Query 002700
Match_columns 890
No_of_seqs 386 out of 4115
Neff 9.8
Searched_HMMs 29240
Date Tue Mar 26 21:47:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002700.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_90-94//hhsearch_pdb/002700hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 396.2 18.8 313 155-490 127-470 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 345.3 26.4 312 153-490 121-451 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 326.5 17.6 287 155-484 127-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 1.0 1 1 298.6 25.5 306 154-488 122-449 (591)
5 3rgz_A Protein brassinosteroid 1.0 1 1 199.6 14.3 109 749-869 631-740 (768)
6 4fmz_A Internalin; leucine ric 1.0 1 1 194.0 18.1 306 511-867 39-344 (347)
7 4ecn_A Leucine-rich repeat pro 1.0 1 1 194.0 19.7 321 510-867 442-838 (876)
8 4eco_A Uncharacterized protein 1.0 1 1 192.3 17.3 324 511-867 201-598 (636)
9 4ecn_A Leucine-rich repeat pro 1.0 1 1 191.8 17.0 333 514-869 489-872 (876)
10 3rgz_A Protein brassinosteroid 1.0 1 1 190.9 14.8 229 535-785 315-550 (768)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=396.17 Aligned_cols=313 Identities=14% Similarity=0.147 Sum_probs=255.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCC---CEEEEEEECCCCCHHHHHHHHHHH--HHCCCCCCCCEEEEEEECCCC--CHHHHHH
Q ss_conf 884123489899999995029---902999993899809999999996--201489998729999939956--9888999
Q 002700 155 EPTVVGLQLQLEQVWRCLEEE---SVGIVGLYGMGGVGKTTLLTHINN--KFLQRPTNFSCVIWVVVSKDL--RLENIQE 227 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~l~~~---~~~vv~I~G~~GiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~ 227 (890)
.+..|||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +. ++..+|+.++|+++++.+ +...++.
T Consensus 127 ~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 127 QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HHHCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 7760784179999999872515789628999869999889999999984069-874669957999978987879999999
Q ss_pred HHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 99998199961-----013312999999999995048-399999166772110111457899999994999955984574
Q 002700 228 TIGEKIGLLND-----TWKNRRIEQKAQDIFRILKEK-KFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVC 301 (890)
Q Consensus 228 ~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IiiTtR~~~v~ 301 (890)
.|+.+++.... .....+...+...+++.++++ |+|||+||||+..++ .+ + ...||+||||||+..++
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~--~~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A--QELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H--HHTTCEEEEEESBGGGG
T ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CC----C--CCCCCEEEEECCCHHHH
T ss_conf 99999853755345555331469999999999976898489999799971441-54----3--26998899974977999
Q ss_pred HCCC-CCCCEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 0145-788175358996889999998826722279823999999999990996238999998750799988999999998
Q 002700 302 GLMD-AQKKFKVACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAMACKKTPEEWRYAIQVL 380 (890)
Q Consensus 302 ~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~l 380 (890)
..++ ...+|+|++|++++||+||.+.++... .+++..+++++|+++|+|+||||+++|+.++.+ + |... +.+
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l 351 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQL 351 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHH
T ss_pred HHCCCCCEEEECCCCCHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-H---HHHH-HHH
T ss_conf 97088973898999898999999998744899--855689999999999599839999999984434-4---8999-875
Q ss_pred HCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHH-----------HHCCCCCCCEECHHHHHHHHHHC--CCCCCCC-C
Q ss_conf 21234358996420234653127999830224774-----------64268999201578899999971--9877765-4
Q 002700 381 RTSSSQFAGLGNEVYPLLRFSYDNLPNDTIRSCLL-----------YCSLYPEDYCISKENLIDCWIGE--GFLTERD-R 446 (890)
Q Consensus 381 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~w~ae--g~i~~~~-~ 446 (890)
....+... .+.+..++.+||+.||+ ++|.||+ |||+||+++.|+ +.+|+|+ ||+...+ .
T Consensus 352 ~~~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~ 424 (549)
T 2a5y_B 352 NNKLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEE 424 (549)
T ss_dssp HHHHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------C
T ss_pred HHHHHCCC--HHHHHHHHHCCCCCCCH-HHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCC
T ss_conf 78761364--77789897516202267-999997526522336743235608997666----533110135500267789
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC---CCCEEEEEHHHHHHHHHHHHH
Q ss_conf 30114489999999862012346---868098803699899999821
Q 002700 447 FGEQNQGYHILGILLHVCLLEEG---GDGEVKMHDVVRDMALWIACD 490 (890)
Q Consensus 447 ~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a~~~~~~ 490 (890)
...++.++ |+++|+++||++.. ....|+|||+||++|++++.+
T Consensus 425 ~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 425 QLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp CCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred CCHHHHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 99999999-99999875883671479804999676999999999889
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=345.35 Aligned_cols=312 Identities=20% Similarity=0.235 Sum_probs=250.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHC--CCEEEEEEECCCCCHHHHHHHHHHHHHCCCCC-CCCEEEEEEECCCCC--HHHHHH
Q ss_conf 7888412348989999999502--99029999938998099999999962014899-987299999399569--888999
Q 002700 153 PIEPTVVGLQLQLEQVWRCLEE--ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPT-NFSCVIWVVVSKDLR--LENIQE 227 (890)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~l~~--~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~--~~~~~~ 227 (890)
+..+.||||++++++|.++|.. +..++|+|+||||+||||||+++|++...... .++.++|+++++..+ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 99864125799999999998613588777999918988888999998607567886278817999978857267999999
Q ss_pred HHHHHHCCCCC--CCCCCCHHHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHC
Q ss_conf 99998199961--013312999999999995048--39999916677211011145789999999499995598457401
Q 002700 228 TIGEKIGLLND--TWKNRRIEQKAQDIFRILKEK--KFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCGL 303 (890)
Q Consensus 228 ~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IiiTtR~~~v~~~ 303 (890)
.++.++..... .....+.+.+...++..+.++ |+||||||+|+..+|..+ .+|++||||||++.++..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH--------CCCCEEEEECCCHHHHHH
T ss_conf 999986553033347887778999999999735678789999567997788763--------689789999277899876
Q ss_pred -CCCCCCEECCC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf -45788175358-9968899999988267222798239999999999909962389999987507999889999999982
Q 002700 304 -MDAQKKFKVAC-LSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAMACKKTPEEWRYAIQVLR 381 (890)
Q Consensus 304 -~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~ 381 (890)
+.....+.+.+ |+++++++||...++... +...+.+++|+++|+|+||||+++|+.|+.+. ..|...++.+.
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHCCCH----HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHHHHHHHHHH
T ss_conf 3488437982588887889999998657981----34838899999984997799999999862480--57999999986
Q ss_pred CCCCCCC-----CCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 1234358-----99642023465312799983022477464268999201578899999971987776543011448999
Q 002700 382 TSSSQFA-----GLGNEVYPLLRFSYDNLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQGYHI 456 (890)
Q Consensus 382 ~~~~~~~-----~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~ 456 (890)
...+..- ...+.+..++.+||+.|++ +.|.||+||++||+++.|+...++.+|.++ .+.+..+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~ 414 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDI 414 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCCCCCEECHHHHHHHHCCC-----------HHHHHHH
T ss_conf 5044303465564467799999989986799-999999972813799751899999885898-----------8899999
Q ss_pred HHHHHHHHCCCCCC---CCEEEEEHHHHHHHHHHHHH
Q ss_conf 99998620123468---68098803699899999821
Q 002700 457 LGILLHVCLLEEGG---DGEVKMHDVVRDMALWIACD 490 (890)
Q Consensus 457 l~~L~~~~ll~~~~---~~~~~mHdlv~~~a~~~~~~ 490 (890)
+++|+++||++... ...|+||++||++++..+.+
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 9999744633896379811899668999998745067
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=326.47 Aligned_cols=287 Identities=15% Similarity=0.186 Sum_probs=228.7
Q ss_pred CCCCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCE-EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 88412348989999999502-990299999389980999999999620148999872-9999939956988899999998
Q 002700 155 EPTVVGLQLQLEQVWRCLEE-ESVGIVGLYGMGGVGKTTLLTHINNKFLQRPTNFSC-VIWVVVSKDLRLENIQETIGEK 232 (890)
Q Consensus 155 ~~~~vGr~~~~~~l~~~l~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~ 232 (890)
.+..|||+.++++|.++|.. +..++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..+++.
T Consensus 127 tk~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH-HHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 787789289999999997435897189997699966799999999714-9887489938999828999999999999999
Q ss_pred HCCCC-----C-C---CCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH
Q ss_conf 19996-----1-0---13312999999999995---04839999916677211011145789999999499995598457
Q 002700 233 IGLLN-----D-T---WKNRRIEQKAQDIFRIL---KEKKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEV 300 (890)
Q Consensus 233 l~~~~-----~-~---~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IiiTtR~~~v 300 (890)
++... . . ....+.+.....+++.+ .++|+||||||+|+...|..+. .||+||||||++.+
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~--------pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------LSCKILLTTRFKQV 277 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH--------SSCCEEEECSCSHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC--------CCEEEEEECCCHHH
T ss_conf 8622721022001346799999999999999998504788799871868189998647--------98299994437379
Q ss_pred HHCCCCCCCEECC------CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC-CHHHH
Q ss_conf 4014578817535------8996889999998826722279823999999999990996238999998750799-98899
Q 002700 301 CGLMDAQKKFKVA------CLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAMACKK-TPEEW 373 (890)
Q Consensus 301 ~~~~~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~-~~~~w 373 (890)
+..+.....+.++ +|+++|||+||.+.++.. .. ++..+ .|+|+||||.++|+.|+.+. +...|
T Consensus 278 a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~e---eL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----PQ---DLPRE---VLTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----TT---THHHH---HCCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC----HH---HHHHH---HHCCCHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9866897089946865568969999999999974998----89---99999---96989999999999984889979998
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCH-HHHHHHHCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 9999998212343589964202346531279998302-247746426899920157889999997198777654301144
Q 002700 374 RYAIQVLRTSSSQFAGLGNEVYPLLRFSYDNLPNDTI-RSCLLYCSLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQ 452 (890)
Q Consensus 374 ~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~ 452 (890)
... ..+.+..++.+||+.||+ +. |.||++||+||+++.|+.+.++.+|+++| ++.
T Consensus 348 ~~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eed 403 (1221)
T 1vt4_I 348 KHV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSD 403 (1221)
T ss_dssp HHC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHH
T ss_pred HCC-------------CHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC----------HHH
T ss_conf 669-------------861899999999984889-99999999971779999877999998766778----------899
Q ss_pred HHHHHHHHHHHHCCCCC-CCCEEEEEHHHHHHH
Q ss_conf 89999999862012346-868098803699899
Q 002700 453 GYHILGILLHVCLLEEG-GDGEVKMHDVVRDMA 484 (890)
Q Consensus 453 ~~~~l~~L~~~~ll~~~-~~~~~~mHdlv~~~a 484 (890)
+..++++|+++||++.. ....|+|||++++++
T Consensus 404 Ae~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf 999999999619889868999898609999985
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=298.64 Aligned_cols=306 Identities=20% Similarity=0.276 Sum_probs=235.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHC--CCEEEEEEECCCCCHHHHHHHHHHHHHCCC-CCCC-CEEEEEEECCCCCHHHHHHH-
Q ss_conf 888412348989999999502--990299999389980999999999620148-9998-72999993995698889999-
Q 002700 154 IEPTVVGLQLQLEQVWRCLEE--ESVGIVGLYGMGGVGKTTLLTHINNKFLQR-PTNF-SCVIWVVVSKDLRLENIQET- 228 (890)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~l~~--~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~- 228 (890)
.++.||||+.+++++.+++.. ++.++|+|+|+||+||||||.+++++. .. ..+| +.++|++++.. +...+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCH-HHHHHHCCCCEEEEECCCC-CHHHHHHHH
T ss_conf 98714052999999999986036888469997699898899999998355-6888528996599977877-668899999
Q ss_pred --HHHHHCCCC--CCCCCCCHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf --999819996--101331299999999999504--83999991667721101114578999999949999559845740
Q 002700 229 --IGEKIGLLN--DTWKNRRIEQKAQDIFRILKE--KKFVLLLDDLWQRVDLTKVGVPLPGPQNNASKVVFTTRSEEVCG 302 (890)
Q Consensus 229 --i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IiiTtR~~~v~~ 302 (890)
++..++... ......+.......+...+.+ +++|||+||+|+...+..+ ..+++||+|||+..++.
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH--------CCCCEEEEECCCCHHHH
T ss_conf 9999985035565567998899999999999706799869998589987999876--------37986999898817777
Q ss_pred CCCCCCCEEC---CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 1457881753---5899688999999882672227982399999999999099623899999875079998899999999
Q 002700 303 LMDAQKKFKV---ACLSDIDAWELFRQKVGEEALHSHPAILELAHTVAKECGGLPLALITVGRAMACKKTPEEWRYAIQV 379 (890)
Q Consensus 303 ~~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~ 379 (890)
.+. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+|+||..+|+.++.. ...|...++.
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~ 344 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQ 344 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred HCC-CCCEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC--CHHHHHHHHH
T ss_conf 348-98268615889998999999998718983----1045999999999589837999999998448--4359999999
Q ss_pred HHCCCCC-C----CCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 8212343-5----8996420234653127999830224774642689992015788999999719877765430114489
Q 002700 380 LRTSSSQ-F----AGLGNEVYPLLRFSYDNLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQGY 454 (890)
Q Consensus 380 l~~~~~~-~----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~ 454 (890)
+...... . ......+..++..||+.||+ ..+.||+++|+||+++.|+...+..+|.++ .+.+.
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~ 412 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVE 412 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHCCCCCCCCCCCHHHHHHHHCCC-----------HHHHH
T ss_conf 988689876511465437899999999986899-999999974556799850899999996658-----------89999
Q ss_pred HHHHHHHHHHCCCCC---CCCEEEEEHHHHHHHHHHH
Q ss_conf 999999862012346---8680988036998999998
Q 002700 455 HILGILLHVCLLEEG---GDGEVKMHDVVRDMALWIA 488 (890)
Q Consensus 455 ~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a~~~~ 488 (890)
.++++|++++|++.. ....|+||+++|+++....
T Consensus 413 ~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHH
T ss_conf 9999998595868854898567997689999998653
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=199.60 Aligned_cols=109 Identities=8% Similarity=-0.085 Sum_probs=53.8
Q ss_pred CCCCEEEEEECCCCCCCCC-CCCCCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 7981089774598999898-545889966885605644200001475566565457898777534784078666540156
Q 002700 749 FHGLKKVDIVKCNKLKDLT-FLAFAPNLKSIEVLGCVAMEEIVSVGKFAAVPEVTANLNPFAKLQNLKFFGVINLKSIYW 827 (890)
Q Consensus 749 ~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 827 (890)
+++|+.|+++++.....+| .++.++.|+.|++++|.....++. .+..+++|+.|+++++.-...+|.
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~------------~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD------------EVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTCCEEECCSSCCEECCCG
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH------------HHHCCCCCCEEECCCCCCCCCCCH
T ss_conf 35665797858801555877884141578784868803887896------------784777899898978802386886
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECHHHH
Q ss_conf 988899844784437978888889997555654179700642
Q 002700 828 KPLPFPNLKSMSFLHCHKLKKLPLDSNSARERNIVIRGDRKW 869 (890)
Q Consensus 828 ~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~i~~~~~~ 869 (890)
....++.|++|++++|+--..+|....-.++....+.|++.+
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHH
T ss_conf 775788789787968815560899601024897775698321
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=1.00 E-value=1 Score=194.01 Aligned_cols=306 Identities=17% Similarity=0.203 Sum_probs=214.0
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCHHCCCCCCCCEE
Q ss_conf 44585443078630443334667888997208982156322345034406995319992898765467000175677888
Q 002700 511 EVKGWANARRISLMDNQITNLSEIPTCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNLSHAELTELPVGIAQLVSLQHL 590 (890)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 590 (890)
....+++++.+.+.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+| .+..+++|++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred CCHHCCCCCEEEEECCCCCCCHHHHHCCCCCEEECCCCCCCCCHH--HHCCCCCCEEECCCCCCCCCH-HHCCCCCCCEE
T ss_conf 300103446899858864463555304886589765984456444--406886888984388656706-77078857888
Q ss_pred ECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 75689988566665259978587257554434444233128963440013575563233444220012345985229999
Q 002700 591 DLSESDISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVVEELLGLKY 670 (890)
Q Consensus 591 ~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 670 (890)
++++|.+..++. +..+++|+.|++++|.....++. +..+++|++|.+.++..... ..+..+++
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~--------------~~~~~l~~ 178 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV--------------TPIANLTD 178 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC--------------GGGGGCTT
T ss_pred ECCCCCCCCCHH-HCCCCCEEEEECCCCCCCCCCCC--HHHCCCCCEEEECCCCCCCC--------------HHHCCCCC
T ss_conf 886885667630-24687601897779987443601--23178774788168886776--------------10024787
Q ss_pred CCEEEEEECCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 86589994371668863213100013111265233798800012433543466573144677424672488743543479
Q 002700 671 LEVISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKIDYPGVVQRFVFH 750 (890)
Q Consensus 671 L~~L~i~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 750 (890)
|+.+++..+....... ....++|+.|++.++...... .+..+++|+.|++++|.... +.+ ...++
T Consensus 179 L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~-~~~-------~~~l~ 243 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKITD-LSP-------LANLS 243 (347)
T ss_dssp CSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCC-CGG-------GTTCT
T ss_pred CCEEECCCCCCCCCCC----CCCCCCCCEEECCCCCCCCCC---HHHCCCCCCEEECCCCCCCC-CCC-------HHCCC
T ss_conf 8889814985665403----167775206612247777885---34447868979855985678-722-------20188
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 81089774598999898545889966885605644200001475566565457898777534784078666540156988
Q 002700 751 GLKKVDIVKCNKLKDLTFLAFAPNLKSIEVLGCVAMEEIVSVGKFAAVPEVTANLNPFAKLQNLKFFGVINLKSIYWKPL 830 (890)
Q Consensus 751 ~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~ 830 (890)
+|+.|++.+| .+..++.+..+++|++|++++|. ++.+. ....+++|+.|.+.+|.-....+....
T Consensus 244 ~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 244 QLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS-------------VLNNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp TCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred CCCEEECCCC-CCCCCHHHHCCCCCCEEECCCCC-CCCCH-------------HHCCCCCCCEEECCCCCCCCCCHHHHH
T ss_conf 8898979887-55878567168976789802985-68885-------------455899888897769968775966762
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECHH
Q ss_conf 8998447844379788888899975556541797006
Q 002700 831 PFPNLKSMSFLHCHKLKKLPLDSNSARERNIVIRGDR 867 (890)
Q Consensus 831 ~~~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~i~~~~ 867 (890)
.+++|+.|++++|+ ++.++......+|+.+++.+|+
T Consensus 309 ~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 309 GLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp TCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred CCCCCCEEECCCCC-CCCCCCHHHHHCCCEEEHHHHC
T ss_conf 66668789754974-4566073352204511011220
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=193.96 Aligned_cols=321 Identities=13% Similarity=0.124 Sum_probs=206.8
Q ss_pred CCCCCCCCCCEEEEECCCCCC------------------CCC-CC--CCCCCEEEEECCCCCCCCCCHHHCCCCCCEEEE
Q ss_conf 644585443078630443334------------------667-88--899720898215632234503440699531999
Q 002700 510 PEVKGWANARRISLMDNQITN------------------LSE-IP--TCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLN 568 (890)
Q Consensus 510 ~~~~~~~~l~~l~l~~~~~~~------------------l~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 568 (890)
+.+..+++++.|++++|.+.. +|. +. .+++|+.|++++|.+....+..|..+++|++|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf 88756999878979688678874653223322222244587444025599977898718988752738773799989998
Q ss_pred CCCCC-CCC--CCHHCCCCC-------CCCEEECCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 28987-654--670001756-------77888756899885666--6525997858725755443444423312896344
Q 002700 569 LSHAE-LTE--LPVGIAQLV-------SLQHLDLSESDISELPE--ELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLH 636 (890)
Q Consensus 569 l~~~~-l~~--lp~~i~~l~-------~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~ 636 (890)
+++|. ++. +|..++.+. +|++|++++|.++.+|. .++++++|+.|++++|. +..+| . +..+++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSEES
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCC-CCCCH-H-HCCCCCCE
T ss_conf 968987656646177875233015568831998228947761872355158988989897998-25621-2-24798500
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-CCEEEEEECCHHHHHHHHCCCCCC---------------------
Q ss_conf 0013575563233444220012345985229999-865899943716688632131000---------------------
Q 002700 637 VLRMFGASNNVLDEASEDSVLGELVVEELLGLKY-LEVISFNLRSSRALQSFLSSHKLR--------------------- 694 (890)
Q Consensus 637 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~i~~~~~~~l~~l~~~~~~~--------------------- 694 (890)
.|++..+... .++ ..+.++++ |+.|.+..+....++ ......
T Consensus 599 ~L~Ls~N~l~---~lp----------~~l~~l~~~L~~L~Ls~N~L~~lp---~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 599 DLKLDYNQIE---EIP----------EDFCAFTDQVEGLGFSHNKLKYIP---NIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp EEECCSSCCS---CCC----------TTSCEECTTCCEEECCSSCCCSCC---SCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred EEECCCCCCC---CCH----------HHHHHCCCCCCEEECCCCCCCCCC---HHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 7987187125---035----------877525114989998499787476---445225567778897708847886432
Q ss_pred ----------CCCEEEEECCCCCCCCEEECCCCCCCCCCEEECCCCCCCCEEEECCCCCC--CCCCCCCCEEEEEECCCC
Q ss_conf ----------13111265233798800012433543466573144677424672488743--543479810897745989
Q 002700 695 ----------SCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKIDYPGVV--QRFVFHGLKKVDIVKCNK 762 (890)
Q Consensus 695 ----------~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~--~~~~~~~L~~L~L~~c~~ 762 (890)
.+|+.|+++++.... .+...+..+++|+.|++++|.. ..+........ ....+++|+.|+|++|.
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~- 739 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNK- 739 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSC-
T ss_pred CHHHHCCCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCCEEECCCCCC-CCCCHHHHCCCCCCCCCCCCCCEEECCCCC-
T ss_conf 0000001357976889831996886-5978871389889998989968-854967845553343214871589888997-
Q ss_pred CCCCC-CCC--CCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC------CCCCCCCCCCCCC
Q ss_conf 99898-545--88996688560564420000147556656545789877753478407866------6540156988899
Q 002700 763 LKDLT-FLA--FAPNLKSIEVLGCVAMEEIVSVGKFAAVPEVTANLNPFAKLQNLKFFGVI------NLKSIYWKPLPFP 833 (890)
Q Consensus 763 l~~l~-~l~--~l~~L~~L~l~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~------~L~~~~~~~~~~~ 833 (890)
+..+| .+. .+++|+.|++++|. ++.++ ..+..+++|+.|.+.+++ ....+|.....++
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNC-FSSFP------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSC-CSSCC------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CCCCHHHHHHCCCCCCCEEEECCCC-CCCCC------------HHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 8665277624427986989908997-87610------------5661599988998879977665632444868883699
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCEEEECHH
Q ss_conf 8447844379788888899975556541797006
Q 002700 834 NLKSMSFLHCHKLKKLPLDSNSARERNIVIRGDR 867 (890)
Q Consensus 834 ~L~~L~i~~C~~L~~lp~~~~~~~L~~l~i~~~~ 867 (890)
+|+.|++++| .+..+|..... +|+.+++++|+
T Consensus 807 ~L~~L~Ls~N-~L~~Ip~~l~~-~L~~LdLs~N~ 838 (876)
T 4ecn_A 807 SLIQLQIGSN-DIRKVDEKLTP-QLYILDIADNP 838 (876)
T ss_dssp SCCEEECCSS-CCCBCCSCCCS-SSCEEECCSCT
T ss_pred CCCEEECCCC-CCCCCCHHHCC-CCCEEECCCCC
T ss_conf 8788988799-78740876628-77889997998
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=192.31 Aligned_cols=324 Identities=12% Similarity=0.119 Sum_probs=168.7
Q ss_pred CCCCCCCCCEEEEECCCCCC------------------CC-CCC--CCCCCEEEEECCCCCCCCCCHHHCCCCCCEEEEC
Q ss_conf 44585443078630443334------------------66-788--8997208982156322345034406995319992
Q 002700 511 EVKGWANARRISLMDNQITN------------------LS-EIP--TCPHLLTLFLNKNKLQMIHNDFFQFMPSLKVLNL 569 (890)
Q Consensus 511 ~~~~~~~l~~l~l~~~~~~~------------------l~-~~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 569 (890)
.+..+++++.|++++|.+.. +| .+. .+++|++|++++|.+....+..|..+++|++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 77256478789886882366423221222221001024863220044687888980488577628388834999788978
Q ss_pred CCCC-CCC--CCHHCCCC------CCCCEEECCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 8987-654--67000175------677888756899885666--652599785872575544344442331289634400
Q 002700 570 SHAE-LTE--LPVGIAQL------VSLQHLDLSESDISELPE--ELKALVNLKCLNLEWTRYLITIPRQLVSNLSRLHVL 638 (890)
Q Consensus 570 ~~~~-l~~--lp~~i~~l------~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L 638 (890)
++|. ++. +|..++.+ ++|++|++++|.++.+|. .++++++|+.|++++|.....+| . +..+++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEE
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-H-HCCCCCCCEE
T ss_conf 4798876653357887543046578888898979937766765554257888989690880705166-6-4788988989
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-CCEEEEEECCHHHHHHH-----------------------HCCCC--
Q ss_conf 13575563233444220012345985229999-86589994371668863-----------------------21310--
Q 002700 639 RMFGASNNVLDEASEDSVLGELVVEELLGLKY-LEVISFNLRSSRALQSF-----------------------LSSHK-- 692 (890)
Q Consensus 639 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~i~~~~~~~l~~l-----------------------~~~~~-- 692 (890)
++.++... .++ ..+.+++. |+.+++..+....++.. .....
T Consensus 359 ~L~~N~l~---~lp----------~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 359 NLAYNQIT---EIP----------ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp ECCSSEEE---ECC----------TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred ECCCCCCC---CCC----------HHHHHHCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 89899403---033----------75651023686898529827544665533345766889774885788652442002
Q ss_pred -----CCCCCEEEEECCCCCCCCEEECCCCCCCCCCEEECCCCCCCCEEEECCCCCCC--CCCCCCCEEEEEECCCCCCC
Q ss_conf -----00131112652337988000124335434665731446774246724887435--43479810897745989998
Q 002700 693 -----LRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKIDYPGVVQ--RFVFHGLKKVDIVKCNKLKD 765 (890)
Q Consensus 693 -----~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~--~~~~~~L~~L~L~~c~~l~~ 765 (890)
...+|+.|+++++..... +...+..+++|+.|+++++... .+......... ...+++|+.|++++|. ++.
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 502 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTK 502 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCB
T ss_pred CCCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCC-CCC
T ss_conf 20112589888897727966867-8788715898898989799788-73978840440012214773389896993-881
Q ss_pred CC-CCC--CCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCC------CCCCCCCCCCCCCCCCC
Q ss_conf 98-545--8899668856056442000014755665654578987775347840786------66540156988899844
Q 002700 766 LT-FLA--FAPNLKSIEVLGCVAMEEIVSVGKFAAVPEVTANLNPFAKLQNLKFFGV------INLKSIYWKPLPFPNLK 836 (890)
Q Consensus 766 l~-~l~--~l~~L~~L~l~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~------~~L~~~~~~~~~~~~L~ 836 (890)
+| .+. .+++|++|++++|. ++.++. .+..+++|+.|.+.++ .....++.....+++|+
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNS-FSKFPT------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSC-CSSCCC------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred CCHHHHHCCCCCCCEEECCCCC-CCCCCH------------HHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 6854534458876989898998-877682------------353088878788988866566731212737785699878
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEEECHH
Q ss_conf 7844379788888899975556541797006
Q 002700 837 SMSFLHCHKLKKLPLDSNSARERNIVIRGDR 867 (890)
Q Consensus 837 ~L~i~~C~~L~~lp~~~~~~~L~~l~i~~~~ 867 (890)
.|++++| .++.+|.... .+|+.+++.+|+
T Consensus 570 ~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 570 QLQIGSN-DIRKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp EEECCSS-CCCBCCSCCC-TTCCEEECCSCT
T ss_pred EEECCCC-CCCCCCHHHH-CCCCEEECCCCC
T ss_conf 8989899-4770597683-867899876998
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=191.82 Aligned_cols=333 Identities=14% Similarity=0.145 Sum_probs=213.0
Q ss_pred CCCCCCEEEEECCCCCC-CC-CCCCCCCCEEEEECCCC-CCC--CCCHHHC-------CCCCCEEEECCCCCCCCCCH--
Q ss_conf 85443078630443334-66-78889972089821563-223--4503440-------69953199928987654670--
Q 002700 514 GWANARRISLMDNQITN-LS-EIPTCPHLLTLFLNKNK-LQM--IHNDFFQ-------FMPSLKVLNLSHAELTELPV-- 579 (890)
Q Consensus 514 ~~~~l~~l~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~-l~~--~~~~~~~-------~l~~L~~L~l~~~~l~~lp~-- 579 (890)
.+++++.|++++|.+.. +| .+..+++|+.|++++|. +.. +|.. +. .+++|++|++++|.++.+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHH-HHHHHHCCCCCCCCCEEEEECCCCCCCCCHH
T ss_conf 599977898718988752738773799989998968987656646177-8752330155688319982289477618723
Q ss_pred HCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCC---
Q ss_conf 0017567788875689988566665259978587257554434444233128963-440013575563233444220---
Q 002700 580 GIAQLVSLQHLDLSESDISELPEELKALVNLKCLNLEWTRYLITIPRQLVSNLSR-LHVLRMFGASNNVLDEASEDS--- 655 (890)
Q Consensus 580 ~i~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~--- 655 (890)
.++.+++|+.|++++|.++.+| .++.+++|+.|++++|. +..+|.. +..+++ |+.|++..+............
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred HHHCCCCCCEEECCCCCCCCCH-HHCCCCCCEEEECCCCC-CCCCHHH-HHHCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 5515898898989799825621-22479850079871871-2503587-7525114989998499787476445225567
Q ss_pred -----HHHHHHH----H----HHC--CCCCCCEEEEEECCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEECCC----
Q ss_conf -----0123459----8----522--99998658999437166886321310001311126523379880001243----
Q 002700 656 -----VLGELVV----E----ELL--GLKYLEVISFNLRSSRALQSFLSSHKLRSCIQALSLQHFKDTTFLEISAL---- 716 (890)
Q Consensus 656 -----~~~~~~~----~----~l~--~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l---- 716 (890)
......+ . .+. .+.+|+.|++..+....++.. ....+++|+.|+++++.... .+...+
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~--~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~ 721 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE--LFATGSPISTIILSNNLMTS-IPENSLKPKD 721 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH--HHHTTCCCSEEECCSCCCSC-CCTTSSSCTT
T ss_pred CCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCCHH--HHCCCCCCCEEECCCCCCCC-CCHHHHCCCC
T ss_conf 77889770884788643200000013579768898319968865978--87138988999898996885-4967845553
Q ss_pred ---CCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCC-CCCCCCCCCEEEECCCCCCCHHCCC
Q ss_conf ---354346657314467742467248874354347981089774598999898-5458899668856056442000014
Q 002700 717 ---ADLKQLNELRISECKKLEELKIDYPGVVQRFVFHGLKKVDIVKCNKLKDLT-FLAFAPNLKSIEVLGCVAMEEIVSV 792 (890)
Q Consensus 717 ---~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~ 792 (890)
..+++|+.|++++|.. ..++.... ...+++|+.|+|++|.. ..+| .+..+++|+.|++++|..+..-
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L-~~lp~~l~----~~~l~~L~~L~Ls~N~L-~~lp~~l~~L~~L~~L~Ls~N~~ls~N--- 792 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKL-TSLSDDFR----ATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGN--- 792 (876)
T ss_dssp SCCTTGGGCCEEECCSSCC-CCCCGGGS----TTTCTTCCEEECCSSCC-SSCCCGGGGCTTCCEEECCCCBCTTCC---
T ss_pred CCCCCCCCCCEEECCCCCC-CCCHHHHH----HCCCCCCCEEEECCCCC-CCCCHHHHCCCCCCEEECCCCCCCCCC---
T ss_conf 3432148715898889978-66527762----44279869899089978-761056615999889988799776656---
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC---------CCC-CCCCEE
Q ss_conf 7556656545789877753478407866654015698889984478443797888888999---------755-565417
Q 002700 793 GKFAAVPEVTANLNPFAKLQNLKFFGVINLKSIYWKPLPFPNLKSMSFLHCHKLKKLPLDS---------NSA-RERNIV 862 (890)
Q Consensus 793 ~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~---------~~~-~L~~l~ 862 (890)
.-....+..+..+++|+.|.+++|.- ..+|... +++|+.|++++|+ +..++... ..+ ......
T Consensus 793 ---~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l--~~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 793 ---RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp ---BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC--CSSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred ---CCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHH--CCCCCEEECCCCC-CCCCCHHHCCCCCCCHHEEECCCCCCC
T ss_conf ---32444868883699878898879978-7408766--2877889997998-881176772565423110346888655
Q ss_pred EECHHHH
Q ss_conf 9700642
Q 002700 863 IRGDRKW 869 (890)
Q Consensus 863 i~~~~~~ 869 (890)
|.+|+.+
T Consensus 866 I~gC~~L 872 (876)
T 4ecn_A 866 IRGCDAL 872 (876)
T ss_dssp EESCGGG
T ss_pred CCCCCCC
T ss_conf 3799875
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=190.92 Aligned_cols=229 Identities=23% Similarity=0.226 Sum_probs=85.5
Q ss_pred CCCCCCEEEEECCCCCC-CCCCHHHCCCCCCEEEECCCCCCC-CCCHHCCCCC-CCCEEECCCCCCC-CCCHHHHC--CC
Q ss_conf 88997208982156322-345034406995319992898765-4670001756-7788875689988-56666525--99
Q 002700 535 PTCPHLLTLFLNKNKLQ-MIHNDFFQFMPSLKVLNLSHAELT-ELPVGIAQLV-SLQHLDLSESDIS-ELPEELKA--LV 608 (890)
Q Consensus 535 ~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~L~~~~l~-~lp~~~~~--l~ 608 (890)
..+++|++|++++|.+. .+|...+..++.|++|++++|.+. .+|..+..+. +|++|++++|.+. .+|..+.. ++
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred HCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCC
T ss_conf 55877667789788525737978872488887884847843762309898632277199862787478767666533247
Q ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHH
Q ss_conf 78587257554434444233128963440013575563233444220012345985229999865899943716688632
Q 002700 609 NLKCLNLEWTRYLITIPRQLVSNLSRLHVLRMFGASNNVLDEASEDSVLGELVVEELLGLKYLEVISFNLRSSRALQSFL 688 (890)
Q Consensus 609 ~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~l~~l~ 688 (890)
+|+.|++++|.....+|.. +..+++|++|++..+... ......+..+++|+.+.+..+.... ...
T Consensus 395 ~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~------------~~~p~~l~~l~~L~~L~L~~n~l~~--~~p 459 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLS------------GTIPSSLGSLSKLRDLKLWLNMLEG--EIP 459 (768)
T ss_dssp CCCEEECCSSEEEEECCGG-GGGCTTCCEEECCSSEEE------------SCCCGGGGGCTTCCEEECCSSCCCS--CCC
T ss_pred CCCEEECCCCCCCCCCCHH-HHCCCCCCEEECCCCCCC------------CCCCHHHHCCCCCCEEECCCCCCCC--CCC
T ss_conf 7618989778465424877-756898798989588466------------8546777449988989897881547--189
Q ss_pred CCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCC-
Q ss_conf 1310001311126523379880001243354346657314467742467248874354347981089774598999898-
Q 002700 689 SSHKLRSCIQALSLQHFKDTTFLEISALADLKQLNELRISECKKLEELKIDYPGVVQRFVFHGLKKVDIVKCNKLKDLT- 767 (890)
Q Consensus 689 ~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~- 767 (890)
......++|+.|++.++......+ ..+..+++|+.|++++|..... .+.+.. .+++|+.|++++|.....+|
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~-~p~~~~-----~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNNRLTGE-IPKWIG-----RLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCCSC-CCGGGG-----GCTTCCEEECCSSCCEEECCG
T ss_pred HHHCCCCCCEEEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCC-CCHHHH-----CCCCCCEEECCCCCCCCCCCH
T ss_conf 788287773299901995137588-7881699899897539951896-876885-----689999898978943374887
Q ss_pred CCCCCCCCCEEEECCCCC
Q ss_conf 545889966885605644
Q 002700 768 FLAFAPNLKSIEVLGCVA 785 (890)
Q Consensus 768 ~l~~l~~L~~L~l~~c~~ 785 (890)
.+..+++|++|++++|..
T Consensus 533 ~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp GGGGCTTCCEEECCSSEE
T ss_pred HHCCCCCCCEEECCCCCC
T ss_conf 770889899898988846
Done!