Query 002704
Match_columns 890
No_of_seqs 388 out of 4273
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 17:32:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002704.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1422-1425//hhsearch_pdb/002704hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 392.4 19.2 315 154-491 127-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 340.7 28.9 313 152-490 121-452 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 325.5 17.2 286 155-483 128-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 1.0 1 1 294.2 24.9 307 153-488 122-450 (591)
5 4ecn_A Leucine-rich repeat pro 1.0 1 1 202.3 17.5 324 510-865 443-838 (876)
6 4eco_A Uncharacterized protein 1.0 1 1 200.6 14.4 339 511-864 202-597 (636)
7 3rgz_A Protein brassinosteroid 1.0 1 1 194.1 15.7 306 514-849 393-745 (768)
8 4fmz_A Internalin; leucine ric 1.0 1 1 193.6 18.8 289 511-849 40-328 (347)
9 4ecn_A Leucine-rich repeat pro 1.0 1 1 190.9 18.2 331 513-867 489-872 (876)
10 3rgz_A Protein brassinosteroid 1.0 1 1 190.5 14.6 111 752-868 630-741 (768)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=392.35 Aligned_cols=315 Identities=14% Similarity=0.090 Sum_probs=255.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCC---CCEEEEEECCCCCHHHHHHHHHHH--HCCCCCCCCCEEEEEEECCCC--CHHHHHH
Q ss_conf 875213278999999994159---961999993998729899999996--303999997559999948977--9888999
Q 002704 154 EPTMVGLQSQLEEVWRCLVEE---PVGIVGLYGMGGVGKTTLLTHINN--KFLGSPTNFDLVILVVVSKDL--RLESIQE 226 (890)
Q Consensus 154 ~~~~~Gr~~~~~~i~~~l~~~---~~~vi~I~G~~GiGKTtLa~~~~~--~~~~~~~~f~~~~wv~~s~~~--~~~~l~~ 226 (890)
.+..|||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +. .++.+|+.++|+++++.+ +...++.
T Consensus 127 ~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 127 QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HHHCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 7760784179999999872515789628999869999889999999984069-874669957999978987879999999
Q ss_pred HHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 99988168610-----001459889999999981697-199999057874333333446889999983999942878787
Q 002704 227 VIGEKIGLLNE-----TWKSRRIEQKALDIFRILRGK-KFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVC 300 (890)
Q Consensus 227 ~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~v~ 300 (890)
.|+.+++.... .....+...+...+.+.+.++ |+||||||||+..++ .+ +. . .||+||+|||+..++
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~~-~-~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----AQ-E-LRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----HH-H-TTCEEEEEESBGGGG
T ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CC----CC-C-CCCEEEEECCCHHHH
T ss_conf 99999853755345555331469999999999976898489999799971441-54----32-6-998899974977999
Q ss_pred HCCC-CCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 2034-774153389994657999998816875599900799999999680995049999998750599966899999998
Q 002704 301 GLME-AHKKFKVQCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMACKKTPEEWSYAIQVL 379 (890)
Q Consensus 301 ~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~~~~l 379 (890)
..++ ....|++++|+.+++|+||.+.++... .++++++++.+|+++|+|+|||++++|+.++.+ .|+.. +.+
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l 351 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQL 351 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHH
T ss_pred HHCCCCCEEEECCCCCHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC----HHHHH-HHH
T ss_conf 97088973898999898999999998744899--855689999999999599839999999984434----48999-875
Q ss_pred HCCCCCCCCCCCCHHCHHHHHCCCCCCCHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCCCC-C
Q ss_conf 21368899997530104776103999702345776-----------45048998411678899998638--9756866-6
Q 002704 380 RTSSSQFPGLGNEVYPLLKFSYDNLPNDTIRSCLL-----------YCCLYPEDCCISKENLVDCWIGE--GLLNGSV-T 445 (890)
Q Consensus 380 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~l-----------~~~~fp~~~~i~~~~l~~~w~~~--g~i~~~~-~ 445 (890)
....+.. ..+.+..++.+||+.||.+ +|.||+ |||+||+++.|+ +.+|+|+ ||+.... .
T Consensus 352 ~~~l~~~--~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~ 424 (549)
T 2a5y_B 352 NNKLESR--GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEE 424 (549)
T ss_dssp HHHHHHH--CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------C
T ss_pred HHHHHCC--CHHHHHHHHHCCCCCCCHH-HHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCC
T ss_conf 7876136--4777898975162022679-99997526522336743235608997666----533110135500267789
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCC---CCCEEEHHHHHHHHHHHHHHHH
Q ss_conf 543566988999999821135568---8937844999998999884321
Q 002704 446 LGSHEQGYHIVGILVQACLLEEVD---EDEVKMHDVIRDMALWLACDAE 491 (890)
Q Consensus 446 ~~~~~~~~~~l~~L~~~~ll~~~~---~~~~~mHdli~~~a~~~~~~~~ 491 (890)
...++.+. ++++|+++||++... ..+|+|||+||++|+.++.+++
T Consensus 425 ~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 425 QLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCHHHHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 99999999-9999987588367147980499967699999999988989
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=340.73 Aligned_cols=313 Identities=19% Similarity=0.216 Sum_probs=251.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHC--CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCEEEEEEECCCCC--HHHHHH
Q ss_conf 888752132789999999941--599619999939987298999999963039999-975599999489779--888999
Q 002704 152 PTEPTMVGLQSQLEEVWRCLV--EEPVGIVGLYGMGGVGKTTLLTHINNKFLGSPT-NFDLVILVVVSKDLR--LESIQE 226 (890)
Q Consensus 152 ~~~~~~~Gr~~~~~~i~~~l~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~s~~~~--~~~l~~ 226 (890)
+..+.|+||+++++++.+.|. ++..++|+|+||||+||||||+++|++...... +++.++|+++++..+ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 99864125799999999998613588777999918988888999998607567886278817999978857267999999
Q ss_pred HHHHHHCCCCC--CCCCCCHHHHHHHHHHHHCCC--EEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHC
Q ss_conf 99988168610--001459889999999981697--19999905787433333344688999998399994287878720
Q 002704 227 VIGEKIGLLNE--TWKSRRIEQKALDIFRILRGK--KFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVCGL 302 (890)
Q Consensus 227 ~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~v~~~ 302 (890)
.++..+..... .......+.+...++..+.++ |+||||||+|+...|..+ +.|++||+|||++.++..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH--------CCCCEEEEECCCHHHHHH
T ss_conf 999986553033347887778999999999735678789999567997788763--------689789999277899876
Q ss_pred -CCCCCEEECCC-CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf -34774153389-9946579999988168755999007999999996809950499999987505999668999999982
Q 002704 303 -MEAHKKFKVQC-LSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMACKKTPEEWSYAIQVLR 380 (890)
Q Consensus 303 -~~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~~~~l~ 380 (890)
++....+.+.+ |+.+++++||...++... +.+++.+.+|+++|+|+||||+++|++|+.+. ..|...++.+.
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHCCCH----HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHHHHHHHHHH
T ss_conf 3488437982588887889999998657981----34838899999984997799999999862480--57999999986
Q ss_pred CCCCCC-C----CCCCCHHCHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 136889-9----99753010477610399970234577645048998411678899998638975686665435669889
Q 002704 381 TSSSQF-P----GLGNEVYPLLKFSYDNLPNDTIRSCLLYCCLYPEDCCISKENLVDCWIGEGLLNGSVTLGSHEQGYHI 455 (890)
Q Consensus 381 ~~~~~~-~----~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~~~~~~ 455 (890)
...... . ...+.+..++.+||+.||++ .|.||+|||+||+++.|+++.++.+|.++ .+.++.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~ 414 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDI 414 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHH-HHHHHHHHCCCCCCCEECHHHHHHHHCCC-----------HHHHHHH
T ss_conf 50443034655644677999999899867999-99999972813799751899999885898-----------8899999
Q ss_pred HHHHHHHCCCCCCCCC---CEEEHHHHHHHHHHHHHHH
Q ss_conf 9999982113556889---3784499999899988432
Q 002704 456 VGILVQACLLEEVDED---EVKMHDVIRDMALWLACDA 490 (890)
Q Consensus 456 l~~L~~~~ll~~~~~~---~~~mHdli~~~a~~~~~~~ 490 (890)
+++|+++||++....+ +|+||++||++++.+..++
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 99997446338963798118996689999987450678
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=325.49 Aligned_cols=286 Identities=16% Similarity=0.224 Sum_probs=227.9
Q ss_pred CCCCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCE-EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 7521327899999999415-996199999399872989999999630399999755-99999489779888999999881
Q 002704 155 PTMVGLQSQLEEVWRCLVE-EPVGIVGLYGMGGVGKTTLLTHINNKFLGSPTNFDL-VILVVVSKDLRLESIQEVIGEKI 232 (890)
Q Consensus 155 ~~~~Gr~~~~~~i~~~l~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~s~~~~~~~l~~~i~~~l 232 (890)
+..+||+.++++|.++|.+ +..++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH-HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87789289999999997435897189997699966799999999714-98874899389998289999999999999998
Q ss_pred CCCCCCC---------CCCCHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 6861000---------1459889999999981---697199999057874333333446889999983999942878787
Q 002704 233 GLLNETW---------KSRRIEQKALDIFRIL---RGKKFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVC 300 (890)
Q Consensus 233 ~~~~~~~---------~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~v~ 300 (890)
+...... ...+.+.+...+.+.+ .++|+||||||||+...|+.+. .||+||+|||++.++
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~--------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH--------SSCCEEEECSCSHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC--------CCEEEEEECCCHHHH
T ss_conf 622721022001346799999999999999998504788799871868189998647--------982999944373799
Q ss_pred HCCCCCCEEECC------CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC-CHHHHH
Q ss_conf 203477415338------9994657999998816875599900799999999680995049999998750599-966899
Q 002704 301 GLMEAHKKFKVQ------CLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMACKK-TPEEWS 373 (890)
Q Consensus 301 ~~~~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~~~G~Plai~~~~~~l~~~~-~~~~w~ 373 (890)
..+.....+.++ +|+.+|+|+||.+.+... . +++..++ |+|+||||+++|+.|+.+. +...|.
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC----H---HHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 866897089946865568969999999999974998----8---9999999---69899999999999848899799986
Q ss_pred HHHHHHHCCCCCCCCCCCCHHCHHHHHCCCCCCCHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 999998213688999975301047761039997023-4577645048998411678899998638975686665435669
Q 002704 374 YAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNDTI-RSCLLYCCLYPEDCCISKENLVDCWIGEGLLNGSVTLGSHEQG 452 (890)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~c~l~~~~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~~~ 452 (890)
.. ..+.+..++..||+.||++ . |.||++||+||+++.|+.+.++.+|+++| ++.+
T Consensus 349 ~~-------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedA 404 (1221)
T 1vt4_I 349 HV-------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDV 404 (1221)
T ss_dssp HC-------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHH
T ss_pred CC-------------CHHHHHHHHHHHHHHCCHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC----------HHHH
T ss_conf 69-------------8618999999999848899-9999999971779999877999998766778----------8999
Q ss_pred HHHHHHHHHHCCCCCC-CCCCEEEHHHHHHHH
Q ss_conf 8899999982113556-889378449999989
Q 002704 453 YHIVGILVQACLLEEV-DEDEVKMHDVIRDMA 483 (890)
Q Consensus 453 ~~~l~~L~~~~ll~~~-~~~~~~mHdli~~~a 483 (890)
..++++|+++||++.. ...+|+|||++++++
T Consensus 405 e~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf 99999999619889868999898609999985
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=294.25 Aligned_cols=307 Identities=21% Similarity=0.263 Sum_probs=234.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCC--CCCEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCC-CEEEEEEECCCCCHHHHHHHH
Q ss_conf 887521327899999999415--996199999399872989999999630399-9997-559999948977988899999
Q 002704 153 TEPTMVGLQSQLEEVWRCLVE--EPVGIVGLYGMGGVGKTTLLTHINNKFLGS-PTNF-DLVILVVVSKDLRLESIQEVI 228 (890)
Q Consensus 153 ~~~~~~Gr~~~~~~i~~~l~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~-~~~f-~~~~wv~~s~~~~~~~l~~~i 228 (890)
..+.||||+.+++++.+++.. ++.++|+|+|+||+||||||++++++. .. ..+| +.++|++++.. +...+...+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCH-HHHHHHCCCCEEEEECCCC-CHHHHHHHH
T ss_conf 98714052999999999986036888469997699898899999998355-6888528996599977877-668899999
Q ss_pred ---HHHHCCCC--CCCCCCCHHHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf ---98816861--000145988999999998169--71999990578743333334468899999839999428787872
Q 002704 229 ---GEKIGLLN--ETWKSRRIEQKALDIFRILRG--KKFVVLLDDIWQRVDLTKVGVPLPSSQTSASKVVFTTRSEEVCG 301 (890)
Q Consensus 229 ---~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~v~~ 301 (890)
+..++... ......+.+.....+...+.+ +++||||||+|+...+..+ +.+++||+|||+..++.
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH--------CCCCEEEEECCCCHHHH
T ss_conf 9999985035565567998899999999999706799869998589987999876--------37986999898817777
Q ss_pred CCCCCCEEEC---CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 0347741533---8999465799999881687559990079999999968099504999999875059996689999999
Q 002704 302 LMEAHKKFKV---QCLSGNDAWELFRQKVGEETLNCHPYILELAQTVTKECGGLPLALITIGRAMACKKTPEEWSYAIQV 378 (890)
Q Consensus 302 ~~~~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~l~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~~~~ 378 (890)
.+. ...+.+ ++|+.+++++||...++.... ...+.+.+|+++|+|+|||++.+|+.++.+ ...|...+..
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~----~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~ 344 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKA----DLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQ 344 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGG----GSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred HCC-CCCEEEECCCCCCHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHCCCCHHHHHHHHHHHCC--CHHHHHHHHH
T ss_conf 348-982686158899989999999987189831----045999999999589837999999998448--4359999999
Q ss_pred HHCCCCC-C----CCCCCCHHCHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 8213688-9----9997530104776103999702345776450489984116788999986389756866654356698
Q 002704 379 LRTSSSQ-F----PGLGNEVYPLLKFSYDNLPNDTIRSCLLYCCLYPEDCCISKENLVDCWIGEGLLNGSVTLGSHEQGY 453 (890)
Q Consensus 379 l~~~~~~-~----~~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~~~~ 453 (890)
+...... . ......+..++..||+.||++ .|.||+++|+||+++.|+...+...|.++ .+.+.
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~ 412 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVE 412 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH-HHHHHHHCCCCCCCCCCCHHHHHHHHCCC-----------HHHHH
T ss_conf 9886898765114654378999999999868999-99999974556799850899999996658-----------89999
Q ss_pred HHHHHHHHHCCCCCCC---CCCEEEHHHHHHHHHHHHH
Q ss_conf 8999999821135568---8937844999998999884
Q 002704 454 HIVGILVQACLLEEVD---EDEVKMHDVIRDMALWLAC 488 (890)
Q Consensus 454 ~~l~~L~~~~ll~~~~---~~~~~mHdli~~~a~~~~~ 488 (890)
.++++|++++|++... ..+|+||+++|++++....
T Consensus 413 ~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 99999985958688548985679976899999986535
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=202.27 Aligned_cols=324 Identities=15% Similarity=0.162 Sum_probs=210.2
Q ss_pred CCCCCCCEEEEECCCCCCCC------------------CCC-CC--CCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEE
Q ss_conf 64444312999833554333------------------567-78--8996018980168874223805540599774999
Q 002704 510 DVIEWEKLRRLSLMENQIEN------------------LSE-VP--TCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLN 568 (890)
Q Consensus 510 ~~~~~~~l~~l~l~~~~~~~------------------l~~-~~--~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~Lr~L~ 568 (890)
....+++++.|++++|.+.. +|. +. .+++|+.|++++|.....+|.. ++.+++|++|+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~ 521 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLN 521 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEE
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHH-HHCCCCCCEEE
T ss_conf 87569998789796886788746532233222222445874440255999778987189887527387-73799989998
Q ss_pred EECCCCCC--CCCCCCCCCC-------CCCEEECCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 20677873--1570113866-------79788656887643446--7723886978623687775544732316996574
Q 002704 569 LSRYMGLL--ELPSGISKLV-------SLEHLDLSTSLISEIPE--ELKALVNLKCLNLENTGLLLKIPLQLISHFSRLH 637 (890)
Q Consensus 569 Ls~~~~i~--~lp~~i~~L~-------~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~ip~~~i~~l~~L~ 637 (890)
+++|..++ .+|..++.+. +|++|++++|.+..+|. .++.+++|+.|++++|.. ..+| . ++.+++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~-~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-A-FGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-C-CCTTSEES
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCH-H-HCCCCCCE
T ss_conf 9689876566461778752330155688319982289477618723551589889898979982-5621-2-24798500
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC-CCEEEEEECCHHHHHHHHHHCC--------------------
Q ss_conf 8641377767668889875335887540788439888-7559999367044676541000--------------------
Q 002704 638 VLRMFGNGYFSCGLYPEDSVLFGGGELLVEELLGLKH-LEVLSLTLGSSRALQSFLNSHM-------------------- 696 (890)
Q Consensus 638 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~-------------------- 696 (890)
.|++++|.... .+..+..+++ |+.|+++.+....++.......
T Consensus 599 ~L~Ls~N~l~~----------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 599 DLKLDYNQIEE----------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp EEECCSSCCSC----------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred EEECCCCCCCC----------------CHHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 79871871250----------------35877525114989998499787476445225567778897708847886432
Q ss_pred --------CCCCCCEEEECCCCCCCEECCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCC--CCCCCCCCEEEEECCCC
Q ss_conf --------01122333643357982002367545457657986048996467744567533--34577635898824879
Q 002704 697 --------LRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQ--HFGFHSLQSFEVNFCSK 766 (890)
Q Consensus 697 --------~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~--~~~~~~L~~L~L~~c~~ 766 (890)
....|+.|.++++.-. .++...+..+++|+.|++++| .+..+|........ -..+++|+.|+|++| .
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~ 739 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-K 739 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-C
T ss_pred CHHHHCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCCCCCCCCEEECCCC-C
T ss_conf 000000135797688983199688-659788713898899989899-6885496784555334321487158988899-7
Q ss_pred CCCCCC-CC--CCCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCEECCCCCC------CCCCCCCCCCCCCCCCEEE
Q ss_conf 888983-24--44898768880373302352036325888867654431025545------5641158987899733884
Q 002704 767 LKDLTL-LV--LIPNLKYIAVTDCKAMEEIISVGEFAGNPNAFAKLQYLRIGNLP------NLKSIYLKPLPFPCLKKLT 837 (890)
Q Consensus 767 l~~l~~-l~--~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~f~~L~~L~l~~~~------~L~~l~~~~~~~~~L~~L~ 837 (890)
+..+|. +. .+++|+.|++++|. +..++. ....+++|+.|.+++++ -...++.....+++|+.|.
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNC-FSSFPT------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSC-CSSCCC------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred CCCCHHHHHHCCCCCCCEEEECCCC-CCCCCH------HHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf 8665277624427986989908997-876105------661599988998879977665632444868883699878898
Q ss_pred ECCCCCCCCCCCCCCCCCCCCEEEECCH
Q ss_conf 5076447788999975445626998311
Q 002704 838 VSDCYELKKLPLDSNSAKERKIVIRGAA 865 (890)
Q Consensus 838 i~~C~~L~~lp~~~~~~~~~~~~i~~~~ 865 (890)
+++|. +..+|.... ..++.+.+.+++
T Consensus 813 Ls~N~-L~~Ip~~l~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 813 IGSND-IRKVDEKLT-PQLYILDIADNP 838 (876)
T ss_dssp CCSSC-CCBCCSCCC-SSSCEEECCSCT
T ss_pred CCCCC-CCCCCHHHC-CCCCEEECCCCC
T ss_conf 87997-874087662-877889997998
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=200.64 Aligned_cols=339 Identities=14% Similarity=0.146 Sum_probs=146.8
Q ss_pred CCCCCCEEEEECCCCCCCC------------------CCC-CC--CCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEE
Q ss_conf 4444312999833554333------------------567-78--89960189801688742238055405997749992
Q 002704 511 VIEWEKLRRLSLMENQIEN------------------LSE-VP--TCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNL 569 (890)
Q Consensus 511 ~~~~~~l~~l~l~~~~~~~------------------l~~-~~--~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~Lr~L~L 569 (890)
...+++++.|++++|.+.. +|. +. .+++|++|++++|.....+|.. ++.+++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEEC
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHH-HHCCCCCCEEEC
T ss_conf 7256478789886882366423221222221001024863220044687888980488577628388-834999788978
Q ss_pred ECCCCCC--CCCCCCCCC------CCCCEEECCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEE
Q ss_conf 0677873--157011386------679788656887643446--772388697862368777554473231699657486
Q 002704 570 SRYMGLL--ELPSGISKL------VSLEHLDLSTSLISEIPE--ELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVL 639 (890)
Q Consensus 570 s~~~~i~--~lp~~i~~L------~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~ip~~~i~~l~~L~~L 639 (890)
++|..++ .+|..++.+ ++|++|++++|.+..+|. .++.+++|++|++++|...+.+| . ++.+++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEE
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-H-HCCCCCCCEE
T ss_conf 4798876653357887543046578888898979937766765554257888989690880705166-6-4788988989
Q ss_pred ECCCCCCCCCCC--------CCCCCCCCCCCCCCHHHHCC--CCCCCEEEEEECCHHHHH-HHHH----HCCCCCCCCEE
Q ss_conf 413777676688--------89875335887540788439--888755999936704467-6541----00001122333
Q 002704 640 RMFGNGYFSCGL--------YPEDSVLFGGGELLVEELLG--LKHLEVLSLTLGSSRALQ-SFLN----SHMLRSCTRAM 704 (890)
Q Consensus 640 ~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~-~~~~----~~~~~~~l~~L 704 (890)
++++|.....+. ..........-...+..+.. +++|+.|+++.+...... .... .......++.|
T Consensus 359 ~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp ECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred ECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEE
T ss_conf 89899403033756510236868985298275446655333457668897748857886524420022011258988889
Q ss_pred EECCCCCCCEECCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCC--CCCCCCCCEEEEECCCCCCCCCC-CC--CCCCC
Q ss_conf 643357982002367545457657986048996467744567533--34577635898824879888983-24--44898
Q 002704 705 LLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQ--HFGFHSLQSFEVNFCSKLKDLTL-LV--LIPNL 779 (890)
Q Consensus 705 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~--~~~~~~L~~L~L~~c~~l~~l~~-l~--~l~~L 779 (890)
.+.++.-. .++...+..+++|+.|++++| .++.+|........ ...+++|+.|++++| .++.+|. +. .+++|
T Consensus 439 ~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L 515 (636)
T 4eco_A 439 NLSNNQIS-KFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYL 515 (636)
T ss_dssp ECCSSCCC-SCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTC
T ss_pred ECCCCCCC-CCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCCCCCCCCEEECCCC-CCCCCCHHHHHCCCCCC
T ss_conf 77279668-678788715898898989799-7887397884044001221477338989699-38816854534458876
Q ss_pred CEEEEECCCCCHHHHCCCCCCCCCCCCCCCCEECCCCC------CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 76888037330235203632588886765443102554------556411589878997338845076447788999975
Q 002704 780 KYIAVTDCKAMEEIISVGEFAGNPNAFAKLQYLRIGNL------PNLKSIYLKPLPFPCLKKLTVSDCYELKKLPLDSNS 853 (890)
Q Consensus 780 ~~L~l~~c~~l~~l~~~~~~~~~~~~f~~L~~L~l~~~------~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~ 853 (890)
+.|++++|. ++.++. ....+++|+.|.+.++ .-...++.....+++|+.|.+++|. ++.+|....
T Consensus 516 ~~L~Ls~N~-l~~ip~------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~- 586 (636)
T 4eco_A 516 VGIDLSYNS-FSKFPT------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT- 586 (636)
T ss_dssp CEEECCSSC-CSSCCC------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC-
T ss_pred CEEECCCCC-CCCCCH------HHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCC-CCCCCHHHH-
T ss_conf 989898998-877682------35308887878898886656673121273778569987889898994-770597683-
Q ss_pred CCCCCEEEECC
Q ss_conf 44562699831
Q 002704 854 AKERKIVIRGA 864 (890)
Q Consensus 854 ~~~~~~~i~~~ 864 (890)
..++.+.+.++
T Consensus 587 ~~L~~L~Ls~N 597 (636)
T 4eco_A 587 PNISVLDIKDN 597 (636)
T ss_dssp TTCCEEECCSC
T ss_pred CCCCEEECCCC
T ss_conf 86789987699
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=194.06 Aligned_cols=306 Identities=20% Similarity=0.178 Sum_probs=148.2
Q ss_pred CCCEEEEECCCCCCCC-CC-CCCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4312999833554333-56-778899601898016887422380554059977499920677873157011386679788
Q 002704 514 WEKLRRLSLMENQIEN-LS-EVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEHL 591 (890)
Q Consensus 514 ~~~l~~l~l~~~~~~~-l~-~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L 591 (890)
++.++.+.+.+|.+.. ++ .+..+++|+.|++++|.....+|.. +..+++|++|++++|.....+|..++.+++|++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH-HHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEE
T ss_conf 477618989778465424877756898798989588466854677-7449988989897881547189788287773299
Q ss_pred ECCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf 65688764-34467723886978623687775544732316996574864137776766888987533588754078843
Q 002704 592 DLSTSLIS-EIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELL 670 (890)
Q Consensus 592 ~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~ip~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 670 (890)
++++|.+. .+|..+..+++|+.|++++|...+.+|.. ++.+++|++|++.+|... ...+..+.
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~---------------~~~p~~l~ 535 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFS---------------GNIPAELG 535 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCE---------------EECCGGGG
T ss_pred EECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH-HHCCCCCCEEECCCCCCC---------------CCCCHHHC
T ss_conf 90199513758878816998998975399518968768-856899998989789433---------------74887770
Q ss_pred CCCCCCEEEEEECCHH-HHHHHHHHCC------CCCCCCEEEECCC---------------CCC----------------
Q ss_conf 9888755999936704-4676541000------0112233364335---------------798----------------
Q 002704 671 GLKHLEVLSLTLGSSR-ALQSFLNSHM------LRSCTRAMLLQDF---------------KGS---------------- 712 (890)
Q Consensus 671 ~l~~L~~L~l~~~~~~-~~~~~~~~~~------~~~~l~~L~l~~~---------------~~~---------------- 712 (890)
.+++|+.|+++.+... .++....... .....+...+... .+.
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 88989989898884688279578604212232013454211113444322223322210013556323200232110011
Q ss_pred -----CEECCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCCCCCEEEEEC
Q ss_conf -----200236754545765798604899646774456753334577635898824879888983-24448987688803
Q 002704 713 -----TMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVNFCSKLKDLTL-LVLIPNLKYIAVTD 786 (890)
Q Consensus 713 -----~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~l~~ 786 (890)
.......+..+++|+.|++++|.-...+|..+. .+++|+.|+|++|.....+|. ++.+++|+.|++++
T Consensus 616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~------~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG------SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHH------CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf 33100462743340335665797858801555877884------141578784868803887896784777899898978
Q ss_pred CCCCHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 733023520363258888676544310255455641158987899733884507644778899
Q 002704 787 CKAMEEIISVGEFAGNPNAFAKLQYLRIGNLPNLKSIYLKPLPFPCLKKLTVSDCYELKKLPL 849 (890)
Q Consensus 787 c~~l~~l~~~~~~~~~~~~f~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 849 (890)
|...+.+|. ....+++|+.|+++++.--..+|. ...|.++....+.+++.|--.|.
T Consensus 690 N~l~g~ip~------~l~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~l 745 (768)
T 3rgz_A 690 NKLDGRIPQ------AMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPL 745 (768)
T ss_dssp SCCEECCCG------GGGGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTTS
T ss_pred CCCCCCCCH------HHHCCCCCCEEECCCCCCCCCCCC-CHHHCCCCHHHHCCCCHHCCCCC
T ss_conf 802386886------775788789787968815560899-60102489777569832108877
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=1.00 E-value=1 Score=193.63 Aligned_cols=289 Identities=18% Similarity=0.221 Sum_probs=162.7
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 44443129998335543335677889960189801688742238055405997749992067787315701138667978
Q 002704 511 VIEWEKLRRLSLMENQIENLSEVPTCPHLLTLFLNNDGLLRIINSDFLQSMPSLKVLNLSRYMGLLELPSGISKLVSLEH 590 (890)
Q Consensus 511 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~Lr~L~L~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~ 590 (890)
...+++++.+.+.++.+..++.+..+++|++|++++|... .++. +..+++|++|+++ ++.++.+| .+..+++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~-~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIG-TNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECC-SSCCCCCG-GGTTCTTCSE
T ss_pred CHHCCCCCEEEEECCCCCCCHHHHHCCCCCEEECCCCCCC-CCHH--HHCCCCCCEEECC-CCCCCCCH-HHCCCCCCCE
T ss_conf 0010344689985886446355530488658976598445-6444--4068868889843-88656706-7707885788
Q ss_pred EECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf 86568876434467723886978623687775544732316996574864137776766888987533588754078843
Q 002704 591 LDLSTSLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSRLHVLRMFGNGYFSCGLYPEDSVLFGGGELLVEELL 670 (890)
Q Consensus 591 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~ip~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 670 (890)
|++++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++.+|.... ...+.
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~-----------------~~~~~ 174 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD-----------------VTPIA 174 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC-----------------CGGGG
T ss_pred EECCCCCCCCCHH-HCCCCCEEEEECCCCCCCCCCCC--HHHCCCCCEEEECCCCCCC-----------------CHHHC
T ss_conf 8886885667630-24687601897779987443601--2317877478816888677-----------------61002
Q ss_pred CCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEECCCCCCCEECCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCC
Q ss_conf 98887559999367044676541000011223336433579820023675454576579860489964677445675333
Q 002704 671 GLKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSGLANLKQLKRLRISDCYELVELKIDYAGEVQH 750 (890)
Q Consensus 671 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 750 (890)
.+++|+.|+++.+.......+ .....++.+.+.++.-..... +..+++|+.|++++| .++.++. +
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n-~l~~~~~-~------ 239 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISPL----ASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNN-KITDLSP-L------ 239 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGGG----GGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCCGG-G------
T ss_pred CCCCCCEEECCCCCCCCCCCC----CCCCCCCEEECCCCCCCCCCH---HHCCCCCCEEECCCC-CCCCCCC-H------
T ss_conf 478788898149856654031----677752066122477778853---444786897985598-5678722-2------
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 45776358988248798889832444898768880373302352036325888867654431025545564115898789
Q 002704 751 FGFHSLQSFEVNFCSKLKDLTLLVLIPNLKYIAVTDCKAMEEIISVGEFAGNPNAFAKLQYLRIGNLPNLKSIYLKPLPF 830 (890)
Q Consensus 751 ~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~f~~L~~L~l~~~~~L~~l~~~~~~~ 830 (890)
..+++|+.|++++| .++.++.+..+++|++|.+++|. ++.++ ....+++|+.|.+.++.--...+.....+
T Consensus 240 ~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 240 ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS-------VLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-------GGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred HCCCCCCEEECCCC-CCCCCHHHHCCCCCCEEECCCCC-CCCCH-------HHCCCCCCCEEECCCCCCCCCCHHHHHCC
T ss_conf 01888898979887-55878567168976789802985-68885-------45589988889776996877596676266
Q ss_pred CCCCEEEECCCCCCCCCCC
Q ss_conf 9733884507644778899
Q 002704 831 PCLKKLTVSDCYELKKLPL 849 (890)
Q Consensus 831 ~~L~~L~i~~C~~L~~lp~ 849 (890)
++|+.|.+++|+ ++.++.
T Consensus 311 ~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 311 TNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp TTCSEEECCSSS-CCCCGG
T ss_pred CCCCEEECCCCC-CCCCCC
T ss_conf 668789754974-456607
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=190.88 Aligned_cols=331 Identities=16% Similarity=0.194 Sum_probs=221.1
Q ss_pred CCCCEEEEECCCCCCCC-CC-CCCCCCCCEEEEECCCC-CCC-CCCHHHHCC-------CCCCCEEEEECCCCCCCCCC-
Q ss_conf 44312999833554333-56-77889960189801688-742-238055405-------99774999206778731570-
Q 002704 513 EWEKLRRLSLMENQIEN-LS-EVPTCPHLLTLFLNNDG-LLR-IINSDFLQS-------MPSLKVLNLSRYMGLLELPS- 580 (890)
Q Consensus 513 ~~~~l~~l~l~~~~~~~-l~-~~~~~~~Lr~L~L~~~~-~~~-~~~~~~~~~-------l~~Lr~L~Ls~~~~i~~lp~- 580 (890)
.+++++.|.+.+|.+.. +| .+..+++|+.|++++|. ... .+|.. ++. +++|++|+++ ++.+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls-~N~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMG-YNNLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECC-SSCCCBCCCH
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHH-HHHHHHCCCCCCCCCEEEEE-CCCCCCCCCH
T ss_conf 599977898718988752738773799989998968987656646177-87523301556883199822-8947761872
Q ss_pred -CCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC-CCEEECCCCCCCCCCCCCC-CC-
Q ss_conf -1138667978865688764344677238869786236877755447323169965-7486413777676688898-75-
Q 002704 581 -GISKLVSLEHLDLSTSLISEIPEELKALVNLKCLNLENTGLLLKIPLQLISHFSR-LHVLRMFGNGYFSCGLYPE-DS- 656 (890)
Q Consensus 581 -~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~ip~~~i~~l~~-L~~L~l~~~~~~~~~~~~~-~~- 656 (890)
.++++++|++|++++|.+..+| .++.+++|+.|++++|. +..+|.. +..+++ |++|++++|.....+.... ..
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~ 643 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCS
T ss_pred HHHHCCCCCCEEECCCCCCCCCH-HHCCCCCCEEEECCCCC-CCCCHHH-HHHCCCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf 35515898898989799825621-22479850079871871-2503587-752511498999849978747644522556
Q ss_pred ----C---CCCC-C---CCCHHHHC--CCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEECCCCCCCEECCCC----
Q ss_conf ----3---3588-7---54078843--9888755999936704467654100001122333643357982002367----
Q 002704 657 ----V---LFGG-G---ELLVEELL--GLKHLEVLSLTLGSSRALQSFLNSHMLRSCTRAMLLQDFKGSTMVDVSG---- 719 (890)
Q Consensus 657 ----~---~~~~-~---~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~---- 719 (890)
. .... . ......+. .+++|+.|+++.+....++.... ...+.|+.|.++++.-. .++...
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~--~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF--ATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH--HTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred CCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCCHHHH--CCCCCCCEEECCCCCCC-CCCHHHHCCC
T ss_conf 77788977088478864320000001357976889831996886597887--13898899989899688-5496784555
Q ss_pred ---CCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCEEEEECCC------C
Q ss_conf ---5454576579860489964677445675333457763589882487988898-32444898768880373------3
Q 002704 720 ---LANLKQLKRLRISDCYELVELKIDYAGEVQHFGFHSLQSFEVNFCSKLKDLT-LLVLIPNLKYIAVTDCK------A 789 (890)
Q Consensus 720 ---l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~------~ 789 (890)
+.++++|+.|++++| .+..+|..+. ...+++|+.|+|++| .+..+| .+..+++|+.|.+++|. .
T Consensus 721 ~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~----~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFN-KLTSLSDDFR----ATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp TSCCTTGGGCCEEECCSS-CCCCCCGGGS----TTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred CCCCCCCCCCCEEECCCC-CCCCCHHHHH----HCCCCCCCEEEECCC-CCCCCCHHHHCCCCCCEEECCCCCCCCCCCC
T ss_conf 334321487158988899-7866527762----442798698990899-7876105661599988998879977665632
Q ss_pred CHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC----------CCCCCE
Q ss_conf 0235203632588886765443102554556411589878997338845076447788999975----------445626
Q 002704 790 MEEIISVGEFAGNPNAFAKLQYLRIGNLPNLKSIYLKPLPFPCLKKLTVSDCYELKKLPLDSNS----------AKERKI 859 (890)
Q Consensus 790 l~~l~~~~~~~~~~~~f~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~----------~~~~~~ 859 (890)
.+.++. ....+++|+.|.++++ .+..++... +++|+.|++++|+ +..+...... ......
T Consensus 795 ~~~ip~------~l~~L~~L~~L~Ls~N-~L~~Ip~~l--~~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 795 LRQWPT------GITTCPSLIQLQIGSN-DIRKVDEKL--TPQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CCCCCT------TGGGCSSCCEEECCSS-CCCBCCSCC--CSSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCCCHH------HHHCCCCCCEEECCCC-CCCCCCHHH--CCCCCEEECCCCC-CCCCCHHHCCCCCCCHHEEECCCCCC
T ss_conf 444868------8836998788988799-787408766--2877889997998-88117677256542311034688865
Q ss_pred EEECCHHH
Q ss_conf 99831100
Q 002704 860 VIRGAANW 867 (890)
Q Consensus 860 ~i~~~~~~ 867 (890)
.|.+|+.+
T Consensus 865 ~I~gC~~L 872 (876)
T 4ecn_A 865 DIRGCDAL 872 (876)
T ss_dssp EEESCGGG
T ss_pred CCCCCCCC
T ss_conf 53799875
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=190.50 Aligned_cols=111 Identities=9% Similarity=0.000 Sum_probs=71.3
Q ss_pred CCCCCCEEEEECCCCCCCCCC-CCCCCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 577635898824879888983-2444898768880373302352036325888867654431025545564115898789
Q 002704 752 GFHSLQSFEVNFCSKLKDLTL-LVLIPNLKYIAVTDCKAMEEIISVGEFAGNPNAFAKLQYLRIGNLPNLKSIYLKPLPF 830 (890)
Q Consensus 752 ~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~f~~L~~L~l~~~~~L~~l~~~~~~~ 830 (890)
.+++|+.|++++|.....+|. ++.+++|+.|++++|...+.+|. ....+++|+.|+++++.--..++.....+
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~------~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD------EVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG------GGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH------HHHCCCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 335665797858801555877884141578784868803887896------78477789989897880238688677578
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHH
Q ss_conf 97338845076447788999975445626998311001
Q 002704 831 PCLKKLTVSDCYELKKLPLDSNSAKERKIVIRGAANWW 868 (890)
Q Consensus 831 ~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~i~~~~~~~ 868 (890)
++|+.|.+++++--..+|............+.|++.++
T Consensus 704 ~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp CCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEE
T ss_pred CCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHC
T ss_conf 87897879688155608996010248977756983210
Done!