L+ + P L+ L+L++ LTELP G+ L L++LD L E+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLYT 186
Query: 600 LPE 602
+P+
Sbjct: 187 IPK 189
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 520 RISLMDNQITNLSE--IPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTEL 577
++SL NQI +L + L L+L++NKLQ + N F + LK L L +L +
Sbjct: 56 KLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV 115
Query: 578 PVGI-AQLVSLQHL 590
P GI +L SLQ +
Sbjct: 116 PDGIFDRLTSLQKI 129
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 531 LSEIPT-CPHLLT-LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGI-AQLVSL 587
L+ +PT P T L L NKLQ + + F + L L+LS ++ LP G+ +L L
Sbjct: 19 LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78
Query: 588 QHLDLSESDISELPEEL-KALVNLKCLNLEWTRYLITIPRQLVSNLSRLH 636
L L E+ + LP + L LK L L+ T L ++P + L+ L
Sbjct: 79 TILYLHENKLQSLPNGVFDKLTQLKELALD-TNQLKSVPDGIFDRLTSLQ 127
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 526 NQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLV 585
N I++++ + P L +L+L NK+ I + L L+L +++++ V +A L
Sbjct: 119 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGLT 175
Query: 586 SLQHLDLSESDISELPEELKALVNLKCLNL 615
LQ+L LS++ IS+L L L NL L L
Sbjct: 176 KLQNLYLSKNHISDL-RALAGLKNLDVLEL 204
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 25/145 (17%)
Query: 517 NARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMI---------------HNDFFQF- 560
N ++ L N++T++ + +L LFL++NK++ + HN
Sbjct: 66 NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN 125
Query: 561 ----MPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPEELKALVNLKCLNLE 616
+P L+ L L + ++T++ V +++L L L L ++ IS++ L L L+ NL
Sbjct: 126 GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQ--NLY 181
Query: 617 WTRYLITIPRQLVSNLSRLHVLRMF 641
++ I+ R L + L L VL +F
Sbjct: 182 LSKNHISDLRAL-AGLKNLDVLELF 205
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 515 WANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAEL 574
+ +++L ++T L T P L TL L+ N+LQ + Q +P+L VL++S L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 575 TELPVG-IAQLVSLQHLDLSESDISELPEE-LKALVNLKCLNLEWTRYLITIPRQLVSNL 632
T LP+G + L LQ L L +++ LP L L+ L+L L +P L++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGL 171
Query: 633 SRLHVLRM 640
L L +
Sbjct: 172 ENLDTLLL 179
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 561 MPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELP-EELKALVNLKCLNLEWTR 619
+P L L+LSH +L LP+ L +L LD+S + ++ LP L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 620 YLITIPRQLVSNLSRLHVLRMFGASNNV 647
L T+P L++ +L L + A+NN+
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL--ANNNL 160
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLD---LSESDISE 599
L+L N+L+ + P L+ L+L++ LTELP G+ L L++LD L E+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLYT 186
Query: 600 LPE 602
+P+
Sbjct: 187 IPK 189
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 515 WANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAEL 574
+ +++L ++T L T P L TL L+ N+LQ + Q +P+L VL++S L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 575 TELPVG-IAQLVSLQHLDLSESDISELPEE-LKALVNLKCLNLEWTRYLITIPRQLVSNL 632
T LP+G + L LQ L L +++ LP L L+ L+L L +P L++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGL 171
Query: 633 SRLHVLRM 640
L L +
Sbjct: 172 ENLDTLLL 179
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 561 MPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELP-EELKALVNLKCLNLEWTR 619
+P L L+LSH +L LP+ L +L LD+S + ++ LP L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 620 YLITIPRQLVSNLSRLHVLRMFGASNNV 647
L T+P L++ +L L + A+NN+
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL--ANNNL 160
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLD---LSESDISE 599
L+L N+L+ + P L+ L+L++ LTELP G+ L L++LD L E+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLYT 186
Query: 600 LPE 602
+P+
Sbjct: 187 IPK 189
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 538 PHLLTLFLNKNKLQMIHN-----DFFQFMPSLKVLNLSHAELTELPVGI-AQLVSLQHLD 591
P L LFL +N LQ+ D F+ + L+VL L+H L LP G+ + L +L+ L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 592 LSESDISELPE-ELKALVNLKCLNLEWTRYLITIPRQLVS 630
L+ + ++ L +L A NL+ L++ + L P VS
Sbjct: 511 LNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVS 548
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 511 EVKGWANARRISLMDNQITNLS--EIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLN 568
E+ + + I L +N+I+ LS LLTL L+ N+L+ I F + SL++L+
Sbjct: 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 569 LSHAELTELPVG-IAQLVSLQHLDLSESDI 597
L +++ +P G L +L HL + + +
Sbjct: 109 LHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 25/143 (17%)
Query: 247 QKAQDIFRIL---KEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGL 303
++A+D RIL K + +L+LDD+W L ++ +++ TTR + V
Sbjct: 227 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 278
Query: 304 MDAQKKFKVACLSDIDAWELFRQKVGEEALH-----SHPAILELAHTVAKECGGLPLALI 358
+ K+ V S + ++ G E L + E AH++ KEC G PL +
Sbjct: 279 V-MGPKYVVPVESSLG------KEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVS 331
Query: 359 TVGRAMACKKTPEEWRYAIQVLR 381
+G + + P W Y ++ L+
Sbjct: 332 LIGALL--RDFPNRWEYYLKQLQ 352
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 247 QKAQDIFRIL---KEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGL 303
++A+D RIL K + +L+LDD+W L ++ +++ TTR + V
Sbjct: 221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 272
Query: 304 MDAQKKFKVACLSDIDAWELFRQKVGEEALH-----SHPAILELAHTVAKECGGLPLALI 358
+ K+ V S + ++ G E L + E AH++ KEC G PL +
Sbjct: 273 V-MGPKYVVPVESSLG------KEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVS 325
Query: 359 TVGRAMACKKTPEEWRYAIQVLRT 382
+G + + P W Y ++ L+
Sbjct: 326 LIGALL--RDFPNRWEYYLKQLQN 347
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 526 NQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLV 585
N I++++ + P L +L+L NK+ I + L L+L +++++ V +A L
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGLT 178
Query: 586 SLQHLDLSESDISELPEELKALVNLKCLNL 615
LQ+L LS++ IS+L L L NL L L
Sbjct: 179 KLQNLYLSKNHISDL-RALAGLKNLDVLEL 207
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 29/148 (19%)
Query: 506 LTEAPEVKGWANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLK 565
LT+ PE+ +S +N + LSE+P P+L L + N+++ + PSL+
Sbjct: 269 LTDLPELPQSLTFLDVS--ENIFSGLSELP--PNLYYLNASSNEIRSL----CDLPPSLE 320
Query: 566 VLNLSHAELTELPVGIAQL----VSLQHLDLSESDISELPEELKAL------------VN 609
LN+S+ +L ELP +L S HL +++ ELP+ LK L +
Sbjct: 321 ELNVSNNKLIELPALPPRLERLIASFNHL----AEVPELPQNLKQLHVEYNPLREFPDIP 376
Query: 610 LKCLNLEWTRYLITIPRQLVSNLSRLHV 637
+L +L +P +L NL +LHV
Sbjct: 377 ESVEDLRMNSHLAEVP-ELPQNLKQLHV 403
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 525 DNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQL 584
+N + L E+ P L T++ + N L+ + + PSL+ LN+ LT+LP + Q
Sbjct: 224 NNILEELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLP-ELPQ- 277
Query: 585 VSLQHLDLSE---SDISELPEELKAL 607
SL LD+SE S +SELP L L
Sbjct: 278 -SLTFLDVSENIFSGLSELPPNLYYL 302
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 525 DNQITNLSEIPT--CPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPV-GI 581
D + + + IP+ + +L L+ NK+ I + + +L+VL L + + +
Sbjct: 37 DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF 96
Query: 582 AQLVSLQHLDLSESDISELPEE-LKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRM 640
L SL+HLDLS++ +S L L +LK LNL Y L NL+ L LR+
Sbjct: 97 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 156
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 525 DNQITNLSEIPT--CPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPV-GI 581
D + + + IP+ + +L L+ NK+ I + + +L+VL L + + +
Sbjct: 11 DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF 70
Query: 582 AQLVSLQHLDLSESDISELPEE-LKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRM 640
L SL+HLDLS++ +S L L +LK LNL Y L NL+ L LR+
Sbjct: 71 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 498 FLVYAGVGLTEAPEVKGWANARRISLMDNQITNLSEIPTCPHL------LTLFLNKNKLQ 551
+L+ + G+ P+V + +++ L N+ I + + L+LNKN +Q
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167
Query: 552 MIHNDFFQFMPSLKVLNLS-HAELTELPVGIAQLVSLQH-LDLSESDISELPEELKALVN 609
IHN F L LNLS + L ELP + S LD+S + I LP L N
Sbjct: 168 EIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLEN 224
Query: 610 LKCLNLEWTRYLITIP 625
LK L T L +P
Sbjct: 225 LKKLRARSTYNLKKLP 240
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 561 MPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELP-EELKALVNLKCLNLEWTR 619
+P L L+LSH +L LP+ L +L LD+S + ++ LP L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 620 YLITIPRQLVSNLSRLHVLRMFGASNNVLDE 650
L T+P L++ +L L + +NN L E
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL---ANNQLTE 162
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLD---LSESDISE 599
L+L N+L+ + P L+ L+L++ +LTELP G+ L L++LD L E+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL--LNGLENLDTLLLQENSLYT 186
Query: 600 LPE 602
+P+
Sbjct: 187 IPK 189
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 561 MPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELP-EELKALVNLKCLNLEWTR 619
+P L L+LSH +L LP+ L +L LD+S + ++ LP L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 620 YLITIPRQLVSNLSRLHVLRMFGASNNV 647
L T+P L++ +L L + A+NN+
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL--ANNNL 160
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLD---LSESDISE 599
L+L N+L+ + P L+ L+L++ LTELP G+ L L++LD L E+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLYT 186
Query: 600 LPE 602
+P+
Sbjct: 187 IPK 189
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 530 NLSEIPTCPHLL-------TLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGI- 581
N+ E+P+ HL ++ NKL+ + F MP LK LNL+ +L +P GI
Sbjct: 157 NIEEMPS--HLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIF 214
Query: 582 AQLVSLQHL 590
+L SLQ +
Sbjct: 215 DRLTSLQKI 223
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 561 MPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELP-EELKALVNLKCLNLEWTR 619
+P L L+LSH +L LP+ L +L LD+S + ++ LP L+ L L+ L L+
Sbjct: 77 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 136
Query: 620 YLITIPRQLVSNLSRLHVLRMFGASNNV 647
L T+P L++ +L L + A+NN+
Sbjct: 137 -LKTLPPGLLTPTPKLEKLSL--ANNNL 161
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLD---LSESDISE 599
L+L N+L+ + P L+ L+L++ LTELP G+ L L++LD L E+ +
Sbjct: 130 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLYT 187
Query: 600 LPE 602
+P+
Sbjct: 188 IPK 190
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 561 MPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELP-EELKALVNLKCLNLEWTR 619
+P L L+LSH +L LP+ L +L LD+S + ++ LP L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 620 YLITIPRQLVSNLSRLHVLRMFGASNNVLDE 650
L T+P L++ +L L + +NN L E
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL---ANNQLTE 162
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLD---LSESDISE 599
L+L N+L+ + P L+ L+L++ +LTELP G+ L L++LD L E+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL--LNGLENLDTLLLQENSLYT 186
Query: 600 LPE 602
+P+
Sbjct: 187 IPK 189
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 521 ISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTEL--- 577
I DN+I L P L TL +N N++ I Q +P L L L++ L EL
Sbjct: 47 IDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL 106
Query: 578 -PVGIAQLVSLQHL 590
P +A L SL +L
Sbjct: 107 DP--LASLKSLTYL 118
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 526 NQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLV 585
N I++++ + P L +L+L NK+ I + L L+L ++ + V +A+L
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRI-VPLARLT 176
Query: 586 SLQHLDLSESDISELPEELKALVNLKCLNL 615
LQ+L LS++ IS+L L+ L NL L L
Sbjct: 177 KLQNLYLSKNHISDL-RALRGLKNLDVLEL 205
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 561 MPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELP-EELKALVNLKCLNLEWTR 619
+P L L+LSH +L LP+ L +L LD+S + ++ LP L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 620 YLITIPRQLVSNLSRLHVLRMFGASNNVLDE 650
L T+P L++ +L L + +NN L E
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL---ANNDLTE 162
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLD---LSESDISE 599
L+L N+L+ + P L+ L+L++ +LTELP G+ L L++LD L E+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGL--LNGLENLDTLLLQENSLYT 186
Query: 600 LPE 602
+P+
Sbjct: 187 IPK 189
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 247 QKAQDIFRIL---KEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGL 303
++A+D R+L K + +L+LDD+W L +N +++ TTR + V
Sbjct: 221 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDS 272
Query: 304 MDAQKKF-----KVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALI 358
+ K + ++ LF E+ PA AH++ KEC G PL +
Sbjct: 273 VMGPKHVVPVESGLGREKGLEILSLFVNMKKEDL----PA---EAHSIIKECKGSPLVVS 325
Query: 359 TVGRAMACKKTPEEWRYAIQVLR 381
+G + + P W Y ++ L+
Sbjct: 326 LIGALL--RDFPNRWAYYLRQLQ 346
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 561 MPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELP-EELKALVNLKCLNLEWTR 619
+P L L+LSH +L LP+ L +L LD+S + ++ LP L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 620 YLITIPRQLVSNLSRLHVLRMFGASNNVLDE 650
L T+P L++ +L L + +NN L E
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL---ANNQLTE 162
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLD---LSESDISE 599
L+L N+L+ + P L+ L+L++ +LTELP G+ L L++LD L E+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL--LNGLENLDTLLLQENSLYT 186
Query: 600 LPE 602
+P+
Sbjct: 187 IPK 189
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 561 MPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELP-EELKALVNLKCLNLEWTR 619
+P L L+LSH +L LP+ L +L LD+S + ++ LP L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 620 YLITIPRQLVSNLSRLHVLRMFGASNNVLDE 650
L T+P L++ +L L + +NN L E
Sbjct: 136 -LKTLPPGLLTPTPKLEKLSL---ANNQLTE 162
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLD---LSESDISE 599
L+L N+L+ + P L+ L+L++ +LTELP G+ L L++LD L E+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL--LNGLENLDTLLLQENSLYT 186
Query: 600 LPE 602
+P+
Sbjct: 187 IPK 189
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 15/162 (9%)
Query: 502 AGVGLTEAPE-VKGWANARRISLMDNQITNLSEI-----PTCPHLLTLFLNKNKLQMIHN 555
L+E P + G + +++ L N+ NL +I P+ HL ++ N +L++
Sbjct: 286 TATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL-SIKGNTKRLEL-GT 343
Query: 556 DFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHL---DLSESD-ISELPEELKALVNLK 611
+ + +L+ L+LSH ++ QL +L HL +LS ++ +S E K L+
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403
Query: 612 CLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASE 653
L+L +TR + + S LH+L++ S+++LD +SE
Sbjct: 404 LLDLAFTRLKV---KDAQSPFQNLHLLKVLNLSHSLLDISSE 442
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 526 NQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLV 585
N I++++ + P L +L+L NK+ I + L L+L +++++ V +A L
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGLT 176
Query: 586 SLQHLDLSESDISELPEELKALVNLKCLNL 615
LQ+L LS++ IS +L+AL LK L++
Sbjct: 177 KLQNLYLSKNHIS----DLRALAGLKNLDV 202
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 526 NQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLV 585
N I++++ + P L +L+L NK+ I + L L+L +++++ V +A L
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGLT 178
Query: 586 SLQHLDLSESDISELPEELKALVNLKCLNL 615
LQ+L LS++ IS +L+AL LK L++
Sbjct: 179 KLQNLYLSKNHIS----DLRALAGLKNLDV 204
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 564 LKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPEELKALVNLKCLNL 615
++VL+L+H +LT L + QL+ + HLDLS + + LP AL L+CL +
Sbjct: 443 VRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALP---PALAALRCLEV 490
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 564 LKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPEELKALVNLKCLNL 615
++VL+L+H +LT L + QL+ + HLDLS + + LP AL L+CL +
Sbjct: 443 VRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALP---PALAALRCLEV 490
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 519 RRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQM----IHNDFFQFMPSLKVLNLSHAEL 574
+R++ N+ N P L L L++N L +DF SLK L+LS +
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG--TTSLKYLDLSFNGV 385
Query: 575 TELPVGIAQLVSLQHLDLSESDISELPE--ELKALVNLKCLNLEWTRYLITIPRQLVSNL 632
+ L L+HLD S++ ++ E +L NL L++ T + + + L
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGL 444
Query: 633 SRLHVLRMFGAS 644
S L VL+M G S
Sbjct: 445 SSLEVLKMAGNS 456
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 19/189 (10%)
Query: 471 DGEVKMHDVVRDMALW--IACDIEKEKE---NF----LVYAGVGLTEAPEVKGWANARRI 521
DG + + + + +++ + ++ IE+ K+ NF L + P +K + +R+
Sbjct: 296 DGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRL 354
Query: 522 SLMDNQITNLSEIPTCPHLLTLFLNKNKLQM----IHNDFFQFMPSLKVLNLSHAELTEL 577
+ N+ N P L L L++N L +DF SLK L+LS + +
Sbjct: 355 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI--SLKYLDLSFNGVITM 412
Query: 578 PVGIAQLVSLQHLDLSESDISELPE--ELKALVNLKCLNLEWTRYLITIPRQLVSNLSRL 635
L L+HLD S++ ++ E +L NL L++ T + + + LS L
Sbjct: 413 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSL 471
Query: 636 HVLRMFGAS 644
VL+M G S
Sbjct: 472 EVLKMAGNS 480
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 526 NQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLV 585
N I++++ + P L +L+L NK+ I + L L+L +++++ V +A L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGLT 196
Query: 586 SLQHLDLSESDISELPEELKALVNLKCLNL 615
LQ+L LS++ IS+L L L NL L L
Sbjct: 197 KLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 526 NQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLV 585
N I++++ + P L +L+L NK+ I + L L+L +++++ V +A L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPLAGLT 196
Query: 586 SLQHLDLSESDISELPEELKALVNLKCLNL 615
LQ+L LS++ IS+L L L NL L L
Sbjct: 197 KLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 526 NQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLV 585
N I++++ + P L +L+L NK+ I + L L+L +++++ V +A L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPLAGLT 196
Query: 586 SLQHLDLSESDISELPEELKALVNLKCLNL 615
LQ+L LS++ IS+L L L NL L L
Sbjct: 197 KLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 549 KLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISEL-PEELKAL 607
+L I F+ + +L+ LNL+ L E+P + L+ L LDLS + +S + P + L
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Query: 608 VNLK 611
++L+
Sbjct: 231 MHLQ 234
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 24/154 (15%)
Query: 505 GLTEAPEVKGWANARRISLMDNQITNLSEIPTCPH--------LLTLFLNKNKLQM---- 552
GLT P ++A R+ L N++ +L PH L L L+ N L
Sbjct: 18 GLTSVP-TGIPSSATRLELESNKLQSL------PHGVFDKLTQLTKLSLSSNGLSFKGCC 70
Query: 553 IHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPE--ELKALVNL 610
+DF SLK L+LS + + L L+HLD S++ ++ E +L NL
Sbjct: 71 SQSDFG--TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128
Query: 611 KCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGAS 644
L++ T + + + LS L VL+M G S
Sbjct: 129 IYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNS 161
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 540 LLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDI 597
L L + K+ L+ + D F F P L LNLS L L Q +SLQ L LS + +
Sbjct: 58 LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 526 NQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLV 585
N I++++ + P L +L+L NK+ I + L L+L +++++ V +A L
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPLAGLT 173
Query: 586 SLQHLDLSESDISELPEELKALVNLKCLNL 615
LQ+L LS++ IS+L L L NL L L
Sbjct: 174 KLQNLYLSKNHISDL-RALAGLKNLDVLEL 202
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 498 FLVYAGVGLTEAPEVKGWANARRISLMDNQITNLSEIPTCPHL------LTLFLNKNKLQ 551
+L+ + G+ P+V + +++ L N+ I + + L+LNKN +Q
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167
Query: 552 MIHNDFFQFMPSLKVLNLS-HAELTELPVGIAQLVSLQH-LDLSESDISELPEELKALVN 609
IHN F L LNLS + L ELP + S LD+S + I LP L N
Sbjct: 168 EIHNCAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLEN 224
Query: 610 LKCLNLEWTRYLITIP 625
LK L T L +P
Sbjct: 225 LKKLRARSTYNLKKLP 240
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 472 GEVKMHDVVRDMALWIACDIEKEKENFLVYAGVGLTEAPEVKGWANARRISLMDNQITNL 531
G+ + D V L ++ ++ +G+ V+ N +I+ +NQ+T++
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADR--------LGIKSIDGVEYLNNLTQINFSNNQLTDI 78
Query: 532 SEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLD 591
+ + L+ + +N N++ I + +L L L + ++T++ + L +L L+
Sbjct: 79 TPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLE 135
Query: 592 LSESDISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHV 637
LS + IS++ L L +L+ LN + P ++ L RL +
Sbjct: 136 LSSNTISDI-SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDI 180
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 563 SLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPE--ELKALVNLKCLNLEWTRY 620
SLK L+LS + + L L+HLD S++ ++ E +L NL L++ T
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 621 LITIPRQLVSNLSRLHVLRMFGAS 644
+ + + LS L VL+M G S
Sbjct: 434 RVAF-NGIFNGLSSLEVLKMAGNS 456
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPE 602
L+++ N+L + N + Q +P+LKVL+LSH L + Q L++L L + I L
Sbjct: 283 LYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-- 339
Query: 603 ELKALVNLKCLNLEWTRYLITIPRQLVSNLSR 634
+L LK L L + R L N++R
Sbjct: 340 KLSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 371
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 499 LVYAGVG-LTEAPEVKGWANARRISLMD---NQITNLSEIPTCPHLLTLFLNKNKLQMIH 554
+ Y G L E P ++ L+D N++ +L T L L L+ N+++ I
Sbjct: 552 IFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIP 611
Query: 555 NDFFQFMPSLKVLNLSHAELTELP 578
DF F ++ L SH +L +P
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIP 635
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 31/161 (19%)
Query: 472 GEVKMHDVVRDMALWIACDIEKEKENFLVYAGVGLTEAPEVKGWANARRISLMDNQITNL 531
G+ + D V L ++ ++ +G+ V+ N +I+ +NQ+T++
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADR--------LGIKSIDGVEYLNNLTQINFSNNQLTDI 78
Query: 532 SEIPTCPHLLTLFLNKNK---------------LQMIHNDFFQFMPSLKVLNLSHAELTE 576
+ + L+ + +N N+ L + +N P + NL+ EL+
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
Query: 577 LPV----GIAQLVSLQHLDLSESDISELPEELKALVNLKCL 613
+ ++ L SLQ L S + ++ +LK L NL L
Sbjct: 139 NTISDISALSGLTSLQQLSFSSNQVT----DLKPLANLTTL 175
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 526 NQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLV 585
N I++++ + P L +L+L NK+ I + L L+L +++++ V +A L
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLACLT 173
Query: 586 SLQHLDLSESDISELPEELKALVNLKCLNL 615
LQ+L LS++ IS +L+AL LK L++
Sbjct: 174 KLQNLYLSKNHIS----DLRALCGLKNLDV 199
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 31/161 (19%)
Query: 472 GEVKMHDVVRDMALWIACDIEKEKENFLVYAGVGLTEAPEVKGWANARRISLMDNQITNL 531
G+ + D V L ++ ++ +G+ V+ N +I+ +NQ+T++
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADR--------LGIKSIDGVEYLNNLTQINFSNNQLTDI 78
Query: 532 SEIPTCPHLLTLFLNKNK---------------LQMIHNDFFQFMPSLKVLNLSHAELTE 576
+ + L+ + +N N+ L + +N P + NL+ EL+
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
Query: 577 LPV----GIAQLVSLQHLDLSESDISELPEELKALVNLKCL 613
+ ++ L SLQ L S + ++ +LK L NL L
Sbjct: 139 NTISDISALSGLTSLQQLSFSSNQVT----DLKPLANLTTL 175
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 247 QKAQDIFRIL---KEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGL 303
++A+D R+L K + +L+LDD+W L +N +++ TT + V
Sbjct: 228 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTSDKSVTDS 279
Query: 304 MDAQKKF-----KVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALI 358
+ K + ++ LF E+ PA AH++ KEC G PL +
Sbjct: 280 VMGPKHVVPVESGLGREKGLEILSLFVNMKKEDL----PA---EAHSIIKECKGSPLVVS 332
Query: 359 TVGRAMACKKTPEEWRYAIQVLR 381
+G + + P W Y ++ L+
Sbjct: 333 LIGALL--RDFPNRWAYYLRQLQ 353
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 543 LFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPE 602
L+++ N+L + N + Q +P+LKVL+LSH L + Q L++L L + I L
Sbjct: 277 LYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-- 333
Query: 603 ELKALVNLKCLNLEWTRYLITIPRQLVSNLSR 634
+L LK L L + R L N++R
Sbjct: 334 KLSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 365
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 520 RISLMDNQITNL--SEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELT-E 576
++ L NQ+T + + H+ L L +NK++ I N F + LK LNL +++
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 577 LPVGIAQLVSLQHLDLSES 595
+P L SL L+L+ +
Sbjct: 118 MPGSFEHLNSLTSLNLASN 136
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 502 AGVGLTEAPEVKGWANARRISLMDNQITNLSE---IPTCPHLLTLFLNKNKLQMIHNDFF 558
G GL E P + + L DN++ +S PHL+ L L +N+L I + F
Sbjct: 16 TGRGLKEIPRDIPL-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74
Query: 559 QFMPSLKVLNLSHAELTELP----VGIAQLVSLQHLDLSESDISELPEELKALVNLKCLN 614
+ ++ L L ++ E+ +G+ QL +L D S + +P + L +L LN
Sbjct: 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV--MPGSFEHLNSLTSLN 132
Query: 615 L 615
L
Sbjct: 133 L 133
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 68/143 (47%), Gaps = 12/143 (8%)
Query: 472 GEVKMHDVVRDMALWIACDIEKEKENFLVYAGVGLTEAPEVKGWANARRISLMDNQITNL 531
G+ + D V L ++ ++ +G+ V+ N +I+ +NQ+T++
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADR--------LGIKSIDGVEYLNNLTQINFSNNQLTDI 78
Query: 532 SEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLD 591
+ + L+ + +N N++ I + +L L L + ++T++ + L +L L+
Sbjct: 79 TPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLE 135
Query: 592 LSESDISELPEELKALVNLKCLN 614
LS + IS++ L L +L+ LN
Sbjct: 136 LSSNTISDI-SALSGLTSLQQLN 157
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 538 PHLLTLFLNK-NKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESD 596
P L+ L L + KL+ I F+ + +LK LNL + ++P + LV L+ L++S +
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNH 229
Query: 597 ISEL-PEELKALVNLK 611
E+ P L +LK
Sbjct: 230 FPEIRPGSFHGLSSLK 245
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 68/143 (47%), Gaps = 12/143 (8%)
Query: 472 GEVKMHDVVRDMALWIACDIEKEKENFLVYAGVGLTEAPEVKGWANARRISLMDNQITNL 531
G+ + D V L ++ ++ +G+ V+ N +I+ +NQ+T++
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADR--------LGIKSIDGVEYLNNLTQINFSNNQLTDI 78
Query: 532 SEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLD 591
+ + L+ + +N N++ I + +L L L + ++T++ + L +L L+
Sbjct: 79 TPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLE 135
Query: 592 LSESDISELPEELKALVNLKCLN 614
LS + IS++ L L +L+ LN
Sbjct: 136 LSSNTISDI-SALSGLTSLQQLN 157
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 33/151 (21%)
Query: 525 DNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSH------------A 572
+NQI++++ + +L L LN N+L+ I + +L L+L++
Sbjct: 207 NNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAPLSGLT 264
Query: 573 ELTELPVG---------IAQLVSLQHLDLSESDISELPEELKALVNLKCLNLEW-TRYLI 622
+LTEL +G +A L +L +L+L+E+ + E++ + NLK NL + T Y
Sbjct: 265 KLTELKLGANQISNISPLAGLTALTNLELNENQL----EDISPISNLK--NLTYLTLYFN 318
Query: 623 TIPR-QLVSNLSRLHVLRMFGASNNVLDEAS 652
I VS+L++L R+F A+N V D +S
Sbjct: 319 NISDISPVSSLTKLQ--RLFFANNKVSDVSS 347
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 519 RRISLMDNQITNLSE--IPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTE 576
R+I+ +N+IT++ E + + L N+L+ + + F+ + SLK L L +T
Sbjct: 60 RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT- 118
Query: 577 LPVG---IAQLVSLQHLDLSESDISEL-PEELKALVNLKCLNL 615
VG L S++ L L ++ I+ + P L +L LNL
Sbjct: 119 -CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 521 ISLMDNQITNL--SEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELP 578
+ L +N+IT + + +L TL L NK+ I F + L+ L LS +L ELP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 579 VGIAQLVSLQHLDLSESDISEL 600
+ + +LQ L + E++I+++
Sbjct: 117 EKMPK--TLQELRVHENEITKV 136
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 521 ISLMDNQITNL--SEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELP 578
+ L +N+IT + + +L TL L NK+ I F + L+ L LS +L ELP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 579 VGIAQLVSLQHLDLSESDISEL 600
+ + +LQ L + E++I+++
Sbjct: 117 EKMPK--TLQELRVHENEITKV 136
>pdb|2AL6|A Chain A, Ferm Domain Of Focal Adhesion Kinase
pdb|2AL6|B Chain B, Ferm Domain Of Focal Adhesion Kinase
Length = 375
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 340 LELAHTVAKECG--GLPLALITVGRAMACKKTPEEWRYAIQVLRTSSSQFAGLGNEVYPL 397
L L+H ++E L + + V PEEW+Y +++ R F E P
Sbjct: 55 LRLSHLQSEEVHWLHLDMGVSNVREKFELAHPPEEWKYELRI-RYLPKGFLNQFTEDKPT 113
Query: 398 LRFSYDNLPNDTI 410
L F Y + ND +
Sbjct: 114 LNFFYQQVKNDYM 126
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 537 CPHLLTLFLNKNKLQMIHN--DFFQFMPSLKVLNLSHAEL 574
P LL+L L+ N+L + + Q P+LK+LNLS EL
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208
>pdb|2AEH|A Chain A, Focal Adhesion Kinase 1
pdb|2AEH|B Chain B, Focal Adhesion Kinase 1
Length = 369
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 340 LELAHTVAKECG--GLPLALITVGRAMACKKTPEEWRYAIQVLRTSSSQFAGLGNEVYPL 397
L L+H ++E L + + V PEEW+Y +++ R F E P
Sbjct: 55 LRLSHLQSEEVHWLHLDMGVSNVREKFELAHPPEEWKYELRI-RYLPKGFLNQFTEDKPT 113
Query: 398 LRFSYDNLPNDTI 410
L F Y + ND +
Sbjct: 114 LNFFYQQVKNDYM 126
>pdb|2J0M|A Chain A, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase
Length = 371
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 340 LELAHTVAKECG--GLPLALITVGRAMACKKTPEEWRYAIQVLRTSSSQFAGLGNEVYPL 397
L L+H ++E L + + V PEEW+Y +++ R F E P
Sbjct: 57 LRLSHLQSEEVHWLHLDMGVSNVREKFELAHPPEEWKYELRI-RYLPKGFLNQFTEDKPT 115
Query: 398 LRFSYDNLPNDTI 410
L F Y + ND +
Sbjct: 116 LNFFYQQVKNDYM 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,381,679
Number of Sequences: 62578
Number of extensions: 973098
Number of successful extensions: 2269
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 2000
Number of HSP's gapped (non-prelim): 289
length of query: 890
length of database: 14,973,337
effective HSP length: 107
effective length of query: 783
effective length of database: 8,277,491
effective search space: 6481275453
effective search space used: 6481275453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)