Query 002704
Match_columns 890
No_of_seqs 550 out of 4273
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:27:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5E-100 1E-104 886.2 52.9 841 16-883 9-884 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.8E-62 4E-67 606.1 52.5 626 155-851 184-913 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.7E-44 3.8E-49 383.6 16.3 281 160-443 1-285 (287)
4 PLN03210 Resistant to P. syrin 99.9 4.3E-21 9.4E-26 238.5 18.5 289 537-868 589-907 (1153)
5 PLN00113 leucine-rich repeat r 99.9 4.1E-21 8.9E-26 239.2 17.2 303 513-842 116-439 (968)
6 PLN00113 leucine-rich repeat r 99.9 5.7E-21 1.2E-25 237.9 18.5 267 512-789 137-416 (968)
7 KOG0444 Cytoskeletal regulator 99.8 2.5E-22 5.4E-27 211.6 -3.2 324 495-849 34-380 (1255)
8 KOG4194 Membrane glycoprotein 99.8 2.2E-19 4.8E-24 188.7 4.0 297 513-841 100-426 (873)
9 KOG4194 Membrane glycoprotein 99.7 3.7E-19 8E-24 187.0 2.2 287 516-838 150-446 (873)
10 KOG0444 Cytoskeletal regulator 99.7 7.5E-20 1.6E-24 193.1 -6.5 300 511-850 28-357 (1255)
11 KOG0472 Leucine-rich repeat pr 99.6 3.7E-18 8.1E-23 172.0 -4.4 311 509-842 200-539 (565)
12 KOG0618 Serine/threonine phosp 99.6 1.5E-16 3.2E-21 176.9 0.7 101 516-619 46-147 (1081)
13 PRK15387 E3 ubiquitin-protein 99.6 3.7E-14 7.9E-19 163.6 15.4 255 494-818 202-456 (788)
14 KOG0472 Leucine-rich repeat pr 99.5 3.5E-17 7.6E-22 165.0 -9.8 103 720-840 202-306 (565)
15 KOG4658 Apoptotic ATPase [Sign 99.5 1.3E-14 2.8E-19 171.1 6.2 315 505-850 535-866 (889)
16 KOG0617 Ras suppressor protein 99.5 7.6E-16 1.6E-20 137.4 -4.8 164 505-689 23-189 (264)
17 KOG0618 Serine/threonine phosp 99.4 7.7E-15 1.7E-19 163.5 -1.9 284 516-838 220-504 (1081)
18 PRK15370 E3 ubiquitin-protein 99.4 3.2E-13 6.9E-18 157.1 10.1 243 517-816 180-424 (754)
19 KOG0617 Ras suppressor protein 99.4 5.4E-15 1.2E-19 132.0 -4.5 167 528-743 24-191 (264)
20 PRK15370 E3 ubiquitin-protein 99.4 1.1E-12 2.3E-17 152.7 11.8 241 497-789 182-427 (754)
21 PRK15387 E3 ubiquitin-protein 99.4 1.4E-12 3.1E-17 150.6 11.9 254 516-842 202-456 (788)
22 PRK00411 cdc6 cell division co 99.3 1.5E-10 3.2E-15 128.9 24.6 296 154-468 29-358 (394)
23 KOG4237 Extracellular matrix p 99.3 6.2E-14 1.3E-18 141.8 -3.3 276 496-788 49-333 (498)
24 PRK04841 transcriptional regul 99.3 9.6E-11 2.1E-15 145.7 24.3 292 154-487 13-332 (903)
25 TIGR03015 pepcterm_ATPase puta 99.2 1.9E-09 4.2E-14 113.2 23.7 182 174-363 41-242 (269)
26 TIGR02928 orc1/cdc6 family rep 99.2 4.7E-09 1E-13 115.6 27.0 296 155-468 15-350 (365)
27 PF01637 Arch_ATPase: Archaeal 99.2 9.2E-11 2E-15 120.6 12.2 195 157-358 1-233 (234)
28 TIGR00635 ruvB Holliday juncti 99.2 9.6E-10 2.1E-14 117.6 17.6 276 155-471 4-292 (305)
29 cd00116 LRR_RI Leucine-rich re 99.1 4.1E-11 8.9E-16 129.7 5.4 238 536-789 22-290 (319)
30 PRK00080 ruvB Holliday junctio 99.1 1E-09 2.2E-14 118.1 14.7 274 155-469 25-311 (328)
31 cd00116 LRR_RI Leucine-rich re 99.0 1.5E-10 3.1E-15 125.4 3.8 231 542-788 3-261 (319)
32 COG2909 MalT ATP-dependent tra 99.0 2.8E-08 6.2E-13 111.8 20.2 292 156-489 20-340 (894)
33 COG3899 Predicted ATPase [Gene 99.0 9.7E-09 2.1E-13 122.5 17.6 308 157-486 2-385 (849)
34 KOG4237 Extracellular matrix p 99.0 8.7E-11 1.9E-15 119.4 -0.1 246 510-766 86-358 (498)
35 PF14580 LRR_9: Leucine-rich r 99.0 8.2E-10 1.8E-14 104.6 5.7 117 525-647 7-126 (175)
36 PF05729 NACHT: NACHT domain 98.9 4.7E-09 1E-13 101.4 11.0 142 177-327 1-163 (166)
37 PRK06893 DNA replication initi 98.9 4.9E-09 1.1E-13 106.1 10.7 156 175-363 38-207 (229)
38 PTZ00112 origin recognition co 98.9 1E-07 2.2E-12 108.1 21.4 209 154-364 754-987 (1164)
39 KOG4341 F-box protein containi 98.9 7.3E-11 1.6E-15 121.0 -3.3 294 537-848 138-443 (483)
40 KOG3207 Beta-tubulin folding c 98.9 4.8E-10 1.1E-14 115.7 1.4 210 534-788 118-337 (505)
41 PF14580 LRR_9: Leucine-rich r 98.8 4.4E-09 9.5E-14 99.7 4.9 129 511-644 15-150 (175)
42 COG2256 MGS1 ATPase related to 98.8 2.1E-07 4.6E-12 96.2 17.2 159 167-356 39-209 (436)
43 TIGR03420 DnaA_homol_Hda DnaA 98.8 4.2E-08 9.2E-13 100.0 12.3 170 160-362 22-204 (226)
44 KOG3207 Beta-tubulin folding c 98.8 1.4E-09 3E-14 112.4 0.7 161 513-689 119-287 (505)
45 KOG0532 Leucine-rich repeat (L 98.8 4.7E-10 1E-14 119.3 -3.7 194 516-764 76-270 (722)
46 KOG4341 F-box protein containi 98.8 5.2E-10 1.1E-14 114.8 -3.3 296 516-836 139-457 (483)
47 KOG2120 SCF ubiquitin ligase, 98.7 7.3E-10 1.6E-14 108.5 -3.2 85 588-686 187-273 (419)
48 PRK08727 hypothetical protein; 98.7 2.8E-07 6E-12 93.6 13.2 167 157-356 22-201 (233)
49 PRK13342 recombination factor 98.6 6.1E-07 1.3E-11 99.6 16.5 176 155-362 12-199 (413)
50 PRK07003 DNA polymerase III su 98.6 9.2E-07 2E-11 100.2 17.8 197 155-363 16-225 (830)
51 PRK04195 replication factor C 98.6 1.2E-06 2.6E-11 99.3 19.0 181 155-364 14-207 (482)
52 COG4886 Leucine-rich repeat (L 98.6 6.3E-08 1.4E-12 108.0 7.2 87 558-647 112-199 (394)
53 KOG2120 SCF ubiquitin ligase, 98.6 2.4E-09 5.2E-14 105.0 -3.9 88 609-711 185-272 (419)
54 COG1474 CDC6 Cdc6-related prot 98.6 4E-06 8.8E-11 90.1 20.2 202 155-360 17-239 (366)
55 KOG0532 Leucine-rich repeat (L 98.6 5.3E-09 1.1E-13 111.5 -1.9 126 515-646 121-246 (722)
56 KOG1259 Nischarin, modulator o 98.5 1.1E-08 2.4E-13 100.3 -0.5 131 512-648 281-413 (490)
57 TIGR02903 spore_lon_C ATP-depe 98.5 1E-05 2.2E-10 93.7 23.5 202 155-362 154-398 (615)
58 KOG2028 ATPase related to the 98.5 1E-06 2.3E-11 89.1 13.2 162 167-354 153-331 (554)
59 COG4886 Leucine-rich repeat (L 98.5 8.1E-08 1.8E-12 107.1 5.6 122 519-645 97-220 (394)
60 PF13173 AAA_14: AAA domain 98.5 1.8E-07 3.8E-12 85.4 6.5 120 176-319 2-127 (128)
61 PRK12402 replication factor C 98.5 1.4E-06 3E-11 94.9 14.6 193 155-357 15-224 (337)
62 PLN03150 hypothetical protein; 98.5 2.9E-07 6.3E-12 107.4 9.4 108 538-646 419-527 (623)
63 KOG1909 Ran GTPase-activating 98.5 4.6E-08 9.9E-13 98.7 2.2 67 720-789 237-310 (382)
64 KOG1259 Nischarin, modulator o 98.5 3.7E-08 8E-13 96.7 1.5 58 586-646 284-341 (490)
65 PRK14961 DNA polymerase III su 98.5 3.4E-06 7.4E-11 91.9 17.0 190 155-357 16-218 (363)
66 PRK14949 DNA polymerase III su 98.5 1.5E-06 3.3E-11 100.5 14.7 180 155-359 16-220 (944)
67 PRK05564 DNA polymerase III su 98.5 3.1E-06 6.7E-11 90.5 16.2 176 156-358 5-189 (313)
68 PLN03025 replication factor C 98.5 1.5E-06 3.3E-11 93.1 13.8 181 155-357 13-198 (319)
69 cd00009 AAA The AAA+ (ATPases 98.5 8.2E-07 1.8E-11 83.7 10.5 123 158-297 1-130 (151)
70 PRK14963 DNA polymerase III su 98.5 3.3E-06 7.1E-11 94.9 16.5 195 155-363 14-222 (504)
71 PRK00440 rfc replication facto 98.5 3.4E-06 7.4E-11 91.1 16.1 180 155-357 17-201 (319)
72 PTZ00202 tuzin; Provisional 98.5 6.7E-06 1.5E-10 86.9 17.2 166 151-327 258-434 (550)
73 PRK08084 DNA replication initi 98.5 1.1E-06 2.4E-11 89.4 11.3 175 155-362 23-212 (235)
74 PF05496 RuvB_N: Holliday junc 98.5 1.6E-06 3.4E-11 84.0 11.5 176 155-364 24-226 (233)
75 cd01128 rho_factor Transcripti 98.5 4.1E-07 8.9E-12 92.1 7.9 92 174-268 14-113 (249)
76 PRK12323 DNA polymerase III su 98.4 2.7E-06 5.8E-11 95.3 14.5 197 155-359 16-225 (700)
77 PRK14960 DNA polymerase III su 98.4 3.5E-06 7.5E-11 94.7 15.2 193 155-359 15-219 (702)
78 PRK09087 hypothetical protein; 98.4 3E-06 6.6E-11 85.2 13.5 144 175-360 43-196 (226)
79 PRK14957 DNA polymerase III su 98.4 4.7E-06 1E-10 93.7 15.6 185 155-363 16-225 (546)
80 PRK14956 DNA polymerase III su 98.4 3.9E-06 8.5E-11 91.7 14.5 190 155-356 18-219 (484)
81 COG2255 RuvB Holliday junction 98.4 1.5E-05 3.3E-10 78.7 16.6 176 155-364 26-228 (332)
82 PRK13341 recombination factor 98.4 3.5E-06 7.5E-11 98.4 14.1 168 155-356 28-214 (725)
83 PRK05642 DNA replication initi 98.4 3.5E-06 7.6E-11 85.5 12.4 155 176-363 45-212 (234)
84 PRK14962 DNA polymerase III su 98.4 7E-06 1.5E-10 91.5 15.5 186 155-363 14-223 (472)
85 PRK06645 DNA polymerase III su 98.3 1.2E-05 2.7E-10 89.8 17.0 193 155-356 21-226 (507)
86 PF13401 AAA_22: AAA domain; P 98.3 7.5E-07 1.6E-11 82.0 5.9 117 175-296 3-125 (131)
87 PF13191 AAA_16: AAA ATPase do 98.3 1.2E-06 2.6E-11 86.2 7.5 44 157-200 2-48 (185)
88 TIGR02397 dnaX_nterm DNA polym 98.3 1.7E-05 3.7E-10 87.0 17.2 182 155-360 14-219 (355)
89 PF00308 Bac_DnaA: Bacterial d 98.3 4.1E-06 8.9E-11 83.9 11.1 164 176-361 34-210 (219)
90 PRK07471 DNA polymerase III su 98.3 2.3E-05 4.9E-10 84.5 16.7 196 155-360 19-239 (365)
91 PRK07994 DNA polymerase III su 98.3 7.1E-06 1.5E-10 93.7 13.4 193 155-359 16-220 (647)
92 PRK08691 DNA polymerase III su 98.3 9.2E-06 2E-10 92.3 14.1 193 155-359 16-220 (709)
93 PF13855 LRR_8: Leucine rich r 98.3 6.1E-07 1.3E-11 69.6 3.3 56 563-619 2-59 (61)
94 PRK14958 DNA polymerase III su 98.3 1.1E-05 2.3E-10 91.0 14.6 180 155-358 16-219 (509)
95 PRK05896 DNA polymerase III su 98.3 1.2E-05 2.6E-10 90.5 14.7 195 155-361 16-223 (605)
96 PRK08903 DnaA regulatory inact 98.3 4.8E-06 1E-10 84.8 10.8 170 158-364 22-204 (227)
97 PRK07940 DNA polymerase III su 98.3 1.9E-05 4.1E-10 85.8 16.0 186 155-359 5-213 (394)
98 PRK14955 DNA polymerase III su 98.3 8.1E-06 1.8E-10 90.0 13.1 198 155-358 16-227 (397)
99 PRK09376 rho transcription ter 98.2 2.7E-06 5.8E-11 89.6 8.2 96 167-268 159-266 (416)
100 PLN03150 hypothetical protein; 98.2 2.9E-06 6.3E-11 99.1 9.3 110 516-626 419-532 (623)
101 PRK14964 DNA polymerase III su 98.2 2.6E-05 5.5E-10 86.5 16.1 180 155-357 13-215 (491)
102 TIGR01242 26Sp45 26S proteasom 98.2 3.2E-06 7E-11 92.4 8.9 171 155-353 122-328 (364)
103 PRK09112 DNA polymerase III su 98.2 1.4E-05 2.9E-10 85.8 13.0 196 155-360 23-241 (351)
104 TIGR00678 holB DNA polymerase 98.2 3.7E-05 8.1E-10 75.6 15.2 160 166-355 3-187 (188)
105 PRK14951 DNA polymerase III su 98.2 2.3E-05 4.9E-10 89.5 15.2 197 155-359 16-225 (618)
106 PRK14970 DNA polymerase III su 98.2 3.6E-05 7.7E-10 84.6 16.2 184 155-361 17-212 (367)
107 PRK14087 dnaA chromosomal repl 98.2 1.1E-05 2.3E-10 89.9 12.1 166 177-362 142-322 (450)
108 PRK14952 DNA polymerase III su 98.2 3.8E-05 8.2E-10 87.4 16.1 197 155-363 13-224 (584)
109 PRK14969 DNA polymerase III su 98.2 2.4E-05 5.3E-10 88.8 14.5 184 155-361 16-223 (527)
110 PRK07764 DNA polymerase III su 98.2 3.2E-05 6.9E-10 91.6 15.7 189 155-356 15-218 (824)
111 KOG0531 Protein phosphatase 1, 98.1 2.8E-07 6E-12 102.9 -1.6 124 516-646 73-198 (414)
112 PRK09111 DNA polymerase III su 98.1 3.6E-05 7.8E-10 88.1 15.4 196 155-360 24-234 (598)
113 KOG1909 Ran GTPase-activating 98.1 8.1E-07 1.8E-11 89.9 1.8 217 534-789 27-282 (382)
114 PRK14959 DNA polymerase III su 98.1 3.7E-05 8E-10 87.1 15.0 197 155-364 16-226 (624)
115 PF13855 LRR_8: Leucine rich r 98.1 2.8E-06 6.2E-11 65.8 4.2 60 537-598 1-61 (61)
116 TIGR00362 DnaA chromosomal rep 98.1 4.2E-05 9.2E-10 85.1 14.5 159 177-357 137-308 (405)
117 TIGR00767 rho transcription te 98.1 9.1E-06 2E-10 86.2 8.6 91 174-268 166-265 (415)
118 PRK14954 DNA polymerase III su 98.1 7.5E-05 1.6E-09 85.6 16.6 201 155-360 16-230 (620)
119 KOG2227 Pre-initiation complex 98.1 0.0002 4.2E-09 76.0 17.6 205 154-363 149-376 (529)
120 PRK14953 DNA polymerase III su 98.1 0.00011 2.3E-09 82.6 16.8 182 155-360 16-221 (486)
121 PRK07133 DNA polymerase III su 98.1 7.9E-05 1.7E-09 85.8 15.9 185 155-357 18-217 (725)
122 PRK14971 DNA polymerase III su 98.0 8E-05 1.7E-09 86.0 15.9 179 155-357 17-220 (614)
123 KOG1859 Leucine-rich repeat pr 98.0 2.9E-07 6.2E-12 101.1 -4.1 163 501-687 95-268 (1096)
124 TIGR02881 spore_V_K stage V sp 98.0 3.2E-05 6.8E-10 80.4 11.0 154 156-331 7-195 (261)
125 PRK08451 DNA polymerase III su 98.0 0.00016 3.4E-09 81.2 16.9 178 155-360 14-219 (535)
126 PRK03992 proteasome-activating 98.0 3.9E-05 8.4E-10 84.2 11.8 171 155-353 131-337 (389)
127 KOG0989 Replication factor C, 98.0 5.4E-05 1.2E-09 75.8 11.3 182 155-354 36-225 (346)
128 PRK14950 DNA polymerase III su 98.0 0.00013 2.9E-09 84.4 16.5 193 155-359 16-221 (585)
129 PRK14088 dnaA chromosomal repl 98.0 4.2E-05 9.1E-10 85.2 11.7 160 176-357 130-303 (440)
130 PRK00149 dnaA chromosomal repl 98.0 4.3E-05 9.3E-10 86.1 11.9 159 177-357 149-320 (450)
131 PRK06305 DNA polymerase III su 98.0 0.00016 3.4E-09 80.7 16.0 182 155-360 17-224 (451)
132 TIGR02880 cbbX_cfxQ probable R 98.0 9.3E-05 2E-09 77.4 13.1 132 178-329 60-210 (284)
133 KOG2982 Uncharacterized conser 98.0 3.5E-06 7.6E-11 83.2 2.2 80 700-785 200-287 (418)
134 CHL00181 cbbX CbbX; Provisiona 97.9 0.00015 3.2E-09 75.8 14.3 134 177-330 60-212 (287)
135 PHA02544 44 clamp loader, smal 97.9 0.00015 3.3E-09 78.0 14.9 145 155-325 21-171 (316)
136 PRK14948 DNA polymerase III su 97.9 0.00022 4.8E-09 82.3 16.9 196 155-360 16-223 (620)
137 PRK12422 chromosomal replicati 97.9 7.5E-05 1.6E-09 82.9 12.5 153 177-353 142-307 (445)
138 PRK11331 5-methylcytosine-spec 97.9 5.7E-05 1.2E-09 81.7 11.1 68 156-226 176-243 (459)
139 PRK06620 hypothetical protein; 97.9 3.7E-05 7.9E-10 76.7 9.1 134 177-357 45-187 (214)
140 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00011 2.5E-09 88.2 14.6 178 155-353 187-390 (852)
141 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 57.1 3.6 33 587-619 2-34 (44)
142 PRK06647 DNA polymerase III su 97.9 0.00027 5.7E-09 80.7 16.6 193 155-359 16-220 (563)
143 PF14516 AAA_35: AAA-like doma 97.9 0.00068 1.5E-08 72.8 18.7 201 154-366 10-246 (331)
144 KOG0531 Protein phosphatase 1, 97.9 1.3E-06 2.8E-11 97.5 -2.4 101 514-619 94-196 (414)
145 PRK15386 type III secretion pr 97.9 5.2E-05 1.1E-09 81.1 9.3 73 558-643 48-121 (426)
146 PF05673 DUF815: Protein of un 97.9 0.00043 9.3E-09 68.4 14.9 46 155-200 27-76 (249)
147 PTZ00361 26 proteosome regulat 97.9 8.6E-05 1.9E-09 81.6 11.0 171 155-352 183-388 (438)
148 KOG2543 Origin recognition com 97.8 0.00011 2.5E-09 75.7 10.8 167 154-326 5-192 (438)
149 PF05621 TniB: Bacterial TniB 97.8 0.00051 1.1E-08 70.2 15.1 194 164-360 46-262 (302)
150 PRK14086 dnaA chromosomal repl 97.8 0.00014 3E-09 82.1 12.1 158 177-356 315-485 (617)
151 KOG1859 Leucine-rich repeat pr 97.8 7.2E-07 1.6E-11 98.1 -6.1 131 511-647 160-292 (1096)
152 PRK14965 DNA polymerase III su 97.8 0.00029 6.3E-09 81.2 14.5 195 155-362 16-224 (576)
153 PF12799 LRR_4: Leucine Rich r 97.8 3.1E-05 6.7E-10 54.8 3.8 41 562-603 1-41 (44)
154 PTZ00454 26S protease regulato 97.8 0.00014 3E-09 79.4 10.9 172 155-353 145-351 (398)
155 TIGR03689 pup_AAA proteasome A 97.7 0.00033 7.2E-09 78.1 13.6 161 156-329 183-380 (512)
156 TIGR02639 ClpA ATP-dependent C 97.7 0.00012 2.6E-09 87.4 11.0 155 155-327 182-358 (731)
157 PRK05563 DNA polymerase III su 97.7 0.00072 1.6E-08 77.6 16.6 190 155-357 16-218 (559)
158 PRK15386 type III secretion pr 97.7 7.4E-05 1.6E-09 79.9 7.5 82 514-606 51-135 (426)
159 KOG2982 Uncharacterized conser 97.7 1.4E-05 3E-10 79.1 1.5 203 519-740 49-265 (418)
160 COG3903 Predicted ATPase [Gene 97.7 4E-05 8.7E-10 80.4 4.8 289 175-487 13-314 (414)
161 KOG1947 Leucine rich repeat pr 97.7 9.5E-06 2.1E-10 93.4 -0.3 112 561-685 187-307 (482)
162 CHL00095 clpC Clp protease ATP 97.6 0.00032 7E-09 84.8 12.4 155 155-326 179-353 (821)
163 COG1373 Predicted ATPase (AAA+ 97.6 0.00075 1.6E-08 74.1 13.5 136 160-323 22-163 (398)
164 PRK10865 protein disaggregatio 97.6 0.00038 8.2E-09 84.1 11.5 46 155-200 178-223 (857)
165 COG1222 RPT1 ATP-dependent 26S 97.6 0.0023 4.9E-08 66.0 14.9 196 156-379 152-392 (406)
166 PRK05707 DNA polymerase III su 97.5 0.0022 4.8E-08 68.3 15.8 94 258-359 106-203 (328)
167 TIGR00763 lon ATP-dependent pr 97.5 0.0055 1.2E-07 73.9 20.9 46 155-200 320-371 (775)
168 KOG4579 Leucine-rich repeat (L 97.5 1.7E-05 3.7E-10 69.4 -0.4 109 517-628 29-141 (177)
169 TIGR01241 FtsH_fam ATP-depende 97.5 0.0024 5.2E-08 72.9 16.9 172 155-353 55-260 (495)
170 COG0593 DnaA ATPase involved i 97.5 0.00055 1.2E-08 73.5 10.5 149 175-348 112-275 (408)
171 KOG0733 Nuclear AAA ATPase (VC 97.5 0.00097 2.1E-08 73.0 12.3 152 156-330 191-377 (802)
172 KOG3665 ZYG-1-like serine/thre 97.5 8E-05 1.7E-09 86.8 4.3 130 515-646 122-262 (699)
173 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00045 9.7E-09 83.9 10.9 155 155-327 173-349 (852)
174 PRK07399 DNA polymerase III su 97.5 0.0033 7.1E-08 66.6 16.0 195 156-359 5-221 (314)
175 PRK11034 clpA ATP-dependent Cl 97.5 0.00054 1.2E-08 80.8 11.1 155 156-327 187-362 (758)
176 COG3267 ExeA Type II secretory 97.5 0.007 1.5E-07 59.7 16.7 183 173-361 48-247 (269)
177 PRK10536 hypothetical protein; 97.5 0.00062 1.4E-08 68.2 9.7 43 156-200 56-98 (262)
178 KOG3665 ZYG-1-like serine/thre 97.5 6.6E-05 1.4E-09 87.5 3.3 139 536-685 121-262 (699)
179 PRK08116 hypothetical protein; 97.5 0.00015 3.1E-09 75.1 5.2 103 177-297 115-221 (268)
180 CHL00176 ftsH cell division pr 97.4 0.0016 3.4E-08 75.5 14.0 171 155-352 183-387 (638)
181 smart00382 AAA ATPases associa 97.4 0.00053 1.2E-08 63.8 8.3 88 177-271 3-91 (148)
182 TIGR00602 rad24 checkpoint pro 97.4 0.00058 1.3E-08 78.3 9.7 46 155-200 84-134 (637)
183 PRK08181 transposase; Validate 97.4 0.0047 1E-07 63.6 15.0 105 169-297 101-209 (269)
184 COG0466 Lon ATP-dependent Lon 97.4 0.0022 4.7E-08 72.1 13.1 157 155-327 323-508 (782)
185 PRK12377 putative replication 97.4 0.00042 9E-09 70.3 7.0 74 175-268 100-173 (248)
186 PRK08118 topology modulation p 97.4 0.00012 2.6E-09 70.0 2.9 36 177-212 2-37 (167)
187 PRK08769 DNA polymerase III su 97.3 0.0055 1.2E-07 64.7 15.5 181 161-360 10-209 (319)
188 PF10443 RNA12: RNA12 protein; 97.3 0.0068 1.5E-07 65.0 16.2 198 160-369 1-288 (431)
189 PRK10787 DNA-binding ATP-depen 97.3 0.0062 1.3E-07 72.6 17.6 158 154-327 321-506 (784)
190 KOG0741 AAA+-type ATPase [Post 97.3 0.0071 1.5E-07 65.2 15.7 156 175-363 537-716 (744)
191 PRK12608 transcription termina 97.2 0.0018 4E-08 68.6 10.4 102 164-267 120-229 (380)
192 PRK08058 DNA polymerase III su 97.2 0.007 1.5E-07 64.9 15.0 162 156-326 6-181 (329)
193 PF04665 Pox_A32: Poxvirus A32 97.2 0.00093 2E-08 66.7 7.4 36 177-215 14-49 (241)
194 PRK06871 DNA polymerase III su 97.2 0.013 2.9E-07 61.9 16.4 177 162-356 9-200 (325)
195 KOG0730 AAA+-type ATPase [Post 97.2 0.004 8.6E-08 69.3 12.5 164 156-343 435-631 (693)
196 KOG1644 U2-associated snRNP A' 97.2 0.00058 1.3E-08 64.4 5.2 101 516-618 43-149 (233)
197 KOG1514 Origin recognition com 97.2 0.0089 1.9E-07 67.0 15.1 202 155-363 396-625 (767)
198 PF00004 AAA: ATPase family as 97.2 0.0007 1.5E-08 62.1 5.7 22 179-200 1-22 (132)
199 PRK06835 DNA replication prote 97.1 0.008 1.7E-07 63.9 14.2 37 176-215 183-219 (329)
200 KOG1947 Leucine rich repeat pr 97.1 0.00014 3E-09 83.8 1.0 113 535-647 186-308 (482)
201 PF13177 DNA_pol3_delta2: DNA 97.1 0.0033 7.2E-08 59.7 10.3 137 159-315 1-162 (162)
202 KOG0991 Replication factor C, 97.1 0.001 2.2E-08 63.9 6.3 98 155-270 27-125 (333)
203 KOG2228 Origin recognition com 97.1 0.0029 6.4E-08 64.5 9.9 170 156-328 25-220 (408)
204 PRK07261 topology modulation p 97.1 0.0021 4.6E-08 61.8 8.4 66 178-268 2-67 (171)
205 TIGR01243 CDC48 AAA family ATP 97.1 0.003 6.6E-08 75.8 11.5 173 156-355 179-383 (733)
206 PRK06090 DNA polymerase III su 97.1 0.032 6.9E-07 58.9 17.6 176 162-359 10-201 (319)
207 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0048 1E-07 69.1 11.8 173 155-353 228-429 (489)
208 KOG1644 U2-associated snRNP A' 97.0 0.00074 1.6E-08 63.7 4.4 81 563-646 43-125 (233)
209 TIGR02639 ClpA ATP-dependent C 97.0 0.0028 6.1E-08 75.9 10.6 46 155-200 454-508 (731)
210 COG0542 clpA ATP-binding subun 97.0 0.0086 1.9E-07 69.4 13.8 103 155-268 491-603 (786)
211 KOG2004 Mitochondrial ATP-depe 96.9 0.0084 1.8E-07 67.2 12.4 158 155-327 411-596 (906)
212 PRK07993 DNA polymerase III su 96.9 0.028 6.1E-07 60.1 16.0 178 162-357 9-202 (334)
213 COG2812 DnaX DNA polymerase II 96.9 0.0053 1.1E-07 68.2 10.3 187 155-354 16-215 (515)
214 PRK06921 hypothetical protein; 96.9 0.002 4.4E-08 66.5 6.7 39 175-215 116-154 (266)
215 KOG2123 Uncharacterized conser 96.9 0.00011 2.5E-09 72.2 -2.4 100 537-641 19-124 (388)
216 PF02562 PhoH: PhoH-like prote 96.9 0.0014 3E-08 64.0 5.0 53 159-214 4-56 (205)
217 PRK04132 replication factor C 96.8 0.017 3.8E-07 68.4 14.6 154 184-360 574-732 (846)
218 TIGR02640 gas_vesic_GvpN gas v 96.8 0.012 2.7E-07 60.9 12.0 55 162-224 9-63 (262)
219 KOG4579 Leucine-rich repeat (L 96.8 0.00041 8.9E-09 61.0 0.7 88 515-605 53-142 (177)
220 COG5238 RNA1 Ran GTPase-activa 96.8 0.0011 2.3E-08 65.3 3.4 42 605-646 88-132 (388)
221 TIGR01243 CDC48 AAA family ATP 96.7 0.014 3E-07 70.3 13.2 170 156-353 454-657 (733)
222 PRK09183 transposase/IS protei 96.7 0.0031 6.7E-08 65.0 6.6 25 176-200 102-126 (259)
223 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0024 5.1E-08 67.5 5.7 57 156-212 52-118 (361)
224 KOG2739 Leucine-rich acidic nu 96.7 0.00098 2.1E-08 65.8 2.6 85 559-644 62-153 (260)
225 PF13207 AAA_17: AAA domain; P 96.7 0.0013 2.8E-08 59.3 3.3 23 178-200 1-23 (121)
226 COG1484 DnaC DNA replication p 96.7 0.0073 1.6E-07 61.9 9.0 74 175-268 104-177 (254)
227 PF07693 KAP_NTPase: KAP famil 96.7 0.057 1.2E-06 58.3 16.6 40 161-200 2-44 (325)
228 PRK06526 transposase; Provisio 96.6 0.0016 3.5E-08 66.6 3.9 25 176-200 98-122 (254)
229 PRK10865 protein disaggregatio 96.6 0.0088 1.9E-07 72.5 10.8 46 155-200 568-622 (857)
230 KOG2739 Leucine-rich acidic nu 96.6 0.00095 2.1E-08 65.9 2.0 86 558-647 39-129 (260)
231 COG1223 Predicted ATPase (AAA+ 96.6 0.037 8E-07 54.5 12.6 170 155-352 121-318 (368)
232 PF01695 IstB_IS21: IstB-like 96.6 0.0013 2.8E-08 63.5 2.8 74 175-269 46-119 (178)
233 PRK04296 thymidine kinase; Pro 96.6 0.0019 4.1E-08 63.3 3.8 113 177-298 3-117 (190)
234 CHL00095 clpC Clp protease ATP 96.5 0.0046 9.9E-08 75.0 7.5 46 155-200 509-563 (821)
235 TIGR03346 chaperone_ClpB ATP-d 96.5 0.0074 1.6E-07 73.4 9.3 60 155-217 565-633 (852)
236 KOG0728 26S proteasome regulat 96.5 0.067 1.5E-06 52.2 13.6 195 159-377 151-386 (404)
237 PF00448 SRP54: SRP54-type pro 96.5 0.0073 1.6E-07 59.2 7.4 89 176-267 1-92 (196)
238 PRK07952 DNA replication prote 96.5 0.016 3.5E-07 58.7 10.1 88 163-269 84-173 (244)
239 TIGR02237 recomb_radB DNA repa 96.5 0.016 3.4E-07 58.1 9.9 48 175-226 11-58 (209)
240 PRK08939 primosomal protein Dn 96.5 0.014 3.1E-07 61.5 9.8 117 159-296 135-260 (306)
241 cd01393 recA_like RecA is a b 96.5 0.03 6.4E-07 56.9 11.9 90 175-268 18-124 (226)
242 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.012 2.5E-07 55.0 7.9 115 177-297 3-138 (159)
243 KOG0734 AAA+-type ATPase conta 96.5 0.027 5.9E-07 61.0 11.6 45 156-200 305-361 (752)
244 PRK12727 flagellar biosynthesi 96.4 0.098 2.1E-06 58.3 16.2 87 176-267 350-437 (559)
245 KOG1969 DNA replication checkp 96.4 0.0076 1.7E-07 67.7 7.7 72 175-269 325-398 (877)
246 KOG2035 Replication factor C, 96.4 0.044 9.5E-07 54.6 11.9 207 157-382 15-261 (351)
247 PRK06964 DNA polymerase III su 96.4 0.13 2.8E-06 55.0 16.5 92 257-360 131-226 (342)
248 PRK09361 radB DNA repair and r 96.4 0.0094 2E-07 60.5 7.8 46 175-224 22-67 (225)
249 TIGR02902 spore_lonB ATP-depen 96.4 0.062 1.3E-06 61.7 15.0 44 156-199 66-109 (531)
250 COG0470 HolB ATPase involved i 96.4 0.016 3.4E-07 62.7 9.8 138 157-313 3-167 (325)
251 KOG0731 AAA+-type ATPase conta 96.3 0.049 1.1E-06 62.9 13.6 175 155-356 311-521 (774)
252 cd01133 F1-ATPase_beta F1 ATP 96.3 0.013 2.9E-07 59.8 8.2 90 175-267 68-172 (274)
253 PRK06696 uridine kinase; Valid 96.3 0.0055 1.2E-07 61.9 5.6 42 159-200 2-46 (223)
254 PF03215 Rad17: Rad17 cell cyc 96.3 0.017 3.6E-07 65.3 9.7 54 157-215 21-79 (519)
255 COG0542 clpA ATP-binding subun 96.3 0.013 2.8E-07 68.0 8.8 152 156-326 171-345 (786)
256 KOG0733 Nuclear AAA ATPase (VC 96.3 0.046 1E-06 60.4 12.3 154 175-353 544-718 (802)
257 PRK06762 hypothetical protein; 96.3 0.027 5.9E-07 53.9 9.7 24 177-200 3-26 (166)
258 COG2884 FtsE Predicted ATPase 96.3 0.022 4.7E-07 53.6 8.3 58 246-304 143-204 (223)
259 TIGR03345 VI_ClpV1 type VI sec 96.2 0.0077 1.7E-07 72.7 7.1 46 155-200 566-620 (852)
260 KOG0743 AAA+-type ATPase [Post 96.2 0.69 1.5E-05 50.0 20.5 150 177-363 236-413 (457)
261 cd00983 recA RecA is a bacter 96.2 0.011 2.5E-07 62.1 7.3 86 175-268 54-143 (325)
262 PRK05541 adenylylsulfate kinas 96.2 0.011 2.4E-07 57.3 6.8 36 175-213 6-41 (176)
263 COG2607 Predicted ATPase (AAA+ 96.2 0.019 4.1E-07 55.9 8.0 46 155-200 60-109 (287)
264 COG5238 RNA1 Ran GTPase-activa 96.2 0.002 4.2E-08 63.5 1.3 84 536-620 29-131 (388)
265 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.026 5.6E-07 57.7 9.7 91 175-267 18-124 (235)
266 cd01394 radB RadB. The archaea 96.2 0.042 9E-07 55.4 11.0 43 175-220 18-60 (218)
267 cd01131 PilT Pilus retraction 96.2 0.0057 1.2E-07 60.4 4.6 108 177-300 2-112 (198)
268 TIGR02012 tigrfam_recA protein 96.1 0.016 3.5E-07 60.9 7.9 86 175-268 54-143 (321)
269 cd03238 ABC_UvrA The excision 96.1 0.014 3.1E-07 56.0 7.0 125 175-311 20-161 (176)
270 cd01120 RecA-like_NTPases RecA 96.1 0.025 5.5E-07 53.8 8.8 39 178-219 1-39 (165)
271 PRK11034 clpA ATP-dependent Cl 96.1 0.008 1.7E-07 71.1 6.0 46 155-200 458-512 (758)
272 cd03247 ABCC_cytochrome_bd The 96.1 0.019 4.1E-07 55.8 7.7 127 175-311 27-169 (178)
273 PF14532 Sigma54_activ_2: Sigm 96.1 0.0034 7.5E-08 58.0 2.2 43 158-200 1-45 (138)
274 COG0572 Udk Uridine kinase [Nu 96.0 0.018 3.8E-07 56.2 6.9 79 175-259 7-85 (218)
275 PRK10733 hflB ATP-dependent me 96.0 0.042 9.1E-07 64.7 11.4 170 156-352 153-356 (644)
276 cd03216 ABC_Carb_Monos_I This 96.0 0.011 2.4E-07 56.4 5.5 117 175-301 25-146 (163)
277 COG0464 SpoVK ATPases of the A 96.0 0.11 2.4E-06 59.7 14.5 152 156-330 243-426 (494)
278 COG1875 NYN ribonuclease and A 95.9 0.017 3.7E-07 59.8 6.8 38 159-196 228-265 (436)
279 PRK08699 DNA polymerase III su 95.9 0.14 3.1E-06 54.5 14.1 67 259-326 114-184 (325)
280 COG1136 SalX ABC-type antimicr 95.9 0.031 6.7E-07 55.2 8.3 65 245-311 147-215 (226)
281 COG1102 Cmk Cytidylate kinase 95.9 0.019 4E-07 52.4 6.1 45 178-236 2-46 (179)
282 PRK15455 PrkA family serine pr 95.9 0.009 1.9E-07 66.6 5.0 45 156-200 77-127 (644)
283 KOG2123 Uncharacterized conser 95.9 0.0009 1.9E-08 66.0 -2.4 78 515-596 19-98 (388)
284 PRK09354 recA recombinase A; P 95.9 0.025 5.3E-07 60.1 8.1 86 175-268 59-148 (349)
285 PRK00771 signal recognition pa 95.9 0.051 1.1E-06 60.1 10.8 89 175-267 94-184 (437)
286 KOG0735 AAA+-type ATPase [Post 95.9 0.019 4.1E-07 64.4 7.3 152 176-352 431-608 (952)
287 PRK06547 hypothetical protein; 95.9 0.012 2.5E-07 56.4 5.1 35 166-200 5-39 (172)
288 PLN00020 ribulose bisphosphate 95.9 0.013 2.7E-07 61.7 5.5 27 174-200 146-172 (413)
289 COG4608 AppF ABC-type oligopep 95.8 0.038 8.3E-07 55.6 8.6 126 175-304 38-177 (268)
290 KOG0739 AAA+-type ATPase [Post 95.8 0.11 2.4E-06 52.2 11.5 170 155-353 133-335 (439)
291 cd03246 ABCC_Protease_Secretio 95.8 0.024 5.3E-07 54.7 7.0 26 175-200 27-52 (173)
292 cd03115 SRP The signal recogni 95.8 0.032 6.9E-07 53.9 7.9 23 178-200 2-24 (173)
293 TIGR02238 recomb_DMC1 meiotic 95.8 0.056 1.2E-06 57.2 10.2 92 175-267 95-200 (313)
294 PF08423 Rad51: Rad51; InterP 95.8 0.034 7.4E-07 57.2 8.4 91 176-267 38-142 (256)
295 PTZ00494 tuzin-like protein; P 95.8 0.44 9.5E-06 51.2 16.3 163 154-327 370-544 (664)
296 COG1618 Predicted nucleotide k 95.8 0.011 2.4E-07 53.8 4.1 24 177-200 6-29 (179)
297 cd03222 ABC_RNaseL_inhibitor T 95.8 0.023 4.9E-07 54.7 6.6 26 175-200 24-49 (177)
298 PTZ00301 uridine kinase; Provi 95.8 0.017 3.8E-07 57.1 5.8 25 176-200 3-27 (210)
299 cd03223 ABCD_peroxisomal_ALDP 95.7 0.03 6.6E-07 53.5 7.3 125 175-311 26-160 (166)
300 cd03228 ABCC_MRP_Like The MRP 95.7 0.034 7.4E-07 53.5 7.7 126 175-311 27-167 (171)
301 cd03214 ABC_Iron-Siderophores_ 95.7 0.022 4.7E-07 55.4 6.4 122 175-300 24-161 (180)
302 KOG0744 AAA+-type ATPase [Post 95.7 0.033 7.1E-07 56.7 7.5 81 176-268 177-260 (423)
303 PHA00729 NTP-binding motif con 95.7 0.013 2.9E-07 57.8 4.8 36 165-200 6-41 (226)
304 COG0465 HflB ATP-dependent Zn 95.7 0.087 1.9E-06 59.6 11.7 173 155-355 150-357 (596)
305 TIGR00390 hslU ATP-dependent p 95.6 0.026 5.6E-07 60.8 6.8 75 155-232 12-104 (441)
306 cd03230 ABC_DR_subfamily_A Thi 95.6 0.026 5.7E-07 54.4 6.3 120 175-301 25-159 (173)
307 PRK07667 uridine kinase; Provi 95.6 0.025 5.4E-07 55.7 6.2 37 164-200 3-41 (193)
308 PF00485 PRK: Phosphoribulokin 95.6 0.084 1.8E-06 52.0 10.0 82 178-262 1-87 (194)
309 PRK13531 regulatory ATPase Rav 95.6 0.02 4.3E-07 63.1 5.8 44 155-200 20-63 (498)
310 cd01129 PulE-GspE PulE/GspE Th 95.5 0.034 7.4E-07 57.5 7.2 104 159-275 63-166 (264)
311 KOG0736 Peroxisome assembly fa 95.5 0.081 1.7E-06 60.2 10.3 91 156-269 673-775 (953)
312 PF00006 ATP-synt_ab: ATP synt 95.5 0.063 1.4E-06 53.2 8.6 93 168-267 6-114 (215)
313 COG0563 Adk Adenylate kinase a 95.5 0.021 4.7E-07 54.8 5.2 23 178-200 2-24 (178)
314 cd01121 Sms Sms (bacterial rad 95.5 0.036 7.9E-07 60.1 7.6 83 176-267 82-167 (372)
315 PRK04301 radA DNA repair and r 95.5 0.069 1.5E-06 57.2 9.7 57 175-233 101-161 (317)
316 PRK09270 nucleoside triphospha 95.5 0.019 4E-07 58.4 5.1 27 174-200 31-57 (229)
317 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.019 4.1E-07 54.5 4.8 118 176-302 25-145 (157)
318 PRK10867 signal recognition pa 95.5 0.056 1.2E-06 59.6 9.0 26 175-200 99-124 (433)
319 PRK13539 cytochrome c biogenes 95.5 0.037 8E-07 55.2 7.1 26 175-200 27-52 (207)
320 PF00560 LRR_1: Leucine Rich R 95.4 0.0051 1.1E-07 36.1 0.5 17 588-604 2-18 (22)
321 PRK14722 flhF flagellar biosyn 95.4 0.056 1.2E-06 58.2 8.7 88 176-268 137-225 (374)
322 PRK05342 clpX ATP-dependent pr 95.4 0.038 8.3E-07 60.7 7.7 47 154-200 70-132 (412)
323 PF13238 AAA_18: AAA domain; P 95.4 0.012 2.5E-07 53.7 3.1 22 179-200 1-22 (129)
324 PLN03187 meiotic recombination 95.4 0.058 1.2E-06 57.6 8.6 60 175-235 125-187 (344)
325 TIGR00959 ffh signal recogniti 95.4 0.06 1.3E-06 59.3 9.0 26 175-200 98-123 (428)
326 PRK12678 transcription termina 95.4 0.032 6.9E-07 62.1 6.7 98 168-267 407-512 (672)
327 PF07726 AAA_3: ATPase family 95.4 0.012 2.6E-07 52.1 2.8 28 179-209 2-29 (131)
328 PF12775 AAA_7: P-loop contain 95.4 0.024 5.2E-07 58.8 5.6 88 165-268 23-110 (272)
329 TIGR01425 SRP54_euk signal rec 95.4 0.81 1.7E-05 50.3 17.3 26 175-200 99-124 (429)
330 TIGR02858 spore_III_AA stage I 95.4 0.1 2.2E-06 53.8 10.0 127 165-300 99-232 (270)
331 TIGR03499 FlhF flagellar biosy 95.4 0.064 1.4E-06 56.1 8.7 88 175-267 193-281 (282)
332 TIGR03877 thermo_KaiC_1 KaiC d 95.4 0.1 2.2E-06 53.3 10.0 49 175-228 20-68 (237)
333 TIGR02239 recomb_RAD51 DNA rep 95.4 0.094 2E-06 55.7 10.0 59 175-234 95-156 (316)
334 cd02019 NK Nucleoside/nucleoti 95.3 0.014 3E-07 46.3 2.9 23 178-200 1-23 (69)
335 TIGR00708 cobA cob(I)alamin ad 95.3 0.057 1.2E-06 51.1 7.4 117 176-297 5-140 (173)
336 PRK08972 fliI flagellum-specif 95.3 0.043 9.3E-07 59.9 7.4 88 175-267 161-261 (444)
337 KOG0735 AAA+-type ATPase [Post 95.3 0.39 8.4E-06 54.5 14.6 151 177-355 702-872 (952)
338 PRK05201 hslU ATP-dependent pr 95.3 0.04 8.7E-07 59.5 7.0 76 154-232 14-107 (443)
339 COG4088 Predicted nucleotide k 95.3 0.017 3.6E-07 54.9 3.5 24 177-200 2-25 (261)
340 PRK06067 flagellar accessory p 95.3 0.081 1.8E-06 54.0 9.0 88 175-268 24-130 (234)
341 PF06309 Torsin: Torsin; Inte 95.2 0.071 1.5E-06 47.1 7.1 45 156-200 26-77 (127)
342 PRK11889 flhF flagellar biosyn 95.2 0.097 2.1E-06 56.0 9.4 87 175-267 240-329 (436)
343 PRK08233 hypothetical protein; 95.2 0.016 3.6E-07 56.4 3.6 25 176-200 3-27 (182)
344 PRK05480 uridine/cytidine kina 95.2 0.017 3.7E-07 57.7 3.8 27 174-200 4-30 (209)
345 COG1126 GlnQ ABC-type polar am 95.2 0.081 1.8E-06 51.1 7.9 55 248-302 144-201 (240)
346 TIGR00150 HI0065_YjeE ATPase, 95.2 0.034 7.3E-07 50.2 5.2 39 162-200 6-46 (133)
347 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.038 8.3E-07 51.4 5.8 104 175-301 25-131 (144)
348 PF13671 AAA_33: AAA domain; P 95.2 0.017 3.6E-07 53.8 3.4 23 178-200 1-23 (143)
349 KOG0652 26S proteasome regulat 95.2 0.49 1.1E-05 46.7 13.2 52 149-200 163-229 (424)
350 PF13306 LRR_5: Leucine rich r 95.2 0.057 1.2E-06 49.0 6.9 102 533-642 8-111 (129)
351 TIGR00554 panK_bact pantothena 95.2 0.12 2.6E-06 53.9 9.7 27 174-200 60-86 (290)
352 COG1121 ZnuC ABC-type Mn/Zn tr 95.1 0.083 1.8E-06 53.2 8.2 122 176-300 30-202 (254)
353 PRK05986 cob(I)alamin adenolsy 95.1 0.081 1.7E-06 50.9 7.8 118 175-297 21-158 (191)
354 cd03217 ABC_FeS_Assembly ABC-t 95.1 0.044 9.6E-07 54.3 6.4 25 175-199 25-49 (200)
355 PF07728 AAA_5: AAA domain (dy 95.1 0.046 9.9E-07 50.6 6.0 42 179-226 2-43 (139)
356 cd03229 ABC_Class3 This class 95.1 0.029 6.4E-07 54.4 4.8 26 175-200 25-50 (178)
357 PRK12726 flagellar biosynthesi 95.1 0.24 5.2E-06 53.0 11.8 88 175-267 205-294 (407)
358 PF00910 RNA_helicase: RNA hel 95.1 0.015 3.3E-07 50.8 2.5 22 179-200 1-22 (107)
359 TIGR03881 KaiC_arch_4 KaiC dom 95.0 0.13 2.7E-06 52.4 9.5 47 175-226 19-65 (229)
360 PRK12723 flagellar biosynthesi 95.0 0.12 2.7E-06 56.1 9.8 88 175-267 173-263 (388)
361 PRK07132 DNA polymerase III su 95.0 0.87 1.9E-05 47.8 15.8 167 164-358 5-184 (299)
362 PRK06002 fliI flagellum-specif 95.0 0.082 1.8E-06 58.1 8.4 89 175-267 164-263 (450)
363 COG0488 Uup ATPase components 95.0 0.23 4.9E-06 56.4 12.2 135 175-313 347-511 (530)
364 PRK13765 ATP-dependent proteas 95.0 0.045 9.8E-07 63.4 6.7 75 155-234 31-105 (637)
365 cd01135 V_A-ATPase_B V/A-type 95.0 0.11 2.3E-06 53.2 8.6 94 175-268 68-176 (276)
366 COG1066 Sms Predicted ATP-depe 95.0 0.097 2.1E-06 55.5 8.4 82 176-267 93-177 (456)
367 TIGR00235 udk uridine kinase. 95.0 0.022 4.7E-07 56.9 3.7 26 175-200 5-30 (207)
368 cd02025 PanK Pantothenate kina 95.0 0.1 2.2E-06 52.4 8.4 23 178-200 1-23 (220)
369 COG0194 Gmk Guanylate kinase [ 94.9 0.12 2.6E-06 48.8 8.2 25 176-200 4-28 (191)
370 PF01583 APS_kinase: Adenylyls 94.9 0.026 5.6E-07 52.5 3.7 35 177-214 3-37 (156)
371 cd01124 KaiC KaiC is a circadi 94.9 0.094 2E-06 51.3 8.0 45 178-227 1-45 (187)
372 TIGR03575 selen_PSTK_euk L-ser 94.9 0.12 2.6E-06 54.9 9.2 22 179-200 2-23 (340)
373 TIGR01360 aden_kin_iso1 adenyl 94.9 0.023 5E-07 55.7 3.7 26 175-200 2-27 (188)
374 COG0468 RecA RecA/RadA recombi 94.9 0.12 2.7E-06 53.1 8.9 89 175-267 59-150 (279)
375 PF10236 DAP3: Mitochondrial r 94.9 0.6 1.3E-05 49.6 14.4 49 308-356 258-306 (309)
376 PRK03839 putative kinase; Prov 94.9 0.022 4.7E-07 55.5 3.3 23 178-200 2-24 (180)
377 cd03215 ABC_Carb_Monos_II This 94.9 0.033 7.2E-07 54.3 4.6 26 175-200 25-50 (182)
378 KOG1051 Chaperone HSP104 and r 94.9 0.087 1.9E-06 62.3 8.6 101 155-269 562-671 (898)
379 COG4618 ArpD ABC-type protease 94.8 0.12 2.5E-06 56.4 8.8 24 176-199 362-385 (580)
380 TIGR02236 recomb_radA DNA repa 94.8 0.14 3.1E-06 54.7 9.7 59 175-234 94-155 (310)
381 TIGR00064 ftsY signal recognit 94.8 0.14 3.1E-06 53.1 9.3 39 175-216 71-109 (272)
382 PRK08533 flagellar accessory p 94.8 0.18 3.8E-06 51.1 9.8 49 175-228 23-71 (230)
383 PTZ00088 adenylate kinase 1; P 94.8 0.028 6E-07 56.6 3.9 23 178-200 8-30 (229)
384 PF13481 AAA_25: AAA domain; P 94.8 0.11 2.4E-06 51.1 8.2 51 177-229 33-90 (193)
385 KOG3864 Uncharacterized conser 94.8 0.0027 5.8E-08 60.1 -3.1 65 720-788 121-187 (221)
386 PF00154 RecA: recA bacterial 94.8 0.16 3.4E-06 53.4 9.5 88 175-270 52-143 (322)
387 PRK10463 hydrogenase nickel in 94.7 0.11 2.4E-06 53.6 8.1 34 167-200 95-128 (290)
388 PRK12597 F0F1 ATP synthase sub 94.7 0.084 1.8E-06 58.4 7.5 91 175-267 142-246 (461)
389 cd03213 ABCG_EPDR ABCG transpo 94.7 0.082 1.8E-06 52.1 6.9 26 175-200 34-59 (194)
390 PRK14974 cell division protein 94.7 0.22 4.8E-06 53.1 10.4 89 175-268 139-232 (336)
391 COG1428 Deoxynucleoside kinase 94.6 0.028 6.2E-07 54.0 3.3 49 176-230 4-52 (216)
392 PRK13543 cytochrome c biogenes 94.6 0.11 2.4E-06 52.1 7.9 26 175-200 36-61 (214)
393 KOG0729 26S proteasome regulat 94.6 0.26 5.6E-06 48.7 9.8 89 156-268 178-280 (435)
394 PRK06217 hypothetical protein; 94.6 0.053 1.2E-06 52.8 5.4 24 177-200 2-25 (183)
395 PRK04040 adenylate kinase; Pro 94.6 0.029 6.3E-07 54.7 3.5 25 176-200 2-26 (188)
396 PRK00625 shikimate kinase; Pro 94.6 0.029 6.3E-07 53.7 3.4 23 178-200 2-24 (173)
397 PRK04328 hypothetical protein; 94.6 0.11 2.4E-06 53.3 7.9 41 175-218 22-62 (249)
398 KOG0927 Predicted transporter 94.6 1 2.3E-05 49.6 15.2 123 174-299 414-568 (614)
399 PLN03186 DNA repair protein RA 94.6 0.18 3.9E-06 54.0 9.5 59 175-234 122-183 (342)
400 COG3640 CooC CO dehydrogenase 94.6 0.061 1.3E-06 52.5 5.4 42 178-221 2-43 (255)
401 PF07724 AAA_2: AAA domain (Cd 94.6 0.027 5.9E-07 53.8 3.1 42 176-220 3-45 (171)
402 PRK09519 recA DNA recombinatio 94.6 0.098 2.1E-06 61.5 8.0 86 175-268 59-148 (790)
403 PRK08927 fliI flagellum-specif 94.5 0.11 2.3E-06 57.1 7.9 89 174-267 156-257 (442)
404 cd03281 ABC_MSH5_euk MutS5 hom 94.5 0.033 7.1E-07 55.6 3.7 23 176-198 29-51 (213)
405 PRK08149 ATP synthase SpaL; Va 94.5 0.14 3.1E-06 56.1 8.8 88 175-267 150-250 (428)
406 PF08433 KTI12: Chromatin asso 94.5 0.056 1.2E-06 55.8 5.4 24 177-200 2-25 (270)
407 KOG2170 ATPase of the AAA+ sup 94.5 0.11 2.4E-06 52.7 7.1 46 156-201 83-135 (344)
408 PRK11823 DNA repair protein Ra 94.5 0.16 3.4E-06 57.0 9.3 84 175-267 79-165 (446)
409 PRK05922 type III secretion sy 94.5 0.11 2.5E-06 56.8 7.9 90 174-268 155-257 (434)
410 PF00158 Sigma54_activat: Sigm 94.5 0.053 1.1E-06 51.7 4.8 44 157-200 1-46 (168)
411 cd00071 GMPK Guanosine monopho 94.5 0.064 1.4E-06 49.3 5.2 23 178-200 1-23 (137)
412 cd02027 APSK Adenosine 5'-phos 94.5 0.14 3.1E-06 47.9 7.6 23 178-200 1-23 (149)
413 TIGR00764 lon_rel lon-related 94.5 0.12 2.5E-06 60.3 8.4 75 155-234 18-92 (608)
414 PTZ00035 Rad51 protein; Provis 94.4 0.39 8.5E-06 51.5 11.8 91 175-267 117-222 (337)
415 COG0396 sufC Cysteine desulfur 94.4 0.17 3.6E-06 49.5 7.9 66 245-310 149-217 (251)
416 PRK05439 pantothenate kinase; 94.4 0.27 5.9E-06 51.6 10.3 27 174-200 84-110 (311)
417 cd03369 ABCC_NFT1 Domain 2 of 94.4 0.18 4E-06 50.2 8.8 26 175-200 33-58 (207)
418 TIGR01359 UMP_CMP_kin_fam UMP- 94.4 0.028 6E-07 54.9 2.8 23 178-200 1-23 (183)
419 PF03205 MobB: Molybdopterin g 94.4 0.053 1.1E-06 49.9 4.4 39 177-217 1-39 (140)
420 TIGR02030 BchI-ChlI magnesium 94.4 0.062 1.3E-06 57.4 5.5 45 156-200 5-49 (337)
421 PRK10875 recD exonuclease V su 94.3 0.14 3.1E-06 59.2 8.8 55 176-230 167-221 (615)
422 PF06745 KaiC: KaiC; InterPro 94.3 0.056 1.2E-06 54.8 5.0 88 175-267 18-124 (226)
423 PRK00131 aroK shikimate kinase 94.3 0.039 8.4E-07 53.4 3.6 25 176-200 4-28 (175)
424 PRK06851 hypothetical protein; 94.3 1 2.2E-05 48.5 14.4 54 159-218 201-254 (367)
425 TIGR03498 FliI_clade3 flagella 94.3 0.11 2.4E-06 56.9 7.2 89 175-267 139-239 (418)
426 PRK09280 F0F1 ATP synthase sub 94.2 0.15 3.3E-06 56.2 8.3 91 175-267 143-247 (463)
427 COG0541 Ffh Signal recognition 94.2 2.8 6E-05 45.4 17.1 57 175-235 99-157 (451)
428 cd02024 NRK1 Nicotinamide ribo 94.2 0.033 7.2E-07 53.9 2.8 23 178-200 1-23 (187)
429 PRK12724 flagellar biosynthesi 94.2 0.14 3.1E-06 55.6 7.8 25 176-200 223-247 (432)
430 cd01136 ATPase_flagellum-secre 94.2 0.21 4.6E-06 52.8 9.0 88 175-267 68-168 (326)
431 PF13245 AAA_19: Part of AAA d 94.2 0.11 2.3E-06 42.0 5.2 24 175-198 9-32 (76)
432 PRK06936 type III secretion sy 94.2 0.14 3E-06 56.2 7.8 89 174-267 160-261 (439)
433 COG1703 ArgK Putative periplas 94.2 0.076 1.7E-06 53.9 5.3 59 165-224 38-98 (323)
434 TIGR01420 pilT_fam pilus retra 94.1 0.055 1.2E-06 58.5 4.6 111 175-298 121-231 (343)
435 PRK05973 replicative DNA helic 94.1 0.26 5.6E-06 49.6 9.0 50 175-229 63-112 (237)
436 PF00625 Guanylate_kin: Guanyl 94.1 0.074 1.6E-06 51.8 5.2 39 176-217 2-40 (183)
437 CHL00081 chlI Mg-protoporyphyr 94.1 0.069 1.5E-06 57.0 5.2 46 155-200 17-62 (350)
438 PF05970 PIF1: PIF1-like helic 94.1 0.087 1.9E-06 57.5 6.2 38 163-200 9-46 (364)
439 cd02023 UMPK Uridine monophosp 94.1 0.034 7.5E-07 55.0 2.8 23 178-200 1-23 (198)
440 TIGR01069 mutS2 MutS2 family p 94.1 0.028 6.1E-07 67.0 2.4 115 257-382 401-523 (771)
441 TIGR03305 alt_F1F0_F1_bet alte 94.1 0.13 2.8E-06 56.6 7.3 91 175-267 137-241 (449)
442 PF13306 LRR_5: Leucine rich r 94.1 0.16 3.5E-06 46.0 7.0 116 513-637 10-129 (129)
443 TIGR02322 phosphon_PhnN phosph 94.0 0.044 9.6E-07 53.2 3.4 24 177-200 2-25 (179)
444 cd02020 CMPK Cytidine monophos 94.0 0.038 8.3E-07 51.6 2.8 23 178-200 1-23 (147)
445 KOG3347 Predicted nucleotide k 94.0 0.075 1.6E-06 47.8 4.3 104 176-303 7-110 (176)
446 PRK13407 bchI magnesium chelat 94.0 0.066 1.4E-06 57.0 4.8 46 155-200 8-53 (334)
447 cd02028 UMPK_like Uridine mono 94.0 0.054 1.2E-06 52.5 3.8 23 178-200 1-23 (179)
448 PRK10751 molybdopterin-guanine 94.0 0.054 1.2E-06 51.5 3.7 26 175-200 5-30 (173)
449 PF03308 ArgK: ArgK protein; 94.0 0.083 1.8E-06 52.9 5.1 57 163-220 14-72 (266)
450 PRK14721 flhF flagellar biosyn 93.9 0.3 6.4E-06 53.6 9.8 87 176-267 191-278 (420)
451 cd01132 F1_ATPase_alpha F1 ATP 93.9 0.2 4.3E-06 51.3 7.8 89 175-268 68-171 (274)
452 PRK13949 shikimate kinase; Pro 93.9 0.052 1.1E-06 52.0 3.4 24 177-200 2-25 (169)
453 PRK05703 flhF flagellar biosyn 93.9 0.18 3.9E-06 55.9 8.1 87 176-267 221-308 (424)
454 cd03250 ABCC_MRP_domain1 Domai 93.9 0.25 5.3E-06 49.2 8.5 26 175-200 30-55 (204)
455 PRK13947 shikimate kinase; Pro 93.9 0.05 1.1E-06 52.4 3.3 23 178-200 3-25 (171)
456 COG0467 RAD55 RecA-superfamily 93.8 0.074 1.6E-06 55.2 4.7 52 174-230 21-72 (260)
457 KOG1532 GTPase XAB1, interacts 93.8 0.063 1.4E-06 53.2 3.8 26 175-200 18-43 (366)
458 TIGR00416 sms DNA repair prote 93.8 0.2 4.3E-06 56.1 8.3 40 175-217 93-132 (454)
459 PF13504 LRR_7: Leucine rich r 93.8 0.04 8.6E-07 29.9 1.4 16 587-602 2-17 (17)
460 COG1936 Predicted nucleotide k 93.7 0.048 1E-06 50.6 2.8 20 178-197 2-21 (180)
461 PF13086 AAA_11: AAA domain; P 93.7 0.12 2.6E-06 52.7 6.1 36 163-200 6-41 (236)
462 cd02021 GntK Gluconate kinase 93.7 0.046 1E-06 51.3 2.8 23 178-200 1-23 (150)
463 cd00227 CPT Chloramphenicol (C 93.7 0.054 1.2E-06 52.3 3.3 24 177-200 3-26 (175)
464 COG0714 MoxR-like ATPases [Gen 93.7 0.16 3.5E-06 54.8 7.2 63 156-226 25-87 (329)
465 smart00072 GuKc Guanylate kina 93.7 0.24 5.2E-06 48.3 7.8 25 176-200 2-26 (184)
466 PF03193 DUF258: Protein of un 93.7 0.091 2E-06 49.1 4.5 35 163-200 25-59 (161)
467 COG1124 DppF ABC-type dipeptid 93.7 0.081 1.7E-06 52.1 4.3 26 174-199 31-56 (252)
468 TIGR03878 thermo_KaiC_2 KaiC d 93.7 0.32 7E-06 50.3 9.1 40 175-217 35-74 (259)
469 PRK14530 adenylate kinase; Pro 93.7 0.055 1.2E-06 54.3 3.3 24 177-200 4-27 (215)
470 KOG1970 Checkpoint RAD17-RFC c 93.6 0.26 5.7E-06 54.2 8.4 47 162-213 89-142 (634)
471 PRK05688 fliI flagellum-specif 93.6 0.2 4.3E-06 55.2 7.8 89 175-268 167-268 (451)
472 COG0003 ArsA Predicted ATPase 93.6 0.1 2.2E-06 55.0 5.3 49 176-227 2-50 (322)
473 PRK00889 adenylylsulfate kinas 93.6 0.066 1.4E-06 51.8 3.8 25 176-200 4-28 (175)
474 COG2274 SunT ABC-type bacterio 93.6 0.21 4.5E-06 58.9 8.3 27 174-200 497-523 (709)
475 KOG0727 26S proteasome regulat 93.6 0.11 2.3E-06 50.9 4.8 45 156-200 156-213 (408)
476 PF00560 LRR_1: Leucine Rich R 93.5 0.033 7.1E-07 32.6 0.9 22 563-585 1-22 (22)
477 cd01672 TMPK Thymidine monopho 93.5 0.14 3.1E-06 50.6 6.0 23 178-200 2-24 (200)
478 CHL00206 ycf2 Ycf2; Provisiona 93.5 0.44 9.5E-06 60.6 10.9 27 174-200 1628-1654(2281)
479 PRK09099 type III secretion sy 93.4 0.27 5.8E-06 54.3 8.4 90 174-267 161-262 (441)
480 PRK06995 flhF flagellar biosyn 93.4 0.3 6.5E-06 54.5 8.8 25 176-200 256-280 (484)
481 TIGR01039 atpD ATP synthase, F 93.4 0.27 5.9E-06 54.1 8.3 91 175-267 142-246 (461)
482 cd01130 VirB11-like_ATPase Typ 93.4 0.063 1.4E-06 52.4 3.2 36 164-200 14-49 (186)
483 PF08477 Miro: Miro-like prote 93.4 0.064 1.4E-06 47.9 3.1 22 179-200 2-23 (119)
484 PRK05800 cobU adenosylcobinami 93.4 0.26 5.6E-06 47.1 7.3 83 177-267 2-85 (170)
485 PF03266 NTPase_1: NTPase; In 93.4 0.062 1.3E-06 51.2 3.0 22 179-200 2-23 (168)
486 cd00544 CobU Adenosylcobinamid 93.4 0.39 8.4E-06 45.8 8.5 80 178-267 1-82 (169)
487 PRK15453 phosphoribulokinase; 93.4 0.36 7.8E-06 49.5 8.6 26 175-200 4-29 (290)
488 TIGR03263 guanyl_kin guanylate 93.4 0.06 1.3E-06 52.3 3.1 24 177-200 2-25 (180)
489 cd00464 SK Shikimate kinase (S 93.4 0.063 1.4E-06 50.6 3.1 22 179-200 2-23 (154)
490 PF02374 ArsA_ATPase: Anion-tr 93.4 0.082 1.8E-06 55.9 4.2 46 177-225 2-47 (305)
491 TIGR00382 clpX endopeptidase C 93.4 0.15 3.2E-06 55.9 6.2 47 154-200 76-140 (413)
492 PF08298 AAA_PrkA: PrkA AAA do 93.3 0.14 2.9E-06 54.0 5.5 46 155-200 61-112 (358)
493 KOG0927 Predicted transporter 93.3 0.15 3.3E-06 55.9 6.1 34 175-208 100-133 (614)
494 COG1131 CcmA ABC-type multidru 93.3 0.33 7.2E-06 51.1 8.6 26 175-200 30-55 (293)
495 PRK12339 2-phosphoglycerate ki 93.3 0.079 1.7E-06 52.0 3.7 25 176-200 3-27 (197)
496 COG4133 CcmA ABC-type transpor 93.3 0.32 7E-06 45.9 7.4 25 176-200 28-52 (209)
497 TIGR00073 hypB hydrogenase acc 93.3 0.088 1.9E-06 52.5 4.1 32 169-200 15-46 (207)
498 TIGR02868 CydC thiol reductant 93.3 0.25 5.3E-06 57.5 8.4 27 174-200 359-385 (529)
499 PRK05057 aroK shikimate kinase 93.3 0.078 1.7E-06 51.0 3.5 25 176-200 4-28 (172)
500 cd00820 PEPCK_HprK Phosphoenol 93.2 0.075 1.6E-06 45.8 3.0 23 175-197 14-36 (107)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-100 Score=886.20 Aligned_cols=841 Identities=40% Similarity=0.671 Sum_probs=702.1
Q ss_pred hhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHhHhhhHH
Q 002704 16 FNRCLDCFLGKAAYISNLQDNLVALDTELRKLIAAKNDLMRRVNDAERQQMRRLDQVHVWVSRVETVETEAGAFIGDGTQ 95 (890)
Q Consensus 16 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~Wl~~v~~~~~~~ed~id~~~~ 95 (890)
++++++.+.+++..+.++++++..+++++..|+.++.+ |++++. ....+..|.+.+++++|+++|+++.|..
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999655 444332 2456889999999999999999999865
Q ss_pred HHhh----------------hhcCCCCCcchhhhcchHHHHHHHHHHHHHHHcCCCceeecc-cCCCCcccccCCCCcc-
Q 002704 96 EIEK----------------LCLGGYCSKNCKSSYKFGKQVARKLRDIKTLMGEGVFEVVAD-KVPEPAVDERPTEPTM- 157 (890)
Q Consensus 96 ~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~- 157 (890)
.... -|..++|.+.....+.+++++...+++++.+..++.|..++. ..+......+|..+..
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 4321 233355566667778888999999999999988887766654 2222333334443333
Q ss_pred cchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccc
Q 002704 158 VGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNE 237 (890)
Q Consensus 158 ~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 237 (890)
||.+..++++++.|.+++..+++|+||||+||||||++++|+...++.+||.++||+||+.++...++++|++.++....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 89999999999999888879999999999999999999999984489999999999999999999999999999988766
Q ss_pred cccccCHHHHHHHHHHHhcCCeEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHHhc-ccCCceeecCCCCh
Q 002704 238 TWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVCGL-MEAHKKFKVQCLSG 316 (890)
Q Consensus 238 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~-~~~~~~~~l~~L~~ 316 (890)
.+.....++++..+.+.|.++||+|||||||+..+|+.++.++|... +||||++|||++.||.. +++...++++.|++
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~-~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRE-NGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCcc-CCeEEEEEeccHhhhhccccCCccccccccCc
Confidence 65666668999999999999999999999999999999999999987 89999999999999999 88899999999999
Q ss_pred hhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHhccCCChhHHHHHHHHHhcc-cCCCCCCCcchhc
Q 002704 317 NDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMACKKTPEEWSYAIQVLRTS-SSQFPGLGNEVYP 395 (890)
Q Consensus 317 ~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~~~~~~ 395 (890)
+|||+||.+.++......++.++++|++|+++|+|+|||++++|+.|+.|++..+|+++.+.+.+. ..+.+++.+.+++
T Consensus 320 ~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~ 399 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILP 399 (889)
T ss_pred cccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHH
Confidence 999999999999887677777999999999999999999999999999999999999999999888 5566677789999
Q ss_pred hHHhhccCCCCchhhhHHhhhccCCCCccccHHHHHHHHhhCCCccCc-cccchhhhHHHHHHHHHHhccccccC----C
Q 002704 396 LLKFSYDNLPNDTIRSCLLYCCLYPEDCCISKENLVDCWIGEGLLNGS-VTLGSHEQGYHIVGILVQACLLEEVD----E 470 (890)
Q Consensus 396 ~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~-~~~~~~~~~~~~~~~L~~~~ll~~~~----~ 470 (890)
+|++||++||+ ++|.||+|||+||+||.|+++.|+.+|+||||+++. .+...++.|+.|+.+|++++|++..+ .
T Consensus 400 iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 400 ILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred hhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 99999999996 599999999999999999999999999999999986 57888999999999999999999874 3
Q ss_pred CcEEehHHHHHHHHHHHhhhhcccccEEEEcCCCcccCCccccccceEEEEccccccccccCCCCCCcceEEEeccCCC-
Q 002704 471 DEVKMHDVIRDMALWLACDAEKEKENYLVYAGAGFREAPDVIEWEKLRRLSLMENQIENLSEVPTCPHLLTLFLNNDGL- 549 (890)
Q Consensus 471 ~~~~mHdlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~L~~~~~- 549 (890)
.+|+|||+|||+|.+++++.+..++++++..+.+..+.+....|...|++++.+|.+..++.-..++.|++|.+.+|..
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~ 558 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDW 558 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchh
Confidence 7899999999999999998887778888777777777888889999999999999998888888899999999998863
Q ss_pred ccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEeccCCCccccchHHhcCCcCCEeeccCCCCccccChhh
Q 002704 550 LRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTSLISEIPEELKALVNLKCLNLENTGLLLKIPLQL 629 (890)
Q Consensus 550 ~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~ 629 (890)
...++..||..|+.|++|||++|..+..+|++|++|.|||||+++++.|+.+|..+++|.+|.+|++.++..+..+| ++
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-ch
Confidence 56788888999999999999998899999999999999999999999999999999999999999999987666664 55
Q ss_pred hcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCCCceEEEEecChhhhHhhhhhcccccccceeeeccc
Q 002704 630 ISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDF 709 (890)
Q Consensus 630 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 709 (890)
...|++|++|.+....... +...+.++..+++|+.+.++..+...+..+.....+.+..+.+.+..+
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~-------------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~ 704 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSN-------------DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC 704 (889)
T ss_pred hhhcccccEEEeecccccc-------------chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc
Confidence 6779999999998654211 556788899999999999877666444444444444445555554332
Q ss_pred CCCceecccCcccccCccEEEeecCCCcceEEecccCcccccc-CCcccEEEEecCCCCCCCCcccccCCCCeEEEecCc
Q 002704 710 KGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQHFG-FHSLQSFEVNFCSKLKDLTLLVLIPNLKYIAVTDCK 788 (890)
Q Consensus 710 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~-l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~ 788 (890)
.. .....++..+.+|+.|.|.+|...+ ....+........ |+++..+.+.+|.....+.|....|+|+.|.+.+|.
T Consensus 705 ~~--~~~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 705 SK--RTLISSLGSLGNLEELSILDCGISE-IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred cc--ceeecccccccCcceEEEEcCCCch-hhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence 22 1222357788999999999995433 2222322222223 778999999999999999998899999999999999
Q ss_pred cchhhhccccccC---C-CCcCccccee-ccccccccccccCCCCCCCCccEEeecCcccCCCCCCCCCcccc---cceE
Q 002704 789 AMEEIISVGEFAG---N-PNAFAKLQYL-RIGNLPNLKSIYLKPLPFPCLKKLTVSDCYELKKLPLDSNSAKE---RKIV 860 (890)
Q Consensus 789 ~l~~i~~~~~~~~---~-~~~f~~L~~L-~l~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~Lp~~~~~~~~---~~~~ 860 (890)
.++++++..+... . ...|+++..+ .+.+.+.+..+......+++|+.+.+..||+|..+|........ ..+.
T Consensus 782 ~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~ 861 (889)
T KOG4658|consen 782 LLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLK 861 (889)
T ss_pred ccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceecccccee
Confidence 9998876333111 1 2567788888 58888888888877778888999999999999999997654322 2344
Q ss_pred EEcchhhhcccccCchhhhhhhc
Q 002704 861 IRGAANWWRNLQWEDEATQNAFL 883 (890)
Q Consensus 861 i~~~~~~~~~l~w~~~~~~~~~~ 883 (890)
..-+.+|...+.|++++++..+.
T Consensus 862 ~~~~~~~~~~v~~~~~~~~~~~~ 884 (889)
T KOG4658|consen 862 EYPDGEWLEGVYWEDELTKLRFW 884 (889)
T ss_pred ecCCccceeeEEehhhhhhhhcc
Confidence 44556778999999999987763
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.8e-62 Score=606.09 Aligned_cols=626 Identities=21% Similarity=0.304 Sum_probs=448.5
Q ss_pred CcccchHHHHHHHHHHhc--cCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEe---CCC-----------
Q 002704 155 PTMVGLQSQLEEVWRCLV--EEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVV---SKD----------- 218 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~----------- 218 (890)
+.+|||+.+++++..+|. .+++++|+||||||+||||||+++|+.. ...|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 468899999999999884 3678999999999999999999999987 678998888742 111
Q ss_pred CC-HHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCH
Q 002704 219 LR-LESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSE 297 (890)
Q Consensus 219 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~ 297 (890)
++ ...+++.++..+...... .... ...+++.++++|+||||||||+...|+.+..... +.+.||+||||||+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~-~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~-~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDI-KIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ-WFGSGSRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCc-ccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc-cCCCCcEEEEEeCcH
Confidence 01 123444444443221110 1111 2456778999999999999999888888765443 334899999999999
Q ss_pred HHHhcccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHhccCCChhHHHHHHH
Q 002704 298 EVCGLMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMACKKTPEEWSYAIQ 377 (890)
Q Consensus 298 ~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~ 377 (890)
.++..++..++|+++.+++++||+||+++||.... .++++++++++|+++|+|+|||++++|++|+. ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 99988888899999999999999999999997643 24568899999999999999999999999997 68899999999
Q ss_pred HHhcccCCCCCCCcchhchHHhhccCCCCchhhhHHhhhccCCCCccccHHHHHHHHhhCCCccCccccchhhhHHHHHH
Q 002704 378 VLRTSSSQFPGLGNEVYPLLKFSYDNLPNDTIRSCLLYCCLYPEDCCISKENLVDCWIGEGLLNGSVTLGSHEQGYHIVG 457 (890)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~ 457 (890)
.++... +..+..+|++||+.|+++..|.||+++|+|+.++.++ .+..|.+.+.... +..++
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~ 473 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLK 473 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChH
Confidence 987643 2579999999999998745899999999999887654 4677877664432 12388
Q ss_pred HHHHhccccccCCCcEEehHHHHHHHHHHHhhhhc--ccccEEEEc---------CCC-------------cccC----C
Q 002704 458 ILVQACLLEEVDEDEVKMHDVIRDMALWLACDAEK--EKENYLVYA---------GAG-------------FREA----P 509 (890)
Q Consensus 458 ~L~~~~ll~~~~~~~~~mHdlv~~~~~~~~~~~~~--~~~~~~~~~---------~~~-------------~~~~----~ 509 (890)
.|+++||++.. ...+.|||++|+||+.+++++.. .+..++... ..+ ..+. .
T Consensus 474 ~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 474 NLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred HHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 99999999875 46799999999999999876431 111222110 000 0000 0
Q ss_pred ccccc-------------------------------cceEEEEccccccccccCCCCCCcceEEEeccCCCccccChhhh
Q 002704 510 DVIEW-------------------------------EKLRRLSLMENQIENLSEVPTCPHLLTLFLNNDGLLRIINSDFL 558 (890)
Q Consensus 510 ~~~~~-------------------------------~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~ 558 (890)
.+..+ .+++.|.+.++.+..+|....+.+|+.|++.+|.+ ..++.+ +
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l-~~L~~~-~ 630 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKL-EKLWDG-V 630 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccc-cccccc-c
Confidence 01112 24566666666666666655678999999998765 456665 6
Q ss_pred ccCCCCcEEEeecCCCCcccCccccCccCCCEEeccCC-CccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCc
Q 002704 559 QSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTS-LISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLH 637 (890)
Q Consensus 559 ~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~ 637 (890)
..+++|++|+|+++..+..+|. ++.+++|++|+|++| .+..+|..++++++|++|++++|..+..+|.. + ++++|+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~ 707 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLY 707 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCC
Confidence 8899999999997777888885 889999999999998 57799999999999999999999889999976 3 799999
Q ss_pred EeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCCCceEEEEecChhhhHhhhh------------------------
Q 002704 638 VLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKHLEVLSLTLGSSRALQSFLN------------------------ 693 (890)
Q Consensus 638 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------------------------ 693 (890)
+|++++|..... .+ ...++|+.|+++.+....++....
T Consensus 708 ~L~Lsgc~~L~~--~p----------------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 708 RLNLSGCSRLKS--FP----------------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred EEeCCCCCCccc--cc----------------cccCCcCeeecCCCccccccccccccccccccccccchhhcccccccc
Confidence 999998865321 00 012334444444433322221100
Q ss_pred ---hcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcceEEecccCccccccCCcccEEEEecCCCCCCC
Q 002704 694 ---SHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVNFCSKLKDL 770 (890)
Q Consensus 694 ---~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 770 (890)
.....++|+.|+++++......+. ++.++++|+.|+|++|..++.+|... .+++|+.|+|++|..+..+
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCccccc
Confidence 011123555566655544333321 25556666666666666666655432 2566666666666655555
Q ss_pred CcccccCCCCeEEEecCccchhhhccccccCCCCcCcccceeccccccccccccCCCCCCCCccEEeecCcccCCCCCCC
Q 002704 771 TLLVLIPNLKYIAVTDCKAMEEIISVGEFAGNPNAFAKLQYLRIGNLPNLKSIYLKPLPFPCLKKLTVSDCYELKKLPLD 850 (890)
Q Consensus 771 ~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~Lp~~ 850 (890)
|.+ .++|+.|+|+++ .++.+|. ....+++|+.|++.+|++|+.++.....+++|+.+++++|++|+.++..
T Consensus 842 p~~--~~nL~~L~Ls~n-~i~~iP~------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 842 PDI--STNISDLNLSRT-GIEEVPW------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred ccc--ccccCEeECCCC-CCccChH------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 432 356666666653 3444433 2367899999999999999999988888999999999999999987764
Q ss_pred C
Q 002704 851 S 851 (890)
Q Consensus 851 ~ 851 (890)
.
T Consensus 913 ~ 913 (1153)
T PLN03210 913 G 913 (1153)
T ss_pred C
Confidence 3
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.7e-44 Score=383.59 Aligned_cols=281 Identities=33% Similarity=0.611 Sum_probs=231.2
Q ss_pred hHHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccc
Q 002704 160 LQSQLEEVWRCLVE--EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNE 237 (890)
Q Consensus 160 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 237 (890)
||.++++|.++|.+ ++.++|+|+||||+||||||++++++. ..+.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 789999999999999999999999985 247899999999999999999999999999987754
Q ss_pred cc-cccCHHHHHHHHHHHhcCCeEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHHhcccC-CceeecCCCC
Q 002704 238 TW-KSRRIEQKALDIFRILRGKKFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVCGLMEA-HKKFKVQCLS 315 (890)
Q Consensus 238 ~~-~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l~~L~ 315 (890)
.. ...+.++....+.+.+.++++||||||||+...|+.+...++... .|++||||||+..++..++. ...|++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~-~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFS-SGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHH-SS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 33 456788899999999999999999999999999998888777665 79999999999998877664 6789999999
Q ss_pred hhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHhccCCChhHHHHHHHHHhcccCCCCCCCcchhc
Q 002704 316 GNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMACKKTPEEWSYAIQVLRTSSSQFPGLGNEVYP 395 (890)
Q Consensus 316 ~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 395 (890)
.++|++||.+.++......++.+++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.+.....+..+....++.
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999987652233445688999999999999999999999976667889999999888776544444578999
Q ss_pred hHHhhccCCCCchhhhHHhhhccCCCCccccHHHHHHHHhhCCCccCc
Q 002704 396 LLKFSYDNLPNDTIRSCLLYCCLYPEDCCISKENLVDCWIGEGLLNGS 443 (890)
Q Consensus 396 ~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~ 443 (890)
++.+||+.||++ +|.||+|||+||+++.|+++.++++|+++|||...
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999995 99999999999999999999999999999999764
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=4.3e-21 Score=238.50 Aligned_cols=289 Identities=22% Similarity=0.299 Sum_probs=206.0
Q ss_pred CcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEeccCC-CccccchHHhcCCcCCEee
Q 002704 537 PHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTS-LISEIPEELKALVNLKCLN 615 (890)
Q Consensus 537 ~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~l~~l~~L~~L~ 615 (890)
.+||.|.+.++.. ..+|.. | .+.+|++|+|+ ++.+..+|.++..+++|++|+|+++ .++.+|. ++.+++|++|+
T Consensus 589 ~~Lr~L~~~~~~l-~~lP~~-f-~~~~L~~L~L~-~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPL-RCMPSN-F-RPENLVKLQMQ-GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCC-CCCCCc-C-CccCCcEEECc-CccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 4699999997654 577776 3 57899999999 7788999999999999999999987 5778884 88999999999
Q ss_pred ccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCCCceEEEEecChhhhHhhhhhc
Q 002704 616 LENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKHLEVLSLTLGSSRALQSFLNSH 695 (890)
Q Consensus 616 l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 695 (890)
+++|..+..+|.. ++++++|+.|++++|..... .+.. .++++|+.|++++|.. +..+.
T Consensus 664 L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~---------------Lp~~-i~l~sL~~L~Lsgc~~--L~~~p--- 721 (1153)
T PLN03210 664 LSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEI---------------LPTG-INLKSLYRLNLSGCSR--LKSFP--- 721 (1153)
T ss_pred ecCCCCccccchh-hhccCCCCEEeCCCCCCcCc---------------cCCc-CCCCCCCEEeCCCCCC--ccccc---
Confidence 9999989999987 89999999999998865321 1111 1578899999887642 11111
Q ss_pred ccccccceeeecccCCCceecc---cC-------------------------cccccCccEEEeecCCCcceEEecccCc
Q 002704 696 MLRSCTRAMLLQDFKGSTMVDV---SG-------------------------LANLKQLKRLRISDCYELVELKIDYAGE 747 (890)
Q Consensus 696 ~~~~~L~~L~l~~~~~~~~~~~---~~-------------------------l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 747 (890)
....+|+.|++.++.-...... .. ...+++|+.|++++|+.+..+|..+.
T Consensus 722 ~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-- 799 (1153)
T PLN03210 722 DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-- 799 (1153)
T ss_pred cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh--
Confidence 1123666776665432111100 00 01124666667766666666554433
Q ss_pred cccccCCcccEEEEecCCCCCCCCcccccCCCCeEEEecCccchhhhccccccCCCCcCcccceeccccccccccccCCC
Q 002704 748 VQHFGFHSLQSFEVNFCSKLKDLTLLVLIPNLKYIAVTDCKAMEEIISVGEFAGNPNAFAKLQYLRIGNLPNLKSIYLKP 827 (890)
Q Consensus 748 ~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~L~~l~~~~ 827 (890)
.+++|+.|+|++|..++.+|....+++|+.|++++|+.++.++. ..++|+.|+|++ .+++.+|...
T Consensus 800 ----~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---------~~~nL~~L~Ls~-n~i~~iP~si 865 (1153)
T PLN03210 800 ----NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---------ISTNISDLNLSR-TGIEEVPWWI 865 (1153)
T ss_pred ----CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---------cccccCEeECCC-CCCccChHHH
Confidence 36777777777777777776655677777777777776665533 345677777776 4667777667
Q ss_pred CCCCCccEEeecCcccCCCCCCCCCc-ccccceEEEcchhhh
Q 002704 828 LPFPCLKKLTVSDCYELKKLPLDSNS-AKERKIVIRGAANWW 868 (890)
Q Consensus 828 ~~~~~L~~L~i~~C~~L~~Lp~~~~~-~~~~~~~i~~~~~~~ 868 (890)
..+++|+.|++++|++|+.+|..... ..+....+.+|+++.
T Consensus 866 ~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 77999999999999999999986543 345567788887664
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=4.1e-21 Score=239.20 Aligned_cols=303 Identities=22% Similarity=0.201 Sum_probs=178.4
Q ss_pred cccceEEEEccccccccccCCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEe
Q 002704 513 EWEKLRRLSLMENQIENLSEVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLD 592 (890)
Q Consensus 513 ~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~ 592 (890)
.++++++|++++|.+....+...+++|++|++++|.+...+|.. ++.+++|++|+|++|.....+|..++++++|++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 45667777777776654333455677777777777666566655 67777777777774444456777777777777777
Q ss_pred ccCCCcc-ccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcC
Q 002704 593 LSTSLIS-EIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLG 671 (890)
Q Consensus 593 L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 671 (890)
+++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. ...+..++.
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~---------------~~~p~~l~~ 258 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLT---------------GPIPSSLGN 258 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceec---------------cccChhHhC
Confidence 7777665 56777777777777777777655566665 677777777777776652 224456667
Q ss_pred CCCCceEEEEecChhh-hHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcceEEecccCcccc
Q 002704 672 LKHLEVLSLTLGSSRA-LQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQH 750 (890)
Q Consensus 672 l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 750 (890)
+++|+.|+++.+.... .+.. .....+|+.|+++++.-....+ ..+..+++|+.|++++|.-...+|..+.
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~~----- 329 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPS---IFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALT----- 329 (968)
T ss_pred CCCCCEEECcCCeeeccCchh---HhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcCChhHh-----
Confidence 7777777776654432 1111 1112366677776554322211 1245566777777776632223322222
Q ss_pred ccCCcccEEEEecCCCCCCCC-cccccCCCCeEEEecCccchhhhcccc------------------ccCCCCcCcccce
Q 002704 751 FGFHSLQSFEVNFCSKLKDLT-LLVLIPNLKYIAVTDCKAMEEIISVGE------------------FAGNPNAFAKLQY 811 (890)
Q Consensus 751 ~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~------------------~~~~~~~f~~L~~ 811 (890)
.+++|+.|++++|.....+| .++.+++|+.|++++|.....++..-. .......+++|+.
T Consensus 330 -~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~ 408 (968)
T PLN00113 330 -SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408 (968)
T ss_pred -cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence 36677777777764333343 356667777777766654333222000 0001134566666
Q ss_pred eccccccccccccCCCCCCCCccEEeecCcc
Q 002704 812 LRIGNLPNLKSIYLKPLPFPCLKKLTVSDCY 842 (890)
Q Consensus 812 L~l~~~~~L~~l~~~~~~~~~L~~L~i~~C~ 842 (890)
|.+.++.-...++.....+++|+.|++++|.
T Consensus 409 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred EECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 6666654333444444556777777776653
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=5.7e-21 Score=237.92 Aligned_cols=267 Identities=19% Similarity=0.168 Sum_probs=152.0
Q ss_pred ccccceEEEEcccccccc-cc-CCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCC
Q 002704 512 IEWEKLRRLSLMENQIEN-LS-EVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLE 589 (890)
Q Consensus 512 ~~~~~l~~L~l~~~~~~~-l~-~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~ 589 (890)
..++++++|++++|.+.. +| .+..+++|++|++++|.+...+|.. ++++++|++|+|++|.....+|..++++++|+
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 345678888888887753 33 2677888888888877777667766 67888888888885555556788888888888
Q ss_pred EEeccCCCcc-ccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCC-----CCCC---ccc-c
Q 002704 590 HLDLSTSLIS-EIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGL-----YPED---SVL-F 659 (890)
Q Consensus 590 ~L~L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~-----~~~~---~~~-~ 659 (890)
+|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+..... .... ... .
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 8888888776 67778888888888888888766667765 7788888888888776532100 0000 000 0
Q ss_pred CCCcccHHHhcCCCCCceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcce
Q 002704 660 GGGELLVEELLGLKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVE 739 (890)
Q Consensus 660 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 739 (890)
......+..+..+++|+.|+++.+...... .......++|+.|+++++......+ ..+..+++|+.|++++|.-...
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKI--PVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcC--ChhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEee
Confidence 001112333444555555555444332110 0001112355555555543322211 1244556666666666622122
Q ss_pred EEecccCccccccCCcccEEEEecCCCCCCCC-cccccCCCCeEEEecCcc
Q 002704 740 LKIDYAGEVQHFGFHSLQSFEVNFCSKLKDLT-LLVLIPNLKYIAVTDCKA 789 (890)
Q Consensus 740 l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~ 789 (890)
+|..+. .+++|+.|++++|+....+| .+..+++|+.|++++|..
T Consensus 372 ~p~~~~------~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 372 IPEGLC------SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred CChhHh------CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 222221 24455555555553222232 245566666666666553
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.5e-22 Score=211.61 Aligned_cols=324 Identities=23% Similarity=0.301 Sum_probs=231.3
Q ss_pred ccEEEEcCCCcccCCc-cccccceEEEEccccccccc-cCCCCCCcceEEEeccCCCcc-ccChhhhccCCCCcEEEeec
Q 002704 495 ENYLVYAGAGFREAPD-VIEWEKLRRLSLMENQIENL-SEVPTCPHLLTLFLNNDGLLR-IINSDFLQSMPSLKVLNLSR 571 (890)
Q Consensus 495 ~~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l-~~~~~~~~Lr~L~L~~~~~~~-~~~~~~~~~l~~L~~L~L~~ 571 (890)
-.|+..+..++.++|. ...+.++++|++.+|++..+ ..++.++.||++++..|+... .+|.+ +-.|..|.+||||
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLS- 111 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLS- 111 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecc-
Confidence 3577777777776664 45678899999999988665 347889999999999876643 57777 6789999999999
Q ss_pred CCCCcccCccccCccCCCEEeccCCCccccchH-HhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccC
Q 002704 572 YMGLLELPSGISKLVSLEHLDLSTSLISEIPEE-LKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCG 650 (890)
Q Consensus 572 ~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 650 (890)
.+.+.+.|..+.+-+++-.|+|++|+|..+|.. +-+|+-|-+|||++|. ++.+|+. +..|.+|++|.+++|+...
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~h-- 187 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLNH-- 187 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhhH--
Confidence 788899999999999999999999999999974 5689999999999995 8999998 8999999999999987732
Q ss_pred CCCCCccccCCCcccHHHhcCCCCCceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCcccccCccEEE
Q 002704 651 LYPEDSVLFGGGELLVEELLGLKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLR 730 (890)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 730 (890)
..+..|..++.|..|.+++..-+ +..++.+.....+|+.++++.+.-.... ..+-++++|+.|+
T Consensus 188 -------------fQLrQLPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~N~Lp~vP--ecly~l~~LrrLN 251 (1255)
T KOG0444|consen 188 -------------FQLRQLPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSENNLPIVP--ECLYKLRNLRRLN 251 (1255)
T ss_pred -------------HHHhcCccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccccCCCcch--HHHhhhhhhheec
Confidence 23445556666667766654321 2222222222336666676654332222 2356677888888
Q ss_pred eecCCCcceEEecccCccccccCCcccEEEEecCCCCCCCCc-ccccCCCCeEEEecCcc-chhhhc-------ccc---
Q 002704 731 ISDCYELVELKIDYAGEVQHFGFHSLQSFEVNFCSKLKDLTL-LVLIPNLKYIAVTDCKA-MEEIIS-------VGE--- 798 (890)
Q Consensus 731 l~~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~-l~~i~~-------~~~--- 798 (890)
+++| .++.+...... -.+|++|+|+.+ +++.+|. +..+++|+.|.+.+|.. .+.+|+ ...
T Consensus 252 LS~N-~iteL~~~~~~------W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 252 LSGN-KITELNMTEGE------WENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred cCcC-ceeeeeccHHH------Hhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence 8887 67766544332 467777777777 5776664 66777777776665442 222222 000
Q ss_pred ------ccC-CCCcCcccceeccccccccccccCCCCCCCCccEEeecCcccCCCCCC
Q 002704 799 ------FAG-NPNAFAKLQYLRIGNLPNLKSIYLKPLPFPCLKKLTVSDCYELKKLPL 849 (890)
Q Consensus 799 ------~~~-~~~~f~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~Lp~ 849 (890)
... ....+++|+.|.|+. ..|.++|....-+|.|+.|++...|+|..=|-
T Consensus 324 anN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 324 ANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 000 225678888888875 67888888888889999999999999986654
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=2.2e-19 Score=188.70 Aligned_cols=297 Identities=20% Similarity=0.245 Sum_probs=154.9
Q ss_pred cccceEEEEccccccccccCCCCC-CcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCc-cccCccCCCE
Q 002704 513 EWEKLRRLSLMENQIENLSEVPTC-PHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPS-GISKLVSLEH 590 (890)
Q Consensus 513 ~~~~l~~L~l~~~~~~~l~~~~~~-~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~ 590 (890)
.+++++.+++..|.+..+|.+... .+|+.|+|.+|.+.. +...-++.++.||+|||| -+.|..+|. ++..-.++++
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~s-v~se~L~~l~alrslDLS-rN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISS-VTSEELSALPALRSLDLS-RNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeecccccc-ccHHHHHhHhhhhhhhhh-hchhhcccCCCCCCCCCceE
Confidence 445666666766766666665544 347777777554433 333336667777777777 455555543 3444466777
Q ss_pred EeccCCCccccc-hHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHh
Q 002704 591 LDLSTSLISEIP-EELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEEL 669 (890)
Q Consensus 591 L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 669 (890)
|+|++|.|+.+- ..|..+.+|..|.|+.|+ +..+|...|.+|++|+.|++..|.+.. .....+
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iri---------------ve~ltF 241 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRI---------------VEGLTF 241 (873)
T ss_pred EeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceee---------------ehhhhh
Confidence 777777777553 246666677777777764 566776666667777777776665521 112233
Q ss_pred cCCCCCceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcceEEecccCccc
Q 002704 670 LGLKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQ 749 (890)
Q Consensus 670 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 749 (890)
..|+.|+.|.+..+++..+..-... .+..++.|+|..+.- ....-+++.+++.|+.|++++| .+..+..+...
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~Fy--~l~kme~l~L~~N~l-~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~Ws--- 314 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGAFY--GLEKMEHLNLETNRL-QAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWS--- 314 (873)
T ss_pred cCchhhhhhhhhhcCcccccCccee--eecccceeecccchh-hhhhcccccccchhhhhccchh-hhheeecchhh---
Confidence 4444444444444444433321110 112344444433221 1111123444555555555554 44444332111
Q ss_pred cccCCcccEEEEecCCCCCCCCc--------------------------ccccCCCCeEEEecCccchhhhccccccCCC
Q 002704 750 HFGFHSLQSFEVNFCSKLKDLTL--------------------------LVLIPNLKYIAVTDCKAMEEIISVGEFAGNP 803 (890)
Q Consensus 750 ~~~l~~L~~L~L~~c~~l~~l~~--------------------------l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~ 803 (890)
..++|+.|+|+++ .++.++. +..+++|+.|+|++|.. .-.+. +.....
T Consensus 315 --ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l-s~~IE--Daa~~f 388 (873)
T KOG4194|consen 315 --FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL-SWCIE--DAAVAF 388 (873)
T ss_pred --hcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE-EEEEe--cchhhh
Confidence 2445555555554 3444332 33445555555554331 11111 011111
Q ss_pred CcCcccceeccccccccccccCCC-CCCCCccEEeecCc
Q 002704 804 NAFAKLQYLRIGNLPNLKSIYLKP-LPFPCLKKLTVSDC 841 (890)
Q Consensus 804 ~~f~~L~~L~l~~~~~L~~l~~~~-~~~~~L~~L~i~~C 841 (890)
.++|+|+.|.+.+ .+++.++... ..+++|+.|++.+.
T Consensus 389 ~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 389 NGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred ccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 5678888888877 5677776543 34677777777653
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=3.7e-19 Score=187.05 Aligned_cols=287 Identities=22% Similarity=0.297 Sum_probs=160.6
Q ss_pred ceEEEEcccccccccc--CCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCc-cccCccCCCEEe
Q 002704 516 KLRRLSLMENQIENLS--EVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPS-GISKLVSLEHLD 592 (890)
Q Consensus 516 ~l~~L~l~~~~~~~l~--~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~ 592 (890)
.+|.|+++.|.+..++ .++.-.+++.|+|++|.++.. ..+-|..+.+|.+|.|+ .+.++.+|. +|.+|++|+.|+
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-~~~~F~~lnsL~tlkLs-rNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-ETGHFDSLNSLLTLKLS-RNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc-ccccccccchheeeecc-cCcccccCHHHhhhcchhhhhh
Confidence 3444444444444332 234444455555554444322 12224444455555555 344444432 333455555555
Q ss_pred ccCCCcccc-chHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcC
Q 002704 593 LSTSLISEI-PEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLG 671 (890)
Q Consensus 593 L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 671 (890)
|..|.|... --.|..|++|+.|.+..|. +..+..+.|-.|.++++|++..|++. ...-+.+-+
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~---------------~vn~g~lfg 291 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQ---------------AVNEGWLFG 291 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhh---------------hhhcccccc
Confidence 555544432 1234445555555554443 34444444555555555555555442 223455667
Q ss_pred CCCCceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcceEEecccCccccc
Q 002704 672 LKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQHF 751 (890)
Q Consensus 672 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 751 (890)
|+.|+.|+++.+.+..+.. ....++..|+.|+|+.+.- +.++-+++..+..|++|.|++| .+..+....+ .
T Consensus 292 Lt~L~~L~lS~NaI~rih~--d~WsftqkL~~LdLs~N~i-~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af-----~ 362 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHI--DSWSFTQKLKELDLSSNRI-TRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAF-----V 362 (873)
T ss_pred cchhhhhccchhhhheeec--chhhhcccceeEecccccc-ccCChhHHHHHHHhhhhccccc-chHHHHhhHH-----H
Confidence 7888888888877665432 1223455788888876543 3333345777788888888888 5666544333 2
Q ss_pred cCCcccEEEEecCCCCCC-C----CcccccCCCCeEEEecCccchhhhccccccCCC-CcCcccceeccccccccccccC
Q 002704 752 GFHSLQSFEVNFCSKLKD-L----TLLVLIPNLKYIAVTDCKAMEEIISVGEFAGNP-NAFAKLQYLRIGNLPNLKSIYL 825 (890)
Q Consensus 752 ~l~~L~~L~L~~c~~l~~-l----~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~-~~f~~L~~L~l~~~~~L~~l~~ 825 (890)
.+.+|+.|+|+++. +.- + ..+..+++|+.|.+.+| .++.++. .. .+|+.|+.|+|.+ .-+.++..
T Consensus 363 ~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k------rAfsgl~~LE~LdL~~-NaiaSIq~ 433 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK------RAFSGLEALEHLDLGD-NAIASIQP 433 (873)
T ss_pred HhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeecCc-eeeecch------hhhccCcccceecCCC-Ccceeecc
Confidence 58899999998873 321 1 23567999999999995 4777765 33 6889999999888 34556654
Q ss_pred CCCCCCCccEEee
Q 002704 826 KPLPFPCLKKLTV 838 (890)
Q Consensus 826 ~~~~~~~L~~L~i 838 (890)
....--.|++|.+
T Consensus 434 nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 434 NAFEPMELKELVM 446 (873)
T ss_pred cccccchhhhhhh
Confidence 3322115666654
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=7.5e-20 Score=193.11 Aligned_cols=300 Identities=20% Similarity=0.251 Sum_probs=220.0
Q ss_pred cccccceEEEEccccccccccC-CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCC-CCcccCccccCccCC
Q 002704 511 VIEWEKLRRLSLMENQIENLSE-VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYM-GLLELPSGISKLVSL 588 (890)
Q Consensus 511 ~~~~~~l~~L~l~~~~~~~l~~-~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~i~~lp~~i~~L~~L 588 (890)
...+..++-|-+....+..+|. ++.|.+|+.|.+.+|..+..... ++.++.||.+++..|+ .-.-+|..|..|..|
T Consensus 28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE--Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE--LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh--hccchhhHHHhhhccccccCCCCchhcccccc
Confidence 4456677888888777777765 78889999999998887654333 7889999999999554 233589999999999
Q ss_pred CEEeccCCCccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHH
Q 002704 589 EHLDLSTSLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEE 668 (890)
Q Consensus 589 ~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (890)
..|||+.|++++.|..+..-+++-.|+|++|+ +..+|..++-+|+.|-.|++++|... ..+..
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe----------------~LPPQ 168 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLE----------------MLPPQ 168 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhh----------------hcCHH
Confidence 99999999999999999999999999999995 89999998999999999999988764 25667
Q ss_pred hcCCCCCceEEEEecChhhhH--hhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcceEEecccC
Q 002704 669 LLGLKHLEVLSLTLGSSRALQ--SFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAG 746 (890)
Q Consensus 669 l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 746 (890)
...|.+|++|.++.+...-++ .++. ..+|..|.+++....-.--..++..+.+|..++++.| ++..+|.....
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPs----mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~ 243 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPS----MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYK 243 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCcc----chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhh
Confidence 788889999999888655432 2221 1255566665543322211235777889999999988 78888877664
Q ss_pred ccccccCCcccEEEEecCCCCCCCCc-ccccCCCCeEEEecCccchhhhccccccCCCCcCcccceec------------
Q 002704 747 EVQHFGFHSLQSFEVNFCSKLKDLTL-LVLIPNLKYIAVTDCKAMEEIISVGEFAGNPNAFAKLQYLR------------ 813 (890)
Q Consensus 747 ~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~f~~L~~L~------------ 813 (890)
+++|+.|+|+++ .++.+.. .+.-.+|++|+++.|. ++.+|. ....+++|+.|.
T Consensus 244 ------l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~------avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 244 ------LRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPD------AVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred ------hhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchH------HHhhhHHHHHHHhccCcccccCCc
Confidence 899999999999 6777753 5567899999999854 566654 113344444443
Q ss_pred -------------cccccccccccCCCCCCCCccEEeecCcccCCCCCCC
Q 002704 814 -------------IGNLPNLKSIYLKPLPFPCLKKLTVSDCYELKKLPLD 850 (890)
Q Consensus 814 -------------l~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~Lp~~ 850 (890)
..+ .+|+-.|.+...++.|++|.+ +|..|..||..
T Consensus 310 SGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L-~~NrLiTLPea 357 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKL-DHNRLITLPEA 357 (1255)
T ss_pred cchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcc-cccceeechhh
Confidence 333 345555555555666666666 44566666654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=3.7e-18 Score=171.97 Aligned_cols=311 Identities=23% Similarity=0.253 Sum_probs=186.4
Q ss_pred CccccccceEEEEccccccccccCCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCC
Q 002704 509 PDVIEWEKLRRLSLMENQIENLSEVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSL 588 (890)
Q Consensus 509 ~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L 588 (890)
++...++++..|.+..|.+..+|.|+.|+.|..|.+..| .+..+|....+.+.+|.+|||+ .+.++++|..++.+.+|
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLR-dNklke~Pde~clLrsL 277 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLR-DNKLKEVPDEICLLRSL 277 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecc-ccccccCchHHHHhhhh
Confidence 456677888889999999999999999999999999855 4567888877889999999999 78899999999999999
Q ss_pred CEEeccCCCccccchHHhcCCcCCEeeccCCCCccccChhhhcCCcc--CcEeeccCCCcCccCCCCCCcccc--CC-Cc
Q 002704 589 EHLDLSTSLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSR--LHVLRMFGNGYFSCGLYPEDSVLF--GG-GE 663 (890)
Q Consensus 589 ~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~--~~-~~ 663 (890)
++||+++|.|+.+|.+++++ .|+.|-+.||. +..+-.+++.+=+. |++|+-. +...+.-...+... +. ..
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~---~~~dglS~se~~~e~~~t~~~ 352 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSK---IKDDGLSQSEGGTETAMTLPS 352 (565)
T ss_pred hhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHh---hccCCCCCCcccccccCCCCC
Confidence 99999999999999999999 99999999986 55555554433221 3333321 00000000000000 00 11
Q ss_pred ccHHHhcCCCCCceEEEEecChhhhHhhhhhcccccccceeeecccCCC-----------------------ceecccCc
Q 002704 664 LLVEELLGLKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGS-----------------------TMVDVSGL 720 (890)
Q Consensus 664 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----------------------~~~~~~~l 720 (890)
........+.+.+.|+++.-..+..+.-.+...-..-++..+++.+.-. ..++ ..+
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~-~~l 431 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVP-LEL 431 (565)
T ss_pred CcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccch-HHH
Confidence 1222333445556666655444433321111110011222222221111 1111 013
Q ss_pred ccccCccEEEeecCCCcceEEecccCccccccCCcccEEEEecCCCCCCCCcccccCCCCeEEEecCccchhhhcccccc
Q 002704 721 ANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVNFCSKLKDLTLLVLIPNLKYIAVTDCKAMEEIISVGEFA 800 (890)
Q Consensus 721 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~ 800 (890)
..+++|..|+++++ -+.++|.++.. +..|+.|+|+.+ ....+|.+...+....+.+..++.++.++.
T Consensus 432 ~~l~kLt~L~L~NN-~Ln~LP~e~~~------lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~----- 498 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNN-LLNDLPEEMGS------LVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDP----- 498 (565)
T ss_pred Hhhhcceeeecccc-hhhhcchhhhh------hhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccCh-----
Confidence 44556666666655 45555554442 555666666665 444444433332222222222233444332
Q ss_pred CC-CCcCcccceeccccccccccccCCCCCCCCccEEeecCcc
Q 002704 801 GN-PNAFAKLQYLRIGNLPNLKSIYLKPLPFPCLKKLTVSDCY 842 (890)
Q Consensus 801 ~~-~~~f~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~C~ 842 (890)
+ ...+.+|..|++.+ ..+..+|...+.|.+|++|.+.+.|
T Consensus 499 -~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 499 -SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 2 25678888888887 5788888888889999999998864
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=1.5e-16 Score=176.86 Aligned_cols=101 Identities=34% Similarity=0.435 Sum_probs=85.8
Q ss_pred ceEEEEccccccccccC-CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEecc
Q 002704 516 KLRRLSLMENQIENLSE-VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLS 594 (890)
Q Consensus 516 ~l~~L~l~~~~~~~l~~-~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~ 594 (890)
++++|++++|.+..+|. +..+++|+.|.++.| .+...|.+ ...+++|++|+|. |+....+|.++..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s-~~~~~~l~~lnL~-~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSS-CSNMRNLQYLNLK-NNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchh-hhhhhcchhheec-cchhhcCchhHHhhhcccccccc
Confidence 59999999999987765 788899999999955 45677766 8999999999999 99999999999999999999999
Q ss_pred CCCccccchHHhcCCcCCEeeccCC
Q 002704 595 TSLISEIPEELKALVNLKCLNLENT 619 (890)
Q Consensus 595 ~~~i~~lp~~l~~l~~L~~L~l~~~ 619 (890)
+|.+..+|..+..++.+..++.++|
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcc
Confidence 9999988887766666555555555
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=3.7e-14 Score=163.60 Aligned_cols=255 Identities=20% Similarity=0.199 Sum_probs=165.4
Q ss_pred cccEEEEcCCCcccCCccccccceEEEEccccccccccCCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCC
Q 002704 494 KENYLVYAGAGFREAPDVIEWEKLRRLSLMENQIENLSEVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYM 573 (890)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 573 (890)
+...+.....++..+|... .++++.|++.+|.+..+|.. +++|++|++++|.+. .+|.. .++|+.|+|+ .+
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls-~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPVL----PPGLLELSIF-SN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccCc----ccccceeecc-CC
Confidence 3455666666666666533 24788888888888877754 478899999877665 45542 4678888888 56
Q ss_pred CCcccCccccCccCCCEEeccCCCccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCC
Q 002704 574 GLLELPSGISKLVSLEHLDLSTSLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYP 653 (890)
Q Consensus 574 ~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 653 (890)
.+..+|... .+|+.|++++|+++.+|.. +++|+.|++++|. +..+|.. ..+|+.|++++|.+...
T Consensus 273 ~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~~L---- 337 (788)
T PRK15387 273 PLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTSL---- 337 (788)
T ss_pred chhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCccccc----
Confidence 677777633 5678888888888888863 4678899998885 5566642 24577788887766321
Q ss_pred CCccccCCCcccHHHhcCCCCCceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeec
Q 002704 654 EDSVLFGGGELLVEELLGLKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISD 733 (890)
Q Consensus 654 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 733 (890)
.. -..+|+.|+++.|....++.. ..+++.|.+.++.-.. ++.+ +++|+.|++++
T Consensus 338 -------------P~--lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~L~~---LP~l--~~~L~~LdLs~ 391 (788)
T PRK15387 338 -------------PT--LPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRLTS---LPAL--PSGLKELIVSG 391 (788)
T ss_pred -------------cc--cccccceEecCCCccCCCCCC------Ccccceehhhcccccc---Cccc--ccccceEEecC
Confidence 01 114678888887776655432 2356666666543221 1111 35688888887
Q ss_pred CCCcceEEecccCccccccCCcccEEEEecCCCCCCCCcccccCCCCeEEEecCccchhhhccccccCCCCcCcccceec
Q 002704 734 CYELVELKIDYAGEVQHFGFHSLQSFEVNFCSKLKDLTLLVLIPNLKYIAVTDCKAMEEIISVGEFAGNPNAFAKLQYLR 813 (890)
Q Consensus 734 ~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~f~~L~~L~ 813 (890)
| .++.+|. .+++|+.|++++| .+..+|.+ +.+|+.|++++|. ++.+|. ....+++|+.|+
T Consensus 392 N-~Lt~LP~---------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~Nq-Lt~LP~------sl~~L~~L~~Ld 451 (788)
T PRK15387 392 N-RLTSLPV---------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRNQ-LTRLPE------SLIHLSSETTVN 451 (788)
T ss_pred C-cccCCCC---------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccCc-ccccCh------HHhhccCCCeEE
Confidence 7 5655442 1467888888888 56666643 4567788888754 555544 224567777777
Q ss_pred ccccc
Q 002704 814 IGNLP 818 (890)
Q Consensus 814 l~~~~ 818 (890)
|++.+
T Consensus 452 Ls~N~ 456 (788)
T PRK15387 452 LEGNP 456 (788)
T ss_pred CCCCC
Confidence 77743
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.54 E-value=3.5e-17 Score=165.01 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=54.1
Q ss_pred cccccCccEEEeecCCCcceEEecccCccccccCCcccEEEEecCCCCCCCCc--ccccCCCCeEEEecCccchhhhccc
Q 002704 720 LANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVNFCSKLKDLTL--LVLIPNLKYIAVTDCKAMEEIISVG 797 (890)
Q Consensus 720 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~ 797 (890)
++.+.+|+.|++..+ ++..+| ++. ++..|++|++..+ +++.+|. ..++++|..|++.++ .+++.|.
T Consensus 202 lg~l~~L~~LyL~~N-ki~~lP-ef~------gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN-klke~Pd-- 269 (565)
T KOG0472|consen 202 LGGLESLELLYLRRN-KIRFLP-EFP------GCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPD-- 269 (565)
T ss_pred hcchhhhHHHHhhhc-ccccCC-CCC------ccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc-ccccCch--
Confidence 445556666666665 555554 333 2566666666665 4555442 345666666666663 3454444
Q ss_pred cccCCCCcCcccceeccccccccccccCCCCCCCCccEEeecC
Q 002704 798 EFAGNPNAFAKLQYLRIGNLPNLKSIYLKPLPFPCLKKLTVSD 840 (890)
Q Consensus 798 ~~~~~~~~f~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~ 840 (890)
...-+.+|.+|++++ ..+..++.+.+.+ .|+.|.+.+
T Consensus 270 ----e~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 270 ----EICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred ----HHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcC
Confidence 223455566666665 3455555544444 444444444
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.50 E-value=1.3e-14 Score=171.14 Aligned_cols=315 Identities=25% Similarity=0.316 Sum_probs=197.7
Q ss_pred cccCCccccccceEEEEccccc--cccccC--CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCc
Q 002704 505 FREAPDVIEWEKLRRLSLMENQ--IENLSE--VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPS 580 (890)
Q Consensus 505 ~~~~~~~~~~~~l~~L~l~~~~--~~~l~~--~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~ 580 (890)
....+.....++++.|-+..|. +..++. |..++.||+|+|++|.....+|.. ++.+-+||||+|+ .+.+..+|.
T Consensus 535 ~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~-~t~I~~LP~ 612 (889)
T KOG4658|consen 535 IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLS-DTGISHLPS 612 (889)
T ss_pred hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhccccc-CCCccccch
Confidence 3334444555678889888885 555555 788999999999999888899988 8999999999999 999999999
Q ss_pred cccCccCCCEEeccCCC-ccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCcccc
Q 002704 581 GISKLVSLEHLDLSTSL-ISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLF 659 (890)
Q Consensus 581 ~i~~L~~L~~L~L~~~~-i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 659 (890)
++++|+.|.+|++..+. +..+|.....|++||+|.+.... .......++.+.+|++|....+....
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s----------- 679 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISS----------- 679 (889)
T ss_pred HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecch-----------
Confidence 99999999999999985 44566777779999999998764 11111224555555555544333321
Q ss_pred CCCcccHHHhcCCCCCceEEEEec-ChhhhHhhhhhcccccccceeeecccCCCceec--ccC--cc-cccCccEEEeec
Q 002704 660 GGGELLVEELLGLKHLEVLSLTLG-SSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVD--VSG--LA-NLKQLKRLRISD 733 (890)
Q Consensus 660 ~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~--l~-~l~~L~~L~l~~ 733 (890)
......+..+.+|+.+..... ................+++.|.+.+|....... ..+ .. .++++..+.+.+
T Consensus 680 ---~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 680 ---VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred ---hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 112233333444432221111 001111122222333477777777776643211 011 11 245677777777
Q ss_pred CCCcceEEecccCccccccCCcccEEEEecCCCCCCC-CcccccCCCCeEEEecCccchhhhccccccCCCCcCccccee
Q 002704 734 CYELVELKIDYAGEVQHFGFHSLQSFEVNFCSKLKDL-TLLVLIPNLKYIAVTDCKAMEEIISVGEFAGNPNAFAKLQYL 812 (890)
Q Consensus 734 ~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~f~~L~~L 812 (890)
|.....+.... ..++|+.|.+..|+.++++ |....+..++.+.+..+ .+.... ...+.+.||++..+
T Consensus 757 ~~~~r~l~~~~-------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~----~~~~l~~l~~i~~~ 824 (889)
T KOG4658|consen 757 CHMLRDLTWLL-------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLR----MLCSLGGLPQLYWL 824 (889)
T ss_pred cccccccchhh-------ccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccce----eeecCCCCceeEec
Confidence 76666543222 3699999999999877775 44445555554333322 122110 00122456666666
Q ss_pred ccccccccccccCCC----CCCCCccEEeecCc-ccCCCCCCC
Q 002704 813 RIGNLPNLKSIYLKP----LPFPCLKKLTVSDC-YELKKLPLD 850 (890)
Q Consensus 813 ~l~~~~~L~~l~~~~----~~~~~L~~L~i~~C-~~L~~Lp~~ 850 (890)
.+.... ++.|.++. ..+|.+.++.+.+| +++..+|..
T Consensus 825 ~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 825 PLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred ccCccc-hhheehhcCcccccCccccccceeccccceeecCCc
Confidence 666533 66666555 56788889999997 889999875
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=7.6e-16 Score=137.40 Aligned_cols=164 Identities=24% Similarity=0.433 Sum_probs=136.9
Q ss_pred cccCCccccccceEEEEcccccccccc-CCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCcccc
Q 002704 505 FREAPDVIEWEKLRRLSLMENQIENLS-EVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGIS 583 (890)
Q Consensus 505 ~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~ 583 (890)
+.+.+....++++++|.+++|.+..+| .+..+.+|++|.+++|. +..+|.+ ++.++.|+.|+++ .+.+..+|.+||
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~-issl~klr~lnvg-mnrl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTS-ISSLPKLRILNVG-MNRLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChh-hhhchhhhheecc-hhhhhcCccccC
Confidence 445667777888999999999988764 48899999999999554 4577777 8999999999999 778888999999
Q ss_pred CccCCCEEeccCCCcc--ccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCC
Q 002704 584 KLVSLEHLDLSTSLIS--EIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGG 661 (890)
Q Consensus 584 ~L~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 661 (890)
.++-|+.|||.+|++. .+|..+..++.|+-|++++|. .+.+|.+ ++++++||.|.+..|...+
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll~------------- 164 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLLS------------- 164 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchhh-------------
Confidence 9999999999999887 689888889999999999985 6788888 8999999999998887653
Q ss_pred CcccHHHhcCCCCCceEEEEecChhhhH
Q 002704 662 GELLVEELLGLKHLEVLSLTLGSSRALQ 689 (890)
Q Consensus 662 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 689 (890)
.+.+++.+.+|+.|.|.++....++
T Consensus 165 ---lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 165 ---LPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred ---CcHHHHHHHHHHHHhcccceeeecC
Confidence 5678888889999988877655543
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=7.7e-15 Score=163.49 Aligned_cols=284 Identities=21% Similarity=0.262 Sum_probs=148.8
Q ss_pred ceEEEEccccccccccCCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEeccC
Q 002704 516 KLRRLSLMENQIENLSEVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLST 595 (890)
Q Consensus 516 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~ 595 (890)
++++|....|.+..+..-+...+|++++++.|.+. .+| ++++.+.+|..|+.. ++.+..+|..+..+.+|++|.+..
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n-~N~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLP-EWIGACANLEALNAN-HNRLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhh-cch-HHHHhcccceEeccc-chhHHhhHHHHhhhhhHHHHHhhh
Confidence 34444444444443222233345555555544432 344 445555555555555 444455555555555555555555
Q ss_pred CCccccchHHhcCCcCCEeeccCCCCccccChhhhcCCcc-CcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCC
Q 002704 596 SLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSR-LHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKH 674 (890)
Q Consensus 596 ~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 674 (890)
|.++.+|.....+++|++|+|..|+ +..+|...+..+.. |+.|+.+.+........ ++ ..++.
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~---------~e------~~~~~ 360 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY---------EE------NNHAA 360 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccc---------cc------hhhHH
Confidence 5555555555555555555555553 44455443333222 34444433332210000 00 01122
Q ss_pred CceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcceEEecccCccccccCC
Q 002704 675 LEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFH 754 (890)
Q Consensus 675 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~l~ 754 (890)
|+.|.+.++....- .+.......+|+.|.|+.+.-....+ ..+.+++.|++|+++|| +++.+|.... .++
T Consensus 361 Lq~LylanN~Ltd~--c~p~l~~~~hLKVLhLsyNrL~~fpa-s~~~kle~LeeL~LSGN-kL~~Lp~tva------~~~ 430 (1081)
T KOG0618|consen 361 LQELYLANNHLTDS--CFPVLVNFKHLKVLHLSYNRLNSFPA-SKLRKLEELEELNLSGN-KLTTLPDTVA------NLG 430 (1081)
T ss_pred HHHHHHhcCccccc--chhhhccccceeeeeecccccccCCH-HHHhchHHhHHHhcccc-hhhhhhHHHH------hhh
Confidence 33333333322210 00111112256666665543322221 23677888999999998 8888886655 378
Q ss_pred cccEEEEecCCCCCCCCcccccCCCCeEEEecCccchhhhccccccCCCCcCcccceeccccccccccccCCCCCCCCcc
Q 002704 755 SLQSFEVNFCSKLKDLTLLVLIPNLKYIAVTDCKAMEEIISVGEFAGNPNAFAKLQYLRIGNLPNLKSIYLKPLPFPCLK 834 (890)
Q Consensus 755 ~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~L~~l~~~~~~~~~L~ 834 (890)
.|+.|...++ .+..+|.+.+++.|+.++|+.|+ +..+.. ...-.-|+|++|++++.++ ..+....|+.++
T Consensus 431 ~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l-----~~~~p~p~LkyLdlSGN~~---l~~d~~~l~~l~ 500 (1081)
T KOG0618|consen 431 RLHTLRAHSN-QLLSFPELAQLPQLKVLDLSCNN-LSEVTL-----PEALPSPNLKYLDLSGNTR---LVFDHKTLKVLK 500 (1081)
T ss_pred hhHHHhhcCC-ceeechhhhhcCcceEEecccch-hhhhhh-----hhhCCCcccceeeccCCcc---cccchhhhHHhh
Confidence 8888888887 68888888999999999998654 444422 0111227899999998665 223333444444
Q ss_pred EEee
Q 002704 835 KLTV 838 (890)
Q Consensus 835 ~L~i 838 (890)
.+..
T Consensus 501 ~l~~ 504 (1081)
T KOG0618|consen 501 SLSQ 504 (1081)
T ss_pred hhhh
Confidence 4443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=3.2e-13 Score=157.07 Aligned_cols=243 Identities=17% Similarity=0.210 Sum_probs=140.8
Q ss_pred eEEEEccccccccccC-CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEeccC
Q 002704 517 LRRLSLMENQIENLSE-VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLST 595 (890)
Q Consensus 517 l~~L~l~~~~~~~l~~-~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~ 595 (890)
...|.+.++.+..+|. + .++|+.|++++|.+. .+|..++ .+|++|+++ ++.++.+|..+. .+|+.|+|++
T Consensus 180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls-~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTIPACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYAN-SNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECC-CCccccCChhhh--ccccEEECcC
Confidence 4556666666666654 3 246888888876554 5665532 478888888 566777776553 4688888888
Q ss_pred CCccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCCC
Q 002704 596 SLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKHL 675 (890)
Q Consensus 596 ~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 675 (890)
|++..+|..+. .+|+.|++++|. +..+|.. + .++|++|++++|.+... +..+ .++|
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l--~~sL~~L~Ls~N~Lt~L----------------P~~l--p~sL 306 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNK-ISCLPEN-L--PEELRYLSVYDNSIRTL----------------PAHL--PSGI 306 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCc-cCccccc-c--CCCCcEEECCCCccccC----------------cccc--hhhH
Confidence 88888887653 578888888774 5567754 2 24788888887766421 0011 1245
Q ss_pred ceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcceEEecccCccccccCCc
Q 002704 676 EVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHS 755 (890)
Q Consensus 676 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~l~~ 755 (890)
+.|+++.|....++.. ..++|+.|.+.++.-.. ++. .+ +++|+.|++++| .++.+|..+ .++
T Consensus 307 ~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~Lt~-LP~-~l--~~sL~~L~Ls~N-~L~~LP~~l--------p~~ 368 (754)
T PRK15370 307 THLNVQSNSLTALPET-----LPPGLKTLEAGENALTS-LPA-SL--PPELQVLDVSKN-QITVLPETL--------PPT 368 (754)
T ss_pred HHHHhcCCccccCCcc-----ccccceeccccCCcccc-CCh-hh--cCcccEEECCCC-CCCcCChhh--------cCC
Confidence 5556655554433211 12356666666553222 110 12 257778888777 555554321 357
Q ss_pred ccEEEEecCCCCCCCCcccccCCCCeEEEecCccchhhhccccccC-CCCcCcccceecccc
Q 002704 756 LQSFEVNFCSKLKDLTLLVLIPNLKYIAVTDCKAMEEIISVGEFAG-NPNAFAKLQYLRIGN 816 (890)
Q Consensus 756 L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~-~~~~f~~L~~L~l~~ 816 (890)
|+.|+|++| .+..+|.- ..++|+.|++++|. +..+|. ... ....+|.+..|.+.+
T Consensus 369 L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N~-L~~LP~---sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 369 ITTLDVSRN-ALTNLPEN-LPAALQIMQASRNN-LVRLPE---SLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred cCEEECCCC-cCCCCCHh-HHHHHHHHhhccCC-cccCch---hHHHHhhcCCCccEEEeeC
Confidence 788888877 46665531 12367777777754 344432 000 012345556666555
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=5.4e-15 Score=131.98 Aligned_cols=167 Identities=25% Similarity=0.369 Sum_probs=134.2
Q ss_pred ccccCCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEeccCCCccccchHHhc
Q 002704 528 ENLSEVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTSLISEIPEELKA 607 (890)
Q Consensus 528 ~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~ 607 (890)
..++.+.+++++..|.+++|.++ .+|+. +..+.+|++|+++ |+.++++|.+|+.|++|+.|++.-|++..+|..++.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~-nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLS-NNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hhcccccchhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcc-cchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 44566677888999999988876 55666 8999999999999 999999999999999999999999999999999999
Q ss_pred CCcCCEeeccCCCCccc-cChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCCCceEEEEecChh
Q 002704 608 LVNLKCLNLENTGLLLK-IPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKHLEVLSLTLGSSR 686 (890)
Q Consensus 608 l~~L~~L~l~~~~~~~~-~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 686 (890)
++-|+.||+.+|+..+. +|.. +-.|+.|+-|+++.|.+. ..+.+.+++++|+.|.+..+...
T Consensus 101 ~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe----------------~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFE----------------ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred CchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcc----------------cCChhhhhhcceeEEeeccCchh
Confidence 99999999999875544 5644 777899999999988663 35678888998888887665443
Q ss_pred hhHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcceEEec
Q 002704 687 ALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKID 743 (890)
Q Consensus 687 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 743 (890)
+++. .++.++.|++|+|.++ .++-+|+.
T Consensus 164 ~lpk----------------------------eig~lt~lrelhiqgn-rl~vlppe 191 (264)
T KOG0617|consen 164 SLPK----------------------------EIGDLTRLRELHIQGN-RLTVLPPE 191 (264)
T ss_pred hCcH----------------------------HHHHHHHHHHHhcccc-eeeecChh
Confidence 3321 1455778888888888 66666544
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=1.1e-12 Score=152.73 Aligned_cols=241 Identities=22% Similarity=0.227 Sum_probs=175.4
Q ss_pred EEEEcCCCcccCCccccccceEEEEccccccccccCCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCc
Q 002704 497 YLVYAGAGFREAPDVIEWEKLRRLSLMENQIENLSEVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLL 576 (890)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~ 576 (890)
-+.....++...|... .++++.|++++|.+..+|.. .+++|++|++++|.+. .+|..+ ..+|+.|+|+ ++.+.
T Consensus 182 ~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls-~N~L~ 254 (754)
T PRK15370 182 ELRLKILGLTTIPACI-PEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLT-SIPATL---PDTIQEMELS-INRIT 254 (754)
T ss_pred EEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChh-hccCCCEEECCCCccc-cCChhh---hccccEEECc-CCccC
Confidence 3444555565555432 35799999999999887752 2368999999988764 677653 2579999999 67788
Q ss_pred ccCccccCccCCCEEeccCCCccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCc
Q 002704 577 ELPSGISKLVSLEHLDLSTSLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDS 656 (890)
Q Consensus 577 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 656 (890)
.+|..+. .+|++|++++|+++.+|..+. .+|++|++++|+ +..+|.. + .++|+.|++++|.+...
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~N~Lt~L------- 319 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQSNSLTAL------- 319 (754)
T ss_pred cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcCCccccC-------
Confidence 9998775 589999999999999998664 589999999995 6678864 2 25799999998877431
Q ss_pred cccCCCcccHHHhcCCCCCceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCC
Q 002704 657 VLFGGGELLVEELLGLKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYE 736 (890)
Q Consensus 657 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 736 (890)
+..+ .++|+.|.++.+....++.. +.++|+.|+++++.-.. ++. .+ .++|+.|+|++| .
T Consensus 320 ---------P~~l--~~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~L~~-LP~-~l--p~~L~~LdLs~N-~ 378 (754)
T PRK15370 320 ---------PETL--PPGLKTLEAGENALTSLPAS-----LPPELQVLDVSKNQITV-LPE-TL--PPTITTLDVSRN-A 378 (754)
T ss_pred ---------Cccc--cccceeccccCCccccCChh-----hcCcccEEECCCCCCCc-CCh-hh--cCCcCEEECCCC-c
Confidence 1111 25788888888876655432 23589999998875432 211 12 368999999999 6
Q ss_pred cceEEecccCccccccCCcccEEEEecCCCCCCCCc-----ccccCCCCeEEEecCcc
Q 002704 737 LVELKIDYAGEVQHFGFHSLQSFEVNFCSKLKDLTL-----LVLIPNLKYIAVTDCKA 789 (890)
Q Consensus 737 l~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-----l~~l~~L~~L~L~~c~~ 789 (890)
++.+|... ..+|+.|++++| ++..+|. ...+|++..|++.+|+.
T Consensus 379 Lt~LP~~l--------~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 379 LTNLPENL--------PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCCCCHhH--------HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 77766542 357999999998 6777653 34568999999999764
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=1.4e-12 Score=150.59 Aligned_cols=254 Identities=19% Similarity=0.169 Sum_probs=187.4
Q ss_pred ceEEEEccccccccccC-CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEecc
Q 002704 516 KLRRLSLMENQIENLSE-VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLS 594 (890)
Q Consensus 516 ~l~~L~l~~~~~~~l~~-~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~ 594 (890)
+-..|+++.+.+..+|. ++ ++|+.|.+.+|.+. .+|. .+++|++|+|+ ++.++.+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs-~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVS-GNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEec-CCccCcccCc---ccccceeecc
Confidence 34568899998887776 33 58999999987765 4664 25899999999 6788888864 4689999999
Q ss_pred CCCccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCC
Q 002704 595 TSLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKH 674 (890)
Q Consensus 595 ~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 674 (890)
+|.++.+|.. +.+|+.|++++|. +..+|. .+++|+.|++++|.+... .. -..+
T Consensus 271 ~N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~----~p~~L~~LdLS~N~L~~L-----------------p~--lp~~ 323 (788)
T PRK15387 271 SNPLTHLPAL---PSGLCKLWIFGNQ-LTSLPV----LPPGLQELSVSDNQLASL-----------------PA--LPSE 323 (788)
T ss_pred CCchhhhhhc---hhhcCEEECcCCc-cccccc----cccccceeECCCCccccC-----------------CC--Cccc
Confidence 9999998863 3678899999995 677874 257899999999877431 00 1235
Q ss_pred CceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcceEEecccCccccccCC
Q 002704 675 LEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFH 754 (890)
Q Consensus 675 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~l~ 754 (890)
|+.|.++.|....++.+ ..+|+.|+++++.-..... + .++|+.|++++| .+..+|. .+.
T Consensus 324 L~~L~Ls~N~L~~LP~l------p~~Lq~LdLS~N~Ls~LP~---l--p~~L~~L~Ls~N-~L~~LP~---------l~~ 382 (788)
T PRK15387 324 LCKLWAYNNQLTSLPTL------PSGLQELSVSDNQLASLPT---L--PSELYKLWAYNN-RLTSLPA---------LPS 382 (788)
T ss_pred ccccccccCcccccccc------ccccceEecCCCccCCCCC---C--Ccccceehhhcc-ccccCcc---------ccc
Confidence 66777877776655432 2478899998764332211 1 357888999887 6666542 246
Q ss_pred cccEEEEecCCCCCCCCcccccCCCCeEEEecCccchhhhccccccCCCCcCcccceeccccccccccccCCCCCCCCcc
Q 002704 755 SLQSFEVNFCSKLKDLTLLVLIPNLKYIAVTDCKAMEEIISVGEFAGNPNAFAKLQYLRIGNLPNLKSIYLKPLPFPCLK 834 (890)
Q Consensus 755 ~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~L~~l~~~~~~~~~L~ 834 (890)
+|+.|+|++| .++.+|.. .++|+.|++++|. ++.+|. .+.+|+.|++++ .+++.+|.....+++|+
T Consensus 383 ~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~---------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~ 448 (788)
T PRK15387 383 GLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM---------LPSGLLSLSVYR-NQLTRLPESLIHLSSET 448 (788)
T ss_pred ccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc---------chhhhhhhhhcc-CcccccChHHhhccCCC
Confidence 8999999999 57777753 4789999999975 555543 345788899988 56888887777889999
Q ss_pred EEeecCcc
Q 002704 835 KLTVSDCY 842 (890)
Q Consensus 835 ~L~i~~C~ 842 (890)
.|++++++
T Consensus 449 ~LdLs~N~ 456 (788)
T PRK15387 449 TVNLEGNP 456 (788)
T ss_pred eEECCCCC
Confidence 99998874
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.35 E-value=1.5e-10 Score=128.88 Aligned_cols=296 Identities=16% Similarity=0.096 Sum_probs=173.6
Q ss_pred CCcccchHHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHH
Q 002704 154 EPTMVGLQSQLEEVWRCLVE----EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIG 229 (890)
Q Consensus 154 ~~~~~Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (890)
++.++||+++++++...+.+ .....+.|+|++|+|||++++.++++.. .....-..+++++....+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 45788999999999998843 3446788999999999999999999872 222234567777777778889999999
Q ss_pred HHhcCccccccccCHHHHHHHHHHHhc--CCeEEEEEecCCCcc------ccccccccCCCCCCCCcEEEEecCCHHHHh
Q 002704 230 EKIGLLNETWKSRRIEQKALDIFRILR--GKKFVVLLDDIWQRV------DLTKVGVPLPSSQTSASKVVFTTRSEEVCG 301 (890)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 301 (890)
.++..........+.++....+.+.+. +++.+||||+++... .+..+...+....+....+|.++....+..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhh
Confidence 998752211133456677777777774 467899999997532 122222222221111223566665543322
Q ss_pred ccc-------CCceeecCCCChhhHHHHHHHHhcCC---ccCCCccHHHHHHHHHhHhCCchhHHHHHHHHhc----cC-
Q 002704 302 LME-------AHKKFKVQCLSGNDAWELFRQKVGEE---TLNCHPYILELAQTVTKECGGLPLALITIGRAMA----CK- 366 (890)
Q Consensus 302 ~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~----~~- 366 (890)
... ....+.+.+++.++..+++..++... ....+..++.+++......|..+.|+..+-.+.. ..
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 211 12467899999999999999876321 1122222333444443445667777776654321 11
Q ss_pred --CChhHHHHHHHHHhcccCCCCCCCcchhchHHhhccCCCCchhhhHHhhh-c-cCCC-CccccHHHHHHH--HhhCCC
Q 002704 367 --KTPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNDTIRSCLLYC-C-LYPE-DCCISKENLVDC--WIGEGL 439 (890)
Q Consensus 367 --~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~-~-~fp~-~~~i~~~~li~~--w~a~g~ 439 (890)
-+.+....+.+.+. .....-.+..||.+ +..|+++ + .... ...+...++... .+++.+
T Consensus 268 ~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 268 RKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 14555665555442 12234467889974 3444433 2 2221 133555555432 222111
Q ss_pred ccCccccchhhhHHHHHHHHHHhcccccc
Q 002704 440 LNGSVTLGSHEQGYHIVGILVQACLLEEV 468 (890)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 468 (890)
-. ..-.......+++.|...|+|...
T Consensus 333 ~~---~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 333 GY---EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CC---CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 00 011234566788999999998753
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=6.2e-14 Score=141.82 Aligned_cols=276 Identities=18% Similarity=0.209 Sum_probs=177.4
Q ss_pred cEEEEcCCCcccCCccccccceEEEEccccccccccC--CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCC
Q 002704 496 NYLVYAGAGFREAPDVIEWEKLRRLSLMENQIENLSE--VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYM 573 (890)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 573 (890)
..+.+.+.++.++|.... +....+.+..|.|..+|+ |..+++||.|+|+.|.+...-|.. |.+++.|..|-+.+++
T Consensus 49 ~~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A-F~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA-FKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh-hhhhHhhhHHHhhcCC
Confidence 455566778888876543 467788999999999886 899999999999988776655555 8999999888888789
Q ss_pred CCcccCc-cccCccCCCEEeccCCCccccch-HHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCC
Q 002704 574 GLLELPS-GISKLVSLEHLDLSTSLISEIPE-ELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGL 651 (890)
Q Consensus 574 ~i~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 651 (890)
.|+.+|+ .|++|..|+-|.+.-|++..++. .+..|++|..|.+.+|. ...++.+.+..+..++++.+..|.+.....
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccc
Confidence 9999997 57899999999999999997765 78899999999999984 788888778999999999998887532111
Q ss_pred CCCCccccCCCcccHHHhcCCCCCceEEEEecChhhhHhhhhhccccccccee---eecccCCCceecccCcccccCccE
Q 002704 652 YPEDSVLFGGGELLVEELLGLKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAM---LLQDFKGSTMVDVSGLANLKQLKR 728 (890)
Q Consensus 652 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L---~l~~~~~~~~~~~~~l~~l~~L~~ 728 (890)
.+...-. ....+.+++...-.....+........ ....+.-+++.+ ....|......+...+..+++|+.
T Consensus 206 L~wla~~---~a~~~ietsgarc~~p~rl~~~Ri~q~----~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 206 LPWLADD---LAMNPIETSGARCVSPYRLYYKRINQE----DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRK 278 (498)
T ss_pred cchhhhH---HhhchhhcccceecchHHHHHHHhccc----chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceE
Confidence 1000000 000001111110000000000000000 000000011111 111111111111123677889999
Q ss_pred EEeecCCCcceEEecccCccccccCCcccEEEEecCCCCCCCC--cccccCCCCeEEEecCc
Q 002704 729 LRISDCYELVELKIDYAGEVQHFGFHSLQSFEVNFCSKLKDLT--LLVLIPNLKYIAVTDCK 788 (890)
Q Consensus 729 L~l~~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~ 788 (890)
|++++| .++.+...++. ....++.|.|..+ ++..+. .+..+..|+.|+|.+|.
T Consensus 279 lnlsnN-~i~~i~~~aFe-----~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 279 LNLSNN-KITRIEDGAFE-----GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred eccCCC-ccchhhhhhhc-----chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCe
Confidence 999888 77777666553 4777888888887 566654 36677888888888855
No 24
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=9.6e-11 Score=145.65 Aligned_cols=292 Identities=14% Similarity=0.145 Sum_probs=178.1
Q ss_pred CCcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCC-CCHHHHHHHHHHHh
Q 002704 154 EPTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKD-LRLESIQEVIGEKI 232 (890)
Q Consensus 154 ~~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l 232 (890)
.+.++-|+.-.+.+-+ ....+++.|.|++|.||||++.++.... . .++|+++... .+...+...++..+
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHH
Confidence 3456677755554432 2457899999999999999999988543 2 5899998644 45666667777666
Q ss_pred cCcccc-----------ccccCHHHHHHHHHHHhc--CCeEEEEEecCCCcc--ccc-cccccCCCCCCCCcEEEEecCC
Q 002704 233 GLLNET-----------WKSRRIEQKALDIFRILR--GKKFVVLLDDIWQRV--DLT-KVGVPLPSSQTSASKVVFTTRS 296 (890)
Q Consensus 233 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~--~~~-~~~~~l~~~~~~gs~iivTtR~ 296 (890)
+..... ....+.......+...+. +.+++|||||+.... ... .+...+.... .+.++|||||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~-~~~~lv~~sR~ 161 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQP-ENLTLVVLSRN 161 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCC-CCeEEEEEeCC
Confidence 421100 000222333444444443 689999999984321 112 2222222223 56788899998
Q ss_pred HHHHh--ccc-CCceeecC----CCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHhccCCCh
Q 002704 297 EEVCG--LME-AHKKFKVQ----CLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMACKKTP 369 (890)
Q Consensus 297 ~~v~~--~~~-~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~ 369 (890)
..-.. .+. ......+. +|+.+|+.++|....+..- + .+....|.+.|+|.|+++..++..+......
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 42111 111 12234455 9999999999987765431 2 2667899999999999999888777543210
Q ss_pred hHHHHHHHHHhcccCCCCCCCcchhchHHh-hccCCCCchhhhHHhhhccCCCCccccHHHHHHHHhhCCCccCccccch
Q 002704 370 EEWSYAIQVLRTSSSQFPGLGNEVYPLLKF-SYDNLPNDTIRSCLLYCCLYPEDCCISKENLVDCWIGEGLLNGSVTLGS 448 (890)
Q Consensus 370 ~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~-sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~ 448 (890)
. ......+... ....+...+.- .|+.||++ .+..+...|+++ . ++.. +... +..
T Consensus 236 ~--~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~-~--~~~~-l~~~-----l~~------- 290 (903)
T PRK04841 236 L--HDSARRLAGI------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR-S--MNDA-LIVR-----VTG------- 290 (903)
T ss_pred h--hhhhHhhcCC------CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc-c--CCHH-HHHH-----HcC-------
Confidence 0 0111111000 01234444333 47899996 999999999986 2 3322 2221 111
Q ss_pred hhhHHHHHHHHHHhcccc-ccC--CCcEEehHHHHHHHHHHH
Q 002704 449 HEQGYHIVGILVQACLLE-EVD--EDEVKMHDVIRDMALWLA 487 (890)
Q Consensus 449 ~~~~~~~~~~L~~~~ll~-~~~--~~~~~mHdlv~~~~~~~~ 487 (890)
.+.+...+++|.+.+++. +.+ ...|+.|++++++.+...
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 223467799999999865 333 347999999999998765
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=1.9e-09 Score=113.19 Aligned_cols=182 Identities=13% Similarity=0.209 Sum_probs=114.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHH
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFR 253 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (890)
.+.+++.|+|++|+||||+++.+++... .... ..+|+ +....+..+++..|+..++.... ..+.......+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~--~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD--QERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC--CCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 4456899999999999999999998872 1221 22333 33345778899999998876532 2222333333332
Q ss_pred H-----hcCCeEEEEEecCCCcc--cccccccc--CCCCCCCCcEEEEecCCHHHHhcc----------cCCceeecCCC
Q 002704 254 I-----LRGKKFVVLLDDIWQRV--DLTKVGVP--LPSSQTSASKVVFTTRSEEVCGLM----------EAHKKFKVQCL 314 (890)
Q Consensus 254 ~-----l~~~~~LlvlDdv~~~~--~~~~~~~~--l~~~~~~gs~iivTtR~~~v~~~~----------~~~~~~~l~~L 314 (890)
. ..+++.++|+||++... .++.+... +.........|++|.... ....+ .....+++.++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 26788999999997643 33333221 111111333556665543 21111 11346789999
Q ss_pred ChhhHHHHHHHHhcCCccCCC-ccHHHHHHHHHhHhCCchhHHHHHHHHh
Q 002704 315 SGNDAWELFRQKVGEETLNCH-PYILELAQTVTKECGGLPLALITIGRAM 363 (890)
Q Consensus 315 ~~~~~~~lf~~~~~~~~~~~~-~~l~~~~~~i~~~c~GlPlai~~~~~~l 363 (890)
+.+|..+++...+........ .--.+..+.|++.|+|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999887643321111 1124789999999999999999888876
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.21 E-value=4.7e-09 Score=115.58 Aligned_cols=296 Identities=13% Similarity=0.097 Sum_probs=170.1
Q ss_pred CcccchHHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCC---ceEEEEEeCCCCCHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVE----EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNF---DLVILVVVSKDLRLESIQEV 227 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~~~~ 227 (890)
+.++||++++++|..++.. .....+.|+|++|+|||++++.+++......... -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4688999999999999854 3456899999999999999999998762111111 24678888777778889999
Q ss_pred HHHHhc---CccccccccCHHHHHHHHHHHhc--CCeEEEEEecCCCcc-c----ccccccc--CCCCCCCCcEEEEecC
Q 002704 228 IGEKIG---LLNETWKSRRIEQKALDIFRILR--GKKFVVLLDDIWQRV-D----LTKVGVP--LPSSQTSASKVVFTTR 295 (890)
Q Consensus 228 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~-~----~~~~~~~--l~~~~~~gs~iivTtR 295 (890)
|++++. ...+ ....+..+....+.+.+. +++++||||+++... . +..+... .....+....+|.+|.
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999883 2211 122344555666666663 568999999996541 1 1122111 1111112234455554
Q ss_pred CHHHHhccc-------CCceeecCCCChhhHHHHHHHHhcC--CccCCCccHHHHHHHHHhHhCCchhHH-HHHHHHh--
Q 002704 296 SEEVCGLME-------AHKKFKVQCLSGNDAWELFRQKVGE--ETLNCHPYILELAQTVTKECGGLPLAL-ITIGRAM-- 363 (890)
Q Consensus 296 ~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~l~~~~~~i~~~c~GlPlai-~~~~~~l-- 363 (890)
.......+. ....+.+.+++.++..+++..++.. .....+++..+....++..+.|.|..+ ..+-.+.
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 433211111 1246889999999999999988742 111122333345556677778888544 3322221
Q ss_pred --ccC---CChhHHHHHHHHHhcccCCCCCCCcchhchHHhhccCCCCchhhhHHhhhccC--CCCccccHHHHHHHHh-
Q 002704 364 --ACK---KTPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNDTIRSCLLYCCLY--PEDCCISKENLVDCWI- 435 (890)
Q Consensus 364 --~~~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~f--p~~~~i~~~~li~~w~- 435 (890)
..+ -+.+..+.+.+.+.. ....-.+..||.+ .|..+..++.. .++..+...++...+-
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 111 244444444443321 2223456788874 45443333311 1334466666655321
Q ss_pred -hCCCccCccccchhhhHHHHHHHHHHhcccccc
Q 002704 436 -GEGLLNGSVTLGSHEQGYHIVGILVQACLLEEV 468 (890)
Q Consensus 436 -a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 468 (890)
++.+ . ...-.......++..|...|++...
T Consensus 320 ~~~~~-~--~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDI-G--VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhc-C--CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2211 1 0123356677888999999988754
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.20 E-value=9.2e-11 Score=120.63 Aligned_cols=195 Identities=22% Similarity=0.268 Sum_probs=103.5
Q ss_pred ccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHH--------
Q 002704 157 MVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVI-------- 228 (890)
Q Consensus 157 ~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i-------- 228 (890)
|+||++++++|.+++..+....+.|+|+.|+|||+|++++.+.. +..-..++|+...+...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNESS-LRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHHH-HHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhhH-HHHHHHHHHHHH
Confidence 68999999999999988778999999999999999999999886 22222344544444432222 2222
Q ss_pred --HHHhcCcccc--------ccccCHHHHHHHHHHHhc--CCeEEEEEecCCCcc-ccc-------cccccCCC--CCCC
Q 002704 229 --GEKIGLLNET--------WKSRRIEQKALDIFRILR--GKKFVVLLDDIWQRV-DLT-------KVGVPLPS--SQTS 286 (890)
Q Consensus 229 --~~~l~~~~~~--------~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~-~~~-------~~~~~l~~--~~~~ 286 (890)
.+.+...... ............+.+.+. +++++||+||+.... ... .+...+.. .. .
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ-Q 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-C
Confidence 1112110000 001122233333434442 345999999985444 111 11111111 12 3
Q ss_pred CcEEEEecCCHHHHhc--------ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHH
Q 002704 287 ASKVVFTTRSEEVCGL--------MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALIT 358 (890)
Q Consensus 287 gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 358 (890)
...+|+++....+... .+....+.+++|+.+++++++...+... ... +.-.+..++|+..+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 3445555554444322 2333459999999999999999976443 211 11136679999999999998764
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.16 E-value=9.6e-10 Score=117.62 Aligned_cols=276 Identities=15% Similarity=0.152 Sum_probs=152.2
Q ss_pred CcccchHHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVE-----EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIG 229 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (890)
..|+|++..++++..++.. .....+.++|++|+|||+||+.+++.. ...+. .+..+.......+. ..+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~---~~~~~~~~~~~~l~-~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNLK---ITSGPALEKPGDLA-AIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEE---EeccchhcCchhHH-HHH
Confidence 3578999999999988852 345678899999999999999999887 22221 12221111222222 222
Q ss_pred HHhcCcc----ccccccCHHHHHHHHHHHhcCCeEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHHhcc--
Q 002704 230 EKIGLLN----ETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVCGLM-- 303 (890)
Q Consensus 230 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~-- 303 (890)
..++... +.....+ ......+...+.+.+..+|+|+..+...+.. .++ +.+-|..||+...+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~----~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP----PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC----CeEEEEecCCccccCHHHHh
Confidence 2332211 0001111 1223445566666677777777654443321 111 344556677764432211
Q ss_pred cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHhccCCChhHHHHHHHHHhccc
Q 002704 304 EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMACKKTPEEWSYAIQVLRTSS 383 (890)
Q Consensus 304 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 383 (890)
.....+++++++.++..+++.+.+.......++ +....|++.|+|.|-.+..++..+. ..+. ..+...
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~---~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~-~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEP---EAALEIARRSRGTPRIANRLLRRVR--------DFAQ-VRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCH---HHHHHHHHHhCCCcchHHHHHHHHH--------HHHH-HcCCCC
Confidence 123567899999999999999888654433333 6778999999999987655554331 1100 000000
Q ss_pred CCCCCCCcchhchHHhhccCCCCchhhhHHh-hhccCCCCccccHHHHHHHHhhCCCccCccccchhhhHHHHHH-HHHH
Q 002704 384 SQFPGLGNEVYPLLKFSYDNLPNDTIRSCLL-YCCLYPEDCCISKENLVDCWIGEGLLNGSVTLGSHEQGYHIVG-ILVQ 461 (890)
Q Consensus 384 ~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~-~L~~ 461 (890)
.. ...-......+...|..++.. .+..+. ....++.+ .+..+.+.... | .....++..++ .|++
T Consensus 217 it-~~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 217 IN-RDIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQ 282 (305)
T ss_pred cC-HHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHH
Confidence 00 000011222245567777764 454444 44566543 44444433322 1 12344566677 6999
Q ss_pred hccccccCCC
Q 002704 462 ACLLEEVDED 471 (890)
Q Consensus 462 ~~ll~~~~~~ 471 (890)
.+|+.....+
T Consensus 283 ~~li~~~~~g 292 (305)
T TIGR00635 283 IGFLQRTPRG 292 (305)
T ss_pred cCCcccCCch
Confidence 9999765433
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.13 E-value=4.1e-11 Score=129.69 Aligned_cols=238 Identities=23% Similarity=0.190 Sum_probs=104.0
Q ss_pred CCcceEEEeccCCCccc----cChhhhccCCCCcEEEeecCCCC------cccCccccCccCCCEEeccCCCcc-ccchH
Q 002704 536 CPHLLTLFLNNDGLLRI----INSDFLQSMPSLKVLNLSRYMGL------LELPSGISKLVSLEHLDLSTSLIS-EIPEE 604 (890)
Q Consensus 536 ~~~Lr~L~L~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~i------~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~ 604 (890)
++.|+.|.++++.+... ++.. +...+.|+.|+++++... ..++..+..+++|++|++++|.+. ..+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 34455555555443221 1111 334455555555522211 112334445556666666555554 23333
Q ss_pred HhcCCc---CCEeeccCCCCcc----ccChhhhcCC-ccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCCCc
Q 002704 605 LKALVN---LKCLNLENTGLLL----KIPLQLISHF-SRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKHLE 676 (890)
Q Consensus 605 l~~l~~---L~~L~l~~~~~~~----~~p~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 676 (890)
+..+.+ |++|++++|.... .+... +..+ ++|+.|++++|.+...+ .......+..+++|+
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~-----------~~~~~~~~~~~~~L~ 168 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS-----------CEALAKALRANRDLK 168 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH-----------HHHHHHHHHhCCCcC
Confidence 333333 6666665554221 11111 3334 55566666655543100 011233444455566
Q ss_pred eEEEEecChhh--hHhhhhhcccccccceeeecccCCCcee--c-ccCcccccCccEEEeecCCCcceEEecc-cCcccc
Q 002704 677 VLSLTLGSSRA--LQSFLNSHMLRSCTRAMLLQDFKGSTMV--D-VSGLANLKQLKRLRISDCYELVELKIDY-AGEVQH 750 (890)
Q Consensus 677 ~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~-~~~l~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~~ 750 (890)
.|+++.+.... ...+.......++|+.|++++|...... . ...+..+++|++|++++| .++...... .....
T Consensus 169 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~- 246 (319)
T cd00116 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALL- 246 (319)
T ss_pred EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHh-
Confidence 66655554332 1111111111124555555444321110 0 012445677888888877 343211100 00000
Q ss_pred ccCCcccEEEEecCCCCCCC------CcccccCCCCeEEEecCcc
Q 002704 751 FGFHSLQSFEVNFCSKLKDL------TLLVLIPNLKYIAVTDCKA 789 (890)
Q Consensus 751 ~~l~~L~~L~L~~c~~l~~l------~~l~~l~~L~~L~L~~c~~ 789 (890)
...+.|++|++++| .+++. ..+..+++|++|++++|..
T Consensus 247 ~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 247 SPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred ccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 02367888888877 34421 1234457778888777654
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.10 E-value=1e-09 Score=118.13 Aligned_cols=274 Identities=12% Similarity=0.103 Sum_probs=150.9
Q ss_pred CcccchHHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVE-----EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIG 229 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (890)
..|+|++..++.+..++.. .....+.|+|++|+||||+|+.+++.. ...+ .++..+.. .....+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~~-~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPAL-EKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecccc-cChHHHHHHH
Confidence 5689999999998877742 345688999999999999999999987 2222 11222111 1112223333
Q ss_pred HHhcCcc----ccccccCHHHHHHHHHHHhcCCeEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHHhcc--
Q 002704 230 EKIGLLN----ETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVCGLM-- 303 (890)
Q Consensus 230 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~-- 303 (890)
..+.... +.....+ ......+...+.+.+..+|+|+..+...+. ..++ ..+-|..||+...+...+
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~----~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP----PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCC----CceEEeecCCcccCCHHHHH
Confidence 3332211 0000001 112233445555666666776653322221 1111 234556677754332211
Q ss_pred cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHhccCCChhHHHHHHHHHhccc
Q 002704 304 EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMACKKTPEEWSYAIQVLRTSS 383 (890)
Q Consensus 304 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 383 (890)
.....+.+++++.++..+++.+.+.......++ +.+..|++.|+|.|-.+..+...+. .|.... ....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~---~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEIDE---EGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCC
Confidence 123568999999999999999988765544443 7789999999999976655554332 121110 0000
Q ss_pred CCCCCCCcchhchHHhhccCCCCchhhhHHh-hhccCCCCccccHHHHHHHHhhCCCccCccccchhhhHHHHHH-HHHH
Q 002704 384 SQFPGLGNEVYPLLKFSYDNLPNDTIRSCLL-YCCLYPEDCCISKENLVDCWIGEGLLNGSVTLGSHEQGYHIVG-ILVQ 461 (890)
Q Consensus 384 ~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~-~L~~ 461 (890)
-. ...-......+...+..|++. .+..+. ....|+.+ .+..+.+.... ....+.++..++ .|++
T Consensus 238 I~-~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l-----------g~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 238 IT-KEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL-----------GEERDTIEDVYEPYLIQ 303 (328)
T ss_pred CC-HHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH-----------CCCcchHHHHhhHHHHH
Confidence 00 000012334445566777764 555553 66667655 45555543322 112234444566 7999
Q ss_pred hccccccC
Q 002704 462 ACLLEEVD 469 (890)
Q Consensus 462 ~~ll~~~~ 469 (890)
.+|++...
T Consensus 304 ~~li~~~~ 311 (328)
T PRK00080 304 QGFIQRTP 311 (328)
T ss_pred cCCcccCC
Confidence 99997654
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=1.5e-10 Score=125.41 Aligned_cols=231 Identities=20% Similarity=0.151 Sum_probs=129.8
Q ss_pred EEeccCCCccccChhhhccCCCCcEEEeecCCCC-----cccCccccCccCCCEEeccCCCccc-------cchHHhcCC
Q 002704 542 LFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGL-----LELPSGISKLVSLEHLDLSTSLISE-------IPEELKALV 609 (890)
Q Consensus 542 L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i-----~~lp~~i~~L~~L~~L~L~~~~i~~-------lp~~l~~l~ 609 (890)
|+|..+.....--..++..+.+|++|+++ ++.+ ..++..+...++|++|+++++.+.. ++..+.+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~-~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLE-GNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeec-CCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 45554444422223447778889999999 5555 3466777788889999999987653 345677888
Q ss_pred cCCEeeccCCCCccccChhhhcCCcc---CcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCC-CCCceEEEEecCh
Q 002704 610 NLKCLNLENTGLLLKIPLQLISHFSR---LHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGL-KHLEVLSLTLGSS 685 (890)
Q Consensus 610 ~L~~L~l~~~~~~~~~p~~~i~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 685 (890)
+|++|++++|......+.. +..+.+ |++|++++|.....+ .......+..+ ++|+.|+++.+..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~-----------~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 82 GLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGLGDRG-----------LRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred ceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCccchHH-----------HHHHHHHHHhCCCCceEEEcCCCcC
Confidence 9999999998754434433 444444 999999988764200 01123455666 8889999988765
Q ss_pred hh--hHhhhhhcccccccceeeecccCCCcee--c-ccCcccccCccEEEeecCCCcceEEecccCccccccCCcccEEE
Q 002704 686 RA--LQSFLNSHMLRSCTRAMLLQDFKGSTMV--D-VSGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFE 760 (890)
Q Consensus 686 ~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~-~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~l~~L~~L~ 760 (890)
.. ...+.........++.|++.++.-.... . ...+..+++|++|++++| .+......... .....+++|++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~-~~~~~~~~L~~L~ 227 (319)
T cd00116 150 EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALA-ETLASLKSLEVLN 227 (319)
T ss_pred CchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHH-HHhcccCCCCEEe
Confidence 52 2222222222235666666655322110 0 011233456777777666 33221110000 0001356667777
Q ss_pred EecCCCCCCC--Ccc-c----ccCCCCeEEEecCc
Q 002704 761 VNFCSKLKDL--TLL-V----LIPNLKYIAVTDCK 788 (890)
Q Consensus 761 L~~c~~l~~l--~~l-~----~l~~L~~L~L~~c~ 788 (890)
+++|+ +.+. ..+ . ..+.|++|++++|.
T Consensus 228 ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 228 LGDNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred cCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 76663 4431 111 1 13566666666654
No 32
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.98 E-value=2.8e-08 Score=111.75 Aligned_cols=292 Identities=15% Similarity=0.158 Sum_probs=186.9
Q ss_pred cccchHHHHHHHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhc
Q 002704 156 TMVGLQSQLEEVWRCLVE-EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIG 233 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~ 233 (890)
..+-|.. +++.|.. .+.+.+.|..++|.|||||+.+..... ..-..+.|.+..... ++..+..-++..++
T Consensus 20 ~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 20 NYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 3345554 4555544 478999999999999999999998733 344578999988765 56777777777765
Q ss_pred Cccc-----------cccccCHHHHHHHHHHHhc--CCeEEEEEecCC---CccccccccccCCCCCCCCcEEEEecCCH
Q 002704 234 LLNE-----------TWKSRRIEQKALDIFRILR--GKKFVVLLDDIW---QRVDLTKVGVPLPSSQTSASKVVFTTRSE 297 (890)
Q Consensus 234 ~~~~-----------~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~---~~~~~~~~~~~l~~~~~~gs~iivTtR~~ 297 (890)
.-.+ +....+...+...+...+. .++..+||||.. +..--..+...+.... .+-..|||||+.
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P-~~l~lvv~SR~r 170 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP-ENLTLVVTSRSR 170 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC-CCeEEEEEeccC
Confidence 3211 1123345556666666554 368999999963 2222223333333333 788999999987
Q ss_pred HHHhc--cc-CCceeecC----CCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHhccCCChh
Q 002704 298 EVCGL--ME-AHKKFKVQ----CLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMACKKTPE 370 (890)
Q Consensus 298 ~v~~~--~~-~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~ 370 (890)
.-+.. +. .+..+++. .++.+|+.++|....+..-. +.-.+.+....+|=+-|+..++=.++.+.+.+
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld------~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD------AADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC------hHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 43221 11 11223332 58899999999987643321 25678899999999999998888877434433
Q ss_pred HHHHHHHHHhcccCCCCCCCcchhc-hHHhhccCCCCchhhhHHhhhccCCCCccccHHHHHHHHhhCCCccCccccchh
Q 002704 371 EWSYAIQVLRTSSSQFPGLGNEVYP-LLKFSYDNLPNDTIRSCLLYCCLYPEDCCISKENLVDCWIGEGLLNGSVTLGSH 449 (890)
Q Consensus 371 ~w~~~~~~l~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~ 449 (890)
.-...+. +..+-+.. ...--++.||++ +|..++-||+++.- -..|+..- +.+
T Consensus 245 q~~~~Ls----------G~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f----~~eL~~~L------------tg~ 297 (894)
T COG2909 245 QSLRGLS----------GAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRF----NDELCNAL------------TGE 297 (894)
T ss_pred HHhhhcc----------chHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHh----hHHHHHHH------------hcC
Confidence 2222111 00011111 122346889996 99999999998642 12233221 234
Q ss_pred hhHHHHHHHHHHhccccc-c--CCCcEEehHHHHHHHHHHHhh
Q 002704 450 EQGYHIVGILVQACLLEE-V--DEDEVKMHDVIRDMALWLACD 489 (890)
Q Consensus 450 ~~~~~~~~~L~~~~ll~~-~--~~~~~~mHdlv~~~~~~~~~~ 489 (890)
+.+...+++|.+++|+-. - +...|+.|.+..||-+.....
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 557778999999998753 2 477899999999998866544
No 33
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.98 E-value=9.7e-09 Score=122.47 Aligned_cols=308 Identities=15% Similarity=0.172 Sum_probs=179.9
Q ss_pred ccchHHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCC---HHHHHHHHHH
Q 002704 157 MVGLQSQLEEVWRCLVE---EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLR---LESIQEVIGE 230 (890)
Q Consensus 157 ~~Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~---~~~~~~~i~~ 230 (890)
++||+.+++.|...+.+ +...++.+.|.+|||||+++++|.+...+.+..|-...+-....+.. ..+..+++..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999999865 56679999999999999999999988733222222111111222222 3334444444
Q ss_pred HhcCc-------------------cc------------------c--ccccCHHHHH-----HHHHHHh-cCCeEEEEEe
Q 002704 231 KIGLL-------------------NE------------------T--WKSRRIEQKA-----LDIFRIL-RGKKFVVLLD 265 (890)
Q Consensus 231 ~l~~~-------------------~~------------------~--~~~~~~~~~~-----~~l~~~l-~~~~~LlvlD 265 (890)
++... .. . ......+.+. ..+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 44110 00 0 0001111111 1122223 3469999999
Q ss_pred cC-CCccc-cccc---cccCCCCCCCCcEEEEec--CCH--HHHhcccCCceeecCCCChhhHHHHHHHHhcCCccCCCc
Q 002704 266 DI-WQRVD-LTKV---GVPLPSSQTSASKVVFTT--RSE--EVCGLMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHP 336 (890)
Q Consensus 266 dv-~~~~~-~~~~---~~~l~~~~~~gs~iivTt--R~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~ 336 (890)
|+ |-+.. +.-+ .....-+......|..+. +.. .+.........|.|.||+..+...+.....+......
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~-- 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP-- 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc--
Confidence 98 53321 1111 111110000112233322 222 1222233457899999999999999999887643222
Q ss_pred cHHHHHHHHHhHhCCchhHHHHHHHHhccC------CChhHHHHHHHHHhcccCCCCCCCcchhchHHhhccCCCCchhh
Q 002704 337 YILELAQTVTKECGGLPLALITIGRAMACK------KTPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNDTIR 410 (890)
Q Consensus 337 ~l~~~~~~i~~~c~GlPlai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k 410 (890)
.+..+.|+++..|+|+.+..+-..+... .+...|+.-...+. ..+..+.+...+..-.+.||.. .+
T Consensus 240 --~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-----~~~~~~~vv~~l~~rl~kL~~~-t~ 311 (849)
T COG3899 240 --APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-----ILATTDAVVEFLAARLQKLPGT-TR 311 (849)
T ss_pred --chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-----CchhhHHHHHHHHHHHhcCCHH-HH
Confidence 3789999999999999999988888763 23344543222221 1222234666788899999985 99
Q ss_pred hHHhhhccCCCCccccHHHHHHHHhhCCCccCccccchhhhHHHHHHHHHHhcccccc-------CCC---cEEehHHHH
Q 002704 411 SCLLYCCLYPEDCCISKENLVDCWIGEGLLNGSVTLGSHEQGYHIVGILVQACLLEEV-------DED---EVKMHDVIR 480 (890)
Q Consensus 411 ~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~-------~~~---~~~mHdlv~ 480 (890)
..+...|++...|. ...|...+-. .....+....+.|....++-.. ... +-..||+|+
T Consensus 312 ~Vl~~AA~iG~~F~--l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 312 EVLKAAACIGNRFD--LDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHHhCccCC--HHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 99999999976554 4444444421 2344555566666666655422 122 236899999
Q ss_pred HHHHHH
Q 002704 481 DMALWL 486 (890)
Q Consensus 481 ~~~~~~ 486 (890)
+.|...
T Consensus 380 qaaY~~ 385 (849)
T COG3899 380 QAAYNL 385 (849)
T ss_pred HHHhcc
Confidence 888544
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.97 E-value=8.7e-11 Score=119.39 Aligned_cols=246 Identities=19% Similarity=0.161 Sum_probs=164.4
Q ss_pred ccccccceEEEEccccccccccC--CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcc-cCccccCcc
Q 002704 510 DVIEWEKLRRLSLMENQIENLSE--VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLE-LPSGISKLV 586 (890)
Q Consensus 510 ~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~-lp~~i~~L~ 586 (890)
.+..++++|+|++++|.|+.+.+ |.+++.|-.|.+.+++.+..+|.+.|+++..|+-|.+. -+.+.. ....+..|+
T Consensus 86 aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN-an~i~Cir~~al~dL~ 164 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN-ANHINCIRQDALRDLP 164 (498)
T ss_pred hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC-hhhhcchhHHHHHHhh
Confidence 46678899999999999988744 88899998888888666778999999999999999998 444444 456788999
Q ss_pred CCCEEeccCCCccccch-HHhcCCcCCEeeccCCCCc------------cccChhhhcCCccCcEeeccCCCcCccC---
Q 002704 587 SLEHLDLSTSLISEIPE-ELKALVNLKCLNLENTGLL------------LKIPLQLISHFSRLHVLRMFGNGYFSCG--- 650 (890)
Q Consensus 587 ~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~------------~~~p~~~i~~l~~L~~L~l~~~~~~~~~--- 650 (890)
+|..|.+.+|.+..++. .+..+..++++.+..|... ...|.. ++......-..+.+..+..-.
T Consensus 165 ~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~k 243 (498)
T KOG4237|consen 165 SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARK 243 (498)
T ss_pred hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-cccceecchHHHHHHHhcccchhh
Confidence 99999999999999987 7888999999988766421 112211 233332222222222111000
Q ss_pred ------CCC--CCccccCCCcccHHHhcCCCCCceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCccc
Q 002704 651 ------LYP--EDSVLFGGGELLVEELLGLKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLAN 722 (890)
Q Consensus 651 ------~~~--~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 722 (890)
..+ ....-++.......-+..|++|++|+++++.+..+..-.. .....++.|.+..+.-.. +.-..+..
T Consensus 244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF--e~~a~l~eL~L~~N~l~~-v~~~~f~~ 320 (498)
T KOG4237|consen 244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF--EGAAELQELYLTRNKLEF-VSSGMFQG 320 (498)
T ss_pred hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh--cchhhhhhhhcCcchHHH-HHHHhhhc
Confidence 000 0011122244455678899999999999988776553211 112266667766543221 12123667
Q ss_pred ccCccEEEeecCCCcceEEecccCccccccCCcccEEEEecCCC
Q 002704 723 LKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVNFCSK 766 (890)
Q Consensus 723 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~c~~ 766 (890)
+..|+.|++.+| .++.+.+..+. .+.+|.+|.|-.+|.
T Consensus 321 ls~L~tL~L~~N-~it~~~~~aF~-----~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 321 LSGLKTLSLYDN-QITTVAPGAFQ-----TLFSLSTLNLLSNPF 358 (498)
T ss_pred cccceeeeecCC-eeEEEeccccc-----ccceeeeeehccCcc
Confidence 888999999998 78777665553 578888888877653
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=8.2e-10 Score=104.61 Aligned_cols=117 Identities=33% Similarity=0.435 Sum_probs=33.4
Q ss_pred cccccccCCCCCCcceEEEeccCCCccccChhhhc-cCCCCcEEEeecCCCCcccCccccCccCCCEEeccCCCccccch
Q 002704 525 NQIENLSEVPTCPHLLTLFLNNDGLLRIINSDFLQ-SMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTSLISEIPE 603 (890)
Q Consensus 525 ~~~~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 603 (890)
+.++..+.+.++.+++.|+|.+|.+.. +. . ++ .+.+|++|+|+ ++.++.++ .+..+++|++|++++|.|+.++.
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~-Ie-~-L~~~l~~L~~L~Ls-~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQIST-IE-N-LGATLDKLEVLDLS-NNQITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp -------------------------------S---TT-TT--EEE-T-TS--S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccccccccc-cc-c-hhhhhcCCCEEECC-CCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 344445555566667777777665543 22 1 33 46677777777 66666664 36667777777777777777765
Q ss_pred HH-hcCCcCCEeeccCCCCccccCh-hhhcCCccCcEeeccCCCcC
Q 002704 604 EL-KALVNLKCLNLENTGLLLKIPL-QLISHFSRLHVLRMFGNGYF 647 (890)
Q Consensus 604 ~l-~~l~~L~~L~l~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~~ 647 (890)
.+ ..+++|++|++++|.. ..+.. ..++.+++|++|++.+|++.
T Consensus 82 ~l~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred chHHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCccc
Confidence 44 3577777777777752 22211 22566777777777777664
No 36
>PF05729 NACHT: NACHT domain
Probab=98.95 E-value=4.7e-09 Score=101.38 Aligned_cols=142 Identities=16% Similarity=0.256 Sum_probs=90.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCC----CceEEEEEeCCCCCHH---HHHHHHHHHhcCccccccccCHHHHHH
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTN----FDLVILVVVSKDLRLE---SIQEVIGEKIGLLNETWKSRRIEQKAL 249 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 249 (890)
+++.|+|.+|+||||+++.++.... .... +..++|+......... .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 5799999999999999999998873 2221 4567777776654432 34444444433211 11111
Q ss_pred HHHHH-hcCCeEEEEEecCCCccc---------ccccc-ccCCCCCCCCcEEEEecCCHHH---HhcccCCceeecCCCC
Q 002704 250 DIFRI-LRGKKFVVLLDDIWQRVD---------LTKVG-VPLPSSQTSASKVVFTTRSEEV---CGLMEAHKKFKVQCLS 315 (890)
Q Consensus 250 ~l~~~-l~~~~~LlvlDdv~~~~~---------~~~~~-~~l~~~~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~ 315 (890)
.+... -..++++||+|++++... +..+. ..+......+.++|||+|.... .........+.+.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 12122 257899999999965432 11222 2223312278999999998765 3334445689999999
Q ss_pred hhhHHHHHHHHh
Q 002704 316 GNDAWELFRQKV 327 (890)
Q Consensus 316 ~~~~~~lf~~~~ 327 (890)
+++..+++++.+
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.92 E-value=4.9e-09 Score=106.11 Aligned_cols=156 Identities=13% Similarity=0.174 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
..+.+.++|++|+|||+|++.+++... .....+.|+.+.... .... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhhH-----------------------HHHhh
Confidence 446789999999999999999999872 223345666553110 0000 11111
Q ss_pred hcCCeEEEEEecCCCc---ccccc-ccccCCCCCCCCcEEE-EecCC---------HHHHhcccCCceeecCCCChhhHH
Q 002704 255 LRGKKFVVLLDDIWQR---VDLTK-VGVPLPSSQTSASKVV-FTTRS---------EEVCGLMEAHKKFKVQCLSGNDAW 320 (890)
Q Consensus 255 l~~~~~LlvlDdv~~~---~~~~~-~~~~l~~~~~~gs~ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~ 320 (890)
+. +.-+|||||+|.. ..|+. +...+......|..+| +|+.. +.+...+.....+++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 2348999999853 33432 2222222221355554 45544 355666667789999999999999
Q ss_pred HHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHh
Q 002704 321 ELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAM 363 (890)
Q Consensus 321 ~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l 363 (890)
+++.+.+.......++ +...-|++++.|..-++..+-..|
T Consensus 168 ~iL~~~a~~~~l~l~~---~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 168 IVLQRNAYQRGIELSD---EVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHHHHHH
Confidence 9999988755443333 788889999988877665544433
No 38
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.92 E-value=1e-07 Score=108.09 Aligned_cols=209 Identities=13% Similarity=0.109 Sum_probs=125.4
Q ss_pred CCcccchHHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHhhccCC--CCCC--ceEEEEEeCCCCCHHHH
Q 002704 154 EPTMVGLQSQLEEVWRCLVE-----EPVGIVGLYGMGGVGKTTLLTHINNKFLGS--PTNF--DLVILVVVSKDLRLESI 224 (890)
Q Consensus 154 ~~~~~Gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f--~~~~wv~~s~~~~~~~~ 224 (890)
+..+.|||+++++|...|.. ....++.|+|++|+|||+.++.|.+.+... +... -.+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 35678999999999988853 233578899999999999999998776211 1122 23677888777788899
Q ss_pred HHHHHHHhcCccccccccCHHHHHHHHHHHhc---CCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEE--ecCCH
Q 002704 225 QEVIGEKIGLLNETWKSRRIEQKALDIFRILR---GKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVF--TTRSE 297 (890)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iiv--TtR~~ 297 (890)
+..|++++....+. .+....+....++..+. +...+||||||+... .-+.+...+......+++|+| +|...
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999988543321 23334455556665552 234689999996432 111121111100113445444 34322
Q ss_pred HH--------HhcccCCceeecCCCChhhHHHHHHHHhcCCc-cCCCccHHHHHHHHHhHhCCchhHHHHHHHHhc
Q 002704 298 EV--------CGLMEAHKKFKVQCLSGNDAWELFRQKVGEET-LNCHPYILELAQTVTKECGGLPLALITIGRAMA 364 (890)
Q Consensus 298 ~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~ 364 (890)
+. ...++ ...+...|++.++..+++..++.... .-.+..++-+|+.+++..|-.-.|+.++-.+..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 21 22222 23477899999999999999986432 122223344455555444555666666655543
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.91 E-value=7.3e-11 Score=121.00 Aligned_cols=294 Identities=17% Similarity=0.171 Sum_probs=161.5
Q ss_pred CcceEEEeccCCCccccCh-hhhccCCCCcEEEeecCCCCcc--cCccccCccCCCEEeccCC-Cccc--cchHHhcCCc
Q 002704 537 PHLLTLFLNNDGLLRIINS-DFLQSMPSLKVLNLSRYMGLLE--LPSGISKLVSLEHLDLSTS-LISE--IPEELKALVN 610 (890)
Q Consensus 537 ~~Lr~L~L~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~i~~--lp~~i~~L~~L~~L~L~~~-~i~~--lp~~l~~l~~ 610 (890)
..|+.|.+.++...+.-+. .+...++++..|++.+|..++. +-+.-..+.+|++|++..| .|+. +-.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4678888887766554432 3456678888888887765553 1222246778888888875 5553 2223456788
Q ss_pred CCEeeccCCCCccccC-hhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCCCceEEEEecChhhhH
Q 002704 611 LKCLNLENTGLLLKIP-LQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKHLEVLSLTLGSSRALQ 689 (890)
Q Consensus 611 L~~L~l~~~~~~~~~p-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 689 (890)
|.+|+++.|..+..-. .....++.+|+.+...+|.-.. .+.....-+.+..+-.+++..+..-+-.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~-------------le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE-------------LEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc-------------HHHHHHHhccChHhhccchhhhccccch
Confidence 8888888875433200 0124555666666665553321 0011111112223333333222222222
Q ss_pred hhhhhcccccccceeeecccCCCceecccCc-ccccCccEEEeecCCCcceEEecccCccccccCCcccEEEEecCCCCC
Q 002704 690 SFLNSHMLRSCTRAMLLQDFKGSTMVDVSGL-ANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVNFCSKLK 768 (890)
Q Consensus 690 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~ 768 (890)
.+......+..++.|..++|...+...+..+ .+.++|+.|.+++|..+++......+ .+.+.|+.+++..|....
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLEECGLIT 360 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----cCChhhhhhcccccceeh
Confidence 2333333445667777777766555444333 34577888888887665554322222 356778888887775444
Q ss_pred CC--C-cccccCCCCeEEEecCccchhhhccccccCCCCcCcccceeccccccccccccCC-CCCCCCccEEeecCcccC
Q 002704 769 DL--T-LLVLIPNLKYIAVTDCKAMEEIISVGEFAGNPNAFAKLQYLRIGNLPNLKSIYLK-PLPFPCLKKLTVSDCYEL 844 (890)
Q Consensus 769 ~l--~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~L~~l~~~-~~~~~~L~~L~i~~C~~L 844 (890)
+- - .-.++|.|+.|.|++|..+++.-. -.......+...|..|.+.+||.++.-... ...+++|+.+++.+|...
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~gi-~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDEGI-RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhhhh-hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 32 1 123567788888888776655400 001112245667777777777776644332 233567777777777665
Q ss_pred CCCC
Q 002704 845 KKLP 848 (890)
Q Consensus 845 ~~Lp 848 (890)
.+=|
T Consensus 440 tk~~ 443 (483)
T KOG4341|consen 440 TKEA 443 (483)
T ss_pred hhhh
Confidence 5543
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.8e-10 Score=115.71 Aligned_cols=210 Identities=20% Similarity=0.212 Sum_probs=98.7
Q ss_pred CCCCcceEEEeccCCCccccCh-hhhccCCCCcEEEeecCCCCc---ccCccccCccCCCEEeccCCCccccch--HHhc
Q 002704 534 PTCPHLLTLFLNNDGLLRIINS-DFLQSMPSLKVLNLSRYMGLL---ELPSGISKLVSLEHLDLSTSLISEIPE--ELKA 607 (890)
Q Consensus 534 ~~~~~Lr~L~L~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~i~---~lp~~i~~L~~L~~L~L~~~~i~~lp~--~l~~ 607 (890)
+++++||...|.++.. ...+. .....|++++.|||++ +.+. .+-.-+..|++|+.|+|+.|++..... .-..
T Consensus 118 sn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCccc-cccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3455666666664332 22221 2345566666666662 2222 222333456666666666665442211 1123
Q ss_pred CCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCCCceEEEEecChhh
Q 002704 608 LVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKHLEVLSLTLGSSRA 687 (890)
Q Consensus 608 l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 687 (890)
++.|+.|.|+.|.....--..+...+++|+.|++..|.... .......-+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~---------------~~~~~~~i~~-------------- 246 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL---------------IKATSTKILQ-------------- 246 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc---------------eecchhhhhh--------------
Confidence 44555555555543322111223445555555555542110 0001111122
Q ss_pred hHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcceEEecccCcc-ccccCCcccEEEEecCCC
Q 002704 688 LQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEV-QHFGFHSLQSFEVNFCSK 766 (890)
Q Consensus 688 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~-~~~~l~~L~~L~L~~c~~ 766 (890)
.|+.|+|+++.......+.....++.|+.|+++.| ++.++..--.... ....|++|++|++..++
T Consensus 247 ------------~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~- 312 (505)
T KOG3207|consen 247 ------------TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN- 312 (505)
T ss_pred ------------HHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-
Confidence 44445555444444333334556777777777776 5555432111000 01357888888888874
Q ss_pred CCCC---CcccccCCCCeEEEecCc
Q 002704 767 LKDL---TLLVLIPNLKYIAVTDCK 788 (890)
Q Consensus 767 l~~l---~~l~~l~~L~~L~L~~c~ 788 (890)
+.+. ..+..+++|+.|.+..++
T Consensus 313 I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 313 IRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccccccchhhccchhhhhhccccc
Confidence 4333 334456677777665443
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=4.4e-09 Score=99.70 Aligned_cols=129 Identities=32% Similarity=0.392 Sum_probs=54.4
Q ss_pred cccccceEEEEccccccccccCCC-CCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccc-cCccCC
Q 002704 511 VIEWEKLRRLSLMENQIENLSEVP-TCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGI-SKLVSL 588 (890)
Q Consensus 511 ~~~~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i-~~L~~L 588 (890)
.....+++.|++.+|.+..+..+. .+.+|++|++++|.+. .++. +..+++|++|+++ ++.++.++..+ ..+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~-~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLS-NNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE---SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccC-CCCCCccccchHHhCCcC
Confidence 334457899999999999888876 5899999999988775 4443 7889999999999 88888887665 468999
Q ss_pred CEEeccCCCccccc--hHHhcCCcCCEeeccCCCCccccC---hhhhcCCccCcEeeccCC
Q 002704 589 EHLDLSTSLISEIP--EELKALVNLKCLNLENTGLLLKIP---LQLISHFSRLHVLRMFGN 644 (890)
Q Consensus 589 ~~L~L~~~~i~~lp--~~l~~l~~L~~L~l~~~~~~~~~p---~~~i~~l~~L~~L~l~~~ 644 (890)
++|++++|+|..+- ..+..+++|+.|++.+|..... + ..++..+++|+.|+-...
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 99999999887553 3578899999999999975432 2 235678999999987543
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.80 E-value=2.1e-07 Score=96.23 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=100.8
Q ss_pred HHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCccccccccCHH
Q 002704 167 VWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNETWKSRRIE 245 (890)
Q Consensus 167 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~ 245 (890)
|...+..+.+.....||++|+||||||+.++... ...|.. ++-.. .+.++ +.|++...
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~-----~sAv~~gvkdl-r~i~e~a~------------ 97 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEA-----LSAVTSGVKDL-REIIEEAR------------ 97 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEE-----eccccccHHHH-HHHHHHHH------------
Confidence 3444566888899999999999999999999876 445542 22222 22222 22222110
Q ss_pred HHHHHHHHHhcCCeEEEEEecCC--CccccccccccCCCCCCCCcEEEE--ecCCHHH---HhcccCCceeecCCCChhh
Q 002704 246 QKALDIFRILRGKKFVVLLDDIW--QRVDLTKVGVPLPSSQTSASKVVF--TTRSEEV---CGLMEAHKKFKVQCLSGND 318 (890)
Q Consensus 246 ~~~~~l~~~l~~~~~LlvlDdv~--~~~~~~~~~~~l~~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~ 318 (890)
.....+++.+|++|+|. +..+.+.+.. ... +|.-|+| ||.|+.. ....+...++.+++|+.++
T Consensus 98 ------~~~~~gr~tiLflDEIHRfnK~QQD~lLp---~vE-~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~d 167 (436)
T COG2256 98 ------KNRLLGRRTILFLDEIHRFNKAQQDALLP---HVE-NGTIILIGATTENPSFELNPALLSRARVFELKPLSSED 167 (436)
T ss_pred ------HHHhcCCceEEEEehhhhcChhhhhhhhh---hhc-CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHH
Confidence 12334899999999994 3344444433 333 6666776 7777643 2334556799999999999
Q ss_pred HHHHHHHHhcCCccCCC---ccH-HHHHHHHHhHhCCchhHH
Q 002704 319 AWELFRQKVGEETLNCH---PYI-LELAQTVTKECGGLPLAL 356 (890)
Q Consensus 319 ~~~lf~~~~~~~~~~~~---~~l-~~~~~~i~~~c~GlPlai 356 (890)
..+++.+.+......-. ..+ ++....+++.++|--.++
T Consensus 168 i~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 168 IKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred HHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 99999985432221111 112 357778899999987654
No 43
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.79 E-value=4.2e-08 Score=100.02 Aligned_cols=170 Identities=14% Similarity=0.106 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccc
Q 002704 160 LQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETW 239 (890)
Q Consensus 160 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 239 (890)
.+..++.+.+++.......+.|+|++|+|||++|+.+++... ......++++++.-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----------
Confidence 455677777776666678999999999999999999998762 2233455665433211 00
Q ss_pred cccCHHHHHHHHHHHhcCCeEEEEEecCCCcc---cc-ccccccCCCCCCCCcEEEEecCCHH---------HHhcccCC
Q 002704 240 KSRRIEQKALDIFRILRGKKFVVLLDDIWQRV---DL-TKVGVPLPSSQTSASKVVFTTRSEE---------VCGLMEAH 306 (890)
Q Consensus 240 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~~-~~~~~~l~~~~~~gs~iivTtR~~~---------v~~~~~~~ 306 (890)
..+...+.+. -+|||||++... .| ..+...+......+.++|+||+... +...+...
T Consensus 82 ---------~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 0111112222 389999996432 22 2233222221113457888887532 22233334
Q ss_pred ceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHH
Q 002704 307 KKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRA 362 (890)
Q Consensus 307 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~ 362 (890)
..+++.+++.++...++...+.......++ +..+.+++.+.|.|..+..+...
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQLPD---EVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHHHHH
Confidence 688999999999999998765433222232 66788888899999877665443
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.4e-09 Score=112.44 Aligned_cols=161 Identities=22% Similarity=0.228 Sum_probs=113.4
Q ss_pred cccceEEEEcccccccccc---CCCCCCcceEEEeccCCCccccC-hhhhccCCCCcEEEeecCCCCcccCcc--ccCcc
Q 002704 513 EWEKLRRLSLMENQIENLS---EVPTCPHLLTLFLNNDGLLRIIN-SDFLQSMPSLKVLNLSRYMGLLELPSG--ISKLV 586 (890)
Q Consensus 513 ~~~~l~~L~l~~~~~~~l~---~~~~~~~Lr~L~L~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~i~~lp~~--i~~L~ 586 (890)
.+++++.+++.+..+...+ ....|++++.|+|+.|-+..-.+ ..+..++++|+.|+|+.|. +...-++ -..+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhh
Confidence 3567888888888776655 36789999999999876543222 3457889999999999443 3222111 23678
Q ss_pred CCCEEeccCCCcc--ccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcc
Q 002704 587 SLEHLDLSTSLIS--EIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGEL 664 (890)
Q Consensus 587 ~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (890)
+|+.|.|+.|.++ .+-..+..+++|+.|++.+|.....-... ...+..|+.|++++|.+..+ .
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~--------------~ 262 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF--------------D 262 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc--------------c
Confidence 9999999999887 45556678899999999998422211111 34567899999999988642 3
Q ss_pred cHHHhcCCCCCceEEEEecChhhhH
Q 002704 665 LVEELLGLKHLEVLSLTLGSSRALQ 689 (890)
Q Consensus 665 ~~~~l~~l~~L~~L~l~~~~~~~~~ 689 (890)
.....+.++.|+.|+++.++..++.
T Consensus 263 ~~~~~~~l~~L~~Lnls~tgi~si~ 287 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLNLSSTGIASIA 287 (505)
T ss_pred cccccccccchhhhhccccCcchhc
Confidence 3455677888888888877666543
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=4.7e-10 Score=119.34 Aligned_cols=194 Identities=24% Similarity=0.328 Sum_probs=139.2
Q ss_pred ceEEEEccccccccccC-CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEecc
Q 002704 516 KLRRLSLMENQIENLSE-VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLS 594 (890)
Q Consensus 516 ~l~~L~l~~~~~~~l~~-~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~ 594 (890)
.....+++.|.+..+|. +..|..|..|.+..|.+ ..+|.. ++++..|.||||+ -+.+..+|..++.|+ |+.|-++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~-i~~L~~lt~l~ls-~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEA-ICNLEALTFLDLS-SNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchh-hhhhhHHHHhhhc-cchhhcCChhhhcCc-ceeEEEe
Confidence 34456777787777765 66778888888886554 567776 7889999999999 778888999999886 9999999
Q ss_pred CCCccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCC
Q 002704 595 TSLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKH 674 (890)
Q Consensus 595 ~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 674 (890)
+|+++.+|..++.+..|.+||.+.|. +..+|.. ++.+.+|+.|.+..|.... .+.++..|+
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~~----------------lp~El~~Lp- 212 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLED----------------LPEELCSLP- 212 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhhh----------------CCHHHhCCc-
Confidence 99999999999988999999999885 7788877 7889999999988877643 455666443
Q ss_pred CceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcceEEecccCccccccCC
Q 002704 675 LEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFH 754 (890)
Q Consensus 675 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~l~ 754 (890)
|..|+++.|.+..++ + .+.+|+.|++|-|.+| -+++-|..... ....+
T Consensus 213 Li~lDfScNkis~iP---------------------------v-~fr~m~~Lq~l~LenN-PLqSPPAqIC~---kGkVH 260 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLP---------------------------V-DFRKMRHLQVLQLENN-PLQSPPAQICE---KGKVH 260 (722)
T ss_pred eeeeecccCceeecc---------------------------h-hhhhhhhheeeeeccC-CCCCChHHHHh---cccee
Confidence 556666655443322 1 2556777888888776 34443322211 01234
Q ss_pred cccEEEEecC
Q 002704 755 SLQSFEVNFC 764 (890)
Q Consensus 755 ~L~~L~L~~c 764 (890)
=.++|+...|
T Consensus 261 IFKyL~~qA~ 270 (722)
T KOG0532|consen 261 IFKYLSTQAC 270 (722)
T ss_pred eeeeecchhc
Confidence 4567777777
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.75 E-value=5.2e-10 Score=114.84 Aligned_cols=296 Identities=15% Similarity=0.151 Sum_probs=157.3
Q ss_pred ceEEEEccccccccccC----CCCCCcceEEEeccCCCccccC-hhhhccCCCCcEEEeecCCCCccc--CccccCccCC
Q 002704 516 KLRRLSLMENQIENLSE----VPTCPHLLTLFLNNDGLLRIIN-SDFLQSMPSLKVLNLSRYMGLLEL--PSGISKLVSL 588 (890)
Q Consensus 516 ~l~~L~l~~~~~~~l~~----~~~~~~Lr~L~L~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~i~~l--p~~i~~L~~L 588 (890)
.++.|++.++.-....+ ..+|++++.|.+.+|..+.... .++-..++.|++|+|..|..++.. -.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35566666554322222 3467777777777665433221 222345677777777755665542 2233456777
Q ss_pred CEEeccCC-Ccc--ccchHHhcCCcCCEeeccCCCCccccChhhh----cCCccCcEeeccCCCcCccCCCCCCccccCC
Q 002704 589 EHLDLSTS-LIS--EIPEELKALVNLKCLNLENTGLLLKIPLQLI----SHFSRLHVLRMFGNGYFSCGLYPEDSVLFGG 661 (890)
Q Consensus 589 ~~L~L~~~-~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 661 (890)
.||++++| .|+ .+-.-...+.+|+.+.+.||.. .+.+.+ +.+.-+-++++..|...+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lT------------- 282 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLT------------- 282 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhcccc-------------
Confidence 77777777 444 2333345556666676666632 222212 233445555555554432
Q ss_pred CcccHHHhcCCCCCceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCc-ccccCccEEEeecCCCcceE
Q 002704 662 GELLVEELLGLKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGL-ANLKQLKRLRISDCYELVEL 740 (890)
Q Consensus 662 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l 740 (890)
+.....--..+.+|+.|..+.+....-..+........+|+.|.+..|...+..-+..+ .+.+.|+.+++.+|....+.
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 22222223345667777666554433333333344445777777777765444433333 24567777777777433322
Q ss_pred EecccCccccccCCcccEEEEecCCCCCCCC------cccccCCCCeEEEecCccchhhhccccccCCCCcCcccceecc
Q 002704 741 KIDYAGEVQHFGFHSLQSFEVNFCSKLKDLT------LLVLIPNLKYIAVTDCKAMEEIISVGEFAGNPNAFAKLQYLRI 814 (890)
Q Consensus 741 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~------~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~f~~L~~L~l 814 (890)
... ....+++.|+.|.|++|..+++.. .-..+..|+.|.|++|+.+++-.. .....+++|+.+++
T Consensus 363 tL~----sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-----e~l~~c~~Leri~l 433 (483)
T KOG4341|consen 363 TLA----SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-----EHLSICRNLERIEL 433 (483)
T ss_pred hHh----hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-----HHHhhCcccceeee
Confidence 111 111356777777777776665541 123456777777777776655422 11245667777777
Q ss_pred ccccccccccCC--CCCCCCccEE
Q 002704 815 GNLPNLKSIYLK--PLPFPCLKKL 836 (890)
Q Consensus 815 ~~~~~L~~l~~~--~~~~~~L~~L 836 (890)
.+|.....-++. ...+|+++..
T Consensus 434 ~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 434 IDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred echhhhhhhhhHHHHhhCccceeh
Confidence 777665544332 2344544443
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=7.3e-10 Score=108.50 Aligned_cols=85 Identities=31% Similarity=0.230 Sum_probs=46.2
Q ss_pred CCEEeccCCCcc--ccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCccc
Q 002704 588 LEHLDLSTSLIS--EIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELL 665 (890)
Q Consensus 588 L~~L~L~~~~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 665 (890)
||+|||+.+.|+ .+-.-++.+.+|+.|.|.++.....+-.. +.+-.+|+.|+++.|+-.+ ....
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t-------------~n~~ 252 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT-------------ENAL 252 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc-------------hhHH
Confidence 555566555554 34444555666666666666544434333 5555666666666655432 1222
Q ss_pred HHHhcCCCCCceEEEEecChh
Q 002704 666 VEELLGLKHLEVLSLTLGSSR 686 (890)
Q Consensus 666 ~~~l~~l~~L~~L~l~~~~~~ 686 (890)
-.-+.+|+.|..|+++|+...
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHHhhhhHhhcCchHhhcc
Confidence 334455666666666666443
No 48
>PRK08727 hypothetical protein; Validated
Probab=98.66 E-value=2.8e-07 Score=93.58 Aligned_cols=167 Identities=11% Similarity=0.068 Sum_probs=99.8
Q ss_pred ccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCcc
Q 002704 157 MVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLN 236 (890)
Q Consensus 157 ~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 236 (890)
++|-...+..+.....+.....+.|+|..|+|||+|++.+++... .....+.++++.+ ....+..
T Consensus 22 ~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~~------ 86 (233)
T PRK08727 22 IAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLRD------ 86 (233)
T ss_pred cCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHHH------
Confidence 334444444444443333445799999999999999999988862 2233566665322 1111110
Q ss_pred ccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc---cccc-ccccCCCCCCCCcEEEEecCCH---------HHHhcc
Q 002704 237 ETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV---DLTK-VGVPLPSSQTSASKVVFTTRSE---------EVCGLM 303 (890)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~~~~-~~~~l~~~~~~gs~iivTtR~~---------~v~~~~ 303 (890)
. .+.+ .+.-+||+||+.... .|.. +...+......|..||+|++.. ++...+
T Consensus 87 ----------~----~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 87 ----------A----LEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred ----------H----HHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 1 1112 223489999985322 2221 2221111112466799999853 223344
Q ss_pred cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHH
Q 002704 304 EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLAL 356 (890)
Q Consensus 304 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 356 (890)
.....+++++++.++..+++.+++.......++ +....|++.++|-.-.+
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~---e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRRGLALDE---AAIDWLLTHGERELAGL 201 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhCCCCHHHH
Confidence 456789999999999999999877654333333 77888899988776655
No 49
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.64 E-value=6.1e-07 Score=99.63 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=106.6
Q ss_pred CcccchHHHHHH---HHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHH
Q 002704 155 PTMVGLQSQLEE---VWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGE 230 (890)
Q Consensus 155 ~~~~Gr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~ 230 (890)
..++|++..+.. +..++.......+.++|++|+||||+|+.+++.. ...| +.++... .... .+.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~-ir~ii- 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKD-LREVI- 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHH-HHHHH-
Confidence 357888887666 7788877777889999999999999999999876 2333 2222111 1111 11111
Q ss_pred HhcCccccccccCHHHHHHHHHHH-hcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEE--ecCCHHH---Hhc
Q 002704 231 KIGLLNETWKSRRIEQKALDIFRI-LRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVF--TTRSEEV---CGL 302 (890)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv--TtR~~~v---~~~ 302 (890)
...... ..+++.+|++||++.. ...+.+...+. .|..+++ ||.+... ...
T Consensus 82 ------------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 82 ------------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred ------------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHH
Confidence 111111 2457889999999753 22333333332 2344444 4554321 112
Q ss_pred ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHH
Q 002704 303 MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRA 362 (890)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~ 362 (890)
.+....+.+.+++.++.+.++.+.+........+--.+..+.|++.|+|.|..+..+...
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 233468899999999999999987543211000111367788999999999876544433
No 50
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=9.2e-07 Score=100.22 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=114.1
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.|..++..+++ ..+.++|..|+||||+|+.+.+.+. -...+. +..+..-...+.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCC-------CCCCcccHHHHHHhcCCC
Confidence 4578999999999999987664 4568999999999999999988762 111110 001111111111111000
Q ss_pred Ccc---ccccccCHHHHHHHHHHH----hcCCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCHH-HH-hc
Q 002704 234 LLN---ETWKSRRIEQKALDIFRI----LRGKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVFTTRSEE-VC-GL 302 (890)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~~-v~-~~ 302 (890)
... +.......++....+... ..++.-++|||++.... .+..+...+.... ...++|+||.+.. +. ..
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP-~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP-PHVKFILATTDPQKIPVTV 166 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC-CCeEEEEEECChhhccchh
Confidence 000 000011122222222111 12455688899996543 3555544444433 5677777777643 32 22
Q ss_pred ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchh-HHHHHHHHh
Q 002704 303 MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPL-ALITIGRAM 363 (890)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~~~~l 363 (890)
.+....+++.+++.++..+.+.+.+.......+ .+....|++.++|..- |+..+-..+
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 234578999999999999999988765543333 3678889999998664 555444433
No 51
>PRK04195 replication factor C large subunit; Provisional
Probab=98.63 E-value=1.2e-06 Score=99.26 Aligned_cols=181 Identities=19% Similarity=0.282 Sum_probs=112.7
Q ss_pred CcccchHHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVE----EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGE 230 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (890)
..++|.+..++++.+|+.. ...+.+.|+|++|+||||+|+.+++.. .|+ ++-++.++..+...+. .++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~~i~-~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTADVIE-RVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHHHHH-HHHH
Confidence 4578999999999999864 226889999999999999999999986 233 3334455443333322 2222
Q ss_pred HhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCccc------cccccccCCCCCCCCcEEEEecCCHH-HH--h
Q 002704 231 KIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRVD------LTKVGVPLPSSQTSASKVVFTTRSEE-VC--G 301 (890)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------~~~~~~~l~~~~~~gs~iivTtR~~~-v~--~ 301 (890)
...... .....++-+||+||++.... +..+...+.. .+..||+|+.+.. .. .
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK---AKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc---CCCCEEEeccCccccchhh
Confidence 211100 01113678999999965322 2333332222 2344666664321 11 1
Q ss_pred cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHhc
Q 002704 302 LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMA 364 (890)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~ 364 (890)
.-.....+.+.+++.++....+.+.+.......++ +....|++.++|..-.+......+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~---eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDD---EALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 11234678999999999999998887655444443 7789999999998776654443343
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=6.3e-08 Score=107.96 Aligned_cols=87 Identities=33% Similarity=0.479 Sum_probs=54.7
Q ss_pred hccCCCCcEEEeecCCCCcccCccccCcc-CCCEEeccCCCccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccC
Q 002704 558 LQSMPSLKVLNLSRYMGLLELPSGISKLV-SLEHLDLSTSLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRL 636 (890)
Q Consensus 558 ~~~l~~L~~L~L~~~~~i~~lp~~i~~L~-~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L 636 (890)
+..++.++.|++. ++.+..+|...+.+. +|+.|++++|++..+|..++.+++|+.|++++|+ +..+|.. .+.+++|
T Consensus 112 ~~~~~~l~~L~l~-~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~-~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLD-NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL-LSNLSNL 188 (394)
T ss_pred hhcccceeEEecC-CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhh-hhhhhhh
Confidence 3445566666666 666666666666664 6667777666666666666666666777666664 4555543 3356666
Q ss_pred cEeeccCCCcC
Q 002704 637 HVLRMFGNGYF 647 (890)
Q Consensus 637 ~~L~l~~~~~~ 647 (890)
+.|++++|.+.
T Consensus 189 ~~L~ls~N~i~ 199 (394)
T COG4886 189 NNLDLSGNKIS 199 (394)
T ss_pred hheeccCCccc
Confidence 66666666553
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.4e-09 Score=104.98 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=57.9
Q ss_pred CcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCCCceEEEEecChhhh
Q 002704 609 VNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKHLEVLSLTLGSSRAL 688 (890)
Q Consensus 609 ~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 688 (890)
+.||+|||++......--.++++.|.+|+.|.+.++.. ++.....+++-.+|+.|+++.++.-+-
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L---------------dD~I~~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL---------------DDPIVNTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc---------------CcHHHHHHhccccceeeccccccccch
Confidence 46999999987544333345678899999999998877 456777888888999999887654332
Q ss_pred HhhhhhcccccccceeeecccCC
Q 002704 689 QSFLNSHMLRSCTRAMLLQDFKG 711 (890)
Q Consensus 689 ~~~~~~~~~~~~L~~L~l~~~~~ 711 (890)
...-.....++.|..|++++|..
T Consensus 250 n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 250 NALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred hHHHHHHHhhhhHhhcCchHhhc
Confidence 22222222233455555555543
No 54
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4e-06 Score=90.06 Aligned_cols=202 Identities=16% Similarity=0.219 Sum_probs=129.9
Q ss_pred CcccchHHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVE----EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGE 230 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (890)
..+.+||.+++++...|.. ....-+.|+|.+|+|||+.++.+.+.........+ +++|++....+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 3478999999999988843 33444999999999999999999998832222222 799999999999999999999
Q ss_pred HhcCccccccccCHHHHHHHHHHHhc--CCeEEEEEecCCCcccc--ccccccCCCCCCCCcEE--EEecCCHHHH----
Q 002704 231 KIGLLNETWKSRRIEQKALDIFRILR--GKKFVVLLDDIWQRVDL--TKVGVPLPSSQTSASKV--VFTTRSEEVC---- 300 (890)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~--~~~~~~l~~~~~~gs~i--ivTtR~~~v~---- 300 (890)
+++... ..+....+....+.+.+. ++.++||||+++....- +.+...+.......++| |..+-+....
T Consensus 96 ~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 997322 245667777788888774 58899999999643222 12222222111123433 3344444332
Q ss_pred ----hcccCCceeecCCCChhhHHHHHHHHhcC---CccCCCccHHHHHHHHHhHhCCchhHHHHHH
Q 002704 301 ----GLMEAHKKFKVQCLSGNDAWELFRQKVGE---ETLNCHPYILELAQTVTKECGGLPLALITIG 360 (890)
Q Consensus 301 ----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~---~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 360 (890)
..++.. .+...|.+.+|-.+++..++.. .....+.-++-++...++..|-.-.|+..+-
T Consensus 174 ~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 174 PRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 223333 4889999999999999988642 3322233333344444444444444554433
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.58 E-value=5.3e-09 Score=111.53 Aligned_cols=126 Identities=27% Similarity=0.408 Sum_probs=63.3
Q ss_pred cceEEEEccccccccccCCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEecc
Q 002704 515 EKLRRLSLMENQIENLSEVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLS 594 (890)
Q Consensus 515 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~ 594 (890)
..+..++++.|.+..+|.--..--|++|.+++|++ ..+|.. ++.+.+|..||.+ ++.+..+|+.++++.+|+.|+++
T Consensus 121 ~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl-~~lp~~-ig~~~tl~~ld~s-~nei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 121 EALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKL-TSLPEE-IGLLPTLAHLDVS-KNEIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hHHHHhhhccchhhcCChhhhcCcceeEEEecCcc-ccCCcc-cccchhHHHhhhh-hhhhhhchHHhhhHHHHHHHHHh
Confidence 34445555555554444322222355555553333 344444 4455555555555 44555555555555555555555
Q ss_pred CCCccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCc
Q 002704 595 TSLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGY 646 (890)
Q Consensus 595 ~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~ 646 (890)
.|++..+|..+..| .|..||++.|+ +..+|.. |.+|+.|++|-+.+|+.
T Consensus 198 Rn~l~~lp~El~~L-pLi~lDfScNk-is~iPv~-fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 198 RNHLEDLPEELCSL-PLIRLDFSCNK-ISYLPVD-FRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhhCCHHHhCC-ceeeeecccCc-eeecchh-hhhhhhheeeeeccCCC
Confidence 55555555555522 35555555443 4455554 55555555555555544
No 56
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=1.1e-08 Score=100.30 Aligned_cols=131 Identities=27% Similarity=0.385 Sum_probs=104.9
Q ss_pred ccccceEEEEccccccccccCC-CCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCE
Q 002704 512 IEWEKLRRLSLMENQIENLSEV-PTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEH 590 (890)
Q Consensus 512 ~~~~~l~~L~l~~~~~~~l~~~-~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~ 590 (890)
..|..++.+++++|.+..+... .-.|.+|.|++++|.+.. +.. +..+++|+.|||| ++.+.++--.-.+|-|.++
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~n--La~L~~L~~LDLS-~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQN--LAELPQLQLLDLS-GNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceee-ehh--hhhcccceEeecc-cchhHhhhhhHhhhcCEee
Confidence 4578899999999999877653 446899999999888753 332 7889999999999 6766666555567888999
Q ss_pred EeccCCCccccchHHhcCCcCCEeeccCCCCccccCh-hhhcCCccCcEeeccCCCcCc
Q 002704 591 LDLSTSLISEIPEELKALVNLKCLNLENTGLLLKIPL-QLISHFSRLHVLRMFGNGYFS 648 (890)
Q Consensus 591 L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~~~ 648 (890)
|.|++|.|+.+ ..+++|.+|.+||+++|+ ++.+.. ..|++|+.|++|.+.+|++..
T Consensus 357 L~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 357 LKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99999999888 478999999999999996 444432 238999999999999998753
No 57
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.54 E-value=1e-05 Score=93.66 Aligned_cols=202 Identities=12% Similarity=0.049 Sum_probs=117.8
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCC---ceEEEEEeCCC---CCHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNF---DLVILVVVSKD---LRLESIQEVI 228 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~---~~~~~~~~~i 228 (890)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4578999999998888876667789999999999999999998765 222222 12234443321 1222221111
Q ss_pred ---------------HHHhcCcc----------------ccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc--ccccc
Q 002704 229 ---------------GEKIGLLN----------------ETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR--VDLTK 275 (890)
Q Consensus 229 ---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~ 275 (890)
+...+... +. ...-....+..+.+.+.++++.++-|+.|.. ..|..
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDE-i~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDE-IGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEec-cccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 11111100 00 0011123466777888888888887766543 44666
Q ss_pred ccccCCCCCCCCcEEEE--ecCCHHH-Hhc-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCC
Q 002704 276 VGVPLPSSQTSASKVVF--TTRSEEV-CGL-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGG 351 (890)
Q Consensus 276 ~~~~l~~~~~~gs~iiv--TtR~~~v-~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~G 351 (890)
+...+.... +...|++ ||++... ... ......+.+.+++.+|.++++.+.+........ .+..+.|.+.+..
T Consensus 312 ik~~~~~~~-~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~~ 387 (615)
T TIGR02903 312 IKKLFEEGA-PADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTIE 387 (615)
T ss_pred hhhhcccCc-cceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCc
Confidence 665555444 4444444 5665432 111 122346789999999999999998754322222 2555566666554
Q ss_pred chhHHHHHHHH
Q 002704 352 LPLALITIGRA 362 (890)
Q Consensus 352 lPlai~~~~~~ 362 (890)
-+.|+..++.+
T Consensus 388 gRraln~L~~~ 398 (615)
T TIGR02903 388 GRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHH
Confidence 46666666554
No 58
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.54 E-value=1e-06 Score=89.12 Aligned_cols=162 Identities=16% Similarity=0.194 Sum_probs=104.1
Q ss_pred HHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHH
Q 002704 167 VWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQ 246 (890)
Q Consensus 167 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 246 (890)
|...++.+....+.+||++|+||||||+.+.+.- +.+- ..||..|-...-..-.+.|.++...
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~aq~------------ 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQAQN------------ 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHHHH------------
Confidence 4455567889999999999999999999999875 2222 4556666554333334444443211
Q ss_pred HHHHHHHHhcCCeEEEEEecCC--CccccccccccCCCCCCCCcEEEE--ecCCHHH---HhcccCCceeecCCCChhhH
Q 002704 247 KALDIFRILRGKKFVVLLDDIW--QRVDLTKVGVPLPSSQTSASKVVF--TTRSEEV---CGLMEAHKKFKVQCLSGNDA 319 (890)
Q Consensus 247 ~~~~l~~~l~~~~~LlvlDdv~--~~~~~~~~~~~l~~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~ 319 (890)
...+.++|.+|++|+|. +..+.+.+ +|... +|..++| ||.+... ........++.|++|..++.
T Consensus 216 -----~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE-~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 216 -----EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVE-NGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred -----HHhhhcceeEEEeHHhhhhhhhhhhcc---cceec-cCceEEEecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 12356899999999994 33333333 34444 6776666 8887654 34456678999999999999
Q ss_pred HHHHHHHhc---CCcc---CC-Cc--cH-HHHHHHHHhHhCCchh
Q 002704 320 WELFRQKVG---EETL---NC-HP--YI-LELAQTVTKECGGLPL 354 (890)
Q Consensus 320 ~~lf~~~~~---~~~~---~~-~~--~l-~~~~~~i~~~c~GlPl 354 (890)
..++.+... .... .. ++ .+ ..+.+-++..|.|-..
T Consensus 287 ~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 287 VTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 999988542 2111 11 11 12 2356667778888765
No 59
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=8.1e-08 Score=107.06 Aligned_cols=122 Identities=32% Similarity=0.422 Sum_probs=93.3
Q ss_pred EEEcccccc-ccccCCCCCCcceEEEeccCCCccccChhhhccCC-CCcEEEeecCCCCcccCccccCccCCCEEeccCC
Q 002704 519 RLSLMENQI-ENLSEVPTCPHLLTLFLNNDGLLRIINSDFLQSMP-SLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTS 596 (890)
Q Consensus 519 ~L~l~~~~~-~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~~ 596 (890)
.+....+.+ .....+...+.+..|.+.++.+. .+++. ...+. +|+.|+++ .+.+..+|..++++++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~-~~~~~~nL~~L~l~-~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPL-IGLLKSNLKELDLS-DNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc-cCccc-cccchhhccccccc-ccchhhhhhhhhccccccccccCCc
Confidence 355555555 33444556678899998876665 44443 45553 89999999 7888888888899999999999999
Q ss_pred CccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCC
Q 002704 597 LISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNG 645 (890)
Q Consensus 597 ~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~ 645 (890)
++..+|...+.+++|+.|++++|. +..+|.. +..+..|++|.+++|.
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCCc
Confidence 999999877788999999999985 7788865 4566778999988774
No 60
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=1.8e-07 Score=85.44 Aligned_cols=120 Identities=18% Similarity=0.147 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHh
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRIL 255 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 255 (890)
.+++.|.|+.|+||||++++++++. . ....+++++..+....... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 4689999999999999999999887 2 3445667765544221100 000 223333334
Q ss_pred cCCeEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHHhc------ccCCceeecCCCChhhH
Q 002704 256 RGKKFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVCGL------MEAHKKFKVQCLSGNDA 319 (890)
Q Consensus 256 ~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 319 (890)
..++.+|+||++....+|......+.+.. ...+|++|+.+...... .+....+++.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 44788999999988788887766665544 57899999998766532 12335678999998763
No 61
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.51 E-value=1.4e-06 Score=94.95 Aligned_cols=193 Identities=10% Similarity=0.088 Sum_probs=109.8
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCc-eEEEEEeCCCCCHHHHHHHHHH---
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFD-LVILVVVSKDLRLESIQEVIGE--- 230 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~--- 230 (890)
..++|++..++.+..++..+..+.+.++|++|+||||+|+.+++... ...+. ..+.+++++... .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 45789999999999999887777889999999999999999998762 12222 234444432110 00000000
Q ss_pred ---HhcCccccccccCHHHHHHHHH-H---Hh--cCCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCHH-
Q 002704 231 ---KIGLLNETWKSRRIEQKALDIF-R---IL--RGKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVFTTRSEE- 298 (890)
Q Consensus 231 ---~l~~~~~~~~~~~~~~~~~~l~-~---~l--~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~~- 298 (890)
.++... . ......+....+. . .. .+.+-+||+||+.... ....+...+.... ..+++|+||.+..
T Consensus 91 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~-~~~~~Il~~~~~~~ 167 (337)
T PRK12402 91 FAHFLGTDK-R-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS-RTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhhhh-h-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc-CCCeEEEEeCChhh
Confidence 000000 0 0011111222211 1 11 2344589999995432 1222332222222 4567777775432
Q ss_pred HHhc-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 299 VCGL-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 299 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
+... -.....+.+.+++.++...++.+.+.......++ +....+++.++|.+-.+.
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~---~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDD---DGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 2221 1234578899999999999998876554433333 778889999988876554
No 62
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=2.9e-07 Score=107.38 Aligned_cols=108 Identities=30% Similarity=0.380 Sum_probs=91.0
Q ss_pred cceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEeccCCCcc-ccchHHhcCCcCCEeec
Q 002704 538 HLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTSLIS-EIPEELKALVNLKCLNL 616 (890)
Q Consensus 538 ~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~l 616 (890)
.++.|+|++|.+...+|.. ++.+++|++|+|++|.....+|..++.+++|++|+|++|++. .+|..++++++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4788999988888788877 889999999999955555689999999999999999999998 78999999999999999
Q ss_pred cCCCCccccChhhhcCCccCcEeeccCCCc
Q 002704 617 ENTGLLLKIPLQLISHFSRLHVLRMFGNGY 646 (890)
Q Consensus 617 ~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~ 646 (890)
++|...+.+|..+-..+.++..+++.+|..
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcc
Confidence 999888889987333345677888887764
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.50 E-value=4.6e-08 Score=98.73 Aligned_cols=67 Identities=16% Similarity=0.270 Sum_probs=32.8
Q ss_pred cccccCccEEEeecCCCcceEEe-cccCccccccCCcccEEEEecCCCCCCC------CcccccCCCCeEEEecCcc
Q 002704 720 LANLKQLKRLRISDCYELVELKI-DYAGEVQHFGFHSLQSFEVNFCSKLKDL------TLLVLIPNLKYIAVTDCKA 789 (890)
Q Consensus 720 l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~l~~L~~L~L~~c~~l~~l------~~l~~l~~L~~L~L~~c~~ 789 (890)
++.+++|+.|++++| .++.-.. .+...+. ...|+|+.|.+.+|. ++.- ..+...|.|+.|+|++|..
T Consensus 237 L~s~~~L~El~l~dc-ll~~~Ga~a~~~al~-~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDC-LLENEGAIAFVDALK-ESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeeccccc-ccccccHHHHHHHHh-ccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 444566777777776 3332110 0000011 235667777777663 3321 1233466677777776653
No 64
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=3.7e-08 Score=96.74 Aligned_cols=58 Identities=29% Similarity=0.422 Sum_probs=31.2
Q ss_pred cCCCEEeccCCCccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCc
Q 002704 586 VSLEHLDLSTSLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGY 646 (890)
Q Consensus 586 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~ 646 (890)
+.|..|||++|.|+.+-.++.-+++++.|++++|. +..+.. +..|.+|++|++++|..
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGNLL 341 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh--hhhcccceEeecccchh
Confidence 44556666666665555555555566666666554 222221 44555555566555544
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=3.4e-06 Score=91.85 Aligned_cols=190 Identities=15% Similarity=0.174 Sum_probs=108.5
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++... ...... ............+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 4678999999999999887665 4578999999999999999998762 111000 000000011111111100
Q ss_pred Cccc---cccccCHHHHHHHHHHHh-----cCCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCH-HHHhc
Q 002704 234 LLNE---TWKSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVFTTRSE-EVCGL 302 (890)
Q Consensus 234 ~~~~---~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~ 302 (890)
.... .......++. ..+.+.+ .+++-++|+|++.... .+..+...+.... ...++|++|.+. .+...
T Consensus 88 ~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~-~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP-QHIKFILATTDVEKIPKT 165 (363)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC-CCeEEEEEcCChHhhhHH
Confidence 0000 0000111221 1222221 2455699999996543 3444544444433 556677666543 33222
Q ss_pred -ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 303 -MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 303 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
.+....+++.+++.++..+.+.+.+.......+ ++.+..|++.++|.|-.+.
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 233468899999999999998887654432222 2677889999999886543
No 66
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.5e-06 Score=100.53 Aligned_cols=180 Identities=17% Similarity=0.206 Sum_probs=110.9
Q ss_pred CcccchHHHHHHHHHHhccCCceE-EEEEcCCCChHHHHHHHHHhhccCCCCC-------------------CceEEEEE
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGI-VGLYGMGGVGKTTLLTHINNKFLGSPTN-------------------FDLVILVV 214 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 214 (890)
..++|.+..++.|..++..+++.. +.++|+.|+||||+|+.+++.+.. ... |.-++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 467899999999999998877665 589999999999999999988721 111 11112221
Q ss_pred eCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHH-HhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEE
Q 002704 215 VSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFR-ILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVV 291 (890)
Q Consensus 215 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~ii 291 (890)
......+.. +.++...+.. -..+++-++|||++... ..+..+...+.... ...++|
T Consensus 95 Aas~~kVDd--------------------IReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP-~~vrFI 153 (944)
T PRK14949 95 AASRTKVDD--------------------TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP-EHVKFL 153 (944)
T ss_pred cccccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC-CCeEEE
Confidence 111111111 1112221111 12467779999999543 34445444443333 445555
Q ss_pred Eec-CCHHHHh-cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHH
Q 002704 292 FTT-RSEEVCG-LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITI 359 (890)
Q Consensus 292 vTt-R~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 359 (890)
++| ....+.. .......|++.+|+.++..+.+.+.+........ .+....|++.++|.|--+..+
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE---AEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 544 4444432 2234578999999999999999887654332222 367888999999988755444
No 67
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=3.1e-06 Score=90.52 Aligned_cols=176 Identities=15% Similarity=0.220 Sum_probs=113.6
Q ss_pred cccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccC---CCCCCceEEEEEe-CCCCCHHHHHHHHHH
Q 002704 156 TMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLG---SPTNFDLVILVVV-SKDLRLESIQEVIGE 230 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~-s~~~~~~~~~~~i~~ 230 (890)
.++|-+..++.+..++..+.. ..+.++|+.|+||||+|+.+++.+.. ...|+|...|... +....++++ +++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHHH
Confidence 467999999999999987665 46689999999999999999886521 2346666555442 222333332 22333
Q ss_pred HhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecC--CCccccccccccCCCCCCCCcEEEEecCCHHHH-h-cccCC
Q 002704 231 KIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDI--WQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVC-G-LMEAH 306 (890)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv--~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~-~-~~~~~ 306 (890)
.+.... ..+++-++|+||+ .+...+..+...+.... .++.+|++|.+.+.. . ..+..
T Consensus 84 ~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp-~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 84 EVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP-KGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCC-CCeEEEEEeCChHhCcHHHHhhc
Confidence 222110 1234445666665 34455666766666555 788888888765421 1 12345
Q ss_pred ceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHH
Q 002704 307 KKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALIT 358 (890)
Q Consensus 307 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 358 (890)
..+.+.++++++....+.+..... + ++.++.++..++|.|.-+..
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~----~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDI----K---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCC----C---HHHHHHHHHHcCCCHHHHHH
Confidence 688999999999988887665311 1 24577889999999875543
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=98.49 E-value=1.5e-06 Score=93.10 Aligned_cols=181 Identities=14% Similarity=0.167 Sum_probs=109.0
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCc-eEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFD-LVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.+..++..+..+.+.++|++|+||||+|+.+++... ...|. .++-+..++......+ +.+++.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~v-r~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVV-RNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHH-HHHHHHHH
Confidence 45689999899998888877777788999999999999999998862 12222 2222333333332222 22221111
Q ss_pred CccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCH-HHHh-cccCCcee
Q 002704 234 LLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVFTTRSE-EVCG-LMEAHKKF 309 (890)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~-~~~~~~~~ 309 (890)
... . ..-.++.-++||||++... ....+...+.... ..+++|+++... .+.. ..+....+
T Consensus 90 ~~~---~------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 90 QKK---V------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS-NTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred hcc---c------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc-CCceEEEEeCCccccchhHHHhhhcc
Confidence 000 0 0002456799999996532 2222322222222 456677766542 2211 11234678
Q ss_pred ecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 310 KVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 310 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
++.+++.++..+.+...+.......++ +....|++.++|..-.+.
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i~~---~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPYVP---EGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 999999999999998887655433333 678889999998875443
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.48 E-value=8.2e-07 Score=83.70 Aligned_cols=123 Identities=24% Similarity=0.212 Sum_probs=74.1
Q ss_pred cchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccc
Q 002704 158 VGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNE 237 (890)
Q Consensus 158 ~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 237 (890)
+|++..++.+...+.....+.+.|+|++|+||||+++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47889999999998876778999999999999999999999872 222346666655443322211111100
Q ss_pred cccccCHHHHHHHHHHHhcCCeEEEEEecCCCc-----cccccccccCCCC--CCCCcEEEEecCCH
Q 002704 238 TWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR-----VDLTKVGVPLPSS--QTSASKVVFTTRSE 297 (890)
Q Consensus 238 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----~~~~~~~~~l~~~--~~~gs~iivTtR~~ 297 (890)
............++.++|+||++.. ..+..+....... ...+..||+||...
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011111223456789999999743 1122222222111 01567888888865
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=3.3e-06 Score=94.85 Aligned_cols=195 Identities=17% Similarity=0.130 Sum_probs=113.0
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.|..++..+... .+.++|++|+||||+|+.+++.+. ..+.+...+|.|.+.. .+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc~--------~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESCL--------AVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhhH--------HHhcCCC
Confidence 45789999999999998877654 559999999999999999998872 1122222333322110 0000000
Q ss_pred Ccc---ccccccCHHHHHHHHHHH-----hcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecC-CHHHHhc
Q 002704 234 LLN---ETWKSRRIEQKALDIFRI-----LRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTR-SEEVCGL 302 (890)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR-~~~v~~~ 302 (890)
... ........+.. ..+.+. ..+++-++|+|+++.. ..+..+...+.... ....+|++|. ...+...
T Consensus 85 ~dv~el~~~~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 85 PDVLEIDAASNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-EHVIFILATTEPEKMPPT 162 (504)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-CCEEEEEEcCChhhCChH
Confidence 000 00001111111 112221 2345668999999643 23445544444433 4445555554 3333222
Q ss_pred -ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHH-HHHHHHh
Q 002704 303 -MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLAL-ITIGRAM 363 (890)
Q Consensus 303 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai-~~~~~~l 363 (890)
......+++.+++.++..+.+.+.+.......+ ++....|++.++|.+--+ ..+-.++
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 234568999999999999999988765443333 267889999999998654 3333433
No 71
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.47 E-value=3.4e-06 Score=91.12 Aligned_cols=180 Identities=13% Similarity=0.136 Sum_probs=107.3
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCce-EEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDL-VILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|++..++.+..++..+..+.+.++|.+|+||||+|+.+++... ...+.. .+-+..+.......+...+.+...
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~ 94 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRENFLELNASDERGIDVIRNKIKEFAR 94 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccccceEEeccccccchHHHHHHHHHHHh
Confidence 34789999999999999887777789999999999999999998862 122211 111222222222211111111110
Q ss_pred CccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCH-HHHh-cccCCcee
Q 002704 234 LLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVFTTRSE-EVCG-LMEAHKKF 309 (890)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~-~~~~~~~~ 309 (890)
.. ......+-+|++|++.... ....+...+.... ..+++|+++... .+.. .......+
T Consensus 95 ~~-----------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 95 TA-----------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-QNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred cC-----------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-CCCeEEEEeCCccccchhHHHHhhee
Confidence 00 0001335689999985432 2233333333333 446677766432 2211 11233468
Q ss_pred ecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 310 KVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 310 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
++.+++.++....+...+.......++ +....+++.++|.+.-+.
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~i~~---~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIEITD---DALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 999999999999998887654433333 678889999999887643
No 72
>PTZ00202 tuzin; Provisional
Probab=98.46 E-value=6.7e-06 Score=86.88 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=98.5
Q ss_pred cCCCCcccchHHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHH
Q 002704 151 RPTEPTMVGLQSQLEEVWRCLVE---EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEV 227 (890)
Q Consensus 151 ~~~~~~~~Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 227 (890)
++..+.|+||+.+..++...|.+ +..+++.|.|++|+|||||++.+.... . + ..++.-.. +..++++.
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~--~--~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G--M--PAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C--c--eEEEECCC--CHHHHHHH
Confidence 34456899999999999999864 334689999999999999999999765 1 1 23333333 67999999
Q ss_pred HHHHhcCccccccccCHHHHHHHHHHHh-c-CCeEEEEEecCCCcccccccc---ccCCCCCCCCcEEEEecCCHHHHh-
Q 002704 228 IGEKIGLLNETWKSRRIEQKALDIFRIL-R-GKKFVVLLDDIWQRVDLTKVG---VPLPSSQTSASKVVFTTRSEEVCG- 301 (890)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlvlDdv~~~~~~~~~~---~~l~~~~~~gs~iivTtR~~~v~~- 301 (890)
|+.+|+.+.......-...+.+.+.+.- . +++.+||+- +.+..++..+. ..+.... .-|.|++----+.+.-
T Consensus 329 LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~dr-r~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDR-RLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccc-hhheeeeeehHhhcchh
Confidence 9999997432111111223333333322 2 667777763 11112222211 1111222 4455665333332211
Q ss_pred --cccCCceeecCCCChhhHHHHHHHHh
Q 002704 302 --LMEAHKKFKVQCLSGNDAWELFRQKV 327 (890)
Q Consensus 302 --~~~~~~~~~l~~L~~~~~~~lf~~~~ 327 (890)
....-..|.+.+++.++|.+...+..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 11233578899999999998877654
No 73
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.46 E-value=1.1e-06 Score=89.39 Aligned_cols=175 Identities=14% Similarity=0.092 Sum_probs=103.8
Q ss_pred CcccchH-HHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQ-SQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.. ..+..+.++........+.|+|+.|+|||+|++.+++... .....+.++.+.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh-------------
Confidence 3445632 3344444444445557899999999999999999998762 2223456665532100
Q ss_pred CccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc---cccccc-cccCCCCCCCC-cEEEEecCCH---------HH
Q 002704 234 LLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR---VDLTKV-GVPLPSSQTSA-SKVVFTTRSE---------EV 299 (890)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~~~~~~-~~~l~~~~~~g-s~iivTtR~~---------~v 299 (890)
...+..+. +.+ --+|++||+... ..|+.. ...+......| .++|+||+.. .+
T Consensus 87 ---------~~~~~~~~----~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 ---------FVPEVLEG----MEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ---------hhHHHHHH----hhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 00111111 111 137899999532 233321 11111111023 4788988754 33
Q ss_pred HhcccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHH
Q 002704 300 CGLMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRA 362 (890)
Q Consensus 300 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~ 362 (890)
..++....+++++++++++-.+++.+++.......+ +++..-|++++.|..-++..+-..
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHHHH
Confidence 455567789999999999999999887755433333 378888999988877665544433
No 74
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.46 E-value=1.6e-06 Score=84.01 Aligned_cols=176 Identities=15% Similarity=0.191 Sum_probs=92.3
Q ss_pred CcccchHHHHHHHHHHhc-----cCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLV-----EEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIG 229 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (890)
..|+|.+.-++.+.-++. .+....+.+||++|+||||||+.+++.. ...|. +.+...-....++ ..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHH
Confidence 567899988887655443 2457789999999999999999999987 44443 2222111111111 1111
Q ss_pred HHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc--cccccc-------cc--cCCCCC---------CCCcE
Q 002704 230 EKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR--VDLTKV-------GV--PLPSSQ---------TSASK 289 (890)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~-------~~--~l~~~~---------~~gs~ 289 (890)
. .+ +++-+|++|++..- ...+.+ .. ....+. .+-+-
T Consensus 97 ~-----------------------~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 97 T-----------------------NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp H-----------------------T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred H-----------------------hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 1 12 23446777877421 111111 00 001110 01223
Q ss_pred EEEecCCHHHHhcccC--CceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHhc
Q 002704 290 VVFTTRSEEVCGLMEA--HKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMA 364 (890)
Q Consensus 290 iivTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~ 364 (890)
|=-|||...+..-+.. .-..+++..+.+|-.++..+.+..-....+ ++.+.+|+++|.|-|--..-+-+..+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~---~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID---EDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4458887554333322 234589999999999999988765443333 37899999999999986665555443
No 75
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.45 E-value=4.1e-07 Score=92.11 Aligned_cols=92 Identities=22% Similarity=0.214 Sum_probs=62.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCC--CCHHHHHHHHH-----HHhcCccccccccCHHH
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKD--LRLESIQEVIG-----EKIGLLNETWKSRRIEQ 246 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~-----~~l~~~~~~~~~~~~~~ 246 (890)
..-..++|+|++|+|||||++.+++... ..+|+.++|+.+.+. +++.++++.+. .+++.+... .......
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~ 90 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAIT--KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEM 90 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc--cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHH
Confidence 3456899999999999999999999873 348999999998877 78999999993 333321100 0000111
Q ss_pred HHHHHHH-HhcCCeEEEEEecCC
Q 002704 247 KALDIFR-ILRGKKFVVLLDDIW 268 (890)
Q Consensus 247 ~~~~l~~-~l~~~~~LlvlDdv~ 268 (890)
....... .-.++++++++|++.
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHH
Confidence 1111221 135899999999984
No 76
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=2.7e-06 Score=95.29 Aligned_cols=197 Identities=14% Similarity=0.153 Sum_probs=111.4
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCCC-CceEEEEEeCCCCCHHHHHHHHHHHh
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPTN-FDLVILVVVSKDLRLESIQEVIGEKI 232 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l 232 (890)
..+||.+..++.|..++..++.. .+.++|..|+||||+|+.+.+.+...... -... .+..+......+.|...-
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~----~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI----TAQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC----CCCCCcccHHHHHHHcCC
Confidence 45789999999999999887764 56899999999999999998876210000 0000 000011111111111100
Q ss_pred cCcc---ccccccCHHHHHHHHHHH----hcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHHh-
Q 002704 233 GLLN---ETWKSRRIEQKALDIFRI----LRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVF-TTRSEEVCG- 301 (890)
Q Consensus 233 ~~~~---~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~- 301 (890)
.... +......+++..+.+... ..++.-++|||++... ..+..+...+..-. .+.++|+ ||....+..
T Consensus 92 hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP-~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 92 FVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP-EHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC-CCceEEEEeCChHhhhhH
Confidence 0000 000111222222222211 2356669999999643 33445544444433 4455555 554454432
Q ss_pred cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHH
Q 002704 302 LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITI 359 (890)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 359 (890)
..+....+.+..++.++..+.+.+.+.......+ .+..+.|++.++|.|.-...+
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2234578999999999999999887654433222 256688999999999755443
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3.5e-06 Score=94.68 Aligned_cols=193 Identities=13% Similarity=0.135 Sum_probs=112.0
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+++.+. ... ++.. ..+..-...+.|...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~------~~~~-~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CET------GVTS-TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCc------CCCC-CCCccCHHHHHHhcCCC
Confidence 4578999999999999987664 5779999999999999999988762 111 0000 00011111111111000
Q ss_pred Ccc---ccccccCHHHHHHHHHH----HhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCH-HHH-hc
Q 002704 234 LLN---ETWKSRRIEQKALDIFR----ILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRSE-EVC-GL 302 (890)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~-~~ 302 (890)
... +.......++....+.. -..++.-++|+|+|... .....+...+.... .+.++|++|.+. .+. ..
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP-~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP-EHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC-CCcEEEEEECChHhhhHHH
Confidence 000 00001112222111111 12356668999999643 23444444444433 556777766653 332 22
Q ss_pred ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHH
Q 002704 303 MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITI 359 (890)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 359 (890)
.+....+++.+++.++..+.+.+.+.......++ +....|++.++|.+..+..+
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~---eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQ---DAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHH
Confidence 2455789999999999999998887655433332 67788999999988655433
No 78
>PRK09087 hypothetical protein; Validated
Probab=98.43 E-value=3e-06 Score=85.17 Aligned_cols=144 Identities=18% Similarity=0.124 Sum_probs=90.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
..+.+.|+|++|+|||+|++.+++.. . ..+++. ..+...+...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~------~~~~~~~~~~----------------------- 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHP------NEIGSDAANA----------------------- 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecH------HHcchHHHHh-----------------------
Confidence 34679999999999999999888764 1 113322 1111111111
Q ss_pred hcCCeEEEEEecCCCcc-ccccccccCCCCCCCCcEEEEecCC---------HHHHhcccCCceeecCCCChhhHHHHHH
Q 002704 255 LRGKKFVVLLDDIWQRV-DLTKVGVPLPSSQTSASKVVFTTRS---------EEVCGLMEAHKKFKVQCLSGNDAWELFR 324 (890)
Q Consensus 255 l~~~~~LlvlDdv~~~~-~~~~~~~~l~~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 324 (890)
+.+ -+|++||+.... +-+.+...+......|..||+|++. +++...+.....+++++++.++-.+++.
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 278889995321 1112222221111146778988874 3344555677899999999999999999
Q ss_pred HHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHH
Q 002704 325 QKVGEETLNCHPYILELAQTVTKECGGLPLALITIG 360 (890)
Q Consensus 325 ~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 360 (890)
+++.......+ +++..-|++++.|..-++..+-
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHH
Confidence 98866543333 3788889998888877765433
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=4.7e-06 Score=93.72 Aligned_cols=185 Identities=18% Similarity=0.187 Sum_probs=111.1
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCC------------------CCCceEEEEEe
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSP------------------TNFDLVILVVV 215 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~ 215 (890)
..++|.+..++.+..++..++. ..+.++|+.|+||||+|+.+++.+.... ..|.-.+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4578999999999999987665 4578999999999999999988652100 01112222222
Q ss_pred CCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHH-HhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEE-
Q 002704 216 SKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFR-ILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVV- 291 (890)
Q Consensus 216 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~ii- 291 (890)
.....+++ ..+....+.. -..+++-++|+||+... ..+..+...+.... ...++|
T Consensus 96 as~~gvd~--------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-~~v~fIL 154 (546)
T PRK14957 96 ASRTGVEE--------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-EYVKFIL 154 (546)
T ss_pred ccccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC-CCceEEE
Confidence 11111111 1122222211 12356679999999543 33444554444433 455555
Q ss_pred EecCCHHHH-hcccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchh-HHHHHHHHh
Q 002704 292 FTTRSEEVC-GLMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPL-ALITIGRAM 363 (890)
Q Consensus 292 vTtR~~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~~~~l 363 (890)
+||....+. ........+++.+++.++..+.+.+.+.......+ ++....|++.++|.+- |+..+-.++
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e---~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD---EQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455444443 22344578999999999999888876654332222 2667889999999765 445544433
No 80
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=3.9e-06 Score=91.68 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=110.4
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..+..|..++..+... .+.++|+.|+||||+|+.+++.+.. ..... ...+....+ ...|.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc--e~~~~--~~pCg~C~s----C~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC--ENPIG--NEPCNECTS----CLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc--ccccC--ccccCCCcH----HHHHHccCC
Confidence 45789999999999999887764 5899999999999999999987621 11100 000111111 111211111
Q ss_pred Cccccc---cccCH---HHHHHHHHH-HhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHH-hc
Q 002704 234 LLNETW---KSRRI---EQKALDIFR-ILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVF-TTRSEEVC-GL 302 (890)
Q Consensus 234 ~~~~~~---~~~~~---~~~~~~l~~-~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~-~~ 302 (890)
...... ..... .++.+.+.. ...++.-++|+|++... ..+..+...+.... ....+|+ ||....+. ..
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp-~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP-AHIVFILATTEFHKIPETI 168 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC-CceEEEeecCChhhccHHH
Confidence 000000 01112 222222221 12456679999999643 34555554443333 3445554 44444442 22
Q ss_pred ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHH
Q 002704 303 MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLAL 356 (890)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 356 (890)
......|.+.+++.++..+.+.+.+.......+ .+....|++.++|.+.-+
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHH
Confidence 334567999999999999999887655433222 367889999999998644
No 81
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.39 E-value=1.5e-05 Score=78.74 Aligned_cols=176 Identities=17% Similarity=0.207 Sum_probs=101.2
Q ss_pred CcccchHHHHHHHHHHhc-----cCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLV-----EEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIG 229 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (890)
..|+|.++-++++.=++. ++..-.|.++|++|.||||||.-+++.. ...+. ++......-..-+-.|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeE----ecccccccChhhHHHHH
Confidence 457899998888876663 3567799999999999999999999987 22221 11111111011111112
Q ss_pred HHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc---------cccccccccCCCCCCCCcE-----------
Q 002704 230 EKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR---------VDLTKVGVPLPSSQTSASK----------- 289 (890)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------~~~~~~~~~l~~~~~~gs~----------- 289 (890)
..+. ..=++++|++... ...+++....--+.|.++|
T Consensus 99 t~Le------------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 99 TNLE------------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred hcCC------------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 1111 1223445554311 0011111000011112333
Q ss_pred EEEecCCHHHHhccc--CCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHhc
Q 002704 290 VVFTTRSEEVCGLME--AHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMA 364 (890)
Q Consensus 290 iivTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~ 364 (890)
|=-|||.-.+..-+. -.-+.+++..+.+|-.++..+.+..-....++ +-+.+|+++..|-|--...+-+..+
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~---~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDE---EAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCCh---HHHHHHHHhccCCcHHHHHHHHHHH
Confidence 335888654433222 23467899999999999999988655444443 7899999999999976655554443
No 82
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.38 E-value=3.5e-06 Score=98.35 Aligned_cols=168 Identities=21% Similarity=0.306 Sum_probs=99.4
Q ss_pred CcccchHHHHH---HHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 002704 155 PTMVGLQSQLE---EVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEK 231 (890)
Q Consensus 155 ~~~~Gr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 231 (890)
..++|.+..+. .+...+..+....+.++|++|+||||+|+.+++.. ...|.. ++.+. ..+.+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~---lna~~-~~i~d-------- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFSS---LNAVL-AGVKD-------- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCccee---ehhhh-hhhHH--------
Confidence 35679888774 56667777777888999999999999999999876 344421 11110 00111
Q ss_pred hcCccccccccCHHHHHHHHHHHh--cCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEE--ecCCHH--HH-hc
Q 002704 232 IGLLNETWKSRRIEQKALDIFRIL--RGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVF--TTRSEE--VC-GL 302 (890)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv--TtR~~~--v~-~~ 302 (890)
..+......+.+ .+++.+|||||++.. ..++.+...+. .|+.+++ ||.+.. +. ..
T Consensus 93 ------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 93 ------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE----NGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred ------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc----CceEEEEEecCCChHhhhhhHh
Confidence 111111111111 246789999999643 33333433222 3455555 444432 21 11
Q ss_pred ccCCceeecCCCChhhHHHHHHHHhcC-------CccCCCccHHHHHHHHHhHhCCchhHH
Q 002704 303 MEAHKKFKVQCLSGNDAWELFRQKVGE-------ETLNCHPYILELAQTVTKECGGLPLAL 356 (890)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~~~~-------~~~~~~~~l~~~~~~i~~~c~GlPlai 356 (890)
......+.+++++.++...++.+.+.. .....+ ++....|++.+.|..-.+
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDARSL 214 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHHHH
Confidence 223467899999999999999887641 111222 366788888888875543
No 83
>PRK05642 DNA replication initiation factor; Validated
Probab=98.37 E-value=3.5e-06 Score=85.55 Aligned_cols=155 Identities=15% Similarity=0.195 Sum_probs=94.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHh
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRIL 255 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 255 (890)
...+.|+|..|+|||.|++.+++... ..-..++|++.. ++... . ..+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~------~~~~~----------------~----~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLA------ELLDR----------------G----PELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHH------HHHhh----------------h----HHHHHhh
Confidence 36789999999999999999988762 222356676542 22111 0 1122223
Q ss_pred cCCeEEEEEecCCCc---ccccc-ccccCCCCCCCCcEEEEecCCHH---------HHhcccCCceeecCCCChhhHHHH
Q 002704 256 RGKKFVVLLDDIWQR---VDLTK-VGVPLPSSQTSASKVVFTTRSEE---------VCGLMEAHKKFKVQCLSGNDAWEL 322 (890)
Q Consensus 256 ~~~~~LlvlDdv~~~---~~~~~-~~~~l~~~~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 322 (890)
.+-. +||+||+... ..|.. +...+......|..||+|++... +..++.....+.+++++.++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 6788999522 23332 32222221224677888887532 123344557889999999999999
Q ss_pred HHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHh
Q 002704 323 FRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAM 363 (890)
Q Consensus 323 f~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l 363 (890)
+..++.......+ +++..-|++++.|..-.+..+-..|
T Consensus 175 l~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 175 LQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9976654432223 3788888888888876655444433
No 84
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=7e-06 Score=91.45 Aligned_cols=186 Identities=18% Similarity=0.203 Sum_probs=108.0
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCC-C-----------------CceEEEEEe
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPT-N-----------------FDLVILVVV 215 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~-----------------f~~~~wv~~ 215 (890)
..++|.+...+.+...+..+.. ..+.++|++|+||||+|+.+++....... . +..+..+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 4578999888888888877766 45899999999999999999887621100 0 001122222
Q ss_pred CCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEe
Q 002704 216 SKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFT 293 (890)
Q Consensus 216 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivT 293 (890)
+....+.++ +.|.+.... .-..+++-++|+|++... .....+...+.... ....+|++
T Consensus 94 a~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~-~~vv~Ila 153 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP-SHVVFVLA 153 (472)
T ss_pred cccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC-CcEEEEEE
Confidence 111111111 111111100 012346679999998532 23334444443333 33444444
Q ss_pred cCC-HHHHhc-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCc-hhHHHHHHHHh
Q 002704 294 TRS-EEVCGL-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGL-PLALITIGRAM 363 (890)
Q Consensus 294 tR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-Plai~~~~~~l 363 (890)
|.+ ..+... ......+.+.+++.++....+.+.+.......++ +....|++.++|. +.|+..+-.+.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~---eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDR---EALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 443 333222 2345688999999999999998887544333332 6778888888655 66666665543
No 85
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=1.2e-05 Score=89.81 Aligned_cols=193 Identities=14% Similarity=0.147 Sum_probs=110.7
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCce-EEEEEeCCCCCHHHHHHHHHHHh
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDL-VILVVVSKDLRLESIQEVIGEKI 232 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l 232 (890)
..++|.+..++.+...+..+.. ..+.++|+.|+||||+|+.+++.+. ....... ..+..+ ....-...|....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C----~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTC----EQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCC----CCChHHHHHhcCC
Confidence 4568999999999888777654 5789999999999999999998762 1111000 000000 0001111111100
Q ss_pred cCcc---ccccccCHHHHHHHHHHH----hcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHHhc
Q 002704 233 GLLN---ETWKSRRIEQKALDIFRI----LRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVF-TTRSEEVCGL 302 (890)
Q Consensus 233 ~~~~---~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~~ 302 (890)
.... +.......++....+... +.+++-++|+|+++.. ..+..+...+.... ...++|+ ||+...+...
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp-~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP-PHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC-CCEEEEEEeCChHHhhHH
Confidence 0000 000111222222222111 2356778999999753 33555554444433 4556554 5555555432
Q ss_pred c-cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHH
Q 002704 303 M-EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLAL 356 (890)
Q Consensus 303 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 356 (890)
. .....+.+.+++.++..+.+.+.+.......++ +....|++.++|.+.-+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~---eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDI---EALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHH
Confidence 2 344678999999999999999888655433232 56778999999987644
No 86
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.33 E-value=7.5e-07 Score=82.00 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=77.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCC--CCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGS--PTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIF 252 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 252 (890)
+.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+++++..... ..+..++...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 34689999999999999999998876200 00144677999998889999999999999876532 356677778888
Q ss_pred HHhcCC-eEEEEEecCCCc---cccccccccCCCCCCCCcEEEEecCC
Q 002704 253 RILRGK-KFVVLLDDIWQR---VDLTKVGVPLPSSQTSASKVVFTTRS 296 (890)
Q Consensus 253 ~~l~~~-~~LlvlDdv~~~---~~~~~~~~~l~~~~~~gs~iivTtR~ 296 (890)
+.+... ..+||+||+... ..++.+.... + . .+.+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~-~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-E-SNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-S-CBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-C-CCCeEEEEECh
Confidence 877654 459999998543 1122222222 2 3 66777776654
No 87
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.32 E-value=1.2e-06 Score=86.25 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=32.4
Q ss_pred ccchHHHHHHHHHHhc---cCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 157 MVGLQSQLEEVWRCLV---EEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 157 ~~Gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
|+||+++++++...+. ....+.+.|+|.+|+|||+|+++++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999993 3556899999999999999999999887
No 88
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.31 E-value=1.7e-05 Score=86.99 Aligned_cols=182 Identities=12% Similarity=0.184 Sum_probs=109.1
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCC-C------------------CCCceEEEEE
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGS-P------------------TNFDLVILVV 214 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~f~~~~wv~ 214 (890)
..++|.+..++.+.+++..+.. ..+.++|++|+||||+|+.+++..... . .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 4568999999999999987655 467899999999999999998776211 0 12222 2222
Q ss_pred eCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEE
Q 002704 215 VSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVF 292 (890)
Q Consensus 215 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv 292 (890)
......... .+.+.+.+... -..+++-++|+|++... .....+...+.... ....+|+
T Consensus 93 ~~~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~-~~~~lIl 152 (355)
T TIGR02397 93 AASNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-EHVVFIL 152 (355)
T ss_pred ccccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCc-cceeEEE
Confidence 221111111 11222211100 01244558899998543 23344444443333 4566666
Q ss_pred ecCCHH-HHh-cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHH
Q 002704 293 TTRSEE-VCG-LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIG 360 (890)
Q Consensus 293 TtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 360 (890)
+|.+.. +.. .......+++.+++.++..+++...+.......+ ++.+..+++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 665543 222 2223467889999999999999887754433223 2678889999999987664443
No 89
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.31 E-value=4.1e-06 Score=83.92 Aligned_cols=164 Identities=17% Similarity=0.156 Sum_probs=96.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHh
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRIL 255 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 255 (890)
...+.|+|..|+|||.|.+++++...+ ...-..++++ +..+....+...+.. ...++ +...+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~------~~~~f~~~~~~~~~~-------~~~~~----~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYL------SAEEFIREFADALRD-------GEIEE----FKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEE------EHHHHHHHHHHHHHT-------TSHHH----HHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceee------cHHHHHHHHHHHHHc-------ccchh----hhhhh
Confidence 356899999999999999999988721 1122245565 445666666665532 12222 33334
Q ss_pred cCCeEEEEEecCCCcc---ccc-cccccCCCCCCCCcEEEEecCCH---------HHHhcccCCceeecCCCChhhHHHH
Q 002704 256 RGKKFVVLLDDIWQRV---DLT-KVGVPLPSSQTSASKVVFTTRSE---------EVCGLMEAHKKFKVQCLSGNDAWEL 322 (890)
Q Consensus 256 ~~~~~LlvlDdv~~~~---~~~-~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 322 (890)
+ .-=+|++||+.... .|. .+...+......|.+||+|++.. .+.+++...-.+++++++.++..++
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 3 33478899995432 222 22211111112567899999653 2345556777899999999999999
Q ss_pred HHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHH
Q 002704 323 FRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGR 361 (890)
Q Consensus 323 f~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~ 361 (890)
+.+.+.......++ ++++-|++.+.+..-.+..+-.
T Consensus 175 l~~~a~~~~~~l~~---~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 175 LQKKAKERGIELPE---EVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHTT--S-H---HHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHhCCCCcH---HHHHHHHHhhcCCHHHHHHHHH
Confidence 99988765544333 7788888887766655544433
No 90
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=2.3e-05 Score=84.52 Aligned_cols=196 Identities=12% Similarity=0.083 Sum_probs=110.5
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCC-CCCce-EEEEEeCCCCCHHHHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSP-TNFDL-VILVVVSKDLRLESIQEVIGEK 231 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~-~~wv~~s~~~~~~~~~~~i~~~ 231 (890)
..++|.+...+.+.+.+..+... .+.++|+.|+||+|+|..+++.+.-.. ..... ..-.............+.|...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 56789999999999999887765 588999999999999999887762111 00000 0000000000001111222111
Q ss_pred hcCcc---------cc----ccccCHHHHHHHHHHHh-----cCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEE
Q 002704 232 IGLLN---------ET----WKSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVV 291 (890)
Q Consensus 232 l~~~~---------~~----~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~ii 291 (890)
- .++ +. .....+++ +..+.+.+ .+++-++|+||+... .....+...+.... .+..+|
T Consensus 99 ~-HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp-~~~~~I 175 (365)
T PRK07471 99 A-HGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP-ARSLFL 175 (365)
T ss_pred C-CCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC-CCeEEE
Confidence 0 000 00 01112333 33333333 246679999998533 23334433333333 456677
Q ss_pred EecCCHH-HHh-cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHH
Q 002704 292 FTTRSEE-VCG-LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIG 360 (890)
Q Consensus 292 vTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 360 (890)
++|.+.. +.. .......+.+.+++.++..+++.+...... .+....+++.++|.|.....+.
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 7666653 322 223457899999999999999988643211 1223678999999998765543
No 91
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=7.1e-06 Score=93.68 Aligned_cols=193 Identities=15% Similarity=0.135 Sum_probs=110.3
Q ss_pred CcccchHHHHHHHHHHhccCCceE-EEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGI-VGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.|...+..+.... +.++|..|+||||+|+.+++.+... ..+. ...+..-...+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~-~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE-TGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc-cCCC-------CCCCCCCHHHHHHHcCCC
Confidence 457899999999999998877644 6899999999999999998876211 0000 001111122222221100
Q ss_pred Ccc---ccccccCHHHH---HHHHHH-HhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHHh-c
Q 002704 234 LLN---ETWKSRRIEQK---ALDIFR-ILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVF-TTRSEEVCG-L 302 (890)
Q Consensus 234 ~~~---~~~~~~~~~~~---~~~l~~-~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~-~ 302 (890)
... +.......++. ...+.. -..+++-++|||++... ..+..+...+.... ...++|+ ||....+.. .
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp-~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC-CCeEEEEecCCccccchHH
Confidence 000 00001112222 222111 12456779999999643 33444444443333 4455555 444444432 2
Q ss_pred ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHH
Q 002704 303 MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITI 359 (890)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 359 (890)
......|++.+++.++..+.+.+.+.......+ ++....|++.++|.+--+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 334578999999999999999887643332222 256778999999988755443
No 92
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=9.2e-06 Score=92.28 Aligned_cols=193 Identities=14% Similarity=0.137 Sum_probs=108.0
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.+. ...... +. .+......+.|...-.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~---~~----pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQH---GE----PCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCC---CC----CCcccHHHHHHhccCc
Confidence 4578999999999999988765 4689999999999999999988752 111000 00 0000000111110000
Q ss_pred Cc---cccccccCHHHHHHHHHH----HhcCCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCH-HHH-hc
Q 002704 234 LL---NETWKSRRIEQKALDIFR----ILRGKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVFTTRSE-EVC-GL 302 (890)
Q Consensus 234 ~~---~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~-~~ 302 (890)
.. .+.......+.....+.. -..+++-++|||++.... ....+...+.... ...++|++|.+. .+. ..
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp-~~v~fILaTtd~~kL~~TI 166 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP-EHVKFILATTDPHKVPVTV 166 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC-CCcEEEEEeCCccccchHH
Confidence 00 000011112222111111 122556689999986432 2333333333323 445666666543 332 11
Q ss_pred ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHH
Q 002704 303 MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITI 359 (890)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 359 (890)
.+....+.+.+++.++..+.+.+.+.......++ +....|++.++|.+.-+..+
T Consensus 167 rSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~---eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 167 LSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEP---PALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred HHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHhCCCHHHHHHH
Confidence 2334678899999999999999887655433332 67889999999998655433
No 93
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=6.1e-07 Score=69.64 Aligned_cols=56 Identities=41% Similarity=0.609 Sum_probs=26.6
Q ss_pred CCcEEEeecCCCCcccCc-cccCccCCCEEeccCCCccccch-HHhcCCcCCEeeccCC
Q 002704 563 SLKVLNLSRYMGLLELPS-GISKLVSLEHLDLSTSLISEIPE-ELKALVNLKCLNLENT 619 (890)
Q Consensus 563 ~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~ 619 (890)
+|++|+++ ++.+..+|. .+.++++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~-~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLS-NNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEET-SSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECC-CCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 44555555 334444442 34445555555555555554433 3444555555555444
No 94
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.1e-05 Score=91.01 Aligned_cols=180 Identities=14% Similarity=0.168 Sum_probs=108.1
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCC-------------------CCceEEEEE
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPT-------------------NFDLVILVV 214 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 214 (890)
..+||-+..++.+..++..+... .+.++|+.|+||||+|+.+++.+.. .. .|.-++.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC-EKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC-CCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 45789999999999999887665 4789999999999999999887621 11 111122222
Q ss_pred eCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEE
Q 002704 215 VSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVF 292 (890)
Q Consensus 215 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv 292 (890)
.+....++++ +.+++.+.. .-..++.-++|+|+|... .....+...+.... ...++|+
T Consensus 95 aas~~~v~~i-R~l~~~~~~------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp-~~~~fIl 154 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPY------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP-SHVKFIL 154 (509)
T ss_pred ccccCCHHHH-HHHHHHHhh------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC-CCeEEEE
Confidence 2222222221 112211110 011355668999999643 33444444443333 4566666
Q ss_pred ecCC-HHHHh-cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHH
Q 002704 293 TTRS-EEVCG-LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALIT 358 (890)
Q Consensus 293 TtR~-~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 358 (890)
+|.+ ..+.. ..+....+++.+++.++..+.+.+.+.......++ +....|++.++|.+.-+..
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~---~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFEN---AALDLLARAANGSVRDALS 219 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHH
Confidence 5543 33322 22345678899999999888877776544333222 5677889999998865443
No 95
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=1.2e-05 Score=90.49 Aligned_cols=195 Identities=12% Similarity=0.112 Sum_probs=108.2
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.+..++..+.. +.+.++|+.|+||||+|+.+++.+. ... |... ..+......+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCC------CCCC-CCCcccHHHHHHHcCCC
Confidence 4578999999999999977654 4688999999999999999988762 111 1110 01111112222211110
Q ss_pred Cccccc---cccCHHHH---HHHHHHH-hcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHHh-c
Q 002704 234 LLNETW---KSRRIEQK---ALDIFRI-LRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVF-TTRSEEVCG-L 302 (890)
Q Consensus 234 ~~~~~~---~~~~~~~~---~~~l~~~-l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~-~ 302 (890)
...... .....++. ...+... ..+++-++|+|++... ..+..+...+.... ....+|+ |+....+.. .
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp-~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP-KHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC-CcEEEEEECCChHhhhHHH
Confidence 000000 00112221 1111110 1123346999998543 33444444443333 3455554 444444432 2
Q ss_pred ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchh-HHHHHHH
Q 002704 303 MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPL-ALITIGR 361 (890)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~~~ 361 (890)
......+++.+++.++....+...+.......++ +.+..+++.++|.+. |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~---eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIKIED---NAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 3345688999999999999998876544322232 667889999999765 4444443
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.27 E-value=4.8e-06 Score=84.76 Aligned_cols=170 Identities=12% Similarity=0.077 Sum_probs=97.0
Q ss_pred cchHHHH-HHHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCc
Q 002704 158 VGLQSQL-EEVWRCLVE-EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLL 235 (890)
Q Consensus 158 ~Gr~~~~-~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 235 (890)
.|..... ..+.++... .....+.|+|..|+|||+||+.+++... .... ...+++..... ..+
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~------~~~------- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPL------LAF------- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhH------HHH-------
Confidence 3544333 444444332 3456889999999999999999998762 1222 34444432211 000
Q ss_pred cccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcccc--ccccccCCCCCCCCc-EEEEecCCHHHH--------hccc
Q 002704 236 NETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRVDL--TKVGVPLPSSQTSAS-KVVFTTRSEEVC--------GLME 304 (890)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~--~~~~~~l~~~~~~gs-~iivTtR~~~v~--------~~~~ 304 (890)
... ...-+||+||+.....+ ..+...+......+. .||+|++..... ..+.
T Consensus 86 -----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 011 22347889999543221 222222222111333 466776653321 1223
Q ss_pred CCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHhc
Q 002704 305 AHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMA 364 (890)
Q Consensus 305 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~ 364 (890)
....+++.++++++-..++.+.+.......+ ++....+++.+.|.+..+..+...+.
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3468899999998877777765433333333 37788888899999998877666553
No 97
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=1.9e-05 Score=85.83 Aligned_cols=186 Identities=10% Similarity=0.032 Sum_probs=103.3
Q ss_pred CcccchHHHHHHHHHHhccCC----------ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVEEP----------VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESI 224 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 224 (890)
..++|.+..++.+..++..+. ...+.++|+.|+||||+|+.++..+.-. ..- + .....-..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~-~~~----~----~~Cg~C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT-DPD----E----PGCGECRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC-CCC----C----CCCCCCHH
Confidence 357899999999999997653 4568899999999999999998765211 000 0 00000011
Q ss_pred HHHHHHHhcCc----cccccccCHHHHHHHHHHHh-----cCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEe
Q 002704 225 QEVIGEKIGLL----NETWKSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFT 293 (890)
Q Consensus 225 ~~~i~~~l~~~----~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivT 293 (890)
.+.+...-... .........++.. .+.+.+ .+++-++|+|++... .....+...+.... .+..+|++
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~-~~~~fIL~ 153 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP-PRTVWLLC 153 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC-CCCeEEEE
Confidence 11111000000 0000011122211 222221 244558888998643 22233433333333 45666666
Q ss_pred cCCH-HHHhc-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHH
Q 002704 294 TRSE-EVCGL-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITI 359 (890)
Q Consensus 294 tR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 359 (890)
|.+. .+... .+....+.+.+++.++..+.+.+..+. + .+.+..+++.++|.|.....+
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 6553 33322 234578999999999999988754321 1 256788999999999765443
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=8.1e-06 Score=90.00 Aligned_cols=198 Identities=12% Similarity=0.124 Sum_probs=111.2
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEE-eCCCCCHHHHHHHHHHHh
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVV-VSKDLRLESIQEVIGEKI 232 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 232 (890)
..++|.+..++.+..++..+.+. .+.++|+.|+||||+|+.+++.+. -........|.. +......-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 45789999999999999887765 488999999999999999988762 111111111110 001111111112222111
Q ss_pred cCccccc---cccCHHHHHHHHHHHh-----cCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEec-CCHHHHh
Q 002704 233 GLLNETW---KSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTT-RSEEVCG 301 (890)
Q Consensus 233 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTt-R~~~v~~ 301 (890)
....... .....++..+ +.+.+ .+++-++|+|++... ..+..+...+.... ..+.+|++| +...+..
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~-~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP-PHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC-CCeEEEEEeCChHHhHH
Confidence 0000000 0111222222 22222 245568899998643 24555554444433 455665554 4444432
Q ss_pred c-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHH
Q 002704 302 L-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALIT 358 (890)
Q Consensus 302 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 358 (890)
. ......+++.+++.++..+.+...+.......+ .+.+..|++.++|.+--+..
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2 223457889999999999988887654332223 27888999999998764433
No 99
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.24 E-value=2.7e-06 Score=89.61 Aligned_cols=96 Identities=20% Similarity=0.244 Sum_probs=64.8
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC--CHHHHHHHHHHHhcCccccccccC
Q 002704 167 VWRCLVE-EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL--RLESIQEVIGEKIGLLNETWKSRR 243 (890)
Q Consensus 167 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 243 (890)
+++++.. +.-...+|+|++|+||||||++||+... ..+|+.++||.+.+.. .+.++++.|...+-.. +.+...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s--t~d~~~ 234 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS--TFDEPA 234 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE--CCCCCH
Confidence 3444433 3446789999999999999999999983 3499999999999987 7888888886322111 111111
Q ss_pred HH---------HHHHHHHHHhcCCeEEEEEecCC
Q 002704 244 IE---------QKALDIFRILRGKKFVVLLDDIW 268 (890)
Q Consensus 244 ~~---------~~~~~l~~~l~~~~~LlvlDdv~ 268 (890)
.. +.+++++ -.+++++|++|++.
T Consensus 235 ~~~~~~a~~~ie~Ae~~~--e~G~dVlL~iDsIt 266 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLV--EHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHH--HcCCCEEEEEEChH
Confidence 11 1111111 36799999999983
No 100
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=2.9e-06 Score=99.12 Aligned_cols=110 Identities=25% Similarity=0.357 Sum_probs=91.7
Q ss_pred ceEEEEcccccccc-cc-CCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEec
Q 002704 516 KLRRLSLMENQIEN-LS-EVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDL 593 (890)
Q Consensus 516 ~l~~L~l~~~~~~~-l~-~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L 593 (890)
.++.|++++|.+.. +| .+.++++|+.|+|++|.+.+.+|.. ++.+++|++|+|++|.....+|..+++|++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 47889999998864 23 3788999999999999988888877 899999999999966555689999999999999999
Q ss_pred cCCCcc-ccchHHhcC-CcCCEeeccCCCCccccC
Q 002704 594 STSLIS-EIPEELKAL-VNLKCLNLENTGLLLKIP 626 (890)
Q Consensus 594 ~~~~i~-~lp~~l~~l-~~L~~L~l~~~~~~~~~p 626 (890)
++|.++ .+|..++.+ .++..+++.+|..+...|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999988 789888764 577889998886444333
No 101
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.6e-05 Score=86.53 Aligned_cols=180 Identities=17% Similarity=0.191 Sum_probs=110.2
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCC------------------CCCceEEEEEe
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSP------------------TNFDLVILVVV 215 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~ 215 (890)
..++|.+..++.+..++..+... .+.++|+.|+||||+|+.+++.+.... ..+.-++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 46789999999998888877765 799999999999999999987541000 01112233333
Q ss_pred CCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEe
Q 002704 216 SKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFT 293 (890)
Q Consensus 216 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivT 293 (890)
+....++++- .|.+.... .-..++.-++|+|++... ..+..+...+.... ...++|++
T Consensus 93 as~~~vddIR-~Iie~~~~------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp-~~v~fIla 152 (491)
T PRK14964 93 ASNTSVDDIK-VILENSCY------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA-PHVKFILA 152 (491)
T ss_pred ccCCCHHHHH-HHHHHHHh------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC-CCeEEEEE
Confidence 2222222211 11111100 001245668999998543 23444444444433 55666655
Q ss_pred c-CCHHHHhc-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 294 T-RSEEVCGL-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 294 t-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
| ....+... ......+.+.+++.++..+.+.+.+.......++ +....|++.++|.+..+.
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~---eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDE---ESLKLIAENSSGSMRNAL 215 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 5 44444332 3345788999999999999999887655433333 677889999999876443
No 102
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.23 E-value=3.2e-06 Score=92.41 Aligned_cols=171 Identities=19% Similarity=0.211 Sum_probs=99.5
Q ss_pred CcccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCH
Q 002704 155 PTMVGLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRL 221 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (890)
..+.|++++++++.+.+.. ...+.+.++|++|+|||++|+.+++.. ...|- .+. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~~-----~v~----~ 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFI-----RVV----G 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCEE-----ecc----h
Confidence 4578999999999887732 224569999999999999999999987 33332 221 1
Q ss_pred HHHHHHHHHHhcCccccccccCHHHHHHHHHHHh-cCCeEEEEEecCCCcc----------------ccccccccCCCC-
Q 002704 222 ESIQEVIGEKIGLLNETWKSRRIEQKALDIFRIL-RGKKFVVLLDDIWQRV----------------DLTKVGVPLPSS- 283 (890)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~----------------~~~~~~~~l~~~- 283 (890)
..+... ..+ ........+.+.. ...+.+|+|||++... .+..+...+...
T Consensus 190 ~~l~~~---~~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRK---YIG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHH---hhh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 111111 011 0111222222222 3467899999986421 011111111111
Q ss_pred CCCCcEEEEecCCHHHH-----hcccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCch
Q 002704 284 QTSASKVVFTTRSEEVC-----GLMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLP 353 (890)
Q Consensus 284 ~~~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (890)
...+.+||.||...... .....+..+.+...+.++..++|..++.......+-. ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 11467788888764322 1112356789999999999999998875543222212 456677777764
No 103
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=1.4e-05 Score=85.76 Aligned_cols=196 Identities=12% Similarity=0.101 Sum_probs=111.9
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCC-CCceEEEEEeCCCCCHHHHHHHHHHHh
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPT-NFDLVILVVVSKDLRLESIQEVIGEKI 232 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l 232 (890)
..++|-+...+.+...+..+... .+.|+|+.|+||||+|+.+++.+..... .+... ............+.|...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 46789999999999999887654 5899999999999999999887732100 01111 0011111122333333221
Q ss_pred -------cCcc-cc----ccccCHHHHHHHHHHHh-----cCCeEEEEEecCCCc--cccccccccCCCCCCCCcEE-EE
Q 002704 233 -------GLLN-ET----WKSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKV-VF 292 (890)
Q Consensus 233 -------~~~~-~~----~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~i-iv 292 (890)
..+. +. .....+++. ..+.+++ .+++-++|+|++... .....+...+.... ....+ ++
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp-~~~~fiLi 177 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP-ARALFILI 177 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC-CCceEEEE
Confidence 0000 00 011123332 2344433 346679999999643 22333433333323 33444 44
Q ss_pred ecCCHHHHhc-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHH
Q 002704 293 TTRSEEVCGL-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIG 360 (890)
Q Consensus 293 TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 360 (890)
|++...+... .+....+++.+++.++..+++.+...... .+ .+....|++.++|.|.....+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~---~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SD---GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 5444333221 22346899999999999999988432211 11 2567789999999998765444
No 104
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.21 E-value=3.7e-05 Score=75.58 Aligned_cols=160 Identities=17% Similarity=0.173 Sum_probs=92.7
Q ss_pred HHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCC-------------------CCCceEEEEEeC-CCCCHHHH
Q 002704 166 EVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSP-------------------TNFDLVILVVVS-KDLRLESI 224 (890)
Q Consensus 166 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~s-~~~~~~~~ 224 (890)
.+.+.+..+.. ..+.++|+.|+||||+|+.+.+...... .+.|. .++... .....+.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 45556666655 5789999999999999999988762110 11121 111111 11111111
Q ss_pred HHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCH-HHHh
Q 002704 225 QEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRSE-EVCG 301 (890)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~ 301 (890)
+.+.+.+... -..+.+-++|+||+... ..+..+...+.... ..+.+|++|++. .+..
T Consensus 82 -~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 82 -RELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPP-PNTLFILITPSPEKLLP 141 (188)
T ss_pred -HHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCC-CCeEEEEEECChHhChH
Confidence 1111111100 01255668999998543 23444544444433 556677666653 2222
Q ss_pred c-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhH
Q 002704 302 L-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLA 355 (890)
Q Consensus 302 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPla 355 (890)
. ......+.+.+++.++..+.+.+. + .+ ++.+..|++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g-----i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G-----IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C-----CC---HHHHHHHHHHcCCCccc
Confidence 1 223468999999999999999887 2 12 26788999999999853
No 105
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.3e-05 Score=89.48 Aligned_cols=197 Identities=14% Similarity=0.170 Sum_probs=110.8
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCC-CCceEEEEEeCCCCCHHHHHHHHHHHh
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPT-NFDLVILVVVSKDLRLESIQEVIGEKI 232 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l 232 (890)
..++|-+..++.|..++..++. ..+.++|..|+||||+|+.+++.+..... ....... ..+......+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 4578999999999999988766 45689999999999999999877621000 0000000 0111112222221100
Q ss_pred cCcc---ccccccCHHHHHHHHHHH----hcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEec-CCHHHH-h
Q 002704 233 GLLN---ETWKSRRIEQKALDIFRI----LRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTT-RSEEVC-G 301 (890)
Q Consensus 233 ~~~~---~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTt-R~~~v~-~ 301 (890)
.... +.......++..+.+... ..++.-++|||+|... ..+..+...+.... ...++|++| ....+. .
T Consensus 92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP-~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP-EYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC-CCeEEEEEECCchhhhHH
Confidence 0000 000111222222222110 1244558899999643 33444544444433 455666554 444443 2
Q ss_pred cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHH
Q 002704 302 LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITI 359 (890)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 359 (890)
..+....+++.+++.++..+.+.+.+.......++ +....|++.++|.+.-+..+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~---~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEP---QALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHH
Confidence 23456789999999999999998877654433332 67788999999987655443
No 106
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.6e-05 Score=84.59 Aligned_cols=184 Identities=13% Similarity=0.186 Sum_probs=106.1
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCC-----CCCCceE-EEEEeCCCCCHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGS-----PTNFDLV-ILVVVSKDLRLESIQEV 227 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~-~wv~~s~~~~~~~~~~~ 227 (890)
..++|.+..++.+..++..+.. +.+.++|++|+||||+|+.+.+..... ...|... +-+.........++ +.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HH
Confidence 4568999999999999987655 488899999999999999998876210 0112111 11111111111111 11
Q ss_pred HHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEec-CCHHHHh-cc
Q 002704 228 IGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVFTT-RSEEVCG-LM 303 (890)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTt-R~~~v~~-~~ 303 (890)
+.+.+... -..+++-++|+|++.... .+..+...+.... ....+|++| ....+.. ..
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~-~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPP-AHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCC-CceEEEEEeCCcccCCHHHH
Confidence 11111100 012345579999985432 2444433333322 345555554 3333322 22
Q ss_pred cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHH-HHHHH
Q 002704 304 EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLAL-ITIGR 361 (890)
Q Consensus 304 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai-~~~~~ 361 (890)
+....+++.+++.++....+...+.......++ +.+..+++.++|.+-.+ ..+-.
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~---~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFED---DALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhCCCCHHHHHHHHHH
Confidence 334578999999999999998877554433333 77888899999876543 44433
No 107
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=1.1e-05 Score=89.86 Aligned_cols=166 Identities=11% Similarity=0.075 Sum_probs=104.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILR 256 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (890)
.-+.|+|..|+|||+|++++++... ....-..++++ +..++...+...++... .....+.+.++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~-~~~~~~~v~yv------~~~~f~~~~~~~l~~~~---------~~~~~~~~~~~ 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIE-SNFSDLKVSYM------SGDEFARKAVDILQKTH---------KEIEQFKNEIC 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHH-HhCCCCeEEEE------EHHHHHHHHHHHHHHhh---------hHHHHHHHHhc
Confidence 4689999999999999999998662 11222344454 34566677766654210 12233344444
Q ss_pred CCeEEEEEecCCCcc---c-cccccccCCCCCCCCcEEEEecCCH---------HHHhcccCCceeecCCCChhhHHHHH
Q 002704 257 GKKFVVLLDDIWQRV---D-LTKVGVPLPSSQTSASKVVFTTRSE---------EVCGLMEAHKKFKVQCLSGNDAWELF 323 (890)
Q Consensus 257 ~~~~LlvlDdv~~~~---~-~~~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 323 (890)
. .-+||+||+.... . .+.+...+......|..||+|+... .+..++...-.+.+++++.++..+++
T Consensus 206 ~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 Q-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred c-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 3 3478899995321 1 1233222222112455788887643 23344556678889999999999999
Q ss_pred HHHhcCCcc--CCCccHHHHHHHHHhHhCCchhHHHHHHHH
Q 002704 324 RQKVGEETL--NCHPYILELAQTVTKECGGLPLALITIGRA 362 (890)
Q Consensus 324 ~~~~~~~~~--~~~~~l~~~~~~i~~~c~GlPlai~~~~~~ 362 (890)
.+++..... ..+ +++..-|++.++|.|-.+..+...
T Consensus 285 ~~~~~~~gl~~~l~---~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 285 KKEIKNQNIKQEVT---EEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHhcCCCCCCC---HHHHHHHHHccCCCHHHHHHHHHH
Confidence 998764321 122 478899999999999877655533
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.8e-05 Score=87.37 Aligned_cols=197 Identities=12% Similarity=0.104 Sum_probs=111.1
Q ss_pred CcccchHHHHHHHHHHhccCCceE-EEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGI-VGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.|..++..+.... +.++|+.|+||||+|+.+++.+.-. ...+ + ..++.-...+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~---~----~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA-QGPT---A----TPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-cCCC---C----CcccccHHHHHhhcccC
Confidence 467899999999999998877655 6899999999999999999876211 1000 0 00011111111111000
Q ss_pred Ccc-----ccccccCHHHH---HHHHHHH-hcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHHh
Q 002704 234 LLN-----ETWKSRRIEQK---ALDIFRI-LRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVF-TTRSEEVCG 301 (890)
Q Consensus 234 ~~~-----~~~~~~~~~~~---~~~l~~~-l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~ 301 (890)
... +......+++. ...+... ..+++-++|+|++... .....+...+.... ....+|+ ||....+..
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp-~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP-EHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC-CCeEEEEEeCChHhhHH
Confidence 000 00000112221 1111111 1245568899998533 33444444444433 4455554 555555433
Q ss_pred c-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchh-HHHHHHHHh
Q 002704 302 L-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPL-ALITIGRAM 363 (890)
Q Consensus 302 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~~~~l 363 (890)
. .+....+++.+++.++..+.+.+.+.......++ +....|++.++|.+- |+..+-.++
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~---~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDD---AVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 3345789999999999999988876554332232 567888999999875 444444443
No 109
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=2.4e-05 Score=88.84 Aligned_cols=184 Identities=15% Similarity=0.198 Sum_probs=107.4
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCC------------------CCCceEEEEEe
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSP------------------TNFDLVILVVV 215 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~ 215 (890)
..++|-+..++.+..++..+... .+.++|+.|+||||+|+.+++.+.-.. +.|.-.+++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 45789999999999999886665 568999999999999999987762100 00111222221
Q ss_pred CCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEe
Q 002704 216 SKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVFT 293 (890)
Q Consensus 216 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iivT 293 (890)
+....++++ +.+.+.+.. .-..+++-++|+|++.... ....+...+.... ....+|++
T Consensus 96 ~~~~~vd~i-r~l~~~~~~------------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp-~~~~fIL~ 155 (527)
T PRK14969 96 ASNTQVDAM-RELLDNAQY------------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP-EHVKFILA 155 (527)
T ss_pred cccCCHHHH-HHHHHHHhh------------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC-CCEEEEEE
Confidence 111111111 111111100 0013566799999996432 2344444443433 45566655
Q ss_pred cCC-HHHHh-cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchh-HHHHHHH
Q 002704 294 TRS-EEVCG-LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPL-ALITIGR 361 (890)
Q Consensus 294 tR~-~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~~~ 361 (890)
|.+ +.+.. ..+....+++.+++.++..+.+.+.+.......+ ++....|++.++|.+- |+..+-.
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 543 33321 1223468899999999999988887654332222 2567889999999876 3344333
No 110
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=3.2e-05 Score=91.62 Aligned_cols=189 Identities=10% Similarity=0.071 Sum_probs=107.5
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.|..++..+.+. .+.++|+.|+||||+|+.+++.+.-. ..... ..+..-.-.+.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~-~~~~~-------~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV-EGPTS-------TPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc-cCCCC-------CCCcccHHHHHHHcCCC
Confidence 45789999999999999887665 47899999999999999998887211 11000 00000000111110000
Q ss_pred Ccc-----ccccccCHHHHHHHHHH-----HhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEec-CCHHHH
Q 002704 234 LLN-----ETWKSRRIEQKALDIFR-----ILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTT-RSEEVC 300 (890)
Q Consensus 234 ~~~-----~~~~~~~~~~~~~~l~~-----~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTt-R~~~v~ 300 (890)
... +......+++... +.+ -..++.-++|||++... ..+..+...+..-. ..+.+|++| ....+.
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP-~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP-EHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC-CCeEEEEEeCChhhhh
Confidence 000 0000011222211 111 12355568889998643 33444544444434 455555544 444444
Q ss_pred hc-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHH
Q 002704 301 GL-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLAL 356 (890)
Q Consensus 301 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 356 (890)
.. ......|.+.+++.++..+++.+.+.......++ +....|++.++|.+..+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~---eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEP---GVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHH
Confidence 32 3346789999999999999988876544332222 56678999999988544
No 111
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.15 E-value=2.8e-07 Score=102.86 Aligned_cols=124 Identities=32% Similarity=0.447 Sum_probs=57.9
Q ss_pred ceEEEEcccccccc-ccCCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEecc
Q 002704 516 KLRRLSLMENQIEN-LSEVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLS 594 (890)
Q Consensus 516 ~l~~L~l~~~~~~~-l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~ 594 (890)
.+..+++..|.+.. ...+..+++|..|++.+|.+.+.. .. +..+++|++|+|+ ++.|+.+.. +..+..|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~-~~-l~~~~~L~~L~ls-~N~I~~i~~-l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIE-NL-LSSLVNLQVLDLS-FNKITKLEG-LSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcc-cc-hhhhhcchheecc-ccccccccc-hhhccchhhheec
Confidence 34444455555444 222455555555555544443221 11 3445555555555 444444432 4444555555555
Q ss_pred CCCccccchHHhcCCcCCEeeccCCCCccccCh-hhhcCCccCcEeeccCCCc
Q 002704 595 TSLISEIPEELKALVNLKCLNLENTGLLLKIPL-QLISHFSRLHVLRMFGNGY 646 (890)
Q Consensus 595 ~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~ 646 (890)
+|.|+.++ .+..+++|+.+++++|. +..+.. . ...+.+|+.+.+.+|.+
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCch
Confidence 55555443 23335555555555553 222222 1 23445555555555444
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=3.6e-05 Score=88.10 Aligned_cols=196 Identities=12% Similarity=0.108 Sum_probs=111.5
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCCCCc--eEEEEEeCCCCCHHHHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPTNFD--LVILVVVSKDLRLESIQEVIGEK 231 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~ 231 (890)
..++|.+..++.+..++..++.. .+.++|+.|+||||+|+.+++.+.- ..... ...+- .+....-.+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c-~~~~~~~~~~~~----~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY-EGPDGDGGPTID----LCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc-CCccccCCCccc----cCcccHHHHHHhcC
Confidence 45789999999999999887654 6899999999999999999887621 11100 00000 00111111222211
Q ss_pred hcCcc---ccccccCHHHHHHHHHHH-----hcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEec-CCHHHH
Q 002704 232 IGLLN---ETWKSRRIEQKALDIFRI-----LRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTT-RSEEVC 300 (890)
Q Consensus 232 l~~~~---~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTt-R~~~v~ 300 (890)
..... +.......++... +.+. ..+++-++|+|++... .....+...+.... ..+++|++| ....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp-~~~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPP-PHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCC-CCeEEEEEeCChhhhh
Confidence 11000 0001112222221 1111 1244557899998543 23444444443333 456665544 444443
Q ss_pred hc-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHH
Q 002704 301 GL-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIG 360 (890)
Q Consensus 301 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 360 (890)
.. ......+.+.+++.++....+.+.+........+ +....|++.++|.+.-+....
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~---eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVED---EALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHH
Confidence 22 2345688999999999999999887554433332 678889999999987654433
No 113
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.14 E-value=8.1e-07 Score=89.92 Aligned_cols=217 Identities=21% Similarity=0.176 Sum_probs=103.2
Q ss_pred CCCCcceEEEeccCCCccccC---hhhhccCCCCcEEEeecCCC----CcccCcc-------ccCccCCCEEeccCCCcc
Q 002704 534 PTCPHLLTLFLNNDGLLRIIN---SDFLQSMPSLKVLNLSRYMG----LLELPSG-------ISKLVSLEHLDLSTSLIS 599 (890)
Q Consensus 534 ~~~~~Lr~L~L~~~~~~~~~~---~~~~~~l~~L~~L~L~~~~~----i~~lp~~-------i~~L~~L~~L~L~~~~i~ 599 (890)
.....+..|+|++|.+...-. ...+.+.+.|+.-+++ .-. ...+|+. +-.+++|++|+||+|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s-d~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS-DMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH-hhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 334455555555554422110 1114445566666665 221 1233332 223456667777666433
Q ss_pred -----ccchHHhcCCcCCEeeccCCCCccccChh-------------hhcCCccCcEeeccCCCcCccCCCCCCccccCC
Q 002704 600 -----EIPEELKALVNLKCLNLENTGLLLKIPLQ-------------LISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGG 661 (890)
Q Consensus 600 -----~lp~~l~~l~~L~~L~l~~~~~~~~~p~~-------------~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 661 (890)
.+-.-+..++.|++|+|.+|. ++....+ .+..-++|+++....|.....+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g----------- 173 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG----------- 173 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc-----------
Confidence 222234556677777776664 2211111 1233455666666555543210
Q ss_pred CcccHHHhcCCCCCceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcceEE
Q 002704 662 GELLVEELLGLKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELK 741 (890)
Q Consensus 662 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~ 741 (890)
.......++.++.|+.+.+..+.+..- +. ..-...+..+++|+.|+|.+|. ++.-.
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~e----------------------G~-~al~eal~~~~~LevLdl~DNt-ft~eg 229 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPE----------------------GV-TALAEALEHCPHLEVLDLRDNT-FTLEG 229 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCc----------------------hh-HHHHHHHHhCCcceeeecccch-hhhHH
Confidence 111233444555666665554433210 00 0111235667888888888772 22110
Q ss_pred ecccCccccccCCcccEEEEecCCCCCCCCc-------ccccCCCCeEEEecCcc
Q 002704 742 IDYAGEVQHFGFHSLQSFEVNFCSKLKDLTL-------LVLIPNLKYIAVTDCKA 789 (890)
Q Consensus 742 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-------l~~l~~L~~L~L~~c~~ 789 (890)
..... -....+++|+.|++++| .+++=.. -...|+|+.|.+.+|..
T Consensus 230 s~~La-kaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 230 SVALA-KALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHHHH-HHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 00000 01134678888888888 4554211 12367778887777653
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=3.7e-05 Score=87.11 Aligned_cols=197 Identities=14% Similarity=0.144 Sum_probs=112.0
Q ss_pred CcccchHHHHHHHHHHhccCC-ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEP-VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|-+..++.|..++..+. ...+.++|+.|+||||+|+.+++.+.. ..... ...++.-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C-~~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC-ETAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc-cCCCC-------CCCCcccHHHHHHhcCCC
Confidence 456899988888888887765 467889999999999999999987621 11000 001111111111211100
Q ss_pred Cccccc---cccCHHHHHHHHHHH-----hcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCC-HHHHhc
Q 002704 234 LLNETW---KSRRIEQKALDIFRI-----LRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRS-EEVCGL 302 (890)
Q Consensus 234 ~~~~~~---~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~~~ 302 (890)
...... ....+++.. .+.+. ..+++-++|+|++... ..+..+...+.... ....+|++|.+ ..+...
T Consensus 88 pDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP-ARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-CCEEEEEecCChhhhhHH
Confidence 000000 001111111 12211 2356678999999543 33444444443333 34555555544 444322
Q ss_pred -ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCch-hHHHHHHHHhc
Q 002704 303 -MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLP-LALITIGRAMA 364 (890)
Q Consensus 303 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP-lai~~~~~~l~ 364 (890)
......+++.+++.++..+.+.+.+.......+ .+.++.|++.++|.+ .|+..+..++.
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 233467899999999999999887654433223 267888999999965 67777765543
No 115
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.12 E-value=2.8e-06 Score=65.84 Aligned_cols=60 Identities=37% Similarity=0.533 Sum_probs=49.3
Q ss_pred CcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccC-ccccCccCCCEEeccCCCc
Q 002704 537 PHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELP-SGISKLVSLEHLDLSTSLI 598 (890)
Q Consensus 537 ~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp-~~i~~L~~L~~L~L~~~~i 598 (890)
++|++|++++|.+ ..+|...|.++++|++|+++ ++.+..+| ..+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTE-SEECTTTTTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5788999997755 46777778999999999999 66777765 4779999999999999875
No 116
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.10 E-value=4.2e-05 Score=85.06 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=94.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILR 256 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (890)
..+.|+|..|+|||+|++++++... ....-..+++++ ..++...+...+.. ...+.. .+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~------~~~~~~~~~~~~~~-------~~~~~~----~~~~~ 198 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVS------SEKFTNDFVNALRN-------NKMEEF----KEKYR 198 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEE------HHHHHHHHHHHHHc-------CCHHHH----HHHHH
Confidence 4689999999999999999999873 111123455653 33444455544431 122222 23332
Q ss_pred CCeEEEEEecCCCccc----cccccccCCCCCCCCcEEEEecCCH-H--------HHhcccCCceeecCCCChhhHHHHH
Q 002704 257 GKKFVVLLDDIWQRVD----LTKVGVPLPSSQTSASKVVFTTRSE-E--------VCGLMEAHKKFKVQCLSGNDAWELF 323 (890)
Q Consensus 257 ~~~~LlvlDdv~~~~~----~~~~~~~l~~~~~~gs~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf 323 (890)
+ .-+|||||+..... .+.+...+......+..+|+|+... . +...+.....+.+++.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 23888999964211 1122222211111345678877642 1 2233444567899999999999999
Q ss_pred HHHhcCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 324 RQKVGEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
.+.+.......+ +++...|++.+.|.+-.+.
T Consensus 278 ~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 998866543333 3778888888888776543
No 117
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.09 E-value=9.1e-06 Score=86.23 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=62.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCC--CCHHHHHHHHHHHhcCccccccccCH------H
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKD--LRLESIQEVIGEKIGLLNETWKSRRI------E 245 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~------~ 245 (890)
+.-..++|+|++|+|||||++.+++.+. +++|+..+|+.+.+. .++.++++.|...+-... .+.... .
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast--~d~p~~~~~~va~ 241 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPASRHVQVAE 241 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEec--CCCChHHHHHHHH
Confidence 3446899999999999999999999873 448999999999977 689999999954332111 011000 1
Q ss_pred HHHHHHHH-HhcCCeEEEEEecCC
Q 002704 246 QKALDIFR-ILRGKKFVVLLDDIW 268 (890)
Q Consensus 246 ~~~~~l~~-~l~~~~~LlvlDdv~ 268 (890)
...+.... .-.+++++|++|++.
T Consensus 242 ~v~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 242 MVIEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHHHHcCCCeEEEEEChh
Confidence 11111111 136899999999983
No 118
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=7.5e-05 Score=85.63 Aligned_cols=201 Identities=12% Similarity=0.128 Sum_probs=110.7
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEE-eCCCCCHHHHHHHHHHHh
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVV-VSKDLRLESIQEVIGEKI 232 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 232 (890)
..++|.+..++.+..++..+.+. .+.++|+.|+||||+|+.+++.+. -....+...|.. +...+..-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 45789999999999999887664 488999999999999999988762 111111011111 001111111122221110
Q ss_pred cCccccc---cccCHHHHHHHHHHH----hcCCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEE-ecCCHHHHh-
Q 002704 233 GLLNETW---KSRRIEQKALDIFRI----LRGKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVF-TTRSEEVCG- 301 (890)
Q Consensus 233 ~~~~~~~---~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~- 301 (890)
....... .....++....+... ..+++-++|+||+.... ....+...+.... ..+.+|+ |++...+..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp-~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP-PHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC-CCeEEEEEeCChhhhhHH
Confidence 0000000 111123322221111 22445578999985432 2444444444433 3455554 444444433
Q ss_pred cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchh-HHHHHH
Q 002704 302 LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPL-ALITIG 360 (890)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~~ 360 (890)
.......+++.+++.++....+.+.+.......+ .+.+..|++.++|..- |+..+-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHH
Confidence 2345678999999999998888876654332223 2678899999999655 444333
No 119
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=0.0002 Score=76.02 Aligned_cols=205 Identities=17% Similarity=0.160 Sum_probs=124.1
Q ss_pred CCcccchHHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHH
Q 002704 154 EPTMVGLQSQLEEVWRCLVE----EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIG 229 (890)
Q Consensus 154 ~~~~~Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (890)
+..++||+.+++.+.+|+.. ...+.+.|.|.+|.|||.+...++.+....... ..++++.+..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 45678999999999999853 566889999999999999999999887211112 2456666665456677777777
Q ss_pred HHhcCccccccccCHHHHHHHHHHHhcC--CeEEEEEecCCCcc--ccccccc--cCCCCCCCCcEEEEecCCH--HHH-
Q 002704 230 EKIGLLNETWKSRRIEQKALDIFRILRG--KKFVVLLDDIWQRV--DLTKVGV--PLPSSQTSASKVVFTTRSE--EVC- 300 (890)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~--~~~~~~~--~l~~~~~~gs~iivTtR~~--~v~- 300 (890)
..+-.... ...+..+....+..+..+ ..+|+|+|+.+... .-..+.. .++.. .++++|+.---. +..
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l--p~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL--PNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC--CcceeeeeeehhhhhHHH
Confidence 76622110 112225556666666654 36899999986421 1111111 12222 455555432211 111
Q ss_pred ---hc-----ccCCceeecCCCChhhHHHHHHHHhcCCccCC--CccHHHHHHHHHhHhCCchhHHHHHHHHh
Q 002704 301 ---GL-----MEAHKKFKVQCLSGNDAWELFRQKVGEETLNC--HPYILELAQTVTKECGGLPLALITIGRAM 363 (890)
Q Consensus 301 ---~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~--~~~l~~~~~~i~~~c~GlPlai~~~~~~l 363 (890)
.. .-....+...|.+.++..++|..+........ +..++-.|++++.-.|-+--|+.+.-+++
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11 11345788899999999999999976543221 22344445555555555555655555444
No 120
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00011 Score=82.56 Aligned_cols=182 Identities=13% Similarity=0.139 Sum_probs=105.9
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCC--CC----------------CCceEEEEEe
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGS--PT----------------NFDLVILVVV 215 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~--~~----------------~f~~~~wv~~ 215 (890)
..++|.+..++.+..++..+... .+.++|+.|+||||+|+.++..+... .. .|...+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 45789999999999999876654 46789999999999999998775210 00 0111111111
Q ss_pred CCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHH-HhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEE
Q 002704 216 SKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFR-ILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVF 292 (890)
Q Consensus 216 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv 292 (890)
+....+.+ .......+.. -..+++-++|+|++... .....+...+.... ....+|+
T Consensus 96 as~~gvd~--------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp-~~~v~Il 154 (486)
T PRK14953 96 ASNRGIDD--------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP-PRTIFIL 154 (486)
T ss_pred ccCCCHHH--------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC-CCeEEEE
Confidence 11111110 1111111111 11356679999998643 22344443443333 3444554
Q ss_pred -ecCCHHHHhc-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHH
Q 002704 293 -TTRSEEVCGL-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIG 360 (890)
Q Consensus 293 -TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 360 (890)
||+...+... ......+.+.+++.++....+.+.+.......++ +.+..|++.++|.+..+....
T Consensus 155 ~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~---~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 155 CTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEE---KALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHH
Confidence 4444444322 2344678999999999999988876544333332 667888899999876554443
No 121
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=7.9e-05 Score=85.82 Aligned_cols=185 Identities=11% Similarity=0.106 Sum_probs=105.1
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.+..++..++. ..+.++|+.|+||||+|+.+++.+........ .....-.... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~----------~~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL----------LEPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC----------CCchhHHHHh---hc
Confidence 4578999999999999987665 45689999999999999999877621000000 0000000000 00
Q ss_pred Cccc-----cccccCHHHHHHHHHHHh-----cCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEE-EecCCHHHH
Q 002704 234 LLNE-----TWKSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVV-FTTRSEEVC 300 (890)
Q Consensus 234 ~~~~-----~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~ii-vTtR~~~v~ 300 (890)
...+ .......++ ++.+.+.+ .+++-++|+|++... ..+..+...+.... ....+| +|++...+.
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP-~~tifILaTte~~KLl 162 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP-KHVIFILATTEVHKIP 162 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC-CceEEEEEcCChhhhh
Confidence 0000 000011221 12222222 255668899998533 23444444443333 344444 455555553
Q ss_pred h-cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 301 G-LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 301 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
. .......+.+.+++.++..+.+...+.......+ .+.+..|++.++|.+.-+.
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2 2334568999999999999998876644332222 2567889999999775443
No 122
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=8e-05 Score=85.99 Aligned_cols=179 Identities=13% Similarity=0.198 Sum_probs=109.7
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccC--------------------CCCCCceEEEE
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLG--------------------SPTNFDLVILV 213 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~f~~~~wv 213 (890)
..++|.+..++.+..++..+... .+.++|+.|+||||+|+.++..+.. ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 45789999999999999887665 4789999999999999998876520 0113332 222
Q ss_pred EeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEE
Q 002704 214 VVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVV 291 (890)
Q Consensus 214 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~ii 291 (890)
..+....++++.. ++.++... -..+++=++|+|++... ..+..+...+.... ..+.+|
T Consensus 96 d~~~~~~vd~Ir~-li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp-~~tifI 155 (614)
T PRK14971 96 DAASNNSVDDIRN-LIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP-SYAIFI 155 (614)
T ss_pred cccccCCHHHHHH-HHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCC-CCeEEE
Confidence 2222222222221 11111110 01234558899998543 33445554444433 455555
Q ss_pred E-ecCCHHHHhc-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 292 F-TTRSEEVCGL-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 292 v-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
+ ||+...+... ......+++.+++.++....+.+.+.......++ +.+..|++.++|..--+.
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~---~al~~La~~s~gdlr~al 220 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEP---EALNVIAQKADGGMRDAL 220 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 5 5454544332 3345789999999999999998877554433332 678889999999776443
No 123
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.03 E-value=2.9e-07 Score=101.12 Aligned_cols=163 Identities=21% Similarity=0.263 Sum_probs=83.8
Q ss_pred cCCCcccCCccccccceEEEEccccccccccCCCCC-CcceEEEeccCCC----------ccccChhhhccCCCCcEEEe
Q 002704 501 AGAGFREAPDVIEWEKLRRLSLMENQIENLSEVPTC-PHLLTLFLNNDGL----------LRIINSDFLQSMPSLKVLNL 569 (890)
Q Consensus 501 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~-~~Lr~L~L~~~~~----------~~~~~~~~~~~l~~L~~L~L 569 (890)
...+..+.-++..++.+|+|-+.++.+.....+..+ ..|+.|.-. |.. .+++..+ -.-..|.+.+.
T Consensus 95 pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns--~~Wn~L~~a~f 171 (1096)
T KOG1859|consen 95 PARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS--PVWNKLATASF 171 (1096)
T ss_pred CCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc--hhhhhHhhhhc
Confidence 333444445677788999999998887543322221 123333322 110 0011110 00123555555
Q ss_pred ecCCCCcccCccccCccCCCEEeccCCCccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcCcc
Q 002704 570 SRYMGLLELPSGISKLVSLEHLDLSTSLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSC 649 (890)
Q Consensus 570 ~~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~ 649 (890)
+ |+.+..+..++.-++.|+.|+|+.|+++..- .+..|++|++|||++|. +..+|.-....+. |+.|.+.+|...
T Consensus 172 s-yN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~-- 245 (1096)
T KOG1859|consen 172 S-YNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALT-- 245 (1096)
T ss_pred c-hhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHHH--
Confidence 5 5555555555666666666666666666553 55566666666666663 4555532222333 666666655442
Q ss_pred CCCCCCccccCCCcccHHHhcCCCCCceEEEEecChhh
Q 002704 650 GLYPEDSVLFGGGELLVEELLGLKHLEVLSLTLGSSRA 687 (890)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 687 (890)
.+..+.+|++|+.|+++.|-...
T Consensus 246 ---------------tL~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 246 ---------------TLRGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred ---------------hhhhHHhhhhhhccchhHhhhhc
Confidence 24445555555666665554433
No 124
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.02 E-value=3.2e-05 Score=80.36 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=79.4
Q ss_pred cccchHHHHHHHHH---Hhc------------cCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCC
Q 002704 156 TMVGLQSQLEEVWR---CLV------------EEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLR 220 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~---~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 220 (890)
.++|.+..+++|.+ +.. .+....+.++|++|+||||+|+.+++.+.. ...-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~-~~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKE-MNVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHh-cCcccCCceEEecHH--
Confidence 36787776666543 331 123456889999999999999999876521 111111122332221
Q ss_pred HHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc----------ccccccccCCCCCCCCcEE
Q 002704 221 LESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV----------DLTKVGVPLPSSQTSASKV 290 (890)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------~~~~~~~~l~~~~~~gs~i 290 (890)
++. ... ...........+ +... .-+|++|++.... ....+...+.... ....+
T Consensus 84 --~l~----~~~-------~g~~~~~~~~~~-~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-~~~~v 146 (261)
T TIGR02881 84 --DLV----GEY-------IGHTAQKTREVI-KKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-NEFVL 146 (261)
T ss_pred --Hhh----hhh-------ccchHHHHHHHH-Hhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-CCEEE
Confidence 111 110 011111112222 2222 2488999996421 1222333332322 33455
Q ss_pred EEecCCHHH----------HhcccCCceeecCCCChhhHHHHHHHHhcCCc
Q 002704 291 VFTTRSEEV----------CGLMEAHKKFKVQCLSGNDAWELFRQKVGEET 331 (890)
Q Consensus 291 ivTtR~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 331 (890)
|+++...+. ... ....+++++++.++..+++.+.+....
T Consensus 147 ila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred EecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 666544322 112 234688999999999999988875443
No 125
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00016 Score=81.17 Aligned_cols=178 Identities=13% Similarity=0.173 Sum_probs=109.2
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCC-------------------CCceEEEEE
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPT-------------------NFDLVILVV 214 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 214 (890)
..++|-+..++.+..++..+... ++.++|+.|+||||+|+.+++....... +++ ++.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eld 92 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMD 92 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEec
Confidence 45789999999999999877665 5689999999999999998877521100 111 11221
Q ss_pred eCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH----hcCCeEEEEEecCCCc--cccccccccCCCCCCCCc
Q 002704 215 VSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI----LRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSAS 288 (890)
Q Consensus 215 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs 288 (890)
.+.... .++....+... ..+++-++|+|++... .....+...+.... ..+
T Consensus 93 aas~~g-----------------------Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp-~~t 148 (535)
T PRK08451 93 AASNRG-----------------------IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP-SYV 148 (535)
T ss_pred cccccC-----------------------HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC-Cce
Confidence 111111 22222222110 1245668899998543 22334444443333 556
Q ss_pred EEEEecCCH-HHHh-cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHH
Q 002704 289 KVVFTTRSE-EVCG-LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIG 360 (890)
Q Consensus 289 ~iivTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 360 (890)
++|++|.+. .+.. .......+++.+++.++..+.+.+.+.......+ ++.+..|++.++|.+.-+..+.
T Consensus 149 ~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 149 KFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred EEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 677666553 2221 1223568899999999999999887755443333 3678899999999986554443
No 126
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.00 E-value=3.9e-05 Score=84.21 Aligned_cols=171 Identities=16% Similarity=0.220 Sum_probs=97.7
Q ss_pred CcccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCH
Q 002704 155 PTMVGLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRL 221 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (890)
..+.|++.+++++.+.+.. ...+.|.++|++|+|||++|+.+++.. ...| +.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~-----i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCE-----EEeeh----
Confidence 4578999999999887631 345679999999999999999999876 2232 22211
Q ss_pred HHHHHHHHHHhcCccccccccCHHHHHHHHHHHh-cCCeEEEEEecCCCcc------------cc-cccccc---CCCC-
Q 002704 222 ESIQEVIGEKIGLLNETWKSRRIEQKALDIFRIL-RGKKFVVLLDDIWQRV------------DL-TKVGVP---LPSS- 283 (890)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~------------~~-~~~~~~---l~~~- 283 (890)
.++. .... +. .......+.+.. ...+.+|+|||++... .. ..+... +...
T Consensus 199 ~~l~----~~~~-------g~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELV----QKFI-------GE-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHh----Hhhc-------cc-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 1110 11 112222233332 3467899999986320 00 011111 1111
Q ss_pred CCCCcEEEEecCCHHHHhc--c---cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCch
Q 002704 284 QTSASKVVFTTRSEEVCGL--M---EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLP 353 (890)
Q Consensus 284 ~~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (890)
...+..||.||........ . .-+..+.+.+.+.++..++|+.++.........+ ...+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 1135677777776543221 1 2345789999999999999998876543322222 345566666653
No 127
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.00 E-value=5.4e-05 Score=75.81 Aligned_cols=182 Identities=13% Similarity=0.152 Sum_probs=117.1
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEE-EEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVI-LVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++-+...+.....++...+|++|.|||+-|+.++..+. -...|.+++ -.++|......-+-..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~-~~~~~~~rvl~lnaSderGisvvr~Ki----- 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN-CEQLFPCRVLELNASDERGISVVREKI----- 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc-Cccccccchhhhcccccccccchhhhh-----
Confidence 45789999999999999888889999999999999999999887762 234555443 34455544332111111
Q ss_pred CccccccccCHHHHHHHHHHHh--cCCe-EEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCHHH-Hh-cccCC
Q 002704 234 LLNETWKSRRIEQKALDIFRIL--RGKK-FVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRSEEV-CG-LMEAH 306 (890)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~v-~~-~~~~~ 306 (890)
.+.+.+........ ..++ -.+|||+++.. +.|..+...+.+.. ..++.|+.+.+... .. .....
T Consensus 110 --------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 110 --------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-RTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred --------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-cceEEEEEcCChhhCChHHHhhH
Confidence 11111111110011 1233 47889999754 56887776665544 55666655554332 11 12234
Q ss_pred ceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchh
Q 002704 307 KKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPL 354 (890)
Q Consensus 307 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl 354 (890)
..++.++|.+++..+-++..+.......++ +..+.|++.++|--.
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDIDD---DALKLIAKISDGDLR 225 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCcHH
Confidence 578899999999999999888776655554 778889999988644
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00013 Score=84.45 Aligned_cols=193 Identities=15% Similarity=0.171 Sum_probs=111.0
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.+. ...... ....++.....+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4678999999999999887665 4568999999999999999998762 111000 0011122233333333221
Q ss_pred Cccccc---cccCHHHHHHHHHHHh-----cCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCC-HHHHhc
Q 002704 234 LLNETW---KSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRS-EEVCGL 302 (890)
Q Consensus 234 ~~~~~~---~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~~~ 302 (890)
...-.. .....++.. .+.+.+ .+++-++|+|++... .....+...+.... ....+|++|.+ ..+...
T Consensus 89 ~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-PHAIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-CCeEEEEEeCChhhhhHH
Confidence 110000 011122221 122211 245668999998533 23444444443333 45566655543 333321
Q ss_pred -ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHH
Q 002704 303 -MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITI 359 (890)
Q Consensus 303 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 359 (890)
......+.+.+++.++....+...+.......++ +.+..|++.++|.+..+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~---eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEP---GALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHH
Confidence 2234678899999999999888877554333332 67889999999988755443
No 129
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.99 E-value=4.2e-05 Score=85.18 Aligned_cols=160 Identities=17% Similarity=0.149 Sum_probs=97.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCC-ceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNF-DLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
..-+.|+|.+|+|||+|++.+++... +.+. ..++|++. .++...+...+.. ...++ +.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~-------~~~~~----f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKE-------GKLNE----FREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhc-------ccHHH----HHHH
Confidence 34699999999999999999999872 2222 24666643 4555666555432 11222 2233
Q ss_pred hcCCeEEEEEecCCCcc---cc-ccccccCCCCCCCCcEEEEecC-CHHH--------HhcccCCceeecCCCChhhHHH
Q 002704 255 LRGKKFVVLLDDIWQRV---DL-TKVGVPLPSSQTSASKVVFTTR-SEEV--------CGLMEAHKKFKVQCLSGNDAWE 321 (890)
Q Consensus 255 l~~~~~LlvlDdv~~~~---~~-~~~~~~l~~~~~~gs~iivTtR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~ 321 (890)
.+.+.-+|++||+.... .+ +.+...+......|..||+||. ...- ..++.....+.+++.+.+.-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 33345589999996321 11 1222222111113456888874 3322 2234455688999999999999
Q ss_pred HHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 322 LFRQKVGEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 322 lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
++.+.+.......+ +++...|++.+.|.--.+.
T Consensus 271 IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 271 IARKMLEIEHGELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHhcCCCCC---HHHHHHHHhccccCHHHHH
Confidence 99988765433333 3788888888887755443
No 130
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.98 E-value=4.3e-05 Score=86.07 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=95.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILR 256 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (890)
.-+.|+|.+|+|||+|++.+++... ....-..+++++. .++...+...+.. ...+. +.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~~~----~~~~~~ 210 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTS------EKFTNDFVNALRN-------NTMEE----FKEKYR 210 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHHc-------CcHHH----HHHHHh
Confidence 5689999999999999999999872 1111234555533 3344444444421 11222 223333
Q ss_pred CCeEEEEEecCCCccc----cccccccCCCCCCCCcEEEEecCCHH---------HHhcccCCceeecCCCChhhHHHHH
Q 002704 257 GKKFVVLLDDIWQRVD----LTKVGVPLPSSQTSASKVVFTTRSEE---------VCGLMEAHKKFKVQCLSGNDAWELF 323 (890)
Q Consensus 257 ~~~~LlvlDdv~~~~~----~~~~~~~l~~~~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 323 (890)
+.-+|||||+..... .+.+...+......|..||+||.... +...+.....+.+++.+.++-.+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 234889999953211 12222212111113455777776531 2334455568999999999999999
Q ss_pred HHHhcCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 324 RQKVGEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
.+.+.......++ ++...|++.+.|..-.+.
T Consensus 290 ~~~~~~~~~~l~~---e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 290 KKKAEEEGIDLPD---EVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHcCCCCCH---HHHHHHHcCcCCCHHHHH
Confidence 9988654333333 788899999998877543
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00016 Score=80.67 Aligned_cols=182 Identities=15% Similarity=0.175 Sum_probs=106.4
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCC--------------------CCCceEEEE
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSP--------------------TNFDLVILV 213 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~~wv 213 (890)
..++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.+++.+.... .+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 4678999999999999987765 5688999999999999999988762110 0111 1111
Q ss_pred EeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEE
Q 002704 214 VVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVV 291 (890)
Q Consensus 214 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~ii 291 (890)
.......++++ +.+.+.+. ..-..+++-++|+|++... .....+...+.... ....+|
T Consensus 96 ~g~~~~gid~i-r~i~~~l~------------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~-~~~~~I 155 (451)
T PRK06305 96 DGASHRGIEDI-RQINETVL------------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP-QHVKFF 155 (451)
T ss_pred eccccCCHHHH-HHHHHHHH------------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-CCceEE
Confidence 11111111111 11111110 0011256668899998533 22333444443333 455566
Q ss_pred EecC-CHHHHhc-ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchh-HHHHHH
Q 002704 292 FTTR-SEEVCGL-MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPL-ALITIG 360 (890)
Q Consensus 292 vTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~~ 360 (890)
++|. ...+... ......+++.++++++....+.+.+.......+ ++.+..|++.++|.+- |+..+-
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 6553 3333222 234567899999999999988887654332233 2678899999999765 444433
No 132
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.96 E-value=9.3e-05 Score=77.41 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=70.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcC
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRG 257 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 257 (890)
.+.++|++|+||||+|+.++.... ........-++.++. .++ ...+... +.......+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~-~~g~~~~~~~v~v~~----~~l----~~~~~g~-------~~~~~~~~~~-~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILH-RLGYVRKGHLVSVTR----DDL----VGQYIGH-------TAPKTKEILK-RA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH-HcCCcccceEEEecH----HHH----hHhhccc-------chHHHHHHHH-Hc--
Confidence 688999999999999988877652 112211112444432 122 2222111 1111112222 22
Q ss_pred CeEEEEEecCCCc-----------cccccccccCCCCCCCCcEEEEecCCHHHHhcc--------cCCceeecCCCChhh
Q 002704 258 KKFVVLLDDIWQR-----------VDLTKVGVPLPSSQTSASKVVFTTRSEEVCGLM--------EAHKKFKVQCLSGND 318 (890)
Q Consensus 258 ~~~LlvlDdv~~~-----------~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~ 318 (890)
..-+|+||++... ..+..+...+.... .+.+||+++.....-... .....+++++++.+|
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 2358899998521 11222333333333 456777776543221111 123578999999999
Q ss_pred HHHHHHHHhcC
Q 002704 319 AWELFRQKVGE 329 (890)
Q Consensus 319 ~~~lf~~~~~~ 329 (890)
..+++...+..
T Consensus 200 l~~I~~~~l~~ 210 (284)
T TIGR02880 200 LLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 133
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=3.5e-06 Score=83.20 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=42.3
Q ss_pred ccceeeecccCCCceecccCcccccCccEEEeecCCCcceEEe-cccCccccccCCcccEEEEecCCCCCCCC-------
Q 002704 700 CTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKI-DYAGEVQHFGFHSLQSFEVNFCSKLKDLT------- 771 (890)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~l~~L~~L~L~~c~~l~~l~------- 771 (890)
++..+.+..|+--+.....+...+|.+--|+++.+ ++.++.. +.. ..|++|..|.++++|....+.
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~L-----n~f~~l~dlRv~~~Pl~d~l~~~err~l 273 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDAL-----NGFPQLVDLRVSENPLSDPLRGGERRFL 273 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHH-----cCCchhheeeccCCcccccccCCcceEE
Confidence 45555554443222222223444555556666555 3333211 111 257888888888887665543
Q ss_pred cccccCCCCeEEEe
Q 002704 772 LLVLIPNLKYIAVT 785 (890)
Q Consensus 772 ~l~~l~~L~~L~L~ 785 (890)
.++.+++++.|+=+
T Consensus 274 lIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 274 LIARLTKVQVLNGS 287 (418)
T ss_pred EEeeccceEEecCc
Confidence 24567777777644
No 134
>CHL00181 cbbX CbbX; Provisional
Probab=97.95 E-value=0.00015 Score=75.80 Aligned_cols=134 Identities=10% Similarity=0.136 Sum_probs=71.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILR 256 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (890)
..+.++|++|+||||+|+.+++.... .+.-...-|+.++. .++ ...+... ..... ..+.+...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~----~~l----~~~~~g~-------~~~~~-~~~l~~a~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTR----DDL----VGQYIGH-------TAPKT-KEVLKKAM 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecH----HHH----HHHHhcc-------chHHH-HHHHHHcc
Confidence 35889999999999999999876521 11111112444441 122 2211111 11111 12222222
Q ss_pred CCeEEEEEecCCCc-----------cccccccccCCCCCCCCcEEEEecCCHHHHhcc--------cCCceeecCCCChh
Q 002704 257 GKKFVVLLDDIWQR-----------VDLTKVGVPLPSSQTSASKVVFTTRSEEVCGLM--------EAHKKFKVQCLSGN 317 (890)
Q Consensus 257 ~~~~LlvlDdv~~~-----------~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~ 317 (890)
+ -+|+||++... .....+...+.+.. .+.+||+++....+...+ .....+.+++++.+
T Consensus 123 g--gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 123 G--GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred C--CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 2 48999998532 11122223333333 456777777644332111 13457899999999
Q ss_pred hHHHHHHHHhcCC
Q 002704 318 DAWELFRQKVGEE 330 (890)
Q Consensus 318 ~~~~lf~~~~~~~ 330 (890)
|..+++...+...
T Consensus 200 el~~I~~~~l~~~ 212 (287)
T CHL00181 200 ELLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988887543
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.94 E-value=0.00015 Score=77.96 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=82.8
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.. ... ...++.+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 4578999999999999987654 566669999999999999999875 222 23344443 122221111111100
Q ss_pred CccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc--cc-cccccccCCCCCCCCcEEEEecCCHHH-Hh-cccCCce
Q 002704 234 LLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR--VD-LTKVGVPLPSSQTSASKVVFTTRSEEV-CG-LMEAHKK 308 (890)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~-~~~~~~~l~~~~~~gs~iivTtR~~~v-~~-~~~~~~~ 308 (890)
. ..+.+.+-+||+||+... .+ ...+...+.... .+.++|+||....- .. ..+....
T Consensus 94 ~------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~-~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 94 T------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS-KNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred h------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC-CCceEEEEcCChhhchHHHHhhceE
Confidence 0 001134557889999643 11 122222222223 56788888875431 11 1122346
Q ss_pred eecCCCChhhHHHHHHH
Q 002704 309 FKVQCLSGNDAWELFRQ 325 (890)
Q Consensus 309 ~~l~~L~~~~~~~lf~~ 325 (890)
+.+...+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 67777777777666554
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00022 Score=82.35 Aligned_cols=196 Identities=13% Similarity=0.113 Sum_probs=110.3
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.+.. ...+... ...+......+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c--~~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC--LNSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC--CCcCCCC----CCCCcccHHHHHHhcCCC
Confidence 3568999999999999987654 67889999999999999999988721 1111000 011112233333332221
Q ss_pred Ccc---ccccccCHHHHHHHHHHH----hcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCC-HHHHhc-
Q 002704 234 LLN---ETWKSRRIEQKALDIFRI----LRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRS-EEVCGL- 302 (890)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~~~- 302 (890)
... +.......+...+.+... ..+++-++|+|++... ..+..+...+.... ....+|++|.+ ..+...
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp-~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP-PRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC-cCeEEEEEeCChhhhhHHH
Confidence 110 000111222222222111 1245568899998643 23444544444333 34555554443 333222
Q ss_pred ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHH
Q 002704 303 MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIG 360 (890)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 360 (890)
......+.+.+++.++....+...+........+ +.+..|++.++|.+..+..+.
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~---~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEP---EALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHHHHHH
Confidence 2345678888999999888887766543322222 568899999999886554433
No 137
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=7.5e-05 Score=82.88 Aligned_cols=153 Identities=13% Similarity=0.097 Sum_probs=90.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILR 256 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (890)
.-+.|+|+.|+|||+|++.+++... .....+++++ ...+...+...+... . ...++...+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 5688999999999999999999872 1223345553 334445555544311 1 122333333
Q ss_pred CCeEEEEEecCCCccc----cccccccCCCCCCCCcEEEEecCCH---------HHHhcccCCceeecCCCChhhHHHHH
Q 002704 257 GKKFVVLLDDIWQRVD----LTKVGVPLPSSQTSASKVVFTTRSE---------EVCGLMEAHKKFKVQCLSGNDAWELF 323 (890)
Q Consensus 257 ~~~~LlvlDdv~~~~~----~~~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 323 (890)
..-+|++||+..... .+.+...+......|..||+||... .+..++.....+.+.+++.++...++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 334888899854221 1122222111111355688887542 22334445678899999999999999
Q ss_pred HHHhcCCccCCCccHHHHHHHHHhHhCCch
Q 002704 324 RQKVGEETLNCHPYILELAQTVTKECGGLP 353 (890)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (890)
.+++.......++ ++..-|++.+.|.-
T Consensus 281 ~~k~~~~~~~l~~---evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALSIRIEE---TALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcCCCCCH---HHHHHHHHhcCCCH
Confidence 9887654433332 66666777766543
No 138
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.93 E-value=5.7e-05 Score=81.74 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=56.3
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHH
Q 002704 156 TMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQE 226 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 226 (890)
.+++.+...+.+...|... +.|.++|++|+|||++|+.+++.. .....|+.+.||.+++..+..++..
T Consensus 176 d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred cccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 4678899999999888753 578889999999999999999887 3345788899999999888776654
No 139
>PRK06620 hypothetical protein; Validated
Probab=97.93 E-value=3.7e-05 Score=76.66 Aligned_cols=134 Identities=12% Similarity=0.057 Sum_probs=82.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILR 256 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (890)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. . + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~----------------------~-~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF----------------------N-E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------------------c-h-------hHH-
Confidence 669999999999999999987765 11 1111 0000 0 0 011
Q ss_pred CCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCHH-------HHhcccCCceeecCCCChhhHHHHHHHHh
Q 002704 257 GKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVFTTRSEE-------VCGLMEAHKKFKVQCLSGNDAWELFRQKV 327 (890)
Q Consensus 257 ~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 327 (890)
+..-++++||+.... .+..+...+. . .|..||+|++... +..++....++.+++++.++...++.+.+
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~--e-~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIIN--E-KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHH--h-cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 122478889995221 1111111111 2 5668999887432 33444566689999999999988888877
Q ss_pred cCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 328 GEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 328 ~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
.......+ +++.+-|++++.|.--.+.
T Consensus 161 ~~~~l~l~---~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 161 SISSVTIS---RQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HHcCCCCC---HHHHHHHHHHccCCHHHHH
Confidence 54332233 3778888888877665543
No 140
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.92 E-value=0.00011 Score=88.18 Aligned_cols=178 Identities=13% Similarity=0.141 Sum_probs=98.4
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCC--C-CCCceEEE-EEeCCCCCHHHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGS--P-TNFDLVIL-VVVSKDLRLESIQEVIGE 230 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-~~f~~~~w-v~~s~~~~~~~~~~~i~~ 230 (890)
..++||+.+++++++.|......-+.++|++|+||||+|+.+++..... . ......+| +..+. + ..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l----~a 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L----QA 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h----hc
Confidence 4578999999999999988777778899999999999999999876211 0 01122232 22111 0 00
Q ss_pred HhcCccccccccCHHHHHHHHHHHh--cCCeEEEEEecCCCcc-------ccc--cccccCCCCCCCCcEEEEecCCHHH
Q 002704 231 KIGLLNETWKSRRIEQKALDIFRIL--RGKKFVVLLDDIWQRV-------DLT--KVGVPLPSSQTSASKVVFTTRSEEV 299 (890)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-------~~~--~~~~~l~~~~~~gs~iivTtR~~~v 299 (890)
+.. .....++....+...+ .+++.+|++|++.... ..+ .+..+ ......-++|-||...+.
T Consensus 257 --g~~----~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp--~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 257 --GAS----VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP--ALARGELRTIAATTWAEY 328 (852)
T ss_pred --ccc----cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhH--HhhCCCeEEEEecCHHHH
Confidence 000 0111222222222222 2478999999984321 111 12222 112123556666655432
Q ss_pred Hh-------cccCCceeecCCCChhhHHHHHHHHhcCC----ccCCCccHHHHHHHHHhHhCCch
Q 002704 300 CG-------LMEAHKKFKVQCLSGNDAWELFRQKVGEE----TLNCHPYILELAQTVTKECGGLP 353 (890)
Q Consensus 300 ~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~----~~~~~~~l~~~~~~i~~~c~GlP 353 (890)
.. .......+.+++++.+++.+++......- ...-. .+....+++.+.+..
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~---d~al~~~~~ls~ryi 390 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLIL---DEAVVAAVELSHRYI 390 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeC---HHHHHHHHHHccccc
Confidence 11 12234689999999999999975443211 11111 255566666665443
No 141
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.1e-05 Score=57.11 Aligned_cols=33 Identities=52% Similarity=0.769 Sum_probs=15.1
Q ss_pred CCCEEeccCCCccccchHHhcCCcCCEeeccCC
Q 002704 587 SLEHLDLSTSLISEIPEELKALVNLKCLNLENT 619 (890)
Q Consensus 587 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~ 619 (890)
+|++|++++|+|+.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 344444444444444444444444444444444
No 142
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00027 Score=80.75 Aligned_cols=193 Identities=11% Similarity=0.094 Sum_probs=108.9
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|-+..++.+..++..+... .+.++|+.|+||||+|+.+++.+.. ...... ..+... ...+.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c-~~~~~~---~pC~~C----~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC-VNGPTP---MPCGEC----SSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc-ccCCCC---CCCccc----hHHHHHHcCCC
Confidence 45789999999999999876654 5889999999999999999887621 110000 000000 00111111000
Q ss_pred Ccc---ccccccCHHHHHHHH---HH-HhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCC-HHHHhc-
Q 002704 234 LLN---ETWKSRRIEQKALDI---FR-ILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRS-EEVCGL- 302 (890)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l---~~-~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~~~- 302 (890)
... +.......++..... .. -..+++-++|+|++... ..+..+...+.... ....+|++|.. ..+...
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp-~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP-PYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC-CCEEEEEecCChHHhHHHH
Confidence 000 000011222222211 11 12355668999998543 23444544444433 45566655543 444322
Q ss_pred ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHH
Q 002704 303 MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITI 359 (890)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 359 (890)
......+++.+++.++..+.+.+.+.......++ +.+..|++.++|.+..+..+
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~---eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYED---EALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHH
Confidence 2345578999999999999988877544333332 67888999999988655433
No 143
>PF14516 AAA_35: AAA-like domain
Probab=97.90 E-value=0.00068 Score=72.77 Aligned_cols=201 Identities=14% Similarity=0.142 Sum_probs=119.6
Q ss_pred CCcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-----CHHHHHH--
Q 002704 154 EPTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-----RLESIQE-- 226 (890)
Q Consensus 154 ~~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-----~~~~~~~-- 226 (890)
.+..|.|...-+++.+.+.+.+ ..+.|.|+-.+|||+|...+.+... +.. ..++++++..-. +....++
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~--~~~-~~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQ--QQG-YRCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHH--HCC-CEEEEEEeecCCCcccCCHHHHHHHH
Confidence 3455789877777887777633 6999999999999999999988872 223 345677766532 3454444
Q ss_pred --HHHHHhcCcccc---c--cccCHHHHHHHHHHHh---cCCeEEEEEecCCCcccc----ccccccC----------CC
Q 002704 227 --VIGEKIGLLNET---W--KSRRIEQKALDIFRIL---RGKKFVVLLDDIWQRVDL----TKVGVPL----------PS 282 (890)
Q Consensus 227 --~i~~~l~~~~~~---~--~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~----~~~~~~l----------~~ 282 (890)
.|.++++..... + ...+.......+.+.+ .+++.+|+||+|+..... .++...+ +.
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 444555443210 1 0112223333444432 268999999999643211 1111111 11
Q ss_pred CCCCCcEEEEec-CCHHHHhc----ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 283 SQTSASKVVFTT-RSEEVCGL----MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 283 ~~~~gs~iivTt-R~~~v~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
.. +=+-|++.+ +.....+. +.....+.|.+++.+|...|..++-..- .+ ...++|...+||+|.-+.
T Consensus 166 ~~-~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~~---~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 166 WQ-KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----SQ---EQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred cc-eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----CH---HHHHHHHHHHCCCHHHHH
Confidence 11 111122221 11111111 1234578999999999999988763221 11 348899999999999999
Q ss_pred HHHHHhccC
Q 002704 358 TIGRAMACK 366 (890)
Q Consensus 358 ~~~~~l~~~ 366 (890)
.++..+..+
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999998753
No 144
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=1.3e-06 Score=97.53 Aligned_cols=101 Identities=30% Similarity=0.418 Sum_probs=46.2
Q ss_pred ccceEEEEccccccccccC-CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEe
Q 002704 514 WEKLRRLSLMENQIENLSE-VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLD 592 (890)
Q Consensus 514 ~~~l~~L~l~~~~~~~l~~-~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~ 592 (890)
+.++..+++.+|.+..+.. +..+++|++|++++|.+....+ +..++.|+.|+++ ++.+..++. +..+++|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~-~N~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLS-GNLISDISG-LESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccccccccc---hhhccchhhheec-cCcchhccC-Cccchhhhccc
Confidence 3445555555555544444 4445555555555444432221 3344445555555 333333322 33345555555
Q ss_pred ccCCCccccchH-HhcCCcCCEeeccCC
Q 002704 593 LSTSLISEIPEE-LKALVNLKCLNLENT 619 (890)
Q Consensus 593 L~~~~i~~lp~~-l~~l~~L~~L~l~~~ 619 (890)
+++|.+..+... ...+.+|+.+++.+|
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCC
Confidence 555554444332 344455555555544
No 145
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=5.2e-05 Score=81.06 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=47.8
Q ss_pred hccCCCCcEEEeecCCCCcccCccccCccCCCEEeccCC-CccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccC
Q 002704 558 LQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTS-LISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRL 636 (890)
Q Consensus 558 ~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L 636 (890)
+..+++++.|+++ ++.++.+|. -..+|+.|.+++| +++.+|..+ ..+|++|++++|..+..+|. +|
T Consensus 48 ~~~~~~l~~L~Is-~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sL 114 (426)
T PRK15386 48 IEEARASGRLYIK-DCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SV 114 (426)
T ss_pred HHHhcCCCEEEeC-CCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------cc
Confidence 3446788888888 447777772 2335888888775 566777654 35788888887755555553 35
Q ss_pred cEeeccC
Q 002704 637 HVLRMFG 643 (890)
Q Consensus 637 ~~L~l~~ 643 (890)
++|++..
T Consensus 115 e~L~L~~ 121 (426)
T PRK15386 115 RSLEIKG 121 (426)
T ss_pred ceEEeCC
Confidence 5566543
No 146
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.87 E-value=0.00043 Score=68.39 Aligned_cols=46 Identities=26% Similarity=0.466 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHh----ccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCL----VEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++|.|.+++.|++-. ......-+.+||..|+|||++++++.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999887554 44556778899999999999999999887
No 147
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.85 E-value=8.6e-05 Score=81.55 Aligned_cols=171 Identities=19% Similarity=0.169 Sum_probs=95.7
Q ss_pred CcccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCH
Q 002704 155 PTMVGLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRL 221 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (890)
..+.|.+.+++++.+.+.- ...+.|.++|++|+|||++|+.+++.. ...|- .+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi---~V~~se---- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATFL---RVVGSE---- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCEE---EEecch----
Confidence 3467999999998887631 234578899999999999999999986 33332 121111
Q ss_pred HHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc--------c--------cccccccCCC-CC
Q 002704 222 ESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV--------D--------LTKVGVPLPS-SQ 284 (890)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--------~--------~~~~~~~l~~-~~ 284 (890)
+. .... +.........+.....+.+.+|+||+++... . +..+...+.. ..
T Consensus 253 --L~----~k~~-------Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 --LI----QKYL-------GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred --hh----hhhc-------chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 11 1110 1111112222222334578899999974210 0 0011111111 01
Q ss_pred CCCcEEEEecCCHHHHhc--c---cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCc
Q 002704 285 TSASKVVFTTRSEEVCGL--M---EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGL 352 (890)
Q Consensus 285 ~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 352 (890)
..+.+||.||...+..+. . .....+.+...+.++..++|..++.........++ ..++..+.|+
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~ 388 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDEL 388 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCC
Confidence 145678888876554322 1 23467899999999999999987655433222233 3444555544
No 148
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.84 E-value=0.00011 Score=75.71 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=106.5
Q ss_pred CCcccchHHHHHHHHHHhccCC---ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHH
Q 002704 154 EPTMVGLQSQLEEVWRCLVEEP---VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGE 230 (890)
Q Consensus 154 ~~~~~Gr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (890)
.+.|.+|+.++..+...+.+.. ...|.|+|.+|.|||.+.+++.+.. .. ..+|+++-+.++.+.++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 4567899999999999997643 2456899999999999999999876 22 3589999999999999999999
Q ss_pred HhcC-ccccccc----cCHHHHHHHHHH--Hhc--CCeEEEEEecCCCcccccccccc----CCCCCCCCcEEEEecCC-
Q 002704 231 KIGL-LNETWKS----RRIEQKALDIFR--ILR--GKKFVVLLDDIWQRVDLTKVGVP----LPSSQTSASKVVFTTRS- 296 (890)
Q Consensus 231 ~l~~-~~~~~~~----~~~~~~~~~l~~--~l~--~~~~LlvlDdv~~~~~~~~~~~~----l~~~~~~gs~iivTtR~- 296 (890)
+.+. ..+.... .+..+.+..+.+ ... ++.++||||+++.-.+.+.+..+ +.........+|+++--
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 9852 2211111 122333334443 222 45899999999755444432110 11101022233333332
Q ss_pred -HHH-HhcccCC--ceeecCCCChhhHHHHHHHH
Q 002704 297 -EEV-CGLMEAH--KKFKVQCLSGNDAWELFRQK 326 (890)
Q Consensus 297 -~~v-~~~~~~~--~~~~l~~L~~~~~~~lf~~~ 326 (890)
+.. ...+++. .++.....+.+|..+++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 222 2224443 35677888999999988654
No 149
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.82 E-value=0.00051 Score=70.24 Aligned_cols=194 Identities=14% Similarity=0.086 Sum_probs=112.0
Q ss_pred HHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHhhccCCCC---CCceEEEEEeCCCCCHHHHHHHHHHHhcCccc
Q 002704 164 LEEVWRCLVE---EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPT---NFDLVILVVVSKDLRLESIQEVIGEKIGLLNE 237 (890)
Q Consensus 164 ~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 237 (890)
++++.+.+.. ...+-+.|||.+|.|||++++.+......... .--.++.|.....++...+...|+.+++.+..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 3444444433 34567999999999999999999877621111 11157788888999999999999999998763
Q ss_pred cccccCHHHHHHHHHHHhcC-CeEEEEEecCCCc-----ccccccc---ccCCCCCCCCcEEEEecCCHHHHhcc-----
Q 002704 238 TWKSRRIEQKALDIFRILRG-KKFVVLLDDIWQR-----VDLTKVG---VPLPSSQTSASKVVFTTRSEEVCGLM----- 303 (890)
Q Consensus 238 ~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~-----~~~~~~~---~~l~~~~~~gs~iivTtR~~~v~~~~----- 303 (890)
. ..+.........+.++. +-=+||+|++.+. ....++. ..+.+.- .-+-|.+-|+..--+-..
T Consensus 126 ~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL-~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 126 P--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL-QIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred C--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc-CCCeEEeccHHHHHHhccCHHHH
Confidence 2 33444444444455543 4458899999542 1111221 1121211 344566666643222111
Q ss_pred cCCceeecCCCChh-hHHHHHHHHhcCC--ccCCCccHHHHHHHHHhHhCCchhHHHHHH
Q 002704 304 EAHKKFKVQCLSGN-DAWELFRQKVGEE--TLNCHPYILELAQTVTKECGGLPLALITIG 360 (890)
Q Consensus 304 ~~~~~~~l~~L~~~-~~~~lf~~~~~~~--~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 360 (890)
+-...+.+.....+ +...|+......- ...++-..++++..|...++|+.=-+..+-
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 12245566665554 4444443322111 112222336899999999999876554443
No 150
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00014 Score=82.12 Aligned_cols=158 Identities=19% Similarity=0.123 Sum_probs=95.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILR 256 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (890)
..+.|+|..|+|||.|++.+++.... ...-..+++++ ..++...+...+.. ...+ .+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yit------aeef~~el~~al~~-------~~~~----~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVS------SEEFTNEFINSIRD-------GKGD----SFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEee------HHHHHHHHHHHHHh-------ccHH----HHHHHhh
Confidence 45899999999999999999998621 11123455553 34455455444321 1111 2223333
Q ss_pred CCeEEEEEecCCCc---ccc-ccccccCCCCCCCCcEEEEecCCH---------HHHhcccCCceeecCCCChhhHHHHH
Q 002704 257 GKKFVVLLDDIWQR---VDL-TKVGVPLPSSQTSASKVVFTTRSE---------EVCGLMEAHKKFKVQCLSGNDAWELF 323 (890)
Q Consensus 257 ~~~~LlvlDdv~~~---~~~-~~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 323 (890)
+ -=+|||||+... ..| +.+...+......|..|||||+.. .+...+...-.+.+++.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 247888999532 112 122222221112456688888752 23455567778999999999999999
Q ss_pred HHHhcCCccCCCccHHHHHHHHHhHhCCchhHH
Q 002704 324 RQKVGEETLNCHPYILELAQTVTKECGGLPLAL 356 (890)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 356 (890)
.+++.......+ +++..-|++++.+..-.+
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCHHHH
Confidence 998866544333 377778888777665444
No 151
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=7.2e-07 Score=98.08 Aligned_cols=131 Identities=27% Similarity=0.375 Sum_probs=96.8
Q ss_pred cccccceEEEEccccccccccC-CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCc-cccCccCC
Q 002704 511 VIEWEKLRRLSLMENQIENLSE-VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPS-GISKLVSL 588 (890)
Q Consensus 511 ~~~~~~l~~L~l~~~~~~~l~~-~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L 588 (890)
...|.++...++++|.+..+.. +.-++.|+.|+|++|++.+. .++..+++|+.|||+ .+.+..+|. +...++ |
T Consensus 160 s~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDls-yN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLS-YNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred chhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccc-cchhccccccchhhhh-h
Confidence 3456778888888888765543 45568899999999888654 248889999999999 666777775 223444 9
Q ss_pred CEEeccCCCccccchHHhcCCcCCEeeccCCCCccccChhhhcCCccCcEeeccCCCcC
Q 002704 589 EHLDLSTSLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYF 647 (890)
Q Consensus 589 ~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 647 (890)
+.|.+++|.++.| .++.+|.+|+.||+++|-..+.---..+..|..|+.|++.+|++.
T Consensus 235 ~~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999988888 468899999999999984322111112566788999999988764
No 152
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00029 Score=81.20 Aligned_cols=195 Identities=13% Similarity=0.136 Sum_probs=107.3
Q ss_pred CcccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.+..++..+... .+.++|+.|+||||+|+.+++.+.. ....+ ...++.....+.|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCC-------CCCCCccHHHHHHhcCCC
Confidence 46789999999999999887664 5689999999999999999887621 11100 000011111111111000
Q ss_pred Cccccc---cccCHHHHHHHHHHHh-----cCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHHhc
Q 002704 234 LLNETW---KSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVF-TTRSEEVCGL 302 (890)
Q Consensus 234 ~~~~~~---~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~~ 302 (890)
...-.. .....++. +.+.+.+ .+++-++|+|++... .....+...+.... ....+|+ ||....+...
T Consensus 88 ~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp-~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 88 VDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP-PHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCC-CCeEEEEEeCChhhhhHH
Confidence 000000 00111111 1122211 244557889998543 22344444443333 4455554 5555555432
Q ss_pred -ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchh-HHHHHHHH
Q 002704 303 -MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPL-ALITIGRA 362 (890)
Q Consensus 303 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~~~~ 362 (890)
.+....+.+.+++.++....+...+.......++ +....|++.++|..- |+..+-.+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~---~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISD---AALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3345678899999999988888766544332232 677889999998764 44444333
No 153
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=3.1e-05 Score=54.84 Aligned_cols=41 Identities=39% Similarity=0.548 Sum_probs=34.2
Q ss_pred CCCcEEEeecCCCCcccCccccCccCCCEEeccCCCccccch
Q 002704 562 PSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTSLISEIPE 603 (890)
Q Consensus 562 ~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 603 (890)
++|++|+++ ++.++.+|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~-~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLS-NNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEET-SSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEcc-CCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 478999999 77888999889999999999999999987764
No 154
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.77 E-value=0.00014 Score=79.38 Aligned_cols=172 Identities=16% Similarity=0.159 Sum_probs=96.6
Q ss_pred CcccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCH
Q 002704 155 PTMVGLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRL 221 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (890)
..+.|.+..+++|.+.+.- ...+.|.++|++|+|||++|+.+++.. ...|- .+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi---~i~~------ 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATFI---RVVG------ 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCEE---EEeh------
Confidence 3567999988888876631 245789999999999999999999876 33332 1211
Q ss_pred HHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc------------c----cccccccCCC-CC
Q 002704 222 ESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV------------D----LTKVGVPLPS-SQ 284 (890)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------------~----~~~~~~~l~~-~~ 284 (890)
..+ ..... +.........+.......+.+|+||+++... . +..+...+.. ..
T Consensus 213 s~l----~~k~~-------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 SEF----VQKYL-------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HHH----HHHhc-------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 111 11110 1111112222222334678999999975310 0 1111111111 11
Q ss_pred CCCcEEEEecCCHHHHhc--c---cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCch
Q 002704 285 TSASKVVFTTRSEEVCGL--M---EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLP 353 (890)
Q Consensus 285 ~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (890)
..+..||.||...+..+. . .-+..+.+...+.++..++|...........+.+ ..++++.+.|.-
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 145678888876544221 1 2345788999999998888887765433222223 345556666654
No 155
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.75 E-value=0.00033 Score=78.12 Aligned_cols=161 Identities=18% Similarity=0.239 Sum_probs=89.0
Q ss_pred cccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhccCCC---CCCceEEEEEeCCCC
Q 002704 156 TMVGLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSP---TNFDLVILVVVSKDL 219 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~ 219 (890)
.+.|.+.+++++.+.+.- ...+-+.++|++|+|||++|+.+++... .. ..+....++.+...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~-~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA-QRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc-cccccccCCceeEEeccch-
Confidence 466899999998887631 2346799999999999999999999872 11 01223444444332
Q ss_pred CHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHh-cCCeEEEEEecCCCcc---------cc-----ccccccCCCCC
Q 002704 220 RLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRIL-RGKKFVVLLDDIWQRV---------DL-----TKVGVPLPSSQ 284 (890)
Q Consensus 220 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~---------~~-----~~~~~~l~~~~ 284 (890)
++ +...... ............+... .+++.+|+||+++... +. ..+...+....
T Consensus 261 ---eL----l~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 261 ---EL----LNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred ---hh----cccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 11 1110000 0001111122222221 3578999999996321 11 12222222111
Q ss_pred C-CCcEEEEecCCHHHHh--cc---cCCceeecCCCChhhHHHHHHHHhcC
Q 002704 285 T-SASKVVFTTRSEEVCG--LM---EAHKKFKVQCLSGNDAWELFRQKVGE 329 (890)
Q Consensus 285 ~-~gs~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~lf~~~~~~ 329 (890)
. .+..||.||...+..+ .. .-+..|.++..+.++..++|..+...
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1 3445566665544322 11 23457899999999999999988643
No 156
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.75 E-value=0.00012 Score=87.40 Aligned_cols=155 Identities=18% Similarity=0.216 Sum_probs=89.4
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCC--CC-CceEEEEEeCCCCCHHHHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSP--TN-FDLVILVVVSKDLRLESIQEVIGEK 231 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~-f~~~~wv~~s~~~~~~~~~~~i~~~ 231 (890)
..++||+.+++++++.|......-+.++|++|+|||++|+.+++...... .. ....+|. + +...+ ...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----LAG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----hhh
Confidence 35789999999999999876667788999999999999999998762111 11 1233332 1 11111 110
Q ss_pred hcCccccccccCHHHHHHHHHHHh-cCCeEEEEEecCCCcc----------ccccc-cccCCCCCCCCcEEEEecCCHHH
Q 002704 232 IGLLNETWKSRRIEQKALDIFRIL-RGKKFVVLLDDIWQRV----------DLTKV-GVPLPSSQTSASKVVFTTRSEEV 299 (890)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~----------~~~~~-~~~l~~~~~~gs~iivTtR~~~v 299 (890)
.. -....++....+.+.+ ..++.+|++|++..-. +...+ ...+.. ..-++|-+|...+.
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~---g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS---GKLRCIGSTTYEEY 323 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC---CCeEEEEecCHHHH
Confidence 00 0112334444444444 3468899999985211 11112 222221 12345544443222
Q ss_pred H-------hcccCCceeecCCCChhhHHHHHHHHh
Q 002704 300 C-------GLMEAHKKFKVQCLSGNDAWELFRQKV 327 (890)
Q Consensus 300 ~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 327 (890)
. ........+.+++++.++..+++....
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 111233578999999999999998654
No 157
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00072 Score=77.59 Aligned_cols=190 Identities=13% Similarity=0.117 Sum_probs=106.3
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
..++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.+++.+. ....-+ ...++.....+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 4678999999999999987654 4577899999999999999987752 111000 001111112222221110
Q ss_pred Cccccc---cccCHHHHHHHHHHH-----hcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEE-ecCCHHHHhc
Q 002704 234 LLNETW---KSRRIEQKALDIFRI-----LRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVF-TTRSEEVCGL 302 (890)
Q Consensus 234 ~~~~~~---~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~~ 302 (890)
...... .....++.. .+... ..++.-++|+|++... ..+..+...+.... ....+|+ ||....+...
T Consensus 88 ~dv~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp-~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP-AHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCeEEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC-CCeEEEEEeCChhhCcHH
Confidence 000000 011122111 12221 2355668899998643 23444444443333 3444554 4444443322
Q ss_pred -ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 303 -MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 303 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
.+....+.+.+++.++..+.+...+.......++ +....|++.++|.+..+.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~---~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYED---EALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 2344678899999999999988877544332232 667888899998876443
No 158
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=7.4e-05 Score=79.91 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=58.6
Q ss_pred ccceEEEEccccccccccCCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEec
Q 002704 514 WEKLRRLSLMENQIENLSEVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDL 593 (890)
Q Consensus 514 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L 593 (890)
+.++++|++++|.+..+|.++ ++|+.|.+++|.....+|.. + .++|++|++++|..+..+|++ |+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceEEe
Confidence 467788999988887777443 36999999987777677754 2 358999999976678888864 566666
Q ss_pred cCCC---ccccchHHh
Q 002704 594 STSL---ISEIPEELK 606 (890)
Q Consensus 594 ~~~~---i~~lp~~l~ 606 (890)
+++. +..+|.++.
T Consensus 120 ~~n~~~~L~~LPssLk 135 (426)
T PRK15386 120 KGSATDSIKNVPNGLT 135 (426)
T ss_pred CCCCCcccccCcchHh
Confidence 6653 556776543
No 159
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=1.4e-05 Score=79.10 Aligned_cols=203 Identities=20% Similarity=0.152 Sum_probs=106.0
Q ss_pred EEEccccccccccC----CCCCCcceEEEeccCCCcccc-ChhhhccCCCCcEEEeecCCCC----cccCccccCccCCC
Q 002704 519 RLSLMENQIENLSE----VPTCPHLLTLFLNNDGLLRII-NSDFLQSMPSLKVLNLSRYMGL----LELPSGISKLVSLE 589 (890)
Q Consensus 519 ~L~l~~~~~~~l~~----~~~~~~Lr~L~L~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~i----~~lp~~i~~L~~L~ 589 (890)
.+.+.++.+..... -..+++++.|+|.+|.+.+-. -..++.+||+|++|+|+ |+.+ +.+| -.+.+|+
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~I~~lp---~p~~nl~ 124 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSDIKSLP---LPLKNLR 124 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCccccCc---ccccceE
Confidence 34444555544322 245788899999888765311 12346789999999999 5543 3444 3567889
Q ss_pred EEeccCCCcc--ccchHHhcCCcCCEeeccCCCCcc-ccChhhhcCC-ccCcEeeccCCCcCccCCCCCCccccCCCccc
Q 002704 590 HLDLSTSLIS--EIPEELKALVNLKCLNLENTGLLL-KIPLQLISHF-SRLHVLRMFGNGYFSCGLYPEDSVLFGGGELL 665 (890)
Q Consensus 590 ~L~L~~~~i~--~lp~~l~~l~~L~~L~l~~~~~~~-~~p~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 665 (890)
.|-|.++.+. ..-..+..++.++.|.++.|+.-. .+..+-+... +.+++|+...|....|. .
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~--------------~ 190 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL--------------N 190 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH--------------H
Confidence 9999888554 555567778888888877763111 1111112222 24566666555443221 1
Q ss_pred HHHhcC-CCCCceEEEEecChhhhHhhhhhcccccccceeeecccCCCceecccCcccccCccEEEeecCCCcceE
Q 002704 666 VEELLG-LKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVEL 740 (890)
Q Consensus 666 ~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 740 (890)
...+++ .+++..+-+..+...+...-..+ ...+.+..|.+....-.....+..+..++.|..|.+++++-...+
T Consensus 191 ~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s-e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 191 KNKLSRIFPNVNSVFVCEGPLKTESSEKGS-EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHhHHhhcccchheeeecCcccchhhcccC-CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 112222 35555555544433222211111 111122233333322222223334667888888888887655443
No 160
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.68 E-value=4e-05 Score=80.36 Aligned_cols=289 Identities=18% Similarity=0.183 Sum_probs=172.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCC-ceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNF-DLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFR 253 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (890)
..+.+.++|.|||||||++-.+.. . ...| +.+.++...+-.+...+.-.....++... .+.+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 457899999999999999999988 4 3445 45666777777677777777777777643 233445556667
Q ss_pred HhcCCeEEEEEecCCCccc-cccccccCCCCCCCCcEEEEecCCHHHHhcccCCceeecCCCChh-hHHHHHHHHhcCCc
Q 002704 254 ILRGKKFVVLLDDIWQRVD-LTKVGVPLPSSQTSASKVVFTTRSEEVCGLMEAHKKFKVQCLSGN-DAWELFRQKVGEET 331 (890)
Q Consensus 254 ~l~~~~~LlvlDdv~~~~~-~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~ 331 (890)
...++|.++|+||-.+..+ -......+..+. ..-.|+.|+|.... ........+.+|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~-~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGAC-PRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccc-hhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 7889999999999743211 111111222222 44567888887532 234556778888865 78888877653221
Q ss_pred --cCCCccHHHHHHHHHhHhCCchhHHHHHHHHhccCCChhHHHHHH-HH---HhcccCCCC-CCCcchhchHHhhccCC
Q 002704 332 --LNCHPYILELAQTVTKECGGLPLALITIGRAMACKKTPEEWSYAI-QV---LRTSSSQFP-GLGNEVYPLLKFSYDNL 404 (890)
Q Consensus 332 --~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~-~~---l~~~~~~~~-~~~~~~~~~l~~sy~~L 404 (890)
..-...-.....+|.++..|.|++|...+...+.- ...+-...+ +. +... .... --.......+..||.-|
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lL 237 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALL 237 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhh
Confidence 10111113678899999999999999888877652 222211111 11 1111 0000 00134677888999999
Q ss_pred CCchhhhHHhhhccCCCCccccHHHHHHHHhhCCCccCccccchhhhHHHHHHHHHHhccccccC---CCcEEehHHHHH
Q 002704 405 PNDTIRSCLLYCCLYPEDCCISKENLVDCWIGEGLLNGSVTLGSHEQGYHIVGILVQACLLEEVD---EDEVKMHDVIRD 481 (890)
Q Consensus 405 ~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~---~~~~~mHdlv~~ 481 (890)
..- .+--|.-++.|...|.-. ...|.+.|-... ...-.....+..+++.+++...+ ...|+.-+-++.
T Consensus 238 tgw-e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~ 308 (414)
T COG3903 238 TGW-ERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRR 308 (414)
T ss_pred hhH-HHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHH
Confidence 874 778888888887776544 234444442210 11222333355667777665432 234455555555
Q ss_pred HHHHHH
Q 002704 482 MALWLA 487 (890)
Q Consensus 482 ~~~~~~ 487 (890)
++..+-
T Consensus 309 YalaeL 314 (414)
T COG3903 309 YALAEL 314 (414)
T ss_pred HHHHHH
Confidence 554443
No 161
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.66 E-value=9.5e-06 Score=93.42 Aligned_cols=112 Identities=31% Similarity=0.276 Sum_probs=49.7
Q ss_pred CCCCcEEEeecCCCCcc--cCccccCccCCCEEeccCC--Ccccc----chHHhcCCcCCEeeccCCCCccccCh-hhhc
Q 002704 561 MPSLKVLNLSRYMGLLE--LPSGISKLVSLEHLDLSTS--LISEI----PEELKALVNLKCLNLENTGLLLKIPL-QLIS 631 (890)
Q Consensus 561 l~~L~~L~L~~~~~i~~--lp~~i~~L~~L~~L~L~~~--~i~~l----p~~l~~l~~L~~L~l~~~~~~~~~p~-~~i~ 631 (890)
++.|+.|.+.++..+.. +-.....+++|+.|+++++ .+... +.....+++|+.|+++++..+...-- .+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555554444443 2233344555555555542 11111 11233445666666666543222211 1112
Q ss_pred CCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCCCceEEEEecCh
Q 002704 632 HFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKHLEVLSLTLGSS 685 (890)
Q Consensus 632 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 685 (890)
.+++|++|.+..|...+ +.....-...+++|+.|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt-------------~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLT-------------DEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccc-------------hhHHHHHHHhcCcccEEeeecCcc
Confidence 35566666655554211 222333334455666666665543
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.63 E-value=0.00032 Score=84.82 Aligned_cols=155 Identities=16% Similarity=0.227 Sum_probs=88.5
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCC---CceEEEEEeCCCCCHHHHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTN---FDLVILVVVSKDLRLESIQEVIGEK 231 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~~~ 231 (890)
..++||+++++++++.|......-+.++|++|+|||++|+.++.......-. -...+|. + +...+ ..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l----~a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL----LA- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH----hc-
Confidence 3578999999999999987666677899999999999999998876211111 1234442 1 11111 11
Q ss_pred hcCccccccccCHHHHHHHHHHHh-cCCeEEEEEecCCCcc---------ccccccccCCCCCCCCcEEEEecCCHHHHh
Q 002704 232 IGLLNETWKSRRIEQKALDIFRIL-RGKKFVVLLDDIWQRV---------DLTKVGVPLPSSQTSASKVVFTTRSEEVCG 301 (890)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~---------~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 301 (890)
+.. -....++....+.+.+ ..++.+|++|++..-. +...+..+... . ..-++|.+|...+...
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-r-g~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-R-GELQCIGATTLDEYRK 321 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-C-CCcEEEEeCCHHHHHH
Confidence 100 1112333444443333 3568999999984211 11112211111 1 2345665555544321
Q ss_pred -------cccCCceeecCCCChhhHHHHHHHH
Q 002704 302 -------LMEAHKKFKVQCLSGNDAWELFRQK 326 (890)
Q Consensus 302 -------~~~~~~~~~l~~L~~~~~~~lf~~~ 326 (890)
.......+.++..+.++...++...
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1123356788888999988887653
No 163
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.60 E-value=0.00075 Score=74.09 Aligned_cols=136 Identities=19% Similarity=0.123 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccc
Q 002704 160 LQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETW 239 (890)
Q Consensus 160 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 239 (890)
+..-..++.+.+..... ++.|.|+-++||||+++.+.... ... .+++..-+......-+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l~------------- 81 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIELL------------- 81 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhHH-------------
Confidence 33445555555554444 99999999999999998777765 222 45554333221111001
Q ss_pred cccCHHHHHHHHHHHhcCCeEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHHhc------ccCCceeecCC
Q 002704 240 KSRRIEQKALDIFRILRGKKFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVCGL------MEAHKKFKVQC 313 (890)
Q Consensus 240 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~ 313 (890)
+....+...-..++..++||.|....+|+.....+.+.. +. +|++|+-+...... .|....+.+.|
T Consensus 82 ------d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~-~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P 153 (398)
T COG1373 82 ------DLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRG-NL-DVLITGSSSSLLSKEISESLAGRGKDLELYP 153 (398)
T ss_pred ------HHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccc-cc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence 111111111112788999999999999998877776655 44 89998888765221 23456789999
Q ss_pred CChhhHHHHH
Q 002704 314 LSGNDAWELF 323 (890)
Q Consensus 314 L~~~~~~~lf 323 (890)
|+..|...+-
T Consensus 154 lSF~Efl~~~ 163 (398)
T COG1373 154 LSFREFLKLK 163 (398)
T ss_pred CCHHHHHhhc
Confidence 9999987654
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.56 E-value=0.00038 Score=84.10 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=41.2
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++||+.+++++++.|......-+.++|++|+||||+|+.++...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999988776778899999999999999999876
No 165
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0023 Score=65.96 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=113.6
Q ss_pred cccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHH
Q 002704 156 TMVGLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLE 222 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (890)
.+=|-++++++|.+.++- +..+-|.+||++|.|||-||++|+++. ...| +.+...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----
Confidence 345789999999888742 467889999999999999999999986 3333 333222
Q ss_pred HHHHHHHHHhcCccccccccCHHHHHHHHHHHhc-CCeEEEEEecCCCc-------------c---ccccccccCCCC-C
Q 002704 223 SIQEVIGEKIGLLNETWKSRRIEQKALDIFRILR-GKKFVVLLDDIWQR-------------V---DLTKVGVPLPSS-Q 284 (890)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~-------------~---~~~~~~~~l~~~-~ 284 (890)
++.+..-+ ....+...+++..+ ..+.+|++|.++.- + ..-++...+..- .
T Consensus 220 ----ElVqKYiG--------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ----ELVQKYIG--------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ----HHHHHHhc--------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 22222111 12345555666554 46889999998531 0 011222222111 1
Q ss_pred CCCcEEEEecCCHHHHh-----cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCch----hH
Q 002704 285 TSASKVVFTTRSEEVCG-----LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLP----LA 355 (890)
Q Consensus 285 ~~gs~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP----la 355 (890)
...-|||..|...++.+ --.-+..|++..-+.+.-.++|+-+........+-+++ .+++.|.|.- .|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHH
Confidence 14578998887665532 12245677887666666677787777665544444444 4455555543 34
Q ss_pred HHHHHHHhc--cCC---ChhHHHHHHHHH
Q 002704 356 LITIGRAMA--CKK---TPEEWSYAIQVL 379 (890)
Q Consensus 356 i~~~~~~l~--~~~---~~~~w~~~~~~l 379 (890)
+.+=|++++ ..+ +.+++..+.+..
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 555555543 222 455555555444
No 166
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0022 Score=68.28 Aligned_cols=94 Identities=12% Similarity=0.145 Sum_probs=59.3
Q ss_pred CeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCHH-HH-hcccCCceeecCCCChhhHHHHHHHHhcCCccC
Q 002704 258 KKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRSEE-VC-GLMEAHKKFKVQCLSGNDAWELFRQKVGEETLN 333 (890)
Q Consensus 258 ~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 333 (890)
++-++|+|++... .....+...+.... .++.+|+||.+.. +. ...+....+.+.+++.+++.+.+.+.....
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPS-GDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCC-CCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 3445567998643 23344444443433 5667777777653 32 223345679999999999999998764211
Q ss_pred CCccHHHHHHHHHhHhCCchhHHHHH
Q 002704 334 CHPYILELAQTVTKECGGLPLALITI 359 (890)
Q Consensus 334 ~~~~l~~~~~~i~~~c~GlPlai~~~ 359 (890)
. .+.+..++..++|.|..+..+
T Consensus 182 -~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 245667889999999865544
No 167
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.54 E-value=0.0055 Score=73.85 Aligned_cols=46 Identities=30% Similarity=0.330 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCLVE------EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++|.+..++.|.+++.. ...+++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999887631 234589999999999999999999987
No 168
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.53 E-value=1.7e-05 Score=69.40 Aligned_cols=109 Identities=19% Similarity=0.342 Sum_probs=86.7
Q ss_pred eEEEEcccccccccc----CCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEe
Q 002704 517 LRRLSLMENQIENLS----EVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLD 592 (890)
Q Consensus 517 l~~L~l~~~~~~~l~----~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~ 592 (890)
+..++++++.+..++ .+....+|...+|++|.+ +.+|+.|-..++.++.|+|+ ++.+..+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~-~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLA-NNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcc-hhhhhhchHHHhhhHHhhhcc
Confidence 334555555543322 256778888999996654 67888877778899999999 888999999999999999999
Q ss_pred ccCCCccccchHHhcCCcCCEeeccCCCCccccChh
Q 002704 593 LSTSLISEIPEELKALVNLKCLNLENTGLLLKIPLQ 628 (890)
Q Consensus 593 L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~ 628 (890)
++.|.+...|..+..|.+|-+|+..+|. ...+|..
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 9999999999988889999999998885 5667655
No 169
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.53 E-value=0.0024 Score=72.95 Aligned_cols=172 Identities=15% Similarity=0.117 Sum_probs=93.7
Q ss_pred CcccchHHHHHHHHHHhc---c---------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHH
Q 002704 155 PTMVGLQSQLEEVWRCLV---E---------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLE 222 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (890)
..++|.+..++++.+++. . ...+-+.++|++|+|||++|+.+++.. ...| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----H
Confidence 356788777666655442 1 234568999999999999999999876 2222 22221 1
Q ss_pred HHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc----c--------cc----cccccCCCC-CC
Q 002704 223 SIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV----D--------LT----KVGVPLPSS-QT 285 (890)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~--------~~----~~~~~l~~~-~~ 285 (890)
++.. .. ...........+.......+.+|+|||++.-. . +. .+...+... ..
T Consensus 123 ~~~~----~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVE----MF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHH----HH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111 11 11112223333333445677899999985311 0 00 111111111 11
Q ss_pred CCcEEEEecCCHHHHh-----cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCch
Q 002704 286 SASKVVFTTRSEEVCG-----LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLP 353 (890)
Q Consensus 286 ~gs~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (890)
.+..||.||......+ ...-+..+.+...+.++-.++|..++.......+ .....+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCC
Confidence 3445666776543211 1124467889999999999999887654332211 22447777887743
No 170
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00055 Score=73.52 Aligned_cols=149 Identities=16% Similarity=0.161 Sum_probs=91.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCc--eEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFD--LVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIF 252 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 252 (890)
....+.|||..|.|||.|++++.+.. ..... .++++ +.+.....++..+.. .....++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~------~se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL------TSEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec------cHHHHHHHHHHHHHh-----------hhHHHHH
Confidence 36789999999999999999999987 33333 33433 233444444443321 1222333
Q ss_pred HHhcCCeEEEEEecCCCccc----cccccccCCCCCCCCcEEEEecCCH---------HHHhcccCCceeecCCCChhhH
Q 002704 253 RILRGKKFVVLLDDIWQRVD----LTKVGVPLPSSQTSASKVVFTTRSE---------EVCGLMEAHKKFKVQCLSGNDA 319 (890)
Q Consensus 253 ~~l~~~~~LlvlDdv~~~~~----~~~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~ 319 (890)
+.. .-=++++||++-... .+++...|......|..||+|++.. .+..++...-.+.+.+.+.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 333 223888999864211 2223222322222455899999653 3455667778999999999999
Q ss_pred HHHHHHHhcCCccCCCccHHHHHHHHHhH
Q 002704 320 WELFRQKVGEETLNCHPYILELAQTVTKE 348 (890)
Q Consensus 320 ~~lf~~~~~~~~~~~~~~l~~~~~~i~~~ 348 (890)
..++.+++.......++ ++..-|++.
T Consensus 250 ~aiL~kka~~~~~~i~~---ev~~~la~~ 275 (408)
T COG0593 250 LAILRKKAEDRGIEIPD---EVLEFLAKR 275 (408)
T ss_pred HHHHHHHHHhcCCCCCH---HHHHHHHHH
Confidence 99999987666554444 444444443
No 171
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00097 Score=72.95 Aligned_cols=152 Identities=18% Similarity=0.173 Sum_probs=86.2
Q ss_pred cccchHHHHHHHHHHhcc------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHH
Q 002704 156 TMVGLQSQLEEVWRCLVE------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLES 223 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 223 (890)
.+=|.++.+.++.+.+.. ...+-|.++|++|.|||.||+++++.. .-.| +.++-.
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeecch-----
Confidence 455889888888877632 345789999999999999999999987 3233 233222
Q ss_pred HHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc---cc----------cccc---cccCCCC--CC
Q 002704 224 IQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR---VD----------LTKV---GVPLPSS--QT 285 (890)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~~----------~~~~---~~~l~~~--~~ 285 (890)
+|+..+ .+.+++...+.+.+.-..-++++++||++.. .+ ..++ +.-+... .|
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 222222 2233344444444555678999999998631 01 1111 1111111 11
Q ss_pred CCcEEEE-ecCCHHHH---hccc-CCceeecCCCChhhHHHHHHHHhcCC
Q 002704 286 SASKVVF-TTRSEEVC---GLME-AHKKFKVQCLSGNDAWELFRQKVGEE 330 (890)
Q Consensus 286 ~gs~iiv-TtR~~~v~---~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~ 330 (890)
.+--||= |+|-..+- ...+ -++.|.+.--+...-.+++...+..-
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l 377 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGL 377 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC
Confidence 2322332 55544331 1222 34577777777776667776665443
No 172
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=8e-05 Score=86.80 Aligned_cols=130 Identities=21% Similarity=0.229 Sum_probs=87.7
Q ss_pred cceEEEEccccccc--ccc-C-CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCE
Q 002704 515 EKLRRLSLMENQIE--NLS-E-VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEH 590 (890)
Q Consensus 515 ~~l~~L~l~~~~~~--~l~-~-~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~ 590 (890)
.++++|++++...- ..+ . ...+|.|++|.+.+-.+...--...+.++++|+.||+| ++.++.+ .++++|+||+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS-~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDIS-GTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecC-CCCccCc-HHHhccccHHH
Confidence 46777777664321 111 1 24578999999986444322222336788999999999 8888888 78999999999
Q ss_pred EeccCCCccccc--hHHhcCCcCCEeeccCCCCcccc--Chh---hhcCCccCcEeeccCCCc
Q 002704 591 LDLSTSLISEIP--EELKALVNLKCLNLENTGLLLKI--PLQ---LISHFSRLHVLRMFGNGY 646 (890)
Q Consensus 591 L~L~~~~i~~lp--~~l~~l~~L~~L~l~~~~~~~~~--p~~---~i~~l~~L~~L~l~~~~~ 646 (890)
|.+++=.+..-+ ..+.+|++|+.||+|........ ... .-..|++|+.|+.+++..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 999887776433 36778999999999876432221 110 123588899999887655
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.49 E-value=0.00045 Score=83.89 Aligned_cols=155 Identities=14% Similarity=0.208 Sum_probs=87.9
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCC----CceEEEEEeCCCCCHHHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTN----FDLVILVVVSKDLRLESIQEVIGE 230 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~ 230 (890)
..++||+.+++++++.|......-+.++|++|+|||++|+.++.+... ... ....+|.- +...+. .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l-----~~~~l~----a 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLAL-----DMGALI----A 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEe-----eHHHHh----h
Confidence 357899999999999998766677779999999999999999887621 110 12223321 111111 0
Q ss_pred HhcCccccccccCHHHHHHHHHHHhc--CCeEEEEEecCCCcc---------ccccccccCCCCCCCCcEEEEecCCHHH
Q 002704 231 KIGLLNETWKSRRIEQKALDIFRILR--GKKFVVLLDDIWQRV---------DLTKVGVPLPSSQTSASKVVFTTRSEEV 299 (890)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~---------~~~~~~~~l~~~~~~gs~iivTtR~~~v 299 (890)
+.. -....+.....+...+. +++.+|++|++..-. +...+..+... . ..-++|-+|.....
T Consensus 243 --~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~-g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 243 --GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-R-GELHCIGATTLDEY 314 (852)
T ss_pred --cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-c-CceEEEEeCcHHHH
Confidence 000 01123333333333332 468999999985321 11112222211 1 22455555554433
Q ss_pred Hh-------cccCCceeecCCCChhhHHHHHHHHh
Q 002704 300 CG-------LMEAHKKFKVQCLSGNDAWELFRQKV 327 (890)
Q Consensus 300 ~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~ 327 (890)
-. .......+.+...+.++..+++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 11 11233567889899999999887653
No 174
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0033 Score=66.63 Aligned_cols=195 Identities=17% Similarity=0.155 Sum_probs=107.4
Q ss_pred cccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCC------------CCCceEEEEEeCCCCCHH
Q 002704 156 TMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSP------------TNFDLVILVVVSKDLRLE 222 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------~~f~~~~wv~~s~~~~~~ 222 (890)
.++|.+..++.+...+..++. ....++|+.|+||+++|..+++.+.... ..++-..|+.-.....-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 578999999999999988775 7899999999999999998877652111 112223343211000000
Q ss_pred HHHHHHHHHhcCccccccccCHHHHHHHHHHHh-----cCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecC
Q 002704 223 SIQEVIGEKIGLLNETWKSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTR 295 (890)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR 295 (890)
.+-..-++..+..........+++ ++.+.+.+ .+++-++|+|++... .....+...+.... +. .+|++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~-~fILi~~ 161 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NG-TLILIAP 161 (314)
T ss_pred ccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CC-eEEEEEC
Confidence 000111111110000001111222 22333333 345668899998543 22333333333322 33 4555544
Q ss_pred C-HHHHh-cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHH
Q 002704 296 S-EEVCG-LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITI 359 (890)
Q Consensus 296 ~-~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 359 (890)
+ ..+.. ..+....+++.+++.++..+.+.+....... ......++..++|.|..+...
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~------~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL------NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc------hhHHHHHHHHcCCCHHHHHHH
Confidence 4 43332 2345678999999999999999987532211 112357889999999765443
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00054 Score=80.76 Aligned_cols=155 Identities=20% Similarity=0.264 Sum_probs=89.3
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCC---CceEEEEEeCCCCCHHHHHHHHHHHh
Q 002704 156 TMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTN---FDLVILVVVSKDLRLESIQEVIGEKI 232 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~~~l 232 (890)
.++||+++++++++.|......-+.++|++|+|||++|+.++......... .++.+|.. +... +..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----lla-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LLA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hhc--
Confidence 578999999999999987655667789999999999999998775211111 23444421 1111 110
Q ss_pred cCccccccccCHHHHHHHHHHHh-cCCeEEEEEecCCCc----------cccccccccCCCCCCCCcEEEEecCCHHHHh
Q 002704 233 GLLNETWKSRRIEQKALDIFRIL-RGKKFVVLLDDIWQR----------VDLTKVGVPLPSSQTSASKVVFTTRSEEVCG 301 (890)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~----------~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 301 (890)
+.. -....+.....+...+ +.++.+|++|++... .+...+..++... ..-+||-+|...+...
T Consensus 256 G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSN 329 (758)
T ss_pred ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHH
Confidence 000 0112333333343333 346789999998521 1111122222221 2345555555443211
Q ss_pred -------cccCCceeecCCCChhhHHHHHHHHh
Q 002704 302 -------LMEAHKKFKVQCLSGNDAWELFRQKV 327 (890)
Q Consensus 302 -------~~~~~~~~~l~~L~~~~~~~lf~~~~ 327 (890)
.......+.+++.+.+++.+++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11233578999999999999988654
No 176
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.48 E-value=0.007 Score=59.74 Aligned_cols=183 Identities=17% Similarity=0.217 Sum_probs=104.8
Q ss_pred cCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEE-eCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHH
Q 002704 173 EEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVV-VSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDI 251 (890)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 251 (890)
.++.+++.++|.-|.|||.+++.+..... -+.++-+. -.+..+...+...|...+............+.....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~-----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLN-----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcC-----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 35668999999999999999996655541 11122233 3344577888888888887632111111233333444
Q ss_pred HHHh-cCCe-EEEEEecCCCc--ccccccccc--C-CCCCCCCcEEEEecCC--------HHHHhcccCCc-eeecCCCC
Q 002704 252 FRIL-RGKK-FVVLLDDIWQR--VDLTKVGVP--L-PSSQTSASKVVFTTRS--------EEVCGLMEAHK-KFKVQCLS 315 (890)
Q Consensus 252 ~~~l-~~~~-~LlvlDdv~~~--~~~~~~~~~--l-~~~~~~gs~iivTtR~--------~~v~~~~~~~~-~~~l~~L~ 315 (890)
.... +++| ..+++||..+. ..++.++.. + .+.. ..-+|++.-.. ......-.... .|.+.|++
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~-~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSS-KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhccccc-CceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 4444 4566 89999998532 222222111 1 1111 11223332221 11111111122 38999999
Q ss_pred hhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHH
Q 002704 316 GNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGR 361 (890)
Q Consensus 316 ~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~ 361 (890)
.++...++..+......+.+---.+....|.....|.|.+|..++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999999988876543221111246778899999999999977664
No 177
>PRK10536 hypothetical protein; Provisional
Probab=97.47 E-value=0.00062 Score=68.18 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=36.0
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 156 TMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.+.++......++.++.+. .+|.+.|++|+|||+||.+++.+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567888888888888764 499999999999999999988753
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=6.6e-05 Score=87.47 Aligned_cols=139 Identities=20% Similarity=0.146 Sum_probs=92.3
Q ss_pred CCcceEEEeccCCCc-cccChhhhccCCCCcEEEeecCCCCc--ccCccccCccCCCEEeccCCCccccchHHhcCCcCC
Q 002704 536 CPHLLTLFLNNDGLL-RIINSDFLQSMPSLKVLNLSRYMGLL--ELPSGISKLVSLEHLDLSTSLISEIPEELKALVNLK 612 (890)
Q Consensus 536 ~~~Lr~L~L~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~i~--~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~~l~~L~ 612 (890)
-.+|+.|++++.... ...|...-..||+|+.|.++ +..+. ++-.-..+++||..||+++|+++.+ .++++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~-~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVIS-GRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEec-CceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 358999999875433 34445544568999999999 54332 2334456889999999999999988 7899999999
Q ss_pred EeeccCCCCccccChhhhcCCccCcEeeccCCCcCccCCCCCCccccCCCcccHHHhcCCCCCceEEEEecCh
Q 002704 613 CLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKHLEVLSLTLGSS 685 (890)
Q Consensus 613 ~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 685 (890)
.|.+.+-.+.....-.-+.+|++|+.|+++......... .-...++.-..||+|+.|+.++...
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~---------ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK---------IIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchH---------HHHHHHHhcccCccccEEecCCcch
Confidence 999887543221111125689999999998765532100 0001122223478999999886544
No 179
>PRK08116 hypothetical protein; Validated
Probab=97.45 E-value=0.00015 Score=75.12 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=58.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILR 256 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (890)
..+.++|.+|+|||.||.++++.+. .....+++++ ..+++..|....... ...+..+ +.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~~~~----~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSS----GKEDENE----IIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhcc----ccccHHH----HHHHhc
Confidence 4689999999999999999999873 2233456664 445666665544321 1112222 233344
Q ss_pred CCeEEEEEecCC--Ccccccc--ccccCCCCCCCCcEEEEecCCH
Q 002704 257 GKKFVVLLDDIW--QRVDLTK--VGVPLPSSQTSASKVVFTTRSE 297 (890)
Q Consensus 257 ~~~~LlvlDdv~--~~~~~~~--~~~~l~~~~~~gs~iivTtR~~ 297 (890)
+-. ||||||+. ...+|.. +...+......+..+|+||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444 89999994 2233432 2222221112456688888753
No 180
>CHL00176 ftsH cell division protein; Validated
Probab=97.44 E-value=0.0016 Score=75.54 Aligned_cols=171 Identities=15% Similarity=0.162 Sum_probs=95.9
Q ss_pred CcccchHHHHHHHHHH---hcc---------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHH
Q 002704 155 PTMVGLQSQLEEVWRC---LVE---------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLE 222 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~---L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (890)
..+.|.++..+++.+. +.. ...+-|.++|++|+|||++|+.+++.. ... ++.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccH----H
Confidence 3467877766665544 332 124569999999999999999999875 222 222221 1
Q ss_pred HHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc------------c----cccccccCCCC-CC
Q 002704 223 SIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV------------D----LTKVGVPLPSS-QT 285 (890)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------------~----~~~~~~~l~~~-~~ 285 (890)
++.. .. ...........+.....+.+.+|+|||++... . +..+...+... ..
T Consensus 251 ~f~~----~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVE----MF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHH----Hh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 1111 00 01111222333444456788999999995320 1 11121111111 11
Q ss_pred CCcEEEEecCCHHHHhc--c---cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCc
Q 002704 286 SASKVVFTTRSEEVCGL--M---EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGL 352 (890)
Q Consensus 286 ~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 352 (890)
.+..||.||...+..+. . .-+..+.++..+.++-.++++.++...... + ......+++.+.|.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~--~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS--P--DVSLELIARRTPGF 387 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc--h--hHHHHHHHhcCCCC
Confidence 45567777766543221 1 234678899999999999999887653211 1 13456777888773
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.42 E-value=0.00053 Score=63.76 Aligned_cols=88 Identities=22% Similarity=0.096 Sum_probs=49.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILR 256 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (890)
..+.|+|++|+||||+++.++... ......++++..+........... ........ ...........+.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHHHHHHH
Confidence 578999999999999999999887 222234555555444332222211 00011000 12223333334444444
Q ss_pred CC-eEEEEEecCCCcc
Q 002704 257 GK-KFVVLLDDIWQRV 271 (890)
Q Consensus 257 ~~-~~LlvlDdv~~~~ 271 (890)
.. ..+|++|++....
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 43 4899999997543
No 182
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.40 E-value=0.00058 Score=78.34 Aligned_cols=46 Identities=24% Similarity=0.357 Sum_probs=38.9
Q ss_pred CcccchHHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCLVE-----EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++|-++.++++..|+.. ...+++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999865 234579999999999999999998765
No 183
>PRK08181 transposase; Validated
Probab=97.37 E-value=0.0047 Score=63.58 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=57.2
Q ss_pred HHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHH
Q 002704 169 RCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKA 248 (890)
Q Consensus 169 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 248 (890)
+|+.. ..-+.++|++|+|||.||..+.+... .....++|++ ..++...+..... ..+.+...
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~l 162 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLESAI 162 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHHHH
Confidence 45543 34699999999999999999998762 2233455553 3455555543321 12222222
Q ss_pred HHHHHHhcCCeEEEEEecCCCc--ccc--ccccccCCCCCCCCcEEEEecCCH
Q 002704 249 LDIFRILRGKKFVVLLDDIWQR--VDL--TKVGVPLPSSQTSASKVVFTTRSE 297 (890)
Q Consensus 249 ~~l~~~l~~~~~LlvlDdv~~~--~~~--~~~~~~l~~~~~~gs~iivTtR~~ 297 (890)
. .+ .+.=||||||+... ..+ ..+...+.... .+..+||||...
T Consensus 163 ~----~l-~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~-~~~s~IiTSN~~ 209 (269)
T PRK08181 163 A----KL-DKFDLLILDDLAYVTKDQAETSVLFELISARY-ERRSILITANQP 209 (269)
T ss_pred H----HH-hcCCEEEEeccccccCCHHHHHHHHHHHHHHH-hCCCEEEEcCCC
Confidence 2 22 23349999998432 111 11222222212 123588888754
No 184
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0022 Score=72.08 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=91.7
Q ss_pred CcccchHHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVE------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVI 228 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 228 (890)
..-+|.++-.++|++.|.- -.-+++.+||++|||||+|++.+++.. .+.|-. +++..-.+..+|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~RkfvR---~sLGGvrDEAEI---- 392 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFVR---ISLGGVRDEAEI---- 392 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEEE---EecCccccHHHh----
Confidence 3457999999999999831 234799999999999999999999987 444432 334444443333
Q ss_pred HHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc---------ccccccccc-----CC-----CCCCCCcE
Q 002704 229 GEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR---------VDLTKVGVP-----LP-----SSQTSASK 289 (890)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------~~~~~~~~~-----l~-----~~~~~gs~ 289 (890)
.++..+-.+.-....++.+ ...+.++-+++||.++.. ..+-++..| |. -.. -=|+
T Consensus 393 ----RGHRRTYIGamPGrIiQ~m-kka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~ 466 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGM-KKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSK 466 (782)
T ss_pred ----ccccccccccCChHHHHHH-HHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCcc-chhh
Confidence 1111111112222222222 223567889999998531 111111111 10 001 1233
Q ss_pred E-EEecCCH-H-H-HhcccCCceeecCCCChhhHHHHHHHHh
Q 002704 290 V-VFTTRSE-E-V-CGLMEAHKKFKVQCLSGNDAWELFRQKV 327 (890)
Q Consensus 290 i-ivTtR~~-~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 327 (890)
| .|||-|. + + +..++...+|++.+.+++|=.++-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4 3454442 2 2 3344566899999999999888877765
No 185
>PRK12377 putative replication protein; Provisional
Probab=97.35 E-value=0.00042 Score=70.31 Aligned_cols=74 Identities=26% Similarity=0.283 Sum_probs=46.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
....+.++|.+|+|||+||.++++... .....++++++ .++...|...... ...... +.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~~----~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN------GQSGEK----FLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc------cchHHH----HHHH
Confidence 346899999999999999999999883 23334566644 3455555443321 111222 2222
Q ss_pred hcCCeEEEEEecCC
Q 002704 255 LRGKKFVVLLDDIW 268 (890)
Q Consensus 255 l~~~~~LlvlDdv~ 268 (890)
+ .+--||||||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 3 355699999994
No 186
>PRK08118 topology modulation protein; Reviewed
Probab=97.35 E-value=0.00012 Score=70.01 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=29.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEE
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVIL 212 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 212 (890)
+.|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987322356777776
No 187
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.0055 Score=64.67 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCCCCce-----EEEEEeCCCCCHHHHHHHHHHHhcC
Q 002704 161 QSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDL-----VILVVVSKDLRLESIQEVIGEKIGL 234 (890)
Q Consensus 161 ~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-----~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (890)
+...+++...+..++.. .+.++|+.|+||+++|..+++.+.- .....+ .-|+.....+|+..+. ..
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~ 81 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAAAQRTRQLIAAGTHPDLQLVS-------FI 81 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHhcCCCCCEEEEe-------cC
Confidence 34566777777776655 5889999999999999998876521 110000 0000000000000000 00
Q ss_pred ccccc----cccCHHHHHHHHHHHh-----cCCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCH-HHH-h
Q 002704 235 LNETW----KSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVFTTRSE-EVC-G 301 (890)
Q Consensus 235 ~~~~~----~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~-~ 301 (890)
+.... ....+++. ..+.+.+ .+++-++|+|++.... .-..+...+..-. .++.+|++|.+. .+. .
T Consensus 82 p~~~~~k~~~~I~idqI-R~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 82 PNRTGDKLRTEIVIEQV-REISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS-PGRYLWLISAQPARLPAT 159 (319)
T ss_pred CCcccccccccccHHHH-HHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC-CCCeEEEEECChhhCchH
Confidence 00000 00112221 2222222 2456689999986432 2223333333333 566677766653 333 2
Q ss_pred cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHH
Q 002704 302 LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIG 360 (890)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 360 (890)
..+....+.+.+++.+++.+.+... +. + +..+..++..++|.|+....+.
T Consensus 160 IrSRCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 160 IRSRCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HHhhheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 2334568899999999999888753 11 1 1346778999999998765443
No 188
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.35 E-value=0.0068 Score=64.96 Aligned_cols=198 Identities=16% Similarity=0.211 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHhccCCceEEEEEcCCCChHHHHH-HHHHhhccCCCCCCceEEEEEeCCCC---CHHHHHHHHHHHhcCc
Q 002704 160 LQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLL-THINNKFLGSPTNFDLVILVVVSKDL---RLESIQEVIGEKIGLL 235 (890)
Q Consensus 160 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~~---~~~~~~~~i~~~l~~~ 235 (890)
|.+.+++|..||.+..-..|.|.|+-|.||+.|+ .++.++. + .+..+.+.+-. +-..+...++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r---~----~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR---K----NVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC---C----CEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999988899999999999999999 7776553 1 15666655432 3445556666665431
Q ss_pred -----------------------cccccccCHHHHHHHH-------HH-------------------Hh---cCCeEEEE
Q 002704 236 -----------------------NETWKSRRIEQKALDI-------FR-------------------IL---RGKKFVVL 263 (890)
Q Consensus 236 -----------------------~~~~~~~~~~~~~~~l-------~~-------------------~l---~~~~~Llv 263 (890)
...+......++...+ ++ +| ..++-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1111111112222111 11 01 12367999
Q ss_pred EecCCCc-----------cccccccccCCCCCCCCcEEEEecCCHHHHh----cc--cCCceeecCCCChhhHHHHHHHH
Q 002704 264 LDDIWQR-----------VDLTKVGVPLPSSQTSASKVVFTTRSEEVCG----LM--EAHKKFKVQCLSGNDAWELFRQK 326 (890)
Q Consensus 264 lDdv~~~-----------~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~----~~--~~~~~~~l~~L~~~~~~~lf~~~ 326 (890)
+|+.-.. .+|... +-.. +-..||++|-+..... .+ ...+.+.|...+++-|.++...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---Lv~~--nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---LVQN--NIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---HHhc--CccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9998432 234332 2111 4567888887765433 23 24467889999999999999998
Q ss_pred hcCCccC------------CC-----ccHHHHHHHHHhHhCCchhHHHHHHHHhccCCCh
Q 002704 327 VGEETLN------------CH-----PYILELAQTVTKECGGLPLALITIGRAMACKKTP 369 (890)
Q Consensus 327 ~~~~~~~------------~~-----~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~ 369 (890)
....... .+ .....-....++..||=-.-+..+++.++...++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 7653110 00 1123445567788888888888888888776544
No 189
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.33 E-value=0.0062 Score=72.64 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=86.1
Q ss_pred CCcccchHHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHH
Q 002704 154 EPTMVGLQSQLEEVWRCLVE------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEV 227 (890)
Q Consensus 154 ~~~~~Gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 227 (890)
+...+|.++.++.|++++.. ....++.++|++|+||||+|+.++... ...|-. ++.+...+..++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~---i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYVR---MALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEE---EEcCCCCCHHHhccc
Confidence 34568999999999988852 345689999999999999999999876 333322 333333333222111
Q ss_pred HHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCccc------cccccccCC---------------CCCCC
Q 002704 228 IGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRVD------LTKVGVPLP---------------SSQTS 286 (890)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------~~~~~~~l~---------------~~~~~ 286 (890)
-... .+.........+.. .....-+++||+++.... ...+...+. -.- .
T Consensus 395 ~~~~--------~g~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl-s 464 (784)
T PRK10787 395 RRTY--------IGSMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL-S 464 (784)
T ss_pred hhcc--------CCCCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccC-C
Confidence 1111 11111222333322 222344788999853211 011111111 111 2
Q ss_pred CcEEEEecCCHHHH-hcccCCceeecCCCChhhHHHHHHHHh
Q 002704 287 ASKVVFTTRSEEVC-GLMEAHKKFKVQCLSGNDAWELFRQKV 327 (890)
Q Consensus 287 gs~iivTtR~~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 327 (890)
...+|.||....+. ...+....+.+.+++.++-.++.+++.
T Consensus 465 ~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 465 DVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 33444555443321 112234578899999999888887765
No 190
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0071 Score=65.22 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=95.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHH-
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFR- 253 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~- 253 (890)
+...+.+.|++|+|||+||.+++.. ..|+.+--++. +++ .+.++......+..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSp------e~m---------------iG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISP------EDM---------------IGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeCh------HHc---------------cCccHHHHHHHHHHH
Confidence 4567888999999999999999865 46765544321 111 22333333333333
Q ss_pred ---HhcCCeEEEEEecCCCccccccccccC------------CCCCCCCcEEEE--ecCCHHHHhccc----CCceeecC
Q 002704 254 ---ILRGKKFVVLLDDIWQRVDLTKVGVPL------------PSSQTSASKVVF--TTRSEEVCGLME----AHKKFKVQ 312 (890)
Q Consensus 254 ---~l~~~~~LlvlDdv~~~~~~~~~~~~l------------~~~~~~gs~iiv--TtR~~~v~~~~~----~~~~~~l~ 312 (890)
.-+..=-.||+||+....+|-.++..+ .....+|.|.+| ||....+...|+ -...|+++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 334556789999997666776665432 223335555544 777778877776 23578899
Q ss_pred CCCh-hhHHHHHHHHh-cCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHh
Q 002704 313 CLSG-NDAWELFRQKV-GEETLNCHPYILELAQTVTKECGGLPLALITIGRAM 363 (890)
Q Consensus 313 ~L~~-~~~~~lf~~~~-~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l 363 (890)
.++. ++..+.++..- +. +.+.+.++++...+| +-..|+-+-.++
T Consensus 671 nl~~~~~~~~vl~~~n~fs-----d~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNIFS-----DDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred ccCchHHHHHHHHHccCCC-----cchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 9987 77777776643 22 233446677777766 333444444444
No 191
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.23 E-value=0.0018 Score=68.63 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=63.7
Q ss_pred HHHHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCce-EEEEEeCCCC-CHHHHHHHHHHHhcCccccc-
Q 002704 164 LEEVWRCLVE-EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDL-VILVVVSKDL-RLESIQEVIGEKIGLLNETW- 239 (890)
Q Consensus 164 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~- 239 (890)
..++++.+.. +.-..+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+.. .+.++.+.+...+.......
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3447777754 3445779999999999999999988762 223343 4676666554 68888888887665432100
Q ss_pred --cccCHHHHHHHHHHHh--cCCeEEEEEecC
Q 002704 240 --KSRRIEQKALDIFRIL--RGKKFVVLLDDI 267 (890)
Q Consensus 240 --~~~~~~~~~~~l~~~l--~~~~~LlvlDdv 267 (890)
...........+.+++ .+++++||+|++
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 0001111111222222 589999999998
No 192
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.007 Score=64.94 Aligned_cols=162 Identities=7% Similarity=0.031 Sum_probs=85.3
Q ss_pred cccc-hHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 156 TMVG-LQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 156 ~~~G-r~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
.++| -+..++.+...+..++.. .+.++|+.|+||||+|+.+.+.... ....... ....-...+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC-------CCCcCHHHHHHhcCCC
Confidence 3456 677778888888776654 5689999999999999999877521 1100000 0000001111100000
Q ss_pred Cc----cccccccCHHHHHHHHHHH----hcCCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCCHH-HHh-
Q 002704 234 LL----NETWKSRRIEQKALDIFRI----LRGKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVFTTRSEE-VCG- 301 (890)
Q Consensus 234 ~~----~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~- 301 (890)
.. .........++..+.+... ..+.+=++|+|++.... ....+...+.... .++.+|++|.+.. +..
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp-~~~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS-GGTTAILLTENKHQILPT 156 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC-CCceEEEEeCChHhCcHH
Confidence 00 0000111122222221111 22455578999985432 2334444444434 5677777776543 322
Q ss_pred cccCCceeecCCCChhhHHHHHHHH
Q 002704 302 LMEAHKKFKVQCLSGNDAWELFRQK 326 (890)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~lf~~~ 326 (890)
..+....+++.+++.++..+.+...
T Consensus 157 IrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 157 ILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHhhceeeeCCCCCHHHHHHHHHHc
Confidence 2235678999999999998888653
No 193
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.20 E-value=0.00093 Score=66.70 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=30.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEe
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVV 215 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 215 (890)
-.++|+|..|.||||++..+.... ...|.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 368899999999999999998877 678888877754
No 194
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.013 Score=61.93 Aligned_cols=177 Identities=10% Similarity=0.043 Sum_probs=95.8
Q ss_pred HHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCcc----
Q 002704 162 SQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLN---- 236 (890)
Q Consensus 162 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---- 236 (890)
...+.+...+..+.. ..+.+.|+.|+||+++|+.++....- ..... ...+..-...+.+...-....
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC-~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC-QTPQG-------DQPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC-CCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEc
Confidence 345667777766654 56779999999999999999876621 11000 000111111111111000000
Q ss_pred c-cccccCHHHHHHHHHHHh-----cCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCH-HHH-hcccCC
Q 002704 237 E-TWKSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRSE-EVC-GLMEAH 306 (890)
Q Consensus 237 ~-~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~-~~~~~~ 306 (890)
+ ......+++..+ +.+.+ .+++=++|+|+++.. .....+...+.... .+..+|++|.+. .+. ...+..
T Consensus 81 p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp-~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 81 PIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR-PNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred cccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC-CCeEEEEEECChHhCchHHHhhc
Confidence 0 001112222222 22222 355668889998643 23334444443433 566677777664 333 223346
Q ss_pred ceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHH
Q 002704 307 KKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLAL 356 (890)
Q Consensus 307 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 356 (890)
..+.+.+++.++..+.+....... + ..+...++.++|.|..+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~~~-----~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSSAE-----I---SEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhccC-----h---HHHHHHHHHcCCCHHHH
Confidence 789999999999999988764221 1 23566788999999744
No 195
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.004 Score=69.33 Aligned_cols=164 Identities=20% Similarity=0.192 Sum_probs=89.8
Q ss_pred cccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHH
Q 002704 156 TMVGLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLE 222 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (890)
.+=|.|+-+.+|.+.+.- ...+-|..+|++|.|||++|+.+++.. +..|- .+...
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFl-----svkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNFL-----SVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCee-----eccCH----
Confidence 343466666666555421 456889999999999999999999976 44442 22211
Q ss_pred HHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc-------------ccccccccCCCCCCCCcE
Q 002704 223 SIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV-------------DLTKVGVPLPSSQTSASK 289 (890)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~~~~~gs~ 289 (890)
++ ... +.+.++..+.+.+++.-+--+.+|+||+++... .+..+...+.... ....
T Consensus 503 EL----~sk-------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e-~~k~ 570 (693)
T KOG0730|consen 503 EL----FSK-------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE-ALKN 570 (693)
T ss_pred HH----HHH-------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc-ccCc
Confidence 11 111 122233333333333334567899999885321 0111222222222 2222
Q ss_pred E-EE--ecCCHHH-Hhccc---CCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHH
Q 002704 290 V-VF--TTRSEEV-CGLME---AHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQ 343 (890)
Q Consensus 290 i-iv--TtR~~~v-~~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~ 343 (890)
| |+ |-|...+ ...+. .+..+.+++-+.+.-.++|+.++........-+++++++
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 3 33 3343333 22233 456777887778888899999987766544445555543
No 196
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.17 E-value=0.00058 Score=64.36 Aligned_cols=101 Identities=29% Similarity=0.430 Sum_probs=61.5
Q ss_pred ceEEEEccccccccccCCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCc--cccCccCCCEEec
Q 002704 516 KLRRLSLMENQIENLSEVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPS--GISKLVSLEHLDL 593 (890)
Q Consensus 516 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~--~i~~L~~L~~L~L 593 (890)
....+++++|.+..++.++.++.|.+|.+.+|.++..-| ..-.-+++|..|.|. ++++..+-. -+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~Lt-nNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILT-NNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeecc-chhhhccccceEEec-CcchhhhhhcchhccCCccceeee
Confidence 345667777777777777777777777777666654333 323345667777777 555544321 2445667777777
Q ss_pred cCCCccccch----HHhcCCcCCEeeccC
Q 002704 594 STSLISEIPE----ELKALVNLKCLNLEN 618 (890)
Q Consensus 594 ~~~~i~~lp~----~l~~l~~L~~L~l~~ 618 (890)
-+|.++..+. .+.++++|+.||+.+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 7776654432 345566666666554
No 197
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.16 E-value=0.0089 Score=67.05 Aligned_cols=202 Identities=15% Similarity=0.083 Sum_probs=122.0
Q ss_pred CcccchHHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHhhccC--CC---CCCceEEEEEeCCCCCHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVE-----EPVGIVGLYGMGGVGKTTLLTHINNKFLG--SP---TNFDLVILVVVSKDLRLESI 224 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~---~~f~~~~wv~~s~~~~~~~~ 224 (890)
..+-+||.+..+|-.++.. +....+.|.|-+|+|||..+..|.+.+.. .+ ..|+ .+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 3456899999999988843 33458999999999999999999885521 11 2444 345555555679999
Q ss_pred HHHHHHHhcCccccccccCHHHHHHHHHHHhc-----CCeEEEEEecCCCccc--cccccccCCCCCCCCcEEEEecCC-
Q 002704 225 QEVIGEKIGLLNETWKSRRIEQKALDIFRILR-----GKKFVVLLDDIWQRVD--LTKVGVPLPSSQTSASKVVFTTRS- 296 (890)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~~~--~~~~~~~l~~~~~~gs~iivTtR~- 296 (890)
...|..++..... ........+..+.. .+..+|++|+++.... .+-+...|....-++||++|-+=.
T Consensus 475 Y~~I~~~lsg~~~-----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 475 YEKIWEALSGERV-----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHhcccCcc-----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 9999999987542 23333344444432 4678889998743211 111111121111256776654322
Q ss_pred -HHH---------HhcccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHh
Q 002704 297 -EEV---------CGLMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAM 363 (890)
Q Consensus 297 -~~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l 363 (890)
.+. +..+ ....+.+.|.++++-.++...+..+...-.+...+=++++|+.-.|-.-.|+...-++.
T Consensus 550 TmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 111 1221 23467788899998888888776554332333344456666666666666655554443
No 198
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.15 E-value=0.0007 Score=62.13 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHhhc
Q 002704 179 VGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~ 200 (890)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999987
No 199
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.14 E-value=0.008 Score=63.87 Aligned_cols=37 Identities=30% Similarity=0.301 Sum_probs=28.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEe
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVV 215 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 215 (890)
...+.++|..|+|||+||..+++... ..-..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH
Confidence 37799999999999999999999873 22235666643
No 200
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.14 E-value=0.00014 Score=83.79 Aligned_cols=113 Identities=22% Similarity=0.207 Sum_probs=65.8
Q ss_pred CCCcceEEEeccCCCccccC-hhhhccCCCCcEEEeecC-CCCccc----CccccCccCCCEEeccCCC-ccc--cchHH
Q 002704 535 TCPHLLTLFLNNDGLLRIIN-SDFLQSMPSLKVLNLSRY-MGLLEL----PSGISKLVSLEHLDLSTSL-ISE--IPEEL 605 (890)
Q Consensus 535 ~~~~Lr~L~L~~~~~~~~~~-~~~~~~l~~L~~L~L~~~-~~i~~l----p~~i~~L~~L~~L~L~~~~-i~~--lp~~l 605 (890)
.++.|+.|.+.++....... ..+...+++|+.|+++++ ..+... +.....+.+|+.|+++++. ++. +....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36677777777654443321 233566788888888742 222211 1233456778888888875 552 22223
Q ss_pred hcCCcCCEeeccCCCCcc-ccChhhhcCCccCcEeeccCCCcC
Q 002704 606 KALVNLKCLNLENTGLLL-KIPLQLISHFSRLHVLRMFGNGYF 647 (890)
Q Consensus 606 ~~l~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~ 647 (890)
..+++|++|.+.+|..+. .--..+...+++|++|++++|...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 347788888877775322 111223466778888888877654
No 201
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.14 E-value=0.0033 Score=59.71 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=71.8
Q ss_pred chHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhccCCCC-----------------CCceEEEEEeCCC--
Q 002704 159 GLQSQLEEVWRCLVEEPVG-IVGLYGMGGVGKTTLLTHINNKFLGSPT-----------------NFDLVILVVVSKD-- 218 (890)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~f~~~~wv~~s~~-- 218 (890)
|-+...+.+...+..+... .+.++|+.|+||+|+|..+++.+..... ...-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5567777888888777665 5899999999999999998876531111 1112233322221
Q ss_pred -CCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecC
Q 002704 219 -LRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTR 295 (890)
Q Consensus 219 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR 295 (890)
..++++. .+...+.... ..+++=++|+||++.. .....+...+.... .++++|++|+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp-~~~~fiL~t~ 140 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPP-ENTYFILITN 140 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT-TTEEEEEEES
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCC-CCEEEEEEEC
Confidence 1222222 2222222111 1245668899998653 33444444444444 6788888888
Q ss_pred CHH-H-HhcccCCceeecCCCC
Q 002704 296 SEE-V-CGLMEAHKKFKVQCLS 315 (890)
Q Consensus 296 ~~~-v-~~~~~~~~~~~l~~L~ 315 (890)
+.. + ....+....+.+.+++
T Consensus 141 ~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE----
T ss_pred ChHHChHHHHhhceEEecCCCC
Confidence 764 2 2222344566666653
No 202
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.12 E-value=0.001 Score=63.88 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=67.1
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGL 234 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (890)
..+||-++.++.+.-...+++.+-+.|.||+|+||||-+..+++.+. ....-+.+.-.+.|+...++.+-..|-.-...
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~ 105 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGIDVVRNKIKMFAQK 105 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccccccHHHHHHHHHHHHh
Confidence 35789999999998888899999999999999999999998888772 22234455556666665554444333221110
Q ss_pred ccccccccCHHHHHHHHHHHh-cCCeEEEEEecCCCc
Q 002704 235 LNETWKSRRIEQKALDIFRIL-RGKKFVVLLDDIWQR 270 (890)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~ 270 (890)
.. .+ .++.-+||||+.++.
T Consensus 106 kv-----------------~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 106 KV-----------------TLPPGRHKIIILDEADSM 125 (333)
T ss_pred hc-----------------cCCCCceeEEEeeccchh
Confidence 00 11 255668899998764
No 203
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.11 E-value=0.0029 Score=64.45 Aligned_cols=170 Identities=18% Similarity=0.189 Sum_probs=100.4
Q ss_pred cccchHHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHH-HHHHHHHH
Q 002704 156 TMVGLQSQLEEVWRCLVE----EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLE-SIQEVIGE 230 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~ 230 (890)
.++|-.++..++-+++.. ++..-|.|+|+.|.|||+|...+..+. +..-+..+-|........+ -.++.|..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 467999999999988854 566788999999999999998887774 3333444555555544332 24556666
Q ss_pred HhcCcccc--ccccCHHHHHHHHHHHhc------CCeEEEEEecCCCccc------cccccccCCCCCCCCcEEEEecCC
Q 002704 231 KIGLLNET--WKSRRIEQKALDIFRILR------GKKFVVLLDDIWQRVD------LTKVGVPLPSSQTSASKVVFTTRS 296 (890)
Q Consensus 231 ~l~~~~~~--~~~~~~~~~~~~l~~~l~------~~~~LlvlDdv~~~~~------~~~~~~~l~~~~~~gs~iivTtR~ 296 (890)
++...... ....+..+....+...|+ +-+++.|+|+++--.. +..+...-.....+-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 55432211 123344455555555553 2468888888742110 011111111112245667789997
Q ss_pred HHH-------HhcccCCceeecCCCChhhHHHHHHHHhc
Q 002704 297 EEV-------CGLMEAHKKFKVQCLSGNDAWELFRQKVG 328 (890)
Q Consensus 297 ~~v-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 328 (890)
... -..+....++-++.++-++..++++....
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 532 23333334566777888888888877653
No 204
>PRK07261 topology modulation protein; Provisional
Probab=97.07 E-value=0.0021 Score=61.75 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=41.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcC
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRG 257 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 257 (890)
.|.|+|++|+||||||+.+.....-..-+.|...|-... ...+.++....+...+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW-----------------------QERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc-----------------------ccCCHHHHHHHHHHHHhC
Confidence 589999999999999999987651111244555552111 122344555555666666
Q ss_pred CeEEEEEecCC
Q 002704 258 KKFVVLLDDIW 268 (890)
Q Consensus 258 ~~~LlvlDdv~ 268 (890)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 55 6778864
No 205
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.07 E-value=0.003 Score=75.85 Aligned_cols=173 Identities=16% Similarity=0.150 Sum_probs=93.4
Q ss_pred cccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHH
Q 002704 156 TMVGLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLE 222 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (890)
.+.|.+..++++.+.+.- ...+.|.++|++|+||||+|+.+++.. ...| +.++.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 467999999888877631 234678999999999999999999876 2222 222211
Q ss_pred HHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc-------------ccccccccCCCCCCCCcE
Q 002704 223 SIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV-------------DLTKVGVPLPSSQTSASK 289 (890)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~~~~~gs~ 289 (890)
++. ... .....+.....+.....+.+.+|+|||+.... ....+...+......+..
T Consensus 247 ~i~----~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EIM----SKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HHh----ccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 111 000 11112222223333345667899999985321 011122222211113334
Q ss_pred EEE-ecCCHHHH-hcc----cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhH
Q 002704 290 VVF-TTRSEEVC-GLM----EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLA 355 (890)
Q Consensus 290 iiv-TtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPla 355 (890)
++| ||....-. ..+ .-...+.+...+.++-.+++...........+ .....+++.+.|.--+
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCHH
Confidence 444 55443211 111 12356778888888888888865543322111 2356677888886543
No 206
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.032 Score=58.92 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=94.3
Q ss_pred HHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcC------
Q 002704 162 SQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGL------ 234 (890)
Q Consensus 162 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~------ 234 (890)
...+++...+..++. ..+.+.|+.|+||+++|+.++....-. ..-+ .....-..-+.+...-..
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~-~~~~--------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQ-NYQS--------EACGFCHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCC-CCCC--------CCCCCCHHHHHHHcCCCCCEEEEe
Confidence 345666677766654 478899999999999999987765211 1000 000000111111100000
Q ss_pred ccccccccCHHHHHHHHHHHh-----cCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCH-HHH-hcccC
Q 002704 235 LNETWKSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRSE-EVC-GLMEA 305 (890)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~-~~~~~ 305 (890)
+........+++.. .+.+.+ .+++=++|+|++... .....+...+.... .++.+|++|.+. .+. ...+.
T Consensus 81 p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 81 PEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPA-PNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred cCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCC-CCeEEEEEECChhhChHHHHhc
Confidence 00000011222222 222222 234558888998643 23334444443333 556666666654 343 33345
Q ss_pred CceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHH
Q 002704 306 HKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITI 359 (890)
Q Consensus 306 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 359 (890)
...+.+.+++.+++.+.+..... +.+..+++.++|.|+.+..+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~-----------~~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQGI-----------TVPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHcCC-----------chHHHHHHHcCCCHHHHHHH
Confidence 67889999999999998865311 12356788999999976554
No 207
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.03 E-value=0.0048 Score=69.14 Aligned_cols=173 Identities=13% Similarity=0.036 Sum_probs=91.0
Q ss_pred CcccchHHHHHHHHHHh---c----c---CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHH
Q 002704 155 PTMVGLQSQLEEVWRCL---V----E---EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESI 224 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L---~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 224 (890)
..+.|.+..++.+.+.. . . ...+-|.++|++|+|||.+|+.+++.. ...|- -+..+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~~---~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPLL---RLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEEhH------Hh
Confidence 34667776666555422 1 1 235679999999999999999999987 22321 12111 11
Q ss_pred HHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc----cc----------ccccccCCCCCCCCcEE
Q 002704 225 QEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV----DL----------TKVGVPLPSSQTSASKV 290 (890)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~~----------~~~~~~l~~~~~~gs~i 290 (890)
.... .+.+...+.+.+...-...+++|++|+++... .. ..+...+.... .+.-|
T Consensus 296 ----~~~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~-~~V~v 363 (489)
T CHL00195 296 ----FGGI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKK-SPVFV 363 (489)
T ss_pred ----cccc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCC-CceEE
Confidence 1100 11112222222222224578999999985311 00 00111111112 34445
Q ss_pred EEecCCHHHH-----hcccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCch
Q 002704 291 VFTTRSEEVC-----GLMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLP 353 (890)
Q Consensus 291 ivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (890)
|.||.+.... ....-+..+.++.-+.++-.++|..+.......... ..-...+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 6677655421 111345678888889999999998887553211111 012345666666654
No 208
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.02 E-value=0.00074 Score=63.67 Aligned_cols=81 Identities=26% Similarity=0.370 Sum_probs=38.7
Q ss_pred CCcEEEeecCCCCcccCccccCccCCCEEeccCCCccccchHHh-cCCcCCEeeccCCCCccccCh-hhhcCCccCcEee
Q 002704 563 SLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTSLISEIPEELK-ALVNLKCLNLENTGLLLKIPL-QLISHFSRLHVLR 640 (890)
Q Consensus 563 ~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~l~-~l~~L~~L~l~~~~~~~~~p~-~~i~~l~~L~~L~ 640 (890)
+.-.+||+ ++.+..++. +..++.|.+|.+++|+|+.+-+.+. .+++|..|.+.+|+ +.++.. .-+..|++|++|.
T Consensus 43 ~~d~iDLt-dNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLT-DNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceeccc-ccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 44456666 444443332 4455566666666666665543333 34456666665553 222110 0134455555555
Q ss_pred ccCCCc
Q 002704 641 MFGNGY 646 (890)
Q Consensus 641 l~~~~~ 646 (890)
+-+|+.
T Consensus 120 ll~Npv 125 (233)
T KOG1644|consen 120 LLGNPV 125 (233)
T ss_pred ecCCch
Confidence 555544
No 209
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.02 E-value=0.0028 Score=75.88 Aligned_cols=46 Identities=24% Similarity=0.441 Sum_probs=37.3
Q ss_pred CcccchHHHHHHHHHHhcc-------C--CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCLVE-------E--PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++|.+..++.+...+.. . ...++.++|+.|+|||+||+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4568999999988888742 1 23468899999999999999999876
No 210
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0086 Score=69.42 Aligned_cols=103 Identities=23% Similarity=0.336 Sum_probs=64.5
Q ss_pred CcccchHHHHHHHHHHhcc---------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVE---------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQ 225 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 225 (890)
..++|.+..++.+.+.+.. ....+....|+.|||||-||++++..+ -+.=+..+-++.|.-.....+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsV- 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSV- 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHH-
Confidence 3578999999999999842 234678889999999999999999876 222244455555544332222
Q ss_pred HHHHHHhcCccccccccCHHHHHHHHHHHhcCCeE-EEEEecCC
Q 002704 226 EVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKF-VVLLDDIW 268 (890)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~ 268 (890)
.+-+|.+.. -.+.+. .-.|-+..+.++| +|.||+|.
T Consensus 567 ---SrLIGaPPG-YVGyee---GG~LTEaVRr~PySViLlDEIE 603 (786)
T COG0542 567 ---SRLIGAPPG-YVGYEE---GGQLTEAVRRKPYSVILLDEIE 603 (786)
T ss_pred ---HHHhCCCCC-Cceecc---ccchhHhhhcCCCeEEEechhh
Confidence 222333221 111111 2344556778888 77789985
No 211
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0084 Score=67.20 Aligned_cols=158 Identities=15% Similarity=0.180 Sum_probs=89.6
Q ss_pred CcccchHHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVE------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVI 228 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 228 (890)
+.-+|.++-+++|++++.- .+-+++..+|++|||||++|+.|+..+ .+.|. -+++..-.+..+|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkFf---RfSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKFF---RFSVGGMTDVAEIK--- 481 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCceE---EEeccccccHHhhc---
Confidence 4457999999999999832 345799999999999999999999988 33332 23455555554431
Q ss_pred HHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc---------ccccccccc---------CCCCCCCCcEE
Q 002704 229 GEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR---------VDLTKVGVP---------LPSSQTSASKV 290 (890)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------~~~~~~~~~---------l~~~~~~gs~i 290 (890)
+...+-.+.-....++.+. ..+..+-|+.||.|+.. ..+-++..| +.+-.-.=|||
T Consensus 482 -----GHRRTYVGAMPGkiIq~LK-~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 482 -----GHRRTYVGAMPGKIIQCLK-KVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred -----ccceeeeccCChHHHHHHH-hhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 1111112222233333332 23456778999998531 011111111 11111123566
Q ss_pred EE-ecCCH-H-H-HhcccCCceeecCCCChhhHHHHHHHHh
Q 002704 291 VF-TTRSE-E-V-CGLMEAHKKFKVQCLSGNDAWELFRQKV 327 (890)
Q Consensus 291 iv-TtR~~-~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 327 (890)
++ .|-|. + + ....+....|++.+...+|=..+-+++.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 54 33332 1 1 1222344688888888888777766654
No 212
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.028 Score=60.13 Aligned_cols=178 Identities=11% Similarity=0.031 Sum_probs=95.1
Q ss_pred HHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcC------
Q 002704 162 SQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGL------ 234 (890)
Q Consensus 162 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~------ 234 (890)
...+++...+..+++ ..+.+.|+.|+||+|+|..++..+.-. ..-+. ...+.-.-.+.+...-..
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~-~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ-QPQGH-------KSCGHCRGCQLMQAGTHPDYYTLT 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC-CCCCC-------CCCCCCHHHHHHHcCCCCCEEEEe
Confidence 345667777776654 567799999999999999987765210 00000 000000011111100000
Q ss_pred ccccccccCHHHHHHHHHHHh-----cCCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCH-HHHhc-ccC
Q 002704 235 LNETWKSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRSE-EVCGL-MEA 305 (890)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~-~~~ 305 (890)
+........+++..+ +.+.+ .+++=++|+|+++.. ..-..+...+..-. .++.+|++|.+. .+... .+.
T Consensus 81 p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 81 PEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP-ENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred cccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCC-CCeEEEEEECChhhChHHHHhc
Confidence 000000112222222 22222 356668899998643 22333333333333 566677666654 34322 334
Q ss_pred CceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHH
Q 002704 306 HKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALI 357 (890)
Q Consensus 306 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 357 (890)
...+.+.+++.+++.+.+.+..+. ++ +.+..+++.++|.|....
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~~-----~~---~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVTM-----SQ---DALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccCC-----CH---HHHHHHHHHcCCCHHHHH
Confidence 567899999999999888654321 11 447788999999997543
No 213
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.0053 Score=68.22 Aligned_cols=187 Identities=13% Similarity=0.179 Sum_probs=110.7
Q ss_pred CcccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
+.++|-+.-...|...+..+.. ......|+-|+||||+|+.++..+- -... .....+..-...++|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN-C~~~-------~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN-CENG-------PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc-CCCC-------CCCCcchhhhhhHhhhcCCc
Confidence 4568999999999999987654 4577899999999999999987762 1110 11112222222233333200
Q ss_pred Ccc---ccccccCHHHHHHHHHHHh-----cCCeEEEEEecCCC--ccccccccccCCCCCCCCcEEEEecCC-HHH-Hh
Q 002704 234 LLN---ETWKSRRIEQKALDIFRIL-----RGKKFVVLLDDIWQ--RVDLTKVGVPLPSSQTSASKVVFTTRS-EEV-CG 301 (890)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~~~~~~~~l~~~~~~gs~iivTtR~-~~v-~~ 301 (890)
... +......+++.. .|.+.. .++-=+.|+|+|.- ...|..+...+.... ...+.|+.|.+ +.+ ..
T Consensus 88 ~DviEiDaASn~gVddiR-~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP-~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 88 IDVIEIDAASNTGVDDIR-EIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPP-SHVKFILATTEPQKIPNT 165 (515)
T ss_pred ccchhhhhhhccChHHHH-HHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCc-cCeEEEEecCCcCcCchh
Confidence 000 000112222222 222222 34555889999953 345666555554444 45555555544 444 23
Q ss_pred cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchh
Q 002704 302 LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPL 354 (890)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl 354 (890)
..+....|.+..++.++-...+...+.......++ +....|++..+|...
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~---~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEE---DALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCccCH---HHHHHHHHHcCCChh
Confidence 34566889999999999999999888766554443 556666676666544
No 214
>PRK06921 hypothetical protein; Provisional
Probab=96.87 E-value=0.002 Score=66.54 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEe
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVV 215 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 215 (890)
....+.++|..|+|||+||.++++... +.....+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456899999999999999999999872 221345666653
No 215
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.00011 Score=72.16 Aligned_cols=100 Identities=25% Similarity=0.262 Sum_probs=71.0
Q ss_pred CcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEeccCCCccccch--HHhcCCcCCEe
Q 002704 537 PHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTSLISEIPE--ELKALVNLKCL 614 (890)
Q Consensus 537 ~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L 614 (890)
.+.+.|++.+|.+. ++ +++.+|+.|++|.|| -+.|+.|.+ +..+++|+.|.|+.|.|..+-+ -+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLS-vNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLS-VNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCcc-HH--HHHHhcccceeEEee-ccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34555666655543 22 346778888888888 677777644 6778888999998888876643 46788889999
Q ss_pred eccCCCCccccCh----hhhcCCccCcEeec
Q 002704 615 NLENTGLLLKIPL----QLISHFSRLHVLRM 641 (890)
Q Consensus 615 ~l~~~~~~~~~p~----~~i~~l~~L~~L~l 641 (890)
-|..|...+.-+. .++.-|+||++|+=
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 8888776665543 24667888888873
No 216
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.86 E-value=0.0014 Score=63.96 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEE
Q 002704 159 GLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVV 214 (890)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 214 (890)
.+..+....++.|. ...++.+.|++|.|||.||.+.+-+.. ..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v-~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELV-KEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHH-HTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCcEEEEEe
Confidence 34455566666666 456999999999999999998876542 247888887765
No 217
>PRK04132 replication factor C small subunit; Provisional
Probab=96.83 E-value=0.017 Score=68.41 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=95.4
Q ss_pred CCCChHHHHHHHHHhhccCCCCCC-ceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEE
Q 002704 184 MGGVGKTTLLTHINNKFLGSPTNF-DLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVV 262 (890)
Q Consensus 184 ~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~Ll 262 (890)
|.++||||+|..+++++. ...+ ..++-++.++......+...|-+...... . -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~---~--------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVIREKVKEFARTKP---I--------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC---c--------------CCCCCEEE
Confidence 779999999999998862 1222 24677888876666554433322221110 0 01245799
Q ss_pred EEecCCCcc--ccccccccCCCCCCCCcEEEEecCCH-HHHh-cccCCceeecCCCChhhHHHHHHHHhcCCccCCCccH
Q 002704 263 LLDDIWQRV--DLTKVGVPLPSSQTSASKVVFTTRSE-EVCG-LMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYI 338 (890)
Q Consensus 263 vlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l 338 (890)
|+|+++... ....+...+.... ...++|++|.+. .+.. ..+....+++.+++.++..+.+...+.......+
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~-~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~--- 710 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFS-SNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT--- 710 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCC-CCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---
Confidence 999997543 3444444443323 456666665554 3322 2234678999999999999888877654332222
Q ss_pred HHHHHHHHhHhCCchhHHHHHH
Q 002704 339 LELAQTVTKECGGLPLALITIG 360 (890)
Q Consensus 339 ~~~~~~i~~~c~GlPlai~~~~ 360 (890)
++....|++.++|.+..+..+-
T Consensus 711 ~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH
Confidence 3678899999999986554333
No 218
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.80 E-value=0.012 Score=60.89 Aligned_cols=55 Identities=29% Similarity=0.319 Sum_probs=35.5
Q ss_pred HHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHH
Q 002704 162 SQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESI 224 (890)
Q Consensus 162 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 224 (890)
.-++++..++..+ .-|.++|++|+|||++|+.+++.. ... .+.+++....+..++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~~---~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DRP---VMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CCC---EEEEeCCccCCHHHH
Confidence 3345555555543 456789999999999999998754 222 345566555554444
No 219
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.80 E-value=0.00041 Score=60.96 Aligned_cols=88 Identities=30% Similarity=0.438 Sum_probs=75.6
Q ss_pred cceEEEEccccccccccC--CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCccccCccCCCEEe
Q 002704 515 EKLRRLSLMENQIENLSE--VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLD 592 (890)
Q Consensus 515 ~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~ 592 (890)
..+..+++++|.+..+|. ..+++.+++|++.+|.+ ..+|.. +..++.||.|+++ ++.+...|.-|..|.+|-+|+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE-~Aam~aLr~lNl~-~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI-SDVPEE-LAAMPALRSLNLR-FNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh-hhchHH-HhhhHHhhhcccc-cCccccchHHHHHHHhHHHhc
Confidence 357778999999988765 35677999999996665 578888 8999999999999 888889999999999999999
Q ss_pred ccCCCccccchHH
Q 002704 593 LSTSLISEIPEEL 605 (890)
Q Consensus 593 L~~~~i~~lp~~l 605 (890)
..+|.+..+|-.+
T Consensus 130 s~~na~~eid~dl 142 (177)
T KOG4579|consen 130 SPENARAEIDVDL 142 (177)
T ss_pred CCCCccccCcHHH
Confidence 9999999998764
No 220
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.76 E-value=0.0011 Score=65.27 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=21.9
Q ss_pred HhcCCcCCEeeccCCCCccccChh---hhcCCccCcEeeccCCCc
Q 002704 605 LKALVNLKCLNLENTGLLLKIPLQ---LISHFSRLHVLRMFGNGY 646 (890)
Q Consensus 605 l~~l~~L~~L~l~~~~~~~~~p~~---~i~~l~~L~~L~l~~~~~ 646 (890)
+-++++|+..+|+.|-+....|+. .+++-+.|.+|.+++|..
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 344555666666655544444432 244555666666665544
No 221
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.72 E-value=0.014 Score=70.29 Aligned_cols=170 Identities=19% Similarity=0.207 Sum_probs=94.4
Q ss_pred cccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHH
Q 002704 156 TMVGLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLE 222 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (890)
.+.|.+..++++.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+..+
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f---i~v~~~------ 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF---IAVRGP------ 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehH------
Confidence 456888777777665531 234568999999999999999999886 3333 222111
Q ss_pred HHHHHHHHHhcCccccccccCHHHHHHHHHH-HhcCCeEEEEEecCCCcc-----c---------cccccccCCCC-CCC
Q 002704 223 SIQEVIGEKIGLLNETWKSRRIEQKALDIFR-ILRGKKFVVLLDDIWQRV-----D---------LTKVGVPLPSS-QTS 286 (890)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~-----~---------~~~~~~~l~~~-~~~ 286 (890)
+ +.... .+.+ +..+..+.. .-...+.+|++|+++... . ...+...+... ...
T Consensus 522 ~----l~~~~-------vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 E----ILSKW-------VGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred H----Hhhcc-------cCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 1 11111 1122 223333333 334577999999985310 0 01111112111 113
Q ss_pred CcEEEEecCCHHHHhc--c---cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCch
Q 002704 287 ASKVVFTTRSEEVCGL--M---EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLP 353 (890)
Q Consensus 287 gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (890)
+..||.||...+..+. . .-+..+.+...+.++-.++|+.+........+.+ ...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 4456667766544221 1 2456788888999999999987665433222222 345667777754
No 222
>PRK09183 transposase/IS protein; Provisional
Probab=96.72 E-value=0.0031 Score=65.03 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
...+.|+|++|+|||+||..++...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999998765
No 223
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.71 E-value=0.0024 Score=67.53 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=44.9
Q ss_pred cccchHHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHhhccC----CCCCCceEEE
Q 002704 156 TMVGLQSQLEEVWRCLVE------EPVGIVGLYGMGGVGKTTLLTHINNKFLG----SPTNFDLVIL 212 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~~f~~~~w 212 (890)
.++|.++.++++++++.. ...+++.++|++|+||||||+.+++.+.. ..+.|...-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 578999999999999854 34588999999999999999999887721 1235555566
No 224
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.00098 Score=65.76 Aligned_cols=85 Identities=28% Similarity=0.216 Sum_probs=42.0
Q ss_pred ccCCCCcEEEeecC--CCCcccCccccCccCCCEEeccCCCccc---cchHHhcCCcCCEeeccCCCCcccc--Chhhhc
Q 002704 559 QSMPSLKVLNLSRY--MGLLELPSGISKLVSLEHLDLSTSLISE---IPEELKALVNLKCLNLENTGLLLKI--PLQLIS 631 (890)
Q Consensus 559 ~~l~~L~~L~L~~~--~~i~~lp~~i~~L~~L~~L~L~~~~i~~---lp~~l~~l~~L~~L~l~~~~~~~~~--p~~~i~ 631 (890)
-.|++|+.|.++.| .....++....++++|++|++++|+|+- ++ .+..+.+|..|++.+|...... -..++.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 33455555555533 1222333334444666666666665542 22 2455566666666666432211 122355
Q ss_pred CCccCcEeeccCC
Q 002704 632 HFSRLHVLRMFGN 644 (890)
Q Consensus 632 ~l~~L~~L~l~~~ 644 (890)
-+++|++|+-..+
T Consensus 141 ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 141 LLPSLKYLDGCDV 153 (260)
T ss_pred Hhhhhcccccccc
Confidence 5667777665443
No 225
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.69 E-value=0.0013 Score=59.30 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+|.|.|++|+||||+|+.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 226
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.68 E-value=0.0073 Score=61.88 Aligned_cols=74 Identities=26% Similarity=0.320 Sum_probs=47.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
...-+.++|.+|+|||.||.++.+... +..+ .+.++ +..++...+....... .. ..++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~-sv~f~------~~~el~~~Lk~~~~~~-------~~---~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAGI-SVLFI------TAPDLLSKLKAAFDEG-------RL---EEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEE------EHHHHHHHHHHHHhcC-------ch---HHHHHHH
Confidence 667899999999999999999999983 2223 45555 4456666666654321 11 1122222
Q ss_pred hcCCeEEEEEecCC
Q 002704 255 LRGKKFVVLLDDIW 268 (890)
Q Consensus 255 l~~~~~LlvlDdv~ 268 (890)
+ .+-=||||||+-
T Consensus 165 l-~~~dlLIiDDlG 177 (254)
T COG1484 165 L-KKVDLLIIDDIG 177 (254)
T ss_pred h-hcCCEEEEeccc
Confidence 2 223489999984
No 227
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.68 E-value=0.057 Score=58.33 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 161 QSQLEEVWRCLVE---EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 161 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+...+.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+.+
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4456667777754 467899999999999999999999888
No 228
>PRK06526 transposase; Provisional
Probab=96.65 E-value=0.0016 Score=66.64 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..-+.++|++|+|||+||..+....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4568999999999999999998876
No 229
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.65 E-value=0.0088 Score=72.52 Aligned_cols=46 Identities=28% Similarity=0.443 Sum_probs=37.5
Q ss_pred CcccchHHHHHHHHHHhcc-------C--CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCLVE-------E--PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999998888742 1 12478999999999999999999776
No 230
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.00095 Score=65.85 Aligned_cols=86 Identities=24% Similarity=0.344 Sum_probs=58.5
Q ss_pred hccCCCCcEEEeecCCCCcccCccccCccCCCEEeccCC--Ccc-ccchHHhcCCcCCEeeccCCCCc--cccChhhhcC
Q 002704 558 LQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHLDLSTS--LIS-EIPEELKALVNLKCLNLENTGLL--LKIPLQLISH 632 (890)
Q Consensus 558 ~~~l~~L~~L~L~~~~~i~~lp~~i~~L~~L~~L~L~~~--~i~-~lp~~l~~l~~L~~L~l~~~~~~--~~~p~~~i~~ 632 (890)
...+..|+.|++. |..++.+- .+-.|++|++|.++.| .+. .++....++++|++|++++|++- ..+++ +..
T Consensus 39 ~d~~~~le~ls~~-n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVI-NVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKE 114 (260)
T ss_pred cccccchhhhhhh-ccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhh
Confidence 3445566666666 44443331 2335789999999999 555 66666777899999999998632 33433 567
Q ss_pred CccCcEeeccCCCcC
Q 002704 633 FSRLHVLRMFGNGYF 647 (890)
Q Consensus 633 l~~L~~L~l~~~~~~ 647 (890)
+.+|..|++++|+..
T Consensus 115 l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVT 129 (260)
T ss_pred hcchhhhhcccCCcc
Confidence 788888898888764
No 231
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.62 E-value=0.037 Score=54.47 Aligned_cols=170 Identities=16% Similarity=0.247 Sum_probs=98.9
Q ss_pred CcccchHHHHHH---HHHHhccC------CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHH
Q 002704 155 PTMVGLQSQLEE---VWRCLVEE------PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQ 225 (890)
Q Consensus 155 ~~~~Gr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 225 (890)
..++|.+....+ |++.|.+. ..+-|..+|++|.|||-+|+++++.. +-.|- .| ...
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~l---~v---------kat 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLL---LV---------KAT 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCceE---Ee---------chH
Confidence 456898876654 66777652 46789999999999999999999986 32321 11 111
Q ss_pred HHHHHHhcCccccccccCHHHHHHHHHHHhc-CCeEEEEEecCCCc----------cccc----cccccCCC-CCCCCcE
Q 002704 226 EVIGEKIGLLNETWKSRRIEQKALDIFRILR-GKKFVVLLDDIWQR----------VDLT----KVGVPLPS-SQTSASK 289 (890)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~----------~~~~----~~~~~l~~-~~~~gs~ 289 (890)
.-|.+..| +....+.++.++.+ .-++++++|.++.. -+.. .+...+.. ..+.|-.
T Consensus 186 ~liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 ELIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 12222222 23344555555553 47899999987521 1111 11111211 1225666
Q ss_pred EEEecCCHHHHhcc---cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCc
Q 002704 290 VVFTTRSEEVCGLM---EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGL 352 (890)
Q Consensus 290 iivTtR~~~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 352 (890)
.|-.|.+.++.+.. .-...|+...-+++|-.++++..+.....+.+.. .+.++++.+|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 66666666553321 2234667777788899999988876554333322 45566666665
No 232
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.61 E-value=0.0013 Score=63.50 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=43.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
...-+.++|..|+|||.||..+.+... ... ..+.|+. ..+++..+-..- .....+... +.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g-~~v~f~~------~~~L~~~l~~~~-------~~~~~~~~~----~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKG-YSVLFIT------ASDLLDELKQSR-------SDGSYEELL----KR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCCH-------CCTTHCHHH----HH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCC-cceeEee------cCceeccccccc-------cccchhhhc----Cc
Confidence 346799999999999999999998773 222 3456663 455555554321 112222322 23
Q ss_pred hcCCeEEEEEecCCC
Q 002704 255 LRGKKFVVLLDDIWQ 269 (890)
Q Consensus 255 l~~~~~LlvlDdv~~ 269 (890)
+.+ -=||||||+-.
T Consensus 106 l~~-~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LKR-VDLLILDDLGY 119 (178)
T ss_dssp HHT-SSCEEEETCTS
T ss_pred ccc-ccEecccccce
Confidence 333 34778999853
No 233
>PRK04296 thymidine kinase; Provisional
Probab=96.59 E-value=0.0019 Score=63.34 Aligned_cols=113 Identities=16% Similarity=0.052 Sum_probs=61.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILR 256 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (890)
.++.|+|..|.||||+|..++.+.. .+...++.+. ..++.+.....++..++...........++....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4778999999999999999888762 2333344442 1112122233455555543221112334455555544 33
Q ss_pred CCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCHH
Q 002704 257 GKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRSEE 298 (890)
Q Consensus 257 ~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~ 298 (890)
++.-+||+|.+.-- .+..++...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---HHcCCeEEEEecCcc
Confidence 34558999998321 1122222211 126788999998853
No 234
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.55 E-value=0.0046 Score=75.04 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=37.6
Q ss_pred CcccchHHHHHHHHHHhcc-------C--CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCLVE-------E--PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++|.+..++.+...+.. . ...++.++|+.|+|||+||+.+++.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 5678999999999888842 1 13467789999999999999999876
No 235
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.53 E-value=0.0074 Score=73.45 Aligned_cols=60 Identities=25% Similarity=0.398 Sum_probs=44.1
Q ss_pred CcccchHHHHHHHHHHhccC---------CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCC
Q 002704 155 PTMVGLQSQLEEVWRCLVEE---------PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSK 217 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (890)
..++|.+..++.+...+... ...++.++|+.|+|||++|+.+..... ..-...+.++++.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~---~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF---DDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc---CCCCcEEEEechh
Confidence 45789999999999888531 245788999999999999999998762 2223344455554
No 236
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.067 Score=52.17 Aligned_cols=195 Identities=18% Similarity=0.219 Sum_probs=105.9
Q ss_pred chHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHH
Q 002704 159 GLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQ 225 (890)
Q Consensus 159 Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 225 (890)
|.|+++++|.+.++- ...+-|.++|++|.|||-||++|+++- ...|+.||.. +-++
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---elvq 219 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---ELVQ 219 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---HHHH
Confidence 567778777766531 456789999999999999999999875 2345666654 1122
Q ss_pred HHHHHHhcCccccccccCHHHHHHHHHHHh-cCCeEEEEEecCCCcc------------c----cccccccCCCC-CCCC
Q 002704 226 EVIGEKIGLLNETWKSRRIEQKALDIFRIL-RGKKFVVLLDDIWQRV------------D----LTKVGVPLPSS-QTSA 287 (890)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~------------~----~~~~~~~l~~~-~~~g 287 (890)
+-|.+ .......++-.. ..-+-+|+.|++++.- + ..++...+... ..+.
T Consensus 220 k~ige-------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 220 KYIGE-------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHhhh-------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 22211 112222222222 2356788888875310 0 11112222111 1256
Q ss_pred cEEEEecCCHHHHhc-----ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHH
Q 002704 288 SKVVFTTRSEEVCGL-----MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRA 362 (890)
Q Consensus 288 s~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~ 362 (890)
-|||..|..-++.+. -.-+..|+..+-+++.-.++++-+........--+++.+|+++....|.--.++.+=|++
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm 366 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGM 366 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhH
Confidence 788887766555322 123457788887777777777765544332222345666666654444444444444443
Q ss_pred h--ccC---CChhHHHHHHH
Q 002704 363 M--ACK---KTPEEWSYAIQ 377 (890)
Q Consensus 363 l--~~~---~~~~~w~~~~~ 377 (890)
. +.+ -+.++++-+..
T Consensus 367 ~alrerrvhvtqedfemav~ 386 (404)
T KOG0728|consen 367 YALRERRVHVTQEDFEMAVA 386 (404)
T ss_pred HHHHHhhccccHHHHHHHHH
Confidence 3 222 24555655443
No 237
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.51 E-value=0.0073 Score=59.22 Aligned_cols=89 Identities=20% Similarity=0.193 Sum_probs=50.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCccccc-cccCHHHHHHHHHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNETW-KSRRIEQKALDIFR 253 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 253 (890)
.++|.++|+.|+||||.+.+++..+. ..-..+..++..... ...+-++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~---~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK---LKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh---hccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 36899999999999988888877762 224456666654332 34555677777777653211 11223333333223
Q ss_pred HhcCC-eEEEEEecC
Q 002704 254 ILRGK-KFVVLLDDI 267 (890)
Q Consensus 254 ~l~~~-~~LlvlDdv 267 (890)
..+.+ -=+|++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 33332 236667754
No 238
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.51 E-value=0.016 Score=58.68 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=50.8
Q ss_pred HHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCcccccc
Q 002704 163 QLEEVWRCLVE--EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWK 240 (890)
Q Consensus 163 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 240 (890)
.+..+.++..+ .....+.++|.+|+|||+||..+++... ..-..+++++ ..++...+...... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 34444444433 2335789999999999999999999873 2233555553 44555555443321 1
Q ss_pred ccCHHHHHHHHHHHhcCCeEEEEEecCCC
Q 002704 241 SRRIEQKALDIFRILRGKKFVVLLDDIWQ 269 (890)
Q Consensus 241 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 269 (890)
..+.+. +.+.+. +.=+|||||+..
T Consensus 150 ~~~~~~----~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 150 ETSEEQ----LLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred cccHHH----HHHHhc-cCCEEEEeCCCC
Confidence 112222 223344 334888899853
No 239
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.50 E-value=0.016 Score=58.09 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=37.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQE 226 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 226 (890)
.-.++.|+|++|+|||+++.+++... ......++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 35799999999999999999988765 23456889999876 66555544
No 240
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.48 E-value=0.014 Score=61.52 Aligned_cols=117 Identities=22% Similarity=0.195 Sum_probs=65.8
Q ss_pred chHHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002704 159 GLQSQLEEVWRCLVE----EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGL 234 (890)
Q Consensus 159 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (890)
++....+...+++.. ...+-+.++|..|+|||.||.++++... ...+ .+.++++ .++...+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEH------HHHHHHHHHHHhc
Confidence 455555555666643 2456899999999999999999999983 2233 3455544 3555566554421
Q ss_pred ccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc--ccccc--ccccC-CCCCCCCcEEEEecCC
Q 002704 235 LNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR--VDLTK--VGVPL-PSSQTSASKVVFTTRS 296 (890)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~--~~~~l-~~~~~~gs~iivTtR~ 296 (890)
.+..+... .+ .+-=||||||+... .+|.. +...+ ...-..+..+|+||--
T Consensus 206 -------~~~~~~l~----~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -------GSVKEKID----AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -------CcHHHHHH----Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 12222222 22 34568999998532 34532 32222 1110134457777753
No 241
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.47 E-value=0.03 Score=56.89 Aligned_cols=90 Identities=21% Similarity=0.217 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCC------ceEEEEEeCCCCCHHHHHHHHHHHhcCccc-------cccc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNF------DLVILVVVSKDLRLESIQEVIGEKIGLLNE-------TWKS 241 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~ 241 (890)
.-.++.|+|.+|+|||++|.+++... .... ..++|++....++...+. .+++..+.... -...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 35799999999999999999987664 1222 568999988777765544 33333221110 0012
Q ss_pred cCHHHHHHHHHHHhc----CCeEEEEEecCC
Q 002704 242 RRIEQKALDIFRILR----GKKFVVLLDDIW 268 (890)
Q Consensus 242 ~~~~~~~~~l~~~l~----~~~~LlvlDdv~ 268 (890)
.+.++....+.+... .+.-+||+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 344555555544432 345588999873
No 242
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.46 E-value=0.012 Score=55.02 Aligned_cols=115 Identities=22% Similarity=0.162 Sum_probs=60.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCC---CCHHHHHHHHHHHh-----cCccccccccCHH---
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKD---LRLESIQEVIGEKI-----GLLNETWKSRRIE--- 245 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~l-----~~~~~~~~~~~~~--- 245 (890)
..|-|++..|.||||+|...+-+. ..+-..+.++..-+. .....+++.+- .+ +.. ..+...+.+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~-~~~~~~~~~~~~ 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRG-FFWTTENDEEDI 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCC-CccCCCChHHHH
Confidence 578899999999999998877665 223334555444333 23333333320 00 000 000011111
Q ss_pred ----HHHHHHHHHhcC-CeEEEEEecCCCc-----cccccccccCCCCCCCCcEEEEecCCH
Q 002704 246 ----QKALDIFRILRG-KKFVVLLDDIWQR-----VDLTKVGVPLPSSQTSASKVVFTTRSE 297 (890)
Q Consensus 246 ----~~~~~l~~~l~~-~~~LlvlDdv~~~-----~~~~~~~~~l~~~~~~gs~iivTtR~~ 297 (890)
+.....++.+.. .-=|||||++-.. .+.+.+...+.... .+.-||+|.|+.
T Consensus 78 ~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp-~~~evIlTGr~~ 138 (159)
T cd00561 78 AAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP-EDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC-CCCEEEEECCCC
Confidence 122223334444 3459999998432 33344444443333 667899999985
No 243
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.027 Score=61.02 Aligned_cols=45 Identities=29% Similarity=0.334 Sum_probs=35.6
Q ss_pred cccchHH---HHHHHHHHhccC--------C-ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 156 TMVGLQS---QLEEVWRCLVEE--------P-VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 156 ~~~Gr~~---~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.+-|-|+ |+++|+++|.+. . .+-|.++|++|.|||-||++|+-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4557664 667788888762 2 4679999999999999999999876
No 244
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.098 Score=58.32 Aligned_cols=87 Identities=23% Similarity=0.273 Sum_probs=45.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
..+|+|+|.+|+||||++..++..+. .+.....+..++..... ...+-+......++.... ...+...+...+. .
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~-~ 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE-R 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-H
Confidence 47999999999999999999887652 12222345555432211 112222223333333221 1223334444333 3
Q ss_pred hcCCeEEEEEecC
Q 002704 255 LRGKKFVVLLDDI 267 (890)
Q Consensus 255 l~~~~~LlvlDdv 267 (890)
+.+ .=+||+|..
T Consensus 426 l~~-~DLVLIDTa 437 (559)
T PRK12727 426 LRD-YKLVLIDTA 437 (559)
T ss_pred hcc-CCEEEecCC
Confidence 333 448888886
No 245
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.44 E-value=0.0076 Score=67.73 Aligned_cols=72 Identities=25% Similarity=0.358 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
..++..++|++|+||||||+-++++. .| .++-+++|+..+...+-+.|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45799999999999999999998764 23 4788899999988888888877664332 2
Q ss_pred h--cCCeEEEEEecCCC
Q 002704 255 L--RGKKFVVLLDDIWQ 269 (890)
Q Consensus 255 l--~~~~~LlvlDdv~~ 269 (890)
+ .+++.-||+|+++.
T Consensus 382 l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDG 398 (877)
T ss_pred cccCCCcceEEEecccC
Confidence 2 26888899999864
No 246
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.43 E-value=0.044 Score=54.60 Aligned_cols=207 Identities=13% Similarity=0.160 Sum_probs=118.6
Q ss_pred ccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccC---CCCCCceEEEEEeCCC----------C----
Q 002704 157 MVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLG---SPTNFDLVILVVVSKD----------L---- 219 (890)
Q Consensus 157 ~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~----------~---- 219 (890)
+.++++....+......++.+...++|++|.||-|.+..+.+...- .+-.-+..-|.+-|.. +
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 5577888888887777788899999999999999888776655421 1123344455543332 1
Q ss_pred -------CHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeE-EEEEecCCCc--cccccccccCCCCCCCCcE
Q 002704 220 -------RLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKF-VVLLDDIWQR--VDLTKVGVPLPSSQTSASK 289 (890)
Q Consensus 220 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~ 289 (890)
.-+.+.++|++....... + +.-.++.| ++|+-.+++. +....++.....-. ..+|
T Consensus 95 tPSDaG~~DRvViQellKevAQt~q------i--------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs-~~~R 159 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQ------I--------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS-SNCR 159 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcc------h--------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh-cCce
Confidence 112333344433322110 0 01123344 4555555432 22233332222223 5667
Q ss_pred EEEecCCH--HHHhcccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchh-HHHHHHHHhcc-
Q 002704 290 VVFTTRSE--EVCGLMEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPL-ALITIGRAMAC- 365 (890)
Q Consensus 290 iivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~~~~l~~- 365 (890)
+|+...+. -+...-+..-.+++...+++|....+...+.......+ ++++.+|+++++|.-. |+-++ .+++-
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllml-E~~~~~ 235 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLML-EAVRVN 235 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHH-HHHHhc
Confidence 77643321 11222223456889999999999999988876655444 4899999999998754 44333 22221
Q ss_pred C---------CChhHHHHHHHHHhcc
Q 002704 366 K---------KTPEEWSYAIQVLRTS 382 (890)
Q Consensus 366 ~---------~~~~~w~~~~~~l~~~ 382 (890)
+ -..-+|+-+...+...
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHH
Confidence 1 1356899888776654
No 247
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.13 Score=54.96 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=56.5
Q ss_pred CCeEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCC-HHHH-hcccCCceeecCCCChhhHHHHHHHHhcCCcc
Q 002704 257 GKKFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRS-EEVC-GLMEAHKKFKVQCLSGNDAWELFRQKVGEETL 332 (890)
Q Consensus 257 ~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 332 (890)
+++=++|+|+++.. .....+...+..-. .++.+|++|.+ ..+. ...+....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPP-PGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-V--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCC-cCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-C---
Confidence 44558888998643 33444444444434 56666666655 4443 223345789999999999999987651 1
Q ss_pred CCCccHHHHHHHHHhHhCCchhHHHHHH
Q 002704 333 NCHPYILELAQTVTKECGGLPLALITIG 360 (890)
Q Consensus 333 ~~~~~l~~~~~~i~~~c~GlPlai~~~~ 360 (890)
++ ...++..++|.|..+..+.
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1235778899998654443
No 248
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.40 E-value=0.0094 Score=60.45 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=35.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESI 224 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 224 (890)
.-.++.|+|.+|+|||++|.+++.... .....++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 347999999999999999999987762 334678999887 5555444
No 249
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.39 E-value=0.062 Score=61.66 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=38.0
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhh
Q 002704 156 TMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNK 199 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 199 (890)
.++|.+..++.+...+......-|.|+|++|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999988876666667889999999999999999864
No 250
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.016 Score=62.73 Aligned_cols=138 Identities=16% Similarity=0.185 Sum_probs=79.8
Q ss_pred ccchHHHHHHHHHHhcc-CCceE-EEEEcCCCChHHHHHHHHHhhccCCCC------------------CCceEEEEEeC
Q 002704 157 MVGLQSQLEEVWRCLVE-EPVGI-VGLYGMGGVGKTTLLTHINNKFLGSPT------------------NFDLVILVVVS 216 (890)
Q Consensus 157 ~~Gr~~~~~~l~~~L~~-~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~s 216 (890)
++|-+....++..+..+ ++... +.++|++|+||||+|..+++.+..... ..+-+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 46777788888888864 44555 999999999999999999987721110 12334455555
Q ss_pred CCCC---HHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCccc--cccccccCCCCCCCCcEEE
Q 002704 217 KDLR---LESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRVD--LTKVGVPLPSSQTSASKVV 291 (890)
Q Consensus 217 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~~~~~l~~~~~~gs~ii 291 (890)
.... ..+..+.+.+...... ..++.-++++|+++.... -..+...+.... ....+|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lEep~-~~~~~i 143 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPP-KNTRFI 143 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCC-CCeEEE
Confidence 4443 2333444443332211 036678999999965422 223333333333 567788
Q ss_pred EecCCH-HHHh-cccCCceeecCC
Q 002704 292 FTTRSE-EVCG-LMEAHKKFKVQC 313 (890)
Q Consensus 292 vTtR~~-~v~~-~~~~~~~~~l~~ 313 (890)
++|.+. .+.. .-.....+++.+
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEcCChhhccchhhhcceeeecCC
Confidence 777743 2322 122345666666
No 251
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.049 Score=62.93 Aligned_cols=175 Identities=17% Similarity=0.191 Sum_probs=100.7
Q ss_pred CcccchHHHHHHH---HHHhcc---------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHH
Q 002704 155 PTMVGLQSQLEEV---WRCLVE---------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLE 222 (890)
Q Consensus 155 ~~~~Gr~~~~~~l---~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (890)
.++.|-|+.+++| +++|.+ .-++-+.++|++|+|||-||++++... . +-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---g-----VPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---G-----VPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc---C-----CceeeechH----
Confidence 3567877655554 555544 235679999999999999999999875 2 233444443
Q ss_pred HHHHHHHHHhcCccccccccCHHHHHHHHHHHh-cCCeEEEEEecCCCcc-----------------ccccccccCCCCC
Q 002704 223 SIQEVIGEKIGLLNETWKSRRIEQKALDIFRIL-RGKKFVVLLDDIWQRV-----------------DLTKVGVPLPSSQ 284 (890)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~-----------------~~~~~~~~l~~~~ 284 (890)
+. .+.+.. .. ..++..+.... ...+.+|.+|+++... .+.++...+....
T Consensus 379 EF----vE~~~g-------~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 EF----VEMFVG-------VG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred HH----HHHhcc-------cc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 11 111111 11 23333344333 3578899999875321 1222222221111
Q ss_pred C-CCcEEEEecCCHHHHhc--c---cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHH
Q 002704 285 T-SASKVVFTTRSEEVCGL--M---EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLAL 356 (890)
Q Consensus 285 ~-~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 356 (890)
. .+--++-+|...++.+. + .-+..+.++.-+.....++|.-++...... .+..++.+ |+...-|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 1 22233335655555322 1 245678888888899999999988665432 23346666 888888887654
No 252
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.34 E-value=0.013 Score=59.81 Aligned_cols=90 Identities=20% Similarity=0.328 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCC-ceEEEEEeCCCC-CHHHHHHHHHHHhcCcc-----ccccccCHHH-
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNF-DLVILVVVSKDL-RLESIQEVIGEKIGLLN-----ETWKSRRIEQ- 246 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 246 (890)
.-..++|.|.+|+|||||++.+++.. +.+| +.++++-+.+.. .+.++.+.+.+.-.... .+.+......
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34689999999999999999999987 3233 456666666654 35566666654321110 0001111111
Q ss_pred ----HHHHHHHHh--c-CCeEEEEEecC
Q 002704 247 ----KALDIFRIL--R-GKKFVVLLDDI 267 (890)
Q Consensus 247 ----~~~~l~~~l--~-~~~~LlvlDdv 267 (890)
..-.+-+++ + ++.+|+++||+
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 112233444 3 89999999998
No 253
>PRK06696 uridine kinase; Validated
Probab=96.34 E-value=0.0055 Score=61.95 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHhc---cCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 159 GLQSQLEEVWRCLV---EEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 159 Gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.|++-+++|.+.+. .+...+|+|.|.+|+||||+|+.+...+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 46777788888774 3567899999999999999999999887
No 254
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.32 E-value=0.017 Score=65.35 Aligned_cols=54 Identities=28% Similarity=0.383 Sum_probs=40.9
Q ss_pred ccchHHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEe
Q 002704 157 MVGLQSQLEEVWRCLVE-----EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVV 215 (890)
Q Consensus 157 ~~Gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 215 (890)
++--.+-++++..||.+ ...+++.+.|++|+||||.++.+++.+ .|+.+-|.+-
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~np 79 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWINP 79 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecCC
Confidence 33345567888888854 235789999999999999999999876 5666777643
No 255
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.013 Score=68.00 Aligned_cols=152 Identities=17% Similarity=0.226 Sum_probs=87.4
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCc-----eEEEEEeCCCCCHHHHHHHHHH
Q 002704 156 TMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFD-----LVILVVVSKDLRLESIQEVIGE 230 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-----~~~wv~~s~~~~~~~~~~~i~~ 230 (890)
.++||+.+++++++.|......--.++|.+|||||++|.-++.+.. .+.-+ ..++. -+|..
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~s------------LD~g~ 236 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYS------------LDLGS 236 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEE------------ecHHH
Confidence 4679999999999999764434445789999999999988887762 22111 11110 01111
Q ss_pred HhcCccccccccCHHHHHHHHHHHhc-CCeEEEEEecCCCccc--------c--ccc-cccCCCCCCCCcEEEEecCCHH
Q 002704 231 KIGLLNETWKSRRIEQKALDIFRILR-GKKFVVLLDDIWQRVD--------L--TKV-GVPLPSSQTSASKVVFTTRSEE 298 (890)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~~--------~--~~~-~~~l~~~~~~gs~iivTtR~~~ 298 (890)
-..+.. -..+.+++...+.+.++ ..+.+|++|.+..... . ..+ .+.+..+ .-..|=-||-++-
T Consensus 237 LvAGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--eL~~IGATT~~EY 311 (786)
T COG0542 237 LVAGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--ELRCIGATTLDEY 311 (786)
T ss_pred Hhcccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--CeEEEEeccHHHH
Confidence 111111 23356666666666554 4589999999843211 1 111 2222221 2223444555432
Q ss_pred H------HhcccCCceeecCCCChhhHHHHHHHH
Q 002704 299 V------CGLMEAHKKFKVQCLSGNDAWELFRQK 326 (890)
Q Consensus 299 v------~~~~~~~~~~~l~~L~~~~~~~lf~~~ 326 (890)
- +......+.+.+..-+.+++..+++-.
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 1 222234568889999999999888654
No 256
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.046 Score=60.40 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=87.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
...-|.+||++|+|||-||++|+|.. +-.| ++|-.. ++ +... .+.++......+++.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----EL----lNkY-------VGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----EL----LNKY-------VGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HH----HHHH-------hhhHHHHHHHHHHHh
Confidence 45678999999999999999999986 4454 333222 11 1111 222233333333444
Q ss_pred hcCCeEEEEEecCCCc-------cc------cccccccCCCC-CCCCcEEEEecCCHHHHh--cc---cCCceeecCCCC
Q 002704 255 LRGKKFVVLLDDIWQR-------VD------LTKVGVPLPSS-QTSASKVVFTTRSEEVCG--LM---EAHKKFKVQCLS 315 (890)
Q Consensus 255 l~~~~~LlvlDdv~~~-------~~------~~~~~~~l~~~-~~~gs~iivTtR~~~v~~--~~---~~~~~~~l~~L~ 315 (890)
-..-+++|+||.++.. .. ..++...+... ...|--||-.|...++.+ .+ .-+...-++.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 4568999999998632 11 11222222221 114555666665555422 12 234567788888
Q ss_pred hhhHHHHHHHHhcCCc--cCCCccHHHHHHHHHhHhCCch
Q 002704 316 GNDAWELFRQKVGEET--LNCHPYILELAQTVTKECGGLP 353 (890)
Q Consensus 316 ~~~~~~lf~~~~~~~~--~~~~~~l~~~~~~i~~~c~GlP 353 (890)
.+|-.++++....... ...+-++++++.. .+|.|.-
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 8999999998887322 2233355555543 2455554
No 257
>PRK06762 hypothetical protein; Provisional
Probab=96.26 E-value=0.027 Score=53.93 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.+|.|.|++|+||||+|+.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 258
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.25 E-value=0.022 Score=53.57 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCeEEEEEecC----CCccccccccccCCCCCCCCcEEEEecCCHHHHhccc
Q 002704 246 QKALDIFRILRGKKFVVLLDDI----WQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVCGLME 304 (890)
Q Consensus 246 ~~~~~l~~~l~~~~~LlvlDdv----~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~ 304 (890)
+..-.+.+.+-+++-+++-|+- +-...|+-+ ..|..-...|..||++|.+..+.+.+.
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3333456667788889998874 222334432 223222237899999999998877653
No 259
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.25 E-value=0.0077 Score=72.74 Aligned_cols=46 Identities=26% Similarity=0.435 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHhcc---------CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCLVE---------EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++|.+..++.+.+.+.. ....++.++|+.|+|||.+|+.++..+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999988832 123578999999999999999998876
No 260
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.69 Score=50.02 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=81.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILR 256 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (890)
+-..++|++|.|||+++.++++.+ .|+..- +..+...+-.+ ++.++.. .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~~n~d-Lr~LL~~------------------------t 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVKLDSD-LRHLLLA------------------------T 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeeccccCcHH-HHHHHHh------------------------C
Confidence 567899999999999999999987 344221 11111111111 1211111 2
Q ss_pred CCeEEEEEecCCCccc-----------cc---------cccccCC---CCCCCCcEEEEecCCHHHH-----hcccCCce
Q 002704 257 GKKFVVLLDDIWQRVD-----------LT---------KVGVPLP---SSQTSASKVVFTTRSEEVC-----GLMEAHKK 308 (890)
Q Consensus 257 ~~~~LlvlDdv~~~~~-----------~~---------~~~~~l~---~~~~~gs~iivTtR~~~v~-----~~~~~~~~ 308 (890)
..+-+||+.|++-..+ .. -+...+. ...|...-||.||-..+-. ..-..+..
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 3456777777752211 11 0111111 1111223445577765432 21224457
Q ss_pred eecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHh
Q 002704 309 FKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAM 363 (890)
Q Consensus 309 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l 363 (890)
+.+.-=+.+....|+....+... +. .++.+|.+.-.|.-+.-..++..|
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~---~h---~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE---DH---RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC---Cc---chhHHHHHHhhcCccCHHHHHHHH
Confidence 78888889999999998887643 11 566677666666655544555444
No 261
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.23 E-value=0.011 Score=62.08 Aligned_cols=86 Identities=21% Similarity=0.197 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccc---cccCHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETW---KSRRIEQKALDI 251 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 251 (890)
.-+++-|+|++|+||||||.+++... ...-..++|++....++.. .+++++...+.. ...+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35789999999999999999987665 2334568899887766643 344554432211 223455555555
Q ss_pred HHHhc-CCeEEEEEecCC
Q 002704 252 FRILR-GKKFVVLLDDIW 268 (890)
Q Consensus 252 ~~~l~-~~~~LlvlDdv~ 268 (890)
...++ +..-+||+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55443 456689999973
No 262
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.22 E-value=0.011 Score=57.31 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEE
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILV 213 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 213 (890)
...+|.+.|+.|+||||+|+.+++.+ ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 34689999999999999999999987 3445555555
No 263
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.21 E-value=0.019 Score=55.92 Aligned_cols=46 Identities=30% Similarity=0.485 Sum_probs=37.6
Q ss_pred CcccchHHHHHHHHHHh----ccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCL----VEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++|.|...+.+++-- ..-...-|.+||.-|+|||+|++++.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 45689999888887544 33455679999999999999999999988
No 264
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.18 E-value=0.002 Score=63.50 Aligned_cols=84 Identities=25% Similarity=0.315 Sum_probs=46.1
Q ss_pred CCcceEEEeccCCCccccChh---hhccCCCCcEEEeecCCCC----cccC-------ccccCccCCCEEeccCCCcc-c
Q 002704 536 CPHLLTLFLNNDGLLRIINSD---FLQSMPSLKVLNLSRYMGL----LELP-------SGISKLVSLEHLDLSTSLIS-E 600 (890)
Q Consensus 536 ~~~Lr~L~L~~~~~~~~~~~~---~~~~l~~L~~L~L~~~~~i----~~lp-------~~i~~L~~L~~L~L~~~~i~-~ 600 (890)
+..+..++|++|.+...-... .+.+-++|++.+++ .... ..+| +.+-+|++|+..+||.|-+. .
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfs-d~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFS-DAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehh-hhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 344555556655543321111 13344566666665 2211 1233 23456778888888887554 3
Q ss_pred cch----HHhcCCcCCEeeccCCC
Q 002704 601 IPE----ELKALVNLKCLNLENTG 620 (890)
Q Consensus 601 lp~----~l~~l~~L~~L~l~~~~ 620 (890)
.|+ -+++-+.|.||.+++|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 333 45667788888888875
No 265
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.18 E-value=0.026 Score=57.74 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCC----CCceEEEEEeCCCCCHHHHHHHHHHHhcCcccc-------ccccC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPT----NFDLVILVVVSKDLRLESIQEVIGEKIGLLNET-------WKSRR 243 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 243 (890)
.-.++.|+|.+|+|||++|.+++-.. .... ....++|++....++...+.+ +++..+..... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 34799999999999999999997543 1122 136899999888776555433 33433321110 01112
Q ss_pred HHH---HHHHHHHHhc-C-CeEEEEEecC
Q 002704 244 IEQ---KALDIFRILR-G-KKFVVLLDDI 267 (890)
Q Consensus 244 ~~~---~~~~l~~~l~-~-~~~LlvlDdv 267 (890)
.++ ....+.+.+. . +.-+||+|-+
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 222 2333444442 3 5668888887
No 266
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.17 E-value=0.042 Score=55.42 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=32.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLR 220 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 220 (890)
.-.++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 35789999999999999999998776 22344678887655543
No 267
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.17 E-value=0.0057 Score=60.42 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=59.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHH---HHHHHhcCccccccccCHHHHHHHHHH
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQE---VIGEKIGLLNETWKSRRIEQKALDIFR 253 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (890)
.+|.|+|+.|.||||++..+.... .......++.- .+.. +.... .+..+-. ...+.......+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~--E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPI--EFVHESKRSLINQRE------VGLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCc--cccccCccceeeecc------cCCCccCHHHHHHH
Confidence 578999999999999999887766 22233333322 1111 10000 0111000 11122334556677
Q ss_pred HhcCCeEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHH
Q 002704 254 ILRGKKFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVC 300 (890)
Q Consensus 254 ~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~ 300 (890)
.++..+=++++|++.+......+.... . .|..++.|+....+.
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~a---~-~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTAA---E-TGHLVMSTLHTNSAA 112 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHHH---H-cCCEEEEEecCCcHH
Confidence 777777899999997665544332221 1 455577777765443
No 268
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.14 E-value=0.016 Score=60.93 Aligned_cols=86 Identities=20% Similarity=0.189 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCcccc---ccccCHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNET---WKSRRIEQKALDI 251 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 251 (890)
.-+++-|+|++|+||||||.++.... ...-..++|++..+.++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 44799999999999999999987765 2334567888777665542 35555543221 1223455555555
Q ss_pred HHHhc-CCeEEEEEecCC
Q 002704 252 FRILR-GKKFVVLLDDIW 268 (890)
Q Consensus 252 ~~~l~-~~~~LlvlDdv~ 268 (890)
...++ +..-+||+|-|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55453 456689999983
No 269
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.14 E-value=0.014 Score=55.99 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=63.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCC--CC---CCc--eEEEEEeCCCCCHHHHHHHHHHHhcCccc----cccccC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGS--PT---NFD--LVILVVVSKDLRLESIQEVIGEKIGLLNE----TWKSRR 243 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 243 (890)
.-.+++|+|+.|+|||||.+.+..+.-.+ .. .|. .+.|+ .+ .+.++.++.... ....-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999886321000 00 110 12232 11 345555554321 111112
Q ss_pred H-HHHHHHHHHHhcCC--eEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCHHHHhcccCCceeec
Q 002704 244 I-EQKALDIFRILRGK--KFVVLLDDIWQRVD---LTKVGVPLPSSQTSASKVVFTTRSEEVCGLMEAHKKFKV 311 (890)
Q Consensus 244 ~-~~~~~~l~~~l~~~--~~LlvlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 311 (890)
. +...-.+.+.+..+ +-++++|+.-..-+ ...+...+......|..||++|.+...... .+..+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2 22222344455556 77888898743222 222222222111146678888888776542 4455554
No 270
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.13 E-value=0.025 Score=53.84 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=30.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL 219 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 219 (890)
++.|+|.+|+||||+++.+.... ...-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 46899999999999999998876 2344567787776554
No 271
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.10 E-value=0.008 Score=71.12 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=37.9
Q ss_pred CcccchHHHHHHHHHHhcc---------CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCLVE---------EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++|.+..++.+.+.+.. .....+.++|++|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999888852 124578999999999999999998876
No 272
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.08 E-value=0.019 Score=55.77 Aligned_cols=127 Identities=18% Similarity=0.157 Sum_probs=63.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCc--ccc----------cccc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLL--NET----------WKSR 242 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~--~~~----------~~~~ 242 (890)
.-.+++|.|..|.|||||++.++.... .-...+++.-. ++......+...++.. ... ...-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK----PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 446899999999999999999987652 11222332211 1111111111111100 000 0111
Q ss_pred C-HHHHHHHHHHHhcCCeEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCHHHHhcccCCceeec
Q 002704 243 R-IEQKALDIFRILRGKKFVVLLDDIWQRVD---LTKVGVPLPSSQTSASKVVFTTRSEEVCGLMEAHKKFKV 311 (890)
Q Consensus 243 ~-~~~~~~~l~~~l~~~~~LlvlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 311 (890)
+ .+...-.+-+.+-.++-++++|+....-+ .+.+...+.... .+..||++|.+...... .++.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 12222334555667788999999754322 222222222222 35678888888776542 3444444
No 273
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.05 E-value=0.0034 Score=57.99 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 158 VGLQSQLEEVWRCLVE--EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 158 ~Gr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
||.-..++++.+.+.. ....-|.|+|..|+||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666777777777654 445678999999999999999998765
No 274
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.018 Score=56.25 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=45.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
.+.+|+|.|.+|.||||+|+.++..+ ...+- .-++. +++....-.....+......+.....+.+-+.+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~--~~I~~-D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKV--VVISL-DDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcc--eEeec-cccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 34689999999999999999999988 33321 11211 11111111112222222222222455677777888888
Q ss_pred hcCCe
Q 002704 255 LRGKK 259 (890)
Q Consensus 255 l~~~~ 259 (890)
+.+++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 275
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.00 E-value=0.042 Score=64.65 Aligned_cols=170 Identities=16% Similarity=0.119 Sum_probs=89.1
Q ss_pred cccchHHHHHHHHHH---hcc---------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHH
Q 002704 156 TMVGLQSQLEEVWRC---LVE---------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLES 223 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~---L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 223 (890)
.+.|.+...+++.+. +.+ .-.+-|.++|++|+|||++|+.+++.. ...| +.++.+ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------D 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------H
Confidence 345766655555443 322 113459999999999999999999876 2333 222221 1
Q ss_pred HHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc------------cc----ccccccCCCC-CCC
Q 002704 224 IQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV------------DL----TKVGVPLPSS-QTS 286 (890)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------------~~----~~~~~~l~~~-~~~ 286 (890)
+.. .. ...........+.......+.+|++||++... .. ..+...+... ...
T Consensus 221 ~~~----~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FVE----MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hHH----hh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 111 00 11112222233333334578899999985421 01 1111111111 113
Q ss_pred CcEEEEecCCHHHHhc--c---cCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCc
Q 002704 287 ASKVVFTTRSEEVCGL--M---EAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGL 352 (890)
Q Consensus 287 gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 352 (890)
+.-||.||...+..+. . .-+..+.+...+.++-.++++.+........+-+ ...+++.+.|.
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 4455667776654321 1 2356778888888888888888775543222222 23455666553
No 276
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.00 E-value=0.011 Score=56.37 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=61.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCC--CCHHHHHHHHHHHhcCccccccccCHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKD--LRLESIQEVIGEKIGLLNETWKSRRIEQKALDIF 252 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 252 (890)
.-.+++|+|..|.|||||.+.++... ......+++..... .+..+. ....++... +-...+...-.+-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHH
Confidence 34699999999999999999998765 22334444432111 111111 111111110 1112223333455
Q ss_pred HHhcCCeEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCHHHHh
Q 002704 253 RILRGKKFVVLLDDIWQRVD---LTKVGVPLPSSQTSASKVVFTTRSEEVCG 301 (890)
Q Consensus 253 ~~l~~~~~LlvlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 301 (890)
+.+-.++-++++|+.-..-+ ...+...+......|..||++|.+.....
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 56667788899999753322 22222222221114667888888876433
No 277
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.11 Score=59.66 Aligned_cols=152 Identities=17% Similarity=0.164 Sum_probs=86.4
Q ss_pred cccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHH
Q 002704 156 TMVGLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLE 222 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (890)
.+.|.+...+.+.+.+.- ...+.+.++|++|.|||.||+++++.. ...|-.+.+-
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~--------- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGS--------- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCH---------
Confidence 344566655555544411 345689999999999999999999965 4455433221
Q ss_pred HHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCccc-------------cccccccCCCCC-CCCc
Q 002704 223 SIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRVD-------------LTKVGVPLPSSQ-TSAS 288 (890)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-------------~~~~~~~l~~~~-~~gs 288 (890)
+ +... +.+.+.......+....+..+..|++|+++.... ..++...+.... ..+.
T Consensus 311 ~----l~sk-------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 E----LLSK-------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred H----Hhcc-------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 1 1110 1222233333334444467899999999853211 111222222111 1333
Q ss_pred EEEEecCCHHHHhc-----ccCCceeecCCCChhhHHHHHHHHhcCC
Q 002704 289 KVVFTTRSEEVCGL-----MEAHKKFKVQCLSGNDAWELFRQKVGEE 330 (890)
Q Consensus 289 ~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 330 (890)
.||-||-.....+. ..-...+.+.+-+.++..+.|..+....
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 34545554433221 1235678899999999999999988744
No 278
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.95 E-value=0.017 Score=59.76 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHH
Q 002704 159 GLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHI 196 (890)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v 196 (890)
+|..+..--+++|.++++..|.+.|.+|.|||-||-+.
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHH
Confidence 46667777788999999999999999999999888654
No 279
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.14 Score=54.51 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=37.6
Q ss_pred eEEEEEecCCCc--cccccccccCCCCCCCCcEEEEecCCHH-HHhc-ccCCceeecCCCChhhHHHHHHHH
Q 002704 259 KFVVLLDDIWQR--VDLTKVGVPLPSSQTSASKVVFTTRSEE-VCGL-MEAHKKFKVQCLSGNDAWELFRQK 326 (890)
Q Consensus 259 ~~LlvlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 326 (890)
+-++|+|++... .....+...+.... .+..+|++|.+.. +... ......+.+.+++.+++.+.+.+.
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 334456777532 12222222222222 3455777777654 3322 234568899999999999888654
No 280
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.93 E-value=0.031 Score=55.24 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCeEEEEEecCCCc---cccccccccCCCC-CCCCcEEEEecCCHHHHhcccCCceeec
Q 002704 245 EQKALDIFRILRGKKFVVLLDDIWQR---VDLTKVGVPLPSS-QTSASKVVFTTRSEEVCGLMEAHKKFKV 311 (890)
Q Consensus 245 ~~~~~~l~~~l~~~~~LlvlDdv~~~---~~~~~~~~~l~~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l 311 (890)
++..-.+.+.+...+-+|+.|+--.. ..-..+...+... ...|..||+.|.+..++... +++|.+
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 33334566777888889999985211 1111122222111 11578899999999998863 344443
No 281
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.93 E-value=0.019 Score=52.44 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=35.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCcc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLN 236 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 236 (890)
+|.|-|++|.||||+|+.+++++ .-.| .+...++++|++..+..-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----------eeccHHHHHHHHHcCCCH
Confidence 68999999999999999999987 1111 134578899999887654
No 282
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.92 E-value=0.009 Score=66.55 Aligned_cols=45 Identities=24% Similarity=0.397 Sum_probs=39.6
Q ss_pred cccchHHHHHHHHHHhc------cCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 156 TMVGLQSQLEEVWRCLV------EEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.++|.++.+++|++.|. +...+++.++|++|+||||||+.+++-+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 46899999999999982 3556899999999999999999999876
No 283
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.0009 Score=66.05 Aligned_cols=78 Identities=24% Similarity=0.256 Sum_probs=39.0
Q ss_pred cceEEEEccccccccccCCCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCc--cccCccCCCEEe
Q 002704 515 EKLRRLSLMENQIENLSEVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPS--GISKLVSLEHLD 592 (890)
Q Consensus 515 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~--~i~~L~~L~~L~ 592 (890)
.+++.|+++++.+.++.-..+++.|++|.|+-|.+..--| +..+++|+.|.|. -+.|..+-+ -+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLR-kN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLR-KNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHH-hcccccHHHHHHHhcCchhhhHh
Confidence 3444555555555555445555556666655554432211 4555555555555 333333322 234555566665
Q ss_pred ccCC
Q 002704 593 LSTS 596 (890)
Q Consensus 593 L~~~ 596 (890)
|..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 5544
No 284
>PRK09354 recA recombinase A; Provisional
Probab=95.92 E-value=0.025 Score=60.08 Aligned_cols=86 Identities=21% Similarity=0.196 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccc---cccCHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETW---KSRRIEQKALDI 251 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 251 (890)
.-+++-|+|++|+||||||.++.... +..-..++|++....++.. .+++++...+.. ...+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45789999999999999999987665 2344678899888777652 455555432211 223455555555
Q ss_pred HHHhc-CCeEEEEEecCC
Q 002704 252 FRILR-GKKFVVLLDDIW 268 (890)
Q Consensus 252 ~~~l~-~~~~LlvlDdv~ 268 (890)
...++ +..-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55553 456689999983
No 285
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.91 E-value=0.051 Score=60.07 Aligned_cols=89 Identities=20% Similarity=0.178 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCC-CCHHHHHHHHHHHhcCccccc-cccCHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKD-LRLESIQEVIGEKIGLLNETW-KSRRIEQKALDIF 252 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 252 (890)
...+|.++|.+|+||||.+..++..+. +..+ .+..|++... ....+.++.++++++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK--KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 457999999999999999999988772 2222 3444443321 123444556666665543111 1122233333333
Q ss_pred HHhcCCeEEEEEecC
Q 002704 253 RILRGKKFVVLLDDI 267 (890)
Q Consensus 253 ~~l~~~~~LlvlDdv 267 (890)
+.+.+. =+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 46777876
No 286
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.019 Score=64.40 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=83.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC--CHHHHHHHHHHHhcCccccccccCHHHHHHHHHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL--RLESIQEVIGEKIGLLNETWKSRRIEQKALDIFR 253 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (890)
..-|.|.|+.|+|||+||+++++.+. +.+.-++..|+++.-. ..+.+++.+-.. +.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v-------------------fse 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV-------------------FSE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHHH-------------------HHH
Confidence 45789999999999999999999983 6666777888776542 233333322221 223
Q ss_pred HhcCCeEEEEEecCCCc--------cccccc---cccCC------CCCCCCcEE--EEecCCHHHHh-----cccCCcee
Q 002704 254 ILRGKKFVVLLDDIWQR--------VDLTKV---GVPLP------SSQTSASKV--VFTTRSEEVCG-----LMEAHKKF 309 (890)
Q Consensus 254 ~l~~~~~LlvlDdv~~~--------~~~~~~---~~~l~------~~~~~gs~i--ivTtR~~~v~~-----~~~~~~~~ 309 (890)
.+...+-+|||||++.. .+|... ...+. ... .+.+| |-|.....-.. ..-...++
T Consensus 490 ~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~-~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLK-RNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHc-cCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 45567889999998521 112110 00000 111 34443 33333322111 11123456
Q ss_pred ecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCc
Q 002704 310 KVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGL 352 (890)
Q Consensus 310 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 352 (890)
++.++...+-.++++.........+ ..+...-+..+|+|.
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~~~~~~---~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIFSKNLSDI---TMDDLDFLSVKTEGY 608 (952)
T ss_pred ecCCcchhHHHHHHHHHHHhhhhhh---hhHHHHHHHHhcCCc
Confidence 7888888887777776554332111 112233377788775
No 287
>PRK06547 hypothetical protein; Provisional
Probab=95.89 E-value=0.012 Score=56.45 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=28.8
Q ss_pred HHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 166 EVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 166 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.+...+......+|+|.|++|+||||+|+.+.+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444556778899999999999999999998865
No 288
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.86 E-value=0.013 Score=61.73 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.....++|||++|.|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999987
No 289
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.84 E-value=0.038 Score=55.56 Aligned_cols=126 Identities=19% Similarity=0.136 Sum_probs=70.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCC-----CCCHHHHHHHHHHHhcCccccc-----cccCH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSK-----DLRLESIQEVIGEKIGLLNETW-----KSRRI 244 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~~-----~~~~~ 244 (890)
.-.+++++|.+|.||||+++.+..-. ..-...+++...+ .....+-..++++.++...+.. +-...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45799999999999999999998765 2222333333221 1123344556666666443211 11122
Q ss_pred HHHHHHHHHHhcCCeEEEEEecCCCcccc---ccccccCCCC-CCCCcEEEEecCCHHHHhccc
Q 002704 245 EQKALDIFRILRGKKFVVLLDDIWQRVDL---TKVGVPLPSS-QTSASKVVFTTRSEEVCGLME 304 (890)
Q Consensus 245 ~~~~~~l~~~l~~~~~LlvlDdv~~~~~~---~~~~~~l~~~-~~~gs~iivTtR~~~v~~~~~ 304 (890)
+...-.+.+.+.-++-++|.|+.-+..+. .++...+.+. ...|-..+..|-+-.++..+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 22223456677889999999986433221 2222111110 014666788888877766654
No 290
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.11 Score=52.19 Aligned_cols=170 Identities=18% Similarity=0.259 Sum_probs=90.8
Q ss_pred CcccchHHHHHHHHHHhc----------c--CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHH
Q 002704 155 PTMVGLQSQLEEVWRCLV----------E--EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLE 222 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (890)
+.+.|.+...+.+.++.. . ..-+-|.++|++|.||+.||++|+-.. ...| ++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTF-----FSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTF-----FSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCce-----EEeehH----
Confidence 346788888888887752 1 234689999999999999999999775 2222 233332
Q ss_pred HHHHHHHHHhcCccccccccCHHHHHHHHHHHh-cCCeEEEEEecCCCc------cc---cc----cccccC---CCCCC
Q 002704 223 SIQEVIGEKIGLLNETWKSRRIEQKALDIFRIL-RGKKFVVLLDDIWQR------VD---LT----KVGVPL---PSSQT 285 (890)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~------~~---~~----~~~~~l---~~~~~ 285 (890)
++. -+.++ ..+.+...|.+.. .+++-+|++|+|+.. .+ -. ++.... ..+.
T Consensus 201 DLv---SKWmG---------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~- 267 (439)
T KOG0739|consen 201 DLV---SKWMG---------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN- 267 (439)
T ss_pred HHH---HHHhc---------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC-
Confidence 111 11111 1344555566655 368899999998631 00 11 111111 1222
Q ss_pred CCcEEEEecCCHHHHhcc---cCCceeecCCCChhhHH-HHHHHHhcCCccCCCccHHHHHHHHHhHhCCch
Q 002704 286 SASKVVFTTRSEEVCGLM---EAHKKFKVQCLSGNDAW-ELFRQKVGEETLNCHPYILELAQTVTKECGGLP 353 (890)
Q Consensus 286 ~gs~iivTtR~~~v~~~~---~~~~~~~l~~L~~~~~~-~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (890)
.|.-|+=.|...=+.+.. .-.+.|-+ ||.+..|. .+|+-+++....... +.-.+++.++..|.-
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~LT---~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVLT---EQDFKELARKTEGYS 335 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCccccc---hhhHHHHHhhcCCCC
Confidence 444455566554333221 11223323 45555554 467666665432211 234556666666543
No 291
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.81 E-value=0.024 Score=54.68 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.-.+++|+|..|.|||||.+.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44699999999999999999998765
No 292
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.80 E-value=0.032 Score=53.91 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
++.++|++|+||||+++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 293
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.80 E-value=0.056 Score=57.18 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCC---CCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccc-------cccCH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGS---PTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETW-------KSRRI 244 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 244 (890)
.-.++-|+|++|+|||+|+.+++-..... ...-..++|++....++.+.+.+ +++.++...+.. ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 34688999999999999998876432100 11234789999999888888754 566665432110 11233
Q ss_pred HHHH---HHHHHHhc-CCeEEEEEecC
Q 002704 245 EQKA---LDIFRILR-GKKFVVLLDDI 267 (890)
Q Consensus 245 ~~~~---~~l~~~l~-~~~~LlvlDdv 267 (890)
++.. ..+...+. .+--|||+|.+
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 3333 23333332 34457888887
No 294
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.80 E-value=0.034 Score=57.18 Aligned_cols=91 Identities=22% Similarity=0.241 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc---CCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCcccc-------ccccCHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFL---GSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNET-------WKSRRIE 245 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~ 245 (890)
-.+.=|+|.+|+|||.|+.+++-... ...+.-..++|++....+....+. +|++..+...+. ....+.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 46889999999999999988865431 011223479999999999887775 466655432211 0112333
Q ss_pred HHHHHH---HHHh-cCCeEEEEEecC
Q 002704 246 QKALDI---FRIL-RGKKFVVLLDDI 267 (890)
Q Consensus 246 ~~~~~l---~~~l-~~~~~LlvlDdv 267 (890)
++...+ ...+ ..+-=|||+|.+
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHhhccccceEEEEecch
Confidence 333333 2333 234558888887
No 295
>PTZ00494 tuzin-like protein; Provisional
Probab=95.79 E-value=0.44 Score=51.21 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=96.6
Q ss_pred CCcccchHHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHH
Q 002704 154 EPTMVGLQSQLEEVWRCLVE---EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGE 230 (890)
Q Consensus 154 ~~~~~Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (890)
...+|.|+.+-..+.+.|.+ ...+++.+.|.-|.||++|.+...... + -..++|.+... ++-++.|.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-----~-~paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-----G-VALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-----C-CCeEEEEecCC---cchHHHHHH
Confidence 45678998887777777744 678999999999999999999877654 1 23577877766 456788999
Q ss_pred HhcCccccccccCHHHHHHHHH---HHhcCCeEEEEEecCCCcccccccc---ccCCCCCCCCcEEEEecCCHHHHh---
Q 002704 231 KIGLLNETWKSRRIEQKALDIF---RILRGKKFVVLLDDIWQRVDLTKVG---VPLPSSQTSASKVVFTTRSEEVCG--- 301 (890)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~---~~l~~~~~LlvlDdv~~~~~~~~~~---~~l~~~~~~gs~iivTtR~~~v~~--- 301 (890)
+++.+.-..-++-++-..+... ....++.-+||+-= .+-.++..+. ..+.... .-+.|++----+.+.-
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkL-REGssL~RVYnE~vaLacDr-RlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRL-REGSDLGRVYGEVVSLVSDC-QACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEe-ccCCcHHHHHHHHHHHHccc-hhheeeeechHhhhchhhc
Confidence 9987653222222222222222 23456666666621 1111221111 1111222 3455655333222211
Q ss_pred cccCCceeecCCCChhhHHHHHHHHh
Q 002704 302 LMEAHKKFKVQCLSGNDAWELFRQKV 327 (890)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~lf~~~~ 327 (890)
....-..|.+.+++.++|.+...+..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 11233578899999999999877654
No 296
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.011 Score=53.85 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.-|+|.|++|+||||+++.+.+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999887
No 297
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.78 E-value=0.023 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44699999999999999999998764
No 298
>PTZ00301 uridine kinase; Provisional
Probab=95.75 E-value=0.017 Score=57.14 Aligned_cols=25 Identities=32% Similarity=0.651 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..+|+|.|.+|.||||||+.+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4789999999999999999998776
No 299
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.74 E-value=0.03 Score=53.54 Aligned_cols=125 Identities=16% Similarity=0.155 Sum_probs=63.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCC--Cc---eEEEEEeCCCCC--HHHHHHHHHHHhcCccccccccCHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTN--FD---LVILVVVSKDLR--LESIQEVIGEKIGLLNETWKSRRIEQK 247 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~ 247 (890)
.-.+++|+|..|.|||||++.+........+. ++ .+.++ .+... ...+.+.+.-. ... .-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~--~~~---~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP--WDD---VLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc--CCC---CCCHHHHH
Confidence 44689999999999999999998765211111 11 12222 22221 11333333211 000 11122333
Q ss_pred HHHHHHHhcCCeEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCHHHHhcccCCceeec
Q 002704 248 ALDIFRILRGKKFVVLLDDIWQRVD---LTKVGVPLPSSQTSASKVVFTTRSEEVCGLMEAHKKFKV 311 (890)
Q Consensus 248 ~~~l~~~l~~~~~LlvlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 311 (890)
.-.+.+.+..++=++++|+--..-+ ...+...+... +..||++|.+..... ..++.+.+
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHHh--hCCEEEEE
Confidence 3344555667778889998643222 22222222221 356888888776543 24444444
No 300
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.74 E-value=0.034 Score=53.52 Aligned_cols=126 Identities=21% Similarity=0.179 Sum_probs=63.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCC--CCHHHHHHHHHHHhcC--ccccccc-------cC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKD--LRLESIQEVIGEKIGL--LNETWKS-------RR 243 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~--~~~~~~~-------~~ 243 (890)
.-.+++|+|..|.|||||.+.++.-.. .....+++.-... ...... ...++. +....-. -+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD----PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhC
Confidence 446999999999999999999987651 2223333221110 011111 111110 0000000 11
Q ss_pred -HHHHHHHHHHHhcCCeEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCHHHHhcccCCceeec
Q 002704 244 -IEQKALDIFRILRGKKFVVLLDDIWQRVD---LTKVGVPLPSSQTSASKVVFTTRSEEVCGLMEAHKKFKV 311 (890)
Q Consensus 244 -~~~~~~~l~~~l~~~~~LlvlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 311 (890)
.+...-.+.+.+..++=++++|+-...-+ ...+...+.... .+..||++|.+...... .++.+.+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11222234555667778999999754322 222222222222 34678888888776543 4444444
No 301
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.73 E-value=0.022 Score=55.43 Aligned_cols=122 Identities=21% Similarity=0.229 Sum_probs=64.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeC--CCCCHHHHHH------HHHHHhcCccc---cccccC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVS--KDLRLESIQE------VIGEKIGLLNE---TWKSRR 243 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s--~~~~~~~~~~------~i~~~l~~~~~---~~~~~~ 243 (890)
.-.+++|+|..|.|||||++.++... ......+++.-. ...+...... ++++.++.... ....-+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 44699999999999999999998765 122333333211 1112222211 14445444321 001112
Q ss_pred -HHHHHHHHHHHhcCCeEEEEEecCCCccc---cccccccCCCCCCC-CcEEEEecCCHHHH
Q 002704 244 -IEQKALDIFRILRGKKFVVLLDDIWQRVD---LTKVGVPLPSSQTS-ASKVVFTTRSEEVC 300 (890)
Q Consensus 244 -~~~~~~~l~~~l~~~~~LlvlDdv~~~~~---~~~~~~~l~~~~~~-gs~iivTtR~~~v~ 300 (890)
-+...-.+-+.+...+-++++|+.-..-+ ...+...+...... +..||++|.+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22223345556667888999999743322 22222222221112 66788888886654
No 302
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.033 Score=56.68 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=48.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc-CCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFL-GSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
.++|.++|++|.|||+|++++++++. +..+.+....-+.++.. .++.+-... .++-+..+.+++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE--------SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE--------SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh--------hhhHHHHHHHHHHHH
Confidence 47899999999999999999999873 12234444344433221 222211111 234455566666666
Q ss_pred hcCCe--EEEEEecCC
Q 002704 255 LRGKK--FVVLLDDIW 268 (890)
Q Consensus 255 l~~~~--~LlvlDdv~ 268 (890)
+..+. +.+.+|+|.
T Consensus 245 v~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVE 260 (423)
T ss_pred HhCCCcEEEEEeHHHH
Confidence 65544 445568884
No 303
>PHA00729 NTP-binding motif containing protein
Probab=95.71 E-value=0.013 Score=57.84 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=29.3
Q ss_pred HHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 165 EEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 165 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..+++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555666666789999999999999999998875
No 304
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.087 Score=59.65 Aligned_cols=173 Identities=15% Similarity=0.101 Sum_probs=92.4
Q ss_pred CcccchHHHHHHH---HHHhccC---------CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHH
Q 002704 155 PTMVGLQSQLEEV---WRCLVEE---------PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLE 222 (890)
Q Consensus 155 ~~~~Gr~~~~~~l---~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (890)
..+.|.|+.++++ ++.|.++ -.+-|..+|++|.|||.||++++... .+ .|- +.|...-
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V--PFf-----~iSGS~F-- 219 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV--PFF-----SISGSDF-- 219 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC--Cce-----eccchhh--
Confidence 4567887766554 5555542 24578999999999999999999876 22 221 1222110
Q ss_pred HHHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCc------------cccc----cccccCCCCCC-
Q 002704 223 SIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQR------------VDLT----KVGVPLPSSQT- 285 (890)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~------------~~~~----~~~~~l~~~~~- 285 (890)
.+.+ .+.......+...+..++-+++|++|.++.. +.++ ++.... ++.+
T Consensus 220 ------Vemf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEm-DGF~~ 285 (596)
T COG0465 220 ------VEMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM-DGFGG 285 (596)
T ss_pred ------hhhh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhh-ccCCC
Confidence 1111 1122223334444555667899999987531 1122 222111 2221
Q ss_pred -CCcEEEEecCCHHHHhc-----ccCCceeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhH
Q 002704 286 -SASKVVFTTRSEEVCGL-----MEAHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLA 355 (890)
Q Consensus 286 -~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPla 355 (890)
.|-.|+-.|-..+|.+. -.-+..+.++.-+-..-.++++-++........-++.. |++.+-|.--|
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfsGA 357 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFSGA 357 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCcccc
Confidence 23344444444444321 12345667777776777788876665544332222222 77777666544
No 305
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.61 E-value=0.026 Score=60.83 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=49.2
Q ss_pred CcccchHHHHHHHHHHhcc--------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCC---ceEEEEEeC-
Q 002704 155 PTMVGLQSQLEEVWRCLVE--------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNF---DLVILVVVS- 216 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s- 216 (890)
..++|.++.++.+.-++.. -..+.|.++|++|+|||++|+.++... ...| +...+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEVGY 88 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEeecceeecCCc
Confidence 4678999999888766642 123689999999999999999999887 3333 222222211
Q ss_pred CCCCHHHHHHHHHHHh
Q 002704 217 KDLRLESIQEVIGEKI 232 (890)
Q Consensus 217 ~~~~~~~~~~~i~~~l 232 (890)
...+.+.+.+.+....
T Consensus 89 vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 89 VGRDVESMVRDLTDAA 104 (441)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 1235666666665543
No 306
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.58 E-value=0.026 Score=54.45 Aligned_cols=120 Identities=19% Similarity=0.167 Sum_probs=60.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcC--ccc-cccc--------cC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGL--LNE-TWKS--------RR 243 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~~-~~~~--------~~ 243 (890)
.-.+++|+|..|.|||||++.++.... .....+++.-....... ..+...++. +.. .... -+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK----PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 446999999999999999999987641 22333333211100000 111111110 000 0000 11
Q ss_pred -HHHHHHHHHHHhcCCeEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCHHHHh
Q 002704 244 -IEQKALDIFRILRGKKFVVLLDDIWQRVD---LTKVGVPLPSSQTSASKVVFTTRSEEVCG 301 (890)
Q Consensus 244 -~~~~~~~l~~~l~~~~~LlvlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 301 (890)
.+...-.+.+.+..++=++++|+.-..-+ ...+...+......|..||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 12222345566777888999999744322 12222222221113567888888876544
No 307
>PRK07667 uridine kinase; Provisional
Probab=95.57 E-value=0.025 Score=55.65 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=29.5
Q ss_pred HHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 164 LEEVWRCLVE--EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 164 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.+.+.+.+.. +...+|+|.|.+|.||||+|+.+...+
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3556666643 445799999999999999999999877
No 308
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.57 E-value=0.084 Score=52.01 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=44.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhccCCCCCCc---eEEEEEeCCCCCHHHHHHHHHHHh--cCccccccccCHHHHHHHHH
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKFLGSPTNFD---LVILVVVSKDLRLESIQEVIGEKI--GLLNETWKSRRIEQKALDIF 252 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~s~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 252 (890)
||+|.|.+|+||||+|+.+...+. +.... ....+.............. .... ..........+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999998882 12222 2333322222221222111 1111 11111124566777777777
Q ss_pred HHhcCCeEEE
Q 002704 253 RILRGKKFVV 262 (890)
Q Consensus 253 ~~l~~~~~Ll 262 (890)
....++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 6666665433
No 309
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.56 E-value=0.02 Score=63.05 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++||++.++.+...+..+ ..|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 35789999999998888654 478999999999999999999876
No 310
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.50 E-value=0.034 Score=57.47 Aligned_cols=104 Identities=24% Similarity=0.306 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCcccc
Q 002704 159 GLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNET 238 (890)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 238 (890)
|...+..+.+..+......+|.|.|..|.||||+++.+.+.. ...-..++.+.-...+....+ .+...
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~~-----~q~~v---- 130 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPGI-----NQVQV---- 130 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCCc-----eEEEe----
Confidence 554444444444444455789999999999999999887665 111123333322222211110 01110
Q ss_pred ccccCHHHHHHHHHHHhcCCeEEEEEecCCCcccccc
Q 002704 239 WKSRRIEQKALDIFRILRGKKFVVLLDDIWQRVDLTK 275 (890)
Q Consensus 239 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~ 275 (890)
...........+...++..+=.|+++++.+......
T Consensus 131 -~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 131 -NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred -CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 111112355566777888888999999987665443
No 311
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.081 Score=60.23 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=60.3
Q ss_pred cccchHHHHHHHHHHhcc---------C---CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHH
Q 002704 156 TMVGLQSQLEEVWRCLVE---------E---PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLES 223 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 223 (890)
++=|.++-+.+|.+.+.- . ...-|.++|++|.|||-+|++|+-.. . .-|++|-.. +
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP----E 740 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP----E 740 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH----H
Confidence 455788889999888742 1 24578999999999999999999876 1 334455443 1
Q ss_pred HHHHHHHHhcCccccccccCHHHHHHHHHHHhcCCeEEEEEecCCC
Q 002704 224 IQEVIGEKIGLLNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQ 269 (890)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 269 (890)
+ +... .+.+++...+.+.+.-..+++.|++|++++
T Consensus 741 L----LNMY-------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 L----LNMY-------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred H----HHHH-------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1 1111 223344444444444456999999999864
No 312
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.49 E-value=0.063 Score=53.23 Aligned_cols=93 Identities=22% Similarity=0.297 Sum_probs=55.7
Q ss_pred HHHhcc-CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCccc----cccc
Q 002704 168 WRCLVE-EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNE----TWKS 241 (890)
Q Consensus 168 ~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~ 241 (890)
++.+.. ..-..++|.|.+|+|||+|+..+.+.. .-+.++++.+.+.. .+.++.+.+...-..... ...+
T Consensus 6 ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 6 IDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 444433 233689999999999999999999886 23344777777653 456666666443111110 0011
Q ss_pred cCHH----------HHHHHHHHHhcCCeEEEEEecC
Q 002704 242 RRIE----------QKALDIFRILRGKKFVVLLDDI 267 (890)
Q Consensus 242 ~~~~----------~~~~~l~~~l~~~~~LlvlDdv 267 (890)
.... ..+++++. +++.+|+++||+
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred hhHHHHhhhhccchhhhHHHhh--cCCceeehhhhh
Confidence 1111 11222222 689999999998
No 313
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.021 Score=54.84 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.|.|.|.+|.||||+|+.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 314
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.49 E-value=0.036 Score=60.05 Aligned_cols=83 Identities=23% Similarity=0.328 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccc---cccCHHHHHHHHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETW---KSRRIEQKALDIF 252 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 252 (890)
-.++.|.|.+|+|||||+.+++.... .....++|++..+. ..++. .-++.++...+.. ...+.+.....+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 46999999999999999999987762 22346778776443 33332 2234444332211 1223333333332
Q ss_pred HHhcCCeEEEEEecC
Q 002704 253 RILRGKKFVVLLDDI 267 (890)
Q Consensus 253 ~~l~~~~~LlvlDdv 267 (890)
..+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235668888887
No 315
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.49 E-value=0.069 Score=57.19 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=41.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCC----CCceEEEEEeCCCCCHHHHHHHHHHHhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPT----NFDLVILVVVSKDLRLESIQEVIGEKIG 233 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (890)
...++-|+|++|+|||+++.+++-... ... .-..++|++....++...+.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~-~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQ-LPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhc-cccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 357899999999999999999876541 111 114799999998888777654 344444
No 316
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.48 E-value=0.019 Score=58.36 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+...+|+|.|+.|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 557899999999999999999999876
No 317
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.019 Score=54.46 Aligned_cols=118 Identities=24% Similarity=0.240 Sum_probs=61.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHh
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRIL 255 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 255 (890)
-.+++|+|..|.|||||++.+.... ......+++........ ........++... +-...+...-.+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~---qlS~G~~~r~~l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKL--PLEELRRRIGYVP---QLSGGQRQRVALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccC--CHHHHHhceEEEe---eCCHHHHHHHHHHHHH
Confidence 3699999999999999999998765 12344444432211110 0011111111110 0111223333355556
Q ss_pred cCCeEEEEEecCCCccc---cccccccCCCCCCCCcEEEEecCCHHHHhc
Q 002704 256 RGKKFVVLLDDIWQRVD---LTKVGVPLPSSQTSASKVVFTTRSEEVCGL 302 (890)
Q Consensus 256 ~~~~~LlvlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~~~ 302 (890)
...+-++++|+.....+ ...+...+......+..+|++|.+......
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 66788999999853322 222222222111134678888888766554
No 318
>PRK10867 signal recognition particle protein; Provisional
Probab=95.47 E-value=0.056 Score=59.60 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
...+|.++|.+|+||||.+..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999888887766
No 319
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.46 E-value=0.037 Score=55.22 Aligned_cols=26 Identities=38% Similarity=0.397 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.-.+++|+|..|.|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44699999999999999999998754
No 320
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.45 E-value=0.0051 Score=36.07 Aligned_cols=17 Identities=47% Similarity=0.659 Sum_probs=8.1
Q ss_pred CCEEeccCCCccccchH
Q 002704 588 LEHLDLSTSLISEIPEE 604 (890)
Q Consensus 588 L~~L~L~~~~i~~lp~~ 604 (890)
|++|++++|+++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 321
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.056 Score=58.20 Aligned_cols=88 Identities=24% Similarity=0.302 Sum_probs=49.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCC-CCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKD-LRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
..++.++|+.|+||||++..++.... .+.....+..++.... ....+-++..++.++.+.. ...+..++...+ ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~~l-~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQLAL-AE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHHHHH-HH
Confidence 46999999999999999999988751 1111234555543221 2344455555666665432 122222333333 33
Q ss_pred hcCCeEEEEEecCC
Q 002704 255 LRGKKFVVLLDDIW 268 (890)
Q Consensus 255 l~~~~~LlvlDdv~ 268 (890)
+.++ =+|++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4455 455689873
No 322
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.44 E-value=0.038 Score=60.71 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=36.8
Q ss_pred CCcccchHHHHHHHHHHhcc-------C---------CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 154 EPTMVGLQSQLEEVWRCLVE-------E---------PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 154 ~~~~~Gr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
...++|.+..++.+..++.+ . ....|.++|++|+|||++|+.++...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999888655521 0 23569999999999999999999776
No 323
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.43 E-value=0.012 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.738 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHhhc
Q 002704 179 VGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~ 200 (890)
|+|.|.+|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998874
No 324
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.42 E-value=0.058 Score=57.58 Aligned_cols=60 Identities=20% Similarity=0.157 Sum_probs=42.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc-C--CCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFL-G--SPTNFDLVILVVVSKDLRLESIQEVIGEKIGLL 235 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~--~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 235 (890)
.-.++-|+|.+|+|||+|+.+++-... . ....-..++|++....|..+.+.+ +++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 446888999999999999998863320 0 011235789999999999888755 56666543
No 325
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.41 E-value=0.06 Score=59.33 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
...++.++|.+|+||||.|..++..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999998888765
No 326
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.39 E-value=0.032 Score=62.06 Aligned_cols=98 Identities=21% Similarity=0.230 Sum_probs=51.4
Q ss_pred HHHhcc-CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEE-EEEeCCCC-CHHHHHHHHHHHhcCc---cccccc
Q 002704 168 WRCLVE-EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVI-LVVVSKDL-RLESIQEVIGEKIGLL---NETWKS 241 (890)
Q Consensus 168 ~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~s~~~-~~~~~~~~i~~~l~~~---~~~~~~ 241 (890)
++++.. +.-....|+|++|+|||||++.|++... ..+-++.+ .+-+.+.+ .+.++.+.+-..+-.. ......
T Consensus 407 IDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 407 IDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 344433 3345789999999999999999998762 23334333 33444443 3444443331111000 000000
Q ss_pred cCHHHHHHHHHHHh--cCCeEEEEEecC
Q 002704 242 RRIEQKALDIFRIL--RGKKFVVLLDDI 267 (890)
Q Consensus 242 ~~~~~~~~~l~~~l--~~~~~LlvlDdv 267 (890)
.......-.+-+++ .++.+||++|++
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11112222233344 689999999998
No 327
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.39 E-value=0.012 Score=52.07 Aligned_cols=28 Identities=39% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHHhhccCCCCCCce
Q 002704 179 VGLYGMGGVGKTTLLTHINNKFLGSPTNFDL 209 (890)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 209 (890)
|.|+|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6899999999999999999987 566653
No 328
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.39 E-value=0.024 Score=58.79 Aligned_cols=88 Identities=25% Similarity=0.366 Sum_probs=49.0
Q ss_pred HHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCH
Q 002704 165 EEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRI 244 (890)
Q Consensus 165 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 244 (890)
..+++.+...+ +-|.++|+.|+|||++++....... ...| .+.-++.+..-+...+++.|-..+......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~--~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~------ 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLD--SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR------ 92 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCST--TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCC--cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC------
Confidence 44555555543 5679999999999999999887652 1222 234455555444444443322222110000
Q ss_pred HHHHHHHHHHhcCCeEEEEEecCC
Q 002704 245 EQKALDIFRILRGKKFVVLLDDIW 268 (890)
Q Consensus 245 ~~~~~~l~~~l~~~~~LlvlDdv~ 268 (890)
...--.+|+.++++||+.
T Consensus 93 ------~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 93 ------VYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp ------EEEEESSSEEEEEEETTT
T ss_pred ------CCCCCCCcEEEEEecccC
Confidence 000014688999999984
No 329
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.36 E-value=0.81 Score=50.34 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
...+|.++|..|+||||.+..++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999988766
No 330
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.35 E-value=0.1 Score=53.82 Aligned_cols=127 Identities=16% Similarity=0.067 Sum_probs=66.2
Q ss_pred HHHHHHh-ccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcC-ccccc---
Q 002704 165 EEVWRCL-VEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGL-LNETW--- 239 (890)
Q Consensus 165 ~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~~--- 239 (890)
+.++..+ ...+..-++|+|+.|.|||||.+.+..... .....+++.-.+-... +-..+++..... +....
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r 173 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIR 173 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecc-hhHHHHHHHhccccccccccc
Confidence 3334444 334557899999999999999999997762 2222333321111000 111233322211 11000
Q ss_pred -cccCHHHHHHHHHHHhc-CCeEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHH
Q 002704 240 -KSRRIEQKALDIFRILR-GKKFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVC 300 (890)
Q Consensus 240 -~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~ 300 (890)
+..+-......+...+. ..+=++++|++-....+..+...+ . .|..||+||.+..+.
T Consensus 174 ~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~-~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 174 TDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---H-AGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---h-CCCEEEEEechhHHH
Confidence 00011111222333333 578899999986655555554433 2 467899999976653
No 331
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.35 E-value=0.064 Score=56.14 Aligned_cols=88 Identities=24% Similarity=0.312 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCccccccccCHHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNETWKSRRIEQKALDIFR 253 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (890)
..++|+|+|++|+||||++..++..+. ....-..+..++..... ...+-+..-.+.++.+.. ...+..++...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHHH
Confidence 346999999999999999999887762 11111345555543321 122222333333443321 22334444444433
Q ss_pred HhcCCeEEEEEecC
Q 002704 254 ILRGKKFVVLLDDI 267 (890)
Q Consensus 254 ~l~~~~~LlvlDdv 267 (890)
+.+ .=+|++|..
T Consensus 270 -~~~-~d~vliDt~ 281 (282)
T TIGR03499 270 -LRD-KDLILIDTA 281 (282)
T ss_pred -ccC-CCEEEEeCC
Confidence 333 347777753
No 332
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.35 E-value=0.1 Score=53.27 Aligned_cols=49 Identities=16% Similarity=0.084 Sum_probs=35.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVI 228 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 228 (890)
.-.++.|.|.+|+|||++|.++.... -..-..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHH
Confidence 45799999999999999999876543 12345788888755 455555553
No 333
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.35 E-value=0.094 Score=55.72 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=40.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccC---CCCCCceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLG---SPTNFDLVILVVVSKDLRLESIQEVIGEKIGL 234 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (890)
...++.|+|.+|+|||||+..++..... ....-..++|++....+....+ ..+++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 4579999999999999999988753210 0112236799998888777764 445555544
No 334
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.34 E-value=0.014 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+|.|.|..|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 335
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.34 E-value=0.057 Score=51.07 Aligned_cols=117 Identities=21% Similarity=0.168 Sum_probs=60.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCC---CCCHHHHHHHHHH---HhcCccccccccC------
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSK---DLRLESIQEVIGE---KIGLLNETWKSRR------ 243 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~---~l~~~~~~~~~~~------ 243 (890)
...|-|++..|.||||.|..++-+. ..+--.+..+..-+ .......++...- +.+... .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra---~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~-~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA---LGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGF-TWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCC-eecCCCcHHHHH
Confidence 4688999999999999998887665 22222333333222 2233333333200 001100 011111
Q ss_pred -HHHHHHHHHHHhcCCe-EEEEEecCCC-----ccccccccccCCCCCCCCcEEEEecCCH
Q 002704 244 -IEQKALDIFRILRGKK-FVVLLDDIWQ-----RVDLTKVGVPLPSSQTSASKVVFTTRSE 297 (890)
Q Consensus 244 -~~~~~~~l~~~l~~~~-~LlvlDdv~~-----~~~~~~~~~~l~~~~~~gs~iivTtR~~ 297 (890)
..+.....++.+...+ =+||||++-. ..+.+++...+.... .+.-||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp-~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERP-GHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC-CCCEEEEECCCC
Confidence 1122233344454444 4999999842 233344444443333 667899999985
No 336
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.34 E-value=0.043 Score=59.89 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCccc----cccccCHHH---
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNE----TWKSRRIEQ--- 246 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~--- 246 (890)
.-..++|+|..|+|||||++.+.... ..+.++.+-+.+.. .+.++.+.++..-+.... ...+.+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 44689999999999999999998653 22456666666554 345555555443221110 001111111
Q ss_pred ---HHHHHHHHh--cCCeEEEEEecC
Q 002704 247 ---KALDIFRIL--RGKKFVVLLDDI 267 (890)
Q Consensus 247 ---~~~~l~~~l--~~~~~LlvlDdv 267 (890)
.+-.+-+++ +++++|+++||+
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 111223333 589999999998
No 337
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.39 Score=54.46 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=79.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILR 256 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (890)
.-|.++|++|.|||-||.+++... . .-+++|-.. +++.+ .+ +.+++.....+.+.-.
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~-----~---~~fisvKGP----ElL~K---yI--------GaSEq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNS-----N---LRFISVKGP----ELLSK---YI--------GASEQNVRDLFERAQS 758 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhC-----C---eeEEEecCH----HHHHH---Hh--------cccHHHHHHHHHHhhc
Confidence 468999999999999999998765 1 234455443 22211 11 2334444444444556
Q ss_pred CCeEEEEEecCCCcc-------------ccccccccCCCCCC-CCcEEEE-ecCCHHHHh--ccc---CCceeecCCCCh
Q 002704 257 GKKFVVLLDDIWQRV-------------DLTKVGVPLPSSQT-SASKVVF-TTRSEEVCG--LME---AHKKFKVQCLSG 316 (890)
Q Consensus 257 ~~~~LlvlDdv~~~~-------------~~~~~~~~l~~~~~-~gs~iiv-TtR~~~v~~--~~~---~~~~~~l~~L~~ 316 (890)
.+++++++|+.++.. ...++...+....+ .|--|+- |||- ++.+ .+. -++.+.-+.-++
T Consensus 759 a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRp-dliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 759 AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRP-DLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCc-cccCHhhcCCCccceeeeCCCCCc
Confidence 799999999986421 11222222222111 4545554 4553 3311 111 223333344456
Q ss_pred hhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhH
Q 002704 317 NDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLA 355 (890)
Q Consensus 317 ~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPla 355 (890)
.+-.++|...........+- -.+.++.++.|..-|
T Consensus 838 ~eRl~il~~ls~s~~~~~~v----dl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 838 PERLEILQVLSNSLLKDTDV----DLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHHHhhccCCcccc----chHHHhhhcCCCchh
Confidence 66777777665433222222 244566677766543
No 338
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.31 E-value=0.04 Score=59.47 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=50.6
Q ss_pred CCcccchHHHHHHHHHHhcc--------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCC---ceEEEEEe-
Q 002704 154 EPTMVGLQSQLEEVWRCLVE--------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNF---DLVILVVV- 215 (890)
Q Consensus 154 ~~~~~Gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~- 215 (890)
...++|.+..++.+..++.. -..+.|.++|++|+|||++|+.+.... ...| +...|...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD~t~f~e~G 90 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEVG 90 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh---CChheeecchhhccCC
Confidence 35688999999999877732 013689999999999999999999886 2332 22222221
Q ss_pred CCCCCHHHHHHHHHHHh
Q 002704 216 SKDLRLESIQEVIGEKI 232 (890)
Q Consensus 216 s~~~~~~~~~~~i~~~l 232 (890)
....+.+.+.+.+....
T Consensus 91 yvG~d~e~~ir~L~~~A 107 (443)
T PRK05201 91 YVGRDVESIIRDLVEIA 107 (443)
T ss_pred cccCCHHHHHHHHHHHH
Confidence 11235566666666544
No 339
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.017 Score=54.86 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+.|.+.|.+|+||||+|+++++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467889999999999999999887
No 340
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.26 E-value=0.081 Score=53.95 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCcccc----------------
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNET---------------- 238 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------------- 238 (890)
.-.++.|+|.+|+|||+++.++.... ...-..++|++..+. ..++.+.+ ++++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45799999999999999999986553 123457888888654 45555554 233321110
Q ss_pred --ccccCHHHHHHHHHHHhcC-CeEEEEEecCC
Q 002704 239 --WKSRRIEQKALDIFRILRG-KKFVVLLDDIW 268 (890)
Q Consensus 239 --~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 268 (890)
......+.....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335556666666643 55578889863
No 341
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.24 E-value=0.071 Score=47.12 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHHHhcc-------CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 156 TMVGLQSQLEEVWRCLVE-------EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.++|..-..+.+++++.+ ...-|++.+|++|+|||.+++.+++.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 467877777777766632 345689999999999999999988874
No 342
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.097 Score=56.04 Aligned_cols=87 Identities=21% Similarity=0.205 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCH--HHHHHHHHHHhcCccccccccCHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRL--ESIQEVIGEKIGLLNETWKSRRIEQKALDIF 252 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 252 (890)
..++|+++|++|+||||++..++..+. ... ..+..++.. .+.+ .+-+...++.++.+.. ...+...+.+.+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~G-kkVglI~aD-t~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKK-KTVGFITTD-HSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcC-CcEEEEecC-CcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHH
Confidence 347999999999999999999987762 222 234445443 2322 2223333334443321 2334555555444
Q ss_pred HHhcC-CeEEEEEecC
Q 002704 253 RILRG-KKFVVLLDDI 267 (890)
Q Consensus 253 ~~l~~-~~~LlvlDdv 267 (890)
..-.. +.=+|++|-.
T Consensus 314 ~lk~~~~~DvVLIDTa 329 (436)
T PRK11889 314 YFKEEARVDYILIDTA 329 (436)
T ss_pred HHHhccCCCEEEEeCc
Confidence 33221 2346777876
No 343
>PRK08233 hypothetical protein; Provisional
Probab=95.23 E-value=0.016 Score=56.44 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..+|+|.|.+|+||||+|+.++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 344
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.23 E-value=0.017 Score=57.74 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
....+|+|.|.+|+|||||++.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 345
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.21 E-value=0.081 Score=51.09 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCeEEEEEecCCCccccc---cccccCCCCCCCCcEEEEecCCHHHHhc
Q 002704 248 ALDIFRILRGKKFVVLLDDIWQRVDLT---KVGVPLPSSQTSASKVVFTTRSEEVCGL 302 (890)
Q Consensus 248 ~~~l~~~l~~~~~LlvlDdv~~~~~~~---~~~~~l~~~~~~gs~iivTtR~~~v~~~ 302 (890)
.-.|.+.|.-++=++.+|+.-+.-+-+ ++..........|-.+|+.|.....|..
T Consensus 144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFARE 201 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHH
Confidence 334566777778899999986533222 2222222212267778888888766654
No 346
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.21 E-value=0.034 Score=50.23 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 162 SQLEEVWRCLVE--EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 162 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
++.+++.+.|.. ....+|.+.|.-|.||||+++.+++.+
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344444444433 234699999999999999999999886
No 347
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.19 E-value=0.038 Score=51.38 Aligned_cols=104 Identities=21% Similarity=0.294 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
.-.+++|+|..|.|||||++.+..... .....+++.... .++... +-...+...-.+-+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~~-------------~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGSTV-------------KIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCeE-------------EEEEEc---cCCHHHHHHHHHHHH
Confidence 446999999999999999999987651 223334432100 000000 001112223334555
Q ss_pred hcCCeEEEEEecCCCcc---ccccccccCCCCCCCCcEEEEecCCHHHHh
Q 002704 255 LRGKKFVVLLDDIWQRV---DLTKVGVPLPSSQTSASKVVFTTRSEEVCG 301 (890)
Q Consensus 255 l~~~~~LlvlDdv~~~~---~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 301 (890)
+..++-++++|+.-..- ....+...+... +..||++|.+.....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHH
Confidence 66677889999974322 222232222221 246888888766543
No 348
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.18 E-value=0.017 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999999776
No 349
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.49 Score=46.66 Aligned_cols=52 Identities=35% Similarity=0.506 Sum_probs=40.1
Q ss_pred cccCCC--CcccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 149 DERPTE--PTMVGLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 149 ~~~~~~--~~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+..|++ +.+=|-+++++++++++.- ...+-|..+|++|.|||-+|++.+..-
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 444444 3466899999999998731 245678999999999999999988654
No 350
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.17 E-value=0.057 Score=49.04 Aligned_cols=102 Identities=20% Similarity=0.314 Sum_probs=40.7
Q ss_pred CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccCc-cccCccCCCEEeccCCCccccch-HHhcCCc
Q 002704 533 VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPS-GISKLVSLEHLDLSTSLISEIPE-ELKALVN 610 (890)
Q Consensus 533 ~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~l~~l~~ 610 (890)
+.++++|+.+.+.. . ...++...|..+++|+.+.+. .+ +..++. .+.++.+|+.+.+.. .+..++. .+..+++
T Consensus 8 F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~-~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFP-NN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEES-ST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-C-eeEeChhhccccccccccccc-cc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 44555555555542 2 234444445555556666655 22 333332 344555566666644 3333332 3344556
Q ss_pred CCEeeccCCCCccccChhhhcCCccCcEeecc
Q 002704 611 LKCLNLENTGLLLKIPLQLISHFSRLHVLRMF 642 (890)
Q Consensus 611 L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~ 642 (890)
|+.+++..+ +..++...+.++ +|+.+.+.
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 666666443 344444445554 56665554
No 351
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.15 E-value=0.12 Score=53.86 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 355799999999999999998876655
No 352
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.14 E-value=0.083 Score=53.16 Aligned_cols=122 Identities=20% Similarity=0.175 Sum_probs=67.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCC----------CC---ceEEEEEeCCCC------CH---------------
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPT----------NF---DLVILVVVSKDL------RL--------------- 221 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------~f---~~~~wv~~s~~~------~~--------------- 221 (890)
-.+++|+|+.|.|||||.+.+..-....++ .+ ..+.||.-...+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 379999999999999999999764311110 01 245555421111 11
Q ss_pred -------HHHHHHHHHHhcCccc---cccccCHHHHH-HHHHHHhcCCeEEEEEecCCCc------cccccccccCCCCC
Q 002704 222 -------ESIQEVIGEKIGLLNE---TWKSRRIEQKA-LDIFRILRGKKFVVLLDDIWQR------VDLTKVGVPLPSSQ 284 (890)
Q Consensus 222 -------~~~~~~i~~~l~~~~~---~~~~~~~~~~~-~~l~~~l~~~~~LlvlDdv~~~------~~~~~~~~~l~~~~ 284 (890)
.+...+.++.++...- ....-+-.+.+ -.+.+.|.+++=|++||+--.. ..+.++...+..
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-- 187 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-- 187 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--
Confidence 1334444444443321 11222333333 3456778899999999985322 222233332222
Q ss_pred CCCcEEEEecCCHHHH
Q 002704 285 TSASKVVFTTRSEEVC 300 (890)
Q Consensus 285 ~~gs~iivTtR~~~v~ 300 (890)
.|..|+++|-+-...
T Consensus 188 -eg~tIl~vtHDL~~v 202 (254)
T COG1121 188 -EGKTVLMVTHDLGLV 202 (254)
T ss_pred -CCCEEEEEeCCcHHh
Confidence 478899999986543
No 353
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.13 E-value=0.081 Score=50.85 Aligned_cols=118 Identities=22% Similarity=0.197 Sum_probs=62.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC---CHHHHHHHHH--HH--hcCccccccccC----
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL---RLESIQEVIG--EK--IGLLNETWKSRR---- 243 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~---~~~~~~~~i~--~~--l~~~~~~~~~~~---- 243 (890)
....|.|+|..|-||||.|..++-+. ..+--.+..+..-+.. .....+..+- .. .+.. -.+...+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra---~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~-~~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA---VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTG-FTWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCC-CcccCCCcHHH
Confidence 44789999999999999998877665 2232334444444332 3333333210 00 0110 0011111
Q ss_pred ---HHHHHHHHHHHhcCC-eEEEEEecCCC-----ccccccccccCCCCCCCCcEEEEecCCH
Q 002704 244 ---IEQKALDIFRILRGK-KFVVLLDDIWQ-----RVDLTKVGVPLPSSQTSASKVVFTTRSE 297 (890)
Q Consensus 244 ---~~~~~~~l~~~l~~~-~~LlvlDdv~~-----~~~~~~~~~~l~~~~~~gs~iivTtR~~ 297 (890)
..+.....++.+... -=+||||++-. ..+.+++...+.... .+.-||+|-|+.
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp-~~~evVlTGR~~ 158 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARP-GMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC-CCCEEEEECCCC
Confidence 111223334445444 45999999842 233444444443333 667899999985
No 354
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.13 E-value=0.044 Score=54.29 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhh
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNK 199 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~ 199 (890)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4469999999999999999999875
No 355
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.10 E-value=0.046 Score=50.57 Aligned_cols=42 Identities=33% Similarity=0.318 Sum_probs=31.1
Q ss_pred EEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHH
Q 002704 179 VGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQE 226 (890)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 226 (890)
|.++|++|+|||+||+.+++.. .. ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEecccccccccee
Confidence 6799999999999999999886 22 234467777777666543
No 356
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.07 E-value=0.029 Score=54.40 Aligned_cols=26 Identities=42% Similarity=0.471 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44699999999999999999998654
No 357
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.07 E-value=0.24 Score=52.96 Aligned_cols=88 Identities=17% Similarity=0.114 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCccccccccCHHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNETWKSRRIEQKALDIFR 253 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (890)
+.+++.++|+.|+||||++..++.... .+ -..+.+++..... ...+-++..++.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 457999999999999999999887652 12 2346666654332 223444555555554321 23445555544433
Q ss_pred Hh-cCCeEEEEEecC
Q 002704 254 IL-RGKKFVVLLDDI 267 (890)
Q Consensus 254 ~l-~~~~~LlvlDdv 267 (890)
.- .+..=+|++|-.
T Consensus 280 l~~~~~~D~VLIDTA 294 (407)
T PRK12726 280 MTYVNCVDHILIDTV 294 (407)
T ss_pred HHhcCCCCEEEEECC
Confidence 32 133457777876
No 358
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.05 E-value=0.015 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHhhc
Q 002704 179 VGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~ 200 (890)
|.|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988776
No 359
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.02 E-value=0.13 Score=52.38 Aligned_cols=47 Identities=34% Similarity=0.294 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQE 226 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 226 (890)
.-..+.|.|.+|+||||++.++..... ..-..++|++.... .+++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~--~~~i~~ 65 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES--RESIIR 65 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC--HHHHHH
Confidence 447999999999999999998765541 22356788876443 344433
No 360
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.02 E-value=0.12 Score=56.11 Aligned_cols=88 Identities=18% Similarity=0.241 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCC-CCCceEEEEEeCCCCCH--HHHHHHHHHHhcCccccccccCHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSP-TNFDLVILVVVSKDLRL--ESIQEVIGEKIGLLNETWKSRRIEQKALDI 251 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 251 (890)
..++|.++|+.|+||||.+..++..+.... ..-..+..+++. .+.. ..-++..++.++.+.. .....++....+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L 249 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEI 249 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHH
Confidence 347999999999999999999887762111 122344555544 3332 2235555565655431 233445554444
Q ss_pred HHHhcCCeEEEEEecC
Q 002704 252 FRILRGKKFVVLLDDI 267 (890)
Q Consensus 252 ~~~l~~~~~LlvlDdv 267 (890)
.+. .+.=+|++|.+
T Consensus 250 ~~~--~~~DlVLIDTa 263 (388)
T PRK12723 250 TQS--KDFDLVLVDTI 263 (388)
T ss_pred HHh--CCCCEEEEcCC
Confidence 433 34568888987
No 361
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.01 E-value=0.87 Score=47.82 Aligned_cols=167 Identities=13% Similarity=0.058 Sum_probs=90.4
Q ss_pred HHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhccC-------CCCCCceEEEEEe-CCCCCHHHHHHHHHHHhcC
Q 002704 164 LEEVWRCLVEEPV-GIVGLYGMGGVGKTTLLTHINNKFLG-------SPTNFDLVILVVV-SKDLRLESIQEVIGEKIGL 234 (890)
Q Consensus 164 ~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~ 234 (890)
++.+...+..+.. .+..++|..|.||+++|+.+.+.... ...+-+...++.. .....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 3444555555544 56669999999999999999877511 0111112333321 1112222222 22222211
Q ss_pred ccccccccCHHHHHHHHHHHhcCCeEEEEEecCCCcc--ccccccccCCCCCCCCcEEEEecCC-HHHHh-cccCCceee
Q 002704 235 LNETWKSRRIEQKALDIFRILRGKKFVVLLDDIWQRV--DLTKVGVPLPSSQTSASKVVFTTRS-EEVCG-LMEAHKKFK 310 (890)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~-~~v~~-~~~~~~~~~ 310 (890)
.. .-.+.+=++|+||+.... ....+...+.... .++.+|++|.+ ..+.. ..+....++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp-~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPP-KDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCC-CCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 10 011466788888885432 2333444444433 56666665544 44433 234567899
Q ss_pred cCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHHHH
Q 002704 311 VQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALIT 358 (890)
Q Consensus 311 l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 358 (890)
+.++++++..+.+... + .+ ++.++.++...+|.--|+..
T Consensus 146 f~~l~~~~l~~~l~~~-~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-N-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHc-C-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 9999999998887654 1 11 14566677777763344444
No 362
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.99 E-value=0.082 Score=58.06 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccc---cccccCHH------
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNE---TWKSRRIE------ 245 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~------ 245 (890)
.-..++|+|..|+|||||++.+.... .....+++....+..++.++............- ...+.+..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 34589999999999999999887653 222345554433444555554444333211000 00111111
Q ss_pred HHHHHHHHHh--cCCeEEEEEecC
Q 002704 246 QKALDIFRIL--RGKKFVVLLDDI 267 (890)
Q Consensus 246 ~~~~~l~~~l--~~~~~LlvlDdv 267 (890)
...-.+-+++ +++.+|+++||+
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1111222333 589999999998
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.98 E-value=0.23 Score=56.44 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=71.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCC-----CCceEEEEEeCCC---------------C-C-HHHHHHHHHHHh
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPT-----NFDLVILVVVSKD---------------L-R-LESIQEVIGEKI 232 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~~s~~---------------~-~-~~~~~~~i~~~l 232 (890)
.-..|+|+|+.|+|||||.+.+........+ .--.+.++.-... + . ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 4468999999999999999999665421111 1112233321110 0 0 123344444444
Q ss_pred cCccccc----cccCHHHHH-HHHHHHhcCCeEEEEEecCCCccccc---cccccCCCCCCCCcEEEEecCCHHHHhccc
Q 002704 233 GLLNETW----KSRRIEQKA-LDIFRILRGKKFVVLLDDIWQRVDLT---KVGVPLPSSQTSASKVVFTTRSEEVCGLME 304 (890)
Q Consensus 233 ~~~~~~~----~~~~~~~~~-~~l~~~l~~~~~LlvlDdv~~~~~~~---~~~~~l~~~~~~gs~iivTtR~~~v~~~~~ 304 (890)
+...+.. ..-+..+.. -.+...+-.++=++|||+--+.-+.+ .+...+.+. .| .||+.|.++.......
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~G-tvl~VSHDr~Fl~~va 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EG-TVLLVSHDRYFLDRVA 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CC-eEEEEeCCHHHHHhhc
Confidence 4433211 112222322 33445566788899999875543333 333333332 34 4888888887766643
Q ss_pred CCceeecCC
Q 002704 305 AHKKFKVQC 313 (890)
Q Consensus 305 ~~~~~~l~~ 313 (890)
.+++.+++
T Consensus 504 -~~i~~~~~ 511 (530)
T COG0488 504 -TRIWLVED 511 (530)
T ss_pred -ceEEEEcC
Confidence 44555543
No 364
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.98 E-value=0.045 Score=63.37 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=57.8
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGL 234 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (890)
..++|.+..++.+...+... +.+.++|.+|+||||+|+.+.+.+. ...++..+|..-+ ..+...+++.++.+++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np-~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNP-EDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCC-CcchHHHHHHHHHhcCH
Confidence 45789999888888777665 4799999999999999999998762 3456788886653 34677778888776654
No 365
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.97 E-value=0.11 Score=53.18 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccC-CCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCccc-----cccccCHHH-
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLG-SPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNE-----TWKSRRIEQ- 246 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~- 246 (890)
.-..++|.|..|+|||+|+..+.+...- .+..-+.++++-+.+.. ...++.+.+.+.-..... .........
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3457899999999999999998876510 12235778888887765 466666666554221110 001111111
Q ss_pred ----HHHHHHHHh---cCCeEEEEEecCC
Q 002704 247 ----KALDIFRIL---RGKKFVVLLDDIW 268 (890)
Q Consensus 247 ----~~~~l~~~l---~~~~~LlvlDdv~ 268 (890)
..-.+-+++ .++++|+++||+-
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 112233444 3789999999983
No 366
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.097 Score=55.51 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccc---cccCHHHHHHHHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETW---KSRRIEQKALDIF 252 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 252 (890)
-.+|.|=|-+|||||||.-+++.++. ..- .+.+|+.-+. ..++ +--++.++...+.. ...+.++..+.+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 36899999999999999999999883 222 6777765443 3332 33445555433211 2334444444443
Q ss_pred HHhcCCeEEEEEecC
Q 002704 253 RILRGKKFVVLLDDI 267 (890)
Q Consensus 253 ~~l~~~~~LlvlDdv 267 (890)
+ .++-++|+|-+
T Consensus 166 ~---~~p~lvVIDSI 177 (456)
T COG1066 166 Q---EKPDLVVIDSI 177 (456)
T ss_pred h---cCCCEEEEecc
Confidence 3 68889999998
No 367
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.96 E-value=0.022 Score=56.86 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
...+|+|+|++|+|||||++.+...+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 368
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.96 E-value=0.1 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+|+|.|.+|+||||+|+.+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999877
No 369
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.94 E-value=0.12 Score=48.82 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
-.++.|.|++|+|||||++.+.++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999764
No 370
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.92 E-value=0.026 Score=52.46 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=27.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEE
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVV 214 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 214 (890)
.+|.|.|.+|.||||||+.+.+.+ ...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 589999999999999999999988 23334455553
No 371
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.91 E-value=0.094 Score=51.34 Aligned_cols=45 Identities=24% Similarity=0.158 Sum_probs=31.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHH
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEV 227 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 227 (890)
++.|.|++|+|||+++.++..... ..-..++|++.... .+++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC--HHHHHHH
Confidence 367999999999999999877652 22345778876543 4454443
No 372
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.91 E-value=0.12 Score=54.94 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHhhc
Q 002704 179 VGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+.+.|++|.||||+++.+.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999877
No 373
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.90 E-value=0.023 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+.++|.|+|++|+||||+|+.+.+.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 374
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.89 E-value=0.12 Score=53.05 Aligned_cols=89 Identities=18% Similarity=0.117 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHH---HHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIE---QKALDI 251 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~~l 251 (890)
.-+++=|+|+.|.||||+|.+++-.. +..-..++|++.-+.++++.+..--...+..-. .....+.+ +.+..+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~-v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLL-VSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhccee-EecCCCHHHHHHHHHHH
Confidence 45788999999999999999987665 445558999999999987765433322121110 01222333 333344
Q ss_pred HHHhcCCeEEEEEecC
Q 002704 252 FRILRGKKFVVLLDDI 267 (890)
Q Consensus 252 ~~~l~~~~~LlvlDdv 267 (890)
......+--|+|+|-|
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4444444669999987
No 375
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.87 E-value=0.6 Score=49.58 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=34.5
Q ss_pred eeecCCCChhhHHHHHHHHhcCCccCCCccHHHHHHHHHhHhCCchhHH
Q 002704 308 KFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLAL 356 (890)
Q Consensus 308 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 356 (890)
++++++++.+|+..++.-.....-......-+...+++.--.+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887654432221222356777777779999643
No 376
>PRK03839 putative kinase; Provisional
Probab=94.87 E-value=0.022 Score=55.45 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.|.|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 377
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.86 E-value=0.033 Score=54.27 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 378
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.087 Score=62.34 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=65.9
Q ss_pred CcccchHHHHHHHHHHhcc------C--CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHH
Q 002704 155 PTMVGLQSQLEEVWRCLVE------E--PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQE 226 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 226 (890)
..++|.++.+..|.+++.. + ....+.+.|+.|+|||-||++++.-+ -+..+..+-++.+.- ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~------~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEF------QE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhh------hh
Confidence 4568999999999988854 2 34578889999999999999999877 455555565544432 22
Q ss_pred HHHHHhcCccccccccCHHHHHHHHHHHhcCCeE-EEEEecCCC
Q 002704 227 VIGEKIGLLNETWKSRRIEQKALDIFRILRGKKF-VVLLDDIWQ 269 (890)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~ 269 (890)
+.+..+.+. +.-..+...+|.+.++.++| +|+||||..
T Consensus 633 -vskligsp~----gyvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 633 -VSKLIGSPP----GYVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred -hhhccCCCc----ccccchhHHHHHHHHhcCCceEEEEechhh
Confidence 333333321 11122233466777888887 555699953
No 379
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.84 E-value=0.12 Score=56.35 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhh
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNK 199 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~ 199 (890)
-.+++|+|++|.||||||+.+.--
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcc
Confidence 368999999999999999998543
No 380
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.83 E-value=0.14 Score=54.65 Aligned_cols=59 Identities=20% Similarity=0.243 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCC---CCCCceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGS---PTNFDLVILVVVSKDLRLESIQEVIGEKIGL 234 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (890)
.-.++-|+|.+|+||||++.+++-..... ...-..++||+....++.+.+.+ +++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 35788999999999999999997664110 00113799999998888776554 4444443
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.81 E-value=0.14 Score=53.11 Aligned_cols=39 Identities=28% Similarity=0.410 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVS 216 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 216 (890)
..++|.++|++|+||||.+..++..+. ..-..+.+++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCC
Confidence 457999999999999999999987762 222345556543
No 382
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.81 E-value=0.18 Score=51.12 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVI 228 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 228 (890)
...++.|.|.+|+||||+|.++..... +.. ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 346999999999999999876655441 122 4566666333 456666665
No 383
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.80 E-value=0.028 Score=56.56 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.|.|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999876
No 384
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.79 E-value=0.11 Score=51.10 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=32.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCC-------CceEEEEEeCCCCCHHHHHHHHH
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTN-------FDLVILVVVSKDLRLESIQEVIG 229 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~~s~~~~~~~~~~~i~ 229 (890)
.++.|.|++|+||||++.++.......... -..++|++.... ...+.+.+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 589999999999999999988776321111 136788876665 334444443
No 385
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.0027 Score=60.12 Aligned_cols=65 Identities=25% Similarity=0.438 Sum_probs=36.0
Q ss_pred cccccCccEEEeecCCCcceEEecccCccccccCCcccEEEEecCCCCCC--CCcccccCCCCeEEEecCc
Q 002704 720 LANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVNFCSKLKD--LTLLVLIPNLKYIAVTDCK 788 (890)
Q Consensus 720 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~ 788 (890)
+..+++|+.|.+.+|..+.+...+..+ ...++|+.|+|++|+.+++ +.++..+++|+.|.|.+-+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 444566666666666555443333222 1356666666666666665 3455566666666665533
No 386
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.76 E-value=0.16 Score=53.41 Aligned_cols=88 Identities=22% Similarity=0.214 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccc---cccCHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETW---KSRRIEQKALDI 251 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 251 (890)
.-+++-|+|+.|+||||||.++.... +..-..++|+.....++.. .+++++...+.. ...+.++.....
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 34699999999999999999988776 3345678999988776653 344455433221 233455555555
Q ss_pred HHHhcC-CeEEEEEecCCCc
Q 002704 252 FRILRG-KKFVVLLDDIWQR 270 (890)
Q Consensus 252 ~~~l~~-~~~LlvlDdv~~~ 270 (890)
.+.++. .--++|+|-|-..
T Consensus 124 e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-
T ss_pred HHHhhcccccEEEEecCccc
Confidence 555543 4458899998543
No 387
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.74 E-value=0.11 Score=53.65 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=28.8
Q ss_pred HHHHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 167 VWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 167 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..+++.+.+..+|.|.|.+|.|||||+..+.+.+
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555778999999999999999999999886
No 388
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.67 E-value=0.084 Score=58.40 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCcccc----ccccCHH----
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNET----WKSRRIE---- 245 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 245 (890)
.-..++|.|.+|+|||||+.++..... +.+-+.++++-+.+.. ...++.+.+...-...... ..+.+.-
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 446899999999999999999887762 2356777887776654 4556666665432211100 0111111
Q ss_pred --HHHHHHHHHh---cCCeEEEEEecC
Q 002704 246 --QKALDIFRIL---RGKKFVVLLDDI 267 (890)
Q Consensus 246 --~~~~~l~~~l---~~~~~LlvlDdv 267 (890)
..+-.+.+++ .++++|+++||+
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 1122233444 379999999998
No 389
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.67 E-value=0.082 Score=52.06 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.-.+++|.|..|.|||||.+.++.-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44699999999999999999998654
No 390
>PRK14974 cell division protein FtsY; Provisional
Probab=94.65 E-value=0.22 Score=53.06 Aligned_cols=89 Identities=22% Similarity=0.244 Sum_probs=47.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCH--HHHHHHHHHHhcCcccc-ccccCHHHHH-HH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRL--ESIQEVIGEKIGLLNET-WKSRRIEQKA-LD 250 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 250 (890)
+..+|.++|++|+||||.+..++..+. ...+ .++.+. .+.+.. .+-++..+..++.+... ....+....+ ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 467999999999999999988887762 2233 333443 333322 23345556666543211 0112222222 22
Q ss_pred HHHH-hcCCeEEEEEecCC
Q 002704 251 IFRI-LRGKKFVVLLDDIW 268 (890)
Q Consensus 251 l~~~-l~~~~~LlvlDdv~ 268 (890)
+... ..+.. +|++|-.-
T Consensus 215 i~~~~~~~~D-vVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGID-VVLIDTAG 232 (336)
T ss_pred HHHHHhCCCC-EEEEECCC
Confidence 2221 22333 88888873
No 391
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.65 E-value=0.028 Score=54.04 Aligned_cols=49 Identities=24% Similarity=0.322 Sum_probs=34.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGE 230 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (890)
..+|+|-||=|+||||||+.+++++ + |. ++.=.+.+++-++....++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l---~--~~-~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL---G--FK-VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh---C--Cc-eeeecccCChHHHHHHHhHHH
Confidence 4689999999999999999999998 2 22 222234455555555555544
No 392
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.64 E-value=0.11 Score=52.09 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.-.+++|+|..|.|||||++.++...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998754
No 393
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.26 Score=48.73 Aligned_cols=89 Identities=24% Similarity=0.307 Sum_probs=55.7
Q ss_pred cccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHH
Q 002704 156 TMVGLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLE 222 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (890)
.+=|=.++++++.+..+- +..+-|..+|++|.|||-+|++|+|+- ...| +.|-
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dacf-----irvi------ 243 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DACF-----IRVI------ 243 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---CceE-----Eeeh------
Confidence 344667777777766532 456789999999999999999999975 3333 2221
Q ss_pred HHHHHHHHHhcCccccccccCHHHHHHHHHHHhcC-CeEEEEEecCC
Q 002704 223 SIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRG-KKFVVLLDDIW 268 (890)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 268 (890)
-.++.+.... ........+.+..+. |-++|++|+++
T Consensus 244 --gselvqkyvg--------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 244 --GSELVQKYVG--------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred --hHHHHHHHhh--------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 1122222111 123445566666655 55788888874
No 394
>PRK06217 hypothetical protein; Validated
Probab=94.63 E-value=0.053 Score=52.85 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..|.|.|.+|.||||+|+++.+.+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999886
No 395
>PRK04040 adenylate kinase; Provisional
Probab=94.63 E-value=0.029 Score=54.69 Aligned_cols=25 Identities=40% Similarity=0.590 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..+|.|+|++|+||||+++.+.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999887
No 396
>PRK00625 shikimate kinase; Provisional
Probab=94.62 E-value=0.029 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.|.++|++|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 397
>PRK04328 hypothetical protein; Provisional
Probab=94.60 E-value=0.11 Score=53.31 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=31.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKD 218 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 218 (890)
.-.++.|.|.+|+|||+||.++.... ...-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 45799999999999999999876553 123456788887664
No 398
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.59 E-value=1 Score=49.63 Aligned_cols=123 Identities=19% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCc---eEEEEEeCCC---------------------CCHHHHHHHHH
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFD---LVILVVVSKD---------------------LRLESIQEVIG 229 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~s~~---------------------~~~~~~~~~i~ 229 (890)
+.-..|++||+.|+|||||.+.++-+.....+.-. +..+-...+. -...+..+.|+
T Consensus 414 d~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~il 493 (614)
T KOG0927|consen 414 DLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSIL 493 (614)
T ss_pred CcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHH
Confidence 34468999999999999999999887632222111 1111100100 12345556666
Q ss_pred HHhcCcccc----ccccCHHHHHHHHHHHh-cCCeEEEEEecCCCcccccc---ccccCCCCCCCCcEEEEecCCHHH
Q 002704 230 EKIGLLNET----WKSRRIEQKALDIFRIL-RGKKFVVLLDDIWQRVDLTK---VGVPLPSSQTSASKVVFTTRSEEV 299 (890)
Q Consensus 230 ~~l~~~~~~----~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~~~~~---~~~~l~~~~~~gs~iivTtR~~~v 299 (890)
...+...+. ...-+..+....+..++ -..+-+||||.--+.-+.+. +..++.... |. ||++|.+-.+
T Consensus 494 grfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Gg-vv~vSHDfrl 568 (614)
T KOG0927|consen 494 GRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP--GG-VVLVSHDFRL 568 (614)
T ss_pred HHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC--Cc-eeeeechhhH
Confidence 666654321 01112223333334333 46788999999765544333 333443333 33 6666665433
No 399
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.58 E-value=0.18 Score=53.98 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccC--CC-CCCceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLG--SP-TNFDLVILVVVSKDLRLESIQEVIGEKIGL 234 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (890)
...++-|+|.+|+|||+++..++-.... .. ..-..++|++....+..+.+. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 3578889999999999999988754310 01 122379999999999887764 55666554
No 400
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.57 E-value=0.061 Score=52.52 Aligned_cols=42 Identities=33% Similarity=0.532 Sum_probs=29.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCH
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRL 221 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (890)
.|+|.|-||+||||+|..+...+. .++.| .+.-|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~-~~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL-SKGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH-hcCCc-eEEEEeCCCCCCh
Confidence 689999999999999999666662 22223 4555666666553
No 401
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.57 E-value=0.027 Score=53.85 Aligned_cols=42 Identities=24% Similarity=0.156 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCC-CCCceEEEEEeCCCCC
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSP-TNFDLVILVVVSKDLR 220 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~ 220 (890)
..++.+.|+.|+|||.+|+.+++.+ . +.....+-++.+.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 4678999999999999999999988 3 4455666666655444
No 402
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.55 E-value=0.098 Score=61.49 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccc---cccCHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETW---KSRRIEQKALDI 251 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 251 (890)
.-+++-|+|.+|+|||||+.+++... ...-..++|+.....++. ..+++++...+.. ...+.+.....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45789999999999999998876554 223356799988777764 3667776643211 233445555555
Q ss_pred HHHhc-CCeEEEEEecCC
Q 002704 252 FRILR-GKKFVVLLDDIW 268 (890)
Q Consensus 252 ~~~l~-~~~~LlvlDdv~ 268 (890)
...+. ++.-|||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 456689999974
No 403
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.55 E-value=0.11 Score=57.10 Aligned_cols=89 Identities=18% Similarity=0.291 Sum_probs=51.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCccc----cccccC-HHH-
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNE----TWKSRR-IEQ- 246 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~-~~~- 246 (890)
..-..++|+|..|+|||||++.++... ..+.++.+-+.+.. .+.++.+..+..-+.... ...+.+ ...
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 345689999999999999999998765 12345556565554 344555444433221110 001111 111
Q ss_pred ----HHHHHHHHh--cCCeEEEEEecC
Q 002704 247 ----KALDIFRIL--RGKKFVVLLDDI 267 (890)
Q Consensus 247 ----~~~~l~~~l--~~~~~LlvlDdv 267 (890)
.+-.+.+++ +++.+|+++||+
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 111223333 589999999998
No 404
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.55 E-value=0.033 Score=55.62 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHh
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINN 198 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~ 198 (890)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 405
>PRK08149 ATP synthase SpaL; Validated
Probab=94.53 E-value=0.14 Score=56.08 Aligned_cols=88 Identities=16% Similarity=0.296 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCC-CCHHHHHHHHHHHhcCcc-----ccccccCHH---
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKD-LRLESIQEVIGEKIGLLN-----ETWKSRRIE--- 245 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~--- 245 (890)
.-..++|+|..|+|||||++.++... .-+.++...+... .++.++............ .+.+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 44689999999999999999988754 2233333444433 245566666655332211 000111111
Q ss_pred --HHHHHHHHHh--cCCeEEEEEecC
Q 002704 246 --QKALDIFRIL--RGKKFVVLLDDI 267 (890)
Q Consensus 246 --~~~~~l~~~l--~~~~~LlvlDdv 267 (890)
..+..+.+++ +++++||++||+
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccch
Confidence 1112223333 589999999998
No 406
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.52 E-value=0.056 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=19.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+.|.|.|.+|+||||+|+.+...+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999887
No 407
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.52 E-value=0.11 Score=52.67 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHHHhcc-------CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 002704 156 TMVGLQSQLEEVWRCLVE-------EPVGIVGLYGMGGVGKTTLLTHINNKFL 201 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (890)
.++|..-..+.|+..+.+ ...-+++.+|+.|+||.-.++.+++...
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 456776666666666632 3456899999999999999999998864
No 408
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.51 E-value=0.16 Score=56.96 Aligned_cols=84 Identities=25% Similarity=0.338 Sum_probs=48.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccc---cccCHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETW---KSRRIEQKALDI 251 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 251 (890)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++... ++.++...+.. ...+.+.+...+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 346999999999999999999988762 22346788876543 3333322 44454322111 112333333333
Q ss_pred HHHhcCCeEEEEEecC
Q 002704 252 FRILRGKKFVVLLDDI 267 (890)
Q Consensus 252 ~~~l~~~~~LlvlDdv 267 (890)
. ..+.-+||+|.+
T Consensus 153 ~---~~~~~lVVIDSI 165 (446)
T PRK11823 153 E---EEKPDLVVIDSI 165 (446)
T ss_pred H---hhCCCEEEEech
Confidence 2 234557788876
No 409
>PRK05922 type III secretion system ATPase; Validated
Probab=94.49 E-value=0.11 Score=56.82 Aligned_cols=90 Identities=14% Similarity=0.266 Sum_probs=48.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCC-CCHHHHHHHHHHHhcCccc-----cccccCHHH-
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKD-LRLESIQEVIGEKIGLLNE-----TWKSRRIEQ- 246 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~- 246 (890)
..-..++|.|..|+|||||.+.+.... ..+....+.+... ....+.+.+.......... +.+......
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 344679999999999999999998754 1233333333332 2344455444433322110 001111111
Q ss_pred ----HHHHHHHHh--cCCeEEEEEecCC
Q 002704 247 ----KALDIFRIL--RGKKFVVLLDDIW 268 (890)
Q Consensus 247 ----~~~~l~~~l--~~~~~LlvlDdv~ 268 (890)
.+-.+.+++ +++++|+++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 112233333 5899999999983
No 410
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.49 E-value=0.053 Score=51.74 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 157 MVGLQSQLEEVWRCLVE--EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 157 ~~Gr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
++|....+.++.+.+.. ....-|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 36788888888877744 333567799999999999999999865
No 411
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.48 E-value=0.064 Score=49.30 Aligned_cols=23 Identities=43% Similarity=0.735 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.|.|+|+.|+|||||++.+...+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 412
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.46 E-value=0.14 Score=47.86 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 413
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.45 E-value=0.12 Score=60.26 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=52.0
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcC
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGL 234 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (890)
..++|.+..++.+...+.... .+.++|++|+||||+|+.+.+... ...|...+++.-+ ..+...+++.++..++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 456899988888877776653 566999999999999999998872 2344444433322 23455667777776653
No 414
>PTZ00035 Rad51 protein; Provisional
Probab=94.44 E-value=0.39 Score=51.52 Aligned_cols=91 Identities=20% Similarity=0.182 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCC----CCCCceEEEEEeCCCCCHHHHHHHHHHHhcCcccc-------ccccC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGS----PTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNET-------WKSRR 243 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 243 (890)
.-.++.|+|.+|+|||||+..++-.. .. ...-..++|++....++.+.+ ..+++.++..... ....+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 45789999999999999999887543 11 112246779998887777664 4445555443210 01123
Q ss_pred HHHHHHHH---HHHhc-CCeEEEEEecC
Q 002704 244 IEQKALDI---FRILR-GKKFVVLLDDI 267 (890)
Q Consensus 244 ~~~~~~~l---~~~l~-~~~~LlvlDdv 267 (890)
.++....+ ...+. .+--|||+|-+
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 33333333 22232 34458888887
No 415
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.17 Score=49.47 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCCeEEEEEecCCCccccccccc---cCCCCCCCCcEEEEecCCHHHHhcccCCceee
Q 002704 245 EQKALDIFRILRGKKFVVLLDDIWQRVDLTKVGV---PLPSSQTSASKVVFTTRSEEVCGLMEAHKKFK 310 (890)
Q Consensus 245 ~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~---~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~ 310 (890)
+.....+.+.+--++-+.|||..++-.+.+.+.. .+..-...|+-+++.|..+.++.....+.++-
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 3344556666667788999999987655554321 11111125677888888888988876665543
No 416
>PRK05439 pantothenate kinase; Provisional
Probab=94.42 E-value=0.27 Score=51.59 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
...-+|+|.|.+|+||||+|+.+...+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999988765
No 417
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.41 E-value=0.18 Score=50.21 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.-.+++|.|..|.|||||++.+....
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44689999999999999999997653
No 418
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.41 E-value=0.028 Score=54.90 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+|.|+|++|+||||+|+.+++.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 419
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.40 E-value=0.053 Score=49.94 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=28.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCC
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSK 217 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (890)
++|.|+|..|+|||||++.+.+.+. +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999883 34555555555555
No 420
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.36 E-value=0.062 Score=57.36 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=38.9
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 156 TMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.+||.+..+..++-.+.+....-|.|.|..|+||||+++.+..-.
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 568999999998877777777788899999999999999997654
No 421
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.34 E-value=0.14 Score=59.24 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGE 230 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (890)
.++..|.|.+|.||||+++.+...+.+....-...+.+......-...+.+.+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 3689999999999999999887765211111123455555444445555555544
No 422
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.33 E-value=0.056 Score=54.81 Aligned_cols=88 Identities=23% Similarity=0.170 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccc-------------ccc-
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNE-------------TWK- 240 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------~~~- 240 (890)
.-.++.|.|.+|+|||+++.++..... +..-+.++|++..... .++.+.+. .++.... ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 457999999999999999998664431 1113467888775543 45544433 3332110 001
Q ss_pred ----ccCHHHHHHHHHHHhcC-CeEEEEEecC
Q 002704 241 ----SRRIEQKALDIFRILRG-KKFVVLLDDI 267 (890)
Q Consensus 241 ----~~~~~~~~~~l~~~l~~-~~~LlvlDdv 267 (890)
..+.+.....+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 24566666766666543 4468888876
No 423
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.32 E-value=0.039 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
...|.|+|++|+||||+|+.+++.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 424
>PRK06851 hypothetical protein; Provisional
Probab=94.30 E-value=1 Score=48.51 Aligned_cols=54 Identities=22% Similarity=0.192 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCC
Q 002704 159 GLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKD 218 (890)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 218 (890)
|.-.-.+.+. ++-.+++.|.|.+|+|||||++.++.... +..++..++-|.+..
T Consensus 201 G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dP 254 (367)
T PRK06851 201 GAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDP 254 (367)
T ss_pred cHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 5544445444 44558899999999999999999999873 456666665555444
No 425
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.25 E-value=0.11 Score=56.94 Aligned_cols=89 Identities=24% Similarity=0.298 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccc-----cccccCHHH---
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNE-----TWKSRRIEQ--- 246 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~--- 246 (890)
.-..++|.|..|+|||||++.+.... + ....++.....+...+.++.+..+..-+.... +.+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~---~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT---D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 44689999999999999999888754 1 22233333333333455555554443221110 001111111
Q ss_pred --HHHHHHHHh--cCCeEEEEEecC
Q 002704 247 --KALDIFRIL--RGKKFVVLLDDI 267 (890)
Q Consensus 247 --~~~~l~~~l--~~~~~LlvlDdv 267 (890)
.+-.+.+++ +++++|+++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 111233344 579999999998
No 426
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.24 E-value=0.15 Score=56.21 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCccc----cccccCH-HH--
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNE----TWKSRRI-EQ-- 246 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~-~~-- 246 (890)
.-..++|.|.+|+|||||+.++..... ..+-+.++++-+.+.. .+.++.+.+...-..... ...+.+. ..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446899999999999999999876652 1222467777776654 456666666653221110 0011111 11
Q ss_pred ---HHHHHHHHh---cCCeEEEEEecC
Q 002704 247 ---KALDIFRIL---RGKKFVVLLDDI 267 (890)
Q Consensus 247 ---~~~~l~~~l---~~~~~LlvlDdv 267 (890)
..-.+-+++ +++++||++||+
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecch
Confidence 122234444 679999999998
No 427
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.23 E-value=2.8 Score=45.39 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC--CHHHHHHHHHHHhcCc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL--RLESIQEVIGEKIGLL 235 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~ 235 (890)
...||..+|.-|.||||-|-.+++.+. . ....+-+...+.+ ..-+-++.++++.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk---k-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK---K-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH---H-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 457899999999999999999998882 2 2222223333333 3344466677776554
No 428
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.23 E-value=0.033 Score=53.91 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 429
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.23 E-value=0.14 Score=55.57 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
No 430
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.22 E-value=0.21 Score=52.78 Aligned_cols=88 Identities=23% Similarity=0.321 Sum_probs=49.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeC-CCCCHHHHHHHHHHHhcCccc-----cccccCHH---
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVS-KDLRLESIQEVIGEKIGLLNE-----TWKSRRIE--- 245 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 245 (890)
.-..++|+|..|.|||||.+.+.... . -+..+...+. +..++.++.......-+.... +.+.....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~---~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT---T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 44689999999999999999988765 1 1233334443 333555655555543222110 00111111
Q ss_pred --HHHHHHHHHh--cCCeEEEEEecC
Q 002704 246 --QKALDIFRIL--RGKKFVVLLDDI 267 (890)
Q Consensus 246 --~~~~~l~~~l--~~~~~LlvlDdv 267 (890)
...-.+-+++ +++.+|+++||+
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 1111222333 589999999998
No 431
>PF13245 AAA_19: Part of AAA domain
Probab=94.18 E-value=0.11 Score=42.03 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=17.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHh
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINN 198 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~ 198 (890)
+.+++.|.|++|.|||+++.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHH
Confidence 446888999999999955544433
No 432
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.18 E-value=0.14 Score=56.20 Aligned_cols=89 Identities=21% Similarity=0.333 Sum_probs=51.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCccc----cccccCHHH-H
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNE----TWKSRRIEQ-K 247 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~-~ 247 (890)
..-..++|.|..|+|||||.+.+++.. .-+.++++-+.+.. .+.++.+..+..-+.... ...+.+... .
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 344689999999999999999998765 22566777776654 344544443332111110 001111111 1
Q ss_pred -----HHHHHHHh--cCCeEEEEEecC
Q 002704 248 -----ALDIFRIL--RGKKFVVLLDDI 267 (890)
Q Consensus 248 -----~~~l~~~l--~~~~~LlvlDdv 267 (890)
.-.+-+++ +++++|+++||+
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccch
Confidence 11122333 589999999998
No 433
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.18 E-value=0.076 Score=53.88 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=41.6
Q ss_pred HHHHHHhc--cCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHH
Q 002704 165 EEVWRCLV--EEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESI 224 (890)
Q Consensus 165 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 224 (890)
.+++..+. .++..+|+|.|.||+|||||.-.+...+ ..+++--.++-|+-|..++--.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccc
Confidence 45555553 3667899999999999999999998887 34455455666666666654333
No 434
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.14 E-value=0.055 Score=58.52 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=61.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
....|.|.|+.|.||||+.+.+.+.. .......++. +.+... -..... ..+-...+ .+.........+...
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E--~~~~~~-~~~i~q~e--vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIE--YVHRNK-RSLINQRE--VGLDTLSFANALRAA 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChh--hhccCc-cceEEccc--cCCCCcCHHHHHHHh
Confidence 35789999999999999999988765 2333344443 222211 110000 00000000 111123355567778
Q ss_pred hcCCeEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHH
Q 002704 255 LRGKKFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEE 298 (890)
Q Consensus 255 l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~ 298 (890)
++..+=.|++|++.+...+...... .. .|..|+.|.-...
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~a---a~-tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTA---AE-TGHLVFGTLHTNS 231 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHH---HH-cCCcEEEEEcCCC
Confidence 8889999999999766555432222 12 4555666665543
No 435
>PRK05973 replicative DNA helicase; Provisional
Probab=94.13 E-value=0.26 Score=49.61 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIG 229 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (890)
.-.++.|.|.+|+|||+++.++..... + .-..+++++.... ..++.+.+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~-~Ge~vlyfSlEes--~~~i~~R~~ 112 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--K-SGRTGVFFTLEYT--EQDVRDRLR 112 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--h-cCCeEEEEEEeCC--HHHHHHHHH
Confidence 346899999999999999999876652 2 2345777766554 455555543
No 436
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.13 E-value=0.074 Score=51.85 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=31.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCC
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSK 217 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (890)
.++|.|+|+.|+|||||++.+.... ...|...++.+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TTR~ 40 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTTRP 40 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEESS-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecccC
Confidence 4789999999999999999999987 67787666665443
No 437
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.13 E-value=0.069 Score=57.03 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=40.5
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..+||.++.+..+...+.+....-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999988888888888899999999999999997654
No 438
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.12 E-value=0.087 Score=57.52 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=31.1
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 163 QLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 163 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..+.+++.+.......+.|.|.||+|||++.+++.+.+
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34555666666666889999999999999999999887
No 439
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.10 E-value=0.034 Score=55.03 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+|+|.|.+|+||||+++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 440
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.07 E-value=0.028 Score=67.04 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=58.2
Q ss_pred CCeEEEEEecCCCccc---cccc----cccCCCCCCCCcEEEEecCCHHHHhcccCCceeecCCCChh-hHHHHHHHHhc
Q 002704 257 GKKFVVLLDDIWQRVD---LTKV----GVPLPSSQTSASKVVFTTRSEEVCGLMEAHKKFKVQCLSGN-DAWELFRQKVG 328 (890)
Q Consensus 257 ~~~~LlvlDdv~~~~~---~~~~----~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~ 328 (890)
..+-|+++|+.-...+ -..+ ...+. . .|+.+|+||....+.........+.-..+..+ +... |..++.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~-~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Ykl~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--K-QNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYKLL 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--h-cCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEEEC
Confidence 4789999999864322 1122 22221 2 57889999999887543221111110000000 1000 000000
Q ss_pred CCccCCCccHHHHHHHHHhHhCCchhHHHHHHHHhccCCChhHHHHHHHHHhcc
Q 002704 329 EETLNCHPYILELAQTVTKECGGLPLALITIGRAMACKKTPEEWSYAIQVLRTS 382 (890)
Q Consensus 329 ~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~~ 382 (890)
... +. ...|-.|++++ |+|-.|..-|..+.. ....+.+.++..|...
T Consensus 477 -~G~--~g--~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 477 -KGI--PG--ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSAL 523 (771)
T ss_pred -CCC--CC--CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 001 11 24577787776 788888877777654 3444566666665543
No 441
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.07 E-value=0.13 Score=56.62 Aligned_cols=91 Identities=24% Similarity=0.322 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCcccc----ccccCH-H---
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNET----WKSRRI-E--- 245 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~-~--- 245 (890)
.-..++|.|.+|+|||+|+.++..... +.+-+.++++-+.+.. ...++.+.+...-...... ..+.+. .
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 346899999999999999999887752 2334788888887665 4556666665432111100 011111 1
Q ss_pred --HHHHHHHHHh---cCCeEEEEEecC
Q 002704 246 --QKALDIFRIL---RGKKFVVLLDDI 267 (890)
Q Consensus 246 --~~~~~l~~~l---~~~~~LlvlDdv 267 (890)
..+-.+.+++ +++++|+++||+
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecCh
Confidence 1122234444 468999999998
No 442
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.05 E-value=0.16 Score=46.01 Aligned_cols=116 Identities=21% Similarity=0.398 Sum_probs=52.6
Q ss_pred cccceEEEEccccccccccC--CCCCCcceEEEeccCCCccccChhhhccCCCCcEEEeecCCCCcccC-ccccCccCCC
Q 002704 513 EWEKLRRLSLMENQIENLSE--VPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELP-SGISKLVSLE 589 (890)
Q Consensus 513 ~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~i~~lp-~~i~~L~~L~ 589 (890)
.+.+++.+.+.. .+..++. +..+++|+.+.+..+ ...++...|..++.|+.+.+. + .+..++ ..+..+.+|+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~-~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP-N-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET-S-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc-c-ccccccccccccccccc
Confidence 334666666653 3444432 667777888877642 445566667777778888886 4 344443 3455677888
Q ss_pred EEeccCCCccccch-HHhcCCcCCEeeccCCCCccccChhhhcCCccCc
Q 002704 590 HLDLSTSLISEIPE-ELKALVNLKCLNLENTGLLLKIPLQLISHFSRLH 637 (890)
Q Consensus 590 ~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~i~~l~~L~ 637 (890)
.+.+..+ +..++. .+.+. +|+.+.+..+ +..++...+.++++|+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 8887654 555544 34555 7777777653 4556666666666553
No 443
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.05 E-value=0.044 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.++.|+|++|+||||+++.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 444
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.03 E-value=0.038 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+|.|.|.+|+||||+|+.+...+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 445
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.02 E-value=0.075 Score=47.77 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHh
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRIL 255 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 255 (890)
.+-|.|.|-+|+||||++..++... . .-|+++|+-..-..+...--+... +..-+.+.+.+.|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y~-----c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEYK-----CHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhccccccc-----CccccHHHHHHHHHHHH
Confidence 3568999999999999999999654 2 235565543322222221111111 12335566666666665
Q ss_pred cCCeEEEEEecCCCccccccccccCCCCCCCCcEEEEecCCHHHHhcc
Q 002704 256 RGKKFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVCGLM 303 (890)
Q Consensus 256 ~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~ 303 (890)
.+..+++ +|..- ..||..- -.-.+++||-+..+..++
T Consensus 74 ~~Gg~IV---------DyHgC-d~Fperw-fdlVvVLr~~~s~LY~RL 110 (176)
T KOG3347|consen 74 IEGGNIV---------DYHGC-DFFPERW-FDLVVVLRTPNSVLYDRL 110 (176)
T ss_pred hcCCcEE---------eeccc-Cccchhh-eeEEEEEecCchHHHHHH
Confidence 4433322 22211 1222221 234567777777665544
No 446
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.02 E-value=0.066 Score=57.04 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=37.9
Q ss_pred CcccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++|.+..++.+.-.+.+.+...+.+.|.+|+||||+|+.+.+-+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4578999999988766655555679999999999999999997765
No 447
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.01 E-value=0.054 Score=52.48 Aligned_cols=23 Identities=39% Similarity=0.742 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+|+|.|.+|+||||+|+.+...+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 448
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.00 E-value=0.054 Score=51.48 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
...+++|+|..|+|||||++.+...+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999877
No 449
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.98 E-value=0.083 Score=52.88 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=35.2
Q ss_pred HHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCC
Q 002704 163 QLEEVWRCLVE--EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLR 220 (890)
Q Consensus 163 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 220 (890)
+..++++.+.. ++..+|+|.|+||+|||||.-.+...+. .+.+--.++-|.-|..++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCC
Confidence 44555555533 5678999999999999999999988872 233333444454444444
No 450
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.95 E-value=0.3 Score=53.63 Aligned_cols=87 Identities=26% Similarity=0.374 Sum_probs=44.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCC-CCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKD-LRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
..+|+++|+.|+||||++..++.... .....+.+..+..... ....+-+...++.++.+.. ...+..+....+ ..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~-~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~~al-~~ 266 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAV-IRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQLML-HE 266 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cCCCHHHHHHHH-HH
Confidence 46999999999999999998876541 1112233444432221 1222334455555554432 223333333222 23
Q ss_pred hcCCeEEEEEecC
Q 002704 255 LRGKKFVVLLDDI 267 (890)
Q Consensus 255 l~~~~~LlvlDdv 267 (890)
+.++ -++++|-.
T Consensus 267 l~~~-d~VLIDTa 278 (420)
T PRK14721 267 LRGK-HMVLIDTV 278 (420)
T ss_pred hcCC-CEEEecCC
Confidence 4443 34556654
No 451
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.91 E-value=0.2 Score=51.26 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCChHHHHH-HHHHhhccCCCCCCceE-EEEEeCCCC-CHHHHHHHHHHHhcCcc-----ccccccCHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLL-THINNKFLGSPTNFDLV-ILVVVSKDL-RLESIQEVIGEKIGLLN-----ETWKSRRIEQ 246 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 246 (890)
.-..++|.|.+|+|||+|| ..+.+.. .-+.+ +++-+.+.. ...++.+.+.+.-.... .+.+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3467999999999999996 5565542 22334 566666554 45666666664321111 0001111111
Q ss_pred -----HHHHHHHHh--cCCeEEEEEecCC
Q 002704 247 -----KALDIFRIL--RGKKFVVLLDDIW 268 (890)
Q Consensus 247 -----~~~~l~~~l--~~~~~LlvlDdv~ 268 (890)
.+-.+-+++ +++.+||++||+-
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 111222222 5899999999983
No 452
>PRK13949 shikimate kinase; Provisional
Probab=93.89 E-value=0.052 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+.|.|+|++|+||||+++.+++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999887
No 453
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.89 E-value=0.18 Score=55.92 Aligned_cols=87 Identities=24% Similarity=0.258 Sum_probs=47.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCC-HHHHHHHHHHHhcCccccccccCHHHHHHHHHHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLR-LESIQEVIGEKIGLLNETWKSRRIEQKALDIFRI 254 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (890)
.+++.++|++|+||||++..++..+ ........+..|+...... ..+-++.-++.++.+.. ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 3699999999999999999887765 1012234566665533211 11222333333443321 22334444444443
Q ss_pred hcCCeEEEEEecC
Q 002704 255 LRGKKFVVLLDDI 267 (890)
Q Consensus 255 l~~~~~LlvlDdv 267 (890)
+. ..=+||+|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 23 3457888876
No 454
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.87 E-value=0.25 Score=49.17 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.-.+++|.|+.|.|||||++.+....
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 44699999999999999999998764
No 455
>PRK13947 shikimate kinase; Provisional
Probab=93.85 E-value=0.05 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
-|.|+|++|+||||+|+.+++.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 456
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.81 E-value=0.074 Score=55.23 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=40.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHH
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGE 230 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (890)
..-+++.|+|.+|+|||+++.++.... ......++||+.... ..++.+.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 456899999999999999999998876 345888999988775 3444444443
No 457
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.79 E-value=0.063 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
....|.++||+|.||||..+.++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 44678899999999999999999887
No 458
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.78 E-value=0.2 Score=56.15 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=30.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSK 217 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (890)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcC
Confidence 347999999999999999999977662 1223577886654
No 459
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.78 E-value=0.04 Score=29.91 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=6.5
Q ss_pred CCCEEeccCCCccccc
Q 002704 587 SLEHLDLSTSLISEIP 602 (890)
Q Consensus 587 ~L~~L~L~~~~i~~lp 602 (890)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 460
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.75 E-value=0.048 Score=50.63 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 002704 178 IVGLYGMGGVGKTTLLTHIN 197 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~ 197 (890)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 461
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.73 E-value=0.12 Score=52.68 Aligned_cols=36 Identities=33% Similarity=0.367 Sum_probs=22.7
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 163 QLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 163 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+.+.+..++.... +..|+|++|.||||++..+....
T Consensus 6 Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 3444444444433 78999999999997776665554
No 462
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.73 E-value=0.046 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 463
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.72 E-value=0.054 Score=52.35 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
++|.+.|++|+||||+|+.+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998775
No 464
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.70 E-value=0.16 Score=54.77 Aligned_cols=63 Identities=25% Similarity=0.286 Sum_probs=46.1
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHH
Q 002704 156 TMVGLQSQLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQE 226 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 226 (890)
.++|++..+..+..++..+ +.+.+.|.+|+|||+||+.++... ... ..+|.+.......++.-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~~~---~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---GLP---FVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---CCC---eEEEecCCCCCHHHhcC
Confidence 3779888888877666554 478999999999999999999887 322 35556666655555533
No 465
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.70 E-value=0.24 Score=48.28 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.+.|.|+|++|+||+||++.+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998775
No 466
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.68 E-value=0.091 Score=49.11 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=28.3
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 163 QLEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 163 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.++++.+++.+ +++.++|..|+|||||+..+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 34566666655 799999999999999999998764
No 467
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.67 E-value=0.081 Score=52.14 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhh
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNK 199 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 199 (890)
..-.+++|+|.+|.|||||++.+.--
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 34469999999999999999998643
No 468
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.66 E-value=0.32 Score=50.26 Aligned_cols=40 Identities=15% Similarity=0.319 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCC
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSK 217 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (890)
.-.++.|.|.+|+|||++|.+++.... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 457899999999999999999866541 2345678888764
No 469
>PRK14530 adenylate kinase; Provisional
Probab=93.65 E-value=0.055 Score=54.35 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+.|.|+|++|+||||+|+.++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 470
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.64 E-value=0.26 Score=54.17 Aligned_cols=47 Identities=23% Similarity=0.344 Sum_probs=34.5
Q ss_pred HHHHHHHHHhc-----c--CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEE
Q 002704 162 SQLEEVWRCLV-----E--EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILV 213 (890)
Q Consensus 162 ~~~~~l~~~L~-----~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 213 (890)
+-+.++..||. . -+.+++.|.|++|+||||-++.++..+ .+..+=|.
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~ 142 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWS 142 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeeec
Confidence 44566777776 2 345699999999999999999988765 33445554
No 471
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.64 E-value=0.2 Score=55.19 Aligned_cols=89 Identities=20% Similarity=0.303 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCccc-----cccccCHHH--
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNE-----TWKSRRIEQ-- 246 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~-- 246 (890)
.-..++|+|..|+|||||++.+.... ..+.++...+.... ...++...+...-+.... +.+......
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 44689999999999999999887643 22344444344333 455555555444322110 001111111
Q ss_pred ---HHHHHHHHh--cCCeEEEEEecCC
Q 002704 247 ---KALDIFRIL--RGKKFVVLLDDIW 268 (890)
Q Consensus 247 ---~~~~l~~~l--~~~~~LlvlDdv~ 268 (890)
....+-+++ +++++|+++||+-
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchh
Confidence 111223333 5899999999983
No 472
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.64 E-value=0.1 Score=55.05 Aligned_cols=49 Identities=31% Similarity=0.362 Sum_probs=35.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHH
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEV 227 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 227 (890)
.+++.+.|.|||||||+|.+.+-... .....+.-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988665552 22244777777777776666554
No 473
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.63 E-value=0.066 Score=51.76 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..+|.|+|.+|+||||+|+.++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 474
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.58 E-value=0.21 Score=58.89 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..-..|+|+|..|+|||||+|.+..-+
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345789999999999999999986554
No 475
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.11 Score=50.92 Aligned_cols=45 Identities=33% Similarity=0.423 Sum_probs=36.2
Q ss_pred cccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 156 TMVGLQSQLEEVWRCLVE-------------EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 156 ~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.+=|.|-+.+++.+..+- +..+-|..+|++|.|||-||++|+++-
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 345777777777776531 567889999999999999999999986
No 476
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.54 E-value=0.033 Score=32.63 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=14.0
Q ss_pred CCcEEEeecCCCCcccCccccCc
Q 002704 563 SLKVLNLSRYMGLLELPSGISKL 585 (890)
Q Consensus 563 ~L~~L~L~~~~~i~~lp~~i~~L 585 (890)
+|++|||+ ++.++.+|++|++|
T Consensus 1 ~L~~Ldls-~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLS-GNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEET-SSEESEEGTTTTT-
T ss_pred CccEEECC-CCcCEeCChhhcCC
Confidence 46777777 44666777766543
No 477
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.47 E-value=0.14 Score=50.62 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+|.|.|+.|+||||+++.+++.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 478
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.46 E-value=0.44 Score=60.59 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
...+-|.++|++|+|||.||++++.+.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999999876
No 479
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.45 E-value=0.27 Score=54.26 Aligned_cols=90 Identities=22% Similarity=0.315 Sum_probs=51.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCcccc----ccccC-HHH--
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNET----WKSRR-IEQ-- 246 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~~-~~~-- 246 (890)
..-..++|.|..|+|||||++.++... .. -..+++..-.+.....++.+.+...-+..... ..+.+ ...
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~---~~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT---QC-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CC-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 345689999999999999999998764 11 12444444444445566655555432211100 01111 111
Q ss_pred ---HHHHHHHHh--cCCeEEEEEecC
Q 002704 247 ---KALDIFRIL--RGKKFVVLLDDI 267 (890)
Q Consensus 247 ---~~~~l~~~l--~~~~~LlvlDdv 267 (890)
..-.+-+++ +++++|+++||+
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccch
Confidence 111223333 589999999998
No 480
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.44 E-value=0.3 Score=54.53 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..|++++|+.|+||||.+..++..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 3699999999999999999998765
No 481
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.43 E-value=0.27 Score=54.11 Aligned_cols=91 Identities=19% Similarity=0.289 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCC-CHHHHHHHHHHHhcCccc----cccccC-HHH--
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDL-RLESIQEVIGEKIGLLNE----TWKSRR-IEQ-- 246 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~-~~~-- 246 (890)
.-..++|.|.+|+|||||+.++..... ..+-..++++-+.+.. .+.++.+.+...-..... ...+.+ ...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446899999999999999999887652 2223467777776654 456666666543211110 001111 111
Q ss_pred ---HHHHHHHHh---cCCeEEEEEecC
Q 002704 247 ---KALDIFRIL---RGKKFVVLLDDI 267 (890)
Q Consensus 247 ---~~~~l~~~l---~~~~~LlvlDdv 267 (890)
.+-.+-+++ +++++|+++||+
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecch
Confidence 122234444 468999999998
No 482
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.43 E-value=0.063 Score=52.45 Aligned_cols=36 Identities=28% Similarity=0.190 Sum_probs=26.5
Q ss_pred HHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 164 LEEVWRCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 164 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..+++...... ...+.|+|..|.||||+++.+....
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33344433332 4689999999999999999988765
No 483
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.43 E-value=0.064 Score=47.92 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHhhc
Q 002704 179 VGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~ 200 (890)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998765
No 484
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.42 E-value=0.26 Score=47.12 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=45.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCcccccccc-CHHHHHHHHHHHh
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSR-RIEQKALDIFRIL 255 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~l~~~l 255 (890)
.++.|.|.+|+||||+|..+.... .. .++++..... ...+..+.|..........+... ...++...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~---~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GL---QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CC---CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368999999999999999998765 11 1344444333 33455555544332222222111 1122333343333
Q ss_pred cCCeEEEEEecC
Q 002704 256 RGKKFVVLLDDI 267 (890)
Q Consensus 256 ~~~~~LlvlDdv 267 (890)
.+. -++++|.+
T Consensus 75 ~~~-~~VlID~L 85 (170)
T PRK05800 75 APG-RCVLVDCL 85 (170)
T ss_pred CCC-CEEEehhH
Confidence 332 36888886
No 485
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.42 E-value=0.062 Score=51.23 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHHhhc
Q 002704 179 VGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~ 200 (890)
|.|.|.+|+||||+++.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999998877
No 486
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.41 E-value=0.39 Score=45.81 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=45.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHHHHHHHHhcCccccccccCHHHHHHHHHHHhcC
Q 002704 178 IVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQEVIGEKIGLLNETWKSRRIEQKALDIFRILRG 257 (890)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 257 (890)
++.|.|.+|.|||++|.++.... ...++++.-.+.++. ++.+.|..--......+ ...+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w---~t~E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDD-EMAERIARHRKRRPAHW---RTIETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCc---eEeecHHHHHHHHHh
Confidence 36799999999999999987542 235677777766654 34444444221112112 222222233333311
Q ss_pred --CeEEEEEecC
Q 002704 258 --KKFVVLLDDI 267 (890)
Q Consensus 258 --~~~LlvlDdv 267 (890)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2337999997
No 487
>PRK15453 phosphoribulokinase; Provisional
Probab=93.41 E-value=0.36 Score=49.45 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
...+|+|.|.+|+||||+|+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998766
No 488
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.39 E-value=0.06 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
++|.|+|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998754
No 489
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.39 E-value=0.063 Score=50.62 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHhhc
Q 002704 179 VGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~ 200 (890)
|.|+|++|.||||+|+.+...+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 490
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.37 E-value=0.082 Score=55.88 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=31.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccCCCCCCceEEEEEeCCCCCHHHHH
Q 002704 177 GIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDLVILVVVSKDLRLESIQ 225 (890)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 225 (890)
+++.+.|-||+||||+|...+-... ..-..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A---~~G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALA---RRGKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH---HTTS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHh---hCCCCeeEeecCCCccHHHHh
Confidence 6899999999999999988776652 122346666655554444443
No 491
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.37 E-value=0.15 Score=55.93 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=37.3
Q ss_pred CCcccchHHHHHHHHHHhc-------c----C-------CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 154 EPTMVGLQSQLEEVWRCLV-------E----E-------PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 154 ~~~~~Gr~~~~~~l~~~L~-------~----~-------~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
...++|.+..++.+...+. . . ....|.++|++|+|||++|+.++...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4567999999998876651 1 1 12579999999999999999999776
No 492
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.33 E-value=0.14 Score=53.98 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=40.5
Q ss_pred CcccchHHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 155 PTMVGLQSQLEEVWRCLVE------EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 155 ~~~~Gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..++|.++.++++++.+.. ...+++.++|+.|.||||||..+.+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999843 456899999999999999999998877
No 493
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.33 E-value=0.15 Score=55.86 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccCCCCCCc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFD 208 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~ 208 (890)
.-+-.+|+|.+|.||||+.+.++........+++
T Consensus 100 ~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d 133 (614)
T KOG0927|consen 100 RGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID 133 (614)
T ss_pred CCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc
Confidence 4468999999999999999999987644445554
No 494
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.31 E-value=0.33 Score=51.10 Aligned_cols=26 Identities=46% Similarity=0.680 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
.-.++++.|+.|.|||||.+.+....
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 34699999999999999999998765
No 495
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.31 E-value=0.079 Score=51.96 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 496
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.32 Score=45.93 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
-..+-|.|+.|+|||||.+.++--.
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHccc
Confidence 3578999999999999999998655
No 497
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.29 E-value=0.088 Score=52.49 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=27.4
Q ss_pred HHhccCCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 169 RCLVEEPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 169 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
+.+...++++|+++|..|+|||||..++.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 33455789999999999999999999998875
No 498
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.29 E-value=0.25 Score=57.45 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 174 EPVGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
..-..++|+|+.|.|||||++.+..-+
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455799999999999999999997655
No 499
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.27 E-value=0.078 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 002704 176 VGIVGLYGMGGVGKTTLLTHINNKF 200 (890)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (890)
...|.|+|+.|+||||+++.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3569999999999999999999876
No 500
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.25 E-value=0.075 Score=45.80 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHH
Q 002704 175 PVGIVGLYGMGGVGKTTLLTHIN 197 (890)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~ 197 (890)
.-..++|+|++|.|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34689999999999999999875
Done!