Query 002701
Match_columns 890
No_of_seqs 764 out of 4374
Neff 11.0
Searched_HMMs 29240
Date Tue Mar 26 22:09:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002701.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_90-94//hhsearch_pdb/002701hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 322.5 41.5 490 187-811 82-578 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 321.2 43.1 91 155-249 85-175 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 222.8 25.0 37 232-268 34-70 (501)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 221.3 48.5 54 756-809 278-331 (388)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 221.1 48.0 361 161-531 6-366 (388)
6 2gw1_A Mitochondrial precursor 1.0 1 1 208.3 38.3 95 156-253 8-102 (514)
7 2gw1_A Mitochondrial precursor 1.0 1 1 204.3 40.7 127 684-811 343-477 (514)
8 3fp2_A TPR repeat-containing p 1.0 1 1 194.5 39.0 49 763-811 442-490 (537)
9 3fp2_A TPR repeat-containing p 1.0 1 1 192.3 38.5 91 156-248 27-117 (537)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 184.5 40.6 380 483-875 6-447 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=322.48 Aligned_cols=490 Identities=11% Similarity=0.018 Sum_probs=218.5
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 88745999999999429942899999999977999779979999999980399526999999987589998854599999
Q 002701 187 PEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILI 266 (890)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 266 (890)
+++..++.++..+.+.|++++|..+|+++... .|+..++..++.++.+.|++++|..+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCHHHHHHHH
T ss_conf 89999999999998745834799999999960--899357999999999747699999999987335--45650899999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99980499458999999997789997787699999997704994789999999998599989988999999999249978
Q 002701 267 HGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKID 346 (890)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 346 (890)
..|++.|++++|..+|+++. |+.. ...++. +.+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~-----------------------------------~~~--- 190 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETN-----PFRK----DEKNAN-----------------------------------KLL--- 190 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSC-----TTC----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHCCC-----CCCC----CCCCCC-----------------------------------CCC---
T ss_conf 99998866999999984248-----8632----232343-----------------------------------343---
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 89999998666998868998999999999059963899999999878999687779999999995499889999999998
Q 002701 347 DAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMA 426 (890)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 426 (890)
-...+.+.+..+|+.++.++.+.|++++|...|++|.+.++. +...+..+...+...+..+. ...
T Consensus 191 --------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~--~~~---- 255 (597)
T 2xpi_A 191 --------MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEW--DLV---- 255 (597)
T ss_dssp --------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHH--HHH----
T ss_pred --------CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHCCCCHHHH--HHH----
T ss_conf --------211235125899999889999839989999999999972932-56999999985034615678--999----
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 869998832099999999952992389999-9999976999788579999999871699889999999996499898988
Q 002701 427 DEGIKATIYPYNSLISGHCKLGNLSAAESF-FEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSY 505 (890)
Q Consensus 427 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 505 (890)
..+ +..+...+..+...+|+.++..+.+.|++++|..+++++.+. +++..
T Consensus 256 ---------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 306 (597)
T 2xpi_A 256 ---------------------------LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSD 306 (597)
T ss_dssp ---------------------------HHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHH
T ss_pred ---------------------------HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCHHH
T ss_conf ---------------------------8657742344308899999999999980731399999999876438--83099
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999993599999999999998779998968999999999972996799999999943999999999999999998
Q 002701 506 TFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLC 585 (890)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 585 (890)
++..++..+.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+. .+.+..++..++..+.
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
T ss_conf 99999999998468999999999999729-553799999999999827777999999999851-8354799999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 07995799999999977599878888999999999459948999999999885998899989999999982599479999
Q 002701 586 SAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFG 665 (890)
Q Consensus 586 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 665 (890)
..|++++|..+++++.+..+ .+...|..++..|.+.|++++|...|+++...+
T Consensus 385 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------------- 437 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-------------------------- 437 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------------------
T ss_pred HHCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------------------------
T ss_conf 83569999999999987297-778999999999997577799999999999868--------------------------
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--
Q ss_conf 999998779997789999999999811999999999999996899989988999999999529966999999999878--
Q 002701 666 LLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLAS-- 743 (890)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 743 (890)
+.+..++..++.+|.+.|++++|..+|+.+.+.. +.+..+|..++..+.+.|++++|..+++++.+.
T Consensus 438 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 438 ----------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp ----------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf ----------1343899999999998579999999999999848-88767999999999981899999999999998532
Q ss_pred --CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf --99988--887999999999359998999999999529998889999999999914998999999999887
Q 002701 744 --GSLPN--QITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 744 --~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
+..|+ ..++..++.+|.+.|++++|...++++++..|.+..+|..++.+|...|++++|.+.++++.+
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 345453549999999999999804799999999999973899738999999999981789999999999972
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=321.17 Aligned_cols=91 Identities=9% Similarity=-0.080 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 56999999999539933799999998858999887459999999994299428999999999779997799799999999
Q 002701 155 LGFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSL 234 (890)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (890)
..|..++..|.+.|++++|+.+|++|... .|+..++..++.++.+.|++++|...|+++... +++..+++.++.+|
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHH
T ss_conf 99999999998745834799999999960--899357999999999747699999999987335--45650899999999
Q ss_pred HCCCCHHHHHHHHHH
Q ss_conf 803995269999999
Q 002701 235 CELKDFVKAKEMIHF 249 (890)
Q Consensus 235 ~~~g~~~~A~~~~~~ 249 (890)
++.|++++|..+|++
T Consensus 161 ~~~g~~~~A~~~~~~ 175 (597)
T 2xpi_A 161 VKLYDWQGALNLLGE 175 (597)
T ss_dssp HHTTCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 988669999999842
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=222.83 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=11.5
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9998039952699999998758999885459999999
Q 002701 232 RSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHG 268 (890)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 268 (890)
.+||+.|++++|.++|++|.+.|+.||..+||.+|.+
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~ 70 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV 70 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 9998598999999999999981899878399999999
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=221.33 Aligned_cols=54 Identities=22% Similarity=0.175 Sum_probs=17.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999993599989999999995299988899999999999149989999999998
Q 002701 756 LDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGM 809 (890)
Q Consensus 756 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 809 (890)
+..+...|++++|...++++++..|.+..++..++..+...|++++|...++++
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999998699799999999998649444999999999999848999999999999
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=221.15 Aligned_cols=361 Identities=16% Similarity=0.035 Sum_probs=132.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 99999539933799999998858999887459999999994299428999999999779997799799999999803995
Q 002701 161 IQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDF 240 (890)
Q Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (890)
+..+.+.|++++|+..|..+....+. +...+..+...+...|+++.|...++.+.+.. +.+..+|..++..+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCH
T ss_conf 99998779999999999999984978-89999999999998689999999999997619-78669999999999877999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 26999999987589998854599999999804994589999999977899977876999999977049947899999999
Q 002701 241 VKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEM 320 (890)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 320 (890)
++|...|+++.+.. +.+...+..++..+.+.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999998749-6539999999999998589999999999999759-896899999999999846899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 98599989988999999999249978899999986669988689989999999990599638999999998789996877
Q 002701 321 IELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVV 400 (890)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 400 (890)
.+.. +.+..++..++..+...|++++|...|+++...+ +.+...+..+...+...|++++|...++......+. +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHH
T ss_conf 8729-8978999999999998599999999999998559-886799999999999857899999999999852968-789
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 79999999995499889999999998869998832099999999952992389999999997699978857999999987
Q 002701 401 TYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYC 480 (890)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 480 (890)
++..+...+.+.|++++|...++++.+..+. +..++..+...+.+.|++++|...++++.+..+ .+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf 9999999999868899999999999864999-889999999999986997999999999986494-44999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 169988999999999649989898889999999993599999999999998
Q 002701 481 NEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEML 531 (890)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 531 (890)
..|++++|...++++.+. .+.+..++..+...+.+.|++++|...++++.
T Consensus 317 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 848999999999999860-98739999779999998688899999999998
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=208.28 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 69999999995399337999999988589998874599999999942994289999999997799977997999999998
Q 002701 156 GFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLC 235 (890)
Q Consensus 156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (890)
.+..++..+.+.|++++|+..|.++.... |+..++..+..++.+.|+++.|...++++.+.+ +.+..++..++.++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_conf 99998789998602789999999998559--227899868899998854999999998776069-378999998889999
Q ss_pred CCCCHHHHHHHHHHHHHC
Q ss_conf 039952699999998758
Q 002701 236 ELKDFVKAKEMIHFMDSN 253 (890)
Q Consensus 236 ~~g~~~~A~~~~~~~~~~ 253 (890)
..|++++|...|+++.+.
T Consensus 85 ~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp HTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 876688899999999955
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=204.29 Aligned_cols=127 Identities=12% Similarity=-0.063 Sum_probs=49.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHH
Q ss_conf 999999811999999999999996899989988999999999529966999999999878999-88----8879999999
Q 002701 684 SMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSL-PN----QITYGCFLDY 758 (890)
Q Consensus 684 ~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~ 758 (890)
.+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... ++ ...+..++..
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999998689999999999999875-46778999999999878899999999999997612332178999999999999
Q ss_pred HHH---CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 993---59998999999999529998889999999999914998999999999887
Q 002701 759 LTR---EGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 759 ~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
+.. .|++++|...++.+++..|.+..++..++.++...|++++|...++++.+
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 86633258889999999999875855589999999999982579999999999987
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=194.48 Aligned_cols=49 Identities=18% Similarity=0.036 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9998999999999529998889999999999914998999999999887
Q 002701 763 GKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 763 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
|++++|...++++++..|.+..++..++.++...|++++|.+.++++.+
T Consensus 442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 5799999999999974999789999999999985149999999999998
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=192.28 Aligned_cols=91 Identities=9% Similarity=0.024 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 69999999995399337999999988589998874599999999942994289999999997799977997999999998
Q 002701 156 GFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLC 235 (890)
Q Consensus 156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (890)
.+..++..+.+.|++++|+..|+++....+. +..++..+..++.+.|++++|...|+++.+.+ +.+..++..++.++.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
T ss_conf 9999999999864299999999999863899-84899999999998689999999999998609-862899999999999
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 0399526999999
Q 002701 236 ELKDFVKAKEMIH 248 (890)
Q Consensus 236 ~~g~~~~A~~~~~ 248 (890)
..|++++|...|+
T Consensus 105 ~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 105 SLGNFTDAMFDLS 117 (537)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHH
T ss_conf 8389999999999
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=184.47 Aligned_cols=380 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99889999999996499898988899999999935999999999999987799989689999999999729967999999
Q 002701 483 VKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELL 562 (890)
Q Consensus 483 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 562 (890)
.....+...+.+.... .+.+...+..++..+.+.|++++|...|+++.+.. +.+...+..++..+...|++++|...+
T Consensus 6 ~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 6 HHSSGVDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 4554446564235665-37899999999999998799999999999999849-716899999999999879979999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH------------HHHCCCHHH
Q ss_conf 99943999999999999999998079957999999999775998788---889999999------------994599489
Q 002701 563 DEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNE---MCYSALLHG------------YCKEGRLKD 627 (890)
Q Consensus 563 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~------------~~~~g~~~~ 627 (890)
+++.+.+.. +..++..++..+...|++++|...++.+....+. +. ..+..++.. +...|++++
T Consensus 84 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 84 TKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999844987-4899999999999869999999999999724999-70168899999999999999999999998689999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999885998899989999999982599479999999998779997789999999999811999999999999996
Q 002701 628 ALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIG 707 (890)
Q Consensus 628 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 707 (890)
|...++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...|+.+..
T Consensus 162 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999986889-76999999999987799999999999999868-89879999999999975999999999999987
Q ss_pred CCCCCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 8999899889999------------9999952996699999999987899988-----8879999999993599989999
Q 002701 708 EGCVPNVVTYTAL------------INGLCKAGYMDKAELLCKEMLASGSLPN-----QITYGCFLDYLTREGKMEKAVQ 770 (890)
Q Consensus 708 ~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~ 770 (890)
.. +.+...+..+ +..+...|++++|+..++++++. .|+ ...+..++..+.+.|++++|+.
T Consensus 240 ~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 240 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 59-980899999999999999999999998717999999999999850--873368999999999999998788999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH------------HHHHHCC-----
Q ss_conf 999995299988899999999999149989999999998879988777-8899999------------9999619-----
Q 002701 771 LHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTII------------YQYCKRG----- 832 (890)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~------------~~~~~~g----- 832 (890)
.++.+++..|.+..++..++.++...|++++|...++++.+ ..|+. ..+..+. ..|...|
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
T ss_conf 99999884845489999999999870379999999999988--5935299999999999986433505699981898668
Q ss_pred CHHHHHHHHHH-HHHCCCCCC-----------HHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99899999999-985999999-----------98899999999823997899999
Q 002701 833 YLHEALKLWDS-MLNKGLKPD-----------PLAYNFLIYGCCIRGEITKAFEL 875 (890)
Q Consensus 833 ~~~~A~~~~~~-~~~~g~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~ 875 (890)
+.+++.+.+++ .++ ..|+ ...+..+..+|...|+.+++..+
T Consensus 395 ~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~y 447 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKF 447 (450)
T ss_dssp CTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC---
T ss_pred CHHHHHHHHHHHHHH--HCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf 989999999999997--59897999347899999999999999986899999763
Done!