Query 002700
Match_columns 890
No_of_seqs 534 out of 4115
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-99 4E-104 885.4 52.7 842 16-884 9-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-64 3E-69 626.9 47.8 638 156-852 184-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.9E-44 4.2E-49 384.5 15.6 281 161-444 1-285 (287)
4 PLN03210 Resistant to P. syrin 99.8 2.5E-20 5.5E-25 232.4 19.9 331 516-870 589-969 (1153)
5 PLN00113 leucine-rich repeat r 99.8 2.9E-20 6.3E-25 232.2 15.9 332 514-867 116-463 (968)
6 PLN00113 leucine-rich repeat r 99.8 1.2E-19 2.6E-24 226.8 16.1 330 514-866 162-509 (968)
7 KOG0444 Cytoskeletal regulator 99.8 1.6E-21 3.5E-26 206.4 -4.1 341 497-864 35-394 (1255)
8 KOG0444 Cytoskeletal regulator 99.7 1.7E-19 3.7E-24 191.2 -2.6 290 510-841 97-394 (1255)
9 KOG4194 Membrane glycoprotein 99.7 7.7E-18 1.7E-22 178.0 2.2 315 517-864 126-447 (873)
10 KOG4194 Membrane glycoprotein 99.6 4.4E-17 9.5E-22 172.3 3.4 315 513-866 99-426 (873)
11 KOG0472 Leucine-rich repeat pr 99.6 2.9E-17 6.4E-22 166.3 -3.5 324 508-845 198-540 (565)
12 KOG0472 Leucine-rich repeat pr 99.4 1.5E-15 3.3E-20 154.0 -7.9 263 539-867 46-308 (565)
13 PRK15387 E3 ubiquitin-protein 99.4 3.7E-12 8.1E-17 147.7 17.2 129 497-643 204-332 (788)
14 KOG0618 Serine/threonine phosp 99.4 1.1E-14 2.4E-19 162.8 -3.7 41 748-790 381-423 (1081)
15 KOG4658 Apoptotic ATPase [Sign 99.4 3.2E-13 7E-18 160.0 8.3 325 499-852 528-866 (889)
16 PRK04841 transcriptional regul 99.4 4.1E-11 8.8E-16 149.4 23.0 293 154-488 12-332 (903)
17 PRK15387 E3 ubiquitin-protein 99.3 9.9E-12 2.1E-16 144.3 13.8 255 517-844 202-456 (788)
18 KOG0617 Ras suppressor protein 99.3 3.8E-14 8.3E-19 127.3 -6.6 129 510-641 27-158 (264)
19 PRK00411 cdc6 cell division co 99.3 4E-10 8.7E-15 125.8 22.9 294 155-468 29-357 (394)
20 PRK15370 E3 ubiquitin-protein 99.3 2.6E-11 5.6E-16 141.9 12.9 101 517-626 200-300 (754)
21 PRK15370 E3 ubiquitin-protein 99.2 3.9E-11 8.4E-16 140.4 12.4 116 517-644 179-294 (754)
22 KOG0618 Serine/threonine phosp 99.2 5.6E-13 1.2E-17 149.5 -2.9 268 517-821 220-488 (1081)
23 KOG0617 Ras suppressor protein 99.2 6.9E-13 1.5E-17 119.3 -2.4 134 508-644 48-184 (264)
24 TIGR02928 orc1/cdc6 family rep 99.2 5.2E-09 1.1E-13 115.6 26.8 296 156-469 15-350 (365)
25 TIGR03015 pepcterm_ATPase puta 99.2 2.6E-09 5.6E-14 112.6 22.9 182 175-364 41-242 (269)
26 PF01637 Arch_ATPase: Archaeal 99.2 5.5E-11 1.2E-15 122.7 8.8 196 158-359 1-233 (234)
27 TIGR00635 ruvB Holliday juncti 99.2 3.5E-10 7.7E-15 121.4 14.7 274 156-470 4-290 (305)
28 PRK00080 ruvB Holliday junctio 99.1 1.2E-09 2.6E-14 117.9 17.2 273 156-469 25-310 (328)
29 COG2909 MalT ATP-dependent tra 99.1 5.2E-09 1.1E-13 118.0 19.9 290 156-487 19-337 (894)
30 PF05729 NACHT: NACHT domain 99.0 4.8E-09 1E-13 101.7 11.9 142 178-328 1-163 (166)
31 KOG4237 Extracellular matrix p 98.9 1.1E-10 2.3E-15 119.3 -2.3 102 540-642 69-173 (498)
32 KOG4237 Extracellular matrix p 98.9 9.7E-11 2.1E-15 119.6 -3.4 291 499-820 51-357 (498)
33 COG3899 Predicted ATPase [Gene 98.9 3.6E-08 7.7E-13 118.1 16.6 306 158-486 2-384 (849)
34 PRK06893 DNA replication initi 98.8 1.5E-08 3.3E-13 103.0 11.0 152 176-360 38-203 (229)
35 PF14580 LRR_9: Leucine-rich r 98.8 3.5E-09 7.7E-14 100.8 5.5 127 514-643 17-150 (175)
36 cd00116 LRR_RI Leucine-rich re 98.8 7.1E-10 1.5E-14 120.4 0.7 83 537-619 22-119 (319)
37 COG2256 MGS1 ATPase related to 98.8 2.8E-08 6E-13 103.0 11.3 158 168-356 39-208 (436)
38 KOG4341 F-box protein containi 98.8 2.9E-10 6.3E-15 117.2 -3.1 161 696-870 269-440 (483)
39 TIGR03420 DnaA_homol_Hda DnaA 98.7 1E-07 2.2E-12 97.5 12.7 168 161-361 22-202 (226)
40 PTZ00112 origin recognition co 98.7 2.9E-07 6.2E-12 104.9 16.2 208 155-364 754-986 (1164)
41 PF14580 LRR_9: Leucine-rich r 98.7 3.4E-08 7.3E-13 94.1 6.1 120 499-618 24-150 (175)
42 PRK13342 recombination factor 98.6 2.1E-07 4.5E-12 103.7 13.1 175 156-361 12-197 (413)
43 cd00116 LRR_RI Leucine-rich re 98.6 4.6E-08 9.9E-13 106.1 6.1 192 558-761 77-289 (319)
44 PRK07003 DNA polymerase III su 98.6 1.2E-06 2.5E-11 99.8 17.1 179 156-362 16-223 (830)
45 PRK08727 hypothetical protein; 98.6 4.7E-07 1E-11 92.3 12.5 167 158-357 22-201 (233)
46 PRK04195 replication factor C 98.6 2.8E-06 6.1E-11 96.6 19.7 181 156-365 14-207 (482)
47 KOG3207 Beta-tubulin folding c 98.5 2.4E-08 5.3E-13 103.9 1.4 208 535-781 118-334 (505)
48 PRK12402 replication factor C 98.5 1.1E-06 2.4E-11 96.0 14.4 193 156-358 15-224 (337)
49 TIGR02903 spore_lon_C ATP-depe 98.5 8.6E-06 1.9E-10 94.6 22.3 202 156-363 154-398 (615)
50 PRK05564 DNA polymerase III su 98.5 2.7E-06 5.8E-11 91.3 16.0 177 156-359 4-189 (313)
51 PRK14949 DNA polymerase III su 98.5 1.4E-06 3.1E-11 101.2 14.3 178 156-358 16-218 (944)
52 COG1474 CDC6 Cdc6-related prot 98.5 9.8E-06 2.1E-10 87.5 19.9 200 156-360 17-238 (366)
53 PF13173 AAA_14: AAA domain 98.5 2.5E-07 5.5E-12 84.8 6.7 120 177-320 2-127 (128)
54 PRK14961 DNA polymerase III su 98.5 3.6E-06 7.7E-11 92.0 16.7 189 156-357 16-217 (363)
55 cd00009 AAA The AAA+ (ATPases 98.5 1.1E-06 2.4E-11 83.0 11.1 124 159-299 1-131 (151)
56 KOG0532 Leucine-rich repeat (L 98.5 1.3E-08 2.8E-13 109.1 -2.7 121 517-641 76-197 (722)
57 PRK14963 DNA polymerase III su 98.4 3.8E-06 8.2E-11 94.7 16.3 202 156-364 14-222 (504)
58 PRK14960 DNA polymerase III su 98.4 3.7E-06 8.1E-11 94.8 15.6 191 156-358 15-217 (702)
59 PRK00440 rfc replication facto 98.4 4.1E-06 9E-11 90.7 15.5 179 156-357 17-200 (319)
60 PRK12323 DNA polymerase III su 98.4 3.3E-06 7.1E-11 95.0 14.7 195 156-360 16-225 (700)
61 PLN03025 replication factor C 98.4 2.7E-06 5.8E-11 91.5 13.7 180 156-357 13-197 (319)
62 cd01128 rho_factor Transcripti 98.4 5.7E-07 1.2E-11 91.5 8.0 92 175-269 14-113 (249)
63 PRK08084 DNA replication initi 98.4 2E-06 4.3E-11 87.8 11.9 172 156-360 23-209 (235)
64 PRK14957 DNA polymerase III su 98.4 4.6E-06 1E-10 94.1 15.4 184 156-363 16-224 (546)
65 PRK14962 DNA polymerase III su 98.4 4.8E-06 1E-10 93.1 15.3 185 156-364 14-223 (472)
66 KOG1259 Nischarin, modulator o 98.4 7.1E-08 1.5E-12 95.2 0.7 129 512-644 280-410 (490)
67 KOG2028 ATPase related to the 98.4 7E-06 1.5E-10 83.7 14.7 162 168-355 153-331 (554)
68 PF13855 LRR_8: Leucine rich r 98.4 3.5E-07 7.6E-12 71.3 4.4 58 539-596 2-60 (61)
69 PF05496 RuvB_N: Holliday junc 98.4 3.7E-06 7.9E-11 81.9 12.1 171 156-364 24-225 (233)
70 PRK13341 recombination factor 98.4 2.6E-06 5.5E-11 99.8 13.1 166 156-355 28-212 (725)
71 PRK09087 hypothetical protein; 98.4 5.1E-06 1.1E-10 83.9 13.4 143 176-360 43-195 (226)
72 PRK06645 DNA polymerase III su 98.4 9.4E-06 2E-10 91.1 16.7 193 156-357 21-226 (507)
73 PTZ00202 tuzin; Provisional 98.4 2E-05 4.4E-10 83.7 18.0 165 152-327 258-433 (550)
74 PF13401 AAA_22: AAA domain; P 98.3 9.7E-07 2.1E-11 81.5 6.9 117 176-297 3-125 (131)
75 PRK14956 DNA polymerase III su 98.3 6.3E-06 1.4E-10 90.5 14.0 189 156-356 18-218 (484)
76 KOG1259 Nischarin, modulator o 98.3 1.4E-07 3.1E-12 93.1 1.0 79 561-642 283-361 (490)
77 PRK07994 DNA polymerase III su 98.3 5.1E-06 1.1E-10 95.2 13.5 192 156-359 16-219 (647)
78 PF13191 AAA_16: AAA ATPase do 98.3 1.2E-06 2.7E-11 86.4 7.6 45 157-201 1-48 (185)
79 PRK05896 DNA polymerase III su 98.3 8.3E-06 1.8E-10 92.1 14.6 195 156-362 16-223 (605)
80 PRK07940 DNA polymerase III su 98.3 1.7E-05 3.7E-10 86.6 15.7 172 156-360 5-213 (394)
81 PRK07471 DNA polymerase III su 98.3 2.6E-05 5.7E-10 84.4 17.0 196 156-361 19-239 (365)
82 TIGR02397 dnaX_nterm DNA polym 98.3 2.5E-05 5.5E-10 85.9 17.3 181 156-360 14-218 (355)
83 PRK08691 DNA polymerase III su 98.3 9E-06 1.9E-10 92.7 13.7 178 156-358 16-218 (709)
84 PRK14958 DNA polymerase III su 98.3 1.2E-05 2.7E-10 90.8 14.7 178 156-357 16-217 (509)
85 PRK14964 DNA polymerase III su 98.3 1.5E-05 3.3E-10 88.6 14.9 179 156-357 13-214 (491)
86 PRK05642 DNA replication initi 98.2 1.2E-05 2.5E-10 82.1 12.9 151 177-360 45-208 (234)
87 PRK08903 DnaA regulatory inact 98.2 6.3E-06 1.4E-10 84.2 11.1 169 159-364 22-203 (227)
88 PRK14951 DNA polymerase III su 98.2 2.1E-05 4.5E-10 90.2 15.8 194 156-359 16-224 (618)
89 KOG3207 Beta-tubulin folding c 98.2 3.7E-07 8E-12 95.3 1.2 126 514-642 119-255 (505)
90 PRK09112 DNA polymerase III su 98.2 1.4E-05 3E-10 86.0 13.2 197 156-361 23-241 (351)
91 KOG2120 SCF ubiquitin ligase, 98.2 5.6E-08 1.2E-12 96.0 -4.7 184 585-821 185-375 (419)
92 COG3903 Predicted ATPase [Gene 98.2 1.5E-06 3.2E-11 91.3 5.2 291 176-488 13-314 (414)
93 PRK14955 DNA polymerase III su 98.2 1.9E-05 4.1E-10 87.4 14.2 196 156-357 16-225 (397)
94 PRK14959 DNA polymerase III su 98.2 2.2E-05 4.8E-10 89.2 14.8 196 156-364 16-225 (624)
95 TIGR01242 26Sp45 26S proteasom 98.2 1.3E-05 2.7E-10 88.1 12.5 171 156-354 122-328 (364)
96 TIGR00678 holB DNA polymerase 98.2 4.4E-05 9.5E-10 75.4 15.1 160 167-356 3-187 (188)
97 PRK09111 DNA polymerase III su 98.2 2.4E-05 5.2E-10 89.9 14.8 195 156-359 24-232 (598)
98 PRK14969 DNA polymerase III su 98.2 2.1E-05 4.5E-10 89.7 14.2 183 156-362 16-223 (527)
99 PRK09376 rho transcription ter 98.2 4.2E-06 9E-11 88.6 7.9 98 168-269 159-266 (416)
100 PRK14952 DNA polymerase III su 98.2 3E-05 6.5E-10 88.5 15.2 198 156-365 13-225 (584)
101 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.4E-11 67.6 3.4 58 562-619 1-60 (61)
102 PLN03150 hypothetical protein; 98.2 4.5E-06 9.8E-11 97.8 8.8 103 539-642 419-524 (623)
103 KOG2120 SCF ubiquitin ligase, 98.2 9.5E-08 2E-12 94.5 -4.4 182 562-784 185-374 (419)
104 COG4886 Leucine-rich repeat (L 98.1 1.7E-06 3.8E-11 96.7 4.8 119 521-642 98-218 (394)
105 PRK14970 DNA polymerase III su 98.1 5.2E-05 1.1E-09 83.6 15.9 183 156-361 17-211 (367)
106 PF00308 Bac_DnaA: Bacterial d 98.1 1.2E-05 2.7E-10 80.8 10.0 160 177-358 34-206 (219)
107 PRK07133 DNA polymerase III su 98.1 5.9E-05 1.3E-09 87.1 15.9 193 156-361 18-221 (725)
108 PRK14087 dnaA chromosomal repl 98.1 3E-05 6.6E-10 86.6 13.2 167 177-361 141-320 (450)
109 PRK07764 DNA polymerase III su 98.1 5.2E-05 1.1E-09 90.1 15.8 178 156-362 15-224 (824)
110 KOG0532 Leucine-rich repeat (L 98.1 5.2E-07 1.1E-11 97.1 -1.2 126 513-642 118-243 (722)
111 PRK14954 DNA polymerase III su 98.1 9E-05 2E-09 85.3 16.4 201 156-361 16-230 (620)
112 PRK14971 DNA polymerase III su 98.1 8.7E-05 1.9E-09 86.0 16.3 178 156-357 17-219 (614)
113 PRK08451 DNA polymerase III su 98.0 9.5E-05 2.1E-09 83.2 16.0 178 156-360 14-218 (535)
114 PRK14953 DNA polymerase III su 98.0 0.00012 2.7E-09 82.3 16.9 181 156-360 16-220 (486)
115 TIGR00767 rho transcription te 98.0 1.7E-05 3.8E-10 84.5 9.2 93 175-269 166-265 (415)
116 PRK14950 DNA polymerase III su 98.0 0.00011 2.5E-09 85.3 16.7 193 156-360 16-221 (585)
117 TIGR02881 spore_V_K stage V sp 98.0 5.4E-05 1.2E-09 78.9 12.7 153 157-331 7-194 (261)
118 PRK03992 proteasome-activating 98.0 4.9E-05 1.1E-09 83.7 12.8 171 156-354 131-337 (389)
119 KOG4341 F-box protein containi 98.0 4.2E-07 9E-12 94.4 -3.4 259 563-871 139-416 (483)
120 PRK06305 DNA polymerase III su 98.0 0.00014 3E-09 81.4 16.2 180 156-360 17-223 (451)
121 PLN03150 hypothetical protein; 98.0 1.3E-05 2.9E-10 93.9 8.1 109 517-625 419-532 (623)
122 COG2255 RuvB Holliday junction 98.0 0.00064 1.4E-08 67.9 18.3 190 156-363 26-226 (332)
123 TIGR02880 cbbX_cfxQ probable R 98.0 0.0001 2.2E-09 77.4 13.8 154 157-330 23-210 (284)
124 PRK14948 DNA polymerase III su 98.0 0.00018 3.9E-09 83.4 16.8 194 156-360 16-222 (620)
125 PF12799 LRR_4: Leucine Rich r 98.0 8.5E-06 1.8E-10 58.0 3.7 39 563-601 2-40 (44)
126 KOG0989 Replication factor C, 98.0 4.9E-05 1.1E-09 76.4 10.3 182 155-354 35-224 (346)
127 PF05621 TniB: Bacterial TniB 97.9 0.00023 4.9E-09 73.0 15.1 200 156-359 34-260 (302)
128 CHL00181 cbbX CbbX; Provisiona 97.9 0.0002 4.4E-09 75.1 15.1 155 157-331 24-212 (287)
129 TIGR00362 DnaA chromosomal rep 97.9 0.00015 3.4E-09 80.8 14.4 159 177-357 136-307 (405)
130 PRK14965 DNA polymerase III su 97.9 0.00018 3.9E-09 83.2 14.4 196 156-363 16-224 (576)
131 PRK06647 DNA polymerase III su 97.8 0.00032 6.9E-09 80.4 15.9 191 156-358 16-218 (563)
132 PRK14088 dnaA chromosomal repl 97.8 0.00011 2.4E-09 82.2 12.0 179 157-357 107-302 (440)
133 PRK11331 5-methylcytosine-spec 97.8 0.00011 2.4E-09 79.8 11.6 69 156-227 175-243 (459)
134 PRK12422 chromosomal replicati 97.8 0.00025 5.3E-09 79.1 14.5 153 177-353 141-306 (445)
135 COG4886 Leucine-rich repeat (L 97.8 1.2E-05 2.6E-10 89.9 4.2 172 516-707 116-289 (394)
136 PRK06620 hypothetical protein; 97.8 7.2E-05 1.6E-09 74.9 9.2 133 178-357 45-186 (214)
137 PHA02544 44 clamp loader, smal 97.8 0.00023 5E-09 76.8 13.8 145 156-326 21-171 (316)
138 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00025 5.5E-09 85.5 15.0 154 156-328 187-363 (852)
139 PRK15386 type III secretion pr 97.8 8.3E-05 1.8E-09 79.9 9.5 63 559-626 49-112 (426)
140 PF12799 LRR_4: Leucine Rich r 97.8 2.8E-05 6E-10 55.4 4.0 41 585-626 1-41 (44)
141 KOG2543 Origin recognition com 97.8 0.00016 3.4E-09 75.0 11.0 163 155-327 5-192 (438)
142 KOG2227 Pre-initiation complex 97.8 0.0014 3.1E-08 70.0 18.2 203 155-362 149-374 (529)
143 PRK00149 dnaA chromosomal repl 97.8 0.00015 3.2E-09 82.1 11.8 159 177-357 148-319 (450)
144 KOG2982 Uncharacterized conser 97.8 1.6E-05 3.5E-10 79.0 3.3 35 747-781 246-287 (418)
145 PF14516 AAA_35: AAA-like doma 97.8 0.002 4.3E-08 69.5 19.7 202 155-367 10-246 (331)
146 PTZ00454 26S protease regulato 97.8 0.00045 9.8E-09 75.7 14.7 172 156-354 145-351 (398)
147 PRK14086 dnaA chromosomal repl 97.8 0.00051 1.1E-08 77.9 15.3 158 177-356 314-484 (617)
148 PRK05563 DNA polymerase III su 97.7 0.0007 1.5E-08 78.0 16.5 190 156-357 16-217 (559)
149 PTZ00361 26 proteosome regulat 97.7 0.00015 3.3E-09 80.0 10.5 171 156-353 183-388 (438)
150 KOG1909 Ran GTPase-activating 97.7 1.7E-05 3.7E-10 81.0 2.6 86 534-619 26-131 (382)
151 KOG1909 Ran GTPase-activating 97.7 4.3E-06 9.4E-11 85.2 -1.8 95 715-820 208-309 (382)
152 KOG4579 Leucine-rich repeat (L 97.7 7.1E-06 1.5E-10 72.1 -0.8 107 520-627 31-141 (177)
153 TIGR03689 pup_AAA proteasome A 97.7 0.00039 8.4E-09 77.9 12.5 162 156-330 182-380 (512)
154 PRK07399 DNA polymerase III su 97.7 0.0013 2.8E-08 70.0 15.9 197 156-360 4-221 (314)
155 TIGR02639 ClpA ATP-dependent C 97.7 0.00017 3.8E-09 86.4 10.5 154 156-328 182-358 (731)
156 PF05673 DUF815: Protein of un 97.6 0.00051 1.1E-08 68.2 11.5 46 156-201 27-76 (249)
157 KOG0531 Protein phosphatase 1, 97.6 8E-06 1.7E-10 91.5 -1.3 123 517-644 73-197 (414)
158 COG3267 ExeA Type II secretory 97.6 0.0026 5.7E-08 62.9 15.8 182 175-361 49-246 (269)
159 COG0466 Lon ATP-dependent Lon 97.6 0.0043 9.3E-08 70.1 18.5 157 156-328 323-508 (782)
160 KOG1859 Leucine-rich repeat pr 97.6 2.4E-06 5.2E-11 94.5 -6.6 180 508-706 101-290 (1096)
161 PRK05707 DNA polymerase III su 97.5 0.0013 2.9E-08 70.2 14.1 95 258-360 105-203 (328)
162 CHL00095 clpC Clp protease ATP 97.5 0.00064 1.4E-08 82.6 13.1 154 156-327 179-353 (821)
163 TIGR01241 FtsH_fam ATP-depende 97.5 0.0015 3.3E-08 74.8 15.5 172 156-354 55-260 (495)
164 PRK15386 type III secretion pr 97.5 0.00032 7E-09 75.4 8.7 32 809-843 156-187 (426)
165 COG1222 RPT1 ATP-dependent 26S 97.5 0.00097 2.1E-08 68.9 11.7 181 157-365 152-372 (406)
166 PRK10865 protein disaggregatio 97.5 0.00067 1.4E-08 82.3 12.2 46 156-201 178-223 (857)
167 PF00004 AAA: ATPase family as 97.5 0.00046 1E-08 63.5 8.4 22 180-201 1-22 (132)
168 KOG1644 U2-associated snRNP A' 97.5 0.00018 3.8E-09 68.1 5.2 102 517-618 43-150 (233)
169 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00063 1.4E-08 82.8 11.3 154 156-328 173-349 (852)
170 COG0593 DnaA ATPase involved i 97.4 0.0015 3.3E-08 70.4 12.8 140 176-337 112-266 (408)
171 PRK08116 hypothetical protein; 97.4 0.00024 5.1E-09 73.8 6.3 103 178-298 115-221 (268)
172 KOG1859 Leucine-rich repeat pr 97.4 6.9E-06 1.5E-10 91.0 -5.3 125 514-643 162-289 (1096)
173 PRK11034 clpA ATP-dependent Cl 97.4 0.0015 3.3E-08 77.3 13.7 155 157-328 187-362 (758)
174 COG1373 Predicted ATPase (AAA+ 97.4 0.0026 5.5E-08 70.2 14.6 163 161-359 22-191 (398)
175 PRK08769 DNA polymerase III su 97.4 0.0047 1E-07 65.4 15.8 180 163-361 11-209 (319)
176 TIGR00763 lon ATP-dependent pr 97.4 0.0078 1.7E-07 72.8 19.3 46 156-201 320-371 (775)
177 KOG0531 Protein phosphatase 1, 97.4 3.8E-05 8.2E-10 86.1 -0.3 105 512-619 91-197 (414)
178 CHL00176 ftsH cell division pr 97.4 0.002 4.3E-08 74.9 13.7 170 156-352 183-386 (638)
179 KOG3665 ZYG-1-like serine/thre 97.3 0.00015 3.2E-09 85.0 4.1 104 516-620 122-232 (699)
180 KOG3665 ZYG-1-like serine/thre 97.3 0.00012 2.6E-09 85.7 2.9 104 538-643 122-230 (699)
181 PRK08058 DNA polymerase III su 97.3 0.005 1.1E-07 66.3 15.1 159 157-326 6-180 (329)
182 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0028 6E-08 69.8 12.7 91 156-269 190-292 (802)
183 PRK08118 topology modulation p 97.3 0.00016 3.5E-09 69.4 3.0 36 178-213 2-37 (167)
184 smart00382 AAA ATPases associa 97.2 0.00096 2.1E-08 62.1 7.8 87 178-271 3-90 (148)
185 TIGR00602 rad24 checkpoint pro 97.2 0.0015 3.3E-08 75.3 10.3 46 156-201 84-134 (637)
186 PRK12608 transcription termina 97.2 0.0023 4.9E-08 68.2 10.8 103 165-269 120-230 (380)
187 KOG0741 AAA+-type ATPase [Post 97.2 0.0059 1.3E-07 66.1 13.4 145 176-350 537-704 (744)
188 PRK06871 DNA polymerase III su 97.2 0.013 2.7E-07 62.3 16.0 173 164-357 10-200 (325)
189 PRK10536 hypothetical protein; 97.2 0.00092 2E-08 67.3 7.1 54 157-213 56-109 (262)
190 PRK06835 DNA replication prote 97.2 0.0071 1.5E-07 64.5 14.0 37 177-216 183-219 (329)
191 PF04665 Pox_A32: Poxvirus A32 97.1 0.0016 3.4E-08 65.3 8.3 36 178-216 14-49 (241)
192 KOG2982 Uncharacterized conser 97.1 0.00061 1.3E-08 68.2 5.2 85 535-619 68-157 (418)
193 KOG4579 Leucine-rich repeat (L 97.1 0.0001 2.2E-09 65.0 -0.2 102 539-642 28-132 (177)
194 PF13177 DNA_pol3_delta2: DNA 97.1 0.0037 8E-08 59.6 10.3 136 160-315 1-161 (162)
195 PRK10787 DNA-binding ATP-depen 97.1 0.007 1.5E-07 72.4 14.8 47 155-201 321-373 (784)
196 PRK12377 putative replication 97.1 0.0013 2.9E-08 66.9 7.6 74 176-269 100-173 (248)
197 PF10443 RNA12: RNA12 protein; 97.1 0.023 4.9E-07 61.3 16.6 200 161-372 1-290 (431)
198 KOG0991 Replication factor C, 97.1 0.0022 4.8E-08 61.9 8.0 67 156-223 27-93 (333)
199 PRK06090 DNA polymerase III su 97.0 0.021 4.5E-07 60.5 16.0 175 164-360 11-201 (319)
200 TIGR02640 gas_vesic_GvpN gas v 97.0 0.012 2.6E-07 61.3 14.1 54 164-225 10-63 (262)
201 PRK07261 topology modulation p 97.0 0.0029 6.2E-08 61.1 8.7 67 179-270 2-68 (171)
202 TIGR01243 CDC48 AAA family ATP 97.0 0.0046 9.9E-08 74.5 12.4 173 157-356 179-383 (733)
203 PRK08181 transposase; Validate 97.0 0.00077 1.7E-08 69.6 4.8 72 177-269 106-177 (269)
204 COG2812 DnaX DNA polymerase II 96.9 0.0043 9.4E-08 69.2 10.0 186 156-355 16-215 (515)
205 PRK07993 DNA polymerase III su 96.9 0.023 5.1E-07 60.9 15.2 176 164-358 10-202 (334)
206 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0082 1.8E-07 67.6 12.0 173 156-354 228-429 (489)
207 PRK10865 protein disaggregatio 96.9 0.038 8.3E-07 67.3 18.4 46 156-201 568-622 (857)
208 KOG1514 Origin recognition com 96.8 0.036 7.7E-07 62.7 16.1 198 156-363 396-624 (767)
209 PRK06921 hypothetical protein; 96.8 0.00092 2E-08 69.3 3.7 39 176-216 116-154 (266)
210 PRK04296 thymidine kinase; Pro 96.8 0.0014 3E-08 64.5 4.7 113 178-299 3-117 (190)
211 TIGR01243 CDC48 AAA family ATP 96.8 0.014 3E-07 70.5 14.0 172 156-354 453-657 (733)
212 COG1223 Predicted ATPase (AAA+ 96.8 0.012 2.6E-07 58.0 10.7 171 156-354 121-319 (368)
213 PRK09361 radB DNA repair and r 96.7 0.0071 1.5E-07 61.6 9.3 46 176-225 22-67 (225)
214 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0058 1.3E-07 74.6 10.0 60 156-218 565-633 (852)
215 TIGR02639 ClpA ATP-dependent C 96.7 0.014 2.9E-07 70.3 13.0 47 155-201 453-508 (731)
216 PRK06964 DNA polymerase III su 96.7 0.054 1.2E-06 58.0 16.0 91 258-360 131-225 (342)
217 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0022 4.7E-08 68.1 5.3 45 157-201 52-102 (361)
218 PF01695 IstB_IS21: IstB-like 96.7 0.0013 2.9E-08 63.7 3.5 37 176-215 46-82 (178)
219 PF02562 PhoH: PhoH-like prote 96.7 0.0037 7.9E-08 61.3 6.5 129 161-299 5-157 (205)
220 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0036 7.7E-08 75.8 7.6 47 155-201 565-620 (852)
221 PF13207 AAA_17: AAA domain; P 96.7 0.0015 3.3E-08 59.1 3.5 23 179-201 1-23 (121)
222 PRK09183 transposase/IS protei 96.6 0.0018 3.9E-08 67.0 4.3 26 176-201 101-126 (259)
223 PF00448 SRP54: SRP54-type pro 96.6 0.006 1.3E-07 60.1 7.7 89 177-268 1-92 (196)
224 cd01393 recA_like RecA is a b 96.6 0.018 3.9E-07 58.7 11.6 89 176-268 18-123 (226)
225 PRK06526 transposase; Provisio 96.6 0.0021 4.5E-08 66.1 4.5 26 176-201 97-122 (254)
226 KOG2228 Origin recognition com 96.6 0.02 4.3E-07 58.9 10.9 170 156-328 24-219 (408)
227 PF07693 KAP_NTPase: KAP famil 96.6 0.078 1.7E-06 57.4 16.8 40 162-201 2-44 (325)
228 KOG2123 Uncharacterized conser 96.5 0.00022 4.7E-09 70.6 -3.0 102 537-641 18-125 (388)
229 TIGR02237 recomb_radB DNA repa 96.5 0.015 3.2E-07 58.5 10.1 48 176-227 11-58 (209)
230 PRK04132 replication factor C 96.5 0.034 7.4E-07 66.3 14.4 151 185-358 574-729 (846)
231 KOG0730 AAA+-type ATPase [Post 96.5 0.028 6.1E-07 63.1 12.7 165 156-343 434-630 (693)
232 cd01394 radB RadB. The archaea 96.5 0.02 4.3E-07 58.0 11.0 43 176-221 18-60 (218)
233 cd01133 F1-ATPase_beta F1 ATP 96.5 0.012 2.6E-07 60.4 9.1 92 175-269 67-173 (274)
234 KOG0733 Nuclear AAA ATPase (VC 96.5 0.026 5.5E-07 62.6 11.9 154 176-354 544-718 (802)
235 TIGR02012 tigrfam_recA protein 96.4 0.0094 2E-07 62.9 8.0 86 176-269 54-143 (321)
236 KOG0731 AAA+-type ATPase conta 96.4 0.033 7.1E-07 64.5 12.9 175 157-358 312-522 (774)
237 COG0470 HolB ATPase involved i 96.4 0.016 3.5E-07 62.8 10.3 123 157-298 2-149 (325)
238 COG2607 Predicted ATPase (AAA+ 96.4 0.012 2.5E-07 57.6 7.9 46 156-201 60-109 (287)
239 CHL00095 clpC Clp protease ATP 96.4 0.013 2.9E-07 71.2 10.3 105 155-270 508-622 (821)
240 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.024 5.1E-07 58.2 10.7 91 176-268 18-124 (235)
241 KOG1644 U2-associated snRNP A' 96.4 0.0042 9.1E-08 59.0 4.5 102 539-643 43-150 (233)
242 PF06309 Torsin: Torsin; Inte 96.4 0.019 4.2E-07 50.9 8.4 45 157-201 26-77 (127)
243 PRK05541 adenylylsulfate kinas 96.4 0.01 2.2E-07 57.8 7.4 36 176-214 6-41 (176)
244 PRK12727 flagellar biosynthesi 96.3 0.12 2.7E-06 57.7 16.4 89 176-269 349-438 (559)
245 COG1484 DnaC DNA replication p 96.3 0.016 3.5E-07 59.6 9.1 89 161-269 88-177 (254)
246 COG0542 clpA ATP-binding subun 96.3 0.0076 1.7E-07 70.1 7.3 104 156-270 491-604 (786)
247 PRK06696 uridine kinase; Valid 96.3 0.0055 1.2E-07 62.2 5.6 42 160-201 2-46 (223)
248 cd00983 recA RecA is a bacter 96.3 0.011 2.4E-07 62.4 7.8 85 176-268 54-142 (325)
249 KOG0728 26S proteasome regulat 96.3 0.054 1.2E-06 53.0 11.7 145 158-329 148-332 (404)
250 PRK09354 recA recombinase A; P 96.3 0.013 2.8E-07 62.4 8.2 86 176-269 59-148 (349)
251 PRK07952 DNA replication prote 96.3 0.026 5.6E-07 57.5 9.9 87 165-270 85-173 (244)
252 KOG1947 Leucine rich repeat pr 96.3 0.0014 3.1E-08 75.4 1.0 35 537-571 187-223 (482)
253 PRK08939 primosomal protein Dn 96.2 0.016 3.5E-07 61.4 8.6 116 160-297 135-260 (306)
254 PF14532 Sigma54_activ_2: Sigm 96.2 0.0029 6.3E-08 58.7 2.7 43 159-201 1-45 (138)
255 KOG0652 26S proteasome regulat 96.2 0.074 1.6E-06 52.5 12.2 52 150-201 163-229 (424)
256 COG0572 Udk Uridine kinase [Nu 96.2 0.014 3.1E-07 57.2 7.4 79 176-260 7-85 (218)
257 PRK06762 hypothetical protein; 96.2 0.062 1.3E-06 51.6 11.7 25 177-201 2-26 (166)
258 cd01131 PilT Pilus retraction 96.2 0.0058 1.3E-07 60.6 4.6 110 178-301 2-112 (198)
259 TIGR03877 thermo_KaiC_1 KaiC d 96.0 0.042 9.2E-07 56.3 10.4 48 176-228 20-67 (237)
260 KOG2739 Leucine-rich acidic nu 96.0 0.0037 8E-08 62.1 2.4 87 558-645 61-155 (260)
261 cd03238 ABC_UvrA The excision 96.0 0.02 4.4E-07 55.3 7.4 125 176-312 20-161 (176)
262 PRK10733 hflB ATP-dependent me 96.0 0.075 1.6E-06 62.8 13.6 152 157-331 153-338 (644)
263 KOG0736 Peroxisome assembly fa 96.0 0.24 5.3E-06 56.7 16.6 92 156-270 672-775 (953)
264 cd01120 RecA-like_NTPases RecA 96.0 0.036 7.9E-07 52.9 9.2 40 179-221 1-40 (165)
265 PRK15455 PrkA family serine pr 96.0 0.008 1.7E-07 67.2 4.9 45 157-201 77-127 (644)
266 cd03216 ABC_Carb_Monos_I This 96.0 0.011 2.3E-07 56.7 5.2 116 176-301 25-145 (163)
267 PRK06547 hypothetical protein; 95.9 0.01 2.3E-07 57.0 5.1 35 167-201 5-39 (172)
268 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.041 8.9E-07 51.6 8.8 117 178-299 3-139 (159)
269 PRK11034 clpA ATP-dependent Cl 95.9 0.026 5.6E-07 67.1 9.3 46 156-201 458-512 (758)
270 PRK08699 DNA polymerase III su 95.9 0.077 1.7E-06 56.8 12.0 69 258-327 112-184 (325)
271 cd03115 SRP The signal recogni 95.9 0.029 6.3E-07 54.4 8.2 23 179-201 2-24 (173)
272 PF08423 Rad51: Rad51; InterP 95.9 0.063 1.4E-06 55.4 11.0 92 176-268 37-142 (256)
273 KOG1969 DNA replication checkp 95.9 0.018 3.9E-07 65.1 7.3 72 176-270 325-398 (877)
274 PRK00771 signal recognition pa 95.9 0.051 1.1E-06 60.3 10.8 90 176-269 94-185 (437)
275 COG0542 clpA ATP-binding subun 95.9 0.023 4.9E-07 66.3 8.3 152 157-327 171-345 (786)
276 KOG0735 AAA+-type ATPase [Post 95.9 0.02 4.3E-07 64.5 7.4 73 176-269 430-504 (952)
277 cd03246 ABCC_Protease_Secretio 95.9 0.015 3.2E-07 56.4 5.9 26 176-201 27-52 (173)
278 COG1102 Cmk Cytidylate kinase 95.9 0.023 4.9E-07 52.2 6.4 45 179-237 2-46 (179)
279 KOG2739 Leucine-rich acidic nu 95.8 0.0058 1.3E-07 60.7 2.8 104 515-619 42-154 (260)
280 cd01121 Sms Sms (bacterial rad 95.8 0.041 9E-07 59.9 9.7 84 176-268 81-167 (372)
281 PLN00020 ribulose bisphosphate 95.8 0.024 5.1E-07 60.0 7.4 27 175-201 146-172 (413)
282 PF00485 PRK: Phosphoribulokin 95.8 0.049 1.1E-06 53.9 9.4 82 179-263 1-87 (194)
283 TIGR02238 recomb_DMC1 meiotic 95.8 0.067 1.4E-06 56.9 10.9 92 176-268 95-200 (313)
284 PRK06067 flagellar accessory p 95.8 0.061 1.3E-06 55.0 10.4 88 176-269 24-130 (234)
285 KOG0734 AAA+-type ATPase conta 95.8 0.021 4.5E-07 62.1 6.9 45 157-201 305-361 (752)
286 PRK05800 cobU adenosylcobinami 95.8 0.0075 1.6E-07 57.9 3.3 82 179-268 3-85 (170)
287 KOG0744 AAA+-type ATPase [Post 95.8 0.032 7E-07 56.9 7.8 80 177-269 177-260 (423)
288 KOG1947 Leucine rich repeat pr 95.7 0.0017 3.6E-08 74.9 -1.7 87 558-644 184-280 (482)
289 PF00154 RecA: recA bacterial 95.7 0.13 2.9E-06 54.2 12.5 94 168-269 41-141 (322)
290 PHA00729 NTP-binding motif con 95.7 0.014 3.1E-07 57.9 5.1 35 167-201 7-41 (226)
291 PTZ00301 uridine kinase; Provi 95.7 0.019 4.2E-07 57.1 6.1 25 177-201 3-27 (210)
292 cd03247 ABCC_cytochrome_bd The 95.7 0.035 7.5E-07 54.1 7.8 127 176-312 27-169 (178)
293 PRK04301 radA DNA repair and r 95.7 0.09 2E-06 56.5 11.6 57 176-234 101-161 (317)
294 COG1618 Predicted nucleotide k 95.7 0.0086 1.9E-07 54.8 3.1 24 178-201 6-29 (179)
295 KOG2004 Mitochondrial ATP-depe 95.7 0.019 4.1E-07 64.7 6.3 64 156-225 411-480 (906)
296 PRK10867 signal recognition pa 95.7 0.047 1E-06 60.4 9.3 91 175-268 98-192 (433)
297 COG4608 AppF ABC-type oligopep 95.7 0.049 1.1E-06 55.0 8.6 124 176-305 38-177 (268)
298 TIGR03499 FlhF flagellar biosy 95.6 0.051 1.1E-06 57.1 9.1 88 176-268 193-281 (282)
299 PRK12678 transcription termina 95.6 0.02 4.4E-07 63.8 6.1 100 168-269 406-513 (672)
300 PRK04328 hypothetical protein; 95.6 0.059 1.3E-06 55.6 9.3 41 176-219 22-62 (249)
301 COG2884 FtsE Predicted ATPase 95.6 0.066 1.4E-06 50.7 8.5 54 251-305 147-204 (223)
302 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.1 2.2E-06 53.3 10.9 41 176-219 19-59 (229)
303 PRK14974 cell division protein 95.6 0.099 2.1E-06 55.9 11.0 90 176-269 139-232 (336)
304 PF13238 AAA_18: AAA domain; P 95.5 0.01 2.2E-07 54.2 3.2 22 180-201 1-22 (129)
305 COG0464 SpoVK ATPases of the A 95.5 0.16 3.4E-06 58.5 13.6 153 157-332 243-427 (494)
306 TIGR00959 ffh signal recogniti 95.5 0.061 1.3E-06 59.5 9.6 91 176-269 98-192 (428)
307 PRK13531 regulatory ATPase Rav 95.5 0.019 4.1E-07 63.4 5.6 44 156-201 20-63 (498)
308 cd03214 ABC_Iron-Siderophores_ 95.5 0.035 7.7E-07 54.2 7.1 121 176-301 24-161 (180)
309 TIGR00390 hslU ATP-dependent p 95.5 0.03 6.6E-07 60.6 6.9 46 156-201 12-71 (441)
310 PRK07667 uridine kinase; Provi 95.5 0.019 4.1E-07 56.7 5.0 37 165-201 3-41 (193)
311 cd03222 ABC_RNaseL_inhibitor T 95.5 0.02 4.3E-07 55.3 4.9 27 175-201 23-49 (177)
312 PRK11889 flhF flagellar biosyn 95.5 0.072 1.6E-06 57.2 9.4 89 176-269 240-330 (436)
313 TIGR00235 udk uridine kinase. 95.4 0.037 8E-07 55.4 7.0 26 176-201 5-30 (207)
314 COG0468 RecA RecA/RadA recombi 95.4 0.081 1.7E-06 54.6 9.5 88 176-268 59-150 (279)
315 TIGR02858 spore_III_AA stage I 95.4 0.096 2.1E-06 54.3 10.1 127 166-301 99-232 (270)
316 PF00560 LRR_1: Leucine Rich R 95.4 0.007 1.5E-07 35.7 1.0 19 564-582 2-20 (22)
317 COG5238 RNA1 Ran GTPase-activa 95.4 0.015 3.3E-07 57.8 3.8 87 537-624 29-135 (388)
318 PRK14722 flhF flagellar biosyn 95.4 0.059 1.3E-06 58.2 8.7 89 176-269 136-225 (374)
319 cd02019 NK Nucleoside/nucleoti 95.4 0.013 2.9E-07 46.7 2.9 23 179-201 1-23 (69)
320 PRK10463 hydrogenase nickel in 95.4 0.059 1.3E-06 55.8 8.3 35 167-201 94-128 (290)
321 TIGR02236 recomb_radA DNA repa 95.4 0.14 3E-06 54.9 11.7 58 176-235 94-155 (310)
322 PRK08233 hypothetical protein; 95.4 0.014 3E-07 57.2 3.6 25 177-201 3-27 (182)
323 PF01583 APS_kinase: Adenylyls 95.4 0.019 4.1E-07 53.6 4.2 36 177-215 2-37 (156)
324 KOG2170 ATPase of the AAA+ sup 95.3 0.03 6.5E-07 56.8 5.8 45 157-201 83-134 (344)
325 cd03230 ABC_DR_subfamily_A Thi 95.3 0.045 9.7E-07 53.0 7.1 120 176-302 25-159 (173)
326 COG1066 Sms Predicted ATP-depe 95.3 0.11 2.3E-06 55.4 10.0 94 165-268 79-177 (456)
327 PRK09270 nucleoside triphospha 95.3 0.023 5.1E-07 57.8 5.2 27 175-201 31-57 (229)
328 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.051 1.1E-06 50.7 7.0 103 176-301 25-130 (144)
329 cd03229 ABC_Class3 This class 95.3 0.022 4.7E-07 55.5 4.8 26 176-201 25-50 (178)
330 COG0563 Adk Adenylate kinase a 95.3 0.034 7.3E-07 53.7 5.9 23 179-201 2-24 (178)
331 cd03223 ABCD_peroxisomal_ALDP 95.3 0.062 1.4E-06 51.6 7.8 123 176-312 26-160 (166)
332 PRK12726 flagellar biosynthesi 95.3 0.17 3.7E-06 54.3 11.6 89 176-269 205-295 (407)
333 cd03228 ABCC_MRP_Like The MRP 95.3 0.064 1.4E-06 51.8 7.9 26 176-201 27-52 (171)
334 PRK12723 flagellar biosynthesi 95.3 0.093 2E-06 57.3 9.8 89 176-269 173-264 (388)
335 PLN03186 DNA repair protein RA 95.3 0.13 2.9E-06 55.2 10.8 60 176-236 122-184 (342)
336 TIGR02239 recomb_RAD51 DNA rep 95.2 0.12 2.6E-06 55.1 10.4 59 176-235 95-156 (316)
337 KOG0729 26S proteasome regulat 95.2 0.054 1.2E-06 53.5 7.0 45 157-201 178-235 (435)
338 PRK06002 fliI flagellum-specif 95.2 0.073 1.6E-06 58.6 8.9 90 176-269 164-264 (450)
339 TIGR00064 ftsY signal recognit 95.2 0.1 2.2E-06 54.4 9.6 91 175-269 70-164 (272)
340 KOG0743 AAA+-type ATPase [Post 95.2 0.23 5E-06 53.7 12.2 149 178-365 236-414 (457)
341 PLN03187 meiotic recombination 95.2 0.16 3.6E-06 54.4 11.3 92 176-268 125-230 (344)
342 cd01135 V_A-ATPase_B V/A-type 95.2 0.12 2.5E-06 53.1 9.6 95 175-269 67-176 (276)
343 PTZ00088 adenylate kinase 1; P 95.2 0.022 4.7E-07 57.5 4.4 23 179-201 8-30 (229)
344 TIGR00554 panK_bact pantothena 95.2 0.12 2.6E-06 54.0 10.0 27 175-201 60-86 (290)
345 PF00006 ATP-synt_ab: ATP synt 95.2 0.11 2.3E-06 51.8 9.1 95 169-268 6-114 (215)
346 PRK05480 uridine/cytidine kina 95.2 0.018 3.9E-07 57.8 3.7 27 175-201 4-30 (209)
347 PF13671 AAA_33: AAA domain; P 95.1 0.018 3.9E-07 53.8 3.4 23 179-201 1-23 (143)
348 PRK05201 hslU ATP-dependent pr 95.1 0.054 1.2E-06 58.7 7.2 79 155-233 14-107 (443)
349 COG1136 SalX ABC-type antimicr 95.1 0.086 1.9E-06 52.4 8.0 55 250-304 151-209 (226)
350 PRK07132 DNA polymerase III su 95.1 0.61 1.3E-05 49.1 14.9 167 165-359 5-184 (299)
351 KOG2035 Replication factor C, 95.0 0.48 1E-05 47.7 12.9 209 157-383 14-261 (351)
352 PF12775 AAA_7: P-loop contain 95.0 0.043 9.3E-07 57.1 6.2 35 166-201 23-57 (272)
353 PF00560 LRR_1: Leucine Rich R 95.0 0.0078 1.7E-07 35.5 0.4 20 586-605 1-20 (22)
354 PF07726 AAA_3: ATPase family 95.0 0.016 3.5E-07 51.6 2.5 27 180-209 2-28 (131)
355 PTZ00035 Rad51 protein; Provis 95.0 0.22 4.8E-06 53.6 11.7 58 176-235 117-178 (337)
356 PRK03839 putative kinase; Prov 95.0 0.02 4.4E-07 55.9 3.4 23 179-201 2-24 (180)
357 PF13481 AAA_25: AAA domain; P 94.9 0.12 2.5E-06 51.1 8.9 43 177-219 32-81 (193)
358 PF07728 AAA_5: AAA domain (dy 94.9 0.055 1.2E-06 50.2 6.1 42 180-227 2-43 (139)
359 TIGR00150 HI0065_YjeE ATPase, 94.9 0.045 9.7E-07 49.7 5.2 38 164-201 7-46 (133)
360 cd01124 KaiC KaiC is a circadi 94.9 0.097 2.1E-06 51.4 8.2 38 179-219 1-38 (187)
361 PRK00889 adenylylsulfate kinas 94.9 0.088 1.9E-06 51.1 7.7 26 176-201 3-28 (175)
362 PRK11823 DNA repair protein Ra 94.9 0.084 1.8E-06 59.3 8.5 94 166-268 67-165 (446)
363 cd01129 PulE-GspE PulE/GspE Th 94.9 0.056 1.2E-06 56.1 6.6 105 159-276 62-166 (264)
364 PF06745 KaiC: KaiC; InterPro 94.9 0.057 1.2E-06 54.9 6.6 87 176-268 18-124 (226)
365 PRK06217 hypothetical protein; 94.9 0.043 9.2E-07 53.7 5.3 23 179-201 3-25 (183)
366 cd02025 PanK Pantothenate kina 94.8 0.12 2.7E-06 52.0 8.6 23 179-201 1-23 (220)
367 KOG3347 Predicted nucleotide k 94.8 0.045 9.8E-07 49.4 4.6 69 177-258 7-75 (176)
368 TIGR01360 aden_kin_iso1 adenyl 94.7 0.026 5.6E-07 55.6 3.5 26 176-201 2-27 (188)
369 COG4618 ArpD ABC-type protease 94.7 0.043 9.4E-07 59.7 5.3 26 176-201 361-386 (580)
370 PRK08972 fliI flagellum-specif 94.7 0.063 1.4E-06 58.8 6.7 89 176-269 161-262 (444)
371 PF00158 Sigma54_activat: Sigm 94.7 0.073 1.6E-06 51.0 6.4 58 158-218 1-60 (168)
372 cd02028 UMPK_like Uridine mono 94.7 0.06 1.3E-06 52.3 5.9 23 179-201 1-23 (179)
373 PRK04040 adenylate kinase; Pro 94.7 0.027 5.9E-07 55.1 3.5 24 178-201 3-26 (188)
374 PRK05439 pantothenate kinase; 94.7 0.21 4.6E-06 52.6 10.3 27 175-201 84-110 (311)
375 COG4088 Predicted nucleotide k 94.7 0.033 7.1E-07 53.2 3.8 24 178-201 2-25 (261)
376 PRK12597 F0F1 ATP synthase sub 94.7 0.12 2.7E-06 57.4 8.9 93 175-269 141-247 (461)
377 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.044 9.6E-07 52.1 4.8 119 176-303 24-145 (157)
378 KOG0735 AAA+-type ATPase [Post 94.7 0.65 1.4E-05 52.9 14.2 172 157-355 668-871 (952)
379 TIGR00416 sms DNA repair prote 94.7 0.14 3E-06 57.6 9.5 50 166-218 81-132 (454)
380 PRK13765 ATP-dependent proteas 94.7 0.063 1.4E-06 62.4 6.9 74 156-234 31-104 (637)
381 KOG0651 26S proteasome regulat 94.7 0.072 1.6E-06 54.3 6.3 26 176-201 165-190 (388)
382 TIGR03498 FliI_clade3 flagella 94.7 0.077 1.7E-06 58.4 7.1 91 175-269 138-240 (418)
383 PF00910 RNA_helicase: RNA hel 94.6 0.023 5.1E-07 49.9 2.6 22 180-201 1-22 (107)
384 PRK09519 recA DNA recombinatio 94.6 0.14 3.1E-06 60.3 9.7 86 176-269 59-148 (790)
385 PRK00625 shikimate kinase; Pro 94.6 0.027 5.8E-07 54.2 3.2 23 179-201 2-24 (173)
386 PRK15453 phosphoribulokinase; 94.6 0.16 3.4E-06 52.2 8.8 80 176-258 4-89 (290)
387 cd02027 APSK Adenosine 5'-phos 94.6 0.18 3.8E-06 47.4 8.5 23 179-201 1-23 (149)
388 PRK08927 fliI flagellum-specif 94.6 0.16 3.4E-06 56.1 9.2 89 176-269 157-258 (442)
389 PRK12724 flagellar biosynthesi 94.5 0.12 2.7E-06 56.2 8.3 25 177-201 223-247 (432)
390 PRK08533 flagellar accessory p 94.5 0.23 5E-06 50.5 9.9 49 176-229 23-71 (230)
391 COG0465 HflB ATP-dependent Zn 94.5 0.28 6.1E-06 55.9 11.4 46 156-201 150-207 (596)
392 TIGR00708 cobA cob(I)alamin ad 94.5 0.16 3.5E-06 48.3 8.0 117 177-299 5-141 (173)
393 cd03215 ABC_Carb_Monos_II This 94.5 0.059 1.3E-06 52.7 5.4 26 176-201 25-50 (182)
394 COG0194 Gmk Guanylate kinase [ 94.5 0.15 3.3E-06 48.4 7.7 25 177-201 4-28 (191)
395 cd00071 GMPK Guanosine monopho 94.5 0.06 1.3E-06 49.7 5.1 23 179-201 1-23 (137)
396 KOG2123 Uncharacterized conser 94.5 0.0033 7.1E-08 62.5 -3.4 98 515-614 18-123 (388)
397 cd01136 ATPase_flagellum-secre 94.5 0.2 4.2E-06 53.2 9.4 90 175-269 67-169 (326)
398 TIGR01359 UMP_CMP_kin_fam UMP- 94.5 0.027 5.8E-07 55.2 2.9 23 179-201 1-23 (183)
399 PF10236 DAP3: Mitochondrial r 94.5 1 2.2E-05 48.0 15.0 49 309-357 258-306 (309)
400 COG1428 Deoxynucleoside kinase 94.5 0.032 6.8E-07 54.0 3.1 25 177-201 4-28 (216)
401 TIGR00764 lon_rel lon-related 94.4 0.12 2.7E-06 60.3 8.6 74 156-234 18-91 (608)
402 COG1703 ArgK Putative periplas 94.4 0.054 1.2E-06 55.2 4.8 60 166-226 38-99 (323)
403 cd01132 F1_ATPase_alpha F1 ATP 94.4 0.097 2.1E-06 53.7 6.7 90 175-269 67-171 (274)
404 PTZ00185 ATPase alpha subunit; 94.4 0.25 5.4E-06 54.8 10.2 94 175-269 187-299 (574)
405 PRK05703 flhF flagellar biosyn 94.4 0.16 3.5E-06 56.5 9.0 87 177-268 221-308 (424)
406 TIGR02030 BchI-ChlI magnesium 94.4 0.059 1.3E-06 57.7 5.4 46 156-201 4-49 (337)
407 PRK05922 type III secretion sy 94.4 0.12 2.6E-06 56.9 7.8 90 175-269 155-257 (434)
408 PRK08149 ATP synthase SpaL; Va 94.4 0.18 4E-06 55.5 9.2 90 175-269 149-251 (428)
409 PTZ00494 tuzin-like protein; P 94.4 0.48 1E-05 51.1 11.8 164 154-328 369-544 (664)
410 KOG1051 Chaperone HSP104 and r 94.3 0.15 3.3E-06 60.6 9.0 101 156-270 562-671 (898)
411 cd02029 PRK_like Phosphoribulo 94.3 0.14 3E-06 52.2 7.5 79 179-260 1-85 (277)
412 COG0541 Ffh Signal recognition 94.3 3.4 7.5E-05 44.9 18.1 58 176-237 99-158 (451)
413 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.24 5.2E-06 51.4 9.6 40 176-218 35-74 (259)
414 TIGR03305 alt_F1F0_F1_bet alte 94.3 0.14 3.1E-06 56.5 8.3 93 175-269 136-242 (449)
415 PF13245 AAA_19: Part of AAA d 94.3 0.1 2.2E-06 42.4 5.4 26 176-201 9-34 (76)
416 PF08433 KTI12: Chromatin asso 94.3 0.11 2.3E-06 54.0 6.9 24 178-201 2-25 (270)
417 PRK05973 replicative DNA helic 94.3 0.26 5.7E-06 49.8 9.5 49 176-229 63-111 (237)
418 cd02024 NRK1 Nicotinamide ribo 94.3 0.032 6.9E-07 54.3 2.8 23 179-201 1-23 (187)
419 PRK10416 signal recognition pa 94.3 0.43 9.4E-06 50.9 11.7 26 176-201 113-138 (318)
420 PRK09280 F0F1 ATP synthase sub 94.3 0.18 3.9E-06 55.8 8.9 93 175-269 142-248 (463)
421 cd02023 UMPK Uridine monophosp 94.2 0.032 6.9E-07 55.5 2.8 23 179-201 1-23 (198)
422 TIGR01425 SRP54_euk signal rec 94.2 0.19 4.1E-06 55.3 9.0 26 176-201 99-124 (429)
423 COG2274 SunT ABC-type bacterio 94.2 0.13 2.9E-06 60.7 8.3 27 175-201 497-523 (709)
424 PF03308 ArgK: ArgK protein; 94.2 0.058 1.3E-06 54.2 4.6 60 165-225 15-76 (266)
425 TIGR02868 CydC thiol reductant 94.2 0.12 2.7E-06 60.1 8.1 27 175-201 359-385 (529)
426 cd03217 ABC_FeS_Assembly ABC-t 94.2 0.11 2.3E-06 51.7 6.5 25 176-200 25-49 (200)
427 CHL00081 chlI Mg-protoporyphyr 94.1 0.067 1.4E-06 57.3 5.1 46 156-201 17-62 (350)
428 TIGR02655 circ_KaiC circadian 94.1 0.27 6E-06 56.1 10.5 98 165-268 249-362 (484)
429 PRK00131 aroK shikimate kinase 94.1 0.045 9.7E-07 53.1 3.6 25 177-201 4-28 (175)
430 COG1124 DppF ABC-type dipeptid 94.1 0.06 1.3E-06 53.2 4.3 26 176-201 32-57 (252)
431 TIGR03575 selen_PSTK_euk L-ser 94.1 0.16 3.6E-06 54.2 8.0 22 180-201 2-23 (340)
432 KOG1532 GTPase XAB1, interacts 94.1 0.23 5E-06 49.7 8.3 26 176-201 18-43 (366)
433 PRK13407 bchI magnesium chelat 94.1 0.064 1.4E-06 57.4 4.9 46 156-201 8-53 (334)
434 TIGR01040 V-ATPase_V1_B V-type 94.1 0.21 4.5E-06 55.0 8.8 94 175-269 139-257 (466)
435 TIGR02322 phosphon_PhnN phosph 94.0 0.044 9.6E-07 53.4 3.4 24 178-201 2-25 (179)
436 PF00625 Guanylate_kin: Guanyl 94.0 0.075 1.6E-06 52.0 4.9 37 177-216 2-38 (183)
437 cd03281 ABC_MSH5_euk MutS5 hom 94.0 0.042 9E-07 55.1 3.1 24 177-200 29-52 (213)
438 PRK05986 cob(I)alamin adenolsy 94.0 0.27 5.8E-06 47.5 8.4 118 176-299 21-159 (191)
439 PRK09099 type III secretion sy 94.0 0.22 4.7E-06 55.2 8.8 91 175-269 161-263 (441)
440 COG3640 CooC CO dehydrogenase 94.0 0.1 2.2E-06 51.3 5.5 43 179-223 2-44 (255)
441 PRK15429 formate hydrogenlyase 93.9 0.11 2.5E-06 62.2 7.2 60 156-218 376-437 (686)
442 PF13306 LRR_5: Leucine rich r 93.9 0.19 4.1E-06 45.7 7.1 58 535-594 32-90 (129)
443 PRK06793 fliI flagellum-specif 93.9 0.24 5.2E-06 54.6 8.9 91 175-269 154-256 (432)
444 cd03213 ABCG_EPDR ABCG transpo 93.8 0.17 3.7E-06 50.0 7.2 26 176-201 34-59 (194)
445 TIGR01420 pilT_fam pilus retra 93.8 0.079 1.7E-06 57.5 5.2 112 176-300 121-232 (343)
446 cd00227 CPT Chloramphenicol (C 93.8 0.051 1.1E-06 52.7 3.4 24 178-201 3-26 (175)
447 TIGR03324 alt_F1F0_F1_al alter 93.8 0.23 5.1E-06 55.3 8.8 90 175-269 160-264 (497)
448 PF07724 AAA_2: AAA domain (Cd 93.8 0.052 1.1E-06 52.2 3.3 42 177-221 3-45 (171)
449 PRK13947 shikimate kinase; Pro 93.8 0.052 1.1E-06 52.5 3.4 23 179-201 3-25 (171)
450 COG1224 TIP49 DNA helicase TIP 93.8 0.19 4.1E-06 52.3 7.4 47 155-201 38-89 (450)
451 cd02020 CMPK Cytidine monophos 93.8 0.046 9.9E-07 51.2 2.9 23 179-201 1-23 (147)
452 cd02021 GntK Gluconate kinase 93.8 0.045 9.7E-07 51.6 2.8 23 179-201 1-23 (150)
453 COG1419 FlhF Flagellar GTP-bin 93.8 0.63 1.4E-05 50.2 11.5 88 176-268 202-290 (407)
454 PRK06851 hypothetical protein; 93.8 1.4 3E-05 47.7 14.3 56 156-217 197-252 (367)
455 TIGR01039 atpD ATP synthase, F 93.8 0.28 6.2E-06 54.2 9.2 93 175-269 141-247 (461)
456 PRK00279 adk adenylate kinase; 93.8 0.085 1.8E-06 53.2 4.9 23 179-201 2-24 (215)
457 COG1936 Predicted nucleotide k 93.8 0.048 1E-06 50.9 2.8 20 179-198 2-21 (180)
458 PRK10751 molybdopterin-guanine 93.7 0.063 1.4E-06 51.2 3.7 26 176-201 5-30 (173)
459 cd03369 ABCC_NFT1 Domain 2 of 93.7 0.35 7.5E-06 48.4 9.3 26 176-201 33-58 (207)
460 TIGR02902 spore_lonB ATP-depen 93.7 0.11 2.5E-06 59.7 6.5 44 157-200 66-109 (531)
461 PRK13949 shikimate kinase; Pro 93.7 0.053 1.2E-06 52.1 3.2 23 179-201 3-25 (169)
462 COG0529 CysC Adenylylsulfate k 93.7 0.1 2.2E-06 48.9 4.7 28 174-201 20-47 (197)
463 PRK05688 fliI flagellum-specif 93.7 0.26 5.7E-06 54.5 8.8 90 175-269 166-268 (451)
464 PF13086 AAA_11: AAA domain; P 93.7 0.13 2.8E-06 52.6 6.3 36 164-201 6-41 (236)
465 TIGR01069 mutS2 MutS2 family p 93.7 0.04 8.8E-07 65.9 2.8 114 258-382 401-522 (771)
466 PF08298 AAA_PrkA: PrkA AAA do 93.7 0.1 2.2E-06 55.1 5.3 46 156-201 61-112 (358)
467 PRK14721 flhF flagellar biosyn 93.6 0.4 8.7E-06 52.8 10.1 88 176-268 190-278 (420)
468 COG2842 Uncharacterized ATPase 93.6 0.36 7.7E-06 49.5 8.9 104 155-270 71-176 (297)
469 PRK03846 adenylylsulfate kinas 93.6 0.095 2.1E-06 52.0 4.8 27 175-201 22-48 (198)
470 PRK14530 adenylate kinase; Pro 93.6 0.059 1.3E-06 54.3 3.4 24 178-201 4-27 (215)
471 KOG0739 AAA+-type ATPase [Post 93.6 0.3 6.6E-06 49.4 8.1 90 156-269 133-235 (439)
472 PF03205 MobB: Molybdopterin g 93.6 0.067 1.5E-06 49.5 3.5 39 178-218 1-39 (140)
473 COG0467 RAD55 RecA-superfamily 93.6 0.089 1.9E-06 54.8 4.8 42 175-219 21-62 (260)
474 smart00072 GuKc Guanylate kina 93.5 0.18 3.8E-06 49.4 6.6 25 177-201 2-26 (184)
475 PRK05917 DNA polymerase III su 93.5 1.1 2.4E-05 46.7 12.5 37 165-201 6-43 (290)
476 COG4133 CcmA ABC-type transpor 93.5 0.26 5.6E-06 46.8 7.1 25 177-201 28-52 (209)
477 COG5238 RNA1 Ran GTPase-activa 93.5 0.026 5.7E-07 56.1 0.7 87 559-645 27-132 (388)
478 PRK07721 fliI flagellum-specif 93.5 0.36 7.9E-06 53.7 9.7 91 175-269 156-258 (438)
479 KOG0727 26S proteasome regulat 93.5 0.1 2.3E-06 51.2 4.7 45 157-201 156-213 (408)
480 TIGR01041 ATP_syn_B_arch ATP s 93.5 0.25 5.5E-06 54.9 8.4 94 175-269 139-248 (458)
481 PRK12339 2-phosphoglycerate ki 93.5 0.07 1.5E-06 52.5 3.7 25 177-201 3-27 (197)
482 TIGR00073 hypB hydrogenase acc 93.5 0.084 1.8E-06 52.8 4.3 32 170-201 15-46 (207)
483 PF03266 NTPase_1: NTPase; In 93.5 0.063 1.4E-06 51.4 3.2 22 180-201 2-23 (168)
484 TIGR03263 guanyl_kin guanylate 93.4 0.062 1.3E-06 52.5 3.1 24 178-201 2-25 (180)
485 PRK07196 fliI flagellum-specif 93.3 0.29 6.2E-06 54.0 8.4 90 175-269 153-255 (434)
486 COG2019 AdkA Archaeal adenylat 93.3 0.068 1.5E-06 49.4 3.0 47 177-236 4-50 (189)
487 TIGR01351 adk adenylate kinase 93.3 0.1 2.2E-06 52.4 4.6 22 180-201 2-23 (210)
488 PRK06936 type III secretion sy 93.3 0.29 6.4E-06 53.9 8.4 90 175-269 160-262 (439)
489 PRK07594 type III secretion sy 93.3 0.26 5.7E-06 54.3 8.1 90 175-269 153-255 (433)
490 COG0714 MoxR-like ATPases [Gen 93.3 0.19 4.1E-06 54.4 7.0 64 156-227 24-87 (329)
491 cd00464 SK Shikimate kinase (S 93.3 0.068 1.5E-06 50.6 3.2 22 180-201 2-23 (154)
492 PRK13657 cyclic beta-1,2-gluca 93.3 0.19 4.1E-06 59.4 7.5 27 175-201 359-385 (588)
493 CHL00059 atpA ATP synthase CF1 93.3 0.19 4.2E-06 55.7 6.9 90 175-269 139-243 (485)
494 COG0003 ArsA Predicted ATPase 93.3 0.14 2.9E-06 54.3 5.5 49 177-228 2-50 (322)
495 TIGR03496 FliI_clade1 flagella 93.2 0.32 6.9E-06 53.6 8.6 90 175-269 135-237 (411)
496 KOG4252 GTP-binding protein [S 93.2 0.13 2.9E-06 47.5 4.6 35 179-215 22-56 (246)
497 COG2401 ABC-type ATPase fused 93.2 0.099 2.1E-06 55.4 4.3 149 158-309 373-579 (593)
498 PF06414 Zeta_toxin: Zeta toxi 93.2 0.14 3.1E-06 50.8 5.4 91 175-270 13-103 (199)
499 cd00820 PEPCK_HprK Phosphoenol 93.2 0.079 1.7E-06 45.9 3.1 23 176-198 14-36 (107)
500 PRK05342 clpX ATP-dependent pr 93.1 0.12 2.5E-06 57.2 5.1 47 155-201 70-132 (412)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-99 Score=885.44 Aligned_cols=842 Identities=42% Similarity=0.717 Sum_probs=707.9
Q ss_pred hhhhHHHhhhccchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002700 16 FNRCLDCFLGKAAYIRNLQENVVALKTELVKLIEAKNDVMARVVNAERQPMMTRLNKVHGWLSRVDAVTAEADELTRHGS 95 (890)
Q Consensus 16 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~~Wl~~~~~~~~~~~d~~d~~~ 95 (890)
++++.+++.+++..+.+.++++..+++++..|+.+++|++++- .....+..|.+.+++++|+++|+++.|.
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~---------~~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKR---------DDLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhc---------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667888999999999999999999999999999999955432 2345688999999999999999999876
Q ss_pred hhh----------------hcccccCCCCCCccccchhHHHHHHHHHHHHHHHHcCCceeeec-ccCcccccccCCCCcc
Q 002700 96 QEI----------------EKLCLGGYCSKNCKSSYKFGKQVAKKLRDIETLMAEGAFEVVAQ-RASESVAEERPIEPTV 158 (890)
Q Consensus 96 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 158 (890)
.+. ++.|..++|++.....|.+++++.+++++++.+..++.|+.+.. ..+......+|..+..
T Consensus 80 v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (889)
T KOG4658|consen 80 VEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSES 159 (889)
T ss_pred HHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccc
Confidence 533 22344466667777888889999999999999987776766654 2233334445544444
Q ss_pred -cchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCc
Q 002700 159 -VGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLN 237 (890)
Q Consensus 159 -vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 237 (890)
||.+..++++++.|.+++..+|+|+||||+||||||+.++|+...++.+||.++||.||++++...++++|++.++...
T Consensus 160 ~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 160 DVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred cccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 9999999999999998888999999999999999999999998448999999999999999999999999999999866
Q ss_pred cccccccHHHHHHHHHHHhccCcEEEEEeccCCcccccccccCCCCCCCCCcEEEEecCChhHhhc-ccCCCcEeccCCC
Q 002700 238 DTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGL-MDAQKKFKVACLS 316 (890)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~-~~~~~~~~l~~L~ 316 (890)
..+...+.++.+..+.+.|++|||+|||||||+..+|+.++.++| ...+||+|++|||++.||.. +++...+++..|+
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p-~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~ 318 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFP-SRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLT 318 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCC-CccCCeEEEEEeccHhhhhccccCCccccccccC
Confidence 655666678999999999999999999999999999999999999 77889999999999999988 8888999999999
Q ss_pred hHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHhcc-ccccCCCccchh
Q 002700 317 DIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAMACKKTPEEWRYAIQVLRTS-SSQFAGLGNEVY 395 (890)
Q Consensus 317 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~~~i~ 395 (890)
++|||+||++.++.......+.++++|++|+++|+|+|||++++|+.|+.+++..+|+++.+.+.+. ..+.+++.+.++
T Consensus 319 ~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~ 398 (889)
T KOG4658|consen 319 PEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL 398 (889)
T ss_pred ccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence 9999999999999886566677999999999999999999999999999999999999999999888 555566678999
Q ss_pred hhhhhhcCCCCCcchhhHHhhhccCCCCceecHHHHHHHHHHcCCCCC-ccccchhhhHHHHHHHHHhhhcccccC----
Q 002700 396 PLLRFSYDNLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGFLTE-RDRFGEQNQGYHILGILLHVCLLEEGG---- 470 (890)
Q Consensus 396 ~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~a~g~i~~-~~~~~~~~~~~~~l~~L~~~~ll~~~~---- 470 (890)
.++.+||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+ ..+..+++.|+.|+++|++++|+....
T Consensus 399 ~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~ 477 (889)
T KOG4658|consen 399 PILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGR 477 (889)
T ss_pred HhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccc
Confidence 999999999995 99999999999999999999999999999999999 668889999999999999999998863
Q ss_pred cCeEEEehhHHHHHHHHHhhhccccccEEEEcCCccccCccccCcccccEEeeeccccccccCCCCCCCceEEEecccc-
Q 002700 471 DGEVKMHDVVRDMALWIACDIEKEKENFLVYAGVGLTEAPEVKGWANARRISLMDNQITNLSEIPTCPHLLTLFLNKNK- 549 (890)
Q Consensus 471 ~~~~~mHdlv~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~- 549 (890)
...|+|||+||++|.|++++++.+++++++..+.+....|....+..+|+++++++.+..++....+++|++|.+.+|.
T Consensus 478 ~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 478 KETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD 557 (889)
T ss_pred eeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch
Confidence 3789999999999999999999888888888777777788888999999999999999998888889999999999996
Q ss_pred -cccccchhhccCCcceEEEcCCC-CccccChhccCccCCCEEEccCCCCCccchhhhcCCCCcEEecCccccccccchh
Q 002700 550 -LQMIHNDFFQFMPSLKVLNLSHA-ELTELPVGIAQLVSLQHLDLSESDISELPEELKALVNLKCLNLEWTRYLITIPRQ 627 (890)
Q Consensus 550 -~~~~~~~~~~~l~~Lr~L~l~~~-~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 627 (890)
+..++..||..|+.|++|||++| .+.++|++|++|.|||||+++++.|+.+|.++++|++|.+||+..+..+..+| +
T Consensus 558 ~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~ 636 (889)
T KOG4658|consen 558 WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-G 636 (889)
T ss_pred hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-c
Confidence 78888999999999999999988 88899999999999999999999999999999999999999999998766665 4
Q ss_pred hhcCCcccccccccCccccccccccccchhhhhhHHhhcCCCCCceEEEEecChhhHHhhhccccccccceeeeecccCC
Q 002700 628 LVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVVEELLGLKYLEVISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKD 707 (890)
Q Consensus 628 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 707 (890)
+...|++|++|.+..... ..+...+.++.+|++|+.+.+...+...+..+.....+.+..+.+.+.++..
T Consensus 637 i~~~L~~Lr~L~l~~s~~----------~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~ 706 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSAL----------SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK 706 (889)
T ss_pred hhhhcccccEEEeecccc----------ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc
Confidence 466799999999975431 1236678889999999999987766644455544444444555555533221
Q ss_pred CCceeecccccccccceEeccccCCcceeEecCCCcccccc-CCCceEEEEecCCCCCCCCcccCCCCccEEeecccccc
Q 002700 708 TTFLEISALADLKQLNELRISECKKLEELKIDYPGVVQRFV-FHGLKKVDIVKCNKLKDLTFLAFAPNLKSIEVLGCVAM 786 (890)
Q Consensus 708 ~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~-~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l 786 (890)
....+++..+.+|+.|.|.+|...+. ...|........ |+++.++.+.+|.....+.|....|+|+.|.+..|..+
T Consensus 707 --~~~~~~~~~l~~L~~L~i~~~~~~e~-~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 707 --RTLISSLGSLGNLEELSILDCGISEI-VIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLL 783 (889)
T ss_pred --ceeecccccccCcceEEEEcCCCchh-hcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccc
Confidence 12225677889999999999987653 223333222223 77899999999999999999888999999999999999
Q ss_pred chhcccCcccccccccCCCCCCCcccEE-ecCCcccccccccCCCCCCCccEEeecCCCCCCCCCCCCCcc--cc-cceE
Q 002700 787 EEIVSVGKFAAVPEVTANLNPFAKLQNL-KFFGVINLKSIYWKPLPFPNLKSMSFLHCHKLKKLPLDSNSA--RE-RNIV 862 (890)
Q Consensus 787 ~~i~~~~~~~~l~~~~~~~~~~~~L~~L-~l~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~--~L-~~l~ 862 (890)
+++++...... ........|+++..+ .+.+.+.+.++.+.+..++.|+.+.+..||+++.+|...... .. ..+.
T Consensus 784 e~~i~~~k~~~--~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~ 861 (889)
T KOG4658|consen 784 EDIIPKLKALL--ELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLK 861 (889)
T ss_pred ccCCCHHHHhh--hcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceecccccee
Confidence 98866432111 111124457777777 688888888888888889999999999999999999876554 22 2333
Q ss_pred EEchhhhhccceecchhhhccc
Q 002700 863 IRGDRKWWEQLEWVDEATRNAF 884 (890)
Q Consensus 863 i~~~~~~~~~l~w~~~~~~~~~ 884 (890)
...+.+|-+.++|.+++++..+
T Consensus 862 ~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 862 EYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ecCCccceeeEEehhhhhhhhc
Confidence 3355567789999999988766
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-64 Score=626.86 Aligned_cols=638 Identities=22% Similarity=0.289 Sum_probs=444.0
Q ss_pred CcccchHHHHHHHHHHhh--cCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEe---CCc-----------
Q 002700 156 PTVVGLQLQLEQVWRCLE--EESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVV---SKD----------- 219 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~----------- 219 (890)
+.+|||++.++++..+|. .+++++|+||||||+||||||+++|+.. ..+|++.+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 568999999999999885 3578999999999999999999999987 578888887742 111
Q ss_pred cC-HHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCcccccccccCCCCCCCCCcEEEEecCCh
Q 002700 220 LR-LENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSE 298 (890)
Q Consensus 220 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IiiTtR~~ 298 (890)
+. ...++..++.++..... ..... ...++++++++|+||||||||+..+|+.+..... +.++||+||||||++
T Consensus 261 ~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~-~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ-WFGSGSRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc-cCCCCcEEEEEeCcH
Confidence 01 12344444444322111 01111 2457788999999999999999999998876555 678899999999999
Q ss_pred hHhhcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHH
Q 002700 299 EVCGLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAMACKKTPEEWRYAIQ 378 (890)
Q Consensus 299 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~ 378 (890)
.++..++..++|+++.|++++||+||+++||... .+++++.+++++|+++|+|+||||+++|++|++ ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9998877888999999999999999999999765 445678899999999999999999999999997 67899999999
Q ss_pred HHhccccccCCCccchhhhhhhhcCCCCCcchhhHHhhhccCCCCceecHHHHHHHHHHcCCCCCccccchhhhHHHHHH
Q 002700 379 VLRTSSSQFAGLGNEVYPLLRFSYDNLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQGYHILG 458 (890)
Q Consensus 379 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~l~ 458 (890)
.++... ..++..+|++||++|+++..|.||+++|+|+.+..++ .+..|.+.+.... ...++
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~ 473 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLK 473 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChH
Confidence 987643 2479999999999998746899999999999887554 3677777765432 22388
Q ss_pred HHHhhhcccccCcCeEEEehhHHHHHHHHHhhhcc--ccccEEEEcCCccccC--------------------------c
Q 002700 459 ILLHVCLLEEGGDGEVKMHDVVRDMALWIACDIEK--EKENFLVYAGVGLTEA--------------------------P 510 (890)
Q Consensus 459 ~L~~~~ll~~~~~~~~~mHdlv~~~a~~i~~~~~~--~~~~~~~~~~~~~~~~--------------------------~ 510 (890)
.|+++||++.. .+.+.|||++|+||++++++.+. .+..+++......... .
T Consensus 474 ~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 474 NLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred HHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 99999999875 46899999999999999876532 2233443321100000 1
Q ss_pred cccCcccccEEeeeccccc-------ccc-CCCCC-CCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhc
Q 002700 511 EVKGWANARRISLMDNQIT-------NLS-EIPTC-PHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGI 581 (890)
Q Consensus 511 ~~~~~~~~~~l~l~~~~~~-------~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i 581 (890)
.+.++.+++.|.+..+... .+| .+..+ ++|+.|.+.++.+..+|..+ .+.+|++|+++++.++.+|.++
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCcccccccccc
Confidence 1233445555555433211 111 12222 35777777777777776653 4678888888888888888888
Q ss_pred cCccCCCEEEccCC-CCCccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccCccccccccccccchhhhh
Q 002700 582 AQLVSLQHLDLSES-DISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGEL 660 (890)
Q Consensus 582 ~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 660 (890)
..+++|++|+|+++ .++.+|. ++.+++|++|++++|..+..+|.. ++++++|++|++.+|.... .++.
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~--~Lp~------- 699 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLE--ILPT------- 699 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcC--ccCC-------
Confidence 88888888888876 5677774 777888888888888878888876 7888888888887765321 1111
Q ss_pred hHHhhcCCCCCceEEEEecChhhHHhhhccccccccceeeeecccCCCCceeec--------------------------
Q 002700 661 VVEELLGLKYLEVISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKDTTFLEIS-------------------------- 714 (890)
Q Consensus 661 ~~~~L~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~-------------------------- 714 (890)
-.++++|+.|.++.+. .+..++. ...+|+.|++.++.........
T Consensus 700 ----~i~l~sL~~L~Lsgc~--~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 700 ----GINLKSLYRLNLSGCS--RLKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred ----cCCCCCCCEEeCCCCC--Ccccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccc
Confidence 1146677777765432 2222221 2245666666554321111000
Q ss_pred --ccccccccceEeccccCCcceeEecCCCccccccCCCceEEEEecCCCCCCCCcccCCCCccEEeeccccccchhccc
Q 002700 715 --ALADLKQLNELRISECKKLEELKIDYPGVVQRFVFHGLKKVDIVKCNKLKDLTFLAFAPNLKSIEVLGCVAMEEIVSV 792 (890)
Q Consensus 715 --~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~ 792 (890)
....+++|+.|++++|+.+..++... ..+++|+.|+|.+|+.++.+|....+++|++|++++|..+..++..
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si------~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSI------QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhh------hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc
Confidence 00012456666666666555443322 2377888888888888888876667888888888888777655431
Q ss_pred C--------cccccccccCCCCCCCcccEEecCCcccccccccCCCCCCCccEEeecCCCCCCCCCCC
Q 002700 793 G--------KFAAVPEVTANLNPFAKLQNLKFFGVINLKSIYWKPLPFPNLKSMSFLHCHKLKKLPLD 852 (890)
Q Consensus 793 ~--------~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~ 852 (890)
. ..+.+.++|..+..+++|+.|++.+|+++..++.....+++|+.+++++|++|+.++..
T Consensus 845 ~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 845 STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 0 01223344445566777777777777777777666666777777777777777766553
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.9e-44 Score=384.45 Aligned_cols=281 Identities=34% Similarity=0.642 Sum_probs=230.5
Q ss_pred hHHHHHHHHHHhhc--CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCcc
Q 002700 161 LQLQLEQVWRCLEE--ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLND 238 (890)
Q Consensus 161 r~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 238 (890)
||+++++|.+.|.+ ++.++|+|+||||+||||||++++++. ..+.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 789999999999999999999999985 458899999999999999999999999999987754
Q ss_pred cc-ccccHHHHHHHHHHHhccCcEEEEEeccCCcccccccccCCCCCCCCCcEEEEecCChhHhhcccC-CCcEeccCCC
Q 002700 239 TW-KNRRIEQKAQDIFRILKEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGLMDA-QKKFKVACLS 316 (890)
Q Consensus 239 ~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~~~~-~~~~~l~~L~ 316 (890)
.. ...+..+....+.+.++++++||||||||+...|+.+...++ ....|++||||||+..++..+.. ...|++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~-~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLP-SFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------H-CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 33 456778899999999999999999999999999999888877 66779999999999999876654 6789999999
Q ss_pred hHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHhccccccCCCccchhh
Q 002700 317 DIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAMACKKTPEEWRYAIQVLRTSSSQFAGLGNEVYP 396 (890)
Q Consensus 317 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~ 396 (890)
++||++||.+.++.......+.+.+.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.+.....+..+....+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999986552233455678999999999999999999999976567789999998887765443334468999
Q ss_pred hhhhhcCCCCCcchhhHHhhhccCCCCceecHHHHHHHHHHcCCCCCc
Q 002700 397 LLRFSYDNLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGFLTER 444 (890)
Q Consensus 397 ~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~a~g~i~~~ 444 (890)
++.+||+.||+ ++|.||+|||+||+++.|+++.++++|+++|||+..
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999 899999999999999999999999999999999763
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=2.5e-20 Score=232.42 Aligned_cols=331 Identities=21% Similarity=0.367 Sum_probs=223.6
Q ss_pred ccccEEeeeccccccccCCCCCCCceEEEecccccccccchhhccCCcceEEEcCCC-CccccChhccCccCCCEEEccC
Q 002700 516 ANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHA-ELTELPVGIAQLVSLQHLDLSE 594 (890)
Q Consensus 516 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~l~~lp~~i~~l~~L~~L~L~~ 594 (890)
.++|.|.+.++.+..+|......+|+.|++.++.+..++.. +..+++|++|+++++ .+..+| .++.+++|++|++++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 46899999999888888777789999999999988777655 578999999999987 577888 588999999999999
Q ss_pred C-CCCccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccCcccccccc-cccc---chhhhhhHHhhc---
Q 002700 595 S-DISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDE-ASED---SVLGELVVEELL--- 666 (890)
Q Consensus 595 ~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~---~~~~~~~~~~L~--- 666 (890)
| .+..+|..++++.+|+.|++++|..+..+|.+ + ++++|++|++.+|+...... .... -.+....+.++.
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc
Confidence 7 68899999999999999999999989999985 3 89999999999886421110 0000 000011111111
Q ss_pred CCCCCceEEEEecChhhH----Hhhh-ccccccccceeeeecccCCCCceeecccccccccceEeccccCCcceeEecCC
Q 002700 667 GLKYLEVISFNLRSSRAL----QSFL-SSHKLRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKIDYP 741 (890)
Q Consensus 667 ~L~~L~~L~i~~~~~~~~----~~l~-~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 741 (890)
.+++|+.|.+.......+ ..+. .......+|+.|+++++.....++ .++..+++|+.|++++|..++.++...
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-hhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence 234444444322110000 0000 001123568888888876655554 457778889999999888887664332
Q ss_pred CccccccCCCceEEEEecCCCCCCCCc---------------------ccCCCCccEEeeccccccchhcccCccccccc
Q 002700 742 GVVQRFVFHGLKKVDIVKCNKLKDLTF---------------------LAFAPNLKSIEVLGCVAMEEIVSVGKFAAVPE 800 (890)
Q Consensus 742 ~~~~~~~~~~L~~L~L~~c~~l~~l~~---------------------l~~l~~L~~L~l~~c~~l~~i~~~~~~~~l~~ 800 (890)
.+++|+.|++++|..+..+|. +..+++|++|++.+|+.++.++
T Consensus 823 ------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~---------- 886 (1153)
T PLN03210 823 ------NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS---------- 886 (1153)
T ss_pred ------CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC----------
Confidence 266777777777766655442 3456677777777777666543
Q ss_pred ccCCCCCCCcccEEecCCcccccccccCC-------------CCCCCccEEeecCCCCCCCCCCCCCcccccceEEEch-
Q 002700 801 VTANLNPFAKLQNLKFFGVINLKSIYWKP-------------LPFPNLKSMSFLHCHKLKKLPLDSNSARERNIVIRGD- 866 (890)
Q Consensus 801 ~~~~~~~~~~L~~L~l~~~~~L~~l~~~~-------------~~~~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~i~~~- 866 (890)
.....+++|+.|.+.+|++|..++... ..+|....+.+.+|.+|..-+...+......+.+.|.
T Consensus 887 --~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~e 964 (1153)
T PLN03210 887 --LNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEE 964 (1153)
T ss_pred --cccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhcccccceEEECCCcc
Confidence 356678999999999999998765422 1245556778899988876554322223334444443
Q ss_pred -hhhh
Q 002700 867 -RKWW 870 (890)
Q Consensus 867 -~~~~ 870 (890)
|+|+
T Consensus 965 vp~~f 969 (1153)
T PLN03210 965 VPSYF 969 (1153)
T ss_pred Cchhc
Confidence 5554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=2.9e-20 Score=232.23 Aligned_cols=332 Identities=17% Similarity=0.160 Sum_probs=216.6
Q ss_pred CcccccEEeeeccccccccCCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCcc-ccChhccCccCCCEEEc
Q 002700 514 GWANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELT-ELPVGIAQLVSLQHLDL 592 (890)
Q Consensus 514 ~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~l~~L~~L~L 592 (890)
.+.++++|++.+|.+........+++|++|++++|.+....+..+..+++|++|++++|.+. .+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 45678888888777765433456778888888888776555555778888888888888765 67878888888888888
Q ss_pred cCCCCC-ccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccCccccccccccccchhhhhhHHhhcCCCCC
Q 002700 593 SESDIS-ELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVVEELLGLKYL 671 (890)
Q Consensus 593 ~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 671 (890)
++|.+. .+|..++++.+|++|++++|.....+|.. ++++++|++|++.++... ......+.++++|
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~------------~~~p~~l~~l~~L 262 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLT------------GPIPSSLGNLKNL 262 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceec------------cccChhHhCCCCC
Confidence 888765 57888888888888888888755566765 778888888888765421 1223456677778
Q ss_pred ceEEEEecChhhHHhhhccccccccceeeeecccCCCCceeecccccccccceEeccccCCcceeEecCCCccccccCCC
Q 002700 672 EVISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKIDYPGVVQRFVFHG 751 (890)
Q Consensus 672 ~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 751 (890)
+.|.+..+.... .++.....+.+|+.|+++++......+ ..+..+++|+.|+++++.....++..+ ..+++
T Consensus 263 ~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~------~~l~~ 333 (968)
T PLN00113 263 QYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVAL------TSLPR 333 (968)
T ss_pred CEEECcCCeeec--cCchhHhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcCChhH------hcCCC
Confidence 877776443211 112222234577888887765433322 345667788888888765443322111 23778
Q ss_pred ceEEEEecCCCCCCCC-cccCCCCccEEeeccccccchhccc-Cccccc-----------ccccCCCCCCCcccEEecCC
Q 002700 752 LKKVDIVKCNKLKDLT-FLAFAPNLKSIEVLGCVAMEEIVSV-GKFAAV-----------PEVTANLNPFAKLQNLKFFG 818 (890)
Q Consensus 752 L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~-~~~~~l-----------~~~~~~~~~~~~L~~L~l~~ 818 (890)
|+.|++.+|.....+| .++.+++|+.|++++|.....++.. .....+ ...+..+..+++|+.|.+.+
T Consensus 334 L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413 (968)
T ss_pred CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence 8888888876555555 4677888888888876533222210 000000 12233456678888888888
Q ss_pred cccccccccCCCCCCCccEEeecCCCCCCCCCCCCCcc-cccceEEEchh
Q 002700 819 VINLKSIYWKPLPFPNLKSMSFLHCHKLKKLPLDSNSA-RERNIVIRGDR 867 (890)
Q Consensus 819 ~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~-~L~~l~i~~~~ 867 (890)
+.-...++.....+++|+.|++++|.--..+|...... +|+.+++.+|.
T Consensus 414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred CEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 76555566555668889999998885444455443333 78888888774
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=1.2e-19 Score=226.76 Aligned_cols=330 Identities=19% Similarity=0.165 Sum_probs=158.6
Q ss_pred CcccccEEeeecccccc-cc-CCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCcc-ccChhccCccCCCEE
Q 002700 514 GWANARRISLMDNQITN-LS-EIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELT-ELPVGIAQLVSLQHL 590 (890)
Q Consensus 514 ~~~~~~~l~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~l~~L~~L 590 (890)
.+.+++.|++.+|.+.. +| .+.++++|++|++++|.+....+..+.++++|++|++++|.+. .+|..++++.+|++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 34455566665555432 22 2445555666666555544433344555566666666655554 455555566666666
Q ss_pred EccCCCCC-ccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccCccccccccccccchhhhhhHHhhcCCC
Q 002700 591 DLSESDIS-ELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVVEELLGLK 669 (890)
Q Consensus 591 ~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 669 (890)
++++|.+. .+|..++++++|++|++++|.....+|.. +.++++|++|++.++... ......+.+++
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~------------~~~p~~~~~l~ 308 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLS------------GEIPELVIQLQ 308 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeec------------cCCChhHcCCC
Confidence 66655544 45555556666666666555533344443 455555665555544311 11122344555
Q ss_pred CCceEEEEecChhhHHhhhccccccccceeeeecccCCCCceeecccccccccceEeccccCCcceeEecCCCccccccC
Q 002700 670 YLEVISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKIDYPGVVQRFVF 749 (890)
Q Consensus 670 ~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 749 (890)
+|+.|++..+.... ..+.....+++|+.|+++++......+ ..+..+++|+.|+++++.....+ +.+.. .+
T Consensus 309 ~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~-p~~~~-----~~ 379 (968)
T PLN00113 309 NLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEI-PEGLC-----SS 379 (968)
T ss_pred CCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeC-ChhHh-----Cc
Confidence 56666554332211 111112223456666666554332222 23445566666666655332211 11111 13
Q ss_pred CCceEEEEecCCCCCCCC-cccCCCCccEEeeccccccchhccc-Cccccc-----------ccccCCCCCCCcccEEec
Q 002700 750 HGLKKVDIVKCNKLKDLT-FLAFAPNLKSIEVLGCVAMEEIVSV-GKFAAV-----------PEVTANLNPFAKLQNLKF 816 (890)
Q Consensus 750 ~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~-~~~~~l-----------~~~~~~~~~~~~L~~L~l 816 (890)
++|+.|++.+|+....+| .+..+++|+.|++++|.....++.. ..+..+ ...+.....+++|+.|++
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 445555555544333333 2444555555555554322111110 000000 011112345677777777
Q ss_pred CCcccccccccCCCCCCCccEEeecCCCCCCCCCCCCCcc-cccceEEEch
Q 002700 817 FGVINLKSIYWKPLPFPNLKSMSFLHCHKLKKLPLDSNSA-RERNIVIRGD 866 (890)
Q Consensus 817 ~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~-~L~~l~i~~~ 866 (890)
.+|.-...++... ..++|+.|++++|.--..+|...... +|+.+++++|
T Consensus 460 ~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 460 ARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred cCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 7765554444322 24677777777775444555444333 6777777766
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.6e-21 Score=206.36 Aligned_cols=341 Identities=23% Similarity=0.310 Sum_probs=242.7
Q ss_pred cEEEEcCCccccCc-cccCcccccEEeeeccccccc-cCCCCCCCceEEEecccccc--cccchhhccCCcceEEEcCCC
Q 002700 497 NFLVYAGVGLTEAP-EVKGWANARRISLMDNQITNL-SEIPTCPHLLTLFLNKNKLQ--MIHNDFFQFMPSLKVLNLSHA 572 (890)
Q Consensus 497 ~~~~~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~l~~~ 572 (890)
.|+.....++..+| ....+.++.||++.+|++..+ -+++.++.||++.+..|+++ .+|+++| .+..|.+||||+|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchh
Confidence 45555555544443 345677899999999988765 45788999999999999854 5777755 6899999999999
Q ss_pred CccccChhccCccCCCEEEccCCCCCccchh-hhcCCCCcEEecCccccccccchhhhcCCcccccccccCccccccccc
Q 002700 573 ELTELPVGIAQLVSLQHLDLSESDISELPEE-LKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEA 651 (890)
Q Consensus 573 ~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 651 (890)
.+.+.|..+..-+++-+|+|++|+|.++|.. +-+|+-|-.|||++|. +..+|+. +..|..|++|.+++...+
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~----- 186 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLN----- 186 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhh-----
Confidence 9999999999999999999999999999987 5689999999999987 8999998 899999999999865422
Q ss_pred cccchhhhhhHHhhcCCCCCceEEEEecChhhHHhhhccccccccceeeeecccCCCCceeecccccccccceEeccccC
Q 002700 652 SEDSVLGELVVEELLGLKYLEVISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECK 731 (890)
Q Consensus 652 ~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 731 (890)
...+..|.+++.|+.|.++... ..+..++.+...+.+|..++++.++-. .++ ..+-++++|+.|++|++.
T Consensus 187 -------hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP-ecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 187 -------HFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENNLP-IVP-ECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred -------HHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccCCC-cch-HHHhhhhhhheeccCcCc
Confidence 3345566777777777776543 334556666666778888888875432 222 355677899999999864
Q ss_pred CcceeEecCCCccccccCCCceEEEEecCCCCCCCCc-ccCCCCccEEeecccc-ccchhccc-C----------ccccc
Q 002700 732 KLEELKIDYPGVVQRFVFHGLKKVDIVKCNKLKDLTF-LAFAPNLKSIEVLGCV-AMEEIVSV-G----------KFAAV 798 (890)
Q Consensus 732 ~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~l~~c~-~l~~i~~~-~----------~~~~l 798 (890)
++.+.... ....+|+.|+++.. .++.+|. +..+++|+.|.+.+.. ..+.|++. + ..+.+
T Consensus 257 -iteL~~~~------~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 257 -ITELNMTE------GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred -eeeeeccH------HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 44443321 12467888888874 5777774 6778888888776543 12223221 1 11223
Q ss_pred ccccCCCCCCCcccEEecCCcccccccccCCCCCCCccEEeecCCCCCCCCCCCCCcc-cccceEEE
Q 002700 799 PEVTANLNPFAKLQNLKFFGVINLKSIYWKPLPFPNLKSMSFLHCHKLKKLPLDSNSA-RERNIVIR 864 (890)
Q Consensus 799 ~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~-~L~~l~i~ 864 (890)
+-+|..+..+++|+.|.|.. ..|-.+|...--+|.|+.|+++..|+|..-|...... +++.-+|+
T Consensus 329 ElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 329 ELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 34455677788888888864 5666777666667888888888888888777554432 44444443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=1.7e-19 Score=191.20 Aligned_cols=290 Identities=20% Similarity=0.214 Sum_probs=176.4
Q ss_pred ccccCcccccEEeeeccccccccC-CCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCC
Q 002700 510 PEVKGWANARRISLMDNQITNLSE-IPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQ 588 (890)
Q Consensus 510 ~~~~~~~~~~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~ 588 (890)
+....+..+..|+++.|++.+.|. +...+++-+|++++|++..+|...|-++..|-+||||+|.++.+|+.+..|.+|+
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 344455666677777777666653 3445666677777777777777667777777777777777777777777777777
Q ss_pred EEEccCCCCC-----ccchhhhcCCCCcEEecCcccc-ccccchhhhcCCcccccccccCccccccccccccchhhhhhH
Q 002700 589 HLDLSESDIS-----ELPEELKALVNLKCLNLEWTRY-LITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVV 662 (890)
Q Consensus 589 ~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~-l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 662 (890)
+|+|++|.+. .|| .++.|++|.+++++. +..+|.. +..|.+|+.++++..+. ...+
T Consensus 177 tL~Ls~NPL~hfQLrQLP----smtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~L-------------p~vP 238 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLP----SMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNL-------------PIVP 238 (1255)
T ss_pred hhhcCCChhhHHHHhcCc----cchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCC-------------Ccch
Confidence 7777776543 333 356666666666643 3456664 66666776666654321 1123
Q ss_pred HhhcCCCCCceEEEEecChhhHHhhhccccccccceeeeecccCCCCceeecccccccccceEeccccCCcceeEecCCC
Q 002700 663 EELLGLKYLEVISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKIDYPG 742 (890)
Q Consensus 663 ~~L~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 742 (890)
+-+-++.+|+.|+++.+.... +........+++.|+++.+.-. .++ ..+..++.|+.|.+.++. +. .....
T Consensus 239 ecly~l~~LrrLNLS~N~ite---L~~~~~~W~~lEtLNlSrNQLt-~LP-~avcKL~kL~kLy~n~Nk-L~---FeGiP 309 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITE---LNMTEGEWENLETLNLSRNQLT-VLP-DAVCKLTKLTKLYANNNK-LT---FEGIP 309 (1255)
T ss_pred HHHhhhhhhheeccCcCceee---eeccHHHHhhhhhhccccchhc-cch-HHHhhhHHHHHHHhccCc-cc---ccCCc
Confidence 345566666666665443322 1112222345667777665432 222 356667778777775532 21 11110
Q ss_pred ccccccCCCceEEEEecCCCCCCCC-cccCCCCccEEeeccccccchhcccCcccccccccCCCCCCCcccEEecCCccc
Q 002700 743 VVQRFVFHGLKKVDIVKCNKLKDLT-FLAFAPNLKSIEVLGCVAMEEIVSVGKFAAVPEVTANLNPFAKLQNLKFFGVIN 821 (890)
Q Consensus 743 ~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 821 (890)
.+.+.+.+|+.+...+. +++-.| .+..++.|+.|.|+....+ .+|..+.-+|.|+.|++.+.|+
T Consensus 310 -SGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi-------------TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 310 -SGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI-------------TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred -cchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee-------------echhhhhhcCCcceeeccCCcC
Confidence 12234667777777764 566666 4778899999998764432 2344777899999999999999
Q ss_pred ccccccCCCCCCCccEEeec
Q 002700 822 LKSIYWKPLPFPNLKSMSFL 841 (890)
Q Consensus 822 L~~l~~~~~~~~~L~~L~i~ 841 (890)
|-.-|....+-.+|+.-+|.
T Consensus 375 LVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 375 LVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ccCCCCcchhhhcceeeecc
Confidence 98766654444566655543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=7.7e-18 Score=177.97 Aligned_cols=315 Identities=20% Similarity=0.262 Sum_probs=181.6
Q ss_pred cccEEeeecccccccc--CCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCcccc-ChhccCccCCCEEEcc
Q 002700 517 NARRISLMDNQITNLS--EIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTEL-PVGIAQLVSLQHLDLS 593 (890)
Q Consensus 517 ~~~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~l~~L~~L~L~ 593 (890)
++..|++.+|.+..+. ++.-++.||+|+++.|.+..++...|..-.++++|+|++|.|+.+ -..|..+.+|.+|.|+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 4666666666666543 245566667777776666666665566656677777777766655 3345566667777777
Q ss_pred CCCCCccchh-hhcCCCCcEEecCccccccccchhhhcCCcccccccccCccccccccccccchhhhhhHHhhcCCCCCc
Q 002700 594 ESDISELPEE-LKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVVEELLGLKYLE 672 (890)
Q Consensus 594 ~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 672 (890)
.|+|+.+|.. +.+|++|+.|+|..|. ++.+.--.+.+|.+|+.|.+......... -+.+-.|.+++
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~------------DG~Fy~l~kme 272 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLD------------DGAFYGLEKME 272 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCccccc------------Ccceeeecccc
Confidence 7777777653 4447777777776665 34332222566666666666533221111 11233455666
Q ss_pred eEEEEecChhhHHhhhccccccccceeeeecccCCCCceeecccccccccceEeccccCCcceeEecCCCccccccCCCc
Q 002700 673 VISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKIDYPGVVQRFVFHGL 752 (890)
Q Consensus 673 ~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 752 (890)
.|++..+......+ ...-.++.|+.|+++++.. ......+....++|+.|+++++ .++.+++... ..++.|
T Consensus 273 ~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~NaI-~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf-----~~L~~L 343 (873)
T KOG4194|consen 273 HLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNAI-QRIHIDSWSFTQKLKELDLSSN-RITRLDEGSF-----RVLSQL 343 (873)
T ss_pred eeecccchhhhhhc--ccccccchhhhhccchhhh-heeecchhhhcccceeEecccc-ccccCChhHH-----HHHHHh
Confidence 66665544333221 1222345667777766543 2233345555677777777754 3443433222 236777
Q ss_pred eEEEEecCCCCCCCC--cccCCCCccEEeeccccccchhcccCcccccccccCCCCCCCcccEEecCCccccccccc-CC
Q 002700 753 KKVDIVKCNKLKDLT--FLAFAPNLKSIEVLGCVAMEEIVSVGKFAAVPEVTANLNPFAKLQNLKFFGVINLKSIYW-KP 829 (890)
Q Consensus 753 ~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~-~~ 829 (890)
+.|.|+.. .++.+. .+..+.+|+.|+|++.. +.-.+. .-...+.++++|++|.+.+ .+++.++. ..
T Consensus 344 e~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~-ls~~IE--------Daa~~f~gl~~LrkL~l~g-Nqlk~I~krAf 412 (873)
T KOG4194|consen 344 EELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIE--------DAAVAFNGLPSLRKLRLTG-NQLKSIPKRAF 412 (873)
T ss_pred hhhccccc-chHHHHhhHHHHhhhhhhhcCcCCe-EEEEEe--------cchhhhccchhhhheeecC-ceeeecchhhh
Confidence 77777764 444443 24567788888887643 222211 1112567799999999998 67888886 34
Q ss_pred CCCCCccEEeecCCCCCCCCCCCCCcccccceEEE
Q 002700 830 LPFPNLKSMSFLHCHKLKKLPLDSNSARERNIVIR 864 (890)
Q Consensus 830 ~~~~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~i~ 864 (890)
..+++||+|++.+.+--.--|-......|+++.+.
T Consensus 413 sgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 413 SGLEALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred ccCcccceecCCCCcceeecccccccchhhhhhhc
Confidence 45899999999877433322322233356666554
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.65 E-value=4.4e-17 Score=172.34 Aligned_cols=315 Identities=18% Similarity=0.293 Sum_probs=220.4
Q ss_pred cCcccccEEeeeccccccccCCCCC-CCceEEEecccccccccchhhccCCcceEEEcCCCCccccCh-hccCccCCCEE
Q 002700 513 KGWANARRISLMDNQITNLSEIPTC-PHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPV-GIAQLVSLQHL 590 (890)
Q Consensus 513 ~~~~~~~~l~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~l~~L~~L 590 (890)
.++.+++.+++..|.++.+|.++.. .+|..|++.+|.+..+....++.++.||+||||.|.|+++|. ++..=.++++|
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 4556888888888888888877665 458999999998888887778888999999999999888764 35555789999
Q ss_pred EccCCCCCccch-hhhcCCCCcEEecCccccccccchhhhcCCcccccccccCccccccccccccchhhhhhHHhhcCCC
Q 002700 591 DLSESDISELPE-ELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVVEELLGLK 669 (890)
Q Consensus 591 ~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 669 (890)
+|++|.|+.+-. .+..|.+|.+|.|+.|. +..+|..++.+|++|+.|++......... ...+.+|+
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive------------~ltFqgL~ 245 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVE------------GLTFQGLP 245 (873)
T ss_pred eeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeeh------------hhhhcCch
Confidence 999999987754 47788899999999887 78899887888999999988643322111 12244555
Q ss_pred CCceEEEEecChhhHHhhhccccccccceeeeecccCCCCceeecccccccccceEeccccCCcceeEe-cCCCcccccc
Q 002700 670 YLEVISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKI-DYPGVVQRFV 748 (890)
Q Consensus 670 ~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~ 748 (890)
.|+.|.+.-++...++. ...-.+..++.|++..+.-. .+.-.++-.+..|+.|+++.+ .++.+.+ .|. .
T Consensus 246 Sl~nlklqrN~I~kL~D--G~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~Ws------f 315 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDD--GAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWS------F 315 (873)
T ss_pred hhhhhhhhhcCcccccC--cceeeecccceeecccchhh-hhhcccccccchhhhhccchh-hhheeecchhh------h
Confidence 55555555444333221 11122457788888775432 222245667889999999865 4444433 453 2
Q ss_pred CCCceEEEEecCCCCCCCCc--ccCCCCccEEeeccccccchhcccCcccccccccCCCCCCCcccEEecCCcccccccc
Q 002700 749 FHGLKKVDIVKCNKLKDLTF--LAFAPNLKSIEVLGCVAMEEIVSVGKFAAVPEVTANLNPFAKLQNLKFFGVINLKSIY 826 (890)
Q Consensus 749 ~~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~ 826 (890)
.++|+.|+|++. .++.++. +..|..|++|+|++. .+..+.. ..+..+.+|++|+|.+.. + +|+
T Consensus 316 tqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e-----------~af~~lssL~~LdLr~N~-l-s~~ 380 (873)
T KOG4194|consen 316 TQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAE-----------GAFVGLSSLHKLDLRSNE-L-SWC 380 (873)
T ss_pred cccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHh-----------hHHHHhhhhhhhcCcCCe-E-EEE
Confidence 689999999985 5666664 667889999999984 3555433 145678899999998742 2 233
Q ss_pred cC-----CCCCCCccEEeecCCCCCCCCCCCCCc-c-cccceEEEch
Q 002700 827 WK-----PLPFPNLKSMSFLHCHKLKKLPLDSNS-A-RERNIVIRGD 866 (890)
Q Consensus 827 ~~-----~~~~~~L~~L~i~~C~~L~~lp~~~~~-~-~L~~l~i~~~ 866 (890)
.+ ...+|+|+.|.+.+. +|+.+|.-.-+ . +|+.+++.+.
T Consensus 381 IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 381 IEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred EecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence 22 223899999999886 88888864332 2 7888887765
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=2.9e-17 Score=166.32 Aligned_cols=324 Identities=22% Similarity=0.277 Sum_probs=198.6
Q ss_pred cCccccCcccccEEeeeccccccccCCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCC
Q 002700 508 EAPEVKGWANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSL 587 (890)
Q Consensus 508 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L 587 (890)
-++..+++.++..+.+..|++..+|+|+.|..|..|.+..|.+..+|....+.+.+|.+||+++|+++++|..++.|.+|
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL 277 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSL 277 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhh
Confidence 34667778889999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred CEEEccCCCCCccchhhhcCCCCcEEecCccccccccchhhhcCCc--ccccccccC-c-cccccccccc-cchhhhhhH
Q 002700 588 QHLDLSESDISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLS--RLHVLRMFG-A-SNNVLDEASE-DSVLGELVV 662 (890)
Q Consensus 588 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~--~L~~L~l~~-~-~~~~~~~~~~-~~~~~~~~~ 662 (890)
.+||+++|.|+.+|.+++++ +|+.|-+.||. +..+-.+++.+=+ =|++|+-.. | +.+...+... .........
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 99999999999999999999 99999999998 7777776554322 255554311 1 1000000000 000011122
Q ss_pred HhhcCCCCCceEEEEecChhhHH-hhhccccccccceeeeecccCCCCceeecccccccccceEeccccCCcceeEecCC
Q 002700 663 EELLGLKYLEVISFNLRSSRALQ-SFLSSHKLRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKIDYP 741 (890)
Q Consensus 663 ~~L~~L~~L~~L~i~~~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 741 (890)
.....+.+.+.|.++....+..+ ++..... ..-....+++.+.-.+.+ ..+..+..+.+.-+...+.+. |.
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~-~~~Vt~VnfskNqL~elP--k~L~~lkelvT~l~lsnn~is-----fv 427 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTLVPDEVFEAAK-SEIVTSVNFSKNQLCELP--KRLVELKELVTDLVLSNNKIS-----FV 427 (565)
T ss_pred cchhhhhhhhhhcccccccccCCHHHHHHhh-hcceEEEecccchHhhhh--hhhHHHHHHHHHHHhhcCccc-----cc
Confidence 22333344444444432221111 1111100 012334444433221111 112222222222222222222 21
Q ss_pred CccccccCCCceEEEEecCCCCCCCC-cccCCCCccEEeeccccccchhccc-----------CcccccccccC-CCCCC
Q 002700 742 GVVQRFVFHGLKKVDIVKCNKLKDLT-FLAFAPNLKSIEVLGCVAMEEIVSV-----------GKFAAVPEVTA-NLNPF 808 (890)
Q Consensus 742 ~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~-----------~~~~~l~~~~~-~~~~~ 808 (890)
+ .....+++|..|++++. .+.++| .++.+..|+.|+++... ...++.. .....+.+++. .+.++
T Consensus 428 ~-~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 428 P-LELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred h-HHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 1 11124777777777774 355566 46667777888777642 2222211 01112222222 36778
Q ss_pred CcccEEecCCcccccccccCCCCCCCccEEeecCCCC
Q 002700 809 AKLQNLKFFGVINLKSIYWKPLPFPNLKSMSFLHCHK 845 (890)
Q Consensus 809 ~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~C~~ 845 (890)
.+|..|++.+ ..+..+|...+.|.+|++|++++.|-
T Consensus 505 ~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 505 RNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 8888888877 56778888888888888888888754
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.42 E-value=1.5e-15 Score=154.03 Aligned_cols=263 Identities=23% Similarity=0.347 Sum_probs=163.3
Q ss_pred CceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCCEEEccCCCCCccchhhhcCCCCcEEecCcc
Q 002700 539 HLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPEELKALVNLKCLNLEWT 618 (890)
Q Consensus 539 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~ 618 (890)
.+..+.++.|.+..+.++ +.++..|.+|+++++.+..+|..|+.+..++.|+.+++++.++|+.++.+.+|.+|+++.+
T Consensus 46 ~l~~lils~N~l~~l~~d-l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRED-LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHh-hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 344555555555554444 4566677777777777777777777777777777777777777777777777777777766
Q ss_pred ccccccchhhhcCCcccccccccCccccccccccccchhhhhhHHhhcCCCCCceEEEEecChhhHHhhhccccccccce
Q 002700 619 RYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVVEELLGLKYLEVISFNLRSSRALQSFLSSHKLRSCIQ 698 (890)
Q Consensus 619 ~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~ 698 (890)
. +.++|++ ++.+..|..|+..... ....+ +...++ .++.
T Consensus 125 ~-~~el~~~-i~~~~~l~dl~~~~N~---i~slp----------~~~~~~--------------------------~~l~ 163 (565)
T KOG0472|consen 125 E-LKELPDS-IGRLLDLEDLDATNNQ---ISSLP----------EDMVNL--------------------------SKLS 163 (565)
T ss_pred c-eeecCch-HHHHhhhhhhhccccc---cccCc----------hHHHHH--------------------------HHHH
Confidence 5 5666665 6666666655543211 11110 111111 1122
Q ss_pred eeeecccCCCCceeecccccccccceEeccccCCcceeEecCCCccccccCCCceEEEEecCCCCCCCCcccCCCCccEE
Q 002700 699 ALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKIDYPGVVQRFVFHGLKKVDIVKCNKLKDLTFLAFAPNLKSI 778 (890)
Q Consensus 699 ~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L 778 (890)
.+.+.++...... ...-.++.|++|+... +.++.++++..+ +.+|..|++... ++..+|.++.+..|++|
T Consensus 164 ~l~~~~n~l~~l~--~~~i~m~~L~~ld~~~-N~L~tlP~~lg~------l~~L~~LyL~~N-ki~~lPef~gcs~L~El 233 (565)
T KOG0472|consen 164 KLDLEGNKLKALP--ENHIAMKRLKHLDCNS-NLLETLPPELGG------LESLELLYLRRN-KIRFLPEFPGCSLLKEL 233 (565)
T ss_pred HhhccccchhhCC--HHHHHHHHHHhcccch-hhhhcCChhhcc------hhhhHHHHhhhc-ccccCCCCCccHHHHHH
Confidence 2222222111111 1122256677776532 345555555433 667777777764 67778888888888888
Q ss_pred eeccccccchhcccCcccccccccCCCCCCCcccEEecCCcccccccccCCCCCCCccEEeecCCCCCCCCCCCCCcccc
Q 002700 779 EVLGCVAMEEIVSVGKFAAVPEVTANLNPFAKLQNLKFFGVINLKSIYWKPLPFPNLKSMSFLHCHKLKKLPLDSNSARE 858 (890)
Q Consensus 779 ~l~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~L 858 (890)
++... .++-++. ....++++|..|++.+ .++++.|.+..-+.+|+.|++++. .+..+|....+..|
T Consensus 234 h~g~N-~i~~lpa-----------e~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlhL 299 (565)
T KOG0472|consen 234 HVGEN-QIEMLPA-----------EHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNLHL 299 (565)
T ss_pred Hhccc-HHHhhHH-----------HHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-ccccCCccccccee
Confidence 88763 3443333 1345788889999988 578888888877888999999886 78888888777788
Q ss_pred cceEEEchh
Q 002700 859 RNIVIRGDR 867 (890)
Q Consensus 859 ~~l~i~~~~ 867 (890)
+.+.+.|.|
T Consensus 300 ~~L~leGNP 308 (565)
T KOG0472|consen 300 KFLALEGNP 308 (565)
T ss_pred eehhhcCCc
Confidence 888888876
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=3.7e-12 Score=147.72 Aligned_cols=129 Identities=26% Similarity=0.289 Sum_probs=92.3
Q ss_pred cEEEEcCCccccCccccCcccccEEeeeccccccccCCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccc
Q 002700 497 NFLVYAGVGLTEAPEVKGWANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTE 576 (890)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~ 576 (890)
..+......+..+|.. -..+++.|.+.+|.+..+|.. .++|++|++++|.+..+|.. .++|+.|++++|.++.
T Consensus 204 ~~LdLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 204 AVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTH 276 (788)
T ss_pred cEEEcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCCchhh
Confidence 3444445455555542 234788899999888887753 57899999999988877642 4688899999998888
Q ss_pred cChhccCccCCCEEEccCCCCCccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccCc
Q 002700 577 LPVGIAQLVSLQHLDLSESDISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGA 643 (890)
Q Consensus 577 lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 643 (890)
+|... .+|+.|++++|+++.+|.. +++|+.|++++|. +..+|.. . .+|+.|.+.++
T Consensus 277 Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N 332 (788)
T PRK15387 277 LPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNN 332 (788)
T ss_pred hhhch---hhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccC
Confidence 87533 5688889999999888863 4678999998886 6777752 2 34666666544
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=1.1e-14 Score=162.82 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=28.4
Q ss_pred cCCCceEEEEecCCCCCCCCc--ccCCCCccEEeeccccccchhc
Q 002700 748 VFHGLKKVDIVKCNKLKDLTF--LAFAPNLKSIEVLGCVAMEEIV 790 (890)
Q Consensus 748 ~~~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~i~ 790 (890)
.+.+|+.|+|++. .+..+|. +..++.|++|+|+|. .++.++
T Consensus 381 ~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp 423 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLP 423 (1081)
T ss_pred cccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhh
Confidence 4777888888874 5666663 667788888888874 455554
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.40 E-value=3.2e-13 Score=160.03 Aligned_cols=325 Identities=21% Similarity=0.296 Sum_probs=197.5
Q ss_pred EEEcCCccccCccccCcccccEEeeeccc--cccccC--CCCCCCceEEEecccc-cccccchhhccCCcceEEEcCCCC
Q 002700 499 LVYAGVGLTEAPEVKGWANARRISLMDNQ--ITNLSE--IPTCPHLLTLFLNKNK-LQMIHNDFFQFMPSLKVLNLSHAE 573 (890)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~--~~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~Lr~L~l~~~~ 573 (890)
++.........+.....++++.|-+..|. +..++. +..++.|++|++++|. +..+|. .++.+-+||||+++++.
T Consensus 528 ~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 528 MSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTG 606 (889)
T ss_pred EEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCC
Confidence 34333333344444455579999998886 555554 6789999999999887 555554 48999999999999999
Q ss_pred ccccChhccCccCCCEEEccCC-CCCccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccCcccccccccc
Q 002700 574 LTELPVGIAQLVSLQHLDLSES-DISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEAS 652 (890)
Q Consensus 574 l~~lp~~i~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 652 (890)
++.+|.++++|..|.+||+..+ .+..+|.....|.+|++|.+.... .. .-...++.+.+|++|....+....
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~-~~~~~l~el~~Le~L~~ls~~~~s----- 679 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LS-NDKLLLKELENLEHLENLSITISS----- 679 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cc-cchhhHHhhhcccchhhheeecch-----
Confidence 9999999999999999999998 455667777779999999998664 11 111224555666666655432211
Q ss_pred ccchhhhhhHHhhcCCCCCceEEEEec-ChhhHHhhhccccccccceeeeecccCCCCcee--ecc--cc-cccccceEe
Q 002700 653 EDSVLGELVVEELLGLKYLEVISFNLR-SSRALQSFLSSHKLRSCIQALSLQHFKDTTFLE--ISA--LA-DLKQLNELR 726 (890)
Q Consensus 653 ~~~~~~~~~~~~L~~L~~L~~L~i~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~--l~-~l~~L~~L~ 726 (890)
...+..+..+..|..+..... ..............+.+|+.|.+.+|...+... ..+ .. .++++..+.
T Consensus 680 ------~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 680 ------VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred ------hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 112233333333332221111 001122233334456788999998887643221 001 11 145677777
Q ss_pred ccccCCcceeEecCCCccccccCCCceEEEEecCCCCCCCCc-ccCCCCccEEeeccccccchhcccCcccccccccCCC
Q 002700 727 ISECKKLEELKIDYPGVVQRFVFHGLKKVDIVKCNKLKDLTF-LAFAPNLKSIEVLGCVAMEEIVSVGKFAAVPEVTANL 805 (890)
Q Consensus 727 l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~l~~~~~~~ 805 (890)
+.+|...+ .+.|.. .+++|+.|.+..|+.++++.+ ...+..++.+.+..+ .+...........++.+...-
T Consensus 754 ~~~~~~~r--~l~~~~-----f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~~~~~l~~l~~i~~~~ 825 (889)
T KOG4658|consen 754 ILNCHMLR--DLTWLL-----FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLRMLCSLGGLPQLYWLP 825 (889)
T ss_pred hhcccccc--ccchhh-----ccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccceeeecCCCCceeEecc
Confidence 77888777 344432 378999999999998887654 444444554333321 122110000011111111112
Q ss_pred CCCCcccEEecCCcccccccccCCCCCCCccEEeecCC-CCCCCCCCC
Q 002700 806 NPFAKLQNLKFFGVINLKSIYWKPLPFPNLKSMSFLHC-HKLKKLPLD 852 (890)
Q Consensus 806 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~C-~~L~~lp~~ 852 (890)
-.+++|+.+.+..||++.. +|.+..+.+.+| +++..+|..
T Consensus 826 l~~~~l~~~~ve~~p~l~~-------~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 826 LSFLKLEELIVEECPKLGK-------LPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred cCccchhheehhcCccccc-------CccccccceeccccceeecCCc
Confidence 2344455555555555544 688889999997 889989975
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.35 E-value=4.1e-11 Score=149.36 Aligned_cols=293 Identities=15% Similarity=0.154 Sum_probs=180.1
Q ss_pred CCCcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC-ccCHHHHHHHHHHH
Q 002700 154 IEPTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK-DLRLENIQETIGEK 232 (890)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~ 232 (890)
..+.+|-|+.-.+.+.+ ....+++.|.|++|.||||++..+.+.. . .++|+++.. +.+...+...++..
T Consensus 12 ~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred CccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHH
Confidence 34567888765555532 1467899999999999999999988542 2 699999864 44566666777766
Q ss_pred hCCCccc-----------cccccHHHHHHHHHHHhc--cCcEEEEEeccCCcc--ccc-ccccCCCCCCCCCcEEEEecC
Q 002700 233 IGLLNDT-----------WKNRRIEQKAQDIFRILK--EKKFVLLLDDLWQRV--DLT-KVGVPLPGPQNNASKVVFTTR 296 (890)
Q Consensus 233 l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~--~~~-~l~~~l~~~~~~gs~IiiTtR 296 (890)
++..... ....+.......+...+. +.+++|||||+...+ ... .+...++ ....+.++|||||
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~-~~~~~~~lv~~sR 160 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR-HQPENLTLVVLSR 160 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH-hCCCCeEEEEEeC
Confidence 6311100 001122333444444443 689999999995322 112 2222222 3345678889999
Q ss_pred ChhHhh--cc-cCCCcEecc----CCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 002700 297 SEEVCG--LM-DAQKKFKVA----CLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAMACKKT 369 (890)
Q Consensus 297 ~~~v~~--~~-~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~ 369 (890)
...-.. .+ .......+. +|+.+|+.++|....+..- + .+....|.+.|+|.|+++..++..+.....
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 842111 11 112345555 9999999999987765321 1 245788999999999999998877754321
Q ss_pred HHHHHHHHHHHhccccccCCCccchhhhhhh-hcCCCCCcchhhHHhhhccCCCCceecHHHHHHHHHHcCCCCCccccc
Q 002700 370 PEEWRYAIQVLRTSSSQFAGLGNEVYPLLRF-SYDNLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGFLTERDRFG 448 (890)
Q Consensus 370 ~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~ 448 (890)
.. ......+... ....+...+.- .|+.||+ ..+.++...|+++. ++.+ +... +.
T Consensus 235 ~~--~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~~---~~~~-l~~~-----l~------- 289 (903)
T PRK04841 235 SL--HDSARRLAGI------NASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLRS---MNDA-LIVR-----VT------- 289 (903)
T ss_pred ch--hhhhHhhcCC------CchhHHHHHHHHHHhcCCH-HHHHHHHHhccccc---CCHH-HHHH-----Hc-------
Confidence 10 0001111000 01234444333 3789999 79999999999873 3322 2211 11
Q ss_pred hhhhHHHHHHHHHhhhcccc-c--CcCeEEEehhHHHHHHHHH
Q 002700 449 EQNQGYHILGILLHVCLLEE-G--GDGEVKMHDVVRDMALWIA 488 (890)
Q Consensus 449 ~~~~~~~~l~~L~~~~ll~~-~--~~~~~~mHdlv~~~a~~i~ 488 (890)
....+...+++|.+.+++.. . ....|+.|++++++.+.-.
T Consensus 290 ~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 290 GEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 12345678999999998653 2 3347999999999998654
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.32 E-value=9.9e-12 Score=144.26 Aligned_cols=255 Identities=21% Similarity=0.220 Sum_probs=174.7
Q ss_pred cccEEeeeccccccccCCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCCEEEccCCC
Q 002700 517 NARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESD 596 (890)
Q Consensus 517 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~ 596 (890)
+-..|++..+.+..+|... .++|+.|.+.+|.+..+|. .+++|++|++++|.++.+|.. ..+|+.|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 4556888888888777521 2589999999999988875 358999999999999999854 4689999999999
Q ss_pred CCccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccCccccccccccccchhhhhhHHhhcCCCCCceEEE
Q 002700 597 ISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVVEELLGLKYLEVISF 676 (890)
Q Consensus 597 l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i 676 (890)
++.+|.. +.+|+.|++++|. +..+|. .+++|++|+++++... .++. + ...|+.|.+
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~----~p~~L~~LdLS~N~L~---~Lp~-----------l--p~~L~~L~L 329 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQ-LTSLPV----LPPGLQELSVSDNQLA---SLPA-----------L--PSELCKLWA 329 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCc-cccccc----cccccceeECCCCccc---cCCC-----------C--ccccccccc
Confidence 9998873 3678899999996 788886 2467999988765322 1110 0 123444555
Q ss_pred EecChhhHHhhhccccccccceeeeecccCCCCceeecccccccccceEeccccCCcceeEecCCCccccccCCCceEEE
Q 002700 677 NLRSSRALQSFLSSHKLRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKIDYPGVVQRFVFHGLKKVD 756 (890)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~ 756 (890)
..+....++. ....|+.|+++++.... ++ .+ ..+|+.|+++++ .+..++ . .+++|+.|+
T Consensus 330 s~N~L~~LP~------lp~~Lq~LdLS~N~Ls~-LP--~l--p~~L~~L~Ls~N-~L~~LP-~--------l~~~L~~Ld 388 (788)
T PRK15387 330 YNNQLTSLPT------LPSGLQELSVSDNQLAS-LP--TL--PSELYKLWAYNN-RLTSLP-A--------LPSGLKELI 388 (788)
T ss_pred ccCccccccc------cccccceEecCCCccCC-CC--CC--Ccccceehhhcc-ccccCc-c--------cccccceEE
Confidence 4433322221 23478888888765432 21 12 357788888764 344332 1 145789999
Q ss_pred EecCCCCCCCCcccCCCCccEEeeccccccchhcccCcccccccccCCCCCCCcccEEecCCcccccccccCCCCCCCcc
Q 002700 757 IVKCNKLKDLTFLAFAPNLKSIEVLGCVAMEEIVSVGKFAAVPEVTANLNPFAKLQNLKFFGVINLKSIYWKPLPFPNLK 836 (890)
Q Consensus 757 L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~ 836 (890)
++++ .++.+|.. .++|+.|+++++. +..++. .+.+|+.|++++ ..+..+|.....+++|+
T Consensus 389 Ls~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~---------------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~ 448 (788)
T PRK15387 389 VSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYR-NQLTRLPESLIHLSSET 448 (788)
T ss_pred ecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc---------------chhhhhhhhhcc-CcccccChHHhhccCCC
Confidence 9886 46666653 3689999999864 443321 134678888887 45777887767789999
Q ss_pred EEeecCCC
Q 002700 837 SMSFLHCH 844 (890)
Q Consensus 837 ~L~i~~C~ 844 (890)
.|++++++
T Consensus 449 ~LdLs~N~ 456 (788)
T PRK15387 449 TVNLEGNP 456 (788)
T ss_pred eEECCCCC
Confidence 99998885
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=3.8e-14 Score=127.31 Aligned_cols=129 Identities=26% Similarity=0.453 Sum_probs=70.9
Q ss_pred ccccCcccccEEeeecccccccc-CCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCC
Q 002700 510 PEVKGWANARRISLMDNQITNLS-EIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQ 588 (890)
Q Consensus 510 ~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~ 588 (890)
+.....+++.+|.++.|++..+| .+.++.+|.+|++++|.+..+|.. ++.+++||.|+++-|.+..+|.+||.++-|+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhh
Confidence 34444455555556555555542 345555556666665555555544 4555555555555555555555555555566
Q ss_pred EEEccCCCCC--ccchhhhcCCCCcEEecCccccccccchhhhcCCccccccccc
Q 002700 589 HLDLSESDIS--ELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMF 641 (890)
Q Consensus 589 ~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 641 (890)
+|||.+|++. .+|..+..+..|+-|.++++. .+.+|.+ ++++++||.|.+.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lr 158 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLR 158 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeec
Confidence 6665555544 455555555555555555554 3555554 5555555555554
No 19
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.27 E-value=4e-10 Score=125.83 Aligned_cols=294 Identities=15% Similarity=0.124 Sum_probs=170.2
Q ss_pred CCcccchHHHHHHHHHHhhc----CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHH
Q 002700 155 EPTVVGLQLQLEQVWRCLEE----ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIG 230 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 230 (890)
++.++||++++++|...+.+ .....+.|+|++|+|||++++.++++. ......-.++++++....+...++..+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 46799999999999998843 345678899999999999999999987 2222234567777777777888999999
Q ss_pred HHhCCCccccccccHHHHHHHHHHHhc--cCcEEEEEeccCCcc------cccccccCCCCCCCCCcE--EEEecCChhH
Q 002700 231 EKIGLLNDTWKNRRIEQKAQDIFRILK--EKKFVLLLDDLWQRV------DLTKVGVPLPGPQNNASK--VVFTTRSEEV 300 (890)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~~gs~--IiiTtR~~~v 300 (890)
.++..........+..+....+.+.+. +++.+||||+++.-. .+..+..... ...+++ ||.++....+
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~--~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE--EYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh--ccCCCeEEEEEEECCcch
Confidence 998652211123345667777777775 456899999996422 2222222221 112333 5666555443
Q ss_pred hhccc-------CCCcEeccCCChHHHHHHHHHHhcCc---ccCCChhHHHHHHHHHHHcCCcchHHHHHHHHh--c--C
Q 002700 301 CGLMD-------AQKKFKVACLSDIDAWELFRQKVGEE---ALHSHPAILELAHTVAKECGGLPLALITVGRAM--A--C 366 (890)
Q Consensus 301 ~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~---~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l--~--~ 366 (890)
..... ....+.+++++.++..+++..++... ..-.+..++.+++......|..+.|+.++-... + .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 22111 12467899999999999998876321 111222233334434333566777777664322 1 1
Q ss_pred C---CCHHHHHHHHHHHhccccccCCCccchhhhhhhhcCCCCCcchhhHHhhhc-cCC-CCceecHHHHHHHH--HHcC
Q 002700 367 K---KTPEEWRYAIQVLRTSSSQFAGLGNEVYPLLRFSYDNLPNDTIRSCLLYCS-LYP-EDYCISKENLIDCW--IGEG 439 (890)
Q Consensus 367 ~---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~-~fp-~~~~i~~~~Li~~w--~a~g 439 (890)
. -+.+....+.+.... ....-.+..||. +.|..+..++ ... ....+....+.... +++.
T Consensus 266 ~~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 244555554443311 222345778888 4444443333 221 11234544444322 2211
Q ss_pred CCCCccccchhhhHHHHHHHHHhhhcccc
Q 002700 440 FLTERDRFGEQNQGYHILGILLHVCLLEE 468 (890)
Q Consensus 440 ~i~~~~~~~~~~~~~~~l~~L~~~~ll~~ 468 (890)
+-.. .-.......++..|...+++..
T Consensus 332 ~~~~---~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 332 LGYE---PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred cCCC---cCcHHHHHHHHHHHHhcCCeEE
Confidence 1000 0123456678889999998875
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=2.6e-11 Score=141.86 Aligned_cols=101 Identities=31% Similarity=0.422 Sum_probs=51.0
Q ss_pred cccEEeeeccccccccCCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCCEEEccCCC
Q 002700 517 NARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESD 596 (890)
Q Consensus 517 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~ 596 (890)
+++.|++.+|.+..+|.. ..++|++|++++|.+..+|..+. .+|+.|++++|.+..+|..+. .+|++|++++|+
T Consensus 200 ~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 200 QITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred CCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEECcCCc
Confidence 455555555555554431 12355555555555555544321 245555555555555554443 345555555555
Q ss_pred CCccchhhhcCCCCcEEecCccccccccch
Q 002700 597 ISELPEELKALVNLKCLNLEWTRYLITIPR 626 (890)
Q Consensus 597 l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 626 (890)
++.+|..+. .+|++|++++|. +..+|.
T Consensus 274 L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~ 300 (754)
T PRK15370 274 ISCLPENLP--EELRYLSVYDNS-IRTLPA 300 (754)
T ss_pred cCccccccC--CCCcEEECCCCc-cccCcc
Confidence 555555442 355555555553 444543
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.23 E-value=3.9e-11 Score=140.39 Aligned_cols=116 Identities=25% Similarity=0.422 Sum_probs=93.6
Q ss_pred cccEEeeeccccccccCCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCCEEEccCCC
Q 002700 517 NARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESD 596 (890)
Q Consensus 517 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~ 596 (890)
+...|.+.++.+..+|.. -.++|+.|++++|.+..+|...+ .+|++|++++|.++.+|..+. .+|+.|+|++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 456677877777777642 13589999999999998887654 589999999999999998764 489999999999
Q ss_pred CCccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccCcc
Q 002700 597 ISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGAS 644 (890)
Q Consensus 597 l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 644 (890)
+..+|..+. .+|+.|++++|. +..+|.. + ..+|++|++.++.
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l--~~sL~~L~Ls~N~ 294 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNK-ISCLPEN-L--PEELRYLSVYDNS 294 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCc-cCccccc-c--CCCCcEEECCCCc
Confidence 999998875 589999999886 7888875 3 2578999987654
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.23 E-value=5.6e-13 Score=149.47 Aligned_cols=268 Identities=22% Similarity=0.285 Sum_probs=130.5
Q ss_pred cccEEeeeccccccccCCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCCEEEccCCC
Q 002700 517 NARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESD 596 (890)
Q Consensus 517 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~ 596 (890)
++++|....|.+..+..-+.-.+|.+++++.+.+..+| +++..+.+|..++..+|.+..+|..+....+|++|.+.+|.
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh
Confidence 34444444444443222233345666666666665555 55566666666666666666666666666666666666666
Q ss_pred CCccchhhhcCCCCcEEecCccccccccchhhhcCCcc-cccccccCccccccccccccchhhhhhHHhhcCCCCCceEE
Q 002700 597 ISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSR-LHVLRMFGASNNVLDEASEDSVLGELVVEELLGLKYLEVIS 675 (890)
Q Consensus 597 l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 675 (890)
+..+|+....++.|++|+|..+. +..+|+..+..+.. |+.|+.+... ....+......... |+.|.
T Consensus 299 l~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~---l~~lp~~~e~~~~~---------Lq~Ly 365 (1081)
T KOG0618|consen 299 LEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNK---LSTLPSYEENNHAA---------LQELY 365 (1081)
T ss_pred hhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhcc---ccccccccchhhHH---------HHHHH
Confidence 66666666666666666666554 55555543322222 3333322111 11000000000000 11111
Q ss_pred EEecChhhHHhhhccccccccceeeeecccCCCCceeecccccccccceEeccccCCcceeEecCCCccccccCCCceEE
Q 002700 676 FNLRSSRALQSFLSSHKLRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKIDYPGVVQRFVFHGLKKV 755 (890)
Q Consensus 676 i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L 755 (890)
+..+... ++.........+|+.|+++++.-..+.. +.+.+++.|+.|++||+ .++.++.... .+..|+.|
T Consensus 366 lanN~Lt--d~c~p~l~~~~hLKVLhLsyNrL~~fpa-s~~~kle~LeeL~LSGN-kL~~Lp~tva------~~~~L~tL 435 (1081)
T KOG0618|consen 366 LANNHLT--DSCFPVLVNFKHLKVLHLSYNRLNSFPA-SKLRKLEELEELNLSGN-KLTTLPDTVA------NLGRLHTL 435 (1081)
T ss_pred HhcCccc--ccchhhhccccceeeeeecccccccCCH-HHHhchHHhHHHhcccc-hhhhhhHHHH------hhhhhHHH
Confidence 1100000 0001111223456666666654322222 45566677777777764 3444432211 24556666
Q ss_pred EEecCCCCCCCCcccCCCCccEEeeccccccchhcccCcccccccccCCCCCCCcccEEecCCccc
Q 002700 756 DIVKCNKLKDLTFLAFAPNLKSIEVLGCVAMEEIVSVGKFAAVPEVTANLNPFAKLQNLKFFGVIN 821 (890)
Q Consensus 756 ~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 821 (890)
...+. .+..+|.+..+|.|+.++++ |+++..+... .... -|+|++|++++...
T Consensus 436 ~ahsN-~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~----------~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 436 RAHSN-QLLSFPELAQLPQLKVLDLS-CNNLSEVTLP----------EALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred hhcCC-ceeechhhhhcCcceEEecc-cchhhhhhhh----------hhCC-CcccceeeccCCcc
Confidence 55543 46666777777888888886 4555544221 1111 17888888887665
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=6.9e-13 Score=119.33 Aligned_cols=134 Identities=30% Similarity=0.526 Sum_probs=120.9
Q ss_pred cCccccCcccccEEeeecccccccc-CCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCcc--ccChhccCc
Q 002700 508 EAPEVKGWANARRISLMDNQITNLS-EIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELT--ELPVGIAQL 584 (890)
Q Consensus 508 ~~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~--~lp~~i~~l 584 (890)
..|....+.++..|++.+|+++++| +++.+++||.|++.-|.+...|.. |+.++.|++|||++|++. .+|..|..+
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynnl~e~~lpgnff~m 126 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNNLNENSLPGNFFYM 126 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccccccccCCcchhHH
Confidence 3466777889999999999999987 578999999999999988777766 899999999999999887 689999999
Q ss_pred cCCCEEEccCCCCCccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccCcc
Q 002700 585 VSLQHLDLSESDISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGAS 644 (890)
Q Consensus 585 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 644 (890)
..|+-|.|+.|.+.-+|.++++|++||.|.++.+. +-++|.+ ++.++.|++|++.+..
T Consensus 127 ~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 127 TTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccce
Confidence 99999999999999999999999999999999997 7889998 8999999999998754
No 24
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.20 E-value=5.2e-09 Score=115.63 Aligned_cols=296 Identities=14% Similarity=0.108 Sum_probs=168.8
Q ss_pred CcccchHHHHHHHHHHhhc----CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCC---CeEEEEEeCCccCHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE----ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNF---SCVIWVVVSKDLRLENIQET 228 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~~~~ 228 (890)
+.++||++++++|...+.+ .....+.|+|++|+|||++++.+++......... -.++|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5789999999999999864 3456899999999999999999998762111111 24677887777777889999
Q ss_pred HHHHhC---CCccccccccHHHHHHHHHHHhc--cCcEEEEEeccCCcc-c----ccccccC--CCCCCCCCcEEEEecC
Q 002700 229 IGEKIG---LLNDTWKNRRIEQKAQDIFRILK--EKKFVLLLDDLWQRV-D----LTKVGVP--LPGPQNNASKVVFTTR 296 (890)
Q Consensus 229 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~----~~~l~~~--l~~~~~~gs~IiiTtR 296 (890)
|++++. .... ....+..+....+.+.+. +++++||||+++.-. . +..+... .....+....+|.+|+
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999883 2211 122344555566666663 568899999996431 1 1222211 1101112334455554
Q ss_pred ChhHhhccc-------CCCcEeccCCChHHHHHHHHHHhcC--cccCCChhHHHHHHHHHHHcCCcchHH-HHHHHHh--
Q 002700 297 SEEVCGLMD-------AQKKFKVACLSDIDAWELFRQKVGE--EALHSHPAILELAHTVAKECGGLPLAL-ITVGRAM-- 364 (890)
Q Consensus 297 ~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlPLai-~~~g~~l-- 364 (890)
.......+. ....+.+++++.+|..+++..++.. .....+++..+....++....|.|-.+ .++-...
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 443211111 1246889999999999999988642 111223334455566777777888443 3332111
Q ss_pred c--C---CCCHHHHHHHHHHHhccccccCCCccchhhhhhhhcCCCCCcchhhHHhhhccC--CCCceecHHHHHHHHH-
Q 002700 365 A--C---KKTPEEWRYAIQVLRTSSSQFAGLGNEVYPLLRFSYDNLPNDTIRSCLLYCSLY--PEDYCISKENLIDCWI- 436 (890)
Q Consensus 365 ~--~---~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~f--p~~~~i~~~~Li~~w~- 436 (890)
+ . .-+.+..+.+.+.+.. ....-+...||. +.+..+..++.. .++..+....+...+-
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 1 1234444443333211 122335567887 555444433311 1334456666655332
Q ss_pred -HcCCCCCccccchhhhHHHHHHHHHhhhccccc
Q 002700 437 -GEGFLTERDRFGEQNQGYHILGILLHVCLLEEG 469 (890)
Q Consensus 437 -a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 469 (890)
++. +.. .........+++..|...|+++..
T Consensus 320 ~~~~-~~~--~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCED-IGV--DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHh-cCC--CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 121 111 112346677888999999998753
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.19 E-value=2.6e-09 Score=112.62 Aligned_cols=182 Identities=12% Similarity=0.187 Sum_probs=113.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR 254 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (890)
.+.+++.|+|++|+||||+++.+++.. .. ... ..+|+ +....+..+++..++..++.... ..+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 455689999999999999999999886 21 111 22333 33345677888999998877542 1222223333332
Q ss_pred H----h-ccCcEEEEEeccCCc--ccccccccCCC--CCCCCCcEEEEecCChhHhhcc----------cCCCcEeccCC
Q 002700 255 I----L-KEKKFVLLLDDLWQR--VDLTKVGVPLP--GPQNNASKVVFTTRSEEVCGLM----------DAQKKFKVACL 315 (890)
Q Consensus 255 ~----l-~~kr~LlVlDdv~~~--~~~~~l~~~l~--~~~~~gs~IiiTtR~~~v~~~~----------~~~~~~~l~~L 315 (890)
. . .+++.++|+||++.- ..++.+..... ........|++|.... ....+ .....+.++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 2 578899999999753 23444432211 0122233455665433 21111 11346789999
Q ss_pred ChHHHHHHHHHHhcCcccCCC-hhHHHHHHHHHHHcCCcchHHHHHHHHh
Q 002700 316 SDIDAWELFRQKVGEEALHSH-PAILELAHTVAKECGGLPLALITVGRAM 364 (890)
Q Consensus 316 ~~~ea~~Lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~GlPLai~~~g~~l 364 (890)
+.+|..+++...+........ .-..+..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999877643221111 1224788999999999999999888765
No 26
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.18 E-value=5.5e-11 Score=122.68 Aligned_cols=196 Identities=20% Similarity=0.225 Sum_probs=102.8
Q ss_pred ccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHH--------
Q 002700 158 VVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETI-------- 229 (890)
Q Consensus 158 ~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i-------- 229 (890)
|+||++++++|.+.+..+..+.+.|+|+.|+|||+|++.+.+.. +..-..++|+.......... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNESS-LRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHHH-HHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhhH-HHHHHHHHHHHH
Confidence 79999999999999987778899999999999999999999986 22112344444433332221 1121
Q ss_pred --HHHhC--CCccc------cccccHHHHHHHHHHHhc--cCcEEEEEeccCCcc-cc-------cccccCCCC-CCCCC
Q 002700 230 --GEKIG--LLNDT------WKNRRIEQKAQDIFRILK--EKKFVLLLDDLWQRV-DL-------TKVGVPLPG-PQNNA 288 (890)
Q Consensus 230 --~~~l~--~~~~~------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~-------~~l~~~l~~-~~~~g 288 (890)
.+.+. .+... ............+.+.+. +++++||+||+..-. .. ..+...+.. .....
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 11111 11000 011222333444445553 356999999985433 11 111111110 12233
Q ss_pred cEEEEecCChhHhhc--------ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHH
Q 002700 289 SKVVFTTRSEEVCGL--------MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALIT 359 (890)
Q Consensus 289 s~IiiTtR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 359 (890)
..+|+++....+... .+....+.+++|+.+++++++...+... ... +.-.+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 344555544444322 2233458999999999999999876443 111 12245669999999999988764
No 27
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.16 E-value=3.5e-10 Score=121.37 Aligned_cols=274 Identities=16% Similarity=0.153 Sum_probs=153.2
Q ss_pred CcccchHHHHHHHHHHhhc-----CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE-----ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIG 230 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 230 (890)
..|||+++.++++..++.. +....+.++|++|+|||+||+.+++.. ...+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchh-HHHHH
Confidence 3689999999999888863 345678899999999999999999886 2222 1222211111222 22223
Q ss_pred HHhCCCc----cccccccHHHHHHHHHHHhccCcEEEEEeccCCcccccccccCCCCCCCCCcEEEEecCChhHhhccc-
Q 002700 231 EKIGLLN----DTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGLMD- 305 (890)
Q Consensus 231 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~~~- 305 (890)
..++... ++....+ ....+.+...+.+.+..+|+|+..+...+. ..++ +.+-|..||+...+.....
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~---~~~~----~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVR---LDLP----PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccccee---ecCC----CeEEEEecCCccccCHHHHh
Confidence 3332211 0001111 122345666777777778888765444433 2222 2455666777654432211
Q ss_pred -CCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHhccc
Q 002700 306 -AQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAMACKKTPEEWRYAIQVLRTSS 384 (890)
Q Consensus 306 -~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~ 384 (890)
....+.+++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..++..+ |.... ......
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCC
Confidence 1346799999999999999988765433333 3567889999999997665554432 11100 000000
Q ss_pred cccCCCccchhhhhhhhcCCCCCcchhhHHh-hhccCCCCceecHHHHHHHHHHcCCCCCccccchhhhHHHHHH-HHHh
Q 002700 385 SQFAGLGNEVYPLLRFSYDNLPNDTIRSCLL-YCSLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQGYHILG-ILLH 462 (890)
Q Consensus 385 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~l~-~L~~ 462 (890)
-. .+.-......+...|..+++ +.+..+. ....++.+ .+..+.+.... | .........++ .|++
T Consensus 217 it-~~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 217 IN-RDIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQ 282 (305)
T ss_pred cC-HHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHH
Confidence 00 00001222335667788887 5555554 44555543 34444433322 1 12345666677 6999
Q ss_pred hhcccccC
Q 002700 463 VCLLEEGG 470 (890)
Q Consensus 463 ~~ll~~~~ 470 (890)
++|++...
T Consensus 283 ~~li~~~~ 290 (305)
T TIGR00635 283 IGFLQRTP 290 (305)
T ss_pred cCCcccCC
Confidence 99997643
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.13 E-value=1.2e-09 Score=117.87 Aligned_cols=273 Identities=14% Similarity=0.137 Sum_probs=152.6
Q ss_pred CcccchHHHHHHHHHHhhc-----CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE-----ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIG 230 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 230 (890)
..|+|+++.++.+...+.. .....+.|+|++|+||||+|+.+++.. . ..+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEeccc-ccChHHHHHHH
Confidence 5699999999998877752 345688999999999999999999987 2 221 1222211 11112223333
Q ss_pred HHhCCCc----cccccccHHHHHHHHHHHhccCcEEEEEeccCCcccccccccCCCCCCCCCcEEEEecCChhHhhccc-
Q 002700 231 EKIGLLN----DTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGLMD- 305 (890)
Q Consensus 231 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~~~- 305 (890)
..+.... ++....+ ....+.++..+.+.+..+|+|+..+..... ..+| +.+-|..||+...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~----~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP----PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCC----CceEEeecCCcccCCHHHHH
Confidence 3332211 0000000 112233555666667777777754332221 1222 2345666777554432211
Q ss_pred -CCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHhccc
Q 002700 306 -AQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAMACKKTPEEWRYAIQVLRTSS 384 (890)
Q Consensus 306 -~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~ 384 (890)
....+.++++++++..+++.+.+.......++ +....|++.|+|.|-.+..+...+. .|.... ....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~---~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEIDE---EGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCC
Confidence 13468999999999999999888765433333 6789999999999965554443321 121100 0000
Q ss_pred cccCCCccchhhhhhhhcCCCCCcchhhHHh-hhccCCCCceecHHHHHHHHHHcCCCCCccccchhhhHHHHHH-HHHh
Q 002700 385 SQFAGLGNEVYPLLRFSYDNLPNDTIRSCLL-YCSLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQGYHILG-ILLH 462 (890)
Q Consensus 385 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~l~-~L~~ 462 (890)
-. ...-......+...+..|++ ..+..+. ....|+.+ .+..+.+.... | ......++.++ .|++
T Consensus 238 I~-~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 238 IT-KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQ 303 (328)
T ss_pred CC-HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHH
Confidence 00 00001333445667788887 4555553 56667665 45555554332 1 12334555566 7999
Q ss_pred hhccccc
Q 002700 463 VCLLEEG 469 (890)
Q Consensus 463 ~~ll~~~ 469 (890)
.+|++..
T Consensus 304 ~~li~~~ 310 (328)
T PRK00080 304 QGFIQRT 310 (328)
T ss_pred cCCcccC
Confidence 9999765
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.09 E-value=5.2e-09 Score=117.95 Aligned_cols=290 Identities=16% Similarity=0.167 Sum_probs=185.9
Q ss_pred CcccchHHHHHHHHHHhhcC-CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHHh
Q 002700 156 PTVVGLQLQLEQVWRCLEEE-SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD-LRLENIQETIGEKI 233 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l 233 (890)
...|-|.. +++.|... +.+.+.|..++|.|||||+..+.... ..-..+.|.++... .++......++..+
T Consensus 19 ~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 19 DNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred ccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 34466654 55555544 78999999999999999999998743 34467999998754 46778888888877
Q ss_pred CCCccc-----------cccccHHHHHHHHHHHhc--cCcEEEEEeccC---CcccccccccCCCCCCCCCcEEEEecCC
Q 002700 234 GLLNDT-----------WKNRRIEQKAQDIFRILK--EKKFVLLLDDLW---QRVDLTKVGVPLPGPQNNASKVVFTTRS 297 (890)
Q Consensus 234 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~~gs~IiiTtR~ 297 (890)
+...+. ....+...+.+.+...+. .++..+||||-. ++.--..+...+. ....+-.+|||||+
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~-~~P~~l~lvv~SR~ 169 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLK-HAPENLTLVVTSRS 169 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHH-hCCCCeEEEEEecc
Confidence 632211 112234445555555554 368999999964 2222222222222 34467889999998
Q ss_pred hhHhh---cccCCCcEec----cCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHHHHhcCCCCH
Q 002700 298 EEVCG---LMDAQKKFKV----ACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAMACKKTP 370 (890)
Q Consensus 298 ~~v~~---~~~~~~~~~l----~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~ 370 (890)
..-.. .--.+...++ =.++.+|+-++|....+..- ...-.+.+.+..+|-+-|+..++=.++.+.+.
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 75321 1111223333 35889999999988764322 12457889999999999999888777743333
Q ss_pred HHHHHHHHHHhccccccCCCccchhh-hhhhhcCCCCCcchhhHHhhhccCCCCceecHHHHHHHHHHcCCCCCccccch
Q 002700 371 EEWRYAIQVLRTSSSQFAGLGNEVYP-LLRFSYDNLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGFLTERDRFGE 449 (890)
Q Consensus 371 ~~w~~~~~~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~ 449 (890)
+.-...+. +..+-+.+ ...--++.||+ +++.+++.||+++.- .+.|+.. .+.
T Consensus 244 ~q~~~~Ls----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~------------Ltg 296 (894)
T COG2909 244 EQSLRGLS----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNA------------LTG 296 (894)
T ss_pred HHHhhhcc----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHH------------Hhc
Confidence 32211111 11011111 12234678999 899999999998652 2233332 234
Q ss_pred hhhHHHHHHHHHhhhccccc---CcCeEEEehhHHHHHHHH
Q 002700 450 QNQGYHILGILLHVCLLEEG---GDGEVKMHDVVRDMALWI 487 (890)
Q Consensus 450 ~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a~~i 487 (890)
++.+..++++|.+++|+-.. ....|+.|.+..+|-+.-
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhh
Confidence 56788899999999997532 577899999999997743
No 30
>PF05729 NACHT: NACHT domain
Probab=98.96 E-value=4.8e-09 Score=101.67 Aligned_cols=142 Identities=18% Similarity=0.277 Sum_probs=89.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCC----CCeEEEEEeCCccCHH---HHHHHHHHHhCCCccccccccHHHHHH
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKFLQRPTN----FSCVIWVVVSKDLRLE---NIQETIGEKIGLLNDTWKNRRIEQKAQ 250 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 250 (890)
+++.|+|.+|+||||+++.++..... ... +...+|+..+...... .+...+..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 58999999999999999999988732 222 4567777765543322 34444444332211 11111
Q ss_pred HHHHHh-ccCcEEEEEeccCCccc---------ccc-cccCCCCCCCCCcEEEEecCChhH---hhcccCCCcEeccCCC
Q 002700 251 DIFRIL-KEKKFVLLLDDLWQRVD---------LTK-VGVPLPGPQNNASKVVFTTRSEEV---CGLMDAQKKFKVACLS 316 (890)
Q Consensus 251 ~l~~~l-~~kr~LlVlDdv~~~~~---------~~~-l~~~l~~~~~~gs~IiiTtR~~~v---~~~~~~~~~~~l~~L~ 316 (890)
.+...+ ..++++||+|++++... +.. +...++....++.+++||+|.... .........+.+.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 122222 57899999999864322 111 222233123468999999998876 3333444689999999
Q ss_pred hHHHHHHHHHHh
Q 002700 317 DIDAWELFRQKV 328 (890)
Q Consensus 317 ~~ea~~Lf~~~~ 328 (890)
+++..+++.+.+
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.90 E-value=1.1e-10 Score=119.29 Aligned_cols=102 Identities=25% Similarity=0.400 Sum_probs=56.7
Q ss_pred ceEEEecccccccccchhhccCCcceEEEcCCCCcccc-ChhccCccCCCEEEccC-CCCCccchh-hhcCCCCcEEecC
Q 002700 540 LLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTEL-PVGIAQLVSLQHLDLSE-SDISELPEE-LKALVNLKCLNLE 616 (890)
Q Consensus 540 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~-~~l~~lp~~-~~~l~~L~~L~l~ 616 (890)
-..+.|..|.++.+|+..|+.+++||.||||+|+|+.+ |..|..|..|-.|-+-+ |+|+.+|+. ++.|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 34455555556666666666666666666666666655 55555555554444433 566666553 5555556655555
Q ss_pred ccccccccchhhhcCCcccccccccC
Q 002700 617 WTRYLITIPRQLVSNLSRLHVLRMFG 642 (890)
Q Consensus 617 ~~~~l~~lp~~~i~~l~~L~~L~l~~ 642 (890)
-|+ +..++.+.+..|++|..|.+.+
T Consensus 149 an~-i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 149 ANH-INCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred hhh-hcchhHHHHHHhhhcchhcccc
Confidence 554 4555555555555555555544
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.88 E-value=9.7e-11 Score=119.58 Aligned_cols=291 Identities=21% Similarity=0.248 Sum_probs=178.2
Q ss_pred EEEcCCccccCccccCcccccEEeeeccccccccC--CCCCCCceEEEecccccccccchhhccCCcceEEEcCC-CCcc
Q 002700 499 LVYAGVGLTEAPEVKGWANARRISLMDNQITNLSE--IPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSH-AELT 575 (890)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~l~ 575 (890)
+...+.+++++|.. -......+.+..|.+..+|. ++.+++||.|++++|.+..+.++.|..++.|-.|-+-+ |+|+
T Consensus 51 VdCr~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 33445555555532 23467788899999999874 78999999999999999999999999999886666655 8999
Q ss_pred ccChh-ccCccCCCEEEccCCCCCccch-hhhcCCCCcEEecCccccccccchhhhcCCcccccccccCcc------ccc
Q 002700 576 ELPVG-IAQLVSLQHLDLSESDISELPE-ELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGAS------NNV 647 (890)
Q Consensus 576 ~lp~~-i~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~------~~~ 647 (890)
.+|.. |++|..|+-|.+.-|++..++. .+..|++|..|.+.++. +..++.+.+..+.+++++.+.... ..+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccch
Confidence 99875 7889999999999999987665 58899999999999986 788888778889999998875322 111
Q ss_pred cccccccchhhhhhHHhhcCCCCCceEEEEecChhhHHhhhccccccccceee---eecccCCCCceeecccccccccce
Q 002700 648 LDEASEDSVLGELVVEELLGLKYLEVISFNLRSSRALQSFLSSHKLRSCIQAL---SLQHFKDTTFLEISALADLKQLNE 724 (890)
Q Consensus 648 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L---~l~~~~~~~~~~l~~l~~l~~L~~ 724 (890)
...+- .....+.+...-.....+.... ..+.. ...+.-+++.+ -...+......+...+..+++|++
T Consensus 209 la~~~------a~~~ietsgarc~~p~rl~~~R---i~q~~-a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 209 LADDL------AMNPIETSGARCVSPYRLYYKR---INQED-ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRK 278 (498)
T ss_pred hhhHH------hhchhhcccceecchHHHHHHH---hcccc-hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceE
Confidence 10000 0000111111100000000000 00000 00000111111 011111111222235677888999
Q ss_pred EeccccCCcceeEecCCCccccccCCCceEEEEecCCCCCCCC--cccCCCCccEEeeccccccchhcccCccccccccc
Q 002700 725 LRISECKKLEELKIDYPGVVQRFVFHGLKKVDIVKCNKLKDLT--FLAFAPNLKSIEVLGCVAMEEIVSVGKFAAVPEVT 802 (890)
Q Consensus 725 L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~l~~~~ 802 (890)
|+++++ .++.+...|.. -...++.|.|... ++..+. .+..+..|+.|+|.+. .++.+..
T Consensus 279 lnlsnN-~i~~i~~~aFe-----~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~----------- 339 (498)
T KOG4237|consen 279 LNLSNN-KITRIEDGAFE-----GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAP----------- 339 (498)
T ss_pred eccCCC-ccchhhhhhhc-----chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEec-----------
Confidence 998875 34444444433 2567888888774 455544 2567888888888884 3443322
Q ss_pred CCCCCCCcccEEecCCcc
Q 002700 803 ANLNPFAKLQNLKFFGVI 820 (890)
Q Consensus 803 ~~~~~~~~L~~L~l~~~~ 820 (890)
..+....+|.+|.+-..|
T Consensus 340 ~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ccccccceeeeeehccCc
Confidence 244556677777776543
No 33
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.86 E-value=3.6e-08 Score=118.13 Aligned_cols=306 Identities=17% Similarity=0.215 Sum_probs=174.5
Q ss_pred ccchHHHHHHHHHHhhc---CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC---HHHHHHHHHH
Q 002700 158 VVGLQLQLEQVWRCLEE---ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLR---LENIQETIGE 231 (890)
Q Consensus 158 ~vGr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~---~~~~~~~i~~ 231 (890)
++||+.+++.|...+.+ +...++.+.|.+|||||+|++.|.....+.+..|-...+-....+.. ..+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999998865 56779999999999999999999998733322222111111111211 2334444444
Q ss_pred Hh-------------------CCCccc--------------------cccccHHHHH-----HHHHHHh-ccCcEEEEEe
Q 002700 232 KI-------------------GLLNDT--------------------WKNRRIEQKA-----QDIFRIL-KEKKFVLLLD 266 (890)
Q Consensus 232 ~l-------------------~~~~~~--------------------~~~~~~~~~~-----~~l~~~l-~~kr~LlVlD 266 (890)
++ +..... ..+...+.+. ..+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 44 110000 0011111111 1122222 3469999999
Q ss_pred cc-CCc-ccccccccCCCCCCC----CCcEEE--EecCCh--hHhhcccCCCcEeccCCChHHHHHHHHHHhcCcccCCC
Q 002700 267 DL-WQR-VDLTKVGVPLPGPQN----NASKVV--FTTRSE--EVCGLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSH 336 (890)
Q Consensus 267 dv-~~~-~~~~~l~~~l~~~~~----~gs~Ii--iTtR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 336 (890)
|+ |-+ ..+.-+..... ... ....|. .|.+.. .+-........+.|.||+..+...+.....+...
T Consensus 162 DlhWaD~~SL~lL~~lm~-~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 162 DLHWADSASLKLLQLLMD-RIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred cccccChhHHHHHHHHHH-hcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 99 532 22222211111 000 011222 233322 1122223446899999999999999999887533
Q ss_pred hhHHHHHHHHHHHcCCcchHHHHHHHHhcCC------CCHHHHHHHHHHHhccccccCCCccchhhhhhhhcCCCCCcch
Q 002700 337 PAILELAHTVAKECGGLPLALITVGRAMACK------KTPEEWRYAIQVLRTSSSQFAGLGNEVYPLLRFSYDNLPNDTI 410 (890)
Q Consensus 337 ~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~ 410 (890)
....+....|+++.+|+|+.+..+-..+... .+...|..-...+.. . +..+.+...+..-.+.||. ..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~-~~~~~vv~~l~~rl~kL~~-~t 310 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----L-ATTDAVVEFLAARLQKLPG-TT 310 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----c-hhhHHHHHHHHHHHhcCCH-HH
Confidence 2224678999999999999999988877653 334445432211111 1 1112355668888999999 79
Q ss_pred hhHHhhhccCCCCceecHHHHHHHHHHcCCCCCccccchhhhHHHHHHHHHhhhccccc-------CcCeE---EEehhH
Q 002700 411 RSCLLYCSLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQGYHILGILLHVCLLEEG-------GDGEV---KMHDVV 480 (890)
Q Consensus 411 k~cfl~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~-------~~~~~---~mHdlv 480 (890)
+..+...|++...+ +.+.|...+-. ....++....+.|....++..+ ..... ..||.|
T Consensus 311 ~~Vl~~AA~iG~~F--~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 311 REVLKAAACIGNRF--DLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHHhCccC--CHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 99999999986544 45555544421 1234445555555555554321 11122 578888
Q ss_pred HHHHHH
Q 002700 481 RDMALW 486 (890)
Q Consensus 481 ~~~a~~ 486 (890)
++.|-.
T Consensus 379 qqaaY~ 384 (849)
T COG3899 379 QQAAYN 384 (849)
T ss_pred HHHHhc
Confidence 888753
No 34
>PRK06893 DNA replication initiation factor; Validated
Probab=98.85 E-value=1.5e-08 Score=103.00 Aligned_cols=152 Identities=14% Similarity=0.207 Sum_probs=94.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRI 255 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (890)
..+.+.|+|++|+|||+||+++++... .....+.|+.+.... .. ...+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~-----------------------~~~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YF-----------------------SPAVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hh-----------------------hHHHHhh
Confidence 346789999999999999999999862 223345666553110 00 0011112
Q ss_pred hccCcEEEEEeccCCc---ccccc-cccCCCCCCCCCcEEE-EecCC---------hhHhhcccCCCcEeccCCChHHHH
Q 002700 256 LKEKKFVLLLDDLWQR---VDLTK-VGVPLPGPQNNASKVV-FTTRS---------EEVCGLMDAQKKFKVACLSDIDAW 321 (890)
Q Consensus 256 l~~kr~LlVlDdv~~~---~~~~~-l~~~l~~~~~~gs~Ii-iTtR~---------~~v~~~~~~~~~~~l~~L~~~ea~ 321 (890)
+. +.-+|||||+|.. ..|.. +...+......|..+| +|++. +.+.+.+.....++++++++++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 2348999999852 33442 2222221122355554 45544 355566666678999999999999
Q ss_pred HHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 322 ELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 322 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
+++.+.+.......++ +...-|++++.|..-.+..+
T Consensus 168 ~iL~~~a~~~~l~l~~---~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 168 IVLQRNAYQRGIELSD---EVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHH
Confidence 9999888754433333 66788888888776655443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=3.5e-09 Score=100.80 Aligned_cols=127 Identities=29% Similarity=0.400 Sum_probs=46.2
Q ss_pred CcccccEEeeeccccccccCCC-CCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhc-cCccCCCEEE
Q 002700 514 GWANARRISLMDNQITNLSEIP-TCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGI-AQLVSLQHLD 591 (890)
Q Consensus 514 ~~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~l~~L~~L~ 591 (890)
+..+.+.|++.++.+..+..+. .+.+|+.|++++|.+..+.. +..++.|++|++++|.++.+++.+ ..+++|+.|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3446777888888877776665 46778888888887776653 667788888888888887776555 3577888888
Q ss_pred ccCCCCCccc--hhhhcCCCCcEEecCccccccccch---hhhcCCcccccccccCc
Q 002700 592 LSESDISELP--EELKALVNLKCLNLEWTRYLITIPR---QLVSNLSRLHVLRMFGA 643 (890)
Q Consensus 592 L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~ 643 (890)
+++|+|..+- ..+..+++|++|++.+|. +...+. -++..+++|+.|+...+
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 8887776543 346677788888887776 333332 24566777777765543
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=7.1e-10 Score=120.35 Aligned_cols=83 Identities=31% Similarity=0.286 Sum_probs=37.0
Q ss_pred CCCceEEEecccccccc----cchhhccCCcceEEEcCCCCccc-------cChhccCccCCCEEEccCCCCC-ccchhh
Q 002700 537 CPHLLTLFLNKNKLQMI----HNDFFQFMPSLKVLNLSHAELTE-------LPVGIAQLVSLQHLDLSESDIS-ELPEEL 604 (890)
Q Consensus 537 ~~~L~~L~l~~~~~~~~----~~~~~~~l~~Lr~L~l~~~~l~~-------lp~~i~~l~~L~~L~L~~~~l~-~lp~~~ 604 (890)
+.+|+.|.+.++.+... ....+...+.|+.|+++++.+.. ++..+.++.+|++|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 34455555555543211 11123344445555555554331 2233444555555555555444 233333
Q ss_pred hcCCC---CcEEecCccc
Q 002700 605 KALVN---LKCLNLEWTR 619 (890)
Q Consensus 605 ~~l~~---L~~L~l~~~~ 619 (890)
..+.+ |++|++++|.
T Consensus 102 ~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 102 ESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHhccCcccEEEeeCCc
Confidence 33333 5555555554
No 37
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.81 E-value=2.8e-08 Score=103.03 Aligned_cols=158 Identities=19% Similarity=0.249 Sum_probs=98.9
Q ss_pred HHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHH
Q 002700 168 VWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQ 247 (890)
Q Consensus 168 l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 247 (890)
|.+++..+.+.-.-+||++|+||||||+.+.... ...|... +-..+ .-+++.+
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~-----sAv~~-------------------gvkdlr~ 91 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEAL-----SAVTS-------------------GVKDLRE 91 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEEe-----ccccc-------------------cHHHHHH
Confidence 4555666788889999999999999999999876 4444322 11111 1112222
Q ss_pred HHHHHH-HHhccCcEEEEEeccC--CcccccccccCCCCCCCCCcEEEE--ecCChhH---hhcccCCCcEeccCCChHH
Q 002700 248 KAQDIF-RILKEKKFVLLLDDLW--QRVDLTKVGVPLPGPQNNASKVVF--TTRSEEV---CGLMDAQKKFKVACLSDID 319 (890)
Q Consensus 248 ~~~~l~-~~l~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~~gs~Iii--TtR~~~v---~~~~~~~~~~~l~~L~~~e 319 (890)
..+.-+ ....++|.+|++|.|. +..+-+.+. | .-.+|..|+| ||.++.. ........++.+++|+.+|
T Consensus 92 i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p-~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~d 167 (436)
T COG2256 92 IIEEARKNRLLGRRTILFLDEIHRFNKAQQDALL---P-HVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSED 167 (436)
T ss_pred HHHHHHHHHhcCCceEEEEehhhhcChhhhhhhh---h-hhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHH
Confidence 222222 2335899999999995 334444443 3 3456777777 7777754 2223456799999999999
Q ss_pred HHHHHHHHhcCcccCCC---hhH-HHHHHHHHHHcCCcchH
Q 002700 320 AWELFRQKVGEEALHSH---PAI-LELAHTVAKECGGLPLA 356 (890)
Q Consensus 320 a~~Lf~~~~~~~~~~~~---~~~-~~~~~~i~~~c~GlPLa 356 (890)
-.+++.+.+-.....-. ..+ ++....++..++|---+
T Consensus 168 i~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 168 IKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 99999884432211111 111 34667788888876543
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.81 E-value=2.9e-10 Score=117.22 Aligned_cols=161 Identities=17% Similarity=0.220 Sum_probs=105.5
Q ss_pred cceeeeecccCCCCceeeccc-ccccccceEeccccCCcceeEecCCCccccccCCCceEEEEecCCCCCCCCc--c-cC
Q 002700 696 CIQALSLQHFKDTTFLEISAL-ADLKQLNELRISECKKLEELKIDYPGVVQRFVFHGLKKVDIVKCNKLKDLTF--L-AF 771 (890)
Q Consensus 696 ~L~~L~l~~~~~~~~~~l~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l-~~ 771 (890)
-+..+++.+|..++...+..+ ..+..|+.|..++|..+........+ ...++|+.|.+.+|..+++... + .+
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg----~~~~~L~~l~l~~c~~fsd~~ft~l~rn 344 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG----QHCHNLQVLELSGCQQFSDRGFTMLGRN 344 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh----cCCCceEEEeccccchhhhhhhhhhhcC
Confidence 344555556654444332111 23567888888888776543222211 1257899999999988776543 2 36
Q ss_pred CCCccEEeeccccccchhcccCcccccccccCCCCCCCcccEEecCCccccccc-----ccCCCCCCCccEEeecCCCCC
Q 002700 772 APNLKSIEVLGCVAMEEIVSVGKFAAVPEVTANLNPFAKLQNLKFFGVINLKSI-----YWKPLPFPNLKSMSFLHCHKL 846 (890)
Q Consensus 772 l~~L~~L~l~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l-----~~~~~~~~~L~~L~i~~C~~L 846 (890)
.+.|+.|++.+|..+.+- ++...-.++|.|+.|.+++|.....- ......+..|+.+++.+||.+
T Consensus 345 ~~~Le~l~~e~~~~~~d~----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDG----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred Chhhhhhcccccceehhh----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 788888888888655432 12223457899999999988765543 223445788999999999998
Q ss_pred CCCCCCCCcc--cccceEEEchhhhh
Q 002700 847 KKLPLDSNSA--RERNIVIRGDRKWW 870 (890)
Q Consensus 847 ~~lp~~~~~~--~L~~l~i~~~~~~~ 870 (890)
+.--+..... +|+.+++.+|+..+
T Consensus 415 ~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 415 TDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hHHHHHHHhhCcccceeeeechhhhh
Confidence 8855444433 88999999998776
No 39
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.73 E-value=1e-07 Score=97.49 Aligned_cols=168 Identities=13% Similarity=0.118 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCcccc
Q 002700 161 LQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTW 240 (890)
Q Consensus 161 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 240 (890)
.+..++.+.+++.......|.|+|.+|+|||++|+.+++... ......++++++.-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----------
Confidence 445677777776556678999999999999999999998862 2333455665432211 00
Q ss_pred ccccHHHHHHHHHHHhccCcEEEEEeccCCcc---cc-cccccCCCCCCCCCcEEEEecCChh---------HhhcccCC
Q 002700 241 KNRRIEQKAQDIFRILKEKKFVLLLDDLWQRV---DL-TKVGVPLPGPQNNASKVVFTTRSEE---------VCGLMDAQ 307 (890)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~-~~l~~~l~~~~~~gs~IiiTtR~~~---------v~~~~~~~ 307 (890)
..+...+.+ .-+||+||++.-. .| ..+...+......+.+||+||+... +...+...
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 011112222 2389999996422 22 2232222101123457888887532 22222334
Q ss_pred CcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 002700 308 KKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVG 361 (890)
Q Consensus 308 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 361 (890)
..+.++++++++...++...+.......++ +....+++.+.|.|..+..+-
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQLPD---EVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHHH
Confidence 678999999999999988765332222222 566778888999998776554
No 40
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.70 E-value=2.9e-07 Score=104.92 Aligned_cols=208 Identities=14% Similarity=0.134 Sum_probs=123.6
Q ss_pred CCcccchHHHHHHHHHHhhc----C-CeeEEEEEcCCCChHHHHHHHHHhhhccC--CCCCC--eEEEEEeCCccCHHHH
Q 002700 155 EPTVVGLQLQLEQVWRCLEE----E-SVGIVGLYGMGGVGKTTLLTHINNKFLQR--PTNFS--CVIWVVVSKDLRLENI 225 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~----~-~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~--~~~wv~~s~~~~~~~~ 225 (890)
++.+.|||+++++|...|.+ . ...++.|+|.+|+|||++++.|.+..... ..... .+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45689999999999998864 2 33578899999999999999998876211 11222 3677777777788889
Q ss_pred HHHHHHHhCCCccccccccHHHHHHHHHHHhc---cCcEEEEEeccCCcc--cccccccCCCCCCCCCcEEEE--ecCCh
Q 002700 226 QETIGEKIGLLNDTWKNRRIEQKAQDIFRILK---EKKFVLLLDDLWQRV--DLTKVGVPLPGPQNNASKVVF--TTRSE 298 (890)
Q Consensus 226 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~~gs~Iii--TtR~~ 298 (890)
+..|.+++...... ......+....+...+. +...+||||+|+.-. .-+.+...+......+++|+| +|.+.
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999888433211 22233445555555542 234589999996321 111111111101123455544 33322
Q ss_pred h--------HhhcccCCCcEeccCCChHHHHHHHHHHhcCcc-cCCChhHHHHHHHHHHHcCCcchHHHHHHHHh
Q 002700 299 E--------VCGLMDAQKKFKVACLSDIDAWELFRQKVGEEA-LHSHPAILELAHTVAKECGGLPLALITVGRAM 364 (890)
Q Consensus 299 ~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l 364 (890)
. +...++ ...+..+|++.++-.+++..++.... .-.+..++-+|+.++...|-.-.||.++-.+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2 222222 23466799999999999999876432 11223334445555555555667776664444
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=3.4e-08 Score=94.14 Aligned_cols=120 Identities=26% Similarity=0.354 Sum_probs=58.7
Q ss_pred EEEcCCccccCcccc-CcccccEEeeeccccccccCCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCcccc
Q 002700 499 LVYAGVGLTEAPEVK-GWANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTEL 577 (890)
Q Consensus 499 ~~~~~~~~~~~~~~~-~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l 577 (890)
+...+..+..+.... .+.+++.|++++|.+..++.+..+++|++|++++|.+..+...+...+++|++|++++|.|..+
T Consensus 24 L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 24 LNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp ------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred ccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCCh
Confidence 444555555555554 4678999999999999999999999999999999999988765556799999999999988765
Q ss_pred C--hhccCccCCCEEEccCCCCCccch----hhhcCCCCcEEecCcc
Q 002700 578 P--VGIAQLVSLQHLDLSESDISELPE----ELKALVNLKCLNLEWT 618 (890)
Q Consensus 578 p--~~i~~l~~L~~L~L~~~~l~~lp~----~~~~l~~L~~L~l~~~ 618 (890)
- ..+..+++|++|+|.+|.++..+. -+..+++|+.||-...
T Consensus 104 ~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 104 NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 3 356789999999999999987664 4788999999986543
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.65 E-value=2.1e-07 Score=103.70 Aligned_cols=175 Identities=17% Similarity=0.211 Sum_probs=105.2
Q ss_pred CcccchHHHHHH---HHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQ---VWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEK 232 (890)
Q Consensus 156 ~~~vGr~~~~~~---l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 232 (890)
..+||++..+.. +.+++..+....+.++|++|+||||+|+.+++.. ...|. .++.+.. ....
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~---~l~a~~~-~~~~-------- 76 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPFE---ALSAVTS-GVKD-------- 76 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEecccc-cHHH--------
Confidence 458998887666 7787877777788999999999999999999876 23331 1221110 1111
Q ss_pred hCCCccccccccHHHHHHHHHHH-hccCcEEEEEeccCCc--ccccccccCCCCCCCCCcEEEE--ecCChhHh---hcc
Q 002700 233 IGLLNDTWKNRRIEQKAQDIFRI-LKEKKFVLLLDDLWQR--VDLTKVGVPLPGPQNNASKVVF--TTRSEEVC---GLM 304 (890)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Iii--TtR~~~v~---~~~ 304 (890)
..+........ ..+++.+|++|+++.- ...+.+...+. .|..++| ||.+.... ...
T Consensus 77 ------------ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 77 ------------LREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred ------------HHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHHh
Confidence 11111222111 1457889999999742 33444444433 2444444 44443211 111
Q ss_pred cCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 002700 305 DAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVG 361 (890)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 361 (890)
.....+.+.+++.++...++.+.+.........-..+....|++.|+|.|..+..+.
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 223678999999999999998865432100001123567888999999987664443
No 43
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.60 E-value=4.6e-08 Score=106.13 Aligned_cols=192 Identities=19% Similarity=0.096 Sum_probs=83.8
Q ss_pred hccCCcceEEEcCCCCcc-ccChhccCccC---CCEEEccCCCCC-----ccchhhhcC-CCCcEEecCcccccc----c
Q 002700 558 FQFMPSLKVLNLSHAELT-ELPVGIAQLVS---LQHLDLSESDIS-----ELPEELKAL-VNLKCLNLEWTRYLI----T 623 (890)
Q Consensus 558 ~~~l~~Lr~L~l~~~~l~-~lp~~i~~l~~---L~~L~L~~~~l~-----~lp~~~~~l-~~L~~L~l~~~~~l~----~ 623 (890)
+..+++|+.|++++|.+. ..+..+..+.+ |++|++++|.+. .+...+..+ .+|+.|++++|.... .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 444555666666655544 22333333333 666666655554 122334444 556666666554211 1
Q ss_pred cchhhhcCCcccccccccCccccccccccccchhhhhhHHhhcCCCCCceEEEEecChh--hHHhhhccccccccceeee
Q 002700 624 IPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVVEELLGLKYLEVISFNLRSSR--ALQSFLSSHKLRSCIQALS 701 (890)
Q Consensus 624 lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~--~~~~l~~~~~~~~~L~~L~ 701 (890)
++.. +..+.+|++|++.++..... ........+..+++|+.|+++.+... ....+......+++|+.|+
T Consensus 157 ~~~~-~~~~~~L~~L~l~~n~l~~~--------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 157 LAKA-LRANRDLKELNLANNGIGDA--------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227 (319)
T ss_pred HHHH-HHhCCCcCEEECcCCCCchH--------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEe
Confidence 2211 33445555555554432100 00112223344455555555543321 1122222223335566666
Q ss_pred ecccCCCCceeecccc-----cccccceEeccccCCcceeEecCCCccccccCCCceEEEEecCC
Q 002700 702 LQHFKDTTFLEISALA-----DLKQLNELRISECKKLEELKIDYPGVVQRFVFHGLKKVDIVKCN 761 (890)
Q Consensus 702 l~~~~~~~~~~l~~l~-----~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~ 761 (890)
++++.... ..+..+. ..+.|++|++++|.... ....... .....+++|+.++++++.
T Consensus 228 ls~n~l~~-~~~~~l~~~~~~~~~~L~~L~l~~n~i~~-~~~~~l~-~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 228 LGDNNLTD-AGAAALASALLSPNISLLTLSLSCNDITD-DGAKDLA-EVLAEKESLLELDLRGNK 289 (319)
T ss_pred cCCCcCch-HHHHHHHHHHhccCCCceEEEccCCCCCc-HHHHHHH-HHHhcCCCccEEECCCCC
Confidence 66654221 1111111 23678888888774321 0000000 011234678888888864
No 44
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=1.2e-06 Score=99.77 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=111.4
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCC-------------------CCeEEEEE
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTN-------------------FSCVIWVV 215 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 215 (890)
.++||.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+.. ..... |.-+++++
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL-nCe~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL-NCETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 4689999999999999987654 466799999999999999998876 21111 11122222
Q ss_pred eCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH----hccCcEEEEEeccCCc--ccccccccCCCCCCCCCc
Q 002700 216 VSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRI----LKEKKFVLLLDDLWQR--VDLTKVGVPLPGPQNNAS 289 (890)
Q Consensus 216 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs 289 (890)
.+... .+++..+.+... ..++.-++|||+++.- ..+..+...+. ....+.
T Consensus 95 Aas~r-----------------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE-EPP~~v 150 (830)
T PRK07003 95 AASNR-----------------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE-EPPPHV 150 (830)
T ss_pred ccccc-----------------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHH-hcCCCe
Confidence 21111 112221111111 1245568899999643 34565655554 334467
Q ss_pred EEEEecCChh-Hh-hcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc-hHHHHHHH
Q 002700 290 KVVFTTRSEE-VC-GLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP-LALITVGR 362 (890)
Q Consensus 290 ~IiiTtR~~~-v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~g~ 362 (890)
++|+||++.. +. .....-..+.++.++.++..+.+.+.+..+....+ .+....|++.++|.. -|+..+-.
T Consensus 151 ~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred EEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7777776654 22 11122357899999999999999888765543333 366788999998865 45555443
No 45
>PRK08727 hypothetical protein; Validated
Probab=98.58 E-value=4.7e-07 Score=92.28 Aligned_cols=167 Identities=14% Similarity=0.092 Sum_probs=96.7
Q ss_pred ccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCc
Q 002700 158 VVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLN 237 (890)
Q Consensus 158 ~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 237 (890)
++|-...+..+...........+.|+|.+|+|||+|++++++... .....+.++++.+ ....+.
T Consensus 22 ~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~------- 85 (233)
T PRK08727 22 IAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR------- 85 (233)
T ss_pred cCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH-------
Confidence 334444444444433333445799999999999999999998862 2233555665321 111000
Q ss_pred cccccccHHHHHHHHHHHhccCcEEEEEeccCCc---ccccc-cccCCCCCCCCCcEEEEecCChh---------Hhhcc
Q 002700 238 DTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR---VDLTK-VGVPLPGPQNNASKVVFTTRSEE---------VCGLM 304 (890)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~-l~~~l~~~~~~gs~IiiTtR~~~---------v~~~~ 304 (890)
...+.+ .+.-+||+||+... ..|.. +...+......|..||+|++... +.+.+
T Consensus 86 -------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 86 -------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred -------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 011112 13348999998532 12221 21111101124667999998542 22333
Q ss_pred cCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 305 DAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
.....+++++++.++-.+++.+++.......++ +....|++.++|-.-.+
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~---e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRRGLALDE---AAIDWLLTHGERELAGL 201 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhCCCCHHHH
Confidence 445688999999999999999877543333333 56778888887665544
No 46
>PRK04195 replication factor C large subunit; Provisional
Probab=98.57 E-value=2.8e-06 Score=96.60 Aligned_cols=181 Identities=20% Similarity=0.226 Sum_probs=109.8
Q ss_pred CcccchHHHHHHHHHHhhc---C-CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE---E-SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGE 231 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~---~-~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 231 (890)
..++|.++.++++.+++.. + ..+.+.|+|++|+||||+|++++++. . ++ ++-++++....... ...++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el---~--~~-~ielnasd~r~~~~-i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY---G--WE-VIELNASDQRTADV-IERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc---C--CC-EEEEcccccccHHH-HHHHHH
Confidence 4689999999999999864 2 26789999999999999999999986 1 22 23334444332222 222222
Q ss_pred HhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCcc------cccccccCCCCCCCCCcEEEEecCChh-Hhh--
Q 002700 232 KIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRV------DLTKVGVPLPGPQNNASKVVFTTRSEE-VCG-- 302 (890)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~~gs~IiiTtR~~~-v~~-- 302 (890)
...... .....++-+||+|+++.-. ....+...+. ..+..||+|+.+.. ...
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK---KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH---cCCCCEEEeccCccccchhh
Confidence 211100 0011367899999996421 1333333332 12344666664432 111
Q ss_pred cccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHHHHhc
Q 002700 303 LMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAMA 365 (890)
Q Consensus 303 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~ 365 (890)
.-.....+.+.+++.++....+.+.+.......++ +....|++.++|-.-.+......+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~---eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDD---EALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 11234578999999999999988877554433333 6778899999988766544333343
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.4e-08 Score=103.86 Aligned_cols=208 Identities=21% Similarity=0.244 Sum_probs=114.3
Q ss_pred CCCCCceEEEecccccccccc-hhhccCCcceEEEcCCCCcc---ccChhccCccCCCEEEccCCCCCccchh--hhcCC
Q 002700 535 PTCPHLLTLFLNKNKLQMIHN-DFFQFMPSLKVLNLSHAELT---ELPVGIAQLVSLQHLDLSESDISELPEE--LKALV 608 (890)
Q Consensus 535 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~l~---~lp~~i~~l~~L~~L~L~~~~l~~lp~~--~~~l~ 608 (890)
+++++|+...+.++.....+. .....+++++.|||+.|-+. .+-+-..+|++|+.|+|+.|++....++ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467788888888777554442 34567888888888887444 3344556788888888888876644332 23566
Q ss_pred CCcEEecCccccccccchhhhcCCcccccccccCccccccccccccchhhhhhHHhhcCCCCCceEEEEecChhhHHhhh
Q 002700 609 NLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVVEELLGLKYLEVISFNLRSSRALQSFL 688 (890)
Q Consensus 609 ~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~l~ 688 (890)
+|+.|.|+.|..-..--......+++|..|++........ . .
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~------------------------------------~--~ 239 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI------------------------------------K--A 239 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce------------------------------------e--c
Confidence 7777777777522111111234556666666654320000 0 0
Q ss_pred ccccccccceeeeecccCCCCceeecccccccccceEeccccCCcceeE-ecCCCccccccCCCceEEEEecCCC--CCC
Q 002700 689 SSHKLRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELK-IDYPGVVQRFVFHGLKKVDIVKCNK--LKD 765 (890)
Q Consensus 689 ~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~~~L~~L~L~~c~~--l~~ 765 (890)
.....+..|+.|+|+++.............++.|+.|+++.|. +.++. ++.........|++|+.|++...+- +..
T Consensus 240 ~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 240 TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred chhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccc
Confidence 0111223566666666655555444445566777777776553 22221 1110111223477788887777553 444
Q ss_pred CCcccCCCCccEEeec
Q 002700 766 LTFLAFAPNLKSIEVL 781 (890)
Q Consensus 766 l~~l~~l~~L~~L~l~ 781 (890)
+..+..+++|+.|.+.
T Consensus 319 l~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 319 LNHLRTLENLKHLRIT 334 (505)
T ss_pred cchhhccchhhhhhcc
Confidence 4445556666666643
No 48
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.53 E-value=1.1e-06 Score=96.02 Aligned_cols=193 Identities=11% Similarity=0.086 Sum_probs=108.5
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCC-eEEEEEeCCccCHHHHHHHHHH---
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFS-CVIWVVVSKDLRLENIQETIGE--- 231 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~--- 231 (890)
..++|++..++.+.+++..+..+.+.++|++|+||||+|+.+.+... ...+. ..+.++++...+. ....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFDQ--GKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhhc--chhhhhcCcc
Confidence 46899999999999999877766789999999999999999998862 12222 2344444321100 0000000
Q ss_pred ---HhCCCccccccccHHHHHHHHH----HHh--ccCcEEEEEeccCCc--ccccccccCCCCCCCCCcEEEEecCChh-
Q 002700 232 ---KIGLLNDTWKNRRIEQKAQDIF----RIL--KEKKFVLLLDDLWQR--VDLTKVGVPLPGPQNNASKVVFTTRSEE- 299 (890)
Q Consensus 232 ---~l~~~~~~~~~~~~~~~~~~l~----~~l--~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IiiTtR~~~- 299 (890)
.++... . ......+....+. ... .+.+-+||+||+..- .....+...+. .....+++|+||....
T Consensus 91 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le-~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 91 FAHFLGTDK-R-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIME-QYSRTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhhhh-h-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHH-hccCCCeEEEEeCChhh
Confidence 000000 0 0000111111111 111 134558999999532 22233333332 2234567777765432
Q ss_pred Hhhcc-cCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHH
Q 002700 300 VCGLM-DAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALI 358 (890)
Q Consensus 300 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 358 (890)
+...+ .....+.+.+++.++...++...+.......+ .+....+++.++|.+-.+.
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 22111 22357888999999999999887654432322 3577888889988765543
No 49
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.52 E-value=8.6e-06 Score=94.63 Aligned_cols=202 Identities=14% Similarity=0.077 Sum_probs=118.3
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCC---CeEEEEEeCC---ccCHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNF---SCVIWVVVSK---DLRLENIQETI 229 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~---~~~~~~~~~~i 229 (890)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+.. ..+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4689999999998888876667789999999999999999998765 222222 1223443321 11222221111
Q ss_pred ---------------HHHhCCCc----------------cccccccHHHHHHHHHHHhccCcEEEEEeccCCc--ccccc
Q 002700 230 ---------------GEKIGLLN----------------DTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR--VDLTK 276 (890)
Q Consensus 230 ---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~ 276 (890)
+...+... ++.... ....+..+.+.+.++++.++-|+.|.. ..|..
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 11111110 000111 123456788888889999987776643 45777
Q ss_pred cccCCCCCCCCCcEEEE--ecCChhHh-hcc-cCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC
Q 002700 277 VGVPLPGPQNNASKVVF--TTRSEEVC-GLM-DAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGG 352 (890)
Q Consensus 277 l~~~l~~~~~~gs~Iii--TtR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 352 (890)
+...+. ...+...|+| ||++.... ..+ .....+.+.+++.+|.+.++.+.+.......+ .+....|.+++..
T Consensus 312 ik~~~~-~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~~ 387 (615)
T TIGR02903 312 IKKLFE-EGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTIE 387 (615)
T ss_pred hhhhcc-cCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCc
Confidence 766555 4444444555 66654321 111 12246788999999999999987754322222 2455566666654
Q ss_pred cchHHHHHHHH
Q 002700 353 LPLALITVGRA 363 (890)
Q Consensus 353 lPLai~~~g~~ 363 (890)
-+-|+..++..
T Consensus 388 gRraln~L~~~ 398 (615)
T TIGR02903 388 GRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHH
Confidence 46666666544
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=2.7e-06 Score=91.31 Aligned_cols=177 Identities=14% Similarity=0.163 Sum_probs=115.0
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhc---cCCCCCCeEEEEEe-CCccCHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFL---QRPTNFSCVIWVVV-SKDLRLENIQETIG 230 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~~-s~~~~~~~~~~~i~ 230 (890)
..++|.+..++.+.+.+..+.. ....++|+.|+||||+|+.++.... ....|+|...|... +......++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 3578999999999999987654 4668999999999999999998641 12345666555442 222333332 2233
Q ss_pred HHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccC--CcccccccccCCCCCCCCCcEEEEecCChhHh-h-cccC
Q 002700 231 EKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLW--QRVDLTKVGVPLPGPQNNASKVVFTTRSEEVC-G-LMDA 306 (890)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~-~-~~~~ 306 (890)
+.+.... ..+++-++|+|+++ +...++.+...+. ....++.+|++|.+.+.. . ....
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LE-epp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIE-EPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhc-CCCCCeEEEEEeCChHhCcHHHHhh
Confidence 3322110 12455566777663 5556777777776 556788888888765432 1 1223
Q ss_pred CCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHH
Q 002700 307 QKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALIT 359 (890)
Q Consensus 307 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 359 (890)
...+.+.++++++....+.+.+... + .+.+..++..++|.|..+..
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~~----~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYNDI----K---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcCC----C---HHHHHHHHHHcCCCHHHHHH
Confidence 4688999999999988887654311 1 23467888999999876543
No 51
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.4e-06 Score=101.16 Aligned_cols=178 Identities=16% Similarity=0.161 Sum_probs=109.2
Q ss_pred CcccchHHHHHHHHHHhhcCCeeE-EEEEcCCCChHHHHHHHHHhhhccCCCCCC-------------------eEEEEE
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGI-VGLYGMGGVGKTTLLTHINNKFLQRPTNFS-------------------CVIWVV 215 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~v-v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-------------------~~~wv~ 215 (890)
..+||.+..++.|.+++..+++.- +.++|+.|+||||+|+.+++... ...... -++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 468999999999999998876654 58999999999999999998862 111100 011111
Q ss_pred eCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH-HhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEE
Q 002700 216 VSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR-ILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVV 292 (890)
Q Consensus 216 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Ii 292 (890)
......+ .++.++...+.. ...+++-++|||++.. ....+.+...+. ....+.++|
T Consensus 95 Aas~~kV--------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE-EPP~~vrFI 153 (944)
T PRK14949 95 AASRTKV--------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE-EPPEHVKFL 153 (944)
T ss_pred cccccCH--------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-ccCCCeEEE
Confidence 1100111 111222222211 1246778999999963 345555555554 333455665
Q ss_pred Eec-CChhHhhc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHH
Q 002700 293 FTT-RSEEVCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALI 358 (890)
Q Consensus 293 iTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 358 (890)
++| ....+... ...-..|.+++|+.++....+.+.+........ .+....|++.++|.|--+.
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE---AEALTLLAKAANGSMRDAL 218 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 555 44444311 223368999999999999999887654332222 3567889999999885443
No 52
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=9.8e-06 Score=87.49 Aligned_cols=200 Identities=15% Similarity=0.211 Sum_probs=128.0
Q ss_pred CcccchHHHHHHHHHHhhc----CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE----ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGE 231 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 231 (890)
..+.+||.+++++...|.. +...-+.|+|.+|+|||+.++.+.+.........+ +++|++-...+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4589999999999988864 33445999999999999999999999832222222 889999999999999999999
Q ss_pred HhCCCccccccccHHHHHHHHHHHhc--cCcEEEEEeccCCcccc--cccccCCCCCCCCCcEE--EEecCChhHh----
Q 002700 232 KIGLLNDTWKNRRIEQKAQDIFRILK--EKKFVLLLDDLWQRVDL--TKVGVPLPGPQNNASKV--VFTTRSEEVC---- 301 (890)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~--~~l~~~l~~~~~~gs~I--iiTtR~~~v~---- 301 (890)
+++.... ......+....+.+.+. ++.+++|||+++.-..- +.+-..+......+++| |..+.+....
T Consensus 96 ~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 9963221 34555666777777774 58899999999632111 11111111011124443 3344444332
Q ss_pred ----hcccCCCcEeccCCChHHHHHHHHHHhc---CcccCCChhHHHHHHHHHHHcC-CcchHHHHH
Q 002700 302 ----GLMDAQKKFKVACLSDIDAWELFRQKVG---EEALHSHPAILELAHTVAKECG-GLPLALITV 360 (890)
Q Consensus 302 ----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~-GlPLai~~~ 360 (890)
..++. ..+..+|.+.+|-.+.+..++. ... ..+++..++...++..-+ -.-.||..+
T Consensus 174 ~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 22233 3378899999999999988764 222 233333444444444444 445555554
No 53
>PF13173 AAA_14: AAA domain
Probab=98.48 E-value=2.5e-07 Score=84.77 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=79.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL 256 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 256 (890)
.+++.|.|+.|+||||++++++.+. . ....+++++..+....... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 4689999999999999999999886 2 3355666665443221100 000 223333334
Q ss_pred ccCcEEEEEeccCCcccccccccCCCCCCCCCcEEEEecCChhHhhc------ccCCCcEeccCCChHHH
Q 002700 257 KEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGL------MDAQKKFKVACLSDIDA 320 (890)
Q Consensus 257 ~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~------~~~~~~~~l~~L~~~ea 320 (890)
..++.+++||++....+|......+. +..+..+|++|+.+...... .+....++|.||+..|-
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~-d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLV-DNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHH-HhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 44788999999987778877766665 44456899999988766532 12234679999998773
No 54
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=3.6e-06 Score=92.02 Aligned_cols=189 Identities=16% Similarity=0.187 Sum_probs=106.4
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
..++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++.. ........ .+...-..-..+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l-~c~~~~~~-------~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL-NCQNGITS-------NPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh-cCCCCCCC-------CCCCCCHHHHHHhcCCC
Confidence 4689999999999999887654 467899999999999999999876 21110000 00000000001100000
Q ss_pred CCc---cccccccHHHHHHHHHHHh-----ccCcEEEEEeccCCc--ccccccccCCCCCCCCCcEEEEecCCh-hHhhc
Q 002700 235 LLN---DTWKNRRIEQKAQDIFRIL-----KEKKFVLLLDDLWQR--VDLTKVGVPLPGPQNNASKVVFTTRSE-EVCGL 303 (890)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IiiTtR~~-~v~~~ 303 (890)
... +.......++ ...+.+.+ .+++-++|+|++..- ..++.+...+. ......++|++|.+. .+...
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lE-e~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLE-EPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEEEcCChHhhhHH
Confidence 000 0000011111 11222221 245669999999643 23555555554 334456677666543 33221
Q ss_pred -ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 304 -MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 304 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
.+....+++.+++.++..+.+...+.......+ .+.+..|++.++|.|-.+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 122367899999999999988876654332222 256778999999988543
No 55
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.47 E-value=1.1e-06 Score=83.04 Aligned_cols=124 Identities=24% Similarity=0.180 Sum_probs=74.2
Q ss_pred cchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCcc
Q 002700 159 VGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLND 238 (890)
Q Consensus 159 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 238 (890)
+|++..+..+...+.....+.+.|+|.+|+||||+|+.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47888999999988776678999999999999999999999872 222456666655433322211111000
Q ss_pred ccccccHHHHHHHHHHHhccCcEEEEEeccCCc-----ccccccccCCCCC--CCCCcEEEEecCChh
Q 002700 239 TWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR-----VDLTKVGVPLPGP--QNNASKVVFTTRSEE 299 (890)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~--~~~gs~IiiTtR~~~ 299 (890)
............++.++|+||++.. ..+..+....... ...+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111223456789999999742 1222222222100 135778888887653
No 56
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=1.3e-08 Score=109.13 Aligned_cols=121 Identities=27% Similarity=0.397 Sum_probs=97.1
Q ss_pred cccEEeeeccccccccC-CCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCCEEEccCC
Q 002700 517 NARRISLMDNQITNLSE-IPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSES 595 (890)
Q Consensus 517 ~~~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~ 595 (890)
.....+++.|.+..+|. ...|..|..+.+..|.+..+|.. +.++..|.+|||+.|.++.+|..++.|+ |+.|-+++|
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 44556677777777663 45567788888888888777765 6788889999999999998998888775 889999999
Q ss_pred CCCccchhhhcCCCCcEEecCccccccccchhhhcCCccccccccc
Q 002700 596 DISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMF 641 (890)
Q Consensus 596 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 641 (890)
+++.+|..++.+.+|.+||.+.|. +..+|.. ++.+.+|+.|++.
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vr 197 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVR 197 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHh
Confidence 999999999988899999998886 7888876 7888888888775
No 57
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=3.8e-06 Score=94.72 Aligned_cols=202 Identities=16% Similarity=0.105 Sum_probs=112.6
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
.+++|.+..++.|..++..+... .+.++|++|+||||+|+.+++.. .....+...+|.+.+... ...-...-...+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 45899999999999998877654 56999999999999999998886 221222223333221100 0000000000000
Q ss_pred CCccccccccHHHHHHHHHH-HhccCcEEEEEeccCCc--ccccccccCCCCCCCCCcEEEEecC-ChhHhhcc-cCCCc
Q 002700 235 LLNDTWKNRRIEQKAQDIFR-ILKEKKFVLLLDDLWQR--VDLTKVGVPLPGPQNNASKVVFTTR-SEEVCGLM-DAQKK 309 (890)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IiiTtR-~~~v~~~~-~~~~~ 309 (890)
... .....++.++...+.. -..+++-++|+|+++.. ..+..+...+. .......+|++|. ...+.... .....
T Consensus 92 ~~~-~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE-ep~~~t~~Il~t~~~~kl~~~I~SRc~~ 169 (504)
T PRK14963 92 AAS-NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE-EPPEHVIFILATTEPEKMPPTILSRTQH 169 (504)
T ss_pred ccc-cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHH-hCCCCEEEEEEcCChhhCChHHhcceEE
Confidence 000 0000111111111111 12356679999999632 34555655554 3334455555554 33332222 23457
Q ss_pred EeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH-HHHHHHh
Q 002700 310 FKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL-ITVGRAM 364 (890)
Q Consensus 310 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai-~~~g~~l 364 (890)
+.+.+++.++....+.+.+.......+ .+....|++.++|.+--+ ..+-..+
T Consensus 170 ~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 170 FRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999987755442222 356788999999988544 4443333
No 58
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=3.7e-06 Score=94.80 Aligned_cols=191 Identities=14% Similarity=0.141 Sum_probs=108.9
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
..+||.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++.. .-....+.. .++.=..-+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-nC~~~~~~~-------pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-NCETGVTST-------PCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCcCCCCC-------CCccCHHHHHHhcCCC
Confidence 4689999999999999987754 577999999999999999998876 111100000 0000000000100000
Q ss_pred CCc---cccccccHHHH---HHHHH-HHhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCChh-Hh-hc
Q 002700 235 LLN---DTWKNRRIEQK---AQDIF-RILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRSEE-VC-GL 303 (890)
Q Consensus 235 ~~~---~~~~~~~~~~~---~~~l~-~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~~~-v~-~~ 303 (890)
... +.......++. ...+. .-..+++-++|+|+|.. ......+...+. ....+.++|++|.+.. +. ..
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLE-EPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLE-EPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-cCCCCcEEEEEECChHhhhHHH
Confidence 000 00001112221 11111 11235667999999963 334555555554 3334566777665543 21 11
Q ss_pred ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHH
Q 002700 304 MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALI 358 (890)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 358 (890)
......+++.+++.++....+.+.+.......+ .+....|++.++|.+-.+.
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 233468899999999999999887765443333 2567889999999875443
No 59
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.43 E-value=4.1e-06 Score=90.73 Aligned_cols=179 Identities=12% Similarity=0.115 Sum_probs=105.1
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCe-EEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSC-VIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
.+++|++..++.+..++..+..+.+.++|.+|+||||+|+.+++... ...+.. .+-+..+.......+...+ .++.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~~~i~~~~~~~~~~~~~~~~i-~~~~ 93 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRENFLELNASDERGIDVIRNKI-KEFA 93 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccccceEEeccccccchHHHHHHH-HHHH
Confidence 35899999999999999877777789999999999999999998862 122211 1112222222211111111 1110
Q ss_pred CCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc--ccccccccCCCCCCCCCcEEEEecCCh-hHhhc-ccCCCcE
Q 002700 235 LLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR--VDLTKVGVPLPGPQNNASKVVFTTRSE-EVCGL-MDAQKKF 310 (890)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IiiTtR~~-~v~~~-~~~~~~~ 310 (890)
... ......+-++++|++..- .....+...+. .....+++|+++... .+... ......+
T Consensus 94 ~~~----------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le-~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 94 RTA----------------PVGGAPFKIIFLDEADNLTSDAQQALRRTME-MYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred hcC----------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHh-cCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 000 000123568999998532 22333433333 233446677666432 22111 1223468
Q ss_pred eccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 311 KVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 311 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
+++++++++....+...+.......+ .+....+++.++|.+--+
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 99999999999998887765443233 356788899999987654
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=3.3e-06 Score=95.01 Aligned_cols=195 Identities=16% Similarity=0.168 Sum_probs=109.4
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCC-CCeEEEEEeCCccCHHHHHHHHHHH-
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTN-FSCVIWVVVSKDLRLENIQETIGEK- 232 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~- 232 (890)
.++||.+..++.|.+.+..++.. .+.++|..|+||||+|+.+.+...-.... -.... +..+..-..-+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHcCC
Confidence 46899999999999999877654 56899999999999999998876210000 00000 0000000000001000
Q ss_pred ----hCCCccccccccHHHHHHHHHHH----hccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEE-EecCChhHh
Q 002700 233 ----IGLLNDTWKNRRIEQKAQDIFRI----LKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVV-FTTRSEEVC 301 (890)
Q Consensus 233 ----l~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Ii-iTtR~~~v~ 301 (890)
+.+... ....+++..+.+... ..++.-++|||+++. ...++.+...+. ....+.++| +||....+.
T Consensus 92 hpDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE-EPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 92 FVDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE-EPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CCcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc-cCCCCceEEEEeCChHhhh
Confidence 000000 011122222211111 145667999999963 345566666554 333345554 455544443
Q ss_pred hc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 302 GL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 302 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
.. ...-..+.++.++.++..+.+.+.+.......+ .+....|++.++|.|.-...+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 21 122367899999999999999887654432222 245688899999998654433
No 61
>PLN03025 replication factor C subunit; Provisional
Probab=98.42 E-value=2.7e-06 Score=91.51 Aligned_cols=180 Identities=14% Similarity=0.127 Sum_probs=105.9
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCC-eEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFS-CVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
..++|.+..++.+..++..+..+-+.++|++|+||||+|+.+++... ...|. .++-+..+....... .+.+++...
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~-vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDV-VRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHH-HHHHHHHHH
Confidence 45799999899888888777777788999999999999999998861 12222 222223333222221 122211110
Q ss_pred CCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc--ccccccccCCCCCCCCCcEEEEecCCh-hHhhc-ccCCCcE
Q 002700 235 LLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR--VDLTKVGVPLPGPQNNASKVVFTTRSE-EVCGL-MDAQKKF 310 (890)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IiiTtR~~-~v~~~-~~~~~~~ 310 (890)
.... ..-.++.-++|+|+++.- .....+...+. .....+++|+++... .+... ......+
T Consensus 90 ~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE-~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 90 QKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTME-IYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred hccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHh-cccCCceEEEEeCCccccchhHHHhhhcc
Confidence 0000 000235669999999642 22233333332 233456777766443 22111 1123578
Q ss_pred eccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 311 KVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 311 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
+++++++++....+...+.......++ +....|++.++|-.-.+
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i~~---~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPYVP---EGLEAIIFTADGDMRQA 197 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHH
Confidence 999999999999998877654433333 56788889998876433
No 62
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=5.7e-07 Score=91.48 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=63.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc--cCHHHHHHHH-----HHHhCCCccccccccHHH
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD--LRLENIQETI-----GEKIGLLNDTWKNRRIEQ 247 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~~~~ 247 (890)
+....++|+|++|+|||||++++++.. .. .+|+.++|+.+.+. .+..++++.+ +.+++.+... ...-...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~ 90 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEM 90 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHH
Confidence 456789999999999999999999987 33 38999999997766 7899999998 3333321100 0001111
Q ss_pred HHHHHHHH-hccCcEEEEEeccC
Q 002700 248 KAQDIFRI-LKEKKFVLLLDDLW 269 (890)
Q Consensus 248 ~~~~l~~~-l~~kr~LlVlDdv~ 269 (890)
..+....+ -.++++++++|++.
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHH
Confidence 22222222 25799999999984
No 63
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.41 E-value=2e-06 Score=87.79 Aligned_cols=172 Identities=13% Similarity=0.118 Sum_probs=99.9
Q ss_pred Ccccch-HHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGL-QLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr-~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
+.++|- ...+..+.++........+.|+|++|+|||+|++++++... .....+.++.+.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh-------------
Confidence 344563 23344444444445557899999999999999999998862 2234455665532100
Q ss_pred CCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc---cccccc-ccCCCCCCCCC-cEEEEecCChh---------H
Q 002700 235 LLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR---VDLTKV-GVPLPGPQNNA-SKVVFTTRSEE---------V 300 (890)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l-~~~l~~~~~~g-s~IiiTtR~~~---------v 300 (890)
... .+.+.+.. --++++||+... ..|+.. ...+......| .++|+||+... +
T Consensus 87 ---------~~~----~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 ---------FVP----EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ---------hhH----HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 001 11111211 237899999532 233321 11111011123 47899987552 3
Q ss_pred hhcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 301 CGLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 301 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
.+.+....+++++++++++-.+++.+++.......+ ++...-|++.+.|..-++..+
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHH
Confidence 445556678999999999999999886654333333 367778888887766554433
No 64
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=4.6e-06 Score=94.08 Aligned_cols=184 Identities=19% Similarity=0.189 Sum_probs=110.1
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCC------------------CCCeEEEEEe
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPT------------------NFSCVIWVVV 216 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~ 216 (890)
..++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++...-... .|..++++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4689999999999999987654 45789999999999999999986521000 1111222221
Q ss_pred CCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH-hccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEE-
Q 002700 217 SKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRI-LKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVV- 292 (890)
Q Consensus 217 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Ii- 292 (890)
....... +..++.+.+... ..+++-++|+|++.. ....+.+...+. .....+.+|
T Consensus 96 as~~gvd--------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE-epp~~v~fIL 154 (546)
T PRK14957 96 ASRTGVE--------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE-EPPEYVKFIL 154 (546)
T ss_pred ccccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh-cCCCCceEEE
Confidence 1111111 112222222211 245677999999963 334555555554 333455555
Q ss_pred EecCChhHhhc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc-hHHHHHHHH
Q 002700 293 FTTRSEEVCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP-LALITVGRA 363 (890)
Q Consensus 293 iTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~g~~ 363 (890)
+||....+... ......+++.+++.++....+.+.+.......+ .+....|++.++|.+ .|+..+-..
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e---~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD---EQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45544444322 233468999999999998888876544332222 356678899999966 455555433
No 65
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=4.8e-06 Score=93.09 Aligned_cols=185 Identities=19% Similarity=0.212 Sum_probs=106.7
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCC--C-----------------CeEEEEE
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTN--F-----------------SCVIWVV 215 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~--f-----------------~~~~wv~ 215 (890)
..+||.+..++.+...+..+.. ..+.++|++|+||||+|+.+++... .... + ..+..+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~-~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN-CENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-cccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 4689999988888888877765 4689999999999999999988752 1110 0 0112222
Q ss_pred eCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEE
Q 002700 216 VSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVF 293 (890)
Q Consensus 216 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Iii 293 (890)
.+.......+ +.+.+.... ....+++-++|+|+++. ......+...+. .......+|+
T Consensus 93 aa~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE-~p~~~vv~Il 152 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLE-EPPSHVVFVL 152 (472)
T ss_pred CcccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHH-hCCCcEEEEE
Confidence 2111111111 111111100 01234667999999853 233444544443 2223344444
Q ss_pred ecCC-hhHhhc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC-cchHHHHHHHHh
Q 002700 294 TTRS-EEVCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGG-LPLALITVGRAM 364 (890)
Q Consensus 294 TtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~g~~l 364 (890)
+|.+ ..+... ......+.+.+++.++....+.+.+.......+ .+....|++.++| ++.|+..+-...
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4433 333222 123457899999999999998887754332222 2566778887764 467776665433
No 66
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.39 E-value=7.1e-08 Score=95.22 Aligned_cols=129 Identities=27% Similarity=0.435 Sum_probs=103.7
Q ss_pred ccCcccccEEeeeccccccccCC-CCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCCEE
Q 002700 512 VKGWANARRISLMDNQITNLSEI-PTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHL 590 (890)
Q Consensus 512 ~~~~~~~~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L 590 (890)
...|+.+..+++++|.+..+.+. .-.|++|.|+++.|.+..+.. +..+.+|..||||+|.++++-.--.+|-|.++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 34577889999999999888654 446899999999999877755 678899999999999888775444567889999
Q ss_pred EccCCCCCccchhhhcCCCCcEEecCccccccccch-hhhcCCcccccccccCcc
Q 002700 591 DLSESDISELPEELKALVNLKCLNLEWTRYLITIPR-QLVSNLSRLHVLRMFGAS 644 (890)
Q Consensus 591 ~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 644 (890)
+|++|.|..+ +.+++|.+|..||+++|+ +..+.. .-|++|+.|+++.+.+..
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 9999998887 468899999999999997 555532 127899999999887654
No 67
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.39 E-value=7e-06 Score=83.65 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=100.9
Q ss_pred HHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHH
Q 002700 168 VWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQ 247 (890)
Q Consensus 168 l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 247 (890)
|.+++..+...-+.+||++|+||||||+.+.... +.+- ..||..|-...-..-.++|.++..
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~aq------------- 214 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQAQ------------- 214 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHHH-------------
Confidence 4455566888999999999999999999999875 2221 556666544333333333433321
Q ss_pred HHHHHHHHhccCcEEEEEeccC--CcccccccccCCCCCCCCCcEEEE--ecCChhH---hhcccCCCcEeccCCChHHH
Q 002700 248 KAQDIFRILKEKKFVLLLDDLW--QRVDLTKVGVPLPGPQNNASKVVF--TTRSEEV---CGLMDAQKKFKVACLSDIDA 320 (890)
Q Consensus 248 ~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~~gs~Iii--TtR~~~v---~~~~~~~~~~~l~~L~~~ea 320 (890)
=...+.++|.+|.+|.|. +..+-+.+ +| .-.+|..++| ||.++.. +.....-.++.|++|+.++.
T Consensus 215 ----~~~~l~krkTilFiDEiHRFNksQQD~f---LP-~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 215 ----NEKSLTKRKTILFIDEIHRFNKSQQDTF---LP-HVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred ----HHHhhhcceeEEEeHHhhhhhhhhhhcc---cc-eeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 112346789999999995 33333333 44 4556787776 8887754 22334456899999999999
Q ss_pred HHHHHHHhc---Cccc--CCCh-----hHHHHHHHHHHHcCCcch
Q 002700 321 WELFRQKVG---EEAL--HSHP-----AILELAHTVAKECGGLPL 355 (890)
Q Consensus 321 ~~Lf~~~~~---~~~~--~~~~-----~~~~~~~~i~~~c~GlPL 355 (890)
..++.+... .... ..-+ -...+..-++..|+|-.-
T Consensus 287 ~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 287 VTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 999887432 2110 0111 123456666777777653
No 68
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=3.5e-07 Score=71.33 Aligned_cols=58 Identities=40% Similarity=0.573 Sum_probs=34.6
Q ss_pred CceEEEecccccccccchhhccCCcceEEEcCCCCccccC-hhccCccCCCEEEccCCC
Q 002700 539 HLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELP-VGIAQLVSLQHLDLSESD 596 (890)
Q Consensus 539 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~ 596 (890)
+|++|++.+|.+..+++..|..+++|++|++++|.++.+| ..+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4556666666666666656666666666666666666553 345556666666666554
No 69
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.38 E-value=3.7e-06 Score=81.90 Aligned_cols=171 Identities=17% Similarity=0.248 Sum_probs=90.4
Q ss_pred CcccchHHHHHHHHHHhh-----cCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLE-----EESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIG 230 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 230 (890)
.+|||.+.-++.+.-++. .+...-+.+||++|+||||||.-+++.. ...|. +.+.+.-....++ ..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHH
Confidence 578999988887655443 2357789999999999999999999987 34442 2222111111111 1111
Q ss_pred HHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCC--ccc-------ccc---------------cccCCCCCCC
Q 002700 231 EKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQ--RVD-------LTK---------------VGVPLPGPQN 286 (890)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~-------~~~---------------l~~~l~~~~~ 286 (890)
.. + +++-+|.+|++.. ..+ .++ +...+|
T Consensus 97 ~~-----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~---- 148 (233)
T PF05496_consen 97 TN-----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP---- 148 (233)
T ss_dssp HT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE------
T ss_pred Hh-----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC----
Confidence 11 1 2344666677642 111 010 111111
Q ss_pred CCcEEEEecCChhHhhcccCC--CcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHHHHh
Q 002700 287 NASKVVFTTRSEEVCGLMDAQ--KKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAM 364 (890)
Q Consensus 287 ~gs~IiiTtR~~~v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l 364 (890)
+=+-|=-|||...+...+... .+.+++..+.+|-.++..+.+..-....+ .+.+.+|+++|.|-|--..-+-...
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~---~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID---EDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHhcCCChHHHHHHHHHH
Confidence 112344588876665444333 24589999999999999887754432222 4789999999999997655444433
No 70
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.38 E-value=2.6e-06 Score=99.79 Aligned_cols=166 Identities=22% Similarity=0.306 Sum_probs=97.9
Q ss_pred CcccchHHHHH---HHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHH
Q 002700 156 PTVVGLQLQLE---QVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEK 232 (890)
Q Consensus 156 ~~~vGr~~~~~---~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 232 (890)
..|+|.+..+. .+.+.+..+....+.++|++|+||||+|+.+++.. ...|. .++.+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~--------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVK--------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhH---------
Confidence 35789888774 46666766777788999999999999999999876 33331 111110 0000
Q ss_pred hCCCccccccccHHHHHHHHHHHh--ccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEE--ecCChh--Hhh-c
Q 002700 233 IGLLNDTWKNRRIEQKAQDIFRIL--KEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVF--TTRSEE--VCG-L 303 (890)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Iii--TtR~~~--v~~-~ 303 (890)
+..+......+.+ .+++.+|||||++. ....+.+...+. .|+.++| ||.+.. +.. .
T Consensus 92 -----------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 92 -----------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE----NGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred -----------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc----CceEEEEEecCCChHhhhhhHh
Confidence 1111122222222 24678999999963 334444443332 3555555 444432 111 1
Q ss_pred ccCCCcEeccCCChHHHHHHHHHHhcC-------cccCCChhHHHHHHHHHHHcCCcch
Q 002700 304 MDAQKKFKVACLSDIDAWELFRQKVGE-------EALHSHPAILELAHTVAKECGGLPL 355 (890)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~-------~~~~~~~~~~~~~~~i~~~c~GlPL 355 (890)
......+.+++++.++...++.+.+.. .....+ .+....|++.+.|..-
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R 212 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDAR 212 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHH
Confidence 122457899999999999999876641 111122 3566778888887643
No 71
>PRK09087 hypothetical protein; Validated
Probab=98.37 E-value=5.1e-06 Score=83.88 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=87.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRI 255 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (890)
..+.+.|+|.+|+|||+|++.++... .. .+++.. .+...+.. .
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~~-------~~i~~~------~~~~~~~~-----------------------~ 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-DA-------LLIHPN------EIGSDAAN-----------------------A 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-CC-------EEecHH------HcchHHHH-----------------------h
Confidence 34679999999999999999988764 11 122211 11111111 1
Q ss_pred hccCcEEEEEeccCCcc-cccccccCCCCCCCCCcEEEEecCC---------hhHhhcccCCCcEeccCCChHHHHHHHH
Q 002700 256 LKEKKFVLLLDDLWQRV-DLTKVGVPLPGPQNNASKVVFTTRS---------EEVCGLMDAQKKFKVACLSDIDAWELFR 325 (890)
Q Consensus 256 l~~kr~LlVlDdv~~~~-~~~~l~~~l~~~~~~gs~IiiTtR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 325 (890)
+.+ -+|++||+.... +-+.+...+......|..||+|++. +.+.+.+....+++++++++++-.+++.
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 278889995321 1111222221112346778988873 3344455666889999999999999999
Q ss_pred HHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 326 QKVGEEALHSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
+++.......+ +++..-|++++.|..-++..+
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHH
Confidence 88865443333 367788888888777666543
No 72
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=9.4e-06 Score=91.09 Aligned_cols=193 Identities=14% Similarity=0.154 Sum_probs=109.5
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCe-EEEEEeCCccCHHHHHHHHHHHh
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSC-VIWVVVSKDLRLENIQETIGEKI 233 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l 233 (890)
.+++|-+..+..+...+..++. ..+.++|+.|+||||+|+.+++.. ........ --+..+... ..-..+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L-nc~~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV-NCSALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh-cCccccccCcCcCCCCCC----hHHHHHhcCC
Confidence 4579999999999888776654 578899999999999999999876 21111000 000000000 0000010000
Q ss_pred CCCc---cccccccHHHH---HHHHH-HHhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEE-ecCChhHhhc
Q 002700 234 GLLN---DTWKNRRIEQK---AQDIF-RILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVF-TTRSEEVCGL 303 (890)
Q Consensus 234 ~~~~---~~~~~~~~~~~---~~~l~-~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Iii-TtR~~~v~~~ 303 (890)
.... +.......++. .+... .-+.+++-++|+|+++. ...+..+...+. .....+.+|+ ||+...+...
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LE-epp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLE-EPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHh-hcCCCEEEEEEeCChHHhhHH
Confidence 0000 00001112222 21111 11245677999999974 345666666555 3344556554 5555555432
Q ss_pred c-cCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 304 M-DAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 304 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
. .....+.+.+++.++....+.+.+.......+ .+....|++.++|.+--+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2 23357899999999999999988865443222 255677999999877443
No 73
>PTZ00202 tuzin; Provisional
Probab=98.37 E-value=2e-05 Score=83.71 Aligned_cols=165 Identities=18% Similarity=0.164 Sum_probs=99.6
Q ss_pred cCCCCcccchHHHHHHHHHHhhc---CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHH
Q 002700 152 RPIEPTVVGLQLQLEQVWRCLEE---ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQET 228 (890)
Q Consensus 152 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 228 (890)
++..+.|+||+.+.+.+...|.+ +..+++.|+|++|+|||||++.+.... . + ..+.++.. +..++++.
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C----c-eEEEECCC---CHHHHHHH
Confidence 44457899999999999999864 235699999999999999999998765 1 1 13333322 67999999
Q ss_pred HHHHhCCCccccccccHHHHHHHHHHHh-c-cCcEEEEEeccCCccccccc---ccCCCCCCCCCcEEEEecCChhHhh-
Q 002700 229 IGEKIGLLNDTWKNRRIEQKAQDIFRIL-K-EKKFVLLLDDLWQRVDLTKV---GVPLPGPQNNASKVVFTTRSEEVCG- 302 (890)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~~~~~l---~~~l~~~~~~gs~IiiTtR~~~v~~- 302 (890)
++.+||.+.......-..++.+.+.+.- . +++.+||+-== +-.++..+ ...+. ....-|.|++----+.+.-
T Consensus 329 LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la-~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALA-CDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHH-ccchhheeeeeehHhhcchh
Confidence 9999997532211111233333333322 2 67778877321 11111111 01111 2334466666444333311
Q ss_pred --cccCCCcEeccCCChHHHHHHHHHH
Q 002700 303 --LMDAQKKFKVACLSDIDAWELFRQK 327 (890)
Q Consensus 303 --~~~~~~~~~l~~L~~~ea~~Lf~~~ 327 (890)
....-..|.++.++.++|.++-.+.
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhc
Confidence 1122346889999999998887664
No 74
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=9.7e-07 Score=81.54 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=78.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccC--CCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQR--PTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIF 253 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 253 (890)
+.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...++++++..... ..+..++.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 34689999999999999999999886210 00134677999988889999999999999876532 346677778888
Q ss_pred HHhccCc-EEEEEeccCCc---ccccccccCCCCCCCCCcEEEEecCC
Q 002700 254 RILKEKK-FVLLLDDLWQR---VDLTKVGVPLPGPQNNASKVVFTTRS 297 (890)
Q Consensus 254 ~~l~~kr-~LlVlDdv~~~---~~~~~l~~~l~~~~~~gs~IiiTtR~ 297 (890)
+.+...+ .+||+||++.- ..++.+.... ...+.+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~---~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLL---NESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT---CSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH---hCCCCeEEEEECh
Confidence 8886655 59999998542 2233333322 2556677776654
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=6.3e-06 Score=90.49 Aligned_cols=189 Identities=14% Similarity=0.107 Sum_probs=108.4
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
.++||.+..+..|..++..++.. .+.++|+.|+||||+|+.+++.. ......... .+.....- ..+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L-nce~~~~~~---pCg~C~sC----~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL-NCENPIGNE---PCNECTSC----LEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc-CcccccCcc---ccCCCcHH----HHHHccCC
Confidence 46899999999999999887754 58999999999999999999876 211100000 01111111 11111110
Q ss_pred CCc---c---ccccccHHHHHHHHHHH-hccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEE-ecCChhHhhc-
Q 002700 235 LLN---D---TWKNRRIEQKAQDIFRI-LKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVF-TTRSEEVCGL- 303 (890)
Q Consensus 235 ~~~---~---~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Iii-TtR~~~v~~~- 303 (890)
... + .....++.++.+.+... ..++.-++|+|+++. ...++.+...+. .......+|+ ||....+...
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLE-EPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLE-EPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhh-cCCCceEEEeecCChhhccHHH
Confidence 000 0 00011122222222211 245667999999963 345666655554 2233455454 4444444221
Q ss_pred ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchH
Q 002700 304 MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLA 356 (890)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 356 (890)
...-..|.+.+++.++..+.+.+.+.......+ .+....|++.++|.+.-
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHH
Confidence 223357999999999999998887654432222 35678899999998843
No 76
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.32 E-value=1.4e-07 Score=93.08 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=59.9
Q ss_pred CCcceEEEcCCCCccccChhccCccCCCEEEccCCCCCccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccc
Q 002700 561 MPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRM 640 (890)
Q Consensus 561 l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l 640 (890)
.+.|..||||+|.|+.+.+++.-++.++.|++++|.|..+-+ +..|.+|++|||++|. +..+. +.-.+|.+.++|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~-Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECV-GWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhh-hhHhhhcCEeeeeh
Confidence 356888888888888888888888888888888888887754 7888888888888886 45443 22346777777777
Q ss_pred cC
Q 002700 641 FG 642 (890)
Q Consensus 641 ~~ 642 (890)
.+
T Consensus 360 a~ 361 (490)
T KOG1259|consen 360 AQ 361 (490)
T ss_pred hh
Confidence 64
No 77
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=5.1e-06 Score=95.22 Aligned_cols=192 Identities=15% Similarity=0.123 Sum_probs=108.2
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
..+||.+..++.|.+.+..+++. .+.++|..|+||||+|+.+++... -...+.. ..+..-..-+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~-c~~~~~~-------~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN-CETGITA-------TPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh-hccCCCC-------CCCCCCHHHHHHHcCCC
Confidence 46899999999999999877654 468999999999999999988762 1110000 00000011111111000
Q ss_pred -----CCcc-ccccccHHHHHHHHHH-HhccCcEEEEEeccC--CcccccccccCCCCCCCCCcEEEE-ecCChhHhh-c
Q 002700 235 -----LLND-TWKNRRIEQKAQDIFR-ILKEKKFVLLLDDLW--QRVDLTKVGVPLPGPQNNASKVVF-TTRSEEVCG-L 303 (890)
Q Consensus 235 -----~~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~~gs~Iii-TtR~~~v~~-~ 303 (890)
+... ...-.++.++...+.. -..+++-++|+|+++ +....+.+...+. ......++|+ ||....+.. .
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE-EPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH-cCCCCeEEEEecCCccccchHH
Confidence 0000 0000111222222211 124677799999996 3344555555554 2333455555 444444432 2
Q ss_pred ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHH
Q 002700 304 MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALIT 359 (890)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 359 (890)
...-..|.+.+++.++....+.+.+.......+ .+....|++.++|.+--+..
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALS 219 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 223468999999999999999887643332222 25567899999998864433
No 78
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.32 E-value=1.2e-06 Score=86.37 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=32.6
Q ss_pred cccchHHHHHHHHHHhh---cCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 157 TVVGLQLQLEQVWRCLE---EESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.||||+++++++...+. ....+.+.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999993 2467899999999999999999999987
No 79
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=8.3e-06 Score=92.06 Aligned_cols=195 Identities=13% Similarity=0.110 Sum_probs=106.9
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
..++|++..++.+.+.+..++. ..+.++|+.|+||||+|+.+++... -.. |.... .++.-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~------~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN------PKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCC------CCCCC-CCcccHHHHHHHcCCC
Confidence 4689999999999999877654 4788999999999999999988762 111 11000 0000011111111000
Q ss_pred CCc---cccccccHH---HHHHHHHH-HhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEec-CChhHhh-c
Q 002700 235 LLN---DTWKNRRIE---QKAQDIFR-ILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTT-RSEEVCG-L 303 (890)
Q Consensus 235 ~~~---~~~~~~~~~---~~~~~l~~-~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTt-R~~~v~~-~ 303 (890)
... +.......+ +....+.. -..+++-++|+|+++. ...+..+...+. ....+..+|++| ....+.. .
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLE-EPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLE-EPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHH-hCCCcEEEEEECCChHhhhHHH
Confidence 000 000001111 11111111 0123445799999853 334555555544 223345555444 4434422 1
Q ss_pred ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcch-HHHHHHH
Q 002700 304 MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPL-ALITVGR 362 (890)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~ 362 (890)
......+++.++++++....+...+.......+ .+.+..+++.++|.+- |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 233468899999999999998887654332222 2557788999999664 4444443
No 80
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=1.7e-05 Score=86.58 Aligned_cols=172 Identities=11% Similarity=0.061 Sum_probs=102.4
Q ss_pred CcccchHHHHHHHHHHhhcCC----------eeEEEEEcCCCChHHHHHHHHHhhhccCC------------------CC
Q 002700 156 PTVVGLQLQLEQVWRCLEEES----------VGIVGLYGMGGVGKTTLLTHINNKFLQRP------------------TN 207 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~----------~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~ 207 (890)
+.++|.+..++.+.+.+..+. ..-+.++|++|+|||++|+.++....-.. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 468999999999999997653 45688999999999999999987651100 01
Q ss_pred CCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHh-----ccCcEEEEEeccCC--cccccccccC
Q 002700 208 FSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL-----KEKKFVLLLDDLWQ--RVDLTKVGVP 280 (890)
Q Consensus 208 f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~ 280 (890)
.| +.++.... ....+++.. .+.+.+ .+++-++|+|+++. ......+...
T Consensus 85 pD-~~~i~~~~----------------------~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 85 PD-VRVVAPEG----------------------LSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CC-EEEecccc----------------------ccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 11 11111100 011122211 122222 24556888899963 2333444444
Q ss_pred CCCCCCCCcEEEEecCCh-hHhhc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHH
Q 002700 281 LPGPQNNASKVVFTTRSE-EVCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALI 358 (890)
Q Consensus 281 l~~~~~~gs~IiiTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 358 (890)
+. ....+..+|++|.+. .+... ...-..+.+.+++.++..+.+....+ .+ .+.+..+++.++|.|....
T Consensus 141 LE-ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 141 VE-EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD---PETARRAARASQGHIGRAR 211 (394)
T ss_pred hh-cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 43 333456566655554 33322 22346889999999999988875432 11 2457788999999997654
Q ss_pred HH
Q 002700 359 TV 360 (890)
Q Consensus 359 ~~ 360 (890)
.+
T Consensus 212 ~l 213 (394)
T PRK07940 212 RL 213 (394)
T ss_pred HH
Confidence 44
No 81
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=2.6e-05 Score=84.41 Aligned_cols=196 Identities=10% Similarity=0.046 Sum_probs=109.4
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCC-CCCCe-EEEEEeCCccCHHHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRP-TNFSC-VIWVVVSKDLRLENIQETIGEK 232 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~-~~wv~~s~~~~~~~~~~~i~~~ 232 (890)
..++|.+..++.+.+.+..++.. .+.++|+.|+||+|+|..+.+...-.. ..... ..-...-.....-..-+.+...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 56899999999999999887655 688999999999999999888762111 00000 0000000000000011111110
Q ss_pred hCCCc---------ccc----ccccHHHHHHHHHHHh-----ccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEE
Q 002700 233 IGLLN---------DTW----KNRRIEQKAQDIFRIL-----KEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVV 292 (890)
Q Consensus 233 l~~~~---------~~~----~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Ii 292 (890)
- -++ +.. ..-.+++ +..+.+.+ .+++.++|+||++. ......+...+. ....++.+|
T Consensus 99 ~-HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE-epp~~~~~I 175 (365)
T PRK07471 99 A-HGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE-EPPARSLFL 175 (365)
T ss_pred C-CCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh-cCCCCeEEE
Confidence 0 000 000 0112233 23333333 24677999999953 334445544444 333456666
Q ss_pred EecCChh-Hhh-cccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 002700 293 FTTRSEE-VCG-LMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVG 361 (890)
Q Consensus 293 iTtR~~~-v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 361 (890)
++|.+.. +.. ....-..+.+.+++.++..+++.+..... .+ +....+++.++|.|.....+.
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~----~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL----PD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC----CH---HHHHHHHHHcCCCHHHHHHHh
Confidence 6666553 321 12234688999999999999998764321 11 222678999999998665543
No 82
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.27 E-value=2.5e-05 Score=85.92 Aligned_cols=181 Identities=12% Similarity=0.167 Sum_probs=108.0
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccC-CC------------------CCCeEEEEE
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQR-PT------------------NFSCVIWVV 215 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~------------------~f~~~~wv~ 215 (890)
..++|.+..++.+.+.+..+.. ..+.++|++|+||||+|+.+....... .. +++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 4589999999999999987654 467899999999999999998875210 00 1221 2222
Q ss_pred eCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEE
Q 002700 216 VSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVF 293 (890)
Q Consensus 216 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Iii 293 (890)
.+....... .+.+.+.+... -..+++-++|+|++.. ......+...+. .....+.+|+
T Consensus 93 ~~~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le-~~~~~~~lIl 152 (355)
T TIGR02397 93 AASNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLE-EPPEHVVFIL 152 (355)
T ss_pred ccccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHh-CCccceeEEE
Confidence 211111111 11122211100 0124556889999853 233444544443 3334566666
Q ss_pred ecCChh-Hhhc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 294 TTRSEE-VCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 294 TtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
+|.+.. +... ......+++.++++++..+.+...+.......+ .+.+..+++.++|.|..+...
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHH
Confidence 665543 2221 123357889999999999998887654432222 367788899999988655443
No 83
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=9e-06 Score=92.72 Aligned_cols=178 Identities=13% Similarity=0.143 Sum_probs=105.5
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCCC-------------------CeEEEEE
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTNF-------------------SCVIWVV 215 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f-------------------~~~~wv~ 215 (890)
.++||.+..++.|.+++..++. ..+.++|..|+||||+|+.+.+.. ...... .-++.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L-nC~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL-NCENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh-cccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 4689999999999999987764 468999999999999999998875 111110 0011111
Q ss_pred eCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH-HhccCcEEEEEeccCCc--ccccccccCCCCCCCCCcEEE
Q 002700 216 VSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR-ILKEKKFVLLLDDLWQR--VDLTKVGVPLPGPQNNASKVV 292 (890)
Q Consensus 216 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Ii 292 (890)
....... .++.++...... -..+++-++|+|++..- .....+...+. .....+++|
T Consensus 95 aAs~~gV--------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLE-EPp~~v~fI 153 (709)
T PRK08691 95 AASNTGI--------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFI 153 (709)
T ss_pred ccccCCH--------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHH-hCCCCcEEE
Confidence 1111111 011111111110 12356679999999632 22334444443 223355666
Q ss_pred EecCCh-hHhhc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHH
Q 002700 293 FTTRSE-EVCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALI 358 (890)
Q Consensus 293 iTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 358 (890)
++|.+. .+... .+.-..+.+.+++.++....+.+.+.......+ .+....|++.++|.+.-+.
T Consensus 154 LaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 154 LATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHH
Confidence 666443 22211 122346788999999999999887765443332 2567889999999885443
No 84
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.2e-05 Score=90.85 Aligned_cols=178 Identities=16% Similarity=0.177 Sum_probs=106.4
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCC-------------------CCeEEEEE
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTN-------------------FSCVIWVV 215 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 215 (890)
.++||-+..++.+.+++..++.. .+.++|+.|+||||+|+.+++.. .-... |.-++.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL-NCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh-cCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 46899999999999999877655 57899999999999999998876 21111 11122222
Q ss_pred eCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEE
Q 002700 216 VSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVF 293 (890)
Q Consensus 216 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Iii 293 (890)
.+......++ +.+++.+.. .-..++.-++|+|+|+. ......+...+. .....+++|+
T Consensus 95 aas~~~v~~i-R~l~~~~~~------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LE-epp~~~~fIl 154 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPY------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLE-EPPSHVKFIL 154 (509)
T ss_pred ccccCCHHHH-HHHHHHHhh------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHh-ccCCCeEEEE
Confidence 2222222221 112221111 01135667899999963 344555555554 3334566665
Q ss_pred ecCCh-hHhh-cccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 294 TTRSE-EVCG-LMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 294 TtR~~-~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
+|.+. .+.. .......+++++++.++....+.+.+.......+ .+....|++.++|.+.-+
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDA 217 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHH
Confidence 55433 3321 1123357889999999988887776654432222 245678888999887544
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.5e-05 Score=88.63 Aligned_cols=179 Identities=16% Similarity=0.164 Sum_probs=109.3
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccC-C-----------------CCCCeEEEEEe
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQR-P-----------------TNFSCVIWVVV 216 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~-~-----------------~~f~~~~wv~~ 216 (890)
.++||.+..++.+.+.+..++.. .+.++|+.|+||||+|+.++....-. . ..+.-++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 46899999999998888877665 78999999999999999998753100 0 01112233333
Q ss_pred CCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEe
Q 002700 217 SKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFT 294 (890)
Q Consensus 217 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiT 294 (890)
+......++ +.+++.... .-..+++-++|+|++.. ....+.+...+. .....+++|++
T Consensus 93 as~~~vddI-R~Iie~~~~------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LE-ePp~~v~fIla 152 (491)
T PRK14964 93 ASNTSVDDI-KVILENSCY------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLE-EPAPHVKFILA 152 (491)
T ss_pred ccCCCHHHH-HHHHHHHHh------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHh-CCCCCeEEEEE
Confidence 322222221 112111110 00134666899999953 334555555554 33345666655
Q ss_pred c-CChhHhhc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 295 T-RSEEVCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 295 t-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
| ....+... ......+.+.+++.++....+.+.+.......+ .+....|++.++|.+-.+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 4 44444322 233467899999999999999888765443333 256778999999887543
No 86
>PRK05642 DNA replication initiation factor; Validated
Probab=98.25 E-value=1.2e-05 Score=82.10 Aligned_cols=151 Identities=17% Similarity=0.257 Sum_probs=90.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL 256 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 256 (890)
...+.|+|..|+|||.|++++++... ..-..++|++..+ +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 36789999999999999999998762 2224566665421 1110 01222333
Q ss_pred ccCcEEEEEeccCC---cccccc-cccCCCCCCCCCcEEEEecCChhH---------hhcccCCCcEeccCCChHHHHHH
Q 002700 257 KEKKFVLLLDDLWQ---RVDLTK-VGVPLPGPQNNASKVVFTTRSEEV---------CGLMDAQKKFKVACLSDIDAWEL 323 (890)
Q Consensus 257 ~~kr~LlVlDdv~~---~~~~~~-l~~~l~~~~~~gs~IiiTtR~~~v---------~~~~~~~~~~~l~~L~~~ea~~L 323 (890)
.+-. +||+||+.. ...|.. +...+......|..||+|++...- .+.+....+++++++++++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3222 688999952 223332 222222112346778888875432 22333456789999999999999
Q ss_pred HHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 324 FRQKVGEEALHSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 324 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
+..++.......+ .+...-|++++.|..-++..+
T Consensus 175 l~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 175 LQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 9866644332222 367778888887776555443
No 87
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.25 E-value=6.3e-06 Score=84.19 Aligned_cols=169 Identities=12% Similarity=0.090 Sum_probs=94.7
Q ss_pred cchHHHH-HHHHHHhhc-CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCC
Q 002700 159 VGLQLQL-EQVWRCLEE-ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLL 236 (890)
Q Consensus 159 vGr~~~~-~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 236 (890)
.|..... ..+.++... ...+.+.|+|.+|+|||+||+++++.... .. ..+.+++...... . +
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~-~~~~~i~~~~~~~------~----~--- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY--GG-RNARYLDAASPLL------A----F--- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEehHHhHH------H----H---
Confidence 3554433 334343332 34568899999999999999999987521 12 2344444322110 0 0
Q ss_pred ccccccccHHHHHHHHHHHhccCcEEEEEeccCCcc--cccccccCCCCCCCCCc-EEEEecCChhHhh--------ccc
Q 002700 237 NDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRV--DLTKVGVPLPGPQNNAS-KVVFTTRSEEVCG--------LMD 305 (890)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~~gs-~IiiTtR~~~v~~--------~~~ 305 (890)
... ...-+||+||+..-. ....+...+......+. .||+|++...... .+.
T Consensus 86 -----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 011 223478999995321 11222222221112344 4667766543221 222
Q ss_pred CCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHHHHh
Q 002700 306 AQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAM 364 (890)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l 364 (890)
....+.++++++++-..++.+.+.......+ .+....+++.+.|.+..+..+-..+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3468899999998877777665433322333 3577888888999998877665544
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.1e-05 Score=90.16 Aligned_cols=194 Identities=14% Similarity=0.140 Sum_probs=108.0
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCC--CCeEEEEEeCCccCHHHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTN--FSCVIWVVVSKDLRLENIQETIGEK 232 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i~~~ 232 (890)
.++||-+..++.|.+++..++. ..+.++|..|+||||+|+.+.+... -... ..+.-.- .++.-..-+.|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln-C~~~~~~~~~~~~----pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN-CQGPDGQGGITAT----PCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCcccccCCCCC----CCCccHHHHHHHcC
Confidence 4689999999999999987765 4678999999999999999977751 1100 0000000 00000111111000
Q ss_pred hCCC---ccccccccHHHHHHHHHHHh-----ccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEec-CChhHh
Q 002700 233 IGLL---NDTWKNRRIEQKAQDIFRIL-----KEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTT-RSEEVC 301 (890)
Q Consensus 233 l~~~---~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTt-R~~~v~ 301 (890)
-... -+......+++..+.+ +.. .++.-++|||+|+. ...+..+...+. ......++|++| ....+.
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli-~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE-EPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLL-EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE-EPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CCCceeecCcccccCHHHHHHHH-HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc-cCCCCeEEEEEECCchhhh
Confidence 0000 0000011122221111 111 24556899999963 344555666554 333455555544 434432
Q ss_pred -hcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHH
Q 002700 302 -GLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALIT 359 (890)
Q Consensus 302 -~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 359 (890)
........+.+++++.++....+.+.+.......+ .+....|++.++|.+--+..
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 22233468999999999999999887765443332 25678888999988754433
No 89
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=3.7e-07 Score=95.28 Aligned_cols=126 Identities=23% Similarity=0.272 Sum_probs=76.5
Q ss_pred CcccccEEeeecccccccc---CCCCCCCceEEEeccccccccc--chhhccCCcceEEEcCCCCccccChh--ccCccC
Q 002700 514 GWANARRISLMDNQITNLS---EIPTCPHLLTLFLNKNKLQMIH--NDFFQFMPSLKVLNLSHAELTELPVG--IAQLVS 586 (890)
Q Consensus 514 ~~~~~~~l~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~Lr~L~l~~~~l~~lp~~--i~~l~~ 586 (890)
.+++++.+++.++.....+ -...|++++.|+++.|-+..+. ..+...+++|+.|+++.|.+....++ -..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3456777777666655443 2456788888888877654433 23456778888888888766543222 235677
Q ss_pred CCEEEccCCCCC--ccchhhhcCCCCcEEecCcccccc--ccchhhhcCCcccccccccC
Q 002700 587 LQHLDLSESDIS--ELPEELKALVNLKCLNLEWTRYLI--TIPRQLVSNLSRLHVLRMFG 642 (890)
Q Consensus 587 L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~--~lp~~~i~~l~~L~~L~l~~ 642 (890)
|+.|.|+.|.++ .+-.....+++|+.|+|..|..+. ..+ ..-++.|+.|++++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLSN 255 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhccccC
Confidence 888888888776 222334456777777777774221 122 23455666676664
No 90
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=1.4e-05 Score=85.98 Aligned_cols=197 Identities=13% Similarity=0.118 Sum_probs=110.7
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCC-CCCCeEEEEEeCCccCHHHHHHHHHHHh
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRP-TNFSCVIWVVVSKDLRLENIQETIGEKI 233 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l 233 (890)
..++|.++..+.+...+..++. ..+.|+|..|+||||+|..+.+...... ..+.... ...........+.+...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHHcCC
Confidence 5689999999999999987754 4689999999999999999988862100 0011110 001111111222222220
Q ss_pred -------CCCcccc-----ccccHHHHHHHHHHHh-----ccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEe
Q 002700 234 -------GLLNDTW-----KNRRIEQKAQDIFRIL-----KEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFT 294 (890)
Q Consensus 234 -------~~~~~~~-----~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiT 294 (890)
..+.+.. ..-.+++. ..+.+++ .+++-++|+|+++. ....+.+...+.+......-|++|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 0000000 01123332 2344444 34677999999963 333444444443222233344555
Q ss_pred cCChhHhhcc-cCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 002700 295 TRSEEVCGLM-DAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVG 361 (890)
Q Consensus 295 tR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 361 (890)
++...+.... ..-..+.+.+++.++..+++.+...... .+ .+....+++.++|.|.....+.
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~---~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SD---GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 5543332211 2235899999999999999987432111 11 2456789999999998665443
No 91
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.6e-08 Score=96.04 Aligned_cols=184 Identities=23% Similarity=0.184 Sum_probs=100.4
Q ss_pred cCCCEEEccCCCCC--ccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccCccccccccccccchhhhhhH
Q 002700 585 VSLQHLDLSESDIS--ELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVV 662 (890)
Q Consensus 585 ~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 662 (890)
..|++|||+.+.|+ ++---++.+.+|+.|.|.+...-..+... |.+=.+|+.|+++.|+.-.. +..-
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~----------n~~~ 253 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE----------NALQ 253 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch----------hHHH
Confidence 34788888887776 44445667778888888777632333322 56667777777777653110 0011
Q ss_pred HhhcCCCCCceEEEEecChhhHHhhhccccccccceeeeecccCCCCcee---ecccccccccceEeccccCCcceeEec
Q 002700 663 EELLGLKYLEVISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKDTTFLE---ISALADLKQLNELRISECKKLEELKID 739 (890)
Q Consensus 663 ~~L~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~---l~~l~~l~~L~~L~l~~~~~l~~l~~~ 739 (890)
--+.+++ .|..|+++||....... +..++ ++|+.|+++||..- +..+
T Consensus 254 ll~~scs--------------------------~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrn--l~~s 303 (419)
T KOG2120|consen 254 LLLSSCS--------------------------RLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRN--LQKS 303 (419)
T ss_pred HHHHhhh--------------------------hHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhh--hhhh
Confidence 1123334 44445555543322110 01122 56777777776421 1111
Q ss_pred CCCccccccCCCceEEEEecCCCCCCC--CcccCCCCccEEeeccccccchhcccCcccccccccCCCCCCCcccEEecC
Q 002700 740 YPGVVQRFVFHGLKKVDIVKCNKLKDL--TFLAFAPNLKSIEVLGCVAMEEIVSVGKFAAVPEVTANLNPFAKLQNLKFF 817 (890)
Q Consensus 740 ~~~~~~~~~~~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~l~ 817 (890)
... .-....++|.+|+|++|..+++- ..+-.++.|++|.++.|..+.- +....++..|+|.+|++.
T Consensus 304 h~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p-----------~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 304 HLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIP-----------ETLLELNSKPSLVYLDVF 371 (419)
T ss_pred HHH-HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCCh-----------HHeeeeccCcceEEEEec
Confidence 110 00123677888888887776651 1245678888888888865321 111245667888888887
Q ss_pred Cccc
Q 002700 818 GVIN 821 (890)
Q Consensus 818 ~~~~ 821 (890)
+|-.
T Consensus 372 g~vs 375 (419)
T KOG2120|consen 372 GCVS 375 (419)
T ss_pred cccC
Confidence 7644
No 92
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.20 E-value=1.5e-06 Score=91.28 Aligned_cols=291 Identities=18% Similarity=0.196 Sum_probs=178.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCC-CeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNF-SCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR 254 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (890)
..+.+.++|.|||||||++-.+.. . ...| +.+.++....-.+...+.-.+...++.+.. +-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHH
Confidence 457899999999999999999988 4 3445 567777777777777777777777776542 12233446667
Q ss_pred HhccCcEEEEEeccCCccc-ccccccCCCCCCCCCcEEEEecCChhHhhcccCCCcEeccCCChH-HHHHHHHHHhcCcc
Q 002700 255 ILKEKKFVLLLDDLWQRVD-LTKVGVPLPGPQNNASKVVFTTRSEEVCGLMDAQKKFKVACLSDI-DAWELFRQKVGEEA 332 (890)
Q Consensus 255 ~l~~kr~LlVlDdv~~~~~-~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~~~ 332 (890)
+..++|.++|+||..+-.+ -..+...+- .+...-.|+.|+|.... ......+.+++|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all-~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALL-GACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHH-ccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 7789999999999632211 011111111 23334567888887543 244567788888865 79999887664221
Q ss_pred --cCCChhHHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHH---HHHHHHHHhccccccCCCccchhhhhhhhcCCCCC
Q 002700 333 --LHSHPAILELAHTVAKECGGLPLALITVGRAMACKKTPEE---WRYAIQVLRTSSSQFAGLGNEVYPLLRFSYDNLPN 407 (890)
Q Consensus 333 --~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~---w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 407 (890)
..-.........+|.++.+|.|++|...++..+.-...+- ..+-...+........--+......+.+||.-|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 1112223467889999999999999999887765322111 11111111111000000123567889999999988
Q ss_pred cchhhHHhhhccCCCCceecHHHHHHHHHHcCCCCCccccchhhhHHHHHHHHHhhhccccc---CcCeEEEehhHHHHH
Q 002700 408 DTIRSCLLYCSLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQGYHILGILLHVCLLEEG---GDGEVKMHDVVRDMA 484 (890)
Q Consensus 408 ~~~k~cfl~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a 484 (890)
-.+.-|.-++.|...+... ...|.+-|-... .........+..+++.+++... ..-.|+.-+-++.|+
T Consensus 240 -we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred -HHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6888888888888776544 344555443211 1223444456677788876542 233455555566666
Q ss_pred HHHH
Q 002700 485 LWIA 488 (890)
Q Consensus 485 ~~i~ 488 (890)
...-
T Consensus 311 laeL 314 (414)
T COG3903 311 LAEL 314 (414)
T ss_pred HHHH
Confidence 5544
No 93
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=1.9e-05 Score=87.42 Aligned_cols=196 Identities=11% Similarity=0.106 Sum_probs=108.2
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEE-eCCccCHHHHHHHHHHHh
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVV-VSKDLRLENIQETIGEKI 233 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 233 (890)
..++|.+..++.+.+++..+++. .+.++|+.|+||||+|+.+++... -...++...|.. +......=..-+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 46899999999999999877665 488999999999999999988762 111111000000 000000000011111100
Q ss_pred CCCcccc---ccccHHHHHHHHHHHh-----ccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEec-CChhHhh
Q 002700 234 GLLNDTW---KNRRIEQKAQDIFRIL-----KEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTT-RSEEVCG 302 (890)
Q Consensus 234 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTt-R~~~v~~ 302 (890)
....... .....++..+ +.+.+ .+++-++|+|++.. ...++.+...+. .....+.+|++| +...+..
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE-ep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE-EPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHHhHH
Confidence 0000000 0111222221 22222 34566889999863 334556655554 334456665554 4444432
Q ss_pred cc-cCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 303 LM-DAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 303 ~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
.. .....+++.++++++..+.+...+.......+ .+.+..|++.++|.+--+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 21 22357889999999999888877643322222 367889999999977533
No 94
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.2e-05 Score=89.20 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=110.2
Q ss_pred CcccchHHHHHHHHHHhhcCC-eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEES-VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
.+++|.+..++.|.+.+..++ ...+.++|+.|+||||+|+.+++... -....+.. .++.-..-+.+.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~~-------pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTGE-------PCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCCC-------CCcccHHHHHHhcCCC
Confidence 468999999899998887765 46788899999999999999988762 11110000 0000000111111000
Q ss_pred CCcccc---ccccHHHHHHHHHHH-----hccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCC-hhHhhc
Q 002700 235 LLNDTW---KNRRIEQKAQDIFRI-----LKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRS-EEVCGL 303 (890)
Q Consensus 235 ~~~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~-~~v~~~ 303 (890)
...-.. ....+++. ..+.+. ..+++-++|+|++.. ......+...+. .......+|++|.+ ..+...
T Consensus 88 pDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LE-EP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 VDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLE-EPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhh-ccCCCEEEEEecCChhhhhHH
Confidence 000000 00111111 112221 235677999999953 334555555554 22234555555544 444322
Q ss_pred -ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc-hHHHHHHHHh
Q 002700 304 -MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP-LALITVGRAM 364 (890)
Q Consensus 304 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~g~~l 364 (890)
......+++++++.++....+...+.......+ .+.+..|++.++|.+ .|+..+...+
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 122357899999999999998886654432232 356788899999965 6777776544
No 95
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.18 E-value=1.3e-05 Score=88.07 Aligned_cols=171 Identities=19% Similarity=0.259 Sum_probs=98.4
Q ss_pred CcccchHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCH
Q 002700 156 PTVVGLQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRL 222 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 222 (890)
..+.|+++.+++|.+.+.. ...+-|.++|++|+|||++|+++++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 4689999999999887642 124569999999999999999999986 3333 22211
Q ss_pred HHHHHHHHHHhCCCccccccccHHHHHHHHHHHh-ccCcEEEEEeccCCcc----------------cccccccCCCC-C
Q 002700 223 ENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL-KEKKFVLLLDDLWQRV----------------DLTKVGVPLPG-P 284 (890)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~-~ 284 (890)
..+.... .+ . .......+.+.. ...+.+|++||++.-. .+..+...+.. .
T Consensus 190 ~~l~~~~---~g--------~-~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG--------E-GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh--------H-HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 0 011112222222 3467899999986310 01111111110 1
Q ss_pred CCCCcEEEEecCChhH-----hhcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc
Q 002700 285 QNNASKVVFTTRSEEV-----CGLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP 354 (890)
Q Consensus 285 ~~~gs~IiiTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 354 (890)
...+.+||.||..... ......+..+.++..+.++..++|..++.......+.+ ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 2346778888875432 22112345789999999999999998875543222222 356677777764
No 96
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.18 E-value=4.4e-05 Score=75.37 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=92.1
Q ss_pred HHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCC-------------------CCCCeEEEEEeC-CccCHHHH
Q 002700 167 QVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRP-------------------TNFSCVIWVVVS-KDLRLENI 225 (890)
Q Consensus 167 ~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~s-~~~~~~~~ 225 (890)
.+.+.+..++. ..+.++|+.|+||||+|+.+.+...... .+.|. .++... .....+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 45566656655 5789999999999999999988862110 11111 111111 1111111
Q ss_pred HHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCCh-hHhh
Q 002700 226 QETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRSE-EVCG 302 (890)
Q Consensus 226 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~~-~v~~ 302 (890)
.+++.+.+... -..+.+-++|+||+.. ....+.+...+. .....+.+|++|++. .+..
T Consensus 81 i~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 81 VRELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLE-EPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhChH
Confidence 11111111100 0134567899999853 233555555554 334456666666544 2221
Q ss_pred c-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchH
Q 002700 303 L-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLA 356 (890)
Q Consensus 303 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 356 (890)
. ......+.+.+++.++..+.+.+. + .+ .+.+..|++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g-----i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G-----IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C-----CC---HHHHHHHHHHcCCCccc
Confidence 1 123358999999999999988776 2 11 35688999999998853
No 97
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2.4e-05 Score=89.87 Aligned_cols=195 Identities=13% Similarity=0.114 Sum_probs=109.3
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCCC-C-eEEEEEeCCccCHHHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTNF-S-CVIWVVVSKDLRLENIQETIGEK 232 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~-~~~wv~~s~~~~~~~~~~~i~~~ 232 (890)
.+++|.+..++.+.+.+..++.. -+.++|+.|+||||+|+.+++... -.... . ...+-.++.. .--+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~~cg~c----~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTIDLCGVG----EHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccccCccc----HHHHHHhcC
Confidence 46899999999999999877654 688999999999999999988762 11100 0 0000000000 000111111
Q ss_pred hCCCc---cccccccHHH---HHHHHHH-HhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEE-ecCChhHhh
Q 002700 233 IGLLN---DTWKNRRIEQ---KAQDIFR-ILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVF-TTRSEEVCG 302 (890)
Q Consensus 233 l~~~~---~~~~~~~~~~---~~~~l~~-~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Iii-TtR~~~v~~ 302 (890)
-.... +......+++ +++.++. -..+++-++|+|++.. ....+.+...+. ....++.+|+ ||....+..
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLE-ePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHH-hCCCCeEEEEEeCChhhhhH
Confidence 00000 0000111222 2222111 1134566899999853 334555555554 3334566655 544444432
Q ss_pred cc-cCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHH
Q 002700 303 LM-DAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALIT 359 (890)
Q Consensus 303 ~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 359 (890)
.+ .....+.+.+++.++....+.+.+.......++ +....|++.++|.+.-+..
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~---eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVED---EALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 21 234578999999999999998877544322322 5678889999998865543
No 98
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.1e-05 Score=89.75 Aligned_cols=183 Identities=15% Similarity=0.167 Sum_probs=106.6
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCC-------------------CCCeEEEEE
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPT-------------------NFSCVIWVV 215 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 215 (890)
.++||.+..++.+.+++..++.. .+.++|+.|+||||+|+.+.+... -.. .|.-++++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN-CETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 46899999999999999876654 568999999999999999988761 110 011112222
Q ss_pred eCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc--ccccccccCCCCCCCCCcEEEE
Q 002700 216 VSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR--VDLTKVGVPLPGPQNNASKVVF 293 (890)
Q Consensus 216 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Iii 293 (890)
.+....... .+.+++.... .-..+++-++|+|+++.- .....+...+. .....+.+|+
T Consensus 95 ~~~~~~vd~-ir~l~~~~~~------------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LE-epp~~~~fIL 154 (527)
T PRK14969 95 AASNTQVDA-MRELLDNAQY------------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFIL 154 (527)
T ss_pred ccccCCHHH-HHHHHHHHhh------------------CcccCCceEEEEcCcccCCHHHHHHHHHHHh-CCCCCEEEEE
Confidence 111111111 1111111110 011356779999999632 33444555554 3334555555
Q ss_pred ecCC-hhHhhc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcch-HHHHHHH
Q 002700 294 TTRS-EEVCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPL-ALITVGR 362 (890)
Q Consensus 294 TtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~ 362 (890)
+|.+ ..+... ......+++.+++.++....+.+.+.......+ .+....|++.++|.+- |+..+..
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5543 333211 122357899999999999888877654332222 2556888999999775 4444433
No 99
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.17 E-value=4.2e-06 Score=88.59 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=64.9
Q ss_pred HHHHhhc-CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc--CHHHHHHHHHHHhCCCcccccccc
Q 002700 168 VWRCLEE-ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDL--RLENIQETIGEKIGLLNDTWKNRR 244 (890)
Q Consensus 168 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 244 (890)
+++.+.. +.....+|+|++|+||||||+++|+.. .. .+|+.++||.+.+.. +..++++.+...+-... .+...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~~ 234 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPA 234 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCCH
Confidence 4444443 455688999999999999999999997 33 489999999998887 67788888763221111 01111
Q ss_pred HH-----HHHHHHHHH--hccCcEEEEEeccC
Q 002700 245 IE-----QKAQDIFRI--LKEKKFVLLLDDLW 269 (890)
Q Consensus 245 ~~-----~~~~~l~~~--l~~kr~LlVlDdv~ 269 (890)
.. ..+-...++ -.+++++|++|++.
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 11 111112222 26799999999984
No 100
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3e-05 Score=88.53 Aligned_cols=198 Identities=14% Similarity=0.126 Sum_probs=110.4
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
.++||.+..++.|.+++..+++. .+.++|+.|+||||+|+.+++... -....+. -.++.. ..-+.+...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~---~pCg~C----~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN-CAQGPTA---TPCGVC----ESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-cccCCCC---Cccccc----HHHHHhhcccC
Confidence 46899999999999999887655 468999999999999999998762 1110000 000000 00001100000
Q ss_pred CCc-----cccccccHH---HHHHHHHHH-hccCcEEEEEeccC--CcccccccccCCCCCCCCCcEEEE-ecCChhHhh
Q 002700 235 LLN-----DTWKNRRIE---QKAQDIFRI-LKEKKFVLLLDDLW--QRVDLTKVGVPLPGPQNNASKVVF-TTRSEEVCG 302 (890)
Q Consensus 235 ~~~-----~~~~~~~~~---~~~~~l~~~-l~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~~gs~Iii-TtR~~~v~~ 302 (890)
... +......++ ++.+.+... ..+++-++|+|++. +....+.+...+. .......+|+ ||....+..
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LE-Epp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVE-EPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHhhHH
Confidence 000 000001111 122222111 13456689999986 3344555555554 3333455554 555444432
Q ss_pred c-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcch-HHHHHHHHhc
Q 002700 303 L-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPL-ALITVGRAMA 365 (890)
Q Consensus 303 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~~l~ 365 (890)
. ......+.+.+++.++..+.+.+.+.......+ .+....|++.++|.+- |+..+-..+.
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 2 233468999999999999888877654432222 2466788899999774 5555544443
No 101
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=1.6e-06 Score=67.64 Aligned_cols=58 Identities=36% Similarity=0.647 Sum_probs=46.5
Q ss_pred CcceEEEcCCCCccccCh-hccCccCCCEEEccCCCCCccch-hhhcCCCCcEEecCccc
Q 002700 562 PSLKVLNLSHAELTELPV-GIAQLVSLQHLDLSESDISELPE-ELKALVNLKCLNLEWTR 619 (890)
Q Consensus 562 ~~Lr~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~ 619 (890)
++|++|++++|.++.+|. .+..+++|++|++++|.++.+|. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 468888888888888864 56778888888888888887765 57888888888888775
No 102
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=4.5e-06 Score=97.84 Aligned_cols=103 Identities=23% Similarity=0.321 Sum_probs=78.7
Q ss_pred CceEEEecccccccccchhhccCCcceEEEcCCCCcc-ccChhccCccCCCEEEccCCCCC-ccchhhhcCCCCcEEecC
Q 002700 539 HLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELT-ELPVGIAQLVSLQHLDLSESDIS-ELPEELKALVNLKCLNLE 616 (890)
Q Consensus 539 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~ 616 (890)
.+..|++.+|.+....+..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|..++++.+|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4677888888877655556788888999999988887 67888888889999999988887 688888888999999998
Q ss_pred ccccccccchhhhcC-CcccccccccC
Q 002700 617 WTRYLITIPRQLVSN-LSRLHVLRMFG 642 (890)
Q Consensus 617 ~~~~l~~lp~~~i~~-l~~L~~L~l~~ 642 (890)
+|.....+|.. ++. +.++..+++.+
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTD 524 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecC
Confidence 88765677775 433 23445555443
No 103
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=9.5e-08 Score=94.47 Aligned_cols=182 Identities=23% Similarity=0.301 Sum_probs=118.7
Q ss_pred CcceEEEcCCCCcc--ccChhccCccCCCEEEccCCCCC-ccchhhhcCCCCcEEecCccccccccchh-hhcCCccccc
Q 002700 562 PSLKVLNLSHAELT--ELPVGIAQLVSLQHLDLSESDIS-ELPEELKALVNLKCLNLEWTRYLITIPRQ-LVSNLSRLHV 637 (890)
Q Consensus 562 ~~Lr~L~l~~~~l~--~lp~~i~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-~i~~l~~L~~ 637 (890)
..|++|||+...++ .+-.-++++.+|+.|.|.++.+. .+-..+.+-.+|+.|+|+.|..++..... ++.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 36999999999887 34445678899999999998876 45567888899999999999876654432 3578999999
Q ss_pred ccccCccccccccccccchhhhhhHHhhcCCCCCceEEEEecChhhHHhhhccccccccceeeeecccCCC-Cceeecc-
Q 002700 638 LRMFGASNNVLDEASEDSVLGELVVEELLGLKYLEVISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKDT-TFLEISA- 715 (890)
Q Consensus 638 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~l~~- 715 (890)
|+++.|...... . ...+.. .-..|..|+++++... ..-.+..
T Consensus 265 LNlsWc~l~~~~-V-------tv~V~h----------------------------ise~l~~LNlsG~rrnl~~sh~~tL 308 (419)
T KOG2120|consen 265 LNLSWCFLFTEK-V-------TVAVAH----------------------------ISETLTQLNLSGYRRNLQKSHLSTL 308 (419)
T ss_pred cCchHhhccchh-h-------hHHHhh----------------------------hchhhhhhhhhhhHhhhhhhHHHHH
Confidence 999887532110 0 000000 1123445555554321 0001111
Q ss_pred cccccccceEeccccCCcceeEecCCCccccccCCCceEEEEecCCCCCC--CCcccCCCCccEEeecccc
Q 002700 716 LADLKQLNELRISECKKLEELKIDYPGVVQRFVFHGLKKVDIVKCNKLKD--LTFLAFAPNLKSIEVLGCV 784 (890)
Q Consensus 716 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~l~~c~ 784 (890)
...+++|.+|++++|..++. ..+ .....|+.|++|.++.|..+.- +-.+...|.|.+|++.+|-
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~--~~~---~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKN--DCF---QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHhCCceeeeccccccccCc--hHH---HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 23578899999998877752 111 1223488899999999875432 2235678999999999874
No 104
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.15 E-value=1.7e-06 Score=96.66 Aligned_cols=119 Identities=32% Similarity=0.470 Sum_probs=81.6
Q ss_pred Eeeecccc-ccccCCCCCCCceEEEecccccccccchhhccCC-cceEEEcCCCCccccChhccCccCCCEEEccCCCCC
Q 002700 521 ISLMDNQI-TNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMP-SLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDIS 598 (890)
Q Consensus 521 l~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~l~ 598 (890)
+....+.+ .....+...+.+..|.+.++.+..+++. ...+. +|+.|+++++.+..+|..++.+++|+.|++++|++.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 44444444 2333344556777777777777776654 33343 788888888888877777778888888888888888
Q ss_pred ccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccC
Q 002700 599 ELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFG 642 (890)
Q Consensus 599 ~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 642 (890)
.+|...+.+.+|+.|+++++. +..+|.. +..+..|++|.+..
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~ 218 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSN 218 (394)
T ss_pred hhhhhhhhhhhhhheeccCCc-cccCchh-hhhhhhhhhhhhcC
Confidence 887777677888888888776 6777764 34555677776654
No 105
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=5.2e-05 Score=83.60 Aligned_cols=183 Identities=15% Similarity=0.181 Sum_probs=104.8
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccC-----CCCCCe-EEEEEeCCccCHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQR-----PTNFSC-VIWVVVSKDLRLENIQET 228 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~-~~wv~~s~~~~~~~~~~~ 228 (890)
..++|.+..++.+.+.+..+.. +.+.++|++|+||||+|+.+.+..... ...|.. ++-+.......... .+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 4579999999999999987654 488899999999999999998875210 011211 11111111111111 111
Q ss_pred HHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc--ccccccccCCCCCCCCCcEEEEec-CChhHhhc-c
Q 002700 229 IGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR--VDLTKVGVPLPGPQNNASKVVFTT-RSEEVCGL-M 304 (890)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IiiTt-R~~~v~~~-~ 304 (890)
+.+++... -..+++-++|+|++..- ..+..+...+. .....+.+|++| ....+... .
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le-~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLE-EPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHh-CCCCceEEEEEeCCcccCCHHHH
Confidence 11111100 11245568999998532 23444444443 223345555544 33333211 2
Q ss_pred cCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcch-HHHHHH
Q 002700 305 DAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPL-ALITVG 361 (890)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g 361 (890)
.....++.+++++++....+...+.......+ .+....+++.++|.+- ++..+.
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHHHHHHH
Confidence 23457899999999999998887654442222 2677888888988654 334333
No 106
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.12 E-value=1.2e-05 Score=80.82 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=91.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL 256 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 256 (890)
...+.|+|..|+|||.|.+++++...+... -..+++++ ..+....+...+.. .. ...+++.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~------~~~f~~~~~~~~~~-------~~----~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLS------AEEFIREFADALRD-------GE----IEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEE------HHHHHHHHHHHHHT-------TS----HHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeec------HHHHHHHHHHHHHc-------cc----chhhhhhh
Confidence 457899999999999999999998732212 22455554 34445555444421 11 12344444
Q ss_pred ccCcEEEEEeccCCc---ccccc-cccCCCCCCCCCcEEEEecCChh---------HhhcccCCCcEeccCCChHHHHHH
Q 002700 257 KEKKFVLLLDDLWQR---VDLTK-VGVPLPGPQNNASKVVFTTRSEE---------VCGLMDAQKKFKVACLSDIDAWEL 323 (890)
Q Consensus 257 ~~kr~LlVlDdv~~~---~~~~~-l~~~l~~~~~~gs~IiiTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 323 (890)
++ -=+|++||++.- ..|.. +...+......|.+||+|++... +.+.+...-+++++++++++-..+
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 43 348889999632 11221 11111111234678999996542 234445567899999999999999
Q ss_pred HHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHH
Q 002700 324 FRQKVGEEALHSHPAILELAHTVAKECGGLPLALI 358 (890)
Q Consensus 324 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 358 (890)
+.+.+.......+ +++..-|++.+.+..-.+.
T Consensus 175 l~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 175 LQKKAKERGIELP---EEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHTT--S----HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHH
Confidence 9998875553333 3566777777765554443
No 107
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=5.9e-05 Score=87.12 Aligned_cols=193 Identities=13% Similarity=0.143 Sum_probs=106.5
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCC---eEEE-EEeCCccCHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFS---CVIW-VVVSKDLRLENIQETIG 230 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~w-v~~s~~~~~~~~~~~i~ 230 (890)
..++|.+..++.+.+.+..+++ ..+.++|+.|+||||+|+.++....-...... |... .+.+..++...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie------ 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE------ 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE------
Confidence 4689999999999999987654 45689999999999999999887511000000 0000 00000000000
Q ss_pred HHhCCCccccccccHHHHHHHHHHH-hccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEE-EecCChhHhh-ccc
Q 002700 231 EKIGLLNDTWKNRRIEQKAQDIFRI-LKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVV-FTTRSEEVCG-LMD 305 (890)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Ii-iTtR~~~v~~-~~~ 305 (890)
+.... .....++.++.+.+... ..+++-++|+|++.. ...+..+...+. .......+| +||+...+.. ...
T Consensus 92 --idaas-n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLE-EPP~~tifILaTte~~KLl~TI~S 167 (725)
T PRK07133 92 --MDAAS-NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLE-EPPKHVIFILATTEVHKIPLTILS 167 (725)
T ss_pred --Eeccc-cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhh-cCCCceEEEEEcCChhhhhHHHHh
Confidence 00000 00001122222222211 235667999999853 344555555554 223344444 5555544432 223
Q ss_pred CCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcch-HHHHHH
Q 002700 306 AQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPL-ALITVG 361 (890)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g 361 (890)
....+.+.+++.++....+...+.......+ .+.+..|++.++|.+- |+..+.
T Consensus 168 Rcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 168 RVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 3468999999999999888876544332222 2457789999998764 444443
No 108
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.09 E-value=3e-05 Score=86.64 Aligned_cols=167 Identities=11% Similarity=0.093 Sum_probs=101.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL 256 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 256 (890)
...+.|+|..|+|||+|++++++.... ...-..+++++ ..++...+...++.. ......+++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~---------~~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKT---------HKEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHh---------hhHHHHHHHHh
Confidence 356899999999999999999997521 12223344443 345566666555321 01223344444
Q ss_pred ccCcEEEEEeccCCc----ccccccccCCCCCCCCCcEEEEecCChh---------HhhcccCCCcEeccCCChHHHHHH
Q 002700 257 KEKKFVLLLDDLWQR----VDLTKVGVPLPGPQNNASKVVFTTRSEE---------VCGLMDAQKKFKVACLSDIDAWEL 323 (890)
Q Consensus 257 ~~kr~LlVlDdv~~~----~~~~~l~~~l~~~~~~gs~IiiTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 323 (890)
+ +.-+||+||+... ...+.+...+......|..||+|+.... +...+...-++.+++++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 4 3448889999532 1122232222211234557888876432 233444556788999999999999
Q ss_pred HHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 002700 324 FRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVG 361 (890)
Q Consensus 324 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 361 (890)
+.+++...... ..--.+...-|++.++|.|-.+.-+-
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99887543211 01124788999999999998776554
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=5.2e-05 Score=90.14 Aligned_cols=178 Identities=13% Similarity=0.190 Sum_probs=108.2
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCCC---Ce------------------EEE
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTNF---SC------------------VIW 213 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~------------------~~w 213 (890)
..+||.+..++.|...+..+++. .+.++|..|+||||+|+.+.+... -.... .| +++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~-C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~e 93 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN-CVEGPTSTPCGECDSCVALAPGGPGSLDVTE 93 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC-cccCCCCCCCcccHHHHHHHcCCCCCCcEEE
Confidence 46899999999999999887654 578999999999999999988872 11110 00 111
Q ss_pred EEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH-----HhccCcEEEEEeccCC--cccccccccCCCCCCC
Q 002700 214 VVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR-----ILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQN 286 (890)
Q Consensus 214 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-----~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~ 286 (890)
+..... ..+++..+ +++ -..+++-++|||+++. ....+.+...+. ...
T Consensus 94 idaas~-----------------------~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LE-EpP 148 (824)
T PRK07764 94 IDAASH-----------------------GGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVE-EPP 148 (824)
T ss_pred eccccc-----------------------CCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHh-CCC
Confidence 111111 11222211 111 1235666889999963 344555555554 333
Q ss_pred CCcEEEE-ecCChhHhhc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcch-HHHHHHH
Q 002700 287 NASKVVF-TTRSEEVCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPL-ALITVGR 362 (890)
Q Consensus 287 ~gs~Iii-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~ 362 (890)
..+.+|+ ||....+... ......|++..++.++..+.+.+.+.......++ +....|++.++|.+. ++..+-.
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~---eal~lLa~~sgGdlR~Al~eLEK 224 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEP---GVLPLVIRAGGGSVRDSLSVLDQ 224 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHHHH
Confidence 4555555 4444444332 2334689999999999998888776443322222 456788999999874 3334333
No 110
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.07 E-value=5.2e-07 Score=97.13 Aligned_cols=126 Identities=25% Similarity=0.419 Sum_probs=86.8
Q ss_pred cCcccccEEeeeccccccccCCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCCEEEc
Q 002700 513 KGWANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDL 592 (890)
Q Consensus 513 ~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L 592 (890)
..+..+.++++..|++..+|.-...--|++|.+.+|++..+|.. ++....|..||.+.|.+..+|..++.+..|+.|++
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 34456667777777776665433344577777777777777766 44677777777777777777777777777777777
Q ss_pred cCCCCCccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccC
Q 002700 593 SESDISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFG 642 (890)
Q Consensus 593 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 642 (890)
+.|++..+|..++. -.|..||++.|+ +..+|-. +.+|+.|++|-+.+
T Consensus 197 rRn~l~~lp~El~~-LpLi~lDfScNk-is~iPv~-fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 197 RRNHLEDLPEELCS-LPLIRLDFSCNK-ISYLPVD-FRKMRHLQVLQLEN 243 (722)
T ss_pred hhhhhhhCCHHHhC-CceeeeecccCc-eeecchh-hhhhhhheeeeecc
Confidence 77777777777763 347777777554 6777765 67777777776654
No 111
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=9e-05 Score=85.30 Aligned_cols=201 Identities=12% Similarity=0.107 Sum_probs=108.7
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEE-eCCccCHHHHHHHHHHHh
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVV-VSKDLRLENIQETIGEKI 233 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 233 (890)
..+||.+..+..+.+.+..+++. .+.++|+.|+||||+|+.+++.. .-...++.-.|.. +....+.-..-+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L-~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-CCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 46899999999999988876654 58899999999999999998876 2111111000110 000000000111111100
Q ss_pred CCCcccc---ccccHHHHHHHHHHH----hccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEE-EecCChhHhhc
Q 002700 234 GLLNDTW---KNRRIEQKAQDIFRI----LKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVV-FTTRSEEVCGL 303 (890)
Q Consensus 234 ~~~~~~~---~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Ii-iTtR~~~v~~~ 303 (890)
....... ....++++...+... ..+.+-++|+|+++. ....+.+...+. .....+.+| +|++...+...
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LE-ePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLE-EPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhhHH
Confidence 0000000 011122222211111 234566889999853 233555555554 223345544 45444444322
Q ss_pred -ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcch-HHHHHH
Q 002700 304 -MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPL-ALITVG 361 (890)
Q Consensus 304 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g 361 (890)
......+++.+++.++....+.+.+.......+ .+.+..|++.++|..- |+..+-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHH
Confidence 234568999999999988888776643332222 3567889999999654 444443
No 112
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=8.7e-05 Score=85.99 Aligned_cols=178 Identities=13% Similarity=0.174 Sum_probs=108.1
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhcc--------------------CCCCCCeEEEE
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQ--------------------RPTNFSCVIWV 214 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~f~~~~wv 214 (890)
..++|.+..++.+...+..+... .+.++|+.|+||||+|+.+.....- ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 46899999999999999887655 5789999999999999998886510 0112221 122
Q ss_pred EeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEE
Q 002700 215 VVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVV 292 (890)
Q Consensus 215 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Ii 292 (890)
..+......++. .+++++... -..+++-++|+|++.. ...+..+...+. ....++.+|
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LE-epp~~tifI 155 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLE-EPPSYAIFI 155 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHh-CCCCCeEEE
Confidence 222111111111 111211110 0124556889999853 344556666554 333455555
Q ss_pred E-ecCChhHhhc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 293 F-TTRSEEVCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 293 i-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
+ ||+...+... .....++++.++++++....+.+.+.......++ +.+..|++.++|..--+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~---~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEP---EALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHH
Confidence 5 5554444332 2334679999999999999998876554433332 56788999999876533
No 113
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=9.5e-05 Score=83.16 Aligned_cols=178 Identities=11% Similarity=0.158 Sum_probs=107.5
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCC-CCC----------------C-eEEEEEe
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRP-TNF----------------S-CVIWVVV 216 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f----------------~-~~~wv~~ 216 (890)
..++|-+..++.+...+..++.. +..++|+.|+||||+|+.+++...-.. ..+ . .++.+..
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 46899999999999999877655 568999999999999999887751100 000 0 0111111
Q ss_pred CCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH--H--hccCcEEEEEeccCC--cccccccccCCCCCCCCCcE
Q 002700 217 SKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR--I--LKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASK 290 (890)
Q Consensus 217 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~--~--l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~ 290 (890)
+... ..++..+.+.. + ..+++-++|+|++.. ......+...+. .....++
T Consensus 94 as~~-----------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LE-Epp~~t~ 149 (535)
T PRK08451 94 ASNR-----------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLE-EPPSYVK 149 (535)
T ss_pred cccc-----------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHh-hcCCceE
Confidence 1111 12222222211 0 124566899999963 233445555554 2334566
Q ss_pred EEEecCCh-hHhh-cccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 291 VVFTTRSE-EVCG-LMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 291 IiiTtR~~-~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
+|++|.+. .+.. .......+++.+++.++....+.+.+.......+ .+.+..|++.++|.+.-+..+
T Consensus 150 FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 150 FILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 66666553 2211 1123468899999999999998877654432222 357788999999988544433
No 114
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00012 Score=82.34 Aligned_cols=181 Identities=14% Similarity=0.155 Sum_probs=104.2
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccC--CC----------------CCCeEEEEEe
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQR--PT----------------NFSCVIWVVV 216 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~--~~----------------~f~~~~wv~~ 216 (890)
..++|.+..++.+.+.+..+... ...++|+.|+||||+|+.++....-. .. .|..++++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 45899999999999999876544 56789999999999999998875210 00 0011111111
Q ss_pred CCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH-HhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEE
Q 002700 217 SKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR-ILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVF 293 (890)
Q Consensus 217 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Iii 293 (890)
+...... +..++.+.+.. -..+++-++|+|+++. ....+.+...+. .......+|+
T Consensus 96 as~~gvd--------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LE-epp~~~v~Il 154 (486)
T PRK14953 96 ASNRGID--------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLE-EPPPRTIFIL 154 (486)
T ss_pred ccCCCHH--------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEE
Confidence 1111111 11111111111 1135667999999863 233445544554 2233444554
Q ss_pred -ecCChhHhhc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 294 -TTRSEEVCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 294 -TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
||+...+... ......+.+.+++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 155 ~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 155 CTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 4444333221 223357899999999999888887654332222 256678888899877544433
No 115
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.03 E-value=1.7e-05 Score=84.51 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=62.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc--cCHHHHHHHHHHHhCCCccccccc---cH-HHH
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD--LRLENIQETIGEKIGLLNDTWKNR---RI-EQK 248 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~---~~-~~~ 248 (890)
+....++|+|++|+|||||++.+++.. . ..+|+..+|+.+.+. .++.++++.+...+-...-+.... .. ...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 456789999999999999999999987 3 348999999998866 788899998854432211100000 01 111
Q ss_pred HHHHHHH-hccCcEEEEEeccC
Q 002700 249 AQDIFRI-LKEKKFVLLLDDLW 269 (890)
Q Consensus 249 ~~~l~~~-l~~kr~LlVlDdv~ 269 (890)
.+..... -.+++++|++|++.
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChh
Confidence 1112222 26899999999984
No 116
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00011 Score=85.29 Aligned_cols=193 Identities=15% Similarity=0.166 Sum_probs=109.0
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
.++||.+..++.+..++..+.. ..+.++|..|+||||+|+.+++.. ....... ....++.-...+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l-~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV-NCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4689999999999998877654 456899999999999999998876 1111000 0001111122222222211
Q ss_pred CCcccc---ccccHHHHHHHHHHHh-----ccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCC-hhHhhc
Q 002700 235 LLNDTW---KNRRIEQKAQDIFRIL-----KEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRS-EEVCGL 303 (890)
Q Consensus 235 ~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~-~~v~~~ 303 (890)
...-.. .....++. ..+.+.+ .+++-++|+|++.. ....+.+...+. .....+.+|++|.+ ..+...
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LE-epp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChhhhhHH
Confidence 100000 01112221 1122221 24567899999853 334555555554 23345566655543 333221
Q ss_pred -ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 304 -MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 304 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
......+.+.+++.++....+...+.......++ +....|++.++|.+..+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~---eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEP---GALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHH
Confidence 1233578899999999998888876544322222 56788999999988655433
No 117
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.02 E-value=5.4e-05 Score=78.92 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=79.5
Q ss_pred cccchHHHHHHHHHHhh---------c------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC
Q 002700 157 TVVGLQLQLEQVWRCLE---------E------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLR 221 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~---------~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 221 (890)
.++|.+..+++|.+... . +...-+.++|++|+||||+|+.+++..... ..-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 47898877776654321 0 234568899999999999999998865211 11111122332211
Q ss_pred HHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc----------ccccccccCCCCCCCCCcEE
Q 002700 222 LENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR----------VDLTKVGVPLPGPQNNASKV 291 (890)
Q Consensus 222 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~~gs~I 291 (890)
.+. ... ...........+ +.. ..-+|++|++..- ...+.+...+. .......+
T Consensus 84 --~l~----~~~-------~g~~~~~~~~~~-~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e-~~~~~~~v 146 (261)
T TIGR02881 84 --DLV----GEY-------IGHTAQKTREVI-KKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGME-DNRNEFVL 146 (261)
T ss_pred --Hhh----hhh-------ccchHHHHHHHH-Hhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHh-ccCCCEEE
Confidence 111 110 011111111112 111 2348899999631 12233333332 22233355
Q ss_pred EEecCChhH----------hhcccCCCcEeccCCChHHHHHHHHHHhcCc
Q 002700 292 VFTTRSEEV----------CGLMDAQKKFKVACLSDIDAWELFRQKVGEE 331 (890)
Q Consensus 292 iiTtR~~~v----------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 331 (890)
|+++..... ...+ ...+.+++++.+|-.+++.+.+...
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred EecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHHc
Confidence 555543322 1121 3467899999999999998877543
No 118
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.01 E-value=4.9e-05 Score=83.72 Aligned_cols=171 Identities=17% Similarity=0.259 Sum_probs=96.7
Q ss_pred CcccchHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCH
Q 002700 156 PTVVGLQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRL 222 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 222 (890)
..+.|+++.++++.+.+.. ...+-|.++|++|+|||++|+++++.. ...| +.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~-----i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCE-----EEeeh----
Confidence 4688999999999887632 235679999999999999999999886 2222 22211
Q ss_pred HHHHHHHHHHhCCCccccccccHHHHHHHHHHHh-ccCcEEEEEeccCCcc----------c---ccccccC---CCC-C
Q 002700 223 ENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL-KEKKFVLLLDDLWQRV----------D---LTKVGVP---LPG-P 284 (890)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~---~~~l~~~---l~~-~ 284 (890)
..+. ... .... ......+.+.. ...+.+|+|||++.-. + ...+... +.+ .
T Consensus 199 ~~l~----~~~-------~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELV----QKF-------IGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHh----Hhh-------ccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 110 0011 11222222222 3467899999985310 0 0111111 110 1
Q ss_pred CCCCcEEEEecCChhHhh-c-c---cCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc
Q 002700 285 QNNASKVVFTTRSEEVCG-L-M---DAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP 354 (890)
Q Consensus 285 ~~~gs~IiiTtR~~~v~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 354 (890)
...+.+||.||....... . . .-+..+.++..+.++-.++|+.++.........+ ...+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 123567777887654321 1 1 1245789999999999999998876543222222 345566666653
No 119
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.00 E-value=4.2e-07 Score=94.39 Aligned_cols=259 Identities=17% Similarity=0.191 Sum_probs=145.1
Q ss_pred cceEEEcCCCC-c--cccChhccCccCCCEEEccCC-CCCc--cchhhhcCCCCcEEecCccccccccchh-hhcCCccc
Q 002700 563 SLKVLNLSHAE-L--TELPVGIAQLVSLQHLDLSES-DISE--LPEELKALVNLKCLNLEWTRYLITIPRQ-LVSNLSRL 635 (890)
Q Consensus 563 ~Lr~L~l~~~~-l--~~lp~~i~~l~~L~~L~L~~~-~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~-~i~~l~~L 635 (890)
.||.|.++|+. . +.+-..-.++++++.|++.+| +|+. +-+--..+.+|++|++..|..++...-. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46777777762 2 223333345666666666665 3431 1112234566667766666554433211 23456666
Q ss_pred ccccccCccccccccccccchhhhhhHHhhcCCCCCceEEEEecChhhHHhhhccccccccceeeeecccCCCCceeecc
Q 002700 636 HVLRMFGASNNVLDEASEDSVLGELVVEELLGLKYLEVISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKDTTFLEISA 715 (890)
Q Consensus 636 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 715 (890)
.+|+++.|..-.. ..++.+. ..+..++.+.+.+|...+...+..
T Consensus 219 ~~lNlSwc~qi~~---------------------------------~gv~~~~---rG~~~l~~~~~kGC~e~~le~l~~ 262 (483)
T KOG4341|consen 219 KYLNLSWCPQISG---------------------------------NGVQALQ---RGCKELEKLSLKGCLELELEALLK 262 (483)
T ss_pred HHhhhccCchhhc---------------------------------CcchHHh---ccchhhhhhhhcccccccHHHHHH
Confidence 6666665531100 0011111 111123333334443332221111
Q ss_pred c-ccccccceEeccccCCcceeEecCCCccccccCCCceEEEEecCCCCCCCCc---ccCCCCccEEeeccccccchhcc
Q 002700 716 L-ADLKQLNELRISECKKLEELKIDYPGVVQRFVFHGLKKVDIVKCNKLKDLTF---LAFAPNLKSIEVLGCVAMEEIVS 791 (890)
Q Consensus 716 l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~---l~~l~~L~~L~l~~c~~l~~i~~ 791 (890)
. ..+.-+..+++..|..+++... | ........|+.|..++|...++.+. ..+.++|+.|.+.+|..+.+...
T Consensus 263 ~~~~~~~i~~lnl~~c~~lTD~~~-~---~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f 338 (483)
T KOG4341|consen 263 AAAYCLEILKLNLQHCNQLTDEDL-W---LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF 338 (483)
T ss_pred HhccChHhhccchhhhccccchHH-H---HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh
Confidence 1 1233455666667766653221 1 1112367899999999998777652 34789999999999988665421
Q ss_pred cCcccccccccCCCCCCCcccEEecCCcccccc--cccCCCCCCCccEEeecCCCCCCCC-----CCCCCcc-cccceEE
Q 002700 792 VGKFAAVPEVTANLNPFAKLQNLKFFGVINLKS--IYWKPLPFPNLKSMSFLHCHKLKKL-----PLDSNSA-RERNIVI 863 (890)
Q Consensus 792 ~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~--l~~~~~~~~~L~~L~i~~C~~L~~l-----p~~~~~~-~L~~l~i 863 (890)
. .--.+.+.|+.+.+.+|..... +..-...+|.|+.|.++.|...+.. ....-+. .++.+++
T Consensus 339 ----t------~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL 408 (483)
T KOG4341|consen 339 ----T------MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLEL 408 (483)
T ss_pred ----h------hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeee
Confidence 1 1234678999999998865432 2223445899999999999888775 3222233 7899999
Q ss_pred Echhhhhc
Q 002700 864 RGDRKWWE 871 (890)
Q Consensus 864 ~~~~~~~~ 871 (890)
++|+-..|
T Consensus 409 ~n~p~i~d 416 (483)
T KOG4341|consen 409 DNCPLITD 416 (483)
T ss_pred cCCCCchH
Confidence 99986664
No 120
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00014 Score=81.40 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=105.6
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCC--------------------CCCeEEEE
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPT--------------------NFSCVIWV 214 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--------------------~f~~~~wv 214 (890)
.+++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+++....... +++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 4689999999999999987765 56789999999999999999887621100 111 1111
Q ss_pred EeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHH-HHhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEE
Q 002700 215 VVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIF-RILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKV 291 (890)
Q Consensus 215 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~I 291 (890)
......... ++.+..+.+. ....+++-++|+|++.. ....+.+...+. ....+..+
T Consensus 96 ~g~~~~gid--------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lE-ep~~~~~~ 154 (451)
T PRK06305 96 DGASHRGIE--------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLE-EPPQHVKF 154 (451)
T ss_pred eccccCCHH--------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhh-cCCCCceE
Confidence 111111111 1111111111 01135677899999853 233444555554 33335566
Q ss_pred EEecC-ChhHhhc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcch-HHHHH
Q 002700 292 VFTTR-SEEVCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPL-ALITV 360 (890)
Q Consensus 292 iiTtR-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 360 (890)
|++|. ...+... ......+++.++++++....+...+.......+ .+.+..|++.++|.+- |+..+
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 65553 3333221 223457899999999999888876654332222 3567889999999764 44444
No 121
>PLN03150 hypothetical protein; Provisional
Probab=97.98 E-value=1.3e-05 Score=93.93 Aligned_cols=109 Identities=24% Similarity=0.336 Sum_probs=90.4
Q ss_pred cccEEeeecccccc-cc-CCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCcc-ccChhccCccCCCEEEcc
Q 002700 517 NARRISLMDNQITN-LS-EIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELT-ELPVGIAQLVSLQHLDLS 593 (890)
Q Consensus 517 ~~~~l~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~l~~L~~L~L~ 593 (890)
.++.|++.++.+.. +| .+..+++|+.|++++|.+....+..+..+++|++|+|++|.+. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47788888887764 23 4678999999999999987655666899999999999999988 689999999999999999
Q ss_pred CCCCC-ccchhhhcC-CCCcEEecCccccccccc
Q 002700 594 ESDIS-ELPEELKAL-VNLKCLNLEWTRYLITIP 625 (890)
Q Consensus 594 ~~~l~-~lp~~~~~l-~~L~~L~l~~~~~l~~lp 625 (890)
+|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99887 899988764 577889998886544443
No 122
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.98 E-value=0.00064 Score=67.88 Aligned_cols=190 Identities=16% Similarity=0.164 Sum_probs=99.6
Q ss_pred CcccchHHHHHHHHHHhhc-----CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE-----ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIG 230 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 230 (890)
.+|||.++.++++.=.+.. +..--|.++|++|.||||||.-+++.. .+ .+. ++.+....-..=+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--CeE----ecccccccChhhHHHHH
Confidence 4689999888888666643 467789999999999999999999987 22 221 11111111111111222
Q ss_pred HHhCCCccccccccHHHH----HHHHHHHhccCcEEEEEeccCCcccccccccCCCCCCCCCcEEEEecCChhHhhcccC
Q 002700 231 EKIGLLNDTWKNRRIEQK----AQDIFRILKEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGLMDA 306 (890)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~----~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~~~~ 306 (890)
..+...+- .--..+..+ -+.+.-.+.+-+.=|++.-= ..-..+...+| +=+-|=-|||.-.+.+.+..
T Consensus 99 t~Le~~DV-LFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~g---p~Arsv~ldLp----pFTLIGATTr~G~lt~PLrd 170 (332)
T COG2255 99 TNLEEGDV-LFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKG---PAARSIRLDLP----PFTLIGATTRAGMLTNPLRD 170 (332)
T ss_pred hcCCcCCe-EEEehhhhcChhHHHHhhhhhhheeEEEEEccC---CccceEeccCC----CeeEeeeccccccccchhHH
Confidence 22211100 000000000 11122222222222222210 11111222222 11223358887665443322
Q ss_pred --CCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHHHH
Q 002700 307 --QKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRA 363 (890)
Q Consensus 307 --~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~ 363 (890)
..+.+++-.+.+|-.++..+.+..-....+ .+.+.+|+++..|-|--..-+-+.
T Consensus 171 RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 171 RFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHH
Confidence 346789999999999999888754433333 367899999999999655444433
No 123
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.97 E-value=0.0001 Score=77.41 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=81.5
Q ss_pred cccchHHHHHHHHHHhh---c-------C-----CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC
Q 002700 157 TVVGLQLQLEQVWRCLE---E-------E-----SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLR 221 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~---~-------~-----~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 221 (890)
.++|.++.+++|.+... . + ...-+.++|.+|+||||+|+.++..... .......-++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH---
Confidence 46887777766654321 0 0 1225889999999999999888776521 12111112444432
Q ss_pred HHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc-----------ccccccccCCCCCCCCCcE
Q 002700 222 LENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR-----------VDLTKVGVPLPGPQNNASK 290 (890)
Q Consensus 222 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~gs~ 290 (890)
.+ +...+... +.......+.+ . ..-+|+||++..- .....+...+. ....+.+
T Consensus 99 -~~----l~~~~~g~-------~~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le-~~~~~~~ 162 (284)
T TIGR02880 99 -DD----LVGQYIGH-------TAPKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NQRDDLV 162 (284)
T ss_pred -HH----HhHhhccc-------chHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHh-cCCCCEE
Confidence 11 22221111 11111111221 1 3368999998521 11223333333 3334567
Q ss_pred EEEecCChhHhhcc--------cCCCcEeccCCChHHHHHHHHHHhcC
Q 002700 291 VVFTTRSEEVCGLM--------DAQKKFKVACLSDIDAWELFRQKVGE 330 (890)
Q Consensus 291 IiiTtR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~~~~ 330 (890)
||+++.....-... .....+++++++.+|-.+++...+..
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 77776543221111 11356899999999999998887654
No 124
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00018 Score=83.40 Aligned_cols=194 Identities=14% Similarity=0.097 Sum_probs=106.7
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
..++|.+..++.|..++..++. ..+.++|..|+||||+|+.+++... . ...+... ......-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~-c-~~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN-C-LNSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc-C-CCcCCCC----CCCCcccHHHHHHhcCCC
Confidence 4589999999999999987653 5788999999999999999998862 1 1111000 001111111222221111
Q ss_pred CCc---cccccccHHHHHHHHHHHh-----ccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEE-ecCChhHhhc
Q 002700 235 LLN---DTWKNRRIEQKAQDIFRIL-----KEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVF-TTRSEEVCGL 303 (890)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Iii-TtR~~~v~~~ 303 (890)
... +......+++..+.+ +.+ .+++-++|+|+++. ......+...+. .......+|+ |+....+...
T Consensus 90 ~D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LE-ePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLE-EPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHh-cCCcCeEEEEEeCChhhhhHH
Confidence 000 000011122221111 111 24566899999963 334555655554 2233444454 4443333221
Q ss_pred -ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 304 -MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 304 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
......+.+..++.++....+.+.+.......++ +.+..|++.++|.+..+..+
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~---~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEP---EALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHHHHH
Confidence 1233567888999999888887766543322222 55788999999987654433
No 125
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=8.5e-06 Score=58.04 Aligned_cols=39 Identities=36% Similarity=0.641 Sum_probs=21.6
Q ss_pred cceEEEcCCCCccccChhccCccCCCEEEccCCCCCccc
Q 002700 563 SLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELP 601 (890)
Q Consensus 563 ~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp 601 (890)
+|++|++++|.++.+|..+++|++|++|++++|.|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666666555566666666666666555443
No 126
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.96 E-value=4.9e-05 Score=76.42 Aligned_cols=182 Identities=14% Similarity=0.166 Sum_probs=113.4
Q ss_pred CCcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCe-EEEEEeCCccCHHHHHHHHHHHh
Q 002700 155 EPTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSC-VIWVVVSKDLRLENIQETIGEKI 233 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l 233 (890)
-..++|-+..+..+.+.+......+...+|++|.|||+-|.+++... --.+-|.+ ++-.++|......-+-..+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki---- 109 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI---- 109 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh----
Confidence 35689999999999999988778899999999999999999998887 32345554 3334455443322111100
Q ss_pred CCCccccccccHHHHHHHHHHHh--ccCc-EEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCChh-Hhhcc-cC
Q 002700 234 GLLNDTWKNRRIEQKAQDIFRIL--KEKK-FVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRSEE-VCGLM-DA 306 (890)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~~~-v~~~~-~~ 306 (890)
.+...+........ ..++ -.+|||+++. .+.|..+...+. .....++.|+.+.... +.... ..
T Consensus 110 ---------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE-~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 110 ---------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME-DFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred ---------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh-ccccceEEEEEcCChhhCChHHHhh
Confidence 11111111000000 0123 4788999864 466888877665 4455566554443332 21111 11
Q ss_pred CCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc
Q 002700 307 QKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP 354 (890)
Q Consensus 307 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 354 (890)
-..|..++|.+++...-+...+..+....+. +..+.|++.++|--
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDIDD---DALKLIAKISDGDL 224 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCcH
Confidence 2467889999999999998888766654444 56788999988753
No 127
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.94 E-value=0.00023 Score=73.04 Aligned_cols=200 Identities=17% Similarity=0.134 Sum_probs=115.9
Q ss_pred CcccchHH---HHHHHHHHhhc---CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCC----eEEEEEeCCccCHHHH
Q 002700 156 PTVVGLQL---QLEQVWRCLEE---ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFS----CVIWVVVSKDLRLENI 225 (890)
Q Consensus 156 ~~~vGr~~---~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~----~~~wv~~s~~~~~~~~ 225 (890)
+..||-.. .++++.+++.. .+..-+.|+|.+|.|||++++++.+.+. ....-+ .++.|......+...+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCCCccccEEEEecCCCCChHHH
Confidence 34555432 34444444543 3556799999999999999999998872 222112 4777888889999999
Q ss_pred HHHHHHHhCCCccccccccHHHHHHHHHHHhcc-CcEEEEEeccCCc-----c---cccccccCCCCCCCCCcEEEEecC
Q 002700 226 QETIGEKIGLLNDTWKNRRIEQKAQDIFRILKE-KKFVLLLDDLWQR-----V---DLTKVGVPLPGPQNNASKVVFTTR 296 (890)
Q Consensus 226 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~-----~---~~~~l~~~l~~~~~~gs~IiiTtR 296 (890)
+..|+.+++.+... ..+...........++. +--+||+|++.+- . ..-.....+. ..-.=+-|.+-|+
T Consensus 113 Y~~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~-NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 113 YSAILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG-NELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh-hccCCCeEEeccH
Confidence 99999999987642 23444444445555543 5569999998642 1 1111112221 1222345556555
Q ss_pred ChhHhhcc-----cCCCcEeccCCChHH-HHHHHHHHhcC--cccCCChhHHHHHHHHHHHcCCcchHHHH
Q 002700 297 SEEVCGLM-----DAQKKFKVACLSDID-AWELFRQKVGE--EALHSHPAILELAHTVAKECGGLPLALIT 359 (890)
Q Consensus 297 ~~~v~~~~-----~~~~~~~l~~L~~~e-a~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 359 (890)
+---+-.. ....++.++....++ ...|+...... -..++.-...+++..|...++|+.--+..
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 43222111 112456666666544 44444332111 11122223468999999999998755543
No 128
>CHL00181 cbbX CbbX; Provisional
Probab=97.93 E-value=0.0002 Score=75.12 Aligned_cols=155 Identities=11% Similarity=0.109 Sum_probs=82.0
Q ss_pred cccchHHHHHHHHHHhh--------c-------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC
Q 002700 157 TVVGLQLQLEQVWRCLE--------E-------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLR 221 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~--------~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 221 (890)
.++|.++.+++|.+... . .....+.++|.+|+||||+|+.+++.... ...-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~--- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTR--- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecH---
Confidence 46787776665544421 0 12335889999999999999999886511 11111112444441
Q ss_pred HHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc-----------ccccccccCCCCCCCCCcE
Q 002700 222 LENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR-----------VDLTKVGVPLPGPQNNASK 290 (890)
Q Consensus 222 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~gs~ 290 (890)
..+ ....... ........+.+ . ..-+|++|++..- .....+...+. ....+.+
T Consensus 100 -~~l----~~~~~g~-------~~~~~~~~l~~-a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me-~~~~~~~ 163 (287)
T CHL00181 100 -DDL----VGQYIGH-------TAPKTKEVLKK-A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME-NQRDDLV 163 (287)
T ss_pred -HHH----HHHHhcc-------chHHHHHHHHH-c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHh-cCCCCEE
Confidence 122 2211110 11111111222 1 2349999998531 11122233333 3334567
Q ss_pred EEEecCChhHhhcc--------cCCCcEeccCCChHHHHHHHHHHhcCc
Q 002700 291 VVFTTRSEEVCGLM--------DAQKKFKVACLSDIDAWELFRQKVGEE 331 (890)
Q Consensus 291 IiiTtR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 331 (890)
||+++....+.... .....+.+++++.+|..+++...+...
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 77777644331111 124578999999999999988876543
No 129
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.90 E-value=0.00015 Score=80.85 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=92.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL 256 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 256 (890)
...+.|+|.+|+|||+|++++++.... ...-..++++++ .++...+...+... ... .+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~~----~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILE-NNPNAKVVYVSS------EKFTNDFVNALRNN-------KME----EFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH-hCCCCcEEEEEH------HHHHHHHHHHHHcC-------CHH----HHHHHH
Confidence 357899999999999999999998722 111234556643 23334444443211 112 233333
Q ss_pred ccCcEEEEEeccCCcc---c-ccccccCCCCCCCCCcEEEEecCCh-h--------HhhcccCCCcEeccCCChHHHHHH
Q 002700 257 KEKKFVLLLDDLWQRV---D-LTKVGVPLPGPQNNASKVVFTTRSE-E--------VCGLMDAQKKFKVACLSDIDAWEL 323 (890)
Q Consensus 257 ~~kr~LlVlDdv~~~~---~-~~~l~~~l~~~~~~gs~IiiTtR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~L 323 (890)
++ .-+|||||+.... . .+.+...+......|..||+|+... . +.+.+.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 32 3488999996321 1 1112211110112355677877642 2 223333445789999999999999
Q ss_pred HHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 324 FRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 324 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
+.+.+.......+ .+....|++.+.|.+-.+
T Consensus 277 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 277 LQKKAEEEGLELP---DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHH
Confidence 9988865443333 367778888888776543
No 130
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00018 Score=83.18 Aligned_cols=196 Identities=14% Similarity=0.141 Sum_probs=106.4
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
.++||.+..++.+.+.+..+.+. .+.++|+.|+||||+|+.+++... -....+. ..++.-..-+.|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~-c~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN-CEQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-CCCCCCC-------CCCCccHHHHHHhcCCC
Confidence 46899999999999999877654 568999999999999999988752 1111000 00000000000000000
Q ss_pred CCc---cccccc---cHHHHHHHHHHH-hccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEE-ecCChhHhhc-
Q 002700 235 LLN---DTWKNR---RIEQKAQDIFRI-LKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVF-TTRSEEVCGL- 303 (890)
Q Consensus 235 ~~~---~~~~~~---~~~~~~~~l~~~-l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Iii-TtR~~~v~~~- 303 (890)
... +..... ++.++...+... ..+++-++|+|+++. ....+.+...+. .....+.+|+ ||....+...
T Consensus 88 ~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LE-epp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLE-EPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHH-cCCCCeEEEEEeCChhhhhHHH
Confidence 000 000001 111222111110 134556899999853 334455555554 2233555554 5554444322
Q ss_pred ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc-hHHHHHHHH
Q 002700 304 MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP-LALITVGRA 363 (890)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~g~~ 363 (890)
......+.+.+++.++....+...+.......+ .+....|++.++|.. .|+..+-..
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 223457889999999988888776654432222 256778889998865 455554433
No 131
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00032 Score=80.41 Aligned_cols=191 Identities=14% Similarity=0.124 Sum_probs=106.8
Q ss_pred CcccchHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
..++|-+..++.+...+..+... .+.++|+.|+||||+|+.+++... -...... ..+.....- +.+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~---~pC~~C~~C----~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTP---MPCGECSSC----KSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCC---CCCccchHH----HHHHcCCC
Confidence 46899999999999999876554 688999999999999999988762 1111000 000000000 01100000
Q ss_pred CCc---cccccccHHHHHH---HHHH-HhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCC-hhHhhc-
Q 002700 235 LLN---DTWKNRRIEQKAQ---DIFR-ILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRS-EEVCGL- 303 (890)
Q Consensus 235 ~~~---~~~~~~~~~~~~~---~l~~-~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~-~~v~~~- 303 (890)
... +.......++... .+.. -..+++-++|+|++.. ...++.+...+. .....+.+|++|.. ..+...
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE-epp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE-EPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc-cCCCCEEEEEecCChHHhHHHH
Confidence 000 0000111222211 1111 1235666899999853 344555655554 33345666655543 333221
Q ss_pred ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHH
Q 002700 304 MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALI 358 (890)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 358 (890)
......++..+++.++....+.+.+.......+ .+.+..|++.++|.+-.+.
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 223456899999999998888877644332222 3567788999999875443
No 132
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.00011 Score=82.18 Aligned_cols=179 Identities=17% Similarity=0.169 Sum_probs=102.3
Q ss_pred cccchHHHH--HHHHHHhhcC-CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCC-eEEEEEeCCccCHHHHHHHHHHH
Q 002700 157 TVVGLQLQL--EQVWRCLEEE-SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFS-CVIWVVVSKDLRLENIQETIGEK 232 (890)
Q Consensus 157 ~~vGr~~~~--~~l~~~L~~~-~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~ 232 (890)
.++|-.... ....+..... ...-+.|+|.+|+|||+||+++++... ..+.. .++|++. .++...+...
T Consensus 107 Fv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~ 178 (440)
T PRK14088 107 FVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDS 178 (440)
T ss_pred cccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHH
Confidence 355754332 2333333322 245699999999999999999999862 22222 4666654 3445555554
Q ss_pred hCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc---ccc-cccccCCCCCCCCCcEEEEecC-ChhH-------
Q 002700 233 IGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR---VDL-TKVGVPLPGPQNNASKVVFTTR-SEEV------- 300 (890)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~-~~l~~~l~~~~~~gs~IiiTtR-~~~v------- 300 (890)
+.. .... .+++.++.+.-+|++||+... ..+ +.+...+......|..||+||+ .+.-
T Consensus 179 ~~~-------~~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 179 MKE-------GKLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred Hhc-------ccHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 421 1112 233334445568999999632 111 1121111101123456888874 3322
Q ss_pred -hhcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 301 -CGLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 301 -~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
.+.+....++.+++.+.+.-.+++.+.+.......+ .++...|++.+.|.--.+
T Consensus 248 L~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 248 LVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHH
Confidence 223344567899999999999999988764433333 366788888887765443
No 133
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.85 E-value=0.00011 Score=79.80 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=56.1
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQE 227 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 227 (890)
..+++.+..++.+...|... +.|.++|++|+|||++|+++++.. .....|+.+.||.++...+..+...
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 35788889999999988643 578889999999999999999887 4445788899999998887666543
No 134
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.00025 Score=79.12 Aligned_cols=153 Identities=11% Similarity=0.103 Sum_probs=87.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL 256 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 256 (890)
...+.|+|..|+|||+|++++++... .....+++++. ..+...+...+... . ...+++.+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~~------~~f~~~~~~~l~~~-------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVRS------ELFTEHLVSAIRSG-------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEeeH------HHHHHHHHHHHhcc-------h----HHHHHHHc
Confidence 35689999999999999999999872 12233455542 33344444443211 1 12233333
Q ss_pred ccCcEEEEEeccCCccc----ccccccCCCCCCCCCcEEEEecCCh-h--------HhhcccCCCcEeccCCChHHHHHH
Q 002700 257 KEKKFVLLLDDLWQRVD----LTKVGVPLPGPQNNASKVVFTTRSE-E--------VCGLMDAQKKFKVACLSDIDAWEL 323 (890)
Q Consensus 257 ~~kr~LlVlDdv~~~~~----~~~l~~~l~~~~~~gs~IiiTtR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~L 323 (890)
+ +.-+|++||+..-.. .+.+...+......|..||+||... . +.+.+....++.+.+++.++-..+
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 344888899853211 1112111110012355788888542 1 233344456889999999999999
Q ss_pred HHHHhcCcccCCChhHHHHHHHHHHHcCCc
Q 002700 324 FRQKVGEEALHSHPAILELAHTVAKECGGL 353 (890)
Q Consensus 324 f~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 353 (890)
+.+++.......++ ++..-|++.+.|.
T Consensus 280 L~~k~~~~~~~l~~---evl~~la~~~~~d 306 (445)
T PRK12422 280 LERKAEALSIRIEE---TALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHcCCCCCH---HHHHHHHHhcCCC
Confidence 98887654323333 4555566666543
No 135
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.83 E-value=1.2e-05 Score=89.85 Aligned_cols=172 Identities=28% Similarity=0.387 Sum_probs=118.6
Q ss_pred ccccEEeeeccccccccCCCCCC--CceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCCEEEcc
Q 002700 516 ANARRISLMDNQITNLSEIPTCP--HLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLS 593 (890)
Q Consensus 516 ~~~~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~ 593 (890)
+.+..+.+.++.+..++...... +|+.|++..|.+..++.. +..++.|+.|++++|.+..+|...+.+..|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 56788888888888887655543 888899988888777522 677888999999999888888777788889999999
Q ss_pred CCCCCccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccCccccccccccccchhhhhhHHhhcCCCCCce
Q 002700 594 ESDISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVVEELLGLKYLEV 673 (890)
Q Consensus 594 ~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 673 (890)
+|++..+|..+..+..|+.|.++++. ....+.. +.++.++..|.+.+.. .. .....+..+..++.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~---~~----------~~~~~~~~l~~l~~ 259 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNK---LE----------DLPESIGNLSNLET 259 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCce---ee----------eccchhccccccce
Confidence 99998888887777888888888885 3334433 6677777777643221 10 01234555566777
Q ss_pred EEEEecChhhHHhhhccccccccceeeeecccCC
Q 002700 674 ISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKD 707 (890)
Q Consensus 674 L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 707 (890)
|+++.+....+.. ......++.|++++...
T Consensus 260 L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 260 LDLSNNQISSISS----LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ecccccccccccc----ccccCccCEEeccCccc
Confidence 7766555444333 22234677777766543
No 136
>PRK06620 hypothetical protein; Validated
Probab=97.83 E-value=7.2e-05 Score=74.88 Aligned_cols=133 Identities=13% Similarity=0.055 Sum_probs=79.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhc
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILK 257 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 257 (890)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. . . +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~--------------------~---~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF--------------------N---E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh--------------------c---h-------hHH-
Confidence 569999999999999999987764 11 1111 0000 0 0 011
Q ss_pred cCcEEEEEeccCCcc--cccccccCCCCCCCCCcEEEEecCChh-------HhhcccCCCcEeccCCChHHHHHHHHHHh
Q 002700 258 EKKFVLLLDDLWQRV--DLTKVGVPLPGPQNNASKVVFTTRSEE-------VCGLMDAQKKFKVACLSDIDAWELFRQKV 328 (890)
Q Consensus 258 ~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~~gs~IiiTtR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (890)
...-++++||+..-. .+-.+...+ ...|..||+|++... ..+.+....+++++++++++-..++.+.+
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~---~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNII---NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHH---HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 123478889995221 111111111 134678999887543 23344455689999999999888888776
Q ss_pred cCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 329 GEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 329 ~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
.......+ +++..-|++++.|.--.+
T Consensus 161 ~~~~l~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 161 SISSVTIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHcCCCCC---HHHHHHHHHHccCCHHHH
Confidence 53332232 366777777776655443
No 137
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.82 E-value=0.00023 Score=76.84 Aligned_cols=145 Identities=12% Similarity=0.140 Sum_probs=83.0
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
..++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.. ... +..++.+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 4689999999999999887654 577779999999999999998875 221 23334333 111111111110000
Q ss_pred CCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc---ccccccccCCCCCCCCCcEEEEecCChhHh-h-cccCCCc
Q 002700 235 LLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR---VDLTKVGVPLPGPQNNASKVVFTTRSEEVC-G-LMDAQKK 309 (890)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~-~-~~~~~~~ 309 (890)
. ..+.+.+-++|+||+..- .....+...+. ....++++|+||...... . .......
T Consensus 94 ----------------~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le-~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 94 ----------------T--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFME-AYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred ----------------h--hcccCCCeEEEEECcccccCHHHHHHHHHHHH-hcCCCceEEEEcCChhhchHHHHhhceE
Confidence 0 001234568999999633 11222332232 334567888888654321 1 1112235
Q ss_pred EeccCCChHHHHHHHHH
Q 002700 310 FKVACLSDIDAWELFRQ 326 (890)
Q Consensus 310 ~~l~~L~~~ea~~Lf~~ 326 (890)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 67777777777766554
No 138
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.81 E-value=0.00025 Score=85.55 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=87.4
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccC--CC-CCCeEEE-EEeCCccCHHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQR--PT-NFSCVIW-VVVSKDLRLENIQETIGE 231 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~-~f~~~~w-v~~s~~~~~~~~~~~i~~ 231 (890)
..++||+.++.++++.|......-+.++|.+|+||||+|+.++.+.... .. -.+..+| +..+. + ..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l----~a 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L----QA 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h----hc
Confidence 4589999999999999987766677899999999999999999886211 00 1122332 22211 0 00
Q ss_pred HhCCCccccccccHHHHHHHHHHHh--ccCcEEEEEeccCCc---------cccc-ccccCCCCCCCCCcEEEEecCChh
Q 002700 232 KIGLLNDTWKNRRIEQKAQDIFRIL--KEKKFVLLLDDLWQR---------VDLT-KVGVPLPGPQNNASKVVFTTRSEE 299 (890)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~---------~~~~-~l~~~l~~~~~~gs~IiiTtR~~~ 299 (890)
+.. ......+....+.+.+ .+++.+|++|++..- .+.. .+...+. ...-++|-||...+
T Consensus 257 --g~~----~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~---~G~l~~IgaTT~~e 327 (852)
T TIGR03345 257 --GAS----VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA---RGELRTIAATTWAE 327 (852)
T ss_pred --ccc----cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh---CCCeEEEEecCHHH
Confidence 000 0111222222222222 247899999998531 1111 1233322 12345555555432
Q ss_pred Hhh-------cccCCCcEeccCCChHHHHHHHHHHh
Q 002700 300 VCG-------LMDAQKKFKVACLSDIDAWELFRQKV 328 (890)
Q Consensus 300 v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (890)
... .......+.+++++.++..+++....
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 211 11123589999999999999975443
No 139
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=8.3e-05 Score=79.88 Aligned_cols=63 Identities=14% Similarity=0.266 Sum_probs=38.9
Q ss_pred ccCCcceEEEcCCCCccccChhccCccCCCEEEccCC-CCCccchhhhcCCCCcEEecCccccccccch
Q 002700 559 QFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSES-DISELPEELKALVNLKCLNLEWTRYLITIPR 626 (890)
Q Consensus 559 ~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 626 (890)
..+++++.|++++|.++.+| .+ ..+|+.|.+++| .++.+|..+ ..+|++|++++|..+..+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 33566777777777777666 11 235777777665 566666554 24677777777755555554
No 140
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=2.8e-05 Score=55.42 Aligned_cols=41 Identities=41% Similarity=0.592 Sum_probs=35.2
Q ss_pred cCCCEEEccCCCCCccchhhhcCCCCcEEecCccccccccch
Q 002700 585 VSLQHLDLSESDISELPEELKALVNLKCLNLEWTRYLITIPR 626 (890)
Q Consensus 585 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 626 (890)
++|++|++++|.|+.+|..+++|++|+.|++++|. +..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 47999999999999999999999999999999997 676664
No 141
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.80 E-value=0.00016 Score=75.03 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=104.7
Q ss_pred CCcccchHHHHHHHHHHhhcCC---eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHH
Q 002700 155 EPTVVGLQLQLEQVWRCLEEES---VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGE 231 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~---~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 231 (890)
.+.|.+|+.++..+..++.+.. +..|-|+|-+|.|||.+.+++++.. . -..+|+++-+.++...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n---~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---N---LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---C---CcceeeehHHhccHHHHHHHHHH
Confidence 4678899999999999997643 3456899999999999999999886 2 23689999999999999999999
Q ss_pred HhCCCcccccc-----ccHHHHHHHHHH--Hhc--cCcEEEEEeccCCccccccc--------ccCCCCCCCCCcEEEEe
Q 002700 232 KIGLLNDTWKN-----RRIEQKAQDIFR--ILK--EKKFVLLLDDLWQRVDLTKV--------GVPLPGPQNNASKVVFT 294 (890)
Q Consensus 232 ~l~~~~~~~~~-----~~~~~~~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~l--------~~~l~~~~~~gs~IiiT 294 (890)
+.+..+.+... ....+.+..+.+ ... ++.++||||+++.-.|.+.+ -..++ .+ .-+|++
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~---~~-~i~iil 154 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN---EP-TIVIIL 154 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC---CC-ceEEEE
Confidence 98632221111 112222333333 122 46899999999654443322 11111 12 233443
Q ss_pred cCCh--hH-hhcccCC--CcEeccCCChHHHHHHHHHH
Q 002700 295 TRSE--EV-CGLMDAQ--KKFKVACLSDIDAWELFRQK 327 (890)
Q Consensus 295 tR~~--~v-~~~~~~~--~~~~l~~L~~~ea~~Lf~~~ 327 (890)
+-.. .. ...++.. .++..+..+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3322 11 2223333 35567888999998888653
No 142
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.0014 Score=70.03 Aligned_cols=203 Identities=19% Similarity=0.208 Sum_probs=118.4
Q ss_pred CCcccchHHHHHHHHHHhhc----CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHH
Q 002700 155 EPTVVGLQLQLEQVWRCLEE----ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIG 230 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 230 (890)
+..++||+.+++.+.+++.. ...+-+.|.|-+|.|||.+...++.+...- ..--+++++++..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~-~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKS-SKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhh-cccceeEEEeeccccchHHHHHHHH
Confidence 45689999999999998864 356789999999999999999999987211 1112457777765556677777777
Q ss_pred HHh--CCCccccccccHHHHHHHHHHHhccC--cEEEEEeccCCc--ccccccccCCCCCCCCCcEEEEecCCh--hH--
Q 002700 231 EKI--GLLNDTWKNRRIEQKAQDIFRILKEK--KFVLLLDDLWQR--VDLTKVGVPLPGPQNNASKVVFTTRSE--EV-- 300 (890)
Q Consensus 231 ~~l--~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IiiTtR~~--~v-- 300 (890)
..+ ... ......+....+.+...+. -+|+|+|..+.- ..-..+...|....-+++|+|+.---. +.
T Consensus 228 ~~~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 228 SSLLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 766 111 1122245555666666443 589999998531 111111111110123456665432111 11
Q ss_pred --hhc-----ccCCCcEeccCCChHHHHHHHHHHhcCcccCC--ChhHHHHHHHHHHHcCCcchHHHHHHH
Q 002700 301 --CGL-----MDAQKKFKVACLSDIDAWELFRQKVGEEALHS--HPAILELAHTVAKECGGLPLALITVGR 362 (890)
Q Consensus 301 --~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~--~~~~~~~~~~i~~~c~GlPLai~~~g~ 362 (890)
... .-....+..+|.+.++-.++|.++........ +..++-.|++++.-.|.+--|+.+.-+
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 111 11235678899999999999999876543111 122233334444444444455544443
No 143
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.78 E-value=0.00015 Score=82.07 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=93.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL 256 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 256 (890)
...+.|+|.+|+|||+|++++++... ....-..+++++.. .+...+...+.. ... ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFVNALRN-------NTM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHHHHHHc-------CcH----HHHHHHH
Confidence 35789999999999999999999872 11112345565442 333334443321 111 2233334
Q ss_pred ccCcEEEEEeccCCc---c-cccccccCCCCCCCCCcEEEEecCChh---------HhhcccCCCcEeccCCChHHHHHH
Q 002700 257 KEKKFVLLLDDLWQR---V-DLTKVGVPLPGPQNNASKVVFTTRSEE---------VCGLMDAQKKFKVACLSDIDAWEL 323 (890)
Q Consensus 257 ~~kr~LlVlDdv~~~---~-~~~~l~~~l~~~~~~gs~IiiTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 323 (890)
+ +.-+|||||+..- . ..+.+...+......|..||+||.... +.+.+....++++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 3448999999531 1 111222211101123455788776532 233444456899999999999999
Q ss_pred HHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 324 FRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 324 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
+.+.+.......++ ++...|++.+.|..-.+
T Consensus 289 l~~~~~~~~~~l~~---e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 289 LKKKAEEEGIDLPD---EVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHcCCCCCH---HHHHHHHcCcCCCHHHH
Confidence 99987653323333 67888888888876644
No 144
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=1.6e-05 Score=78.99 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=23.5
Q ss_pred ccCCCceEEEEecCCCCCCCCc-------ccCCCCccEEeec
Q 002700 747 FVFHGLKKVDIVKCNKLKDLTF-------LAFAPNLKSIEVL 781 (890)
Q Consensus 747 ~~~~~L~~L~L~~c~~l~~l~~-------l~~l~~L~~L~l~ 781 (890)
..|+.|..|.+.+.+-+..+.. ++.+++++.|+=+
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 3477788888887776554432 4577888877654
No 145
>PF14516 AAA_35: AAA-like domain
Probab=97.77 E-value=0.002 Score=69.49 Aligned_cols=202 Identities=13% Similarity=0.138 Sum_probs=118.3
Q ss_pred CCcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-----cCHHH----H
Q 002700 155 EPTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD-----LRLEN----I 225 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~----~ 225 (890)
.+..|.|...-+++.+.+.+. ...+.|.|+-.+|||+|..++.+.. .. .. ..++++++..- .+... +
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~~-~~-~~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-QQ-QG-YRCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-HH-CC-CEEEEEEeecCCCcccCCHHHHHHHH
Confidence 345678986777777777653 3689999999999999999999887 22 23 34557776541 23444 4
Q ss_pred HHHHHHHhCCCccc---cc--cccHHHHHHHHHHHh---ccCcEEEEEeccCCccc----ccccccCCCC---C-----C
Q 002700 226 QETIGEKIGLLNDT---WK--NRRIEQKAQDIFRIL---KEKKFVLLLDDLWQRVD----LTKVGVPLPG---P-----Q 285 (890)
Q Consensus 226 ~~~i~~~l~~~~~~---~~--~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~----~~~l~~~l~~---~-----~ 285 (890)
...+..++++...- +. ..........+.+.+ .+++.+|+||+|+.... ..++...+.. . .
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 44555555544210 00 112223333444443 25899999999964211 1111111100 0 0
Q ss_pred CCCcEE-EEe-cCChhHh----hcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHH
Q 002700 286 NNASKV-VFT-TRSEEVC----GLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALIT 359 (890)
Q Consensus 286 ~~gs~I-iiT-tR~~~v~----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 359 (890)
...-+. ++. |+..... +-......+.|++++.+|...|+...-.. ..+ +..++|...+||+|.-+..
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~---~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQ---EQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCH---HHHHHHHHHHCCCHHHHHH
Confidence 011112 222 1111111 11223457899999999999998876322 112 2388999999999999999
Q ss_pred HHHHhcCC
Q 002700 360 VGRAMACK 367 (890)
Q Consensus 360 ~g~~l~~~ 367 (890)
++..+...
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99888753
No 146
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.76 E-value=0.00045 Score=75.74 Aligned_cols=172 Identities=16% Similarity=0.210 Sum_probs=96.1
Q ss_pred CcccchHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCH
Q 002700 156 PTVVGLQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRL 222 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 222 (890)
.++.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+++++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~------ 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVG------ 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEeh------
Confidence 3578999999888876631 235679999999999999999999876 2332 22211
Q ss_pred HHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCcc------------c----ccccccCCCC-CC
Q 002700 223 ENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRV------------D----LTKVGVPLPG-PQ 285 (890)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~l~~~l~~-~~ 285 (890)
..+. ... ...........+.......+.+|++|+++.-. . +..+...+.+ ..
T Consensus 213 s~l~----~k~-------~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 SEFV----QKY-------LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HHHH----HHh-------cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 1111 111 01111111122222234678999999975210 0 1111111110 12
Q ss_pred CCCcEEEEecCChhHhhc--c---cCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc
Q 002700 286 NNASKVVFTTRSEEVCGL--M---DAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP 354 (890)
Q Consensus 286 ~~gs~IiiTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 354 (890)
..+..||+||........ . .-+..+.++..+.++-..+|..+........+-++ .++++.+.|.-
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 245678888876543211 1 23456889999999988888877654332222233 34555665554
No 147
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.00051 Score=77.92 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=93.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL 256 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 256 (890)
...+.|+|..|+|||.|++++++.... ...-..+++++. .++..++...+.. .. ...+++.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHh
Confidence 346899999999999999999998621 111234555543 3344444433321 11 12233333
Q ss_pred ccCcEEEEEeccCCc---ccc-cccccCCCCCCCCCcEEEEecCCh---------hHhhcccCCCcEeccCCChHHHHHH
Q 002700 257 KEKKFVLLLDDLWQR---VDL-TKVGVPLPGPQNNASKVVFTTRSE---------EVCGLMDAQKKFKVACLSDIDAWEL 323 (890)
Q Consensus 257 ~~kr~LlVlDdv~~~---~~~-~~l~~~l~~~~~~gs~IiiTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 323 (890)
++ -=+|||||+... ..| +.+...+......|..|||||+.. .+.+.+...-++.+++.+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 33 347889999532 111 112222211123356688888753 2344555667899999999999999
Q ss_pred HHHHhcCcccCCChhHHHHHHHHHHHcCCcchH
Q 002700 324 FRQKVGEEALHSHPAILELAHTVAKECGGLPLA 356 (890)
Q Consensus 324 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 356 (890)
+.+++.......++ ++..-|++++.+..-.
T Consensus 455 L~kka~~r~l~l~~---eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 455 LRKKAVQEQLNAPP---EVLEFIASRISRNIRE 484 (617)
T ss_pred HHHHHHhcCCCCCH---HHHHHHHHhccCCHHH
Confidence 99888655433333 6677777777655433
No 148
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.0007 Score=77.99 Aligned_cols=190 Identities=13% Similarity=0.079 Sum_probs=103.5
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
..++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+..... ....-+. .+++.-..-+.+.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~~-------~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPDG-------EPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC-------CCCCccHHHHHHhcCCC
Confidence 4689999999999999987654 4577899999999999999987752 1110000 00000001111111100
Q ss_pred CCcccc---ccccHH---HHHHHHHH-HhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEE-ecCChhHhhc-
Q 002700 235 LLNDTW---KNRRIE---QKAQDIFR-ILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVF-TTRSEEVCGL- 303 (890)
Q Consensus 235 ~~~~~~---~~~~~~---~~~~~l~~-~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Iii-TtR~~~v~~~- 303 (890)
...... .....+ ++.+.+.. -..+++-++|+|++.. ...+..+...+. .......+|+ ||....+...
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLE-epp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLE-EPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhc-CCCCCeEEEEEeCChhhCcHHH
Confidence 000000 001111 11111111 0135667889999963 334555555554 2233444454 5444433221
Q ss_pred ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 304 MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
......+...+++.++....+...+.......+ .+....|++.++|.+..+
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 223356888999999998888877654432222 256778888888877543
No 149
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.73 E-value=0.00015 Score=79.96 Aligned_cols=171 Identities=18% Similarity=0.198 Sum_probs=95.2
Q ss_pred CcccchHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCH
Q 002700 156 PTVVGLQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRL 222 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 222 (890)
.++.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+++++.. ...| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se---- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE---- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch----
Confidence 3578999999998887631 134568899999999999999999986 3333 2222111
Q ss_pred HHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCcc----c------------ccccccCCCC-CC
Q 002700 223 ENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRV----D------------LTKVGVPLPG-PQ 285 (890)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----~------------~~~l~~~l~~-~~ 285 (890)
+. ... ...........+.....+.+.+|+||+++.-. + +..+...+.+ ..
T Consensus 253 --L~----~k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 --LI----QKY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred --hh----hhh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 11 110 01111111222222234578899999974210 0 0011111110 11
Q ss_pred CCCcEEEEecCChhHhhc-----ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCc
Q 002700 286 NNASKVVFTTRSEEVCGL-----MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGL 353 (890)
Q Consensus 286 ~~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 353 (890)
..+.+||+||........ ...+..+.++..+.++..++|..++.......+.++ ..++..+.|.
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~ 388 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDEL 388 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCC
Confidence 335678888876554321 122457899999999999999987654432222233 3444455444
No 150
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.72 E-value=1.7e-05 Score=80.95 Aligned_cols=86 Identities=26% Similarity=0.263 Sum_probs=42.9
Q ss_pred CCCCCCceEEEeccccccc----ccchhhccCCcceEEEcCCCCc----cccChh-------ccCccCCCEEEccCCCCC
Q 002700 534 IPTCPHLLTLFLNKNKLQM----IHNDFFQFMPSLKVLNLSHAEL----TELPVG-------IAQLVSLQHLDLSESDIS 598 (890)
Q Consensus 534 ~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~Lr~L~l~~~~l----~~lp~~-------i~~l~~L~~L~L~~~~l~ 598 (890)
...+..+..+++++|.+.. .....+.+.+.|+.-++++-.. .++|+. +-.+++|++||||.|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3445666777777776421 1122345556677777765411 133433 223445666666665443
Q ss_pred -----ccchhhhcCCCCcEEecCccc
Q 002700 599 -----ELPEELKALVNLKCLNLEWTR 619 (890)
Q Consensus 599 -----~lp~~~~~l~~L~~L~l~~~~ 619 (890)
.+-.-+.++..|++|.|.+|.
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCC
Confidence 111224455555555555554
No 151
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.71 E-value=4.3e-06 Score=85.17 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=42.6
Q ss_pred ccccccccceEeccccCCcceeEecCCCccccccCCCceEEEEecCCCCCCCCc-------ccCCCCccEEeeccccccc
Q 002700 715 ALADLKQLNELRISECKKLEELKIDYPGVVQRFVFHGLKKVDIVKCNKLKDLTF-------LAFAPNLKSIEVLGCVAME 787 (890)
Q Consensus 715 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-------l~~l~~L~~L~l~~c~~l~ 787 (890)
.+..+++|+.|++.++..... ...... .....+++|+.|.+.+|. +++=.. -...|+|+.|.+.+|..-.
T Consensus 208 al~~~~~LevLdl~DNtft~e-gs~~La-kaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLE-GSVALA-KALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HHHhCCcceeeecccchhhhH-HHHHHH-HHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 344556666666655432210 000000 111235566677776663 222110 1236777777777654211
Q ss_pred hhcccCcccccccccCCCCCCCcccEEecCCcc
Q 002700 788 EIVSVGKFAAVPEVTANLNPFAKLQNLKFFGVI 820 (890)
Q Consensus 788 ~i~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 820 (890)
+-.. .+.......|.|+.|.|.+|.
T Consensus 285 da~~--------~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 285 DAAL--------ALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHH--------HHHHHHhcchhhHHhcCCccc
Confidence 1000 011123346677777777653
No 152
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.67 E-value=7.1e-06 Score=72.11 Aligned_cols=107 Identities=20% Similarity=0.307 Sum_probs=83.4
Q ss_pred EEeeecccccccc----CCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCCEEEccCC
Q 002700 520 RISLMDNQITNLS----EIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSES 595 (890)
Q Consensus 520 ~l~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~ 595 (890)
.++++++.+..++ ......+|...++++|.++.+|+.+-.+++.+..|++++|.+..+|..+..++.|+.|+++.|
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC
Confidence 3445555444332 235567788888888888888888777788888899999988888988888889999999999
Q ss_pred CCCccchhhhcCCCCcEEecCccccccccchh
Q 002700 596 DISELPEELKALVNLKCLNLEWTRYLITIPRQ 627 (890)
Q Consensus 596 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 627 (890)
.+...|.-+..|.+|-.|+..++. ...+|-+
T Consensus 111 ~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 111 PLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred ccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 888888888888888888888776 5666654
No 153
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.66 E-value=0.00039 Score=77.92 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=90.0
Q ss_pred CcccchHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhhccCC---CCCCeEEEEEeCCc
Q 002700 156 PTVVGLQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRP---TNFSCVIWVVVSKD 219 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~ 219 (890)
..+.|.+..++++.+.+.- ...+-+.++|++|+|||++|+++++... .. ..+....++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~-~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA-QRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc-cccccccCCceeEEeccch
Confidence 3478899999998887631 1345689999999999999999999862 11 01223444444331
Q ss_pred cCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHh-ccCcEEEEEeccCCc---------cc-----ccccccCCCCC
Q 002700 220 LRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL-KEKKFVLLLDDLWQR---------VD-----LTKVGVPLPGP 284 (890)
Q Consensus 220 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~-----~~~l~~~l~~~ 284 (890)
.+ +...... .......+....++.. .+++++|+||+++.- .+ ...+...+.+.
T Consensus 261 ----eL----l~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 261 ----EL----LNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ----hh----cccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 11 1100000 0011112222222222 347899999999631 01 11222222211
Q ss_pred -CCCCcEEEEecCChhHhh-----cccCCCcEeccCCChHHHHHHHHHHhcC
Q 002700 285 -QNNASKVVFTTRSEEVCG-----LMDAQKKFKVACLSDIDAWELFRQKVGE 330 (890)
Q Consensus 285 -~~~gs~IiiTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 330 (890)
...+..||.||....... ...-+..+.++..+.++..++|..+...
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 123445666776554321 1122456899999999999999988653
No 154
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0013 Score=69.96 Aligned_cols=197 Identities=18% Similarity=0.211 Sum_probs=109.6
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCC------------CCCCeEEEEEeCCccCH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRP------------TNFSCVIWVVVSKDLRL 222 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------~~f~~~~wv~~s~~~~~ 222 (890)
..++|.+..++.+.+.+..+++ ....++|+.|+||+++|..+++...-.. ..+.-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 3589999999999999988764 7899999999999999999887752110 11122344432100000
Q ss_pred HHHHHHHHHHhCCCccccccccHHHHHHHHHHHh-----ccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEec
Q 002700 223 ENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL-----KEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTT 295 (890)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTt 295 (890)
..+-.+-++..+........-.+++ +..+.+.+ .+++-++|+|++.. ......+...+.+.. +..-|++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 0000111111111000000111222 22333333 35677999999853 334455555554223 343344444
Q ss_pred CChhHhh-cccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 296 RSEEVCG-LMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 296 R~~~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
+...+.. .......+.+.++++++..+.+.+...... . ......++..++|.|..+..+
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--L----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--c----hhHHHHHHHHcCCCHHHHHHH
Confidence 4444332 223446899999999999999987643211 0 111357889999999765543
No 155
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.66 E-value=0.00017 Score=86.35 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=88.6
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCC--CCC-CeEEEEEeCCccCHHHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRP--TNF-SCVIWVVVSKDLRLENIQETIGEK 232 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f-~~~~wv~~s~~~~~~~~~~~i~~~ 232 (890)
+.++||+++++++++.|......-+.++|++|+|||++|+.++++..... ..+ +..+|.. +...+. ..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~----a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL----AG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh----hh
Confidence 35899999999999999776666778999999999999999999862211 111 3344421 111111 10
Q ss_pred hCCCccccccccHHHHHHHHHHHh-ccCcEEEEEeccCCc----------ccc-cccccCCCCCCCCC-cEEEEecCChh
Q 002700 233 IGLLNDTWKNRRIEQKAQDIFRIL-KEKKFVLLLDDLWQR----------VDL-TKVGVPLPGPQNNA-SKVVFTTRSEE 299 (890)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~~-~~l~~~l~~~~~~g-s~IiiTtR~~~ 299 (890)
.. ...+.++....+.+.+ ..++.+|++|++..- .+. +.+...+. .| -++|-+|...+
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~----~g~i~~IgaTt~~e 322 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS----SGKLRCIGSTTYEE 322 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh----CCCeEEEEecCHHH
Confidence 00 1112233333444443 346899999998521 111 11233222 23 34454444322
Q ss_pred Hh-------hcccCCCcEeccCCChHHHHHHHHHHh
Q 002700 300 VC-------GLMDAQKKFKVACLSDIDAWELFRQKV 328 (890)
Q Consensus 300 v~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (890)
.. .....-..+.++.++.++..+++....
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11 001123478999999999999998654
No 156
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.63 E-value=0.00051 Score=68.19 Aligned_cols=46 Identities=26% Similarity=0.428 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHhh----cCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQVWRCLE----EESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..++|.|.+++.|++-.. .....-|.+||..|+|||++++++.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 568999999998876543 2355678889999999999999999987
No 157
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.63 E-value=8e-06 Score=91.47 Aligned_cols=123 Identities=33% Similarity=0.487 Sum_probs=77.3
Q ss_pred cccEEeeecccccc-ccCCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCCEEEccCC
Q 002700 517 NARRISLMDNQITN-LSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSES 595 (890)
Q Consensus 517 ~~~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~ 595 (890)
.+..+++..|.+.. ...+..+++|..|++.+|.+..+... +..+.+|++|++++|.|+.+. ++..+..|+.|++++|
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 34444455555554 23355667777777777776665442 456777777777777777765 5566677777777777
Q ss_pred CCCccchhhhcCCCCcEEecCccccccccch-hhhcCCcccccccccCcc
Q 002700 596 DISELPEELKALVNLKCLNLEWTRYLITIPR-QLVSNLSRLHVLRMFGAS 644 (890)
Q Consensus 596 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 644 (890)
.|..++. +..+.+|+.+++++|. +..++. . ...+.+|+.+.+.+..
T Consensus 151 ~i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 151 LISDISG-LESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred cchhccC-CccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCc
Confidence 7776643 4447777777777776 444443 1 2566666666665543
No 158
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.61 E-value=0.0026 Score=62.92 Aligned_cols=182 Identities=18% Similarity=0.206 Sum_probs=104.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeC-CccCHHHHHHHHHHHhCCCccccccccHHHHHHHHH
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVS-KDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIF 253 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 253 (890)
++.+++.++|.-|.|||+++++..... . + +.++-+.+. .......+...+...+..........-..+....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~-~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL-N--E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-C--C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 466799999999999999999666655 2 1 222224433 345677788888888876321111112233333444
Q ss_pred HHh-ccCc-EEEEEeccCCc--ccccccccCCC--CCC-CCCcEEEEe---cCCh---hHhhcc-cCCCc-EeccCCChH
Q 002700 254 RIL-KEKK-FVLLLDDLWQR--VDLTKVGVPLP--GPQ-NNASKVVFT---TRSE---EVCGLM-DAQKK-FKVACLSDI 318 (890)
Q Consensus 254 ~~l-~~kr-~LlVlDdv~~~--~~~~~l~~~l~--~~~-~~gs~IiiT---tR~~---~v~~~~-~~~~~-~~l~~L~~~ 318 (890)
... +++| ..+++||..+- ..++.++.... .+. +.=+.+++- -+.+ .+.... ....+ |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 444 5677 99999998532 23333322111 011 111222321 1110 111111 11223 899999999
Q ss_pred HHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 002700 319 DAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVG 361 (890)
Q Consensus 319 ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 361 (890)
+...++..+......+.+---.+....|.....|.|.+|..++
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 9999998887655322221224567888899999999998765
No 159
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0043 Score=70.07 Aligned_cols=157 Identities=22% Similarity=0.219 Sum_probs=89.9
Q ss_pred CcccchHHHHHHHHHHhhc------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETI 229 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 229 (890)
.+-+|.++.+++|++.|.- -..+++.++|++|+|||+|++.+++.. ...| +-++++.-.|..+|...=
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhcccc
Confidence 4459999999999999852 245799999999999999999999987 3334 334445444444432111
Q ss_pred HHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc------c---cccccc----------cCCCCCCCCCcE
Q 002700 230 GEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR------V---DLTKVG----------VPLPGPQNNASK 290 (890)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------~---~~~~l~----------~~l~~~~~~gs~ 290 (890)
-.-+| .-+...+..+. ..+.+.-+++||.++.- + .+-.+. .++. ..-.=|.
T Consensus 397 RTYIG--------amPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLe-v~yDLS~ 466 (782)
T COG0466 397 RTYIG--------AMPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLE-VPYDLSK 466 (782)
T ss_pred ccccc--------cCChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhcccc-Cccchhh
Confidence 11111 11111222222 12346678999998521 0 011111 1111 0111244
Q ss_pred EE-EecCC-hh-H-hhcccCCCcEeccCCChHHHHHHHHHHh
Q 002700 291 VV-FTTRS-EE-V-CGLMDAQKKFKVACLSDIDAWELFRQKV 328 (890)
Q Consensus 291 Ii-iTtR~-~~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (890)
|+ |||-+ -+ + +..++..+++++.+.+++|=.++-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44 44433 22 2 2334556899999999999888877765
No 160
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.55 E-value=2.4e-06 Score=94.50 Aligned_cols=180 Identities=17% Similarity=0.212 Sum_probs=104.1
Q ss_pred cCccccCcccccEEeeeccccccccCCCCC-CCceEEEecccc--ccccc----chhhc---cCCcceEEEcCCCCcccc
Q 002700 508 EAPEVKGWANARRISLMDNQITNLSEIPTC-PHLLTLFLNKNK--LQMIH----NDFFQ---FMPSLKVLNLSHAELTEL 577 (890)
Q Consensus 508 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~-~~L~~L~l~~~~--~~~~~----~~~~~---~l~~Lr~L~l~~~~l~~l 577 (890)
++-....+..+|+|-+.++++.....+..+ ..|..|...+.- +..+. .+ ++ .-..|.+.+.++|.+..+
T Consensus 101 ~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd-~~ns~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 101 EPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGD-ISNSPVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred CCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccc-cccchhhhhHhhhhcchhhHHhH
Confidence 344555667888888888876653332221 234444333211 10000 00 00 123467777788888777
Q ss_pred ChhccCccCCCEEEccCCCCCccchhhhcCCCCcEEecCccccccccchhhhcCCcccccccccCccccccccccccchh
Q 002700 578 PVGIAQLVSLQHLDLSESDISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVL 657 (890)
Q Consensus 578 p~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 657 (890)
-.++.-++.|+.|||++|+++..- .+..|.+|+||||++|. +..+|.--...+. |+.|.+.+..
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~------------- 243 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNA------------- 243 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccH-------------
Confidence 777777888888888888887764 67788888888888886 7777752122333 7777665432
Q ss_pred hhhhHHhhcCCCCCceEEEEecChhhHHhhhccccccccceeeeecccC
Q 002700 658 GELVVEELLGLKYLEVISFNLRSSRALQSFLSSHKLRSCIQALSLQHFK 706 (890)
Q Consensus 658 ~~~~~~~L~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 706 (890)
-..+..+.+|++|+.|+++.+-......+. ....+..|+.|.|.+++
T Consensus 244 -l~tL~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 244 -LTTLRGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -HHhhhhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCc
Confidence 223444556666666666644332222221 11224567888888765
No 161
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0013 Score=70.25 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=59.6
Q ss_pred cCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCChh-Hh-hcccCCCcEeccCCChHHHHHHHHHHhcCccc
Q 002700 258 EKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRSEE-VC-GLMDAQKKFKVACLSDIDAWELFRQKVGEEAL 333 (890)
Q Consensus 258 ~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~~~-v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 333 (890)
+++-++|+|+++. ......+...+. ....++.+|+||.+.. +. .....-..+.+.+++.+++.+.+.......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LE-EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLE-EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHh-CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC--
Confidence 3444567799863 344555555554 3334667777776654 32 222334678999999999999997654211
Q ss_pred CCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 334 HSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 334 ~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
. .+.+..++..++|.|..+..+
T Consensus 182 --~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --D---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 234567789999999765544
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.54 E-value=0.00064 Score=82.57 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=88.2
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCC--CCC-CeEEEEEeCCccCHHHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRP--TNF-SCVIWVVVSKDLRLENIQETIGEK 232 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f-~~~~wv~~s~~~~~~~~~~~i~~~ 232 (890)
..++||+++++++++.|......-+.++|++|+|||++|+.++....... ... +..+|. + +...++ .
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c-
Confidence 35799999999999999876556677999999999999999988862111 111 234442 1 221111 1
Q ss_pred hCCCccccccccHHHHHHHHHHHh-ccCcEEEEEeccCCc---------cccccc-ccCCCCCCCCCcEEEEecCChhHh
Q 002700 233 IGLLNDTWKNRRIEQKAQDIFRIL-KEKKFVLLLDDLWQR---------VDLTKV-GVPLPGPQNNASKVVFTTRSEEVC 301 (890)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~l-~~~l~~~~~~gs~IiiTtR~~~v~ 301 (890)
+.. ...+.++....+.+.+ ..++.+|++|++..- .+...+ ...+. . ..-++|.+|......
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--r-g~l~~IgaTt~~ey~ 320 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--R-GELQCIGATTLDEYR 320 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--C-CCcEEEEeCCHHHHH
Confidence 111 1122333333343333 357899999998421 111122 22221 1 124555555544431
Q ss_pred h-------cccCCCcEeccCCChHHHHHHHHHH
Q 002700 302 G-------LMDAQKKFKVACLSDIDAWELFRQK 327 (890)
Q Consensus 302 ~-------~~~~~~~~~l~~L~~~ea~~Lf~~~ 327 (890)
. .......+.++..+.++...++...
T Consensus 321 ~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 321 KHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1 1112346788889999988888653
No 163
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.53 E-value=0.0015 Score=74.79 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=92.4
Q ss_pred CcccchHHHHHHHHHHhh---c---------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH
Q 002700 156 PTVVGLQLQLEQVWRCLE---E---------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE 223 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (890)
.+++|.+..++++.+.+. . ...+-+.++|++|+|||++|+++++.. ...| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----H
Confidence 357888877766655442 1 123468899999999999999999875 2222 22221 1
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc----cc--------c----cccccCCCC-CCC
Q 002700 224 NIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR----VD--------L----TKVGVPLPG-PQN 286 (890)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----~~--------~----~~l~~~l~~-~~~ 286 (890)
.+.. .. .......+...+.......+.+|+|||++.- .. . ..+...+.+ ...
T Consensus 123 ~~~~----~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVE----MF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHH----HH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111 10 0111122222233333456789999998531 00 0 111111110 122
Q ss_pred CCcEEEEecCChhH-----hhcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc
Q 002700 287 NASKVVFTTRSEEV-----CGLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP 354 (890)
Q Consensus 287 ~gs~IiiTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 354 (890)
.+..||.||..... .....-+..+.++..+.++-.++|...+.......+. ....+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~----~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDV----DLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcch----hHHHHHHhCCCCC
Confidence 34556667765532 1111234578899999988889998876543322121 2346777777643
No 164
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.51 E-value=0.00032 Score=75.45 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=20.2
Q ss_pred CcccEEecCCcccccccccCCCCCCCccEEeecCC
Q 002700 809 AKLQNLKFFGVINLKSIYWKPLPFPNLKSMSFLHC 843 (890)
Q Consensus 809 ~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~C 843 (890)
++|+.|.+.+|..+. +|.. --++|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i~-LP~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEK--LPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cccc--ccccCcEEEeccc
Confidence 478888888877553 2211 1257888887664
No 165
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00097 Score=68.87 Aligned_cols=181 Identities=18% Similarity=0.223 Sum_probs=104.3
Q ss_pred cccchHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH
Q 002700 157 TVVGLQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE 223 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (890)
.+=|-++++++|.+...- +..+=|.+||++|.|||-||++|+++. ...| +.|.. .
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----Irvvg----S 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVG----S 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEecc----H
Confidence 356789999999887641 256779999999999999999999986 3333 22221 1
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHh-ccCcEEEEEeccCCc-------------cc---ccccccCCCC-CC
Q 002700 224 NIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL-KEKKFVLLLDDLWQR-------------VD---LTKVGVPLPG-PQ 285 (890)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~-------------~~---~~~l~~~l~~-~~ 285 (890)
++ .+..-.. -..++..+.+.- ...+..|.+|.++.- +. .-.+...+.+ +.
T Consensus 220 El----VqKYiGE--------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 EL----VQKYIGE--------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred HH----HHHHhcc--------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 11 1111110 112333333333 357899999988521 00 1112222221 23
Q ss_pred CCCcEEEEecCChhHh-----hcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc----hH
Q 002700 286 NNASKVVFTTRSEEVC-----GLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP----LA 356 (890)
Q Consensus 286 ~~gs~IiiTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP----La 356 (890)
...-|||..|...++. ..-.-+..++++.-+.+.=.++|+-++.......+-+++ .+++.|.|.- -|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHH
Confidence 3457899988776653 222235678888666666667788777665544444444 4555666654 34
Q ss_pred HHHHHHHhc
Q 002700 357 LITVGRAMA 365 (890)
Q Consensus 357 i~~~g~~l~ 365 (890)
+.+=|++++
T Consensus 364 ictEAGm~A 372 (406)
T COG1222 364 ICTEAGMFA 372 (406)
T ss_pred HHHHHhHHH
Confidence 444455554
No 166
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.48 E-value=0.00067 Score=82.27 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=41.1
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..++||+.++.++++.|......-+.++|.+|+|||++|+.++...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999987666677799999999999999999886
No 167
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.47 E-value=0.00046 Score=63.54 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002700 180 VGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 180 v~I~G~gGiGKTtLa~~v~~~~ 201 (890)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999987
No 168
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.46 E-value=0.00018 Score=68.08 Aligned_cols=102 Identities=30% Similarity=0.454 Sum_probs=75.8
Q ss_pred cccEEeeeccccccccCCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccC--hhccCccCCCEEEccC
Q 002700 517 NARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELP--VGIAQLVSLQHLDLSE 594 (890)
Q Consensus 517 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~l~~L~~L~L~~ 594 (890)
+...+++.+|++..++.++.++.|.+|.+.+|.++.+.+..-..+++|..|.|.+|++.++. ..+..++.|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 55667888888888888888888888888888888888776667778888888888877653 2345677888888888
Q ss_pred CCCCccch----hhhcCCCCcEEecCcc
Q 002700 595 SDISELPE----ELKALVNLKCLNLEWT 618 (890)
Q Consensus 595 ~~l~~lp~----~~~~l~~L~~L~l~~~ 618 (890)
|.+++.+. -++++++|++||+.+-
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhh
Confidence 87765543 2566677777776543
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.43 E-value=0.00063 Score=82.84 Aligned_cols=154 Identities=16% Similarity=0.214 Sum_probs=86.7
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCC----CCeEEEEEeCCccCHHHHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTN----FSCVIWVVVSKDLRLENIQETIGE 231 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~ 231 (890)
..++||+.++.+++..|......-+.++|.+|+|||++|..++.+... ... ....+|.. ++..+. .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l-----~~~~l~----a 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLAL-----DMGALI----A 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEe-----eHHHHh----h
Confidence 358999999999999997766667778999999999999999888621 111 12223221 111111 0
Q ss_pred HhCCCccccccccHHHHHHHHHHHhc--cCcEEEEEeccCCcc---------cccc-cccCCCCCCCCCcEEEEecCChh
Q 002700 232 KIGLLNDTWKNRRIEQKAQDIFRILK--EKKFVLLLDDLWQRV---------DLTK-VGVPLPGPQNNASKVVFTTRSEE 299 (890)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---------~~~~-l~~~l~~~~~~gs~IiiTtR~~~ 299 (890)
+.. ...+.+.....+.+.+. +++.+|++|++..-. +... ++..+. .+ .-++|-+|....
T Consensus 243 --~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g-~i~~IgaTt~~e 313 (852)
T TIGR03346 243 --GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RG-ELHCIGATTLDE 313 (852)
T ss_pred --cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cC-ceEEEEeCcHHH
Confidence 000 01122233333333332 468999999985211 1112 222221 11 234554554443
Q ss_pred Hhh-------cccCCCcEeccCCChHHHHHHHHHHh
Q 002700 300 VCG-------LMDAQKKFKVACLSDIDAWELFRQKV 328 (890)
Q Consensus 300 v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (890)
.-. ....-..+.++..+.++...++....
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 211 11123467899999999999987653
No 170
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.0015 Score=70.41 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=85.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCC--eEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFS--CVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIF 253 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 253 (890)
....+.|||..|.|||.|++++.+.. ..... .++.++ .+....+++..+. +.....++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~------se~f~~~~v~a~~-----------~~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLT------SEDFTNDFVKALR-----------DNEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEecc------HHHHHHHHHHHHH-----------hhhHHHHH
Confidence 36799999999999999999999997 23333 233332 2233333333321 11233455
Q ss_pred HHhccCcEEEEEeccCCc---cc-ccccccCCCCCCCCCcEEEEecCChh---------HhhcccCCCcEeccCCChHHH
Q 002700 254 RILKEKKFVLLLDDLWQR---VD-LTKVGVPLPGPQNNASKVVFTTRSEE---------VCGLMDAQKKFKVACLSDIDA 320 (890)
Q Consensus 254 ~~l~~kr~LlVlDdv~~~---~~-~~~l~~~l~~~~~~gs~IiiTtR~~~---------v~~~~~~~~~~~l~~L~~~ea 320 (890)
+.. .-=++++||++-- +. -+.+...+......|-.||+|++... +.+.+...-++.+.+.+.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 555 3348889998531 11 12222222212234558999996542 344555667899999999999
Q ss_pred HHHHHHHhcCcccCCCh
Q 002700 321 WELFRQKVGEEALHSHP 337 (890)
Q Consensus 321 ~~Lf~~~~~~~~~~~~~ 337 (890)
..++.+++.......++
T Consensus 250 ~aiL~kka~~~~~~i~~ 266 (408)
T COG0593 250 LAILRKKAEDRGIEIPD 266 (408)
T ss_pred HHHHHHHHHhcCCCCCH
Confidence 99999877655544444
No 171
>PRK08116 hypothetical protein; Validated
Probab=97.42 E-value=0.00024 Score=73.85 Aligned_cols=103 Identities=23% Similarity=0.252 Sum_probs=57.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhc
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILK 257 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 257 (890)
..+.++|.+|+|||.||.++++... .....+++++ ..+++..+....... ...+. ..+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~~----~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSS----GKEDE----NEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhcc----ccccH----HHHHHHhc
Confidence 4589999999999999999999972 2234456664 334455554443211 11111 22334444
Q ss_pred cCcEEEEEeccC--Ccccccc--cccCCCCCCCCCcEEEEecCCh
Q 002700 258 EKKFVLLLDDLW--QRVDLTK--VGVPLPGPQNNASKVVFTTRSE 298 (890)
Q Consensus 258 ~kr~LlVlDdv~--~~~~~~~--l~~~l~~~~~~gs~IiiTtR~~ 298 (890)
+-. ||||||+. ...+|.. +...+......|..+||||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 434 89999994 2233332 2222211123456689998643
No 172
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=6.9e-06 Score=90.98 Aligned_cols=125 Identities=27% Similarity=0.367 Sum_probs=86.6
Q ss_pred CcccccEEeeeccccccccC-CCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChh-ccCccCCCEEE
Q 002700 514 GWANARRISLMDNQITNLSE-IPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVG-IAQLVSLQHLD 591 (890)
Q Consensus 514 ~~~~~~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~l~~L~~L~ 591 (890)
.|.++...++..|.+..+++ +.-++.|+.|+|+.|++.... ++..+++|+.|||++|.+..+|.- ...+ +|+.|+
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeee
Confidence 35567777777777665543 344678888888888876664 577888888888888888877632 2223 388888
Q ss_pred ccCCCCCccchhhhcCCCCcEEecCccccccccch-hhhcCCcccccccccCc
Q 002700 592 LSESDISELPEELKALVNLKCLNLEWTRYLITIPR-QLVSNLSRLHVLRMFGA 643 (890)
Q Consensus 592 L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~ 643 (890)
+++|.+++| ..+.+|.+|+.||+++|- +..... ..++.|..|+.|++.+.
T Consensus 239 lrnN~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 239 LRNNALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ecccHHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCC
Confidence 888888877 467888888888888774 332211 11566777788877764
No 173
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.41 E-value=0.0015 Score=77.34 Aligned_cols=155 Identities=18% Similarity=0.280 Sum_probs=88.5
Q ss_pred cccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCC---CCeEEEEEeCCccCHHHHHHHHHHHh
Q 002700 157 TVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTN---FSCVIWVVVSKDLRLENIQETIGEKI 233 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~~~l 233 (890)
.++||++++.++++.|......-+.++|.+|+|||++|+.++.......-. .++.+|.. +...+ +.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--
Confidence 589999999999999877555566789999999999999999875221111 24444421 11111 10
Q ss_pred CCCccccccccHHHHHHHHHHHh-ccCcEEEEEeccCCc----------ccccccccCCCCCCCCCcEEEEecCChhHhh
Q 002700 234 GLLNDTWKNRRIEQKAQDIFRIL-KEKKFVLLLDDLWQR----------VDLTKVGVPLPGPQNNASKVVFTTRSEEVCG 302 (890)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~~ 302 (890)
+.. ...+.++....+.+.+ +.++.+|++|++..- .+...+..++. . ...-+||-+|...+...
T Consensus 256 G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-~-~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-S-SGKIRVIGSTTYQEFSN 329 (758)
T ss_pred ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-h-CCCeEEEecCChHHHHH
Confidence 000 1112233333343334 346789999998521 11222222221 1 12344555554433211
Q ss_pred c-------ccCCCcEeccCCChHHHHHHHHHHh
Q 002700 303 L-------MDAQKKFKVACLSDIDAWELFRQKV 328 (890)
Q Consensus 303 ~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (890)
. ...-..+.++.++.+++.+++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0 1122478999999999999998654
No 174
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.41 E-value=0.0026 Score=70.22 Aligned_cols=163 Identities=19% Similarity=0.211 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHHhCCCccc
Q 002700 161 LQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDL-RLENIQETIGEKIGLLNDT 239 (890)
Q Consensus 161 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~ 239 (890)
|..-..++.+.+..... ++.|.|+-++||||+++.+.... ... .+++..-+.. +...+
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-------------- 80 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-------------- 80 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH--------------
Confidence 33445555555544333 99999999999999997776665 222 4444322211 11110
Q ss_pred cccccHHHHHHHHHHHhccCcEEEEEeccCCcccccccccCCCCCCCCCcEEEEecCChhHhh-----c-ccCCCcEecc
Q 002700 240 WKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCG-----L-MDAQKKFKVA 313 (890)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~~-----~-~~~~~~~~l~ 313 (890)
.+....+.+.-..++..|+||.|....+|......+. +.++. +|++|+-+..+.. . .+....+.+.
T Consensus 81 ------~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~-d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~ 152 (398)
T COG1373 81 ------LDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLY-DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELY 152 (398)
T ss_pred ------HHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHH-ccccc-eEEEECCchhhhccchhhhcCCCceeEEEC
Confidence 1111111111112778999999999999998877776 55555 8888888776532 1 1334678999
Q ss_pred CCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHH
Q 002700 314 CLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALIT 359 (890)
Q Consensus 314 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 359 (890)
||+..|-..+-...+ .. ... +..-+-.-..||.|-++..
T Consensus 153 PlSF~Efl~~~~~~~-----~~-~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 153 PLSFREFLKLKGEEI-----EP-SKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred CCCHHHHHhhccccc-----ch-hHH-HHHHHHHHHhCCCcHHHhC
Confidence 999999776543000 00 011 1122223356899987754
No 175
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0047 Score=65.39 Aligned_cols=180 Identities=14% Similarity=0.093 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCCCCe-----EEEEEeCCccCHHHHHHHHHHHhCCC
Q 002700 163 LQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSC-----VIWVVVSKDLRLENIQETIGEKIGLL 236 (890)
Q Consensus 163 ~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-----~~wv~~s~~~~~~~~~~~i~~~l~~~ 236 (890)
...+.+...+..+++. .+.++|+.|+||+++|..++.... -.....+ +-|+..+..+|+..+. ..+
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll-C~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~p 82 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL-ASGPDPAAAQRTRQLIAAGTHPDLQLVS-------FIP 82 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh-CCCCCCCCcchHHHHHhcCCCCCEEEEe-------cCC
Confidence 3456677777666544 688999999999999999887652 1110100 0000001111100000 000
Q ss_pred cccc----ccccHHHHHHHHHHHh-----ccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCCh-hHhhc-
Q 002700 237 NDTW----KNRRIEQKAQDIFRIL-----KEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRSE-EVCGL- 303 (890)
Q Consensus 237 ~~~~----~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~~-~v~~~- 303 (890)
.... ..-.+++. ..+.+.+ .+++-++|+|+++. ...-..+...+. ....++.+|++|.+. .+...
T Consensus 83 ~~~~~k~~~~I~idqI-R~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 83 NRTGDKLRTEIVIEQV-REISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLE-EPSPGRYLWLISAQPARLPATI 160 (319)
T ss_pred CcccccccccccHHHH-HHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhh-CCCCCCeEEEEECChhhCchHH
Confidence 0000 00112221 2222222 24667999999863 333444444444 333466666666544 33322
Q ss_pred ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 002700 304 MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVG 361 (890)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 361 (890)
...-..+.+.+++.+++.+.+... + .+ .+.+..++..++|.|+....+.
T Consensus 161 rSRCq~i~~~~~~~~~~~~~L~~~-~-----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 161 RSRCQRLEFKLPPAHEALAWLLAQ-G-----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HhhheEeeCCCcCHHHHHHHHHHc-C-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 223457889999999999888653 1 11 1236678999999998765443
No 176
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.37 E-value=0.0078 Score=72.78 Aligned_cols=46 Identities=30% Similarity=0.322 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHhhc------CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQVWRCLEE------ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..++|.++.+++|.+++.. ....++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999887642 234589999999999999999999987
No 177
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.37 E-value=3.8e-05 Score=86.09 Aligned_cols=105 Identities=28% Similarity=0.417 Sum_probs=90.8
Q ss_pred ccCcccccEEeeeccccccccC-CCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCCEE
Q 002700 512 VKGWANARRISLMDNQITNLSE-IPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHL 590 (890)
Q Consensus 512 ~~~~~~~~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L 590 (890)
...+.++..+++.+|.+..+.. +..+++|++|++++|.+..+.. +..+..|+.|++++|.++.++ .+..+..|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 4456689999999999999888 8889999999999999887765 567888999999999998876 56668999999
Q ss_pred EccCCCCCccchh-hhcCCCCcEEecCccc
Q 002700 591 DLSESDISELPEE-LKALVNLKCLNLEWTR 619 (890)
Q Consensus 591 ~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 619 (890)
++++|.+..++.. ...+.+|+.+.+.++.
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 9999999988765 5889999999999886
No 178
>CHL00176 ftsH cell division protein; Validated
Probab=97.37 E-value=0.002 Score=74.90 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=94.3
Q ss_pred CcccchHHHHHHHHHHh---hcC---------CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH
Q 002700 156 PTVVGLQLQLEQVWRCL---EEE---------SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE 223 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L---~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (890)
.+++|.++.++++.+.+ ... ..+-|.++|++|+|||++|+++++.. ... ++.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 45788887766665543 321 24568999999999999999998875 222 2222211
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc------------c----cccccccCCCC-CCC
Q 002700 224 NIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR------------V----DLTKVGVPLPG-PQN 286 (890)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------------~----~~~~l~~~l~~-~~~ 286 (890)
.+.. .. ...........+.......+++|++||++.- . .+..+...+.+ ...
T Consensus 251 ~f~~----~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVE----MF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHH----Hh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 1110 00 0001112222333444568899999999521 0 11122222210 123
Q ss_pred CCcEEEEecCChhHhh-----cccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC
Q 002700 287 NASKVVFTTRSEEVCG-----LMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGG 352 (890)
Q Consensus 287 ~gs~IiiTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 352 (890)
.+..||.||....... ...-+..+.++..+.++-.++++.++....... ......+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP----DVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch----hHHHHHHHhcCCC
Confidence 4556777776654322 112245788888999999999988876532111 2234667777776
No 179
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=0.00015 Score=84.96 Aligned_cols=104 Identities=18% Similarity=0.350 Sum_probs=77.7
Q ss_pred ccccEEeeecccccc--c-cC-CCCCCCceEEEecccccccc-cchhhccCCcceEEEcCCCCccccChhccCccCCCEE
Q 002700 516 ANARRISLMDNQITN--L-SE-IPTCPHLLTLFLNKNKLQMI-HNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHL 590 (890)
Q Consensus 516 ~~~~~l~l~~~~~~~--~-~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L 590 (890)
.++++|++.+...-. . .. ...+|.|++|.+.+-.+..- ....+.++++|+.||+|+++++.+ .+|++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 489999998753321 1 11 23479999999988664322 233467899999999999999988 699999999999
Q ss_pred EccCCCCCccc--hhhhcCCCCcEEecCcccc
Q 002700 591 DLSESDISELP--EELKALVNLKCLNLEWTRY 620 (890)
Q Consensus 591 ~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~ 620 (890)
.+++-.+..-+ ..+.+|++|++||+|....
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 99887666432 3577899999999998764
No 180
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=0.00012 Score=85.73 Aligned_cols=104 Identities=23% Similarity=0.290 Sum_probs=58.1
Q ss_pred CCceEEEecccc--cccccchhhccCCcceEEEcCCCCcc--ccChhccCccCCCEEEccCCCCCccchhhhcCCCCcEE
Q 002700 538 PHLLTLFLNKNK--LQMIHNDFFQFMPSLKVLNLSHAELT--ELPVGIAQLVSLQHLDLSESDISELPEELKALVNLKCL 613 (890)
Q Consensus 538 ~~L~~L~l~~~~--~~~~~~~~~~~l~~Lr~L~l~~~~l~--~lp~~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 613 (890)
.+|+.|++.|.. ...++...-..+++|+.|.+++-.+. .+-.-..++++|..||+++++++.+ ..+++|+||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 466667776654 23344444455677777777765433 2222334566777777777777766 567777777777
Q ss_pred ecCccccccccch-hhhcCCcccccccccCc
Q 002700 614 NLEWTRYLITIPR-QLVSNLSRLHVLRMFGA 643 (890)
Q Consensus 614 ~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~ 643 (890)
.+.+-. ...-.. ..+-+|++|+.|+++..
T Consensus 201 ~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLE-FESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCC-CCchhhHHHHhcccCCCeeecccc
Confidence 665433 121110 01445666666666543
No 181
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.005 Score=66.33 Aligned_cols=159 Identities=7% Similarity=0.041 Sum_probs=85.4
Q ss_pred cccc-hHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 157 TVVG-LQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 157 ~~vG-r~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
.++| -+..++.+.+.+..+++. ...++|+.|+||||+|+.+.+...- ....... .++.. ..-+.+... .
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~---~cg~C----~~c~~~~~~-~ 76 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE---PCGTC----TNCKRIDSG-N 76 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC---CCCcC----HHHHHHhcC-C
Confidence 4567 777788888888776544 6699999999999999999877521 1100000 00000 000000000 0
Q ss_pred CCc-----cccccccHHHHHHHHHHH-----hccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCChh-Hh
Q 002700 235 LLN-----DTWKNRRIEQKAQDIFRI-----LKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRSEE-VC 301 (890)
Q Consensus 235 ~~~-----~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~~~-v~ 301 (890)
-++ .......+++..+. .+. ..+.+-++|+|++.. ......+...+. ....++.+|++|.+.. +.
T Consensus 77 hpD~~~i~~~~~~i~id~ir~l-~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LE-EPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 77 HPDVHLVAPDGQSIKKDQIRYL-KEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLE-EPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCEEEeccccccCCHHHHHHH-HHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhc-CCCCCceEEEEeCChHhCc
Confidence 000 00001112222221 122 234556799999853 233445555554 3345666776665543 32
Q ss_pred h-cccCCCcEeccCCChHHHHHHHHH
Q 002700 302 G-LMDAQKKFKVACLSDIDAWELFRQ 326 (890)
Q Consensus 302 ~-~~~~~~~~~l~~L~~~ea~~Lf~~ 326 (890)
. .......+++.++++++..+.+.+
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 2 223346889999999999888865
No 182
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0028 Score=69.81 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=60.0
Q ss_pred CcccchHHHHHHHHHHhhc------------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE------------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE 223 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (890)
.++=|.++.+.++.+++.. ...+-|.++|++|+|||.||++++++. .-.| +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeecch----
Confidence 3567899998888887742 135678999999999999999999987 2222 222221
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccC
Q 002700 224 NIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLW 269 (890)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 269 (890)
+|+... .+.+++.+.+.+.+....-++++++|+++
T Consensus 258 ----eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ----EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ----hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 222222 22333444444445556789999999985
No 183
>PRK08118 topology modulation protein; Reviewed
Probab=97.28 E-value=0.00016 Score=69.39 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=29.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEE
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIW 213 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 213 (890)
..|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987322356787776
No 184
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.24 E-value=0.00096 Score=62.14 Aligned_cols=87 Identities=20% Similarity=0.113 Sum_probs=47.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhc
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILK 257 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 257 (890)
..+.|+|++|+||||+|+.++... ......++.+..+........... ....... . ...........+.+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGK--K-ASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhhcc--C-CCCCHHHHHHHHHHHHH
Confidence 578999999999999999999887 222234555555443322222111 0000000 0 11222223334444444
Q ss_pred cC-cEEEEEeccCCc
Q 002700 258 EK-KFVLLLDDLWQR 271 (890)
Q Consensus 258 ~k-r~LlVlDdv~~~ 271 (890)
.. ..+|++|++...
T Consensus 76 ~~~~~viiiDei~~~ 90 (148)
T smart00382 76 KLKPDVLILDEITSL 90 (148)
T ss_pred hcCCCEEEEECCccc
Confidence 43 499999999754
No 185
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.21 E-value=0.0015 Score=75.29 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=39.3
Q ss_pred CcccchHHHHHHHHHHhhcC-----CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQVWRCLEEE-----SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-----~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..++|.++.++++..++... ..+++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999998652 34579999999999999999998875
No 186
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.21 E-value=0.0023 Score=68.24 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=65.3
Q ss_pred HHHHHHHhhc-CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCe-EEEEEeCC-ccCHHHHHHHHHHHhCCCccccc
Q 002700 165 LEQVWRCLEE-ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSC-VIWVVVSK-DLRLENIQETIGEKIGLLNDTWK 241 (890)
Q Consensus 165 ~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~ 241 (890)
..++++.+.. +...-+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+ ..+..++.+.+...+.....+..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3446777654 4456779999999999999999998862 223344 46766665 44678888888776654321101
Q ss_pred c---ccHHHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 242 N---RRIEQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 242 ~---~~~~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
. .........+.+++ ++++++||+|++.
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1 11111222333333 5799999999983
No 187
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0059 Score=66.12 Aligned_cols=145 Identities=21% Similarity=0.221 Sum_probs=88.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRI 255 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (890)
+...+.+.|++|+|||+||..++.. ..|..+--++. + +....++......+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSp------e---------------~miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISP------E---------------DMIGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeCh------H---------------HccCccHHHHHHHHHHH
Confidence 4567889999999999999999876 34544332211 1 11223334444444444
Q ss_pred h----ccCcEEEEEeccCCcccccccccCC------------CCCCCCCcE--EEEecCChhHhhcccC----CCcEecc
Q 002700 256 L----KEKKFVLLLDDLWQRVDLTKVGVPL------------PGPQNNASK--VVFTTRSEEVCGLMDA----QKKFKVA 313 (890)
Q Consensus 256 l----~~kr~LlVlDdv~~~~~~~~l~~~l------------~~~~~~gs~--IiiTtR~~~v~~~~~~----~~~~~l~ 313 (890)
+ +..-..||+||+..-.+|-.+++.+ ......|-| |+-||....|...|+. ...|.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 3 5566899999997666666554332 111223444 4458888888877753 3578899
Q ss_pred CCCh-HHHHHHHHHHhcCcccCCChhHHHHHHHHHHHc
Q 002700 314 CLSD-IDAWELFRQKVGEEALHSHPAILELAHTVAKEC 350 (890)
Q Consensus 314 ~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 350 (890)
.++. ++..+.++..-- -.+.+...++.+...+|
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 9987 777777765421 12334455666666666
No 188
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.013 Score=62.34 Aligned_cols=173 Identities=10% Similarity=0.082 Sum_probs=94.6
Q ss_pred HHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCCCCC---Ce-E----EEEEeCCccCHHHHHHHHHHHhC
Q 002700 164 QLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRPTNF---SC-V----IWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 164 ~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~-~----~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
.-+.+.+.+..+++ ....+.|+.|+||+++|..++.... -.... .| . -++..+..+|+..+.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll-C~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------- 80 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM-CQTPQGDQPCGQCHSCHLFQAGNHPDFHILE-------- 80 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc--------
Confidence 34556666766554 5777999999999999999987762 11100 00 0 000011111111000
Q ss_pred CCccccccccHHHHHHHHHHHh-----ccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCCh-hHhhc-cc
Q 002700 235 LLNDTWKNRRIEQKAQDIFRIL-----KEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRSE-EVCGL-MD 305 (890)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~~-~v~~~-~~ 305 (890)
+ .....-.+++.. .+.+.+ .+++-++|+|+++. ......+...+. ....++.+|++|.+. .+... ..
T Consensus 81 -p-~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLE-EPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 81 -P-IDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLE-EPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred -c-ccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhCchHHHh
Confidence 0 000011222222 222222 35666888999863 344555555554 334456666666554 44322 23
Q ss_pred CCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 306 AQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
.-..+.+.+++++++.+.+....... . ..+...+..++|.|+.+
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~~-----~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSAE-----I---SEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhccC-----h---HHHHHHHHHcCCCHHHH
Confidence 34688999999999999887764211 1 23556788899999644
No 189
>PRK10536 hypothetical protein; Provisional
Probab=97.17 E-value=0.00092 Score=67.30 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=39.9
Q ss_pred cccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEE
Q 002700 157 TVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIW 213 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 213 (890)
.+.+|......+..++.+. .+|.+.|.+|+|||+||.++..+.. ....|+.++-
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l-~~~~~~kIiI 109 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEAL-IHKDVDRIIV 109 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHH-hcCCeeEEEE
Confidence 3567888888888888654 5999999999999999999888631 1233554443
No 190
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.15 E-value=0.0071 Score=64.55 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=28.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVV 216 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 216 (890)
...+.++|.+|+|||+||.++++... .....++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH
Confidence 37799999999999999999999872 22335666654
No 191
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.14 E-value=0.0016 Score=65.35 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=30.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVV 216 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 216 (890)
-.++|+|..|+||||++..+.... ...|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 367899999999999999999876 577888877754
No 192
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.00061 Score=68.17 Aligned_cols=85 Identities=21% Similarity=0.246 Sum_probs=57.2
Q ss_pred CCCCCceEEEeccccccccc--chhhccCCcceEEEcCCCCccccChhc-cCccCCCEEEccCCCCC--ccchhhhcCCC
Q 002700 535 PTCPHLLTLFLNKNKLQMIH--NDFFQFMPSLKVLNLSHAELTELPVGI-AQLVSLQHLDLSESDIS--ELPEELKALVN 609 (890)
Q Consensus 535 ~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~l~~L~~L~L~~~~l~--~lp~~~~~l~~ 609 (890)
..+..++.+++.+|.+..+. ..++.+|++|++|+++.|.+..--.+. -.+.+|++|-|.++.+. ..-..+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 34677888888888766554 234678888888888888665321121 34678888888887553 55556677777
Q ss_pred CcEEecCccc
Q 002700 610 LKCLNLEWTR 619 (890)
Q Consensus 610 L~~L~l~~~~ 619 (890)
++.|+++.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 7777777763
No 193
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.11 E-value=0.0001 Score=64.98 Aligned_cols=102 Identities=27% Similarity=0.372 Sum_probs=79.1
Q ss_pred CceEEEecccccccccc--hhhccCCcceEEEcCCCCccccChhccCc-cCCCEEEccCCCCCccchhhhcCCCCcEEec
Q 002700 539 HLLTLFLNKNKLQMIHN--DFFQFMPSLKVLNLSHAELTELPVGIAQL-VSLQHLDLSESDISELPEELKALVNLKCLNL 615 (890)
Q Consensus 539 ~L~~L~l~~~~~~~~~~--~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l-~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l 615 (890)
.+-.++++.|.+-.++. ..+....+|...+|++|.++++|+.+... +.+.+|++.+|.|..+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34456677776544432 23556678999999999999999887654 4889999999999999999999999999999
Q ss_pred CccccccccchhhhcCCcccccccccC
Q 002700 616 EWTRYLITIPRQLVSNLSRLHVLRMFG 642 (890)
Q Consensus 616 ~~~~~l~~lp~~~i~~l~~L~~L~l~~ 642 (890)
+.|. +...|.- +..|.+|-.|+..+
T Consensus 108 ~~N~-l~~~p~v-i~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 108 RFNP-LNAEPRV-IAPLIKLDMLDSPE 132 (177)
T ss_pred ccCc-cccchHH-HHHHHhHHHhcCCC
Confidence 9997 6777764 55677777666543
No 194
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.11 E-value=0.0037 Score=59.64 Aligned_cols=136 Identities=16% Similarity=0.171 Sum_probs=72.3
Q ss_pred chHHHHHHHHHHhhcCCee-EEEEEcCCCChHHHHHHHHHhhhccCCC-----------------CCCeEEEEEeCCc--
Q 002700 160 GLQLQLEQVWRCLEEESVG-IVGLYGMGGVGKTTLLTHINNKFLQRPT-----------------NFSCVIWVVVSKD-- 219 (890)
Q Consensus 160 Gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~f~~~~wv~~s~~-- 219 (890)
|-+...+.+.+.+..++.. .+.++|..|+||+|+|..+++...-... ...-+.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5567778888888777655 6899999999999999999887621111 1122333322211
Q ss_pred -cCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecC
Q 002700 220 -LRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTR 296 (890)
Q Consensus 220 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR 296 (890)
...+++. .+.+.+.... ..+++=++|+||++. ......+...+. ....++++|++|+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LE-epp~~~~fiL~t~ 140 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLE-EPPENTYFILITN 140 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHH-STTTTEEEEEEES
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhc-CCCCCEEEEEEEC
Confidence 2222222 2222222111 124567899999964 344555555554 4456788888887
Q ss_pred ChhH-hh-cccCCCcEeccCC
Q 002700 297 SEEV-CG-LMDAQKKFKVACL 315 (890)
Q Consensus 297 ~~~v-~~-~~~~~~~~~l~~L 315 (890)
+..- .. ....-..+.+.++
T Consensus 141 ~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE---
T ss_pred ChHHChHHHHhhceEEecCCC
Confidence 7652 21 1122345555554
No 195
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.10 E-value=0.007 Score=72.43 Aligned_cols=47 Identities=28% Similarity=0.297 Sum_probs=40.1
Q ss_pred CCcccchHHHHHHHHHHhhc------CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 155 EPTVVGLQLQLEQVWRCLEE------ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+...+|.++.+++|.+++.. ....++.++|++|+||||+|+.++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999988863 245689999999999999999999876
No 196
>PRK12377 putative replication protein; Provisional
Probab=97.10 E-value=0.0013 Score=66.93 Aligned_cols=74 Identities=26% Similarity=0.298 Sum_probs=45.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRI 255 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (890)
+...+.++|.+|+|||+||.++++... .....++++++. ++...+...... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHH
Confidence 346899999999999999999999972 233345666543 344444333211 11111 22222
Q ss_pred hccCcEEEEEeccC
Q 002700 256 LKEKKFVLLLDDLW 269 (890)
Q Consensus 256 l~~kr~LlVlDdv~ 269 (890)
+ .+-=||||||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 3 356699999994
No 197
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.06 E-value=0.023 Score=61.32 Aligned_cols=200 Identities=18% Similarity=0.227 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHH-HHHHhhhccCCCCCCeEEEEEeCCc---cCHHHHHHHHHHHhCCC
Q 002700 161 LQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLL-THINNKFLQRPTNFSCVIWVVVSKD---LRLENIQETIGEKIGLL 236 (890)
Q Consensus 161 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~l~~~ 236 (890)
|.+.+++|..||.+..-..|.|.|+-|+||+.|+ .++.++. +.++.++|.+- .+...+...++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5667899999999888889999999999999999 7777664 12666766532 34556677777777642
Q ss_pred c-----------------------cccccccHHHHHH-------HHHH-------------------Hhc---cCcEEEE
Q 002700 237 N-----------------------DTWKNRRIEQKAQ-------DIFR-------------------ILK---EKKFVLL 264 (890)
Q Consensus 237 ~-----------------------~~~~~~~~~~~~~-------~l~~-------------------~l~---~kr~LlV 264 (890)
. ..+......++.. .|++ +|. .+|-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 0001111122211 1221 110 1267999
Q ss_pred EeccCCc-----------ccccccccCCCCCCCCCcEEEEecCChhHhh----cc--cCCCcEeccCCChHHHHHHHHHH
Q 002700 265 LDDLWQR-----------VDLTKVGVPLPGPQNNASKVVFTTRSEEVCG----LM--DAQKKFKVACLSDIDAWELFRQK 327 (890)
Q Consensus 265 lDdv~~~-----------~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~~----~~--~~~~~~~l~~L~~~ea~~Lf~~~ 327 (890)
+|+.-.. .+|.. .+ ...+-.+||++|-+..... .+ ...+.+.|...+.+-|..+...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa---~L--v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAA---SL--VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHH---HH--HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9997432 12332 22 1334567899888765533 22 23357889999999999999988
Q ss_pred hcCcccC------------CC-----hhHHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHH
Q 002700 328 VGEEALH------------SH-----PAILELAHTVAKECGGLPLALITVGRAMACKKTPEE 372 (890)
Q Consensus 328 ~~~~~~~------------~~-----~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~ 372 (890)
....... .+ .....-....++..||-=.-+..+++.++...++.+
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 7643100 00 123344567778889999999999999887766543
No 198
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.06 E-value=0.0022 Score=61.90 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=50.5
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE 223 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (890)
.++||-++.++++.-...+++.+-+.|.||+|+||||-+..+++... -...=+.+.-.++|+...+.
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGID 93 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGID 93 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccccccH
Confidence 46899999999998888888999999999999999999999888862 11122445555555544433
No 199
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.021 Score=60.53 Aligned_cols=175 Identities=13% Similarity=0.114 Sum_probs=94.1
Q ss_pred HHHHHHHHhhcCC-eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCC-e-----EEEEEeCCccCHHHHHHHHHHHhCCC
Q 002700 164 QLEQVWRCLEEES-VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFS-C-----VIWVVVSKDLRLENIQETIGEKIGLL 236 (890)
Q Consensus 164 ~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~-----~~wv~~s~~~~~~~~~~~i~~~l~~~ 236 (890)
..+++.+.+..++ ...+.+.|+.|+||+++|..++....-...... | +-++..+..+|...+. +
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~---------p 81 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIK---------P 81 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe---------c
Confidence 3456666666655 347889999999999999998876521100000 0 0000000111110000 0
Q ss_pred ccccccccHHHHHHHHHHHh-----ccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCCh-hHh-hcccCC
Q 002700 237 NDTWKNRRIEQKAQDIFRIL-----KEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRSE-EVC-GLMDAQ 307 (890)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~~-~v~-~~~~~~ 307 (890)
......-.+++.. .+.+.+ .+++-++|+|++.. ......+...+. ....++.+|++|.+. .+. +....-
T Consensus 82 ~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~lLpTI~SRC 159 (319)
T PRK06090 82 EKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLE-EPAPNCLFLLVTHNQKRLLPTIVSRC 159 (319)
T ss_pred CcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhChHHHHhcc
Confidence 0000011222222 222222 24556888999863 344555655555 334456666655544 443 222334
Q ss_pred CcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 308 KKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 308 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
..+.+.+++++++.+.+.... .+ .+..+++.++|.|+.+..+
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~------~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKGQG------IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eeEeCCCCCHHHHHHHHHHcC------Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 678999999999999886531 11 1356788999999877554
No 200
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.02 E-value=0.012 Score=61.27 Aligned_cols=54 Identities=28% Similarity=0.319 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002700 164 QLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENI 225 (890)
Q Consensus 164 ~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 225 (890)
-++++..++..+ .-|.+.|.+|+|||++|+.++... . ...+.+++....+..++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g---~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---D---RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---C---CCEEEEeCCccCCHHHH
Confidence 344455555433 456789999999999999998754 2 23455666655554444
No 201
>PRK07261 topology modulation protein; Provisional
Probab=97.01 E-value=0.0029 Score=61.08 Aligned_cols=67 Identities=18% Similarity=0.376 Sum_probs=42.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhcc
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKE 258 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 258 (890)
.|.|+|++|+||||||+.+.....-..-+.|...|-.. +...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48999999999999999998775111224455555211 1122344555666666766
Q ss_pred CcEEEEEeccCC
Q 002700 259 KKFVLLLDDLWQ 270 (890)
Q Consensus 259 kr~LlVlDdv~~ 270 (890)
.+ .|+|+...
T Consensus 59 ~~--wIidg~~~ 68 (171)
T PRK07261 59 HD--WIIDGNYS 68 (171)
T ss_pred CC--EEEcCcch
Confidence 66 67788643
No 202
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.01 E-value=0.0046 Score=74.55 Aligned_cols=173 Identities=17% Similarity=0.163 Sum_probs=92.5
Q ss_pred cccchHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH
Q 002700 157 TVVGLQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE 223 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (890)
.+.|.+..++++.+.+.- ...+-|.++|++|+|||++|+++++.. ...| +.++.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 478999999998877631 234578899999999999999999876 2222 222211
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCcc-------------cccccccCCCCCCCCCcE
Q 002700 224 NIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRV-------------DLTKVGVPLPGPQNNASK 290 (890)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~~~~~gs~ 290 (890)
.+. ... .......+...+.....+.+.+|++||++.-. ....+...+.+....+..
T Consensus 247 ~i~----~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EIM----SKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HHh----ccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 110 000 11111222223333335567899999984310 011122222211123334
Q ss_pred EEE-ecCChhH-hhcc----cCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchH
Q 002700 291 VVF-TTRSEEV-CGLM----DAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLA 356 (890)
Q Consensus 291 Iii-TtR~~~v-~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 356 (890)
++| ||....- ...+ .-...+.++..+.++-.+++...........+ .....+++.+.|.--+
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCHH
Confidence 444 5544331 1111 12346778888888888888865533221111 1245677777776533
No 203
>PRK08181 transposase; Validated
Probab=97.00 E-value=0.00077 Score=69.60 Aligned_cols=72 Identities=24% Similarity=0.268 Sum_probs=43.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL 256 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 256 (890)
..-+.++|.+|+|||.||.++.+... .....++|+++ .++...+..... ..+..+. .+.+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~------~~L~~~l~~a~~-------~~~~~~~----l~~l 165 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRT------TDLVQKLQVARR-------ELQLESA----IAKL 165 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeH------HHHHHHHHHHHh-------CCcHHHH----HHHH
Confidence 35699999999999999999998762 22334555543 444444433211 1122222 2222
Q ss_pred ccCcEEEEEeccC
Q 002700 257 KEKKFVLLLDDLW 269 (890)
Q Consensus 257 ~~kr~LlVlDdv~ 269 (890)
.+-=||||||+.
T Consensus 166 -~~~dLLIIDDlg 177 (269)
T PRK08181 166 -DKFDLLILDDLA 177 (269)
T ss_pred -hcCCEEEEeccc
Confidence 234499999995
No 204
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0043 Score=69.15 Aligned_cols=186 Identities=15% Similarity=0.199 Sum_probs=106.8
Q ss_pred CcccchHHHHHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhccCC-CCCCeEEEEEeCCccCHHHHHHHHHHH-
Q 002700 156 PTVVGLQLQLEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFLQRP-TNFSCVIWVVVSKDLRLENIQETIGEK- 232 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~- 232 (890)
+++||-+..+..|...+..++. .--...|+-|+||||+|+-++....-.. ...+ +++.=..-+.|...
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~e---------PC~~C~~Ck~I~~g~ 86 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAE---------PCGKCISCKEINEGS 86 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCC---------cchhhhhhHhhhcCC
Confidence 4579999999999999987653 3456789999999999999887761111 1111 00000011111111
Q ss_pred -hCCC-ccccccccHHHHHHHHHHHh-----ccCcEEEEEeccC--CcccccccccCCCCCCCCCcEEEEecCC-hhH-h
Q 002700 233 -IGLL-NDTWKNRRIEQKAQDIFRIL-----KEKKFVLLLDDLW--QRVDLTKVGVPLPGPQNNASKVVFTTRS-EEV-C 301 (890)
Q Consensus 233 -l~~~-~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~~gs~IiiTtR~-~~v-~ 301 (890)
+.+- -+......+++ +..|.+.. .+|-=+.|+|+|. +...|..+...+. ..-.+...|+.|++ ..+ .
T Consensus 87 ~~DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLE-EPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 87 LIDVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLE-EPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred cccchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccc-cCccCeEEEEecCCcCcCch
Confidence 0000 00001111121 12222222 3455688999996 5567777777765 33344555555544 444 2
Q ss_pred hcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcch
Q 002700 302 GLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPL 355 (890)
Q Consensus 302 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 355 (890)
.....-..|.++.++.++-...+...+..+....++ +....|++..+|..-
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~---~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEE---DALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccCH---HHHHHHHHHcCCChh
Confidence 233445689999999999999998888766544443 455667777766543
No 205
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.023 Score=60.94 Aligned_cols=176 Identities=11% Similarity=0.081 Sum_probs=94.8
Q ss_pred HHHHHHHHhhcCC-eeEEEEEcCCCChHHHHHHHHHhhhccC--CCCCCe-----EEEEEeCCccCHHHHHHHHHHHhCC
Q 002700 164 QLEQVWRCLEEES-VGIVGLYGMGGVGKTTLLTHINNKFLQR--PTNFSC-----VIWVVVSKDLRLENIQETIGEKIGL 235 (890)
Q Consensus 164 ~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~-----~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (890)
.-+++.+.+..++ ..-..+.|+.|+||+++|..++....-. ...-.| +-++..+..+|+..+.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------- 80 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT--------- 80 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe---------
Confidence 3456677776654 4577899999999999999987765210 000000 0000011111111100
Q ss_pred CccccccccHHHHHHHHHHHh-----ccCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCCh-hHhhc-ccC
Q 002700 236 LNDTWKNRRIEQKAQDIFRIL-----KEKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRSE-EVCGL-MDA 306 (890)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~~-~v~~~-~~~ 306 (890)
+......-.+++.. .+.+.+ .+++-++|+|+++. ......+...+. ....++.+|++|.+. .+... .+.
T Consensus 81 p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 81 PEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLE-EPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred cccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhChHHHHhc
Confidence 00000011222222 222222 35677999999863 344555555555 334466666666554 34322 233
Q ss_pred CCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHH
Q 002700 307 QKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALI 358 (890)
Q Consensus 307 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 358 (890)
-..+.+.+++++++.+.+....+ .+ .+.+..++..++|.|....
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVT-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccC-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 45789999999999988865432 11 1336788999999996544
No 206
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.88 E-value=0.0082 Score=67.56 Aligned_cols=173 Identities=14% Similarity=0.061 Sum_probs=90.9
Q ss_pred CcccchHHHHHHHHHHhh---c-------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLE---E-------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENI 225 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~---~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 225 (890)
.++.|.+..++.+.+... . ...+-|.++|++|+|||.+|+++++.. ...| +-+..+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh
Confidence 356788776666654321 1 234678999999999999999999986 2222 222211 11
Q ss_pred HHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCcc----cc----------cccccCCCCCCCCCcEE
Q 002700 226 QETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRV----DL----------TKVGVPLPGPQNNASKV 291 (890)
Q Consensus 226 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----~~----------~~l~~~l~~~~~~gs~I 291 (890)
. ... .+.+...+...+...-...+++|++|+++.-. .. ..+...+. ....+.-|
T Consensus 296 ~----~~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~-~~~~~V~v 363 (489)
T CHL00195 296 F----GGI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS-EKKSPVFV 363 (489)
T ss_pred c----ccc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh-cCCCceEE
Confidence 1 000 11111222222222224578999999985310 00 00111111 12233446
Q ss_pred EEecCChhH-----hhcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc
Q 002700 292 VFTTRSEEV-----CGLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP 354 (890)
Q Consensus 292 iiTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 354 (890)
|.||.+... .....-+..+.++.-+.++-.++|..+.......... ..-...+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 667765542 1211234678888889999999998877543211111 112345666665554
No 207
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.85 E-value=0.038 Score=67.31 Aligned_cols=46 Identities=28% Similarity=0.398 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHhhc-------C--CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQVWRCLEE-------E--SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999888888753 1 12578899999999999999998875
No 208
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.83 E-value=0.036 Score=62.68 Aligned_cols=198 Identities=16% Similarity=0.130 Sum_probs=120.6
Q ss_pred CcccchHHHHHHHHHHhhc-----CCeeEEEEEcCCCChHHHHHHHHHhhhcc--CC---CCCCeEEEEEeCCccCHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE-----ESVGIVGLYGMGGVGKTTLLTHINNKFLQ--RP---TNFSCVIWVVVSKDLRLENI 225 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~---~~f~~~~wv~~s~~~~~~~~ 225 (890)
..+-+||.+..+|...+.. +..+.+.|.|.+|+|||..+..|.+.... .+ ..|+ .+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 3467899999999888753 34459999999999999999999986521 11 2232 334554455568999
Q ss_pred HHHHHHHhCCCccccccccHHHHHHHHHHHhc-----cCcEEEEEeccCC-----cccccccccCCCCCCCCCcEEEEec
Q 002700 226 QETIGEKIGLLNDTWKNRRIEQKAQDIFRILK-----EKKFVLLLDDLWQ-----RVDLTKVGVPLPGPQNNASKVVFTT 295 (890)
Q Consensus 226 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~-----~~~~~~l~~~l~~~~~~gs~IiiTt 295 (890)
+..|.+++.... .......+.+..++. .+..++++|+++. .+.+-.+ |.....++|+++|-+
T Consensus 475 Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 475 YEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCceEEEE
Confidence 999999997643 333445555665553 4678889998742 1112222 111234567766533
Q ss_pred CCh--h---------HhhcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHHHH
Q 002700 296 RSE--E---------VCGLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRA 363 (890)
Q Consensus 296 R~~--~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~ 363 (890)
=.. + ++..+ +...+...+.+.++-.++...+..+...-.....+=+++.|+.-.|..-.|+.+.-++
T Consensus 547 IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 211 1 11221 2245677888888888888777654431222333445666666666666666555433
No 209
>PRK06921 hypothetical protein; Provisional
Probab=96.82 E-value=0.00092 Score=69.34 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=29.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVV 216 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 216 (890)
....+.++|..|+|||+||.++++... ......++++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456899999999999999999999872 121344566653
No 210
>PRK04296 thymidine kinase; Provisional
Probab=96.81 E-value=0.0014 Score=64.49 Aligned_cols=113 Identities=15% Similarity=0.081 Sum_probs=62.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhc
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILK 257 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 257 (890)
.++.|+|..|.||||+|..++.+.. .+...++.+. ..++.......++.+++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4788999999999999999988872 2233333332 1112122233455555543221112233444444444 33
Q ss_pred cCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCChh
Q 002700 258 EKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRSEE 299 (890)
Q Consensus 258 ~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~~~ 299 (890)
++.-+||+|.+.- .++...+...+ ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---HHcCCeEEEEecCcc
Confidence 3556899999842 22122222221 245788999998854
No 211
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.80 E-value=0.014 Score=70.48 Aligned_cols=172 Identities=16% Similarity=0.145 Sum_probs=94.6
Q ss_pred CcccchHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCH
Q 002700 156 PTVVGLQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRL 222 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 222 (890)
..+.|.+..++++.+.+.- ...+-|.++|++|+|||++|+++++.. ...| +.+..+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f---i~v~~~----- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF---IAVRGP----- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehH-----
Confidence 3467888888877776531 134568899999999999999999986 2232 222211
Q ss_pred HHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCcc-----c---------ccccccCCCC-CCCC
Q 002700 223 ENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRV-----D---------LTKVGVPLPG-PQNN 287 (890)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----~---------~~~l~~~l~~-~~~~ 287 (890)
++ .... ...+...+...+...-...+.+|++|+++.-. . ...+...+.+ ....
T Consensus 522 -~l----~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 -EI----LSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred -HH----hhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 11 1111 11122222222223334578999999985210 0 1112112211 1223
Q ss_pred CcEEEEecCChhHhhc-----ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc
Q 002700 288 ASKVVFTTRSEEVCGL-----MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP 354 (890)
Q Consensus 288 gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 354 (890)
+..||.||...+.... ..-+..+.++..+.++-.++|+.+........+.+ ...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 4556667766554211 12346788899999999999987665433222222 345666777654
No 212
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.79 E-value=0.012 Score=57.97 Aligned_cols=171 Identities=18% Similarity=0.270 Sum_probs=94.0
Q ss_pred CcccchHHHHHH---HHHHhhcC------CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHH
Q 002700 156 PTVVGLQLQLEQ---VWRCLEEE------SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQ 226 (890)
Q Consensus 156 ~~~vGr~~~~~~---l~~~L~~~------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 226 (890)
+++||.+..+.+ |++.|.+. ..+-|..+|++|.|||-+|+++++.. +-.| +-|.. .+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~---l~vka------t~-- 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL---LLVKA------TE-- 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce---EEech------HH--
Confidence 457998876644 66777653 57899999999999999999999986 2222 11110 11
Q ss_pred HHHHHHhCCCccccccccHHHHHHHHHHHh-ccCcEEEEEeccCCc----------cc----ccccccCCCC-CCCCCcE
Q 002700 227 ETIGEKIGLLNDTWKNRRIEQKAQDIFRIL-KEKKFVLLLDDLWQR----------VD----LTKVGVPLPG-PQNNASK 290 (890)
Q Consensus 227 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~----~~~l~~~l~~-~~~~gs~ 290 (890)
-|.+..| +....+..+.++- +.-++.+.+|.++-- .+ ...+.--+.+ ..+.|..
T Consensus 187 -liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 187 -LIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred -HHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 1111111 1122223333333 346899999987420 11 1112111211 2345666
Q ss_pred EEEecCChhHhhcc---cCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc
Q 002700 291 VVFTTRSEEVCGLM---DAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP 354 (890)
Q Consensus 291 IiiTtR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 354 (890)
.|-.|.+..+.... .-...++..--+++|-.+++...+..-..+-+.. .+.++++.+|.-
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCCC
Confidence 67777766653221 1224566677788888888887765433222222 345555555543
No 213
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.71 E-value=0.0071 Score=61.56 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=35.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENI 225 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 225 (890)
...++.|+|.+|+|||++|.+++.... .....++|++.. .+....+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 457999999999999999999988762 234678899887 5554443
No 214
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.71 E-value=0.0058 Score=74.59 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=44.7
Q ss_pred CcccchHHHHHHHHHHhhcC---------CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 002700 156 PTVVGLQLQLEQVWRCLEEE---------SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK 218 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 218 (890)
..++|.+..++.+.+.+... ...++.++|++|+|||++|+.+.... .......+.++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 46899999999998888541 14578899999999999999999876 22223445555554
No 215
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.71 E-value=0.014 Score=70.30 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=38.0
Q ss_pred CCcccchHHHHHHHHHHhhc-------C--CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 155 EPTVVGLQLQLEQVWRCLEE-------E--SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...++|.+..++.+.+.+.. . ...++.++|++|+|||+||+.++...
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 34678999999988888753 1 23468899999999999999998876
No 216
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.054 Score=58.05 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=56.6
Q ss_pred cCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCC-hhHhhc-ccCCCcEeccCCChHHHHHHHHHHhcCccc
Q 002700 258 EKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRS-EEVCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEAL 333 (890)
Q Consensus 258 ~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 333 (890)
+++-++|+|+++. ......+...+. ....++.+|++|.+ ..+... ...-..+.+.+++.++..+.+... +
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~---- 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLE-EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-G---- 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhc-CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-C----
Confidence 4566888999863 345566655555 34445655555544 444322 233468899999999999998764 1
Q ss_pred CCChhHHHHHHHHHHHcCCcchHHHHH
Q 002700 334 HSHPAILELAHTVAKECGGLPLALITV 360 (890)
Q Consensus 334 ~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (890)
.++ ...++..++|.|..+..+
T Consensus 205 -~~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 205 -VAD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -CCh-----HHHHHHHcCCCHHHHHHH
Confidence 111 123577889999765544
No 217
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.69 E-value=0.0022 Score=68.13 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=40.2
Q ss_pred cccchHHHHHHHHHHhhc------CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 157 TVVGLQLQLEQVWRCLEE------ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.++|.++.++++++++.. ...++++++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999864 245799999999999999999999887
No 218
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.69 E-value=0.0013 Score=63.66 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=26.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEE
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVV 215 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 215 (890)
...-+.++|.+|+|||.||.++.+.... .-..+.|+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~ 82 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFIT 82 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEee
Confidence 4467999999999999999999988732 223456664
No 219
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.68 E-value=0.0037 Score=61.32 Aligned_cols=129 Identities=15% Similarity=0.177 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc--cCH----H-------HHHH
Q 002700 161 LQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD--LRL----E-------NIQE 227 (890)
Q Consensus 161 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~----~-------~~~~ 227 (890)
+..+....++.|. ...+|.+.|++|.|||.||.+.+-+. -....++.++++.-.-. .++ . ....
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 3445555666665 55699999999999999999988776 33478888888752211 110 0 1111
Q ss_pred HHHHHhCCCccccccccHHHHHHH------HHHHhcc---CcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecC
Q 002700 228 TIGEKIGLLNDTWKNRRIEQKAQD------IFRILKE---KKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTR 296 (890)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~~~------l~~~l~~---kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR 296 (890)
.+...+..-. .....+..... -..+++| ...++|+|++.+ ..++..+.. ..+.|||||++--
T Consensus 82 p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT----R~g~~skii~~GD 154 (205)
T PF02562_consen 82 PIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT----RIGEGSKIIITGD 154 (205)
T ss_dssp HHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT----TB-TT-EEEEEE-
T ss_pred HHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc----ccCCCcEEEEecC
Confidence 1222221100 01112222110 0123344 357999999954 345555543 3467999999876
Q ss_pred Chh
Q 002700 297 SEE 299 (890)
Q Consensus 297 ~~~ 299 (890)
..+
T Consensus 155 ~~Q 157 (205)
T PF02562_consen 155 PSQ 157 (205)
T ss_dssp ---
T ss_pred cee
Confidence 543
No 220
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.66 E-value=0.0036 Score=75.84 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=38.8
Q ss_pred CCcccchHHHHHHHHHHhhc-------C--CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 155 EPTVVGLQLQLEQVWRCLEE-------E--SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...++|.+..++.+.+.+.. + ...++.++|++|+|||.+|++++...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999888742 1 34578999999999999999998876
No 221
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.65 E-value=0.0015 Score=59.08 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999985
No 222
>PRK09183 transposase/IS protein; Provisional
Probab=96.64 E-value=0.0018 Score=66.96 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
....+.|+|++|+|||+||.++.+..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999998775
No 223
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.64 E-value=0.006 Score=60.10 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=53.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHHhCCCcccc-ccccHHHHHHHHHH
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD-LRLENIQETIGEKIGLLNDTW-KNRRIEQKAQDIFR 254 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 254 (890)
++||.++|+.|+||||.+.+++... ..+ -..+..++.... ....+-++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999999988887 222 445677776432 234566788888888653211 12234444433333
Q ss_pred HhccC-cEEEEEecc
Q 002700 255 ILKEK-KFVLLLDDL 268 (890)
Q Consensus 255 ~l~~k-r~LlVlDdv 268 (890)
..+.+ .=++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 33333 347777765
No 224
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.63 E-value=0.018 Score=58.71 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=54.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCC------CeEEEEEeCCccCHHHHHHHHHHHhCCCcc-------cccc
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNF------SCVIWVVVSKDLRLENIQETIGEKIGLLND-------TWKN 242 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~ 242 (890)
...++.|+|.+|+|||++|.+++... .... ..++|+.....++...+. .+++..+.... -...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 45799999999999999999998765 1222 568899887776655443 33333221100 0112
Q ss_pred ccHHHHHHHHHHHhc----cCcEEEEEecc
Q 002700 243 RRIEQKAQDIFRILK----EKKFVLLLDDL 268 (890)
Q Consensus 243 ~~~~~~~~~l~~~l~----~kr~LlVlDdv 268 (890)
.+.++....+.+... .+.-++|+|.+
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 344445444444432 34558888887
No 225
>PRK06526 transposase; Provisional
Probab=96.61 E-value=0.0021 Score=66.07 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+..-+.|+|++|+|||+||.++....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999998876
No 226
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.58 E-value=0.02 Score=58.94 Aligned_cols=170 Identities=17% Similarity=0.161 Sum_probs=97.8
Q ss_pred CcccchHHHHHHHHHHhhc----CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCH-HHHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE----ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRL-ENIQETIG 230 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~i~ 230 (890)
..++|-.++...+.+++.. +...-|.|+|+.|.|||+|......+. +..-+..+-|........ ...++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4589999999999888865 566788899999999999998887774 233344455555443322 22444555
Q ss_pred HHhCCCccc--cccccHHHHHHHHHHHhcc------CcEEEEEeccCCc------ccccccccCCCCCCCCCcEEEEecC
Q 002700 231 EKIGLLNDT--WKNRRIEQKAQDIFRILKE------KKFVLLLDDLWQR------VDLTKVGVPLPGPQNNASKVVFTTR 296 (890)
Q Consensus 231 ~~l~~~~~~--~~~~~~~~~~~~l~~~l~~------kr~LlVlDdv~~~------~~~~~l~~~l~~~~~~gs~IiiTtR 296 (890)
.|+...... ....+..+..+.+...|+. -++..|+|..+-- .-+-.+...-.....+-+.|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 544321110 1122333444555555532 3588888876421 0011111111113445677778999
Q ss_pred ChhH-------hhcccCCCcEeccCCChHHHHHHHHHHh
Q 002700 297 SEEV-------CGLMDAQKKFKVACLSDIDAWELFRQKV 328 (890)
Q Consensus 297 ~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (890)
-.-. -+.+....++-++.++-++-..+++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 6532 2233333456667777777777777655
No 227
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.57 E-value=0.078 Score=57.43 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhc---CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 162 QLQLEQVWRCLEE---ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 162 ~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+.-.+.+.+.+.+ +...+|+|.|.=|+||||+.+++.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445666777765 467899999999999999999999987
No 228
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.00022 Score=70.56 Aligned_cols=102 Identities=25% Similarity=0.245 Sum_probs=71.7
Q ss_pred CCCceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccCccCCCEEEccCCCCCccch--hhhcCCCCcEEe
Q 002700 537 CPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHLDLSESDISELPE--ELKALVNLKCLN 614 (890)
Q Consensus 537 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~ 614 (890)
+.+.+-|+++||.+..+. +..+|+.|+||.||-|.|+.|. .+..|.+|+.|.|+.|.|..+-+ -+.+|++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 455666777888776653 3678888999999988888875 56778888888888888876654 356778888887
Q ss_pred cCccccccccch----hhhcCCccccccccc
Q 002700 615 LEWTRYLITIPR----QLVSNLSRLHVLRMF 641 (890)
Q Consensus 615 l~~~~~l~~lp~----~~i~~l~~L~~L~l~ 641 (890)
|..|.-...-+. .++.-|++|+.|+-.
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccCc
Confidence 776654333332 234567777777543
No 229
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.54 E-value=0.015 Score=58.50 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=37.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQE 227 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 227 (890)
...++.|+|.+|+|||++|.+++... ......++|++... +....+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 45799999999999999999988776 23356889999875 55554443
No 230
>PRK04132 replication factor C small subunit; Provisional
Probab=96.54 E-value=0.034 Score=66.28 Aligned_cols=151 Identities=11% Similarity=0.037 Sum_probs=91.3
Q ss_pred CCCChHHHHHHHHHhhhccCCCCC-CeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEE
Q 002700 185 MGGVGKTTLLTHINNKFLQRPTNF-SCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVL 263 (890)
Q Consensus 185 ~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 263 (890)
+.++||||+|.+++++.. .+.+ ..++-+++++......+. ++++....... . -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--~--------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVIR-EKVKEFARTKP--I--------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--c--------------CCCCCEEE
Confidence 678999999999999861 1222 346777777765555443 33332211000 0 01245799
Q ss_pred EEeccCC--cccccccccCCCCCCCCCcEEEEecCChh-Hhhc-ccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhH
Q 002700 264 LLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRSEE-VCGL-MDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAI 339 (890)
Q Consensus 264 VlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~ 339 (890)
|+|+++. ......+...+. .....+++|++|.+.. +... ...-..+.+.+++.++-...+...+.......+
T Consensus 635 IIDEaD~Lt~~AQnALLk~lE-ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~--- 710 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT--- 710 (846)
T ss_pred EEECcccCCHHHHHHHHHHhh-CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---
Confidence 9999974 334555555444 3334566666555443 3222 123468899999999999888776654332222
Q ss_pred HHHHHHHHHHcCCcchHHH
Q 002700 340 LELAHTVAKECGGLPLALI 358 (890)
Q Consensus 340 ~~~~~~i~~~c~GlPLai~ 358 (890)
.+....|++.++|.+..+.
T Consensus 711 ~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 3577899999999885443
No 231
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.028 Score=63.06 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=88.0
Q ss_pred CcccchHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCH
Q 002700 156 PTVVGLQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRL 222 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 222 (890)
+++=|.|+.+.++.+...- ...+-|..+|+||+|||++|+++++.- ...| +.++..
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp--- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP--- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH---
Confidence 3445577777777655532 356789999999999999999999986 4444 222211
Q ss_pred HHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCcc-------------cccccccCCCCCCCC-C
Q 002700 223 ENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRV-------------DLTKVGVPLPGPQNN-A 288 (890)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~~~~~-g 288 (890)
+++. . +.+.++..+....++.=+--+++|.||.++.-. .+..+..-+.+-... +
T Consensus 503 -EL~s----k-------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 -ELFS----K-------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred -HHHH----H-------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 1111 0 012222222222333333456888888875310 111222222211112 2
Q ss_pred cEEEEecCChh-Hh-hccc---CCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHH
Q 002700 289 SKVVFTTRSEE-VC-GLMD---AQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELA 343 (890)
Q Consensus 289 s~IiiTtR~~~-v~-~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~ 343 (890)
--||-.|..++ +- ..+. -+..+.++.-+.+--.++|+.++.......+-++.+++
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 23333443333 31 1122 35677788777888888999988766544444444444
No 232
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.53 E-value=0.02 Score=57.97 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=33.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLR 221 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 221 (890)
...++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 46799999999999999999998876 22345677887655443
No 233
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.51 E-value=0.012 Score=60.42 Aligned_cols=92 Identities=20% Similarity=0.334 Sum_probs=56.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCC-CeEEEEEeCCccC-HHHHHHHHHHHhCCCccc----cccccH---
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNF-SCVIWVVVSKDLR-LENIQETIGEKIGLLNDT----WKNRRI--- 245 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~--- 245 (890)
.+..-++|.|.+|+||||||+.+++.. +.+| +.++++-+++... ..++...+.+.-...... ..+...
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 143 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGAR 143 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 355689999999999999999999987 3334 4566666666543 455555555432111100 011111
Q ss_pred ---HHHHHHHHHHh--c-cCcEEEEEeccC
Q 002700 246 ---EQKAQDIFRIL--K-EKKFVLLLDDLW 269 (890)
Q Consensus 246 ---~~~~~~l~~~l--~-~kr~LlVlDdv~ 269 (890)
....-.+.+++ + ++.+|+++||+-
T Consensus 144 ~~~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 144 ARVALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 11223455666 3 889999999983
No 234
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.026 Score=62.56 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=88.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRI 255 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (890)
...-|.+||++|+|||-||++|+|.. .-.| ++|..+ +++... .+.++......+++.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-----------VGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-----------VGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-----------hhhHHHHHHHHHHHh
Confidence 34568899999999999999999986 4444 333322 121111 122222222333333
Q ss_pred hccCcEEEEEeccCCc-------cc------ccccccCCCC-CCCCCcEEEEecCChhHhh-----cccCCCcEeccCCC
Q 002700 256 LKEKKFVLLLDDLWQR-------VD------LTKVGVPLPG-PQNNASKVVFTTRSEEVCG-----LMDAQKKFKVACLS 316 (890)
Q Consensus 256 l~~kr~LlVlDdv~~~-------~~------~~~l~~~l~~-~~~~gs~IiiTtR~~~v~~-----~~~~~~~~~l~~L~ 316 (890)
-..-+++|.||.++.- .. ...+..-+.+ ....|.-||-.|..+++.. --.-+...-++.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 3568999999998521 11 1122222221 1335666777776666521 11224567788888
Q ss_pred hHHHHHHHHHHhcC--cccCCChhHHHHHHHHHHHcCCcc
Q 002700 317 DIDAWELFRQKVGE--EALHSHPAILELAHTVAKECGGLP 354 (890)
Q Consensus 317 ~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlP 354 (890)
.+|=.++++..... .....+-++.++++. .+|.|.-
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 99999999988873 222344456666554 3555554
No 235
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.43 E-value=0.0094 Score=62.91 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=56.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc---cccccHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT---WKNRRIEQKAQDI 252 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 252 (890)
..+++-|+|++|+||||||.++.... ...-..++|++..+.++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 55799999999999999999988776 2234567888776655542 35555543221 1233455555555
Q ss_pred HHHhc-cCcEEEEEeccC
Q 002700 253 FRILK-EKKFVLLLDDLW 269 (890)
Q Consensus 253 ~~~l~-~kr~LlVlDdv~ 269 (890)
...++ +..-++|+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55453 466799999973
No 236
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.033 Score=64.53 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=99.2
Q ss_pred cccchHHHHH---HHHHHhhcC---------CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHH
Q 002700 157 TVVGLQLQLE---QVWRCLEEE---------SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLEN 224 (890)
Q Consensus 157 ~~vGr~~~~~---~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 224 (890)
++.|-|+.++ ++++.|.++ -++=|.++|++|+|||-||++++... . +-|++++...
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGSE---- 379 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGSE---- 379 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechHH----
Confidence 5678776554 455666542 35678999999999999999999885 2 2234443321
Q ss_pred HHHHHHHHhCCCccccccccHHHHHHHHHHHh-ccCcEEEEEeccCCc---c--------------cccccccCCCCCC-
Q 002700 225 IQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL-KEKKFVLLLDDLWQR---V--------------DLTKVGVPLPGPQ- 285 (890)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---~--------------~~~~l~~~l~~~~- 285 (890)
..+-+... . ..++..+...- ...++.+.+|+++.. . .+.++..-..+..
T Consensus 380 ----FvE~~~g~-------~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 380 ----FVEMFVGV-------G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ----HHHHhccc-------c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 11111110 0 11222222222 346788998887421 0 1222222222111
Q ss_pred CCCcEEEEecCChhHhh-----cccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHH
Q 002700 286 NNASKVVFTTRSEEVCG-----LMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALI 358 (890)
Q Consensus 286 ~~gs~IiiTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 358 (890)
..+-.++-+|+..++.. .-.-+..+.++.-+...-.++|.-++...... .+..++++ |+...-|.+=|..
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHHH
Confidence 12233444666666532 11235678888888899999999888655422 34456777 8888888886543
No 237
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.016 Score=62.82 Aligned_cols=123 Identities=16% Similarity=0.134 Sum_probs=71.5
Q ss_pred cccchHHHHHHHHHHhhc-CCeeE-EEEEcCCCChHHHHHHHHHhhhccCCC------------------CCCeEEEEEe
Q 002700 157 TVVGLQLQLEQVWRCLEE-ESVGI-VGLYGMGGVGKTTLLTHINNKFLQRPT------------------NFSCVIWVVV 216 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~-~~~~v-v~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~ 216 (890)
.++|-+....++..+..+ ++..- +.++|++|+||||+|.++++...-... ....+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 357777788888888764 44554 999999999999999999988721110 1123444444
Q ss_pred CCccC---HHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc--ccccccccCCCCCCCCCcEE
Q 002700 217 SKDLR---LENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR--VDLTKVGVPLPGPQNNASKV 291 (890)
Q Consensus 217 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~I 291 (890)
+.... ..+..+++.+...... ..++.-++++|+++.- +.-..+...+. .....+++
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lE-ep~~~~~~ 142 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLE-EPPKNTRF 142 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhc-cCCCCeEE
Confidence 43333 2233333333322211 0356779999998632 22333333333 34556777
Q ss_pred EEecCCh
Q 002700 292 VFTTRSE 298 (890)
Q Consensus 292 iiTtR~~ 298 (890)
|++|...
T Consensus 143 il~~n~~ 149 (325)
T COG0470 143 ILITNDP 149 (325)
T ss_pred EEEcCCh
Confidence 7777643
No 238
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.43 E-value=0.012 Score=57.60 Aligned_cols=46 Identities=30% Similarity=0.468 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHhhc----CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQVWRCLEE----ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..++|.|...+.+++--.. ....-|.+||.-|+|||+|++++.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 4589999988888765432 345678999999999999999999988
No 239
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.39 E-value=0.013 Score=71.25 Aligned_cols=105 Identities=17% Similarity=0.252 Sum_probs=60.6
Q ss_pred CCcccchHHHHHHHHHHhhc-------C--CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002700 155 EPTVVGLQLQLEQVWRCLEE-------E--SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENI 225 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 225 (890)
...++|-+..++.|...+.. . ....+.++|+.|+|||+||+.+++.. ...-...+-++.+...+...+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchhccccccH
Confidence 35689999999999888752 1 13467789999999999999999876 222233444444443222222
Q ss_pred HHHHHHHhCCCccccccccHHHHHHHHHHHhccCc-EEEEEeccCC
Q 002700 226 QETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKK-FVLLLDDLWQ 270 (890)
Q Consensus 226 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~ 270 (890)
.+ -++.+.. ....+.. ..+.+.++.++ .+++||++..
T Consensus 585 ~~----l~g~~~g-yvg~~~~---~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 585 SK----LIGSPPG-YVGYNEG---GQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred HH----hcCCCCc-ccCcCcc---chHHHHHHhCCCeEEEECChhh
Confidence 11 1222111 1111111 12344454444 5888999963
No 240
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.38 E-value=0.024 Score=58.19 Aligned_cols=91 Identities=21% Similarity=0.337 Sum_probs=53.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCC----CCeEEEEEeCCccCHHHHHHHHHHHhCCCccc-------ccccc
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTN----FSCVIWVVVSKDLRLENIQETIGEKIGLLNDT-------WKNRR 244 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 244 (890)
...++.|+|.+|+|||++|.+++... ..... ...++|++....++...+. ++++..+..... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 45799999999999999999997553 11111 3679999988777654443 334443321110 01112
Q ss_pred HH---HHHHHHHHHh-cc-CcEEEEEecc
Q 002700 245 IE---QKAQDIFRIL-KE-KKFVLLLDDL 268 (890)
Q Consensus 245 ~~---~~~~~l~~~l-~~-kr~LlVlDdv 268 (890)
.. +....+.+.+ +. +.-++|+|.+
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 22 2333444444 23 5668888887
No 241
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.37 E-value=0.0042 Score=59.02 Aligned_cols=102 Identities=23% Similarity=0.305 Sum_probs=59.6
Q ss_pred CceEEEecccccccccchhhccCCcceEEEcCCCCccccChhccC-ccCCCEEEccCCCCCccch--hhhcCCCCcEEec
Q 002700 539 HLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQ-LVSLQHLDLSESDISELPE--ELKALVNLKCLNL 615 (890)
Q Consensus 539 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~-l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l 615 (890)
..-.+++..|.+..++. |..++.|.+|.+++|.|+.+-+.+.. +++|..|.|.+|+|.++-+ .+..+++|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44566677766555443 56677777777777777766445443 4567777777777665532 3455666666666
Q ss_pred Cccccccccc---hhhhcCCcccccccccCc
Q 002700 616 EWTRYLITIP---RQLVSNLSRLHVLRMFGA 643 (890)
Q Consensus 616 ~~~~~l~~lp---~~~i~~l~~L~~L~l~~~ 643 (890)
-+|. +..-+ .-++.++++|++|++..+
T Consensus 121 l~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 6654 22211 123455666666665543
No 242
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.37 E-value=0.019 Score=50.86 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=34.2
Q ss_pred cccchHHHHHHHHHHhh----c---CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 157 TVVGLQLQLEQVWRCLE----E---ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~----~---~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.++|-+-..+.|.+.+. . .+.-|++.+|.+|+|||.+|+.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46776666666655553 2 356799999999999999999998884
No 243
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.36 E-value=0.01 Score=57.79 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=28.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEE
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWV 214 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 214 (890)
...+|.+.|++|+||||+|+.+++.. ...+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 44699999999999999999999987 3345555555
No 244
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.12 Score=57.73 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=47.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD-LRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR 254 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (890)
...+|+|+|.+|+||||++..+.... ..+.....+..++.... ....+.+......++.... ...+..++...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~- 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE- 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-
Confidence 35799999999999999999988765 22222234555544221 1122223333344443221 1122233333333
Q ss_pred HhccCcEEEEEeccC
Q 002700 255 ILKEKKFVLLLDDLW 269 (890)
Q Consensus 255 ~l~~kr~LlVlDdv~ 269 (890)
.+. ..=+|++|..-
T Consensus 425 ~l~-~~DLVLIDTaG 438 (559)
T PRK12727 425 RLR-DYKLVLIDTAG 438 (559)
T ss_pred Hhc-cCCEEEecCCC
Confidence 333 34588888873
No 245
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.35 E-value=0.016 Score=59.59 Aligned_cols=89 Identities=26% Similarity=0.309 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhhc-CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc
Q 002700 161 LQLQLEQVWRCLEE-ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT 239 (890)
Q Consensus 161 r~~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 239 (890)
+.+.+..+...... ++..-+.++|.+|+|||.||.++.++.. ..--.+.++++ .++..++......
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~~------~el~~~Lk~~~~~---- 154 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFITA------PDLLSKLKAAFDE---- 154 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEEH------HHHHHHHHHHHhc----
Confidence 34444444333311 3667899999999999999999999982 22334555543 4555555544331
Q ss_pred cccccHHHHHHHHHHHhccCcEEEEEeccC
Q 002700 240 WKNRRIEQKAQDIFRILKEKKFVLLLDDLW 269 (890)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 269 (890)
......+.+.+. +-=||||||+.
T Consensus 155 ------~~~~~~l~~~l~-~~dlLIiDDlG 177 (254)
T COG1484 155 ------GRLEEKLLRELK-KVDLLIIDDIG 177 (254)
T ss_pred ------CchHHHHHHHhh-cCCEEEEeccc
Confidence 011122222222 23389999984
No 246
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0076 Score=70.09 Aligned_cols=104 Identities=20% Similarity=0.326 Sum_probs=64.9
Q ss_pred CcccchHHHHHHHHHHhhc---------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE---------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQ 226 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 226 (890)
..++|-+..++.+.+.+.. ...++....|+.|+|||-||++++... .+.=+..+-++.|.......+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsV- 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSV- 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHH-
Confidence 5689999999999988853 145678889999999999999999887 222244554444443322222
Q ss_pred HHHHHHhCCCccccccccHHHHHHHHHHHhccCcE-EEEEeccCC
Q 002700 227 ETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKF-VLLLDDLWQ 270 (890)
Q Consensus 227 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~ 270 (890)
..-+|.+.. ..+.+. -..+-+..+.++| +|.||+|..
T Consensus 567 ---SrLIGaPPG-YVGyee---GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 567 ---SRLIGAPPG-YVGYEE---GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred ---HHHhCCCCC-Cceecc---ccchhHhhhcCCCeEEEechhhh
Confidence 222333321 111111 1234555667877 777899963
No 247
>PRK06696 uridine kinase; Validated
Probab=96.34 E-value=0.0055 Score=62.17 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHhhc---CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 160 GLQLQLEQVWRCLEE---ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 160 Gr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.|++.+++|.+.+.. ++..+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 466777788777753 467899999999999999999999887
No 248
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.32 E-value=0.011 Score=62.45 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=56.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc---cccccHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT---WKNRRIEQKAQDI 252 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 252 (890)
..+++-|+|++|+||||||.+++... ......++|++....++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 46799999999999999999988775 2334578899877766642 34555543221 1233445555555
Q ss_pred HHHhc-cCcEEEEEecc
Q 002700 253 FRILK-EKKFVLLLDDL 268 (890)
Q Consensus 253 ~~~l~-~kr~LlVlDdv 268 (890)
...++ +..-++|+|-|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55443 45678999997
No 249
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.054 Score=53.04 Aligned_cols=145 Identities=19% Similarity=0.282 Sum_probs=82.0
Q ss_pred ccc-hHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH
Q 002700 158 VVG-LQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE 223 (890)
Q Consensus 158 ~vG-r~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (890)
+|| .|..+++|.+.+.- .+.+-|.++|++|.|||-||++|++.. ++-|+.||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---H
Confidence 454 56777777665531 256778999999999999999999875 3445666643 1
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHh----ccCcEEEEEeccCCcc----------c------ccccccCCCC
Q 002700 224 NIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL----KEKKFVLLLDDLWQRV----------D------LTKVGVPLPG 283 (890)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~----------~------~~~l~~~l~~ 283 (890)
-+++-|.+ ....+++.+ ..-+..|..|.+++.. + .-.+...+.+
T Consensus 217 lvqk~ige----------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 217 LVQKYIGE----------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred HHHHHhhh----------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 12221111 111222222 3467788888875310 0 0011122221
Q ss_pred -CCCCCcEEEEecCChhHhh-----cccCCCcEeccCCChHHHHHHHHHHhc
Q 002700 284 -PQNNASKVVFTTRSEEVCG-----LMDAQKKFKVACLSDIDAWELFRQKVG 329 (890)
Q Consensus 284 -~~~~gs~IiiTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 329 (890)
...+.-+||..|..-++.. .-..+..++.++-+++.-.++++-+..
T Consensus 281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 2235668888776655532 112345677788777777777765543
No 250
>PRK09354 recA recombinase A; Provisional
Probab=96.29 E-value=0.013 Score=62.37 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=58.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc---cccccHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT---WKNRRIEQKAQDI 252 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 252 (890)
..+++-|+|++|+||||||.+++... ...-..++|++....++. ..+++++...+. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 46799999999999999999988776 233467889988777664 245555543221 1233455555555
Q ss_pred HHHhc-cCcEEEEEeccC
Q 002700 253 FRILK-EKKFVLLLDDLW 269 (890)
Q Consensus 253 ~~~l~-~kr~LlVlDdv~ 269 (890)
...++ ++.-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55553 456789999973
No 251
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.27 E-value=0.026 Score=57.50 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=49.7
Q ss_pred HHHHHHHhhc--CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCcccccc
Q 002700 165 LEQVWRCLEE--ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKN 242 (890)
Q Consensus 165 ~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 242 (890)
+..+.+...+ .+...+.++|.+|+|||+||.++++... .....++++++ .++...+..... . ..
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it~------~~l~~~l~~~~~-~----~~ 150 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIITV------ADIMSAMKDTFS-N----SE 150 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEH------HHHHHHHHHHHh-h----cc
Confidence 4444444432 2345789999999999999999999872 22345565543 444444433321 0 11
Q ss_pred ccHHHHHHHHHHHhccCcEEEEEeccCC
Q 002700 243 RRIEQKAQDIFRILKEKKFVLLLDDLWQ 270 (890)
Q Consensus 243 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 270 (890)
.+.. .+.+.+. +.=+|||||+..
T Consensus 151 ~~~~----~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 151 TSEE----QLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred ccHH----HHHHHhc-cCCEEEEeCCCC
Confidence 1112 2333344 345888999953
No 252
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.25 E-value=0.0014 Score=75.43 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=16.7
Q ss_pred CCCceEEEecccc-cccc-cchhhccCCcceEEEcCC
Q 002700 537 CPHLLTLFLNKNK-LQMI-HNDFFQFMPSLKVLNLSH 571 (890)
Q Consensus 537 ~~~L~~L~l~~~~-~~~~-~~~~~~~l~~Lr~L~l~~ 571 (890)
++.|+.|.+.++. +... .......+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 4555555555543 2111 112234556666666665
No 253
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.24 E-value=0.016 Score=61.38 Aligned_cols=116 Identities=22% Similarity=0.208 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHhhc----CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCC
Q 002700 160 GLQLQLEQVWRCLEE----ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGL 235 (890)
Q Consensus 160 Gr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (890)
+|....+...+++.. ...+-+.++|..|+|||.||.++++... ..-..+.++++ ..+...+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~---~~g~~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA---KKGVSSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEEH------HHHHHHHHHHHhc
Confidence 455555555555542 1356799999999999999999999973 22234555554 3444555444321
Q ss_pred CccccccccHHHHHHHHHHHhccCcEEEEEeccCC--cccccc--cccCC-CCCC-CCCcEEEEecCC
Q 002700 236 LNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQ--RVDLTK--VGVPL-PGPQ-NNASKVVFTTRS 297 (890)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~--l~~~l-~~~~-~~gs~IiiTtR~ 297 (890)
.+..+.. +.+ .+-=||||||+.. ..+|.. +...+ . .. ..+-.+|+||.-
T Consensus 206 -------~~~~~~l----~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~-~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -------GSVKEKI----DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQ-YRMQEELPTFFTSNF 260 (306)
T ss_pred -------CcHHHHH----HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHH-HHHHCCCeEEEECCC
Confidence 1122222 222 2455899999852 234432 22221 1 11 234557788763
No 254
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.24 E-value=0.0029 Score=58.72 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=31.8
Q ss_pred cchHHHHHHHHHHhhc--CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 159 VGLQLQLEQVWRCLEE--ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 159 vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
||.-..++++.+.+.. .....|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666667777766654 455678999999999999999998875
No 255
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.074 Score=52.47 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=40.4
Q ss_pred cccCCC--CcccchHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 150 EERPIE--PTVVGLQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 150 ~~~~~~--~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
++.|.+ +++=|-++.++++++.+.- ...+-|..+|++|.|||-+|++.+...
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 444443 3577899999999988731 145678899999999999999998775
No 256
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.014 Score=57.16 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=46.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRI 255 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (890)
++.+|||.|.+|+||||+|+.++..+ .... +.-++-...+. ..-.....+......+.....+.+-+.+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45799999999999999999999987 3221 11111111111 111112222223333333455666777788888
Q ss_pred hccCc
Q 002700 256 LKEKK 260 (890)
Q Consensus 256 l~~kr 260 (890)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 257
>PRK06762 hypothetical protein; Provisional
Probab=96.16 E-value=0.062 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998875
No 258
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.16 E-value=0.0058 Score=60.59 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=60.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH-HHHHHHHHHhCCCccccccccHHHHHHHHHHHh
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE-NIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL 256 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 256 (890)
++|.|.|+.|+||||++..+.... .......++.. .++.... .-...+..+-. ...+.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 578999999999999999988776 22333343332 1111100 00000111100 0112233455677777
Q ss_pred ccCcEEEEEeccCCcccccccccCCCCCCCCCcEEEEecCChhHh
Q 002700 257 KEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVC 301 (890)
Q Consensus 257 ~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~ 301 (890)
+..+=.+++|++.+.+....+.... ..|-.|+.|+....+.
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a----~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA----ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH----HcCCEEEEEecCCcHH
Confidence 7778899999997665544433221 2355577777665543
No 259
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.05 E-value=0.042 Score=56.26 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=35.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQET 228 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 228 (890)
...++.|.|.+|+|||++|.++..... ..-..++|++... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHH
Confidence 567999999999999999999776641 2356788887654 34444444
No 260
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.04 E-value=0.0037 Score=62.07 Aligned_cols=87 Identities=30% Similarity=0.356 Sum_probs=51.5
Q ss_pred hccCCcceEEEcCCC--Ccc-ccChhccCccCCCEEEccCCCCCccc--hhhhcCCCCcEEecCccccccccc---hhhh
Q 002700 558 FQFMPSLKVLNLSHA--ELT-ELPVGIAQLVSLQHLDLSESDISELP--EELKALVNLKCLNLEWTRYLITIP---RQLV 629 (890)
Q Consensus 558 ~~~l~~Lr~L~l~~~--~l~-~lp~~i~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp---~~~i 629 (890)
|..+++|++|.++.| .+. .++.....+++|++|++++|+|+.+- ..+..+.+|..|++.+|.. ..+- ..++
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~-~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV-TNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc-cccccHHHHHH
Confidence 445566666666666 332 34444455577777777777665321 1245677777888877763 2232 2345
Q ss_pred cCCcccccccccCccc
Q 002700 630 SNLSRLHVLRMFGASN 645 (890)
Q Consensus 630 ~~l~~L~~L~l~~~~~ 645 (890)
.-+++|++|+-.++..
T Consensus 140 ~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVDG 155 (260)
T ss_pred HHhhhhccccccccCC
Confidence 5677888887766543
No 261
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.03 E-value=0.02 Score=55.25 Aligned_cols=125 Identities=16% Similarity=0.130 Sum_probs=63.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccC--CC---CCC--eEEEEEeCCccCHHHHHHHHHHHhCCCcc----cccccc
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQR--PT---NFS--CVIWVVVSKDLRLENIQETIGEKIGLLND----TWKNRR 244 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 244 (890)
...+++|+|+.|+|||||.+.+..+.-.+ .. .|. .+.|+ .+ .+.++.+++... .....+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 45699999999999999999986431111 00 110 12222 11 345666664321 011111
Q ss_pred HHH-HHHHHHHHhccC--cEEEEEeccCCc---ccccccccCCCCCCCCCcEEEEecCChhHhhcccCCCcEec
Q 002700 245 IEQ-KAQDIFRILKEK--KFVLLLDDLWQR---VDLTKVGVPLPGPQNNASKVVFTTRSEEVCGLMDAQKKFKV 312 (890)
Q Consensus 245 ~~~-~~~~l~~~l~~k--r~LlVlDdv~~~---~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l 312 (890)
..+ ..-.+.+.+..+ +-++++|+.-.. .....+...+......|..||++|.+...... .+.++.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 111 222344455556 678889987432 22222222222111246778888888776532 4444444
No 262
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.02 E-value=0.075 Score=62.77 Aligned_cols=152 Identities=17% Similarity=0.135 Sum_probs=81.1
Q ss_pred cccchHHHHHHHHHHh---hc---------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHH
Q 002700 157 TVVGLQLQLEQVWRCL---EE---------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLEN 224 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L---~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 224 (890)
.+.|.+...+++.+.+ .+ .-.+-|.++|++|+|||++|+.+.... ...| +.++.+.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------
Confidence 4567766655554433 22 113359999999999999999998876 2232 2222221
Q ss_pred HHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCcc------------c----ccccccCCCC-CCCC
Q 002700 225 IQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRV------------D----LTKVGVPLPG-PQNN 287 (890)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~l~~~l~~-~~~~ 287 (890)
+.. .. ...........+...-...+++|++|+++.-. . ...+...+.+ ....
T Consensus 221 ~~~----~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FVE----MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hHH----hh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 110 00 01111122222223334578899999985320 0 1111111110 1233
Q ss_pred CcEEEEecCChhHhhc-----ccCCCcEeccCCChHHHHHHHHHHhcCc
Q 002700 288 ASKVVFTTRSEEVCGL-----MDAQKKFKVACLSDIDAWELFRQKVGEE 331 (890)
Q Consensus 288 gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 331 (890)
+..||.||...+.... -..+..+.++..+.++-.+++..+....
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 4556668877654221 1234577888888888888888877543
No 263
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.24 Score=56.73 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=59.1
Q ss_pred CcccchHHHHHHHHHHhhc---------C---CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE---------E---SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE 223 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~---------~---~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (890)
+++=|.++.+.+|.+-+.- . +..=|.++|++|.|||-+|++|+-+. .- -|++|..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---sL-----~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---SL-----NFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---ee-----eEEeecCH----
Confidence 3567889889999887742 1 24578899999999999999999876 22 23444332
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCC
Q 002700 224 NIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQ 270 (890)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 270 (890)
+++... .+.+++...+...+.-..+++.|.||.+++
T Consensus 740 ELLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 111111 122333333333344456899999999864
No 264
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.99 E-value=0.036 Score=52.91 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=31.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLR 221 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 221 (890)
++.|+|.+|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 46899999999999999998886 22446678887765543
No 265
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.97 E-value=0.008 Score=67.20 Aligned_cols=45 Identities=27% Similarity=0.394 Sum_probs=40.1
Q ss_pred cccchHHHHHHHHHHhh------cCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 157 TVVGLQLQLEQVWRCLE------EESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+++|.++.+++|++.|. ....+++.++|++|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 57999999999999983 2466799999999999999999999876
No 266
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.96 E-value=0.011 Score=56.66 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=60.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC--ccCHHHHHHHHHHHhCCCccccccccHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK--DLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIF 253 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 253 (890)
...+++|.|..|.|||||.+.++... ....+.+++.-.. ..+.... ....++... +-..-+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHH
Confidence 45699999999999999999998765 2234445543211 1111111 111121110 1111122223355
Q ss_pred HHhccCcEEEEEeccCCccc---ccccccCCCCCCCCCcEEEEecCChhHh
Q 002700 254 RILKEKKFVLLLDDLWQRVD---LTKVGVPLPGPQNNASKVVFTTRSEEVC 301 (890)
Q Consensus 254 ~~l~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~~gs~IiiTtR~~~v~ 301 (890)
+.+-.++-++++|+.-..-| ...+...+......|..||++|.+....
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 55666778899999753322 2222222221112366788888887643
No 267
>PRK06547 hypothetical protein; Provisional
Probab=95.95 E-value=0.01 Score=57.00 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=28.8
Q ss_pred HHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 167 QVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 167 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.+...+......+|+|.|.+|+||||+|+.+....
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444556778899999999999999999998875
No 268
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.95 E-value=0.041 Score=51.64 Aligned_cols=117 Identities=17% Similarity=0.120 Sum_probs=60.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEe---CCccCHHHHHHHHHHHhCC---Cc-cccccccH-----
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVV---SKDLRLENIQETIGEKIGL---LN-DTWKNRRI----- 245 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~~~~~~~~~~i~~~l~~---~~-~~~~~~~~----- 245 (890)
..|-|++..|.||||+|...+-+. ..+-..+.++.. ........++..+- .+.. .. ..+...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 578889999999999999988776 233334444332 22233333333330 1100 00 00000111
Q ss_pred --HHHHHHHHHHhcc-CcEEEEEeccCCc-----ccccccccCCCCCCCCCcEEEEecCChh
Q 002700 246 --EQKAQDIFRILKE-KKFVLLLDDLWQR-----VDLTKVGVPLPGPQNNASKVVFTTRSEE 299 (890)
Q Consensus 246 --~~~~~~l~~~l~~-kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~~gs~IiiTtR~~~ 299 (890)
.+.....++.+.. .-=|+|||++-.. .+.+.+...+. ....+.-||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~-~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK-AKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH-cCCCCCEEEEECCCCC
Confidence 1122233444443 4459999998422 23334444443 3445678999999864
No 269
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.93 E-value=0.026 Score=67.12 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHhhc---------CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQVWRCLEE---------ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..++|-+..++.|.+.+.. .....+.++|++|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999888752 124578999999999999999998876
No 270
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.93 E-value=0.077 Score=56.79 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=38.3
Q ss_pred cCcEEEEEeccCC--cccccccccCCCCCCCCCcEEEEecCChh-Hhhc-ccCCCcEeccCCChHHHHHHHHHH
Q 002700 258 EKKFVLLLDDLWQ--RVDLTKVGVPLPGPQNNASKVVFTTRSEE-VCGL-MDAQKKFKVACLSDIDAWELFRQK 327 (890)
Q Consensus 258 ~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IiiTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 327 (890)
+++-++|+|++.. ...-..+...+. ....+..+|++|.+.. +... ...-..+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LE-ep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLE-EPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHH-hCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556677742 222333333332 2223465666776654 3322 123357889999999999888653
No 271
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.93 E-value=0.029 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 272
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.92 E-value=0.063 Score=55.45 Aligned_cols=92 Identities=20% Similarity=0.298 Sum_probs=55.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhc-cC--CCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc-------cccccH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFL-QR--PTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT-------WKNRRI 245 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 245 (890)
...+.=|+|.+|+|||.|+.+++-... .. ...-..++|++....+....+. +|+++.+...+. ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 345899999999999999988765531 11 1123469999999999887765 466665433211 011233
Q ss_pred HHHH---HHHHHHh-ccCcEEEEEecc
Q 002700 246 EQKA---QDIFRIL-KEKKFVLLLDDL 268 (890)
Q Consensus 246 ~~~~---~~l~~~l-~~kr~LlVlDdv 268 (890)
+++. ..+...+ .++--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 3333 3333333 345568888987
No 273
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.92 E-value=0.018 Score=65.08 Aligned_cols=72 Identities=24% Similarity=0.282 Sum_probs=53.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRI 255 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (890)
.-++..++|++|+||||||.-++++. .-.++-|++|+......+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45799999999999999999998764 235777888888777777666655543321 1
Q ss_pred h--ccCcEEEEEeccCC
Q 002700 256 L--KEKKFVLLLDDLWQ 270 (890)
Q Consensus 256 l--~~kr~LlVlDdv~~ 270 (890)
+ .+++.-||+|.++-
T Consensus 382 l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDG 398 (877)
T ss_pred cccCCCcceEEEecccC
Confidence 2 25778899998863
No 274
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.90 E-value=0.051 Score=60.25 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=52.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHHhCCCcccc-ccccHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD-LRLENIQETIGEKIGLLNDTW-KNRRIEQKAQDIF 253 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 253 (890)
...+|.++|.+|+||||+|..++... .. ..+ .+.-|++... ....+.+..++.+++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46799999999999999999999877 32 222 3444444321 123445666777776543211 1223333333333
Q ss_pred HHhccCcEEEEEeccC
Q 002700 254 RILKEKKFVLLLDDLW 269 (890)
Q Consensus 254 ~~l~~kr~LlVlDdv~ 269 (890)
+.+.+. -++|+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 334444 568888873
No 275
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.023 Score=66.30 Aligned_cols=152 Identities=17% Similarity=0.223 Sum_probs=87.5
Q ss_pred cccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCC-----CCeEEEEEeCCccCHHHHHHHHHH
Q 002700 157 TVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTN-----FSCVIWVVVSKDLRLENIQETIGE 231 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-----f~~~~wv~~s~~~~~~~~~~~i~~ 231 (890)
.++||++++.++++.|....-.--.++|.+|+|||++|.-++.+.. ..+- ...++-. ++..+
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv-~g~VP~~L~~~~i~sL------D~g~L------ 237 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV-NGDVPESLKDKRIYSL------DLGSL------ 237 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh-cCCCCHHHcCCEEEEe------cHHHH------
Confidence 4799999999999999764333445689999999999998888762 1111 1111111 11111
Q ss_pred HhCCCccccccccHHHHHHHHHHHhc-cCcEEEEEeccCCc----------cccccc-ccCCCCCCCCCcEEEEecCChh
Q 002700 232 KIGLLNDTWKNRRIEQKAQDIFRILK-EKKFVLLLDDLWQR----------VDLTKV-GVPLPGPQNNASKVVFTTRSEE 299 (890)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~----------~~~~~l-~~~l~~~~~~gs~IiiTtR~~~ 299 (890)
..... ...+.+++...+.+.++ .++..|++|.+..- .|...+ ++.+. .+.--.|=.||-++.
T Consensus 238 -vAGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT~~EY 311 (786)
T COG0542 238 -VAGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATTLDEY 311 (786)
T ss_pred -hcccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEeccHHHH
Confidence 11111 23345666666666563 45899999998531 222222 33332 222223444554432
Q ss_pred H------hhcccCCCcEeccCCChHHHHHHHHHH
Q 002700 300 V------CGLMDAQKKFKVACLSDIDAWELFRQK 327 (890)
Q Consensus 300 v------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 327 (890)
- +......+.+.++..+.+++.++++-.
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 1 111123467889999999999998754
No 276
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.02 Score=64.49 Aligned_cols=73 Identities=27% Similarity=0.235 Sum_probs=49.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc--CHHHHHHHHHHHhCCCccccccccHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDL--RLENIQETIGEKIGLLNDTWKNRRIEQKAQDIF 253 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 253 (890)
..+-|.|.|..|+|||+||+++++... ++..-.+..++++.-. ..+.+++.+ ...+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l-------------------~~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFL-------------------NNVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHH-------------------HHHHH
Confidence 446789999999999999999999983 5555567777766432 122222211 12233
Q ss_pred HHhccCcEEEEEeccC
Q 002700 254 RILKEKKFVLLLDDLW 269 (890)
Q Consensus 254 ~~l~~kr~LlVlDdv~ 269 (890)
+.+...+.+|||||++
T Consensus 489 e~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLD 504 (952)
T ss_pred HHHhhCCcEEEEcchh
Confidence 4456688999999985
No 277
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.89 E-value=0.015 Score=56.40 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+++|+|..|.|||||.+.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45699999999999999999998865
No 278
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.023 Score=52.19 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=35.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCc
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLN 237 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 237 (890)
+|.|-|.+|+||||+|+.++++. .-.| .+...++++|++..++.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----------eeccHHHHHHHHHcCCCH
Confidence 68999999999999999999987 2111 123578899999988754
No 279
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.85 E-value=0.0058 Score=60.72 Aligned_cols=104 Identities=27% Similarity=0.351 Sum_probs=76.0
Q ss_pred cccccEEeeeccccccccCCCCCCCceEEEecccc--cccccchhhccCCcceEEEcCCCCccc---cChhccCccCCCE
Q 002700 515 WANARRISLMDNQITNLSEIPTCPHLLTLFLNKNK--LQMIHNDFFQFMPSLKVLNLSHAELTE---LPVGIAQLVSLQH 589 (890)
Q Consensus 515 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~Lr~L~l~~~~l~~---lp~~i~~l~~L~~ 589 (890)
+..+.++++.+..+..+..++.+++|+.|.++.|. ...-..-....+++|++|++++|.+.. ++ .+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhh
Confidence 34677777777777777788899999999999994 222222224566999999999998764 22 3556788999
Q ss_pred EEccCCCCCccch----hhhcCCCCcEEecCccc
Q 002700 590 LDLSESDISELPE----ELKALVNLKCLNLEWTR 619 (890)
Q Consensus 590 L~L~~~~l~~lp~----~~~~l~~L~~L~l~~~~ 619 (890)
|++.+|..+.+-. .+.-+++|.+||-....
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 9999997776532 35667888888866554
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.85 E-value=0.041 Score=59.85 Aligned_cols=84 Identities=19% Similarity=0.330 Sum_probs=50.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCcccc---ccccHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTW---KNRRIEQKAQDI 252 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 252 (890)
...++.|.|.+|+|||||+.+++.... .....++|++.... ..++ ..-+..++...+.. ...+.+++.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 456999999999999999999988762 22346777765433 3332 22244555432221 122333333333
Q ss_pred HHHhccCcEEEEEecc
Q 002700 253 FRILKEKKFVLLLDDL 268 (890)
Q Consensus 253 ~~~l~~kr~LlVlDdv 268 (890)
. ..+.-++|+|.+
T Consensus 155 ~---~~~~~lVVIDSI 167 (372)
T cd01121 155 E---ELKPDLVIIDSI 167 (372)
T ss_pred H---hcCCcEEEEcch
Confidence 2 236668888887
No 281
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.85 E-value=0.024 Score=59.99 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.....++|||++|+|||.+|+++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999987
No 282
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.83 E-value=0.049 Score=53.91 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=44.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCC---eEEEEEeCCccCHHHHHHHHHHHh--CCCccccccccHHHHHHHHH
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKFLQRPTNFS---CVIWVVVSKDLRLENIQETIGEKI--GLLNDTWKNRRIEQKAQDIF 253 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~s~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 253 (890)
||+|.|.+|+||||+|+.+..... . .... ....+.............. .... ..........+.+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~-~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN-K-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-T-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-c-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999999872 1 2222 2333332222221222111 1111 11112234556777777777
Q ss_pred HHhccCcEEE
Q 002700 254 RILKEKKFVL 263 (890)
Q Consensus 254 ~~l~~kr~Ll 263 (890)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 6666665444
No 283
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.81 E-value=0.067 Score=56.85 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=56.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCC---CCCCeEEEEEeCCccCHHHHHHHHHHHhCCCcccc-------ccccH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRP---TNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTW-------KNRRI 245 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 245 (890)
..+++-|+|.+|+|||+++.+++-.....+ ..-..++|++....++...+.+ +++.++...+.. ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 457899999999999999988764431111 1124799999998888887654 566665432210 11123
Q ss_pred HHHH---HHHHHHh-ccCcEEEEEecc
Q 002700 246 EQKA---QDIFRIL-KEKKFVLLLDDL 268 (890)
Q Consensus 246 ~~~~---~~l~~~l-~~kr~LlVlDdv 268 (890)
++.. ..+...+ .++--|||+|.+
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 3322 3333333 234557888887
No 284
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.80 E-value=0.061 Score=55.04 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=54.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc----------------
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT---------------- 239 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------------- 239 (890)
...++.|+|.+|+|||++|.++.... ...-..++|++..+. ...+.+.+ .+++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 46799999999999999999987654 123467888888654 34444443 333321110
Q ss_pred --cccccHHHHHHHHHHHhcc-CcEEEEEeccC
Q 002700 240 --WKNRRIEQKAQDIFRILKE-KKFVLLLDDLW 269 (890)
Q Consensus 240 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 269 (890)
......++....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334555666666643 55578888863
No 285
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.021 Score=62.14 Aligned_cols=45 Identities=29% Similarity=0.321 Sum_probs=35.9
Q ss_pred cccchHH---HHHHHHHHhhcC---------CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 157 TVVGLQL---QLEQVWRCLEEE---------SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 157 ~~vGr~~---~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
++-|-|+ ++++|+++|.++ =.+-|.++|++|.|||-||++++.+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4567664 667788888763 24578999999999999999999886
No 286
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.79 E-value=0.0075 Score=57.89 Aligned_cols=82 Identities=12% Similarity=0.162 Sum_probs=43.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCcccccc-ccHHHHHHHHHHHhc
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKN-RRIEQKAQDIFRILK 257 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~l~~~l~ 257 (890)
++.|.|.+|+||||+|..+.... . . .++++...... ..+....|..........+.. ....++...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 68999999999999999998764 1 1 23334333333 334445554433222222211 111223333433333
Q ss_pred cCcEEEEEecc
Q 002700 258 EKKFVLLLDDL 268 (890)
Q Consensus 258 ~kr~LlVlDdv 268 (890)
+ .-++++|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 3 337888986
No 287
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.032 Score=56.95 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=48.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCC--CCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRP--TNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR 254 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (890)
-++|.++|++|.|||+|.++++.+. .++ +.+....-+.++. ..++.+...+ .++-+..+..+|.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 5789999999999999999999997 332 3333333333321 2222222221 23445566677777
Q ss_pred HhccCcE--EEEEeccC
Q 002700 255 ILKEKKF--VLLLDDLW 269 (890)
Q Consensus 255 ~l~~kr~--LlVlDdv~ 269 (890)
.+.++.. .+.+|.|.
T Consensus 244 Lv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHhCCCcEEEEEeHHHH
Confidence 7766553 44568884
No 288
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.74 E-value=0.0017 Score=74.92 Aligned_cols=87 Identities=28% Similarity=0.238 Sum_probs=51.6
Q ss_pred hccCCcceEEEcCCC-Cccc--cChhccCccCCCEEEccCC--CCCcc----chhhhcCCCCcEEecCccccccccchhh
Q 002700 558 FQFMPSLKVLNLSHA-ELTE--LPVGIAQLVSLQHLDLSES--DISEL----PEELKALVNLKCLNLEWTRYLITIPRQL 628 (890)
Q Consensus 558 ~~~l~~Lr~L~l~~~-~l~~--lp~~i~~l~~L~~L~L~~~--~l~~l----p~~~~~l~~L~~L~l~~~~~l~~lp~~~ 628 (890)
...++.|+.|.+.++ .+.. +-.....+++|+.|+++++ .+... +.....+.+|+.|++++|..+...--..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 344677888888877 5554 3335566788888888863 22211 1234456788888888876433322111
Q ss_pred h-cCCcccccccccCcc
Q 002700 629 V-SNLSRLHVLRMFGAS 644 (890)
Q Consensus 629 i-~~l~~L~~L~l~~~~ 644 (890)
+ ..+++|++|.+..|.
T Consensus 264 l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCS 280 (482)
T ss_pred HHhhCCCcceEccCCCC
Confidence 2 236677777765554
No 289
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.73 E-value=0.13 Score=54.19 Aligned_cols=94 Identities=20% Similarity=0.164 Sum_probs=57.0
Q ss_pred HHHHhhcC---CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCcccc---c
Q 002700 168 VWRCLEEE---SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTW---K 241 (890)
Q Consensus 168 l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~ 241 (890)
|-..|..+ ..+++-|+|..|+||||||..+.... +.....++|+.....++.. .+++++...+.. .
T Consensus 41 LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~ 112 (322)
T PF00154_consen 41 LDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQ 112 (322)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE
T ss_pred cchhhccCccccCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEec
Confidence 44445433 35699999999999999999998876 2334679999987776653 345556544321 2
Q ss_pred cccHHHHHHHHHHHhcc-CcEEEEEeccC
Q 002700 242 NRRIEQKAQDIFRILKE-KKFVLLLDDLW 269 (890)
Q Consensus 242 ~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 269 (890)
+...++....+...++. ..-++|+|-|-
T Consensus 113 P~~~E~al~~~e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 113 PDTGEQALWIAEQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp -SSHHHHHHHHHHHHHTTSESEEEEE-CT
T ss_pred CCcHHHHHHHHHHHhhcccccEEEEecCc
Confidence 33445555555555543 44588889874
No 290
>PHA00729 NTP-binding motif containing protein
Probab=95.73 E-value=0.014 Score=57.90 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=28.7
Q ss_pred HHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 167 QVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 167 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.+++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555666789999999999999999999875
No 291
>PTZ00301 uridine kinase; Provisional
Probab=95.73 E-value=0.019 Score=57.08 Aligned_cols=25 Identities=32% Similarity=0.651 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998775
No 292
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.72 E-value=0.035 Score=54.12 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=63.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc------------cccc
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT------------WKNR 243 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------~~~~ 243 (890)
...+++|.|..|.|||||++.++... . .-.+.+++.-. +.......+...++...+. ....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL-K---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC-C---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 45689999999999999999998875 1 12233333211 1111111111222110000 0011
Q ss_pred cH-HHHHHHHHHHhccCcEEEEEeccCCccc---ccccccCCCCCCCCCcEEEEecCChhHhhcccCCCcEec
Q 002700 244 RI-EQKAQDIFRILKEKKFVLLLDDLWQRVD---LTKVGVPLPGPQNNASKVVFTTRSEEVCGLMDAQKKFKV 312 (890)
Q Consensus 244 ~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l 312 (890)
+. +...-.+.+.+..++-++++|+....-| .+.+...+. ....+..||++|.+...... .++++.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF-EVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11 1122234555667778999999854322 222222222 11236678888888776542 3444443
No 293
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.71 E-value=0.09 Score=56.48 Aligned_cols=57 Identities=25% Similarity=0.427 Sum_probs=41.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCC----CCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTN----FSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
...++-|+|.+|+|||++|.+++... ..... -..++|++....++...+. ++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 46789999999999999999998764 11111 1479999998888877654 3445544
No 294
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.70 E-value=0.0086 Score=54.84 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
--|+|.|++|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999987
No 295
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.019 Score=64.73 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=49.0
Q ss_pred CcccchHHHHHHHHHHhhc------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENI 225 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 225 (890)
..-+|.++.+++|++++.- -+.+++..+|++|+|||++|+.++... ...| +-++|+.-.|..+|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEI 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhh
Confidence 4459999999999999853 256899999999999999999999987 2333 33456665555554
No 296
>PRK10867 signal recognition particle protein; Provisional
Probab=95.66 E-value=0.047 Score=60.39 Aligned_cols=91 Identities=21% Similarity=0.278 Sum_probs=49.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH--HHHHHHHHHhCCCcccc-ccccHHHHHHH
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE--NIQETIGEKIGLLNDTW-KNRRIEQKAQD 251 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~~-~~~~~~~~~~~ 251 (890)
....+|.++|.+|+||||.|..++.... .. .-..++.|++. .+... +-++..+++.+.+.... ...++.+....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~-~~-~G~kV~lV~~D-~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~ 174 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLK-KK-KKKKVLLVAAD-VYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKA 174 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-Hh-cCCcEEEEEcc-ccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHH
Confidence 3467999999999999999998887762 11 12334444443 23322 23444566665432111 12344444443
Q ss_pred HHHHhccCcE-EEEEecc
Q 002700 252 IFRILKEKKF-VLLLDDL 268 (890)
Q Consensus 252 l~~~l~~kr~-LlVlDdv 268 (890)
..+..+.+.+ ++|+|-.
T Consensus 175 a~~~a~~~~~DvVIIDTa 192 (433)
T PRK10867 175 ALEEAKENGYDVVIVDTA 192 (433)
T ss_pred HHHHHHhcCCCEEEEeCC
Confidence 3333333334 6667765
No 297
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.65 E-value=0.049 Score=55.04 Aligned_cols=124 Identities=19% Similarity=0.144 Sum_probs=71.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC-----ccCHHHHHHHHHHHhCCCcccc----ccccHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK-----DLRLENIQETIGEKIGLLNDTW----KNRRIE 246 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~~----~~~~~~ 246 (890)
...+++|+|.+|+||||+++.+..-. ..-.+.++....+ .....+-..++++..+...+.. ..-+-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 55799999999999999999998765 2223334333221 1123344556666666443211 111112
Q ss_pred HHH-HHHHHHhccCcEEEEEeccCCccc------ccccccCCCCCCCCCcEEEEecCChhHhhccc
Q 002700 247 QKA-QDIFRILKEKKFVLLLDDLWQRVD------LTKVGVPLPGPQNNASKVVFTTRSEEVCGLMD 305 (890)
Q Consensus 247 ~~~-~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~~~ 305 (890)
+++ -.+.+.|.-++-++|.|..-+.-| .-.+...+ ....|-..++.|-+-.+...+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl--q~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL--QEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH--HHHhCCeEEEEEEEHHhhhhhc
Confidence 222 246677788999999998643222 11111112 1234666788888888776543
No 298
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.62 E-value=0.051 Score=57.14 Aligned_cols=88 Identities=22% Similarity=0.269 Sum_probs=47.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDL-RLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR 254 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (890)
..++++|+|++|+||||++..++... .....-..+..++..... .....+......++.+.. ...+..++...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 45799999999999999999998876 211111345555543321 122333444444554432 1223334433333
Q ss_pred HhccCcEEEEEecc
Q 002700 255 ILKEKKFVLLLDDL 268 (890)
Q Consensus 255 ~l~~kr~LlVlDdv 268 (890)
.+.+ .=+|++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3333 347777753
No 299
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.60 E-value=0.02 Score=63.80 Aligned_cols=100 Identities=21% Similarity=0.205 Sum_probs=54.0
Q ss_pred HHHHhhc-CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEE-EEEeCCcc-CHHHHHHHHHHHhCCC-cccc--c
Q 002700 168 VWRCLEE-ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVI-WVVVSKDL-RLENIQETIGEKIGLL-NDTW--K 241 (890)
Q Consensus 168 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~s~~~-~~~~~~~~i~~~l~~~-~~~~--~ 241 (890)
+++.+.. +...-.+|+|.+|+|||||++.+++... ..+-++.+ .+-|.+.. .+.++.+.+-.++-.. .+.. .
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~ 483 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSD 483 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHH
Confidence 4444433 4556889999999999999999998762 23334443 33444433 2333333321111100 0000 0
Q ss_pred cccHHHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 242 NRRIEQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 242 ~~~~~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
.......+-.+.+++ .++.+||++|++-
T Consensus 484 ~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 484 HTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 011122233345555 6799999999983
No 300
>PRK04328 hypothetical protein; Provisional
Probab=95.60 E-value=0.059 Score=55.59 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=31.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD 219 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 219 (890)
...++.|.|.+|+|||++|.++.... ...-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 46799999999999999999977664 133466788877653
No 301
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.60 E-value=0.066 Score=50.71 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=35.4
Q ss_pred HHHHHhccCcEEEEEecc----CCcccccccccCCCCCCCCCcEEEEecCChhHhhccc
Q 002700 251 DIFRILKEKKFVLLLDDL----WQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGLMD 305 (890)
Q Consensus 251 ~l~~~l~~kr~LlVlDdv----~~~~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~~~ 305 (890)
.|.+.+-+++-+|+-|.- +-+..|+-+ ..|.+-+..|..|+++|.+.++...+.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 455666678888888864 223334433 222224567999999999998866553
No 302
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.58 E-value=0.1 Score=53.29 Aligned_cols=41 Identities=29% Similarity=0.285 Sum_probs=30.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD 219 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 219 (890)
...++.|.|.+|+||||+|.++..... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 467999999999999999998776541 22457788876443
No 303
>PRK14974 cell division protein FtsY; Provisional
Probab=95.57 E-value=0.099 Score=55.91 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=49.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC--HHHHHHHHHHHhCCCccc-cccccHHHHH-HH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLR--LENIQETIGEKIGLLNDT-WKNRRIEQKA-QD 251 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 251 (890)
+..+|.++|++|+||||++..++... . ...+ .++.+. .+.+. ....++..+..++.+... ....+....+ ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 46899999999999999999888776 2 1223 333343 23332 223455566777654211 1122322222 22
Q ss_pred HHHHhccCcEEEEEeccC
Q 002700 252 IFRILKEKKFVLLLDDLW 269 (890)
Q Consensus 252 l~~~l~~kr~LlVlDdv~ 269 (890)
+...-....=++++|-+.
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 222222222388889874
No 304
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.54 E-value=0.01 Score=54.17 Aligned_cols=22 Identities=32% Similarity=0.738 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002700 180 VGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 180 v~I~G~gGiGKTtLa~~v~~~~ 201 (890)
|+|.|.+|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998873
No 305
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.16 Score=58.52 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=86.6
Q ss_pred cccchHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH
Q 002700 157 TVVGLQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE 223 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (890)
.+.|.+...+.+.+.+.- ...+.+.++|++|.|||.||+++++.. ...|-.+.+ .
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~---- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S---- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H----
Confidence 456666666655554421 245589999999999999999999965 344433221 1
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCccc-------------ccccccCCCC-CCCCCc
Q 002700 224 NIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRVD-------------LTKVGVPLPG-PQNNAS 289 (890)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~l~~-~~~~gs 289 (890)
.+ ... +...........+....+..++.|.+|+++.-.. ...+...+.+ ....+.
T Consensus 311 ~l----~sk-------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 EL----LSK-------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred HH----hcc-------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 11 100 1122233333334444467899999999853111 1112222210 122334
Q ss_pred EEEEecCChhHhhc-----ccCCCcEeccCCChHHHHHHHHHHhcCcc
Q 002700 290 KVVFTTRSEEVCGL-----MDAQKKFKVACLSDIDAWELFRQKVGEEA 332 (890)
Q Consensus 290 ~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 332 (890)
.||-||..+..... ..-+..+.++.-+.++..+.|..+.....
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKK 427 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccC
Confidence 45556655543221 12346788999999999999999886433
No 306
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.53 E-value=0.061 Score=59.50 Aligned_cols=91 Identities=20% Similarity=0.283 Sum_probs=51.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC--HHHHHHHHHHHhCCCcccc-ccccHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLR--LENIQETIGEKIGLLNDTW-KNRRIEQKAQDI 252 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 252 (890)
...++.++|.+|+||||.|..++... ..+.. ..+.-|++.. +. ..+.+...+.+.+.+.... ...++.+.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g-~kV~lV~~D~-~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQG-KKVLLVACDL-YRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCC-CeEEEEeccc-cchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 46799999999999999999988775 11112 2344444432 22 2333445566665543211 123444454444
Q ss_pred HHHhccCcE-EEEEeccC
Q 002700 253 FRILKEKKF-VLLLDDLW 269 (890)
Q Consensus 253 ~~~l~~kr~-LlVlDdv~ 269 (890)
.+....+.+ ++|+|-.-
T Consensus 175 l~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 444444445 78888763
No 307
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.53 E-value=0.019 Score=63.44 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 46899999999998888654 578899999999999999999875
No 308
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.53 E-value=0.035 Score=54.16 Aligned_cols=121 Identities=21% Similarity=0.238 Sum_probs=64.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEE---eCCccCHHHH------HHHHHHHhCCCccc---cccc
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVV---VSKDLRLENI------QETIGEKIGLLNDT---WKNR 243 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~~------~~~i~~~l~~~~~~---~~~~ 243 (890)
...+++|.|..|.|||||++.++... ....+.+++. +.. .+.... ..++++.+++.... ....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 45699999999999999999998865 2233444432 211 111111 11245555543210 0111
Q ss_pred cH-HHHHHHHHHHhccCcEEEEEeccCCc---ccccccccCCCCCCCC-CcEEEEecCChhHh
Q 002700 244 RI-EQKAQDIFRILKEKKFVLLLDDLWQR---VDLTKVGVPLPGPQNN-ASKVVFTTRSEEVC 301 (890)
Q Consensus 244 ~~-~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~~-gs~IiiTtR~~~v~ 301 (890)
+. +...-.+.+.+...+-++++|+.-.. .....+...+...... |..||++|.+....
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11 22223355566677889999997432 2222232222211122 56788888876654
No 309
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.51 E-value=0.03 Score=60.57 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=37.6
Q ss_pred CcccchHHHHHHHHHHhhcC--------------CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQVWRCLEEE--------------SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~--------------~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.+++|.++.++.+.-.+... ..+-|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999888886665431 24678999999999999999999886
No 310
>PRK07667 uridine kinase; Provisional
Probab=95.48 E-value=0.019 Score=56.67 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=29.2
Q ss_pred HHHHHHHhhc--CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 165 LEQVWRCLEE--ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 165 ~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.+.|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555543 345799999999999999999999876
No 311
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.46 E-value=0.02 Score=55.35 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+...+++|+|..|+|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345699999999999999999998765
No 312
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.072 Score=57.23 Aligned_cols=89 Identities=20% Similarity=0.185 Sum_probs=50.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDL-RLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR 254 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (890)
+.++|+++|.+|+||||++..++.... ..-..+..+...... ...+-+...++.++.+.. ...+...+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~---~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH---HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 457999999999999999999988762 222244455543221 122333444455554432 12344555444433
Q ss_pred Hhcc-CcEEEEEeccC
Q 002700 255 ILKE-KKFVLLLDDLW 269 (890)
Q Consensus 255 ~l~~-kr~LlVlDdv~ 269 (890)
.-.. +.=++++|-..
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 2221 23477788763
No 313
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.44 E-value=0.037 Score=55.41 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+|+|.|++|+||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 314
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.43 E-value=0.081 Score=54.64 Aligned_cols=88 Identities=22% Similarity=0.200 Sum_probs=57.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHH-hCCCccccccccHH---HHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEK-IGLLNDTWKNRRIE---QKAQD 251 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~---~~~~~ 251 (890)
..+++=|+|+.|+||||+|.+++-.. +.....++|++.-+.+++..+.. ++.. +..-.- ....+.+ +.+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v-~~~~~~e~q~~i~~~ 133 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLV-SQPDTGEQQLEIAEK 133 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeE-ecCCCHHHHHHHHHH
Confidence 56789999999999999999988776 44555899999999898776543 3333 221000 0122222 33444
Q ss_pred HHHHhccCcEEEEEecc
Q 002700 252 IFRILKEKKFVLLLDDL 268 (890)
Q Consensus 252 l~~~l~~kr~LlVlDdv 268 (890)
+......+--|+|+|.|
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44444445678899987
No 315
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.42 E-value=0.096 Score=54.27 Aligned_cols=127 Identities=13% Similarity=0.118 Sum_probs=67.2
Q ss_pred HHHHHHhh-cCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCC-Ccccc---
Q 002700 166 EQVWRCLE-EESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGL-LNDTW--- 240 (890)
Q Consensus 166 ~~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~~--- 240 (890)
+.++..+. .+...-++|+|..|.|||||.+.+.... ....+.+++.-. .....+-..+++..... +....
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~----~~~~G~i~~~g~-~v~~~d~~~ei~~~~~~~~q~~~~~r 173 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL----STGISQLGLRGK-KVGIVDERSEIAGCVNGVPQHDVGIR 173 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc----CCCCceEEECCE-EeecchhHHHHHHHhccccccccccc
Confidence 33344443 3456789999999999999999999876 222333443210 00000111233322221 11100
Q ss_pred -ccccHHHHHHHHHHHhc-cCcEEEEEeccCCcccccccccCCCCCCCCCcEEEEecCChhHh
Q 002700 241 -KNRRIEQKAQDIFRILK-EKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVC 301 (890)
Q Consensus 241 -~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~ 301 (890)
...+.......+...+. ..+-++++|.+.....+..+...+ ..|..||+||.+..+.
T Consensus 174 ~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 174 TDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----HAGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----hCCCEEEEEechhHHH
Confidence 00010111223333333 578899999997665555554443 2477899999876653
No 316
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.41 E-value=0.007 Score=35.73 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=10.5
Q ss_pred ceEEEcCCCCccccChhcc
Q 002700 564 LKVLNLSHAELTELPVGIA 582 (890)
Q Consensus 564 Lr~L~l~~~~l~~lp~~i~ 582 (890)
|++||+++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555544
No 317
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.41 E-value=0.015 Score=57.76 Aligned_cols=87 Identities=26% Similarity=0.308 Sum_probs=51.7
Q ss_pred CCCceEEEeccccccccc----chhhccCCcceEEEcCCCCcc----ccCh-------hccCccCCCEEEccCCCCC-cc
Q 002700 537 CPHLLTLFLNKNKLQMIH----NDFFQFMPSLKVLNLSHAELT----ELPV-------GIAQLVSLQHLDLSESDIS-EL 600 (890)
Q Consensus 537 ~~~L~~L~l~~~~~~~~~----~~~~~~l~~Lr~L~l~~~~l~----~lp~-------~i~~l~~L~~L~L~~~~l~-~l 600 (890)
+..+..++++||.+..-. ...+.+-++|++.+++.-... ++|+ .+-+|++|+..+||.|-+. +.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 556666777777643211 122445567777777754221 2333 3456788888888887554 33
Q ss_pred ch----hhhcCCCCcEEecCcccccccc
Q 002700 601 PE----ELKALVNLKCLNLEWTRYLITI 624 (890)
Q Consensus 601 p~----~~~~l~~L~~L~l~~~~~l~~l 624 (890)
|+ -|++-+.|.||.+++|. +..+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 33 36677888888888775 4433
No 318
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.40 E-value=0.059 Score=58.24 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=51.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC-ccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK-DLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR 254 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (890)
...+++++|+.|+||||++.++..... .+.....+..++... .....+-++...+.++.+... ..+..+....+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-A 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-H
Confidence 346999999999999999999998751 111123455555332 123445566666666654421 12222222222 3
Q ss_pred HhccCcEEEEEeccC
Q 002700 255 ILKEKKFVLLLDDLW 269 (890)
Q Consensus 255 ~l~~kr~LlVlDdv~ 269 (890)
.+.++ -++++|...
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 34444 456699874
No 319
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.40 E-value=0.013 Score=46.65 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+|+|.|.+|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 320
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.38 E-value=0.059 Score=55.81 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=29.7
Q ss_pred HHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 167 QVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 167 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+..+++.+.+..+|.|.|.+|+|||||+..+.+..
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34455556789999999999999999999999886
No 321
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.38 E-value=0.14 Score=54.90 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=41.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCC----CCCeEEEEEeCCccCHHHHHHHHHHHhCC
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPT----NFSCVIWVVVSKDLRLENIQETIGEKIGL 235 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (890)
...++-|+|.+|+||||++.+++... .... .-..++||+....++...+. ++++..+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 45789999999999999999997764 1110 11379999998888877654 44555443
No 322
>PRK08233 hypothetical protein; Provisional
Probab=95.38 E-value=0.014 Score=57.21 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 323
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.36 E-value=0.019 Score=53.61 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=27.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEE
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVV 215 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 215 (890)
..||.|.|.+|+||||||+++.... ......+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 4689999999999999999999998 23334555554
No 324
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.35 E-value=0.03 Score=56.79 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=35.5
Q ss_pred cccchHHHHHHHHHHhhc-------CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 157 TVVGLQLQLEQVWRCLEE-------ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.++|..-.++.|+..+.+ .+.-|++.+|.+|+||.-+|+.+++..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 466766666666666643 356799999999999999999999987
No 325
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.045 Score=53.02 Aligned_cols=120 Identities=22% Similarity=0.218 Sum_probs=60.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc---ccc--------cc
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT---WKN--------RR 244 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~--------~~ 244 (890)
...+++|+|..|.|||||++.++... ....+.+++.-....... ..+...++...+. ... -+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 45699999999999999999998865 122344444211100000 1111111110000 000 01
Q ss_pred H-HHHHHHHHHHhccCcEEEEEeccCCccc---ccccccCCCCCCCCCcEEEEecCChhHhh
Q 002700 245 I-EQKAQDIFRILKEKKFVLLLDDLWQRVD---LTKVGVPLPGPQNNASKVVFTTRSEEVCG 302 (890)
Q Consensus 245 ~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~~gs~IiiTtR~~~v~~ 302 (890)
. +...-.+...+..++-++++|+.-..-| ...+...+......|..||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1 1122245566677888999999743222 22222222111123677888888876544
No 326
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.11 Score=55.43 Aligned_cols=94 Identities=20% Similarity=0.359 Sum_probs=57.8
Q ss_pred HHHHHHHhhcC--CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCcccc--
Q 002700 165 LEQVWRCLEEE--SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTW-- 240 (890)
Q Consensus 165 ~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-- 240 (890)
..++-+.|..+ ...+|.|-|-+|||||||.-++..+... .- .+++|+..+. ..+ .+--++.++.+.+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~---~~-~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK---RG-KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHh---cC-cEEEEeCCcC--HHH-HHHHHHHhCCCccceEE
Confidence 34444445443 4569999999999999999999999832 22 6777654433 333 233456666544321
Q ss_pred -ccccHHHHHHHHHHHhccCcEEEEEecc
Q 002700 241 -KNRRIEQKAQDIFRILKEKKFVLLLDDL 268 (890)
Q Consensus 241 -~~~~~~~~~~~l~~~l~~kr~LlVlDdv 268 (890)
...+.++....+. ..++-++|+|-+
T Consensus 152 ~aEt~~e~I~~~l~---~~~p~lvVIDSI 177 (456)
T COG1066 152 LAETNLEDIIAELE---QEKPDLVVIDSI 177 (456)
T ss_pred ehhcCHHHHHHHHH---hcCCCEEEEecc
Confidence 2233333333333 368889999998
No 327
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.32 E-value=0.023 Score=57.84 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
++..+|+|.|.+|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999876
No 328
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.31 E-value=0.051 Score=50.75 Aligned_cols=103 Identities=21% Similarity=0.263 Sum_probs=55.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRI 255 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (890)
...+++|+|..|.|||||++.+.... ....+.+++.-.. .++... +-..-+...-.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~~-------------~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGSTV-------------KIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCeE-------------EEEEEc---cCCHHHHHHHHHHHH
Confidence 45799999999999999999998765 1223444442100 000000 000111222234555
Q ss_pred hccCcEEEEEeccCCc---ccccccccCCCCCCCCCcEEEEecCChhHh
Q 002700 256 LKEKKFVLLLDDLWQR---VDLTKVGVPLPGPQNNASKVVFTTRSEEVC 301 (890)
Q Consensus 256 l~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~~gs~IiiTtR~~~v~ 301 (890)
+..++-++++|+.-.. .....+...+. .. +..||++|.+....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~-~~--~~til~~th~~~~~ 130 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALK-EY--PGTVILVSHDRYFL 130 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHH-Hc--CCEEEEEECCHHHH
Confidence 6667779999997432 22233333332 11 24678888776654
No 329
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.022 Score=55.52 Aligned_cols=26 Identities=42% Similarity=0.482 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+++|+|..|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998764
No 330
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.31 E-value=0.034 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 331
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.31 E-value=0.062 Score=51.58 Aligned_cols=123 Identities=16% Similarity=0.135 Sum_probs=62.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEE-------EeCCccCH--HHHHHHHHHHhCCCccccccccHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWV-------VVSKDLRL--ENIQETIGEKIGLLNDTWKNRRIE 246 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv-------~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~ 246 (890)
...+++|+|..|.|||||++.+....... .+.+++ .+.+.... ..+...+... ... .-..-+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~--~LS~G~ 96 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG----SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDD--VLSGGE 96 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceEEECCCceEEEECCCCccccccHHHHhhcc---CCC--CCCHHH
Confidence 45699999999999999999998875211 122211 12232211 1222222210 110 111112
Q ss_pred HHHHHHHHHhccCcEEEEEeccCCccc---ccccccCCCCCCCCCcEEEEecCChhHhhcccCCCcEec
Q 002700 247 QKAQDIFRILKEKKFVLLLDDLWQRVD---LTKVGVPLPGPQNNASKVVFTTRSEEVCGLMDAQKKFKV 312 (890)
Q Consensus 247 ~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l 312 (890)
...-.+.+.+..++-++++|+.-..-| ...+...+. .. +..||++|.+..... ..++++.+
T Consensus 97 ~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~-~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 97 QQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-EL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHH-Hh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 223344555666777889998743222 222323332 11 356788887776543 23344443
No 332
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.17 Score=54.25 Aligned_cols=89 Identities=16% Similarity=0.112 Sum_probs=54.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDL-RLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR 254 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (890)
+.++++++|+.|+||||++..++... . ..-..+.++++.... ....-++..++.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~--~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-L--KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 46799999999999999999998776 2 222356666654322 223455566666665432 22345555444433
Q ss_pred Hh-ccCcEEEEEeccC
Q 002700 255 IL-KEKKFVLLLDDLW 269 (890)
Q Consensus 255 ~l-~~kr~LlVlDdv~ 269 (890)
.- .+..=+|++|-..
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 22 1345678888763
No 333
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.27 E-value=0.064 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+++|.|..|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45699999999999999999998875
No 334
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.27 E-value=0.093 Score=57.26 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=53.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCC-CCCCeEEEEEeCCccC--HHHHHHHHHHHhCCCccccccccHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRP-TNFSCVIWVVVSKDLR--LENIQETIGEKIGLLNDTWKNRRIEQKAQDI 252 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 252 (890)
..++|.++|..|+||||.+..++....... .+-..+..+++.. +. ....++..++.++.+.. ...+..+....+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L 249 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEI 249 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHH
Confidence 457999999999999999999988762111 1223455555543 23 23335666666766432 223344444444
Q ss_pred HHHhccCcEEEEEeccC
Q 002700 253 FRILKEKKFVLLLDDLW 269 (890)
Q Consensus 253 ~~~l~~kr~LlVlDdv~ 269 (890)
.+ + .+.-++++|.+.
T Consensus 250 ~~-~-~~~DlVLIDTaG 264 (388)
T PRK12723 250 TQ-S-KDFDLVLVDTIG 264 (388)
T ss_pred HH-h-CCCCEEEEcCCC
Confidence 33 2 445688899874
No 335
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.26 E-value=0.13 Score=55.16 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=42.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhcc-C-C-CCCCeEEEEEeCCccCHHHHHHHHHHHhCCC
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQ-R-P-TNFSCVIWVVVSKDLRLENIQETIGEKIGLL 236 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~-~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 236 (890)
...++-|+|.+|+|||++|..++-.... . . ..-..++|++....+....+. ++++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 4578899999999999999987754310 0 1 111369999999988887764 556666543
No 336
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.24 E-value=0.12 Score=55.12 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=40.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhcc-C-CC-CCCeEEEEEeCCccCHHHHHHHHHHHhCC
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQ-R-PT-NFSCVIWVVVSKDLRLENIQETIGEKIGL 235 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~-~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (890)
...++.|+|.+|+||||++..++..... . .. .-..++|++....+....+ ..+++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 4679999999999999999988764310 0 11 1236799998887777653 445555544
No 337
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.054 Score=53.53 Aligned_cols=45 Identities=31% Similarity=0.355 Sum_probs=34.7
Q ss_pred cccchHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 157 TVVGLQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
++=|=.++++++.+...- +..+-|..+|++|.|||-+|++|+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 345667777777665531 345678899999999999999999986
No 338
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.23 E-value=0.073 Score=58.64 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=49.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHh-----CCCccccccc----cHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKI-----GLLNDTWKNR----RIE 246 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-----~~~~~~~~~~----~~~ 246 (890)
....++|+|..|+|||||++.+.... ....++++.......++..+....+... ..-.....+. ...
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 45689999999999999999887653 2223455544333444444444333322 1100000000 011
Q ss_pred HHHHHHHHHh--ccCcEEEEEeccC
Q 002700 247 QKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 247 ~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
.....+.+++ +++.+|+++||+-
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchH
Confidence 1222344555 5799999999983
No 339
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.22 E-value=0.1 Score=54.42 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=50.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCH--HHHHHHHHHHhCCCccc-cccccHHHH-HH
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRL--ENIQETIGEKIGLLNDT-WKNRRIEQK-AQ 250 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~ 250 (890)
...+++.++|++|+||||++..++... . ..-..+..+.+.. +.. .+-+...++..+.+... ....+.... ..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~ 145 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFD 145 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHH
Confidence 356799999999999999999998876 2 2224566665432 322 23334445555533110 011222222 23
Q ss_pred HHHHHhccCcEEEEEeccC
Q 002700 251 DIFRILKEKKFVLLLDDLW 269 (890)
Q Consensus 251 ~l~~~l~~kr~LlVlDdv~ 269 (890)
.+.....+..=++++|-.-
T Consensus 146 ~l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 146 AIQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHHCCCCEEEEeCCC
Confidence 3433334445678888763
No 340
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.23 Score=53.73 Aligned_cols=149 Identities=19% Similarity=0.195 Sum_probs=80.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHh-
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL- 256 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l- 256 (890)
|--.++|+||.|||++..++++.. .|+..- +..+...+- ..+++.|
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~~n---------------------------~dLr~LL~ 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVKLD---------------------------SDLRHLLL 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeeccccCc---------------------------HHHHHHHH
Confidence 345789999999999999999986 233221 111111110 1133333
Q ss_pred -ccCcEEEEEeccCCcccc-----------c---------ccccCCCC-CCCC-CcEEE-EecCChhHh-----hcccCC
Q 002700 257 -KEKKFVLLLDDLWQRVDL-----------T---------KVGVPLPG-PQNN-ASKVV-FTTRSEEVC-----GLMDAQ 307 (890)
Q Consensus 257 -~~kr~LlVlDdv~~~~~~-----------~---------~l~~~l~~-~~~~-gs~Ii-iTtR~~~v~-----~~~~~~ 307 (890)
...|-+||+.|++...+. . -+...+.+ +... +=||| +||...+-. +.-..+
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 235678888888642111 0 01112111 1112 23555 577655432 221234
Q ss_pred CcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHHHHHHhc
Q 002700 308 KKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAMA 365 (890)
Q Consensus 308 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~ 365 (890)
-.+.|.--+.+....|+....+... ++ .+..+|.+.-.|.-+.=..++..|-
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHHHh
Confidence 4678888889999999988877533 12 3455555555555554455554443
No 341
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.20 E-value=0.16 Score=54.39 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=56.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhc-cC--CCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc-------cccccH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFL-QR--PTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT-------WKNRRI 245 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 245 (890)
...+.-|+|.+|+|||+|+.+++-... .. ...-..++|++....|....+.+ +++.++...+. ....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 456888999999999999998864431 11 11124789999999888887654 56666543211 012233
Q ss_pred HHHH---HHHHHHh-ccCcEEEEEecc
Q 002700 246 EQKA---QDIFRIL-KEKKFVLLLDDL 268 (890)
Q Consensus 246 ~~~~---~~l~~~l-~~kr~LlVlDdv 268 (890)
++.. ..+...+ ..+--|||+|.+
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3322 2232333 234557888887
No 342
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.18 E-value=0.12 Score=53.11 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=57.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhc-cCCCCCCeEEEEEeCCcc-CHHHHHHHHHHHhCCCcccc----ccccH---
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFL-QRPTNFSCVIWVVVSKDL-RLENIQETIGEKIGLLNDTW----KNRRI--- 245 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~--- 245 (890)
.+-..++|.|..|+|||+|+.++.+... ..+.+-+.++++-+++.. +..++...+.+.-....... .+...
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 3556789999999999999999887751 012234678888887654 45566666555322211100 11111
Q ss_pred ---HHHHHHHHHHhc---cCcEEEEEeccC
Q 002700 246 ---EQKAQDIFRILK---EKKFVLLLDDLW 269 (890)
Q Consensus 246 ---~~~~~~l~~~l~---~kr~LlVlDdv~ 269 (890)
.-....+.++++ ++++|+++||+-
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 111234556663 689999999984
No 343
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.18 E-value=0.022 Score=57.55 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
-|.|.|++|+||||+|+.+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 344
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.17 E-value=0.12 Score=53.98 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=23.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999998876654
No 345
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.16 E-value=0.11 Score=51.84 Aligned_cols=95 Identities=22% Similarity=0.323 Sum_probs=55.8
Q ss_pred HHHhhc-CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHHhCCCccc----ccc
Q 002700 169 WRCLEE-ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD-LRLENIQETIGEKIGLLNDT----WKN 242 (890)
Q Consensus 169 ~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~----~~~ 242 (890)
++.+.. .+..-++|.|.+|+|||+|+..+.+.. . -+.++++.+++. ....++.+.+...-...... ...
T Consensus 6 ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 6 IDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-D----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-T----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eccccccccCCEEEEEcCcccccchhhHHHHhcc-c----ccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 344433 344689999999999999999999886 1 245577777755 34556666554431111100 011
Q ss_pred ccH-HH-----HHHHHHHHh--ccCcEEEEEecc
Q 002700 243 RRI-EQ-----KAQDIFRIL--KEKKFVLLLDDL 268 (890)
Q Consensus 243 ~~~-~~-----~~~~l~~~l--~~kr~LlVlDdv 268 (890)
... .. ..-.+.+++ +++.+|+++||+
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred hhHHHHhhhhccchhhhHHHhhcCCceeehhhhh
Confidence 111 11 112233444 689999999998
No 346
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.15 E-value=0.018 Score=57.83 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=24.2
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 347
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.12 E-value=0.018 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998775
No 348
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.08 E-value=0.054 Score=58.71 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=50.8
Q ss_pred CCcccchHHHHHHHHHHhhcC--------------CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEe-CCc
Q 002700 155 EPTVVGLQLQLEQVWRCLEEE--------------SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVV-SKD 219 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~--------------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-s~~ 219 (890)
...++|.+..++.+..++... ..+.|.++|++|+|||++|+.+........-+++..-|... ...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 356899999999888777430 13678999999999999999998886211122333322221 122
Q ss_pred cCHHHHHHHHHHHh
Q 002700 220 LRLENIQETIGEKI 233 (890)
Q Consensus 220 ~~~~~~~~~i~~~l 233 (890)
.+...+.+.+.+..
T Consensus 94 ~d~e~~ir~L~~~A 107 (443)
T PRK05201 94 RDVESIIRDLVEIA 107 (443)
T ss_pred CCHHHHHHHHHHHH
Confidence 34556666665543
No 349
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.06 E-value=0.086 Score=52.40 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=33.5
Q ss_pred HHHHHHhccCcEEEEEeccC---CcccccccccCCCC-CCCCCcEEEEecCChhHhhcc
Q 002700 250 QDIFRILKEKKFVLLLDDLW---QRVDLTKVGVPLPG-PQNNASKVVFTTRSEEVCGLM 304 (890)
Q Consensus 250 ~~l~~~l~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~~gs~IiiTtR~~~v~~~~ 304 (890)
-.+.+.|-..+-+|+-|+-- +...-..+...+.. ....|..||+.|.++.++...
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 35667777888899999852 11111112111110 234578899999999998753
No 350
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.06 E-value=0.61 Score=49.14 Aligned_cols=167 Identities=13% Similarity=0.060 Sum_probs=91.0
Q ss_pred HHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhhc-------cCCCCCCeEEEEEe-CCccCHHHHHHHHHHHhCC
Q 002700 165 LEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKFL-------QRPTNFSCVIWVVV-SKDLRLENIQETIGEKIGL 235 (890)
Q Consensus 165 ~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~-------~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~ 235 (890)
++.+.+.+..+.. .+..++|..|.||+++|..+.+... ....+-+-+.++.. +.....+++. .+.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 4445555655544 4666999999999999999987751 01112222333321 1122222222 22222221
Q ss_pred CccccccccHHHHHHHHHHHhccCcEEEEEeccCCc--ccccccccCCCCCCCCCcEEEEec-CChhHhh-cccCCCcEe
Q 002700 236 LNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR--VDLTKVGVPLPGPQNNASKVVFTT-RSEEVCG-LMDAQKKFK 311 (890)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IiiTt-R~~~v~~-~~~~~~~~~ 311 (890)
.. .-.+.+-++|+||+..- .....+...+. ....++.+|++| ....+.. .......++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LE-EPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIE-EPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhh-CCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 10 00146778889998532 23445555555 344566666555 4444432 234457899
Q ss_pred ccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHHHH
Q 002700 312 VACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALIT 359 (890)
Q Consensus 312 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 359 (890)
+.++++++..+.+... + .+ .+.+..++...+|.--|+..
T Consensus 146 f~~l~~~~l~~~l~~~-~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-N-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHc-C-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 9999999998887654 1 11 13456666667763345544
No 351
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.05 E-value=0.48 Score=47.75 Aligned_cols=209 Identities=12% Similarity=0.156 Sum_probs=112.9
Q ss_pred cccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhcc---CCCCCCeEEEEEeCCc----------c---
Q 002700 157 TVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQ---RPTNFSCVIWVVVSKD----------L--- 220 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~----------~--- 220 (890)
.+.++++....+......+...-..++|++|.||-|.+..+.++.-- .+-.-+..-|.+-++. .
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 36778888888877776677889999999999999999888776511 0112234445433322 1
Q ss_pred --------CHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcE-EEEEeccCC--cccccccccCCCCCCCCCc
Q 002700 221 --------RLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKF-VLLLDDLWQ--RVDLTKVGVPLPGPQNNAS 289 (890)
Q Consensus 221 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~--~~~~~~l~~~l~~~~~~gs 289 (890)
....+.++++++.+-..+ + +.-..+.| ++|+-.+++ .+.-..++.... .-...+
T Consensus 94 itPSDaG~~DRvViQellKevAQt~q------i--------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME-kYs~~~ 158 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQ------I--------ETQGQRPFKVVVINEADELTRDAQHALRRTME-KYSSNC 158 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcc------h--------hhccccceEEEEEechHhhhHHHHHHHHHHHH-HHhcCc
Confidence 122334444444321110 0 00112333 444444432 111122222111 223356
Q ss_pred EEEEecCChh-H-hhcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcc-hHHHHHHHH-hc
Q 002700 290 KVVFTTRSEE-V-CGLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLP-LALITVGRA-MA 365 (890)
Q Consensus 290 ~IiiTtR~~~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~g~~-l~ 365 (890)
|+|+.-.+.. + ...-..--.+.++..+++|....+++.+..+...-+ .+++.+|+++++|.- -||-++-.. +.
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 6665332211 1 111111235788999999999999998876664333 588999999999875 444433221 11
Q ss_pred CC--------CCHHHHHHHHHHHhcc
Q 002700 366 CK--------KTPEEWRYAIQVLRTS 383 (890)
Q Consensus 366 ~~--------~~~~~w~~~~~~l~~~ 383 (890)
.. -..-+|+-+..+....
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHH
Confidence 11 2345798877765543
No 352
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.04 E-value=0.043 Score=57.14 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 166 EQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 166 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..+++.+...+ +-|.++|+.|+|||++++......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC
Confidence 44555555554 456899999999999999988765
No 353
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.02 E-value=0.0078 Score=35.53 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=11.0
Q ss_pred CCCEEEccCCCCCccchhhh
Q 002700 586 SLQHLDLSESDISELPEELK 605 (890)
Q Consensus 586 ~L~~L~L~~~~l~~lp~~~~ 605 (890)
+|++|++++|.++.+|++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35555666655555555443
No 354
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.01 E-value=0.016 Score=51.55 Aligned_cols=27 Identities=41% Similarity=0.541 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHHhhhccCCCCCC
Q 002700 180 VGLYGMGGVGKTTLLTHINNKFLQRPTNFS 209 (890)
Q Consensus 180 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~ 209 (890)
|.|+|.+|+||||+|+.++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 6799999999999999999987 45564
No 355
>PTZ00035 Rad51 protein; Provisional
Probab=95.00 E-value=0.22 Score=53.63 Aligned_cols=58 Identities=28% Similarity=0.323 Sum_probs=40.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccC----CCCCCeEEEEEeCCccCHHHHHHHHHHHhCC
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQR----PTNFSCVIWVVVSKDLRLENIQETIGEKIGL 235 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (890)
...++.|+|.+|+||||++..++-.. .. ...-..++|++....++...+ ..+++..+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 46799999999999999999887554 21 112245779988777776663 444555544
No 356
>PRK03839 putative kinase; Provisional
Probab=94.96 E-value=0.02 Score=55.87 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 357
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.95 E-value=0.12 Score=51.14 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=29.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCC-------CCeEEEEEeCCc
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTN-------FSCVIWVVVSKD 219 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~~s~~ 219 (890)
..++.|.|.+|+||||++..+.......... -..++|+.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 3589999999999999999998887422111 136888876655
No 358
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.95 E-value=0.055 Score=50.21 Aligned_cols=42 Identities=33% Similarity=0.330 Sum_probs=31.4
Q ss_pred EEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHH
Q 002700 180 VGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQE 227 (890)
Q Consensus 180 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 227 (890)
|.++|.+|+|||+||+.+++.. . ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEecccccccccee
Confidence 6799999999999999999886 1 2344567777777766543
No 359
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.94 E-value=0.045 Score=49.66 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=28.7
Q ss_pred HHHHHHHHhhc--CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 164 QLEQVWRCLEE--ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 164 ~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+.+++.+.+.. ....+|.+.|.-|+||||+++.+++..
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34444444433 345699999999999999999999886
No 360
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.93 E-value=0.097 Score=51.41 Aligned_cols=38 Identities=24% Similarity=0.160 Sum_probs=28.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD 219 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 219 (890)
++.|.|.+|+|||++|.++..... ..-..++|++....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC
Confidence 367999999999999999877752 23356778876543
No 361
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.90 E-value=0.088 Score=51.10 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999887
No 362
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.90 E-value=0.084 Score=59.28 Aligned_cols=94 Identities=23% Similarity=0.326 Sum_probs=53.1
Q ss_pred HHHHHHhhcC--CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCcccc---
Q 002700 166 EQVWRCLEEE--SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTW--- 240 (890)
Q Consensus 166 ~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--- 240 (890)
..+-+.|..+ ...++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++.. -++.++...+..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~ 140 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLL 140 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEe
Confidence 3344445432 456999999999999999999988762 22346778776443 333322 245555422111
Q ss_pred ccccHHHHHHHHHHHhccCcEEEEEecc
Q 002700 241 KNRRIEQKAQDIFRILKEKKFVLLLDDL 268 (890)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv 268 (890)
...+.+++...+. ..+.-++|+|.+
T Consensus 141 ~e~~l~~i~~~i~---~~~~~lVVIDSI 165 (446)
T PRK11823 141 AETNLEAILATIE---EEKPDLVVIDSI 165 (446)
T ss_pred CCCCHHHHHHHHH---hhCCCEEEEech
Confidence 1123333333332 235557888886
No 363
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.90 E-value=0.056 Score=56.10 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=57.3
Q ss_pred cchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCcc
Q 002700 159 VGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLND 238 (890)
Q Consensus 159 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 238 (890)
.|...+..+.+..+......+|.|.|..|+||||++.++.+... ..-..++.+.-...+.... ..+....
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~-----~~q~~v~-- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPG-----INQVQVN-- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCC-----ceEEEeC--
Confidence 34443333333333344557899999999999999999877651 1112233322111111110 0111111
Q ss_pred ccccccHHHHHHHHHHHhccCcEEEEEeccCCcccccc
Q 002700 239 TWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQRVDLTK 276 (890)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~ 276 (890)
..........++..++..+=.|+++++.+.+....
T Consensus 132 ---~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 132 ---EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred ---CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 11111345567777888888999999987765443
No 364
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.89 E-value=0.057 Score=54.93 Aligned_cols=87 Identities=24% Similarity=0.245 Sum_probs=50.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCC-CCeEEEEEeCCccCHHHHHHHHHHHhCCCccc-------------cc
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTN-FSCVIWVVVSKDLRLENIQETIGEKIGLLNDT-------------WK 241 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------------~~ 241 (890)
...++.|.|.+|+|||++|.++..... .. -..++|++...+. ..+.+.+. .++..... ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 457999999999999999999765541 22 3567888765543 34333322 33321100 00
Q ss_pred -----cccHHHHHHHHHHHhcc-CcEEEEEecc
Q 002700 242 -----NRRIEQKAQDIFRILKE-KKFVLLLDDL 268 (890)
Q Consensus 242 -----~~~~~~~~~~l~~~l~~-kr~LlVlDdv 268 (890)
..+..+....+.+.++. +...+|+|.+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23556666666666543 4467777775
No 365
>PRK06217 hypothetical protein; Validated
Probab=94.85 E-value=0.043 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999886
No 366
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.79 E-value=0.12 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+|+|.|.+|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 367
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.045 Score=49.37 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=40.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL 256 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 256 (890)
.+-|.|.|-+|+||||+|.+++... ..-|+++|+-.....++...-++... .--+.+.+...|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~--------~~~~i~isd~vkEn~l~~gyDE~y~c-----~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT--------GLEYIEISDLVKENNLYEGYDEEYKC-----HILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh--------CCceEehhhHHhhhcchhcccccccC-----ccccHHHHHHHHHHHH
Confidence 3568899999999999999998654 22356666544433333322222211 1234555566665555
Q ss_pred cc
Q 002700 257 KE 258 (890)
Q Consensus 257 ~~ 258 (890)
.+
T Consensus 74 ~~ 75 (176)
T KOG3347|consen 74 IE 75 (176)
T ss_pred hc
Confidence 44
No 368
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.75 E-value=0.026 Score=55.60 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+|+|.|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 369
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.74 E-value=0.043 Score=59.74 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+++|+|++|.||||||+.+.--.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 44689999999999999999986654
No 370
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.74 E-value=0.063 Score=58.83 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=53.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC-HHHHHHHHHHHhCCCccc----cccccH-----
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLR-LENIQETIGEKIGLLNDT----WKNRRI----- 245 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~----- 245 (890)
....++|+|..|+|||||++.+.... ..+.++.+-+++... ..++...++..-+....- ..+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45689999999999999999998653 225666666665543 344555544432221100 011111
Q ss_pred -HHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 246 -EQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 246 -~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
...+..+.+++ +++.+|+++||+-
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 11223345555 5799999999983
No 371
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.72 E-value=0.073 Score=50.99 Aligned_cols=58 Identities=22% Similarity=0.205 Sum_probs=38.6
Q ss_pred ccchHHHHHHHHHHhhc--CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 002700 158 VVGLQLQLEQVWRCLEE--ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK 218 (890)
Q Consensus 158 ~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 218 (890)
+||....+.++.+.+.. ....-|.|+|..|+||+.+|+.+++.- ...-...+-|+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~~ 60 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS---PRKNGPFISVNCAA 60 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS---TTTTS-EEEEETTT
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh---hcccCCeEEEehhh
Confidence 47888888888877754 333667799999999999999999864 22223445555553
No 372
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.71 E-value=0.06 Score=52.34 Aligned_cols=23 Identities=39% Similarity=0.742 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 373
>PRK04040 adenylate kinase; Provisional
Probab=94.71 E-value=0.027 Score=55.14 Aligned_cols=24 Identities=42% Similarity=0.592 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999886
No 374
>PRK05439 pantothenate kinase; Provisional
Probab=94.70 E-value=0.21 Score=52.58 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+..-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999988765
No 375
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.033 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+.|.+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467889999999999999998887
No 376
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.69 E-value=0.12 Score=57.37 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=58.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHHhCCCccc----cccccH----
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDL-RLENIQETIGEKIGLLNDT----WKNRRI---- 245 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~---- 245 (890)
.+...++|.|.+|+|||||+.++.+.. . +.+-+.++++-+++.. ...++...+...-...... ..+.+.
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 455789999999999999999998886 2 2355777777776554 3455555555432211100 011111
Q ss_pred --HHHHHHHHHHh--c-cCcEEEEEeccC
Q 002700 246 --EQKAQDIFRIL--K-EKKFVLLLDDLW 269 (890)
Q Consensus 246 --~~~~~~l~~~l--~-~kr~LlVlDdv~ 269 (890)
...+..+.+++ + ++.+|+++||+-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 12233456666 3 799999999983
No 377
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.68 E-value=0.044 Score=52.10 Aligned_cols=119 Identities=24% Similarity=0.244 Sum_probs=61.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRI 255 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (890)
...+++|+|..|.|||||++.+.... ....+.+++........ ........++...+ -..-+...-.+...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q---lS~G~~~r~~l~~~ 94 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKL--PLEELRRRIGYVPQ---LSGGQRQRVALARA 94 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccC--CHHHHHhceEEEee---CCHHHHHHHHHHHH
Confidence 34699999999999999999998875 22345555432111110 00111112221100 01112222335555
Q ss_pred hccCcEEEEEeccCCccc---ccccccCCCCCCCCCcEEEEecCChhHhhc
Q 002700 256 LKEKKFVLLLDDLWQRVD---LTKVGVPLPGPQNNASKVVFTTRSEEVCGL 303 (890)
Q Consensus 256 l~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~ 303 (890)
+...+-++++|+....-| ...+...+......+..++++|.+......
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 556678999999853222 222222221011225678888887766543
No 378
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.65 Score=52.91 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=86.6
Q ss_pred cccchHHHHHHHHHHhhcC-------------CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH
Q 002700 157 TVVGLQLQLEQVWRCLEEE-------------SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE 223 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~-------------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (890)
++-|..+.++.+.+.+.-+ ...-|.++|++|+|||-||.+++... . .-+|+|..+
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~-----~~fisvKGP---- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---N-----LRFISVKGP---- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---C-----eeEEEecCH----
Confidence 4556666666666665321 23458899999999999999998775 1 223555443
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCCc-------------ccccccccCCCC-CCCCCc
Q 002700 224 NIQETIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQR-------------VDLTKVGVPLPG-PQNNAS 289 (890)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------------~~~~~l~~~l~~-~~~~gs 289 (890)
+++... +| .+++.......+.-.-|++.+.+|..++- .....+.-.+.+ .+-.|.
T Consensus 736 ElL~Ky---IG--------aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 736 ELLSKY---IG--------ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred HHHHHH---hc--------ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 222211 11 22222222333333569999999997541 012222222221 123455
Q ss_pred EEEE-ecCChhH----hhcccCCCcEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcch
Q 002700 290 KVVF-TTRSEEV----CGLMDAQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPL 355 (890)
Q Consensus 290 ~Iii-TtR~~~v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 355 (890)
-|+- |||..-+ .+...-++.+.-+.-++.|-.++|...........+.+ .+.++.+.+|.--
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vd----l~~~a~~T~g~tg 871 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVD----LECLAQKTDGFTG 871 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccc----hHHHhhhcCCCch
Confidence 5555 4554322 11111223334445556666777766554222122222 3455566665543
No 379
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.67 E-value=0.14 Score=57.56 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=34.7
Q ss_pred HHHHHHhhcC--CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 002700 166 EQVWRCLEEE--SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK 218 (890)
Q Consensus 166 ~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 218 (890)
..+-+.|..+ ...++.|.|.+|+|||||+.++..... ..-..++|++..+
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EE 132 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEE 132 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcC
Confidence 3444445332 457999999999999999999987762 2223577876543
No 380
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.67 E-value=0.063 Score=62.42 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=55.8
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
+.++|.+..++.+...+... +.+.++|.+|+||||+|+.+.+.. . ..+++..+|..-+ ..+...+++.+..+++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l-~-~~~~~~~~~~~np-~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL-P-KEELQDILVYPNP-EDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc-C-hHhHHHheEeeCC-CcchHHHHHHHHHhcC
Confidence 46899999998888877655 478999999999999999999876 2 3456778887653 3356666666666554
No 381
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.072 Score=54.26 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.+..++|||++|.|||-+|++|+...
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 35689999999999999999999987
No 382
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.65 E-value=0.077 Score=58.38 Aligned_cols=91 Identities=22% Similarity=0.251 Sum_probs=50.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc----cccc-cH----
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT----WKNR-RI---- 245 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~-~~---- 245 (890)
.....++|.|..|+|||||++.+.... . ....++.....+.....++....+..-+..... ..+. ..
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~---~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNT---D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC---C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 345689999999999999999888764 1 122333322223334445555444332221100 0111 11
Q ss_pred -HHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 246 -EQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 246 -~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
...+..+.+++ +++.+|+++||+-
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 11223355555 5789999999983
No 383
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.65 E-value=0.023 Score=49.87 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002700 180 VGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 180 v~I~G~gGiGKTtLa~~v~~~~ 201 (890)
|-|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988876
No 384
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.64 E-value=0.14 Score=60.31 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=58.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc---cccccHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT---WKNRRIEQKAQDI 252 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 252 (890)
..+++-|+|.+|+||||||.+++... ...-..++|+.....++. ..+++++...+. ....+.++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 46799999999999999998876654 223466899988777663 366777764332 1233445555555
Q ss_pred HHHhc-cCcEEEEEeccC
Q 002700 253 FRILK-EKKFVLLLDDLW 269 (890)
Q Consensus 253 ~~~l~-~kr~LlVlDdv~ 269 (890)
...++ ++--|||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55553 467789999974
No 385
>PRK00625 shikimate kinase; Provisional
Probab=94.63 E-value=0.027 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 386
>PRK15453 phosphoribulokinase; Provisional
Probab=94.62 E-value=0.16 Score=52.21 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=44.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc--CHHHHHHHHH--HHhCCCccc--cccccHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDL--RLENIQETIG--EKIGLLNDT--WKNRRIEQKA 249 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~--~~l~~~~~~--~~~~~~~~~~ 249 (890)
+..+|+|.|.+|+||||+|+.+.+.. . ..-.....++..... +...+-..+. +.-+..-+. ....+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if-~--~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF-R--RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-h--hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45799999999999999999998765 1 111123334332222 3223222221 222222112 3455677777
Q ss_pred HHHHHHhcc
Q 002700 250 QDIFRILKE 258 (890)
Q Consensus 250 ~~l~~~l~~ 258 (890)
+.++.+..+
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 777776553
No 387
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.56 E-value=0.18 Score=47.43 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 388
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.55 E-value=0.16 Score=56.06 Aligned_cols=89 Identities=16% Similarity=0.205 Sum_probs=52.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC-HHHHHHHHHHHhCCCccc----cccccH-----
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLR-LENIQETIGEKIGLLNDT----WKNRRI----- 245 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~----- 245 (890)
....++|+|..|+|||||++++++.. . .+.++.+-+++... ..++....+..-+..... ..+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-D----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-C----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 55689999999999999999998764 1 24555565655443 334444444332221100 011111
Q ss_pred -HHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 246 -EQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 246 -~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
...+..+.+++ +++.+|+++||+-
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 11223345555 5799999999983
No 389
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.55 E-value=0.12 Score=56.23 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..++.++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 390
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.54 E-value=0.23 Score=50.46 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=32.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETI 229 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 229 (890)
...++.|.|.+|+||||+|.+++.... +. -..+++++.. .+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~-g~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QN-GYSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hC-CCcEEEEeCC--CCHHHHHHHH
Confidence 446999999999999999877665541 12 2445666533 3445555555
No 391
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.28 Score=55.85 Aligned_cols=46 Identities=26% Similarity=0.249 Sum_probs=34.9
Q ss_pred CcccchHHHHHHH---HHHhhcC---------CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQV---WRCLEEE---------SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l---~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.++.|.|+.++++ ++.|.++ =++-|..+|++|.|||.||++++.+.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 4568888766555 5555542 14568899999999999999999986
No 392
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.53 E-value=0.16 Score=48.32 Aligned_cols=117 Identities=21% Similarity=0.167 Sum_probs=61.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEE---EEEeCCccCHHHHHHHHHHHhCC---Ccc-ccc--c-----
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVI---WVVVSKDLRLENIQETIGEKIGL---LND-TWK--N----- 242 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~---wv~~s~~~~~~~~~~~i~~~l~~---~~~-~~~--~----- 242 (890)
...|-|++..|.||||.|..++-+.. .+--.++ |+-.........++..+ .+.. ... .+. +
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~---~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL---GHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 36788888899999999999887762 2222332 22222223333343332 1110 000 000 1
Q ss_pred ccHHHHHHHHHHHhcc-CcEEEEEeccCCc-----ccccccccCCCCCCCCCcEEEEecCChh
Q 002700 243 RRIEQKAQDIFRILKE-KKFVLLLDDLWQR-----VDLTKVGVPLPGPQNNASKVVFTTRSEE 299 (890)
Q Consensus 243 ~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~~gs~IiiTtR~~~ 299 (890)
....+.....++.+.. .-=|+|||.+-.. .+.+.+...+. ....+.-||+|-|+..
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~-~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ-ERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH-hCCCCCEEEEECCCCC
Confidence 1112223334455544 4459999998422 23334444443 4455778999999863
No 393
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.52 E-value=0.059 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+++|.|..|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998775
No 394
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.52 E-value=0.15 Score=48.40 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..++.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999998874
No 395
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.50 E-value=0.06 Score=49.74 Aligned_cols=23 Identities=43% Similarity=0.735 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 396
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.0033 Score=62.49 Aligned_cols=98 Identities=28% Similarity=0.293 Sum_probs=73.2
Q ss_pred cccccEEeeeccccccccCCCCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccCh--hccCccCCCEEEc
Q 002700 515 WANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPV--GIAQLVSLQHLDL 592 (890)
Q Consensus 515 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~--~i~~l~~L~~L~L 592 (890)
+.+++.|+..++.+.++.-..+|+.|.+|.|+-|++..+.+ |..++.|+.|.|+.|.|..+-+ -+.++++|+.|-|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34677788888888877767788899999998888777655 6788889999999888876642 4667888888888
Q ss_pred cCCCCC-ccch-----hhhcCCCCcEEe
Q 002700 593 SESDIS-ELPE-----ELKALVNLKCLN 614 (890)
Q Consensus 593 ~~~~l~-~lp~-----~~~~l~~L~~L~ 614 (890)
..|.-. +-+. -+..|+||+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 876433 2222 356788888886
No 397
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.47 E-value=0.2 Score=53.25 Aligned_cols=90 Identities=21% Similarity=0.260 Sum_probs=51.2
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeC-CccCHHHHHHHHHHHhCCCccc----ccccc-----
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVS-KDLRLENIQETIGEKIGLLNDT----WKNRR----- 244 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~----~~~~~----- 244 (890)
.....++|+|..|+|||||.+.+.... . -+..+..-++ ...+...+.......-+..... ..+..
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 345689999999999999999988765 1 2333334444 3334555555554443221100 00111
Q ss_pred -HHHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 245 -IEQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 245 -~~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
.....-.+.+++ ++|.+|+++||+-
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 111222344444 5799999999983
No 398
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.47 E-value=0.027 Score=55.22 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998875
No 399
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.46 E-value=1 Score=48.00 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=33.4
Q ss_pred cEeccCCChHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCcchHH
Q 002700 309 KFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLAL 357 (890)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 357 (890)
++++++++.+|+..++.-.............+...+++.--.+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999998876654432222223345666666678988543
No 400
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.45 E-value=0.032 Score=54.00 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..+|+|-||=|+||||||+++.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 401
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.43 E-value=0.12 Score=60.28 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=50.2
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIG 234 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (890)
+.++|.++.++.+...+.... -+.++|++|+||||+|+.+.+.. . ...|...+++.-+ ..+...+++.++.+++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYPNP-EDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEeCC-CCCchHHHHHHHHhhc
Confidence 468999998888877776553 56699999999999999999887 2 2233333333322 2234455666666654
No 402
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.42 E-value=0.054 Score=55.20 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=42.9
Q ss_pred HHHHHHhhc--CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHH
Q 002700 166 EQVWRCLEE--ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQ 226 (890)
Q Consensus 166 ~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 226 (890)
.+++..+.. ++..+|+|.|.||+|||||.-.+...+ ....+=-.++-|+-|.+++-..++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccc
Confidence 345555543 567799999999999999999998887 333444456777777777655544
No 403
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.41 E-value=0.097 Score=53.70 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=50.3
Q ss_pred CCeeEEEEEcCCCChHHHHH-HHHHhhhccCCCCCCeE-EEEEeCCcc-CHHHHHHHHHHHhCCCccc----cccccHHH
Q 002700 175 ESVGIVGLYGMGGVGKTTLL-THINNKFLQRPTNFSCV-IWVVVSKDL-RLENIQETIGEKIGLLNDT----WKNRRIEQ 247 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~ 247 (890)
.+-.-++|.|.+|+|||+|| .++.+.. +-+.+ +++-+++.. ...++...+.+.-...... ..+.....
T Consensus 67 grGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~ 141 (274)
T cd01132 67 GRGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPL 141 (274)
T ss_pred ccCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhH
Confidence 35568999999999999996 5565542 22333 556566553 4556666655432111100 01111111
Q ss_pred ------HHHHHHHHh--ccCcEEEEEeccC
Q 002700 248 ------KAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 248 ------~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
.+-.+.+++ +++.+|+|+||+-
T Consensus 142 r~~a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 142 QYLAPYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 122333444 5799999999984
No 404
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.40 E-value=0.25 Score=54.82 Aligned_cols=94 Identities=17% Similarity=0.101 Sum_probs=53.5
Q ss_pred CCeeEEEEEcCCCChHHHHH-HHHHhhhccC-----CCCCCeEEEEEeCCccCHHHHHHHHHHHhC-CCccc----cccc
Q 002700 175 ESVGIVGLYGMGGVGKTTLL-THINNKFLQR-----PTNFSCVIWVVVSKDLRLENIQETIGEKIG-LLNDT----WKNR 243 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~----~~~~ 243 (890)
++..-++|.|..|+|||+|| ..+.+.. .+ ..+-+.++++-+++..+...-+.+.+++-+ +.... ..+.
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCC
Confidence 35568899999999999997 5566653 11 123456778888776543332344444433 11110 0111
Q ss_pred c-HHH-----HHHHHHHHh--ccCcEEEEEeccC
Q 002700 244 R-IEQ-----KAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 244 ~-~~~-----~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
. ..+ ..-.+.+++ +++.+|+|+||+-
T Consensus 266 p~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 1 111 122344444 5799999999984
No 405
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.40 E-value=0.16 Score=56.54 Aligned_cols=87 Identities=22% Similarity=0.246 Sum_probs=49.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDL-RLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRI 255 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (890)
.+++.++|++|+||||++..++... ........+..|+..... .....+....+.++.+.. ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 3699999999999999999988776 201223456666653321 112233444455554432 12233444444433
Q ss_pred hccCcEEEEEecc
Q 002700 256 LKEKKFVLLLDDL 268 (890)
Q Consensus 256 l~~kr~LlVlDdv 268 (890)
+. ..=++++|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 23 3567888976
No 406
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.37 E-value=0.059 Score=57.72 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=39.2
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..+||.+..+..+.-.+.+++..-|.|.|..|+||||+++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3579999999888777777767778899999999999999997654
No 407
>PRK05922 type III secretion system ATPase; Validated
Probab=94.36 E-value=0.12 Score=56.85 Aligned_cols=90 Identities=14% Similarity=0.231 Sum_probs=50.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHHhCCCcccc----cccc-----
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD-LRLENIQETIGEKIGLLNDTW----KNRR----- 244 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~----~~~~----- 244 (890)
.....++|+|..|+|||||.+.+.... . .+....+.++.. ......+.+............ .+..
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~----~-~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS----K-STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC----C-CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 355679999999999999999998764 1 233333333332 233444444433332211000 1111
Q ss_pred -HHHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 245 -IEQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 245 -~~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
....+..+.+++ +++.+|+++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 112233455666 5799999999984
No 408
>PRK08149 ATP synthase SpaL; Validated
Probab=94.35 E-value=0.18 Score=55.45 Aligned_cols=90 Identities=13% Similarity=0.197 Sum_probs=51.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC-ccCHHHHHHHHHHHhCCCccc----ccccc-----
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK-DLRLENIQETIGEKIGLLNDT----WKNRR----- 244 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~----~~~~~----- 244 (890)
.....++|+|.+|+|||||+..++... .-+.++...+.. ..+...+.............. ..+..
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 355689999999999999999998754 223333344443 334455555555432211100 01111
Q ss_pred -HHHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 245 -IEQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 245 -~~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
....+..+.+++ ++|.+|+++||+-
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchH
Confidence 112233344555 5799999999983
No 409
>PTZ00494 tuzin-like protein; Provisional
Probab=94.35 E-value=0.48 Score=51.14 Aligned_cols=164 Identities=15% Similarity=0.099 Sum_probs=98.7
Q ss_pred CCCcccchHHHHHHHHHHhhc---CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHH
Q 002700 154 IEPTVVGLQLQLEQVWRCLEE---ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIG 230 (890)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 230 (890)
..+.+|.|+++-..+.+.|.+ ..++++.+.|.-|.||++|.+....+. . -..++|.+... ++-++.+.
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~---EDtLrsVV 439 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGT---EDTLRSVV 439 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCC---cchHHHHH
Confidence 346789999887777777754 478999999999999999999887764 1 34667777655 44577889
Q ss_pred HHhCCCccccccccHHHHHHHHH---HHhccCcEEEEEeccCCccccccc---ccCCCCCCCCCcEEEEecCChhHhh--
Q 002700 231 EKIGLLNDTWKNRRIEQKAQDIF---RILKEKKFVLLLDDLWQRVDLTKV---GVPLPGPQNNASKVVFTTRSEEVCG-- 302 (890)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~l~---~~l~~kr~LlVlDdv~~~~~~~~l---~~~l~~~~~~gs~IiiTtR~~~v~~-- 302 (890)
+.++.+.-+.-..-.+-..+..+ ....++.-+||+-== +-.++..+ ...|. ....-|.|++----+.+..
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~vaLa-cDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEVVSLV-SDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHHHHHH-ccchhheeeeechHhhhchhh
Confidence 99988754322222222223222 234566667776321 11111111 01111 2233456665443333311
Q ss_pred -cccCCCcEeccCCChHHHHHHHHHHh
Q 002700 303 -LMDAQKKFKVACLSDIDAWELFRQKV 328 (890)
Q Consensus 303 -~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (890)
....-..|.++.++.++|.++-.+..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 11223568999999999999887654
No 410
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.15 Score=60.60 Aligned_cols=101 Identities=16% Similarity=0.244 Sum_probs=66.4
Q ss_pred CcccchHHHHHHHHHHhhcC--------CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEE--------SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQE 227 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~--------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 227 (890)
..++|-++.+..|.+.+... ......+.|+.|+|||-||++++... .+..+..+-++.|....
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~~e------ 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEFQE------ 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhhhh------
Confidence 45788888888888887541 35678899999999999999999887 56666666665554322
Q ss_pred HHHHHhCCCccccccccHHHHHHHHHHHhccCcE-EEEEeccCC
Q 002700 228 TIGEKIGLLNDTWKNRRIEQKAQDIFRILKEKKF-VLLLDDLWQ 270 (890)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~ 270 (890)
+.+.++.+.. +...+ ....+.+.++.++| +|.||||..
T Consensus 633 -vskligsp~g-yvG~e---~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 633 -VSKLIGSPPG-YVGKE---EGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred -hhhccCCCcc-cccch---hHHHHHHHHhcCCceEEEEechhh
Confidence 3333333221 12222 22356667777776 555799964
No 411
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.32 E-value=0.14 Score=52.16 Aligned_cols=79 Identities=14% Similarity=0.060 Sum_probs=43.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc--CHHHHHHHHHHH--hCCCccc--cccccHHHHHHHH
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDL--RLENIQETIGEK--IGLLNDT--WKNRRIEQKAQDI 252 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~--l~~~~~~--~~~~~~~~~~~~l 252 (890)
+|+|.|.+|+||||+|+++.+.. .. .-..+..++..... +-...-..+... .+..-+. ....+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~--~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AR--EGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-Hh--cCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999998876 21 11223344332222 222222222222 1112122 3455667777777
Q ss_pred HHHhccCc
Q 002700 253 FRILKEKK 260 (890)
Q Consensus 253 ~~~l~~kr 260 (890)
+.+.+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 77766543
No 412
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.32 E-value=3.4 Score=44.86 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=38.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC--HHHHHHHHHHHhCCCc
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLR--LENIQETIGEKIGLLN 237 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~ 237 (890)
.+.||-.+|.-|.||||-|-.+++.+. .+-..+.-|. .+.+. .-+-++.++++.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk---k~~~kvllVa-aD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK---KKGKKVLLVA-ADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH---HcCCceEEEe-cccCChHHHHHHHHHHHHcCCce
Confidence 467999999999999999999999882 2222233333 23333 3455677888877543
No 413
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.31 E-value=0.24 Score=51.42 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=31.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK 218 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 218 (890)
...++.|.|.+|+|||++|.+++.... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 457999999999999999999877642 2245678887754
No 414
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.31 E-value=0.14 Score=56.45 Aligned_cols=93 Identities=26% Similarity=0.364 Sum_probs=58.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccC-HHHHHHHHHHHhCCCccc----cccccH----
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLR-LENIQETIGEKIGLLNDT----WKNRRI---- 245 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~---- 245 (890)
.+..-++|.|.+|+|||+|+.++.... . +.+-+.++++-+++... ..++...+...-...... ..+.+.
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 355689999999999999999998875 2 23346788888776543 455555555432211100 011111
Q ss_pred --HHHHHHHHHHhc---cCcEEEEEeccC
Q 002700 246 --EQKAQDIFRILK---EKKFVLLLDDLW 269 (890)
Q Consensus 246 --~~~~~~l~~~l~---~kr~LlVlDdv~ 269 (890)
...+..+.++++ ++.+|+++||+-
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChH
Confidence 122334566664 589999999983
No 415
>PF13245 AAA_19: Part of AAA domain
Probab=94.31 E-value=0.1 Score=42.36 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=19.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+.+++.|.|.+|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45688899999999995555544443
No 416
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.30 E-value=0.11 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=19.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+.|.|.|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999887
No 417
>PRK05973 replicative DNA helicase; Provisional
Probab=94.29 E-value=0.26 Score=49.80 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=33.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETI 229 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 229 (890)
...++.|.|.+|+|||++|.++..... ..-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHH
Confidence 456899999999999999999887752 22345666665443 34444443
No 418
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.28 E-value=0.032 Score=54.28 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 419
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.28 E-value=0.43 Score=50.88 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+..+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 420
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.26 E-value=0.18 Score=55.84 Aligned_cols=93 Identities=18% Similarity=0.304 Sum_probs=57.2
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHHhCCCccc----cccccH----
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDL-RLENIQETIGEKIGLLNDT----WKNRRI---- 245 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~---- 245 (890)
....-++|.|.+|+|||||+.++.... .. ++-+.++++-+++.. ...++...+...-...... ..+...
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~-~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNI-AK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-Hh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 455789999999999999999987775 21 222456777776554 3556666665532221100 011111
Q ss_pred --HHHHHHHHHHh---ccCcEEEEEeccC
Q 002700 246 --EQKAQDIFRIL---KEKKFVLLLDDLW 269 (890)
Q Consensus 246 --~~~~~~l~~~l---~~kr~LlVlDdv~ 269 (890)
...+..+.+++ +++.+|+++||+-
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 12233456666 5699999999983
No 421
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.23 E-value=0.032 Score=55.49 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+|+|.|.+|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 422
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.22 E-value=0.19 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+|.++|.+|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998776
No 423
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.22 E-value=0.13 Score=60.68 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=23.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+....|+|+|..|+|||||++.+..-.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355799999999999999999997665
No 424
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.22 E-value=0.058 Score=54.20 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=37.1
Q ss_pred HHHHHHHhhc--CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHH
Q 002700 165 LEQVWRCLEE--ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENI 225 (890)
Q Consensus 165 ~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 225 (890)
..++++.+.. ++..+|+|.|.||+|||||.-.+...+. .+.+=-.++-|+-|.+++-..+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCCCCcc
Confidence 4455555543 4678999999999999999999988873 2333345666666666654443
No 425
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.18 E-value=0.12 Score=60.08 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+....++|+|..|.|||||++.+..-.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999998765
No 426
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.17 E-value=0.11 Score=51.73 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNK 200 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~ 200 (890)
...+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999876
No 427
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.12 E-value=0.067 Score=57.35 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=40.6
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+.+||-++.+..+...+.+.+.+-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999888888887778899999999999999997765
No 428
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.12 E-value=0.27 Score=56.08 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=56.6
Q ss_pred HHHHHHHhhcC--CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCcccc--
Q 002700 165 LEQVWRCLEEE--SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTW-- 240 (890)
Q Consensus 165 ~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-- 240 (890)
+..+-+.|..+ ...++.|.|.+|+|||||+.++..... ..-..+++++..+ +..++...+ +.++......
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~ 322 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQ 322 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhh
Confidence 34455555442 567999999999999999999988762 2335566665443 344544443 4554322110
Q ss_pred -----------ccccHHHHHHHHHHHhcc-CcEEEEEecc
Q 002700 241 -----------KNRRIEQKAQDIFRILKE-KKFVLLLDDL 268 (890)
Q Consensus 241 -----------~~~~~~~~~~~l~~~l~~-kr~LlVlDdv 268 (890)
.....++....+.+.+.. +.-.+|+|.+
T Consensus 323 ~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 323 QGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 111234455555555533 4446666665
No 429
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.11 E-value=0.045 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...|.++|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999886
No 430
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.11 E-value=0.06 Score=53.24 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+++|+|.+|+|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45699999999999999999997754
No 431
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.09 E-value=0.16 Score=54.16 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002700 180 VGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 180 v~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+++.|++|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999876
No 432
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.09 E-value=0.23 Score=49.65 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+...|.++||+|.||||..+.++...
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 45688899999999999999999887
No 433
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.08 E-value=0.064 Score=57.36 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=37.6
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4689999999888765554555669999999999999999997664
No 434
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.07 E-value=0.21 Score=55.03 Aligned_cols=94 Identities=12% Similarity=0.155 Sum_probs=57.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCC--CCCC---------eEEEEEeCCccCHHHHHHHHHHHhC-CCccc---
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRP--TNFS---------CVIWVVVSKDLRLENIQETIGEKIG-LLNDT--- 239 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~--- 239 (890)
....-++|.|-+|+|||||+.++.+.. ... ...| .++++-+++.....+.+.+.+..-+ +....
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ 217 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFL 217 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEE
Confidence 355689999999999999999998875 210 0012 5666777777666665555555544 21100
Q ss_pred -cccccH------HHHHHHHHHHhc---cCcEEEEEeccC
Q 002700 240 -WKNRRI------EQKAQDIFRILK---EKKFVLLLDDLW 269 (890)
Q Consensus 240 -~~~~~~------~~~~~~l~~~l~---~kr~LlVlDdv~ 269 (890)
..+... .-.+..+.++++ ++.+|+++||+-
T Consensus 218 atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 218 NLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred ECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 011111 112234566665 599999999983
No 435
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.02 E-value=0.044 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.+++|.|++|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 436
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.99 E-value=0.075 Score=51.99 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=30.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVV 216 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 216 (890)
.+++.|+|+.|+|||||++++.... ...|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999987 567765555543
No 437
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.98 E-value=0.042 Score=55.12 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNK 200 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~ 200 (890)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 489999999999999999998743
No 438
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.97 E-value=0.27 Score=47.54 Aligned_cols=118 Identities=22% Similarity=0.200 Sum_probs=62.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC---ccCHHHHHHHHHHHh-----CCCccccc--c---
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK---DLRLENIQETIGEKI-----GLLNDTWK--N--- 242 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l-----~~~~~~~~--~--- 242 (890)
....|-|+|..|-||||.|..+.-+. ..+--.+..+-.-+ .......+..+- .+ +... .+. .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra---~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~-~~~~~~~~e 95 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA---VGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGF-TWETQDRER 95 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCC-cccCCCcHH
Confidence 34689999999999999999988775 22222333333211 223333333210 01 1000 001 1
Q ss_pred --ccHHHHHHHHHHHhcc-CcEEEEEeccCCc-----ccccccccCCCCCCCCCcEEEEecCChh
Q 002700 243 --RRIEQKAQDIFRILKE-KKFVLLLDDLWQR-----VDLTKVGVPLPGPQNNASKVVFTTRSEE 299 (890)
Q Consensus 243 --~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~~gs~IiiTtR~~~ 299 (890)
....+.....++.+.. +-=|+|||.+-.. .+.+.+...+. ....+.-||+|-|+..
T Consensus 96 ~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~-~rp~~~evVlTGR~~p 159 (191)
T PRK05986 96 DIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALN-ARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHH-cCCCCCEEEEECCCCC
Confidence 1111223344455544 4459999998422 23344444443 3445678999999763
No 439
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.97 E-value=0.22 Score=55.18 Aligned_cols=91 Identities=22% Similarity=0.271 Sum_probs=52.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc----ccccc-H----
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT----WKNRR-I---- 245 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~~-~---- 245 (890)
.....++|.|..|+|||||++.++... . . -..+++..-.+.....++...+...-+..... ..+.. .
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~--~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-Q--C-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-C--C-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 456789999999999999999998764 1 1 12344443334444555555554442221110 01111 1
Q ss_pred -HHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 246 -EQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 246 -~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
......+.+++ +++.+|+++||+-
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 11223345555 5789999999983
No 440
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.96 E-value=0.1 Score=51.29 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=30.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE 223 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (890)
.|+|+|-||+||||+|..+...... .+-..++-|++..++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~--~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS--KGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh--cCCceEEEEeCCCCCChH
Confidence 6899999999999999997666622 222345566666666543
No 441
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.90 E-value=0.11 Score=62.18 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=43.6
Q ss_pred CcccchHHHHHHHHHHhhc--CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 002700 156 PTVVGLQLQLEQVWRCLEE--ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK 218 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 218 (890)
..++|+...+..+.+.+.. ....-|.|+|..|+|||++|+.+++.- . ..-...+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s-~--r~~~~~v~i~c~~ 437 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS-G--RNNRRMVKMNCAA 437 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc-C--CCCCCeEEEeccc
Confidence 3589999888888777653 345689999999999999999998864 2 1223455555553
No 442
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.86 E-value=0.19 Score=45.72 Aligned_cols=58 Identities=19% Similarity=0.393 Sum_probs=22.1
Q ss_pred CCCCCceEEEecccccccccchhhccCCcceEEEcCCCCccccCh-hccCccCCCEEEccC
Q 002700 535 PTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPV-GIAQLVSLQHLDLSE 594 (890)
Q Consensus 535 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~ 594 (890)
..+++|+.+.+..+ +..++...|..++.|+.+.+.+ .+..++. .+..+.+|+.+++..
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 34444555554442 4444444445554455555543 3333322 223344555555443
No 443
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.86 E-value=0.24 Score=54.62 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=52.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc----cccc------c
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT----WKNR------R 244 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~------~ 244 (890)
.....++|+|..|+|||||++.++... +. ...++...-.+.....+.....+..-+..... ..+. .
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~---~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNA---KA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC---CC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 355688999999999999999998875 11 22333332223355566656555443321100 0011 1
Q ss_pred HHHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 245 IEQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 245 ~~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
....+..+.+++ +++.+|+++||+-
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchH
Confidence 122233444555 4799999999984
No 444
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.85 E-value=0.17 Score=50.04 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+++|.|..|.|||||.+.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998753
No 445
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.84 E-value=0.079 Score=57.49 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=61.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFRI 255 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (890)
....|.|.|+.|+||||+.+.+.+.. .......++. +.++.... ... ...+-...+ ...+.......++..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~~--~~~-~~~~i~q~e--vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEYV--HRN-KRSLINQRE--VGLDTLSFANALRAA 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhhh--ccC-ccceEEccc--cCCCCcCHHHHHHHh
Confidence 45789999999999999999988765 2333444443 22221110 000 000000000 011122345567778
Q ss_pred hccCcEEEEEeccCCcccccccccCCCCCCCCCcEEEEecCChhH
Q 002700 256 LKEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEV 300 (890)
Q Consensus 256 l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IiiTtR~~~v 300 (890)
|+..+=.|++|.+.+.+.+...... ...|-.|+.|+-...+
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~a----a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTA----AETGHLVFGTLHTNSA 232 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHH----HHcCCcEEEEEcCCCH
Confidence 8889999999999776655442222 1234456666655443
No 446
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.83 E-value=0.051 Score=52.74 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 447
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.82 E-value=0.23 Score=55.34 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=53.8
Q ss_pred CCeeEEEEEcCCCChHHHHH-HHHHhhhccCCCCCCe-EEEEEeCCcc-CHHHHHHHHHHHhCCCccc----ccccc-HH
Q 002700 175 ESVGIVGLYGMGGVGKTTLL-THINNKFLQRPTNFSC-VIWVVVSKDL-RLENIQETIGEKIGLLNDT----WKNRR-IE 246 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~-~~ 246 (890)
++..-++|.|..|+|||||| .++.+.. .-+. ++++-+++.. ...++...+.+.-...... ..+.. ..
T Consensus 160 grGQR~~Ifg~~g~GKT~Lal~~I~~q~-----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~ 234 (497)
T TIGR03324 160 GRGQRELILGDRQTGKTAIAIDTILNQK-----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGL 234 (497)
T ss_pred ccCCEEEeecCCCCCHHHHHHHHHHHhc-----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHH
Confidence 35568999999999999997 4677653 2243 6777777654 4556666555542221100 01111 11
Q ss_pred H-----HHHHHHHHh--ccCcEEEEEeccC
Q 002700 247 Q-----KAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 247 ~-----~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
+ ....+.+++ +++.+|+|+||+-
T Consensus 235 r~~ap~~a~aiAEyfrd~G~~VLlv~DdlT 264 (497)
T TIGR03324 235 QYIAPYAATSIGEHFMEQGRDVLIVYDDLT 264 (497)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcChh
Confidence 1 122345555 5799999999984
No 448
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.82 E-value=0.052 Score=52.16 Aligned_cols=42 Identities=24% Similarity=0.155 Sum_probs=32.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCC-CCCCeEEEEEeCCccC
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRP-TNFSCVIWVVVSKDLR 221 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~ 221 (890)
..++.+.|+.|+|||.+|+++.+.. . ......+-++.+....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 4678899999999999999999987 3 4455666666655444
No 449
>PRK13947 shikimate kinase; Provisional
Probab=93.81 E-value=0.052 Score=52.49 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 450
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.80 E-value=0.19 Score=52.34 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=38.3
Q ss_pred CCcccchHHHHHH---HHHHhhcC--CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 155 EPTVVGLQLQLEQ---VWRCLEEE--SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 155 ~~~~vGr~~~~~~---l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..-+||..+..+. |++++.++ ..+.|.|+|++|.|||+||-.+.+..
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh
Confidence 4568998766544 67777665 46799999999999999999999987
No 451
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.80 E-value=0.046 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+|.|.|.+|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 452
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.79 E-value=0.045 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 453
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.78 E-value=0.63 Score=50.17 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=48.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD-LRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR 254 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (890)
..++|.++|+.|+||||-...++.++ .....=..+..|+.... ....+-++..++-++++-. ...+..++...+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH
Confidence 47899999999999997655555555 21122245666665432 2334555666666776543 22344444433332
Q ss_pred HhccCcEEEEEecc
Q 002700 255 ILKEKKFVLLLDDL 268 (890)
Q Consensus 255 ~l~~kr~LlVlDdv 268 (890)
+++. =+|.+|=+
T Consensus 279 -l~~~-d~ILVDTa 290 (407)
T COG1419 279 -LRDC-DVILVDTA 290 (407)
T ss_pred -hhcC-CEEEEeCC
Confidence 2333 34445655
No 454
>PRK06851 hypothetical protein; Provisional
Probab=93.77 E-value=1.4 Score=47.69 Aligned_cols=56 Identities=21% Similarity=0.159 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeC
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVS 217 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 217 (890)
...-|.-.-.+.+. ++--+++.|.|.+|+||||+++.++... . ...++..++-|.+
T Consensus 197 ~Tp~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a-~-~~G~~v~~~hC~~ 252 (367)
T PRK06851 197 ITPKGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAA-E-ERGFDVEVYHCGF 252 (367)
T ss_pred cCCCcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHH-H-hCCCeEEEEeCCC
Confidence 33456555455554 3556789999999999999999999987 2 3445555544433
No 455
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.76 E-value=0.28 Score=54.15 Aligned_cols=93 Identities=17% Similarity=0.287 Sum_probs=57.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHHhCCCccc----cccccHH---
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDL-RLENIQETIGEKIGLLNDT----WKNRRIE--- 246 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~--- 246 (890)
.+...++|.|.+|+|||||+.++.... . .++-..++++-+++.. ...+++..+...-.....- ..+.+..
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~-~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNI-A-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHH-H-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 455789999999999999999988775 2 2223467777776554 4556666665432211100 0111111
Q ss_pred ---HHHHHHHHHh---ccCcEEEEEeccC
Q 002700 247 ---QKAQDIFRIL---KEKKFVLLLDDLW 269 (890)
Q Consensus 247 ---~~~~~l~~~l---~~kr~LlVlDdv~ 269 (890)
..+..+.+++ +++.+|+++||+-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 1233456666 4589999999983
No 456
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.75 E-value=0.085 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998775
No 457
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.75 E-value=0.048 Score=50.87 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 002700 179 IVGLYGMGGVGKTTLLTHIN 198 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~ 198 (890)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 458
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.75 E-value=0.063 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45699999999999999999999887
No 459
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.74 E-value=0.35 Score=48.40 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+++|.|..|.|||||++.+..-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45699999999999999999997654
No 460
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.74 E-value=0.11 Score=59.72 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=38.0
Q ss_pred cccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhh
Q 002700 157 TVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNK 200 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 200 (890)
.++|.+..++.+...+......-|.|+|.+|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999988776665667789999999999999999875
No 461
>PRK13949 shikimate kinase; Provisional
Probab=93.70 E-value=0.053 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
-|.|+|++|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 462
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.70 E-value=0.1 Score=48.86 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=25.4
Q ss_pred cCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 174 EESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 174 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..+..||-+.|.+|.||||+|.+++...
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 3566799999999999999999999987
No 463
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.69 E-value=0.26 Score=54.50 Aligned_cols=90 Identities=21% Similarity=0.254 Sum_probs=51.2
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHHhCCCccc-----ccccc----
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD-LRLENIQETIGEKIGLLNDT-----WKNRR---- 244 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~-----~~~~~---- 244 (890)
.....++|+|..|+|||||++.+.... ..+.++...++.. .+...+...+...-+..... .....
T Consensus 166 ~~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~ 240 (451)
T PRK05688 166 GRGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRL 240 (451)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHH
Confidence 345689999999999999999987653 1234444444433 23445555554433221100 00111
Q ss_pred -HHHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 245 -IEQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 245 -~~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
....+..+.+++ +++.+|+++||+-
T Consensus 241 ~a~~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 241 RAAMYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecchh
Confidence 111223355555 5799999999984
No 464
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.68 E-value=0.13 Score=52.57 Aligned_cols=36 Identities=33% Similarity=0.395 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 164 QLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 164 ~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..+.+...+.... +..|+|++|.||||++..+....
T Consensus 6 Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 3444544443332 78999999999998777766664
No 465
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.67 E-value=0.04 Score=65.94 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=56.7
Q ss_pred cCcEEEEEeccCCccc---ccc----cccCCCCCCCCCcEEEEecCChhHhhcccCCCcEeccCCChH-HHHHHHHHHhc
Q 002700 258 EKKFVLLLDDLWQRVD---LTK----VGVPLPGPQNNASKVVFTTRSEEVCGLMDAQKKFKVACLSDI-DAWELFRQKVG 329 (890)
Q Consensus 258 ~kr~LlVlDdv~~~~~---~~~----l~~~l~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~ 329 (890)
..+-|+++|..-...+ -.. +...+. ..|+.+|+||....+.........+.-..+..+ +... |.-+..
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~---~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Ykl~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL---KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYKLL 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH---hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEEEC
Confidence 4789999999864322 222 222222 357899999999877433211111111111111 1000 000000
Q ss_pred CcccCCChhHHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 002700 330 EEALHSHPAILELAHTVAKECGGLPLALITVGRAMACKKTPEEWRYAIQVLRT 382 (890)
Q Consensus 330 ~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~~l~~ 382 (890)
. ..+. ...|-.|++++ |+|-.|..-|..+.. ........++..+..
T Consensus 477 ~-G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 477 K-GIPG----ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred C-CCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 0 0011 23577777776 788888777776654 334455555555544
No 466
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.65 E-value=0.1 Score=55.08 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=41.1
Q ss_pred CcccchHHHHHHHHHHhhc------CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 156 PTVVGLQLQLEQVWRCLEE------ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..|+|.++.++++++.+.. .+-+++.++|+.|.||||||..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999864 367899999999999999999998876
No 467
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.64 E-value=0.4 Score=52.83 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=46.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC-ccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK-DLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR 254 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (890)
...+++++|..|+||||++..+.... ......+.+..+.... .....+-+...++.++.+.. ...+..+....+ .
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~~al-~ 265 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQLML-H 265 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cCCCHHHHHHHH-H
Confidence 34799999999999999999887754 1112223344444322 12233334555556665432 122333333222 2
Q ss_pred HhccCcEEEEEecc
Q 002700 255 ILKEKKFVLLLDDL 268 (890)
Q Consensus 255 ~l~~kr~LlVlDdv 268 (890)
.++++ -++++|-.
T Consensus 266 ~l~~~-d~VLIDTa 278 (420)
T PRK14721 266 ELRGK-HMVLIDTV 278 (420)
T ss_pred HhcCC-CEEEecCC
Confidence 34433 34566665
No 468
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.62 E-value=0.36 Score=49.48 Aligned_cols=104 Identities=12% Similarity=0.156 Sum_probs=67.2
Q ss_pred CCcccchHHHHHHHHHHhhc--CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHH
Q 002700 155 EPTVVGLQLQLEQVWRCLEE--ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEK 232 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 232 (890)
.+.|+|-... .++...+.. ...+.+.++|+.|+|||+-++.+++.. ...+-+..+..+....+...+...
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIICAA 142 (297)
T ss_pred cccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHHHH
Confidence 3456665432 233333322 233489999999999999999998875 223334556666666666666555
Q ss_pred hCCCccccccccHHHHHHHHHHHhccCcEEEEEeccCC
Q 002700 233 IGLLNDTWKNRRIEQKAQDIFRILKEKKFVLLLDDLWQ 270 (890)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 270 (890)
.... ...........+...+++..-++++|+...
T Consensus 143 ~~~~----~~~~~~d~~~~~~~~l~~~~~~iivDEA~~ 176 (297)
T COG2842 143 AFGA----TDGTINDLTERLMIRLRDTVRLIIVDEADR 176 (297)
T ss_pred Hhcc----cchhHHHHHHHHHHHHccCcceeeeehhhc
Confidence 4433 234455666777777788999999998753
No 469
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.58 E-value=0.095 Score=52.02 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
....+|+|+|.+|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998876
No 470
>PRK14530 adenylate kinase; Provisional
Probab=93.57 E-value=0.059 Score=54.34 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998876
No 471
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.3 Score=49.44 Aligned_cols=90 Identities=21% Similarity=0.311 Sum_probs=56.9
Q ss_pred CcccchHHHHHHHHHHhhc---------C---CeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHH
Q 002700 156 PTVVGLQLQLEQVWRCLEE---------E---SVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLE 223 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~---------~---~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (890)
+++.|.+..++.+.+...= + .-+-|.++|++|.||+.||++|+-.. ...| .+||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTF-----FSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTF-----FSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCce-----EEeehH----
Confidence 4578888888888776521 1 24678999999999999999999876 2222 233322
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHh-ccCcEEEEEeccC
Q 002700 224 NIQETIGEKIGLLNDTWKNRRIEQKAQDIFRIL-KEKKFVLLLDDLW 269 (890)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~ 269 (890)
++ ...- .. ..+.++..+.+.- .+|+.+|.+|.|+
T Consensus 201 DL----vSKW-------mG-ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 DL----VSKW-------MG-ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred HH----HHHH-------hc-cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 11 1111 11 1233444444444 4689999999985
No 472
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.56 E-value=0.067 Score=49.46 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=27.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK 218 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 218 (890)
++|.|+|..|+|||||++.+.+... ...+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999983 23445555555544
No 473
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.55 E-value=0.089 Score=54.80 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD 219 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 219 (890)
+..+++.|+|.+|+|||++|.++.... ...+..++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC
Confidence 356899999999999999999998887 345888999987654
No 474
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.53 E-value=0.18 Score=49.40 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.+.|.|+|++|+|||||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998875
No 475
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.53 E-value=1.1 Score=46.75 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCe-eEEEEEcCCCChHHHHHHHHHhhh
Q 002700 165 LEQVWRCLEEESV-GIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 165 ~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
-+++...+..+++ .-..++|+.|+||+++|..++...
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 4566666766654 467799999999999999988776
No 476
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.26 Score=46.79 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...+.|.|..|+|||||.+.++--.
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHccc
Confidence 4578999999999999999998765
No 477
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.52 E-value=0.026 Score=56.11 Aligned_cols=87 Identities=23% Similarity=0.244 Sum_probs=65.8
Q ss_pred ccCCcceEEEcCCCCcc-----ccChhccCccCCCEEEccCCC---CC-ccch-------hhhcCCCCcEEecCcccccc
Q 002700 559 QFMPSLKVLNLSHAELT-----ELPVGIAQLVSLQHLDLSESD---IS-ELPE-------ELKALVNLKCLNLEWTRYLI 622 (890)
Q Consensus 559 ~~l~~Lr~L~l~~~~l~-----~lp~~i~~l~~L~~L~L~~~~---l~-~lp~-------~~~~l~~L~~L~l~~~~~l~ 622 (890)
..|..+..++||+|.+. .+...|.+-.+|+..+++.-. .+ ++|+ .+-++++|+..+|+.|.+-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 44788999999999775 355567777899999998732 22 4444 35678999999999998766
Q ss_pred ccchh---hhcCCcccccccccCccc
Q 002700 623 TIPRQ---LVSNLSRLHVLRMFGASN 645 (890)
Q Consensus 623 ~lp~~---~i~~l~~L~~L~l~~~~~ 645 (890)
..|+. .|++-+.|.+|.+.+|+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCC
Confidence 66653 467788999999988764
No 478
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.51 E-value=0.36 Score=53.66 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=49.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccc----ccccc------
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDT----WKNRR------ 244 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~~------ 244 (890)
.....++|+|..|+|||||++.+.... . .-..++++.--+..+..++....+..-+..... ..+..
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~-~---~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT-S---ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc-C---CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 466799999999999999999888764 2 122444443333333444333221111000000 00111
Q ss_pred HHHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 245 IEQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 245 ~~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
....+..+.+++ +++.+|+++||+-
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChH
Confidence 112223355555 5799999999983
No 479
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.1 Score=51.20 Aligned_cols=45 Identities=31% Similarity=0.421 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHHhhc-------------CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 157 TVVGLQLQLEQVWRCLEE-------------ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
++=|.|-.+++|.+...- +..+-|.++|++|.|||-||++|+++.
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 356778777777776531 356788999999999999999999986
No 480
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.49 E-value=0.25 Score=54.94 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=55.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCC--eEEEEEeCCcc-CHHHHHHHHHHHhCCCccc----cccccH--
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFS--CVIWVVVSKDL-RLENIQETIGEKIGLLNDT----WKNRRI-- 245 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~-- 245 (890)
....-++|.|..|+|||||+.++.+.. .....+. .++++-+++.. ...++...+...-.....- ..+...
T Consensus 139 g~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~ 217 (458)
T TIGR01041 139 VRGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVE 217 (458)
T ss_pred ccCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHH
Confidence 345689999999999999999998875 2211111 45566665543 4455655555432221100 011111
Q ss_pred ----HHHHHHHHHHhc---cCcEEEEEeccC
Q 002700 246 ----EQKAQDIFRILK---EKKFVLLLDDLW 269 (890)
Q Consensus 246 ----~~~~~~l~~~l~---~kr~LlVlDdv~ 269 (890)
.-.+..+.++++ ++++|+++||+-
T Consensus 218 R~~a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 218 RIVTPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 112234566665 688999999983
No 481
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.49 E-value=0.07 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
..+|.|.|.+|+||||+|+.+..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 482
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.49 E-value=0.084 Score=52.81 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=27.6
Q ss_pred HHhhcCCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 170 RCLEEESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 170 ~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
+.+..+++++|+++|..|+|||||..++.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455789999999999999999999998875
No 483
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.45 E-value=0.063 Score=51.40 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002700 180 VGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 180 v~I~G~gGiGKTtLa~~v~~~~ 201 (890)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999999887
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.38 E-value=0.062 Score=52.46 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002700 178 GIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 178 ~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
++|+|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998864
No 485
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.34 E-value=0.29 Score=54.04 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=48.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCC-ccCHHHHHHHHHHHhCCCc--------cc--cccc
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSK-DLRLENIQETIGEKIGLLN--------DT--WKNR 243 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--------~~--~~~~ 243 (890)
.....++|.|..|+|||||++.+.... . .+..+...+.. ..+...+....+.+-+... +. ....
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~-~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl 227 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT-Q----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRI 227 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc-C----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhH
Confidence 456789999999999999999887754 1 12322232322 2233333333333322111 00 0111
Q ss_pred cHHHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 244 RIEQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 244 ~~~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
...+.+..+.+++ +++.+|+++||+-
T Consensus 228 ~a~e~a~~iAEyfr~~g~~Vll~~Dslt 255 (434)
T PRK07196 228 KATELCHAIATYYRDKGHDVLLLVDSLT 255 (434)
T ss_pred HHHHHHHHHHHHhhhccCCEEEeecchh
Confidence 1222333344444 5799999999983
No 486
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.34 E-value=0.068 Score=49.36 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=32.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCC
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLL 236 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 236 (890)
.++|.|+|.+|+||||+.+.+-... +. +. -.+...+.-+++...++.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l--~~--~~---------ivNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL--VK--HK---------IVNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH--hh--ce---------eeeHhHHHHHHHHHhCCc
Confidence 5799999999999999998876654 11 11 113456666677766653
No 487
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.32 E-value=0.1 Score=52.36 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002700 180 VGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 180 v~I~G~gGiGKTtLa~~v~~~~ 201 (890)
|.|.|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999998765
No 488
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.32 E-value=0.29 Score=53.91 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=53.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCcc-CHHHHHHHHHHHhCCCccc----cccccHH---
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDL-RLENIQETIGEKIGLLNDT----WKNRRIE--- 246 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~--- 246 (890)
.+...++|.|..|+|||||.+.+++.. . -+.++++-+++.. ...++....+..-+..... ..+....
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~-~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA-E----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC-C----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 355689999999999999999998875 1 2566777676554 3444443433322111100 0111111
Q ss_pred ---HHHHHHHHHh--ccCcEEEEEeccC
Q 002700 247 ---QKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 247 ---~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
-.+..+.+++ +++.+|+++||+-
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1122344555 5799999999983
No 489
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.31 E-value=0.26 Score=54.32 Aligned_cols=90 Identities=23% Similarity=0.267 Sum_probs=51.1
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHHhCCCcc----cccccc-HH--
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD-LRLENIQETIGEKIGLLND----TWKNRR-IE-- 246 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~-~~-- 246 (890)
.....++|.|..|+|||||++.+.+.. +.+..+++.++.. ....+.+.+....-..... ...+.. ..
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 455789999999999999999887754 2344555555543 3344444444321111000 000111 11
Q ss_pred ---HHHHHHHHHh--ccCcEEEEEeccC
Q 002700 247 ---QKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 247 ---~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
..+..+.+++ +++++|+++||+-
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 1123345555 5789999999983
No 490
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.31 E-value=0.19 Score=54.36 Aligned_cols=64 Identities=27% Similarity=0.251 Sum_probs=47.5
Q ss_pred CcccchHHHHHHHHHHhhcCCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHH
Q 002700 156 PTVVGLQLQLEQVWRCLEEESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQE 227 (890)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 227 (890)
..++|+++.+..+...+..+ +-+.+.|.+|+|||+||+.++... . -..+++.+.......++..
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhcC
Confidence 34899888888877666554 468889999999999999999987 2 3455666666666655543
No 491
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.30 E-value=0.068 Score=50.56 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002700 180 VGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 180 v~I~G~gGiGKTtLa~~v~~~~ 201 (890)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998875
No 492
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.28 E-value=0.19 Score=59.41 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
.....++|+|..|.|||||++.+..-.
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 355789999999999999999997765
No 493
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=93.26 E-value=0.19 Score=55.71 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=50.9
Q ss_pred CCeeEEEEEcCCCChHHHHHH-HHHhhhccCCCCCCe-EEEEEeCCcc-CHHHHHHHHHHHhCCCccc----cccc-cHH
Q 002700 175 ESVGIVGLYGMGGVGKTTLLT-HINNKFLQRPTNFSC-VIWVVVSKDL-RLENIQETIGEKIGLLNDT----WKNR-RIE 246 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~-~v~~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~-~~~ 246 (890)
++..-++|.|..|+||||||. ++.+.. .-+. ++++-+++.. ...++...+.+.-.+.... ..+. ...
T Consensus 139 grGQR~~I~g~~g~GKt~Lal~~I~~q~-----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~ 213 (485)
T CHL00059 139 GRGQRELIIGDRQTGKTAVATDTILNQK-----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATL 213 (485)
T ss_pred ccCCEEEeecCCCCCHHHHHHHHHHhcc-----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHH
Confidence 455689999999999999965 455442 2243 3666676544 4555665555432211100 0011 111
Q ss_pred HH-----HHHHHHHh--ccCcEEEEEeccC
Q 002700 247 QK-----AQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 247 ~~-----~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
+. ...+.+++ +++.+|+|+||+-
T Consensus 214 r~~ap~~a~aiAEyfr~~G~~VLlv~DdlT 243 (485)
T CHL00059 214 QYLAPYTGAALAEYFMYRGRHTLIIYDDLS 243 (485)
T ss_pred HHHHHHHHhhHHHHHHHcCCCEEEEEcChh
Confidence 11 12244444 5799999999984
No 494
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.25 E-value=0.14 Score=54.33 Aligned_cols=49 Identities=29% Similarity=0.313 Sum_probs=34.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHH
Q 002700 177 VGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQET 228 (890)
Q Consensus 177 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 228 (890)
.+++.+.|-||+||||+|.+.+-... .....++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999766652 22244777776666565555443
No 495
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.22 E-value=0.32 Score=53.63 Aligned_cols=90 Identities=22% Similarity=0.260 Sum_probs=50.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-cCHHHHHHHHHHHhCCCccc----cccccH----
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKD-LRLENIQETIGEKIGLLNDT----WKNRRI---- 245 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~---- 245 (890)
.....++|.|..|+|||||++.+.+.. . .+..+...++.. ....++.......-...... ..+...
T Consensus 135 ~~Gq~~~I~G~sG~GKTtLl~~I~~~~---~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~ 209 (411)
T TIGR03496 135 GRGQRMGIFAGSGVGKSTLLGMMARYT---E--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRL 209 (411)
T ss_pred ecCcEEEEECCCCCCHHHHHHHHhcCC---C--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHH
Confidence 355689999999999999999888754 1 234444445443 23444444443332111100 011111
Q ss_pred --HHHHHHHHHHh--ccCcEEEEEeccC
Q 002700 246 --EQKAQDIFRIL--KEKKFVLLLDDLW 269 (890)
Q Consensus 246 --~~~~~~l~~~l--~~kr~LlVlDdv~ 269 (890)
...+..+.+++ +++.+|+++||+-
T Consensus 210 ~a~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 210 RAAFYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeChH
Confidence 11123344555 5799999999983
No 496
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=93.21 E-value=0.13 Score=47.48 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=28.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEE
Q 002700 179 IVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVV 215 (890)
Q Consensus 179 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 215 (890)
-+.|+|-||+||+++.+.+|.-.. ...+...+|++
T Consensus 22 K~vivGng~VGKssmiqryCkgif--TkdykktIgvd 56 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKGIF--TKDYKKTIGVD 56 (246)
T ss_pred EEEEECCCccchHHHHHHHhcccc--ccccccccchh
Confidence 567999999999999999997752 34566778875
No 497
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.21 E-value=0.099 Score=55.43 Aligned_cols=149 Identities=20% Similarity=0.300 Sum_probs=78.7
Q ss_pred ccchHHHHHHHHHHhhc-----------------CCeeEEEEEcCCCChHHHHHHHHHhhhccCCC-CC---CeEEEEE-
Q 002700 158 VVGLQLQLEQVWRCLEE-----------------ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPT-NF---SCVIWVV- 215 (890)
Q Consensus 158 ~vGr~~~~~~l~~~L~~-----------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~f---~~~~wv~- 215 (890)
..|-..+...|.+.+.. ....+++|+|.+|+||||+.+++.......-. .+ .+.+-+.
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence 45566677777777642 13458999999999999999999776511111 00 0111111
Q ss_pred ------eC----CccCHHHHHHHHHH-------------HhCCCcccc-----c-cccHHHHHHHHHHHhccCcEEEEEe
Q 002700 216 ------VS----KDLRLENIQETIGE-------------KIGLLNDTW-----K-NRRIEQKAQDIFRILKEKKFVLLLD 266 (890)
Q Consensus 216 ------~s----~~~~~~~~~~~i~~-------------~l~~~~~~~-----~-~~~~~~~~~~l~~~l~~kr~LlVlD 266 (890)
+. ..++...++.++.. ..++.+... . -.+-+.-..+|.+.++.+.-+++.|
T Consensus 453 nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 11 11222234433333 333322110 0 1111222346777788888899999
Q ss_pred ccCCccc-------ccccccCCCCCCCCCcEEEEecCChhHhhcccCCCc
Q 002700 267 DLWQRVD-------LTKVGVPLPGPQNNASKVVFTTRSEEVCGLMDAQKK 309 (890)
Q Consensus 267 dv~~~~~-------~~~l~~~l~~~~~~gs~IiiTtR~~~v~~~~~~~~~ 309 (890)
.....-| ..++... ....|+.+++.|+.+++...+..+..
T Consensus 533 EF~AhLD~~TA~rVArkisel---aRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 533 EFAAHLDELTAVRVARKISEL---AREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHH---HHHhCCeEEEEecCHHHHhccCCcee
Confidence 8642211 1111111 12357778888888888777655443
No 498
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.21 E-value=0.14 Score=50.79 Aligned_cols=91 Identities=11% Similarity=0.158 Sum_probs=45.2
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHhhhccCCCCCCeEEEEEeCCccCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002700 175 ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSCVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKAQDIFR 254 (890)
Q Consensus 175 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (890)
+.+.++.+.|.+|.||||++..+.... . ....+.++...-.....-...+...-..............+...+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~-~----~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF-G----GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT------TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc-c----CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999998875 1 34455554322111111122222221111111112233345556666
Q ss_pred HhccCcEEEEEeccCC
Q 002700 255 ILKEKKFVLLLDDLWQ 270 (890)
Q Consensus 255 ~l~~kr~LlVlDdv~~ 270 (890)
....+++=+|+|..-.
T Consensus 88 ~a~~~~~nii~E~tl~ 103 (199)
T PF06414_consen 88 YAIENRYNIIFEGTLS 103 (199)
T ss_dssp HHHHCT--EEEE--TT
T ss_pred HHHHcCCCEEEecCCC
Confidence 6667888888898754
No 499
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.20 E-value=0.079 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHH
Q 002700 176 SVGIVGLYGMGGVGKTTLLTHIN 198 (890)
Q Consensus 176 ~~~vv~I~G~gGiGKTtLa~~v~ 198 (890)
....++|.|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34689999999999999999975
No 500
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.14 E-value=0.12 Score=57.20 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=36.5
Q ss_pred CCcccchHHHHHHHHHHhhc-------C---------CeeEEEEEcCCCChHHHHHHHHHhhh
Q 002700 155 EPTVVGLQLQLEQVWRCLEE-------E---------SVGIVGLYGMGGVGKTTLLTHINNKF 201 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~-------~---------~~~vv~I~G~gGiGKTtLa~~v~~~~ 201 (890)
...++|.+..++.+...+.+ . ..+.|.++|++|+|||++|+.++...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999988887655421 0 13568999999999999999998765
Done!