Query 002705
Match_columns 890
No_of_seqs 451 out of 2509
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:28:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02727 NAD kinase 100.0 4E-220 8E-225 1901.8 62.6 862 7-890 1-878 (986)
2 KOG2178 Predicted sugar kinase 100.0 2.1E-40 4.5E-45 361.3 17.3 225 661-890 65-301 (409)
3 PLN02935 Bifunctional NADH kin 100.0 4.7E-40 1E-44 371.7 20.4 214 672-890 176-395 (508)
4 PRK14077 pnk inorganic polypho 100.0 1.1E-38 2.4E-43 343.5 21.5 184 689-890 9-192 (287)
5 PRK03372 ppnK inorganic polyph 100.0 4.3E-38 9.4E-43 341.4 21.9 194 688-890 3-200 (306)
6 PRK04539 ppnK inorganic polyph 100.0 5.6E-38 1.2E-42 339.3 19.7 190 687-890 2-196 (296)
7 PRK02649 ppnK inorganic polyph 100.0 1.8E-37 4E-42 336.5 20.4 191 691-890 2-196 (305)
8 PRK01911 ppnK inorganic polyph 100.0 3.3E-37 7.2E-42 332.8 20.3 188 692-890 2-191 (292)
9 PRK03378 ppnK inorganic polyph 100.0 7.3E-37 1.6E-41 330.2 21.9 188 688-890 3-191 (292)
10 PRK02155 ppnK NAD(+)/NADH kina 100.0 1.6E-36 3.5E-41 327.4 21.3 189 687-890 2-191 (291)
11 PRK14076 pnk inorganic polypho 100.0 9.9E-36 2.1E-40 346.7 22.1 190 685-890 285-476 (569)
12 PRK01231 ppnK inorganic polyph 100.0 2.5E-35 5.4E-40 318.7 22.5 186 690-890 4-190 (295)
13 PRK01185 ppnK inorganic polyph 100.0 5.3E-35 1.1E-39 312.7 21.1 171 692-890 2-173 (271)
14 PRK02231 ppnK inorganic polyph 100.0 4.7E-35 1E-39 313.2 18.9 169 707-890 2-171 (272)
15 PRK04885 ppnK inorganic polyph 100.0 6.7E-35 1.4E-39 311.1 19.0 160 692-890 2-163 (265)
16 PRK03501 ppnK inorganic polyph 100.0 3.5E-34 7.5E-39 305.4 19.8 159 692-890 4-164 (264)
17 COG0061 nadF NAD kinase [Coenz 100.0 1.4E-33 3E-38 303.2 21.5 180 691-890 1-181 (281)
18 PRK03708 ppnK inorganic polyph 100.0 1.5E-33 3.3E-38 302.4 21.2 177 692-890 2-180 (277)
19 PRK02645 ppnK inorganic polyph 100.0 1.9E-32 4.2E-37 297.5 20.9 181 690-890 3-194 (305)
20 PF01513 NAD_kinase: ATP-NAD k 100.0 5.3E-33 1.2E-37 298.6 15.9 192 692-890 1-206 (285)
21 PRK14075 pnk inorganic polypho 100.0 2E-32 4.4E-37 290.8 20.0 160 692-890 2-161 (256)
22 PRK00561 ppnK inorganic polyph 100.0 3.1E-31 6.6E-36 281.9 17.9 150 692-890 2-152 (259)
23 PLN02929 NADH kinase 100.0 2.7E-30 5.8E-35 279.3 17.4 159 701-890 30-211 (301)
24 PRK04761 ppnK inorganic polyph 100.0 1.5E-28 3.2E-33 259.8 13.8 124 754-890 24-149 (246)
25 PF13350 Y_phosphatase3: Tyros 99.9 2.2E-22 4.9E-27 199.6 10.8 132 241-387 1-164 (164)
26 PF03162 Y_phosphatase2: Tyros 99.8 2.1E-20 4.7E-25 187.2 12.3 122 245-385 4-129 (164)
27 TIGR01244 conserved hypothetic 99.8 1E-19 2.2E-24 176.5 14.2 114 266-383 6-121 (135)
28 PF04273 DUF442: Putative phos 99.7 7.4E-18 1.6E-22 159.0 10.6 101 266-370 6-108 (110)
29 COG3453 Uncharacterized protei 99.7 9.8E-16 2.1E-20 145.1 12.4 112 266-381 7-120 (130)
30 KOG4180 Predicted kinase [Gene 99.6 4.2E-15 9.1E-20 159.9 10.4 132 753-889 103-273 (395)
31 smart00195 DSPc Dual specifici 99.5 2.4E-13 5.2E-18 130.2 13.4 116 267-393 6-125 (138)
32 KOG1572 Predicted protein tyro 99.5 1.3E-13 2.7E-18 144.1 11.8 125 245-388 57-189 (249)
33 COG2365 Protein tyrosine/serin 99.5 6.5E-14 1.4E-18 149.1 6.7 166 267-433 53-246 (249)
34 cd00127 DSPc Dual specificity 99.4 1.3E-12 2.8E-17 124.3 13.1 118 267-393 7-128 (139)
35 PTZ00393 protein tyrosine phos 99.3 2.1E-11 4.6E-16 128.8 12.4 105 277-389 106-212 (241)
36 PTZ00242 protein tyrosine phos 99.3 4.2E-11 9E-16 120.6 13.2 113 268-388 17-140 (166)
37 PF00782 DSPc: Dual specificit 99.2 2.8E-11 6E-16 115.0 7.9 116 269-393 1-120 (133)
38 PF05706 CDKN3: Cyclin-depende 99.2 3.1E-11 6.8E-16 121.4 8.2 103 277-380 61-168 (168)
39 PRK12361 hypothetical protein; 99.2 2.6E-10 5.5E-15 133.6 15.6 121 267-394 100-224 (547)
40 KOG1720 Protein tyrosine phosp 98.8 2.9E-08 6.3E-13 102.9 9.4 94 280-381 87-182 (225)
41 TIGR00147 lipid kinase, YegS/R 98.6 1.6E-07 3.5E-12 101.3 8.6 109 691-812 2-118 (293)
42 PF14566 PTPlike_phytase: Inos 98.3 1.2E-06 2.7E-11 86.9 7.1 61 308-368 84-145 (149)
43 KOG2836 Protein tyrosine phosp 98.3 4.5E-06 9.9E-11 81.6 10.2 106 268-381 18-131 (173)
44 KOG1719 Dual specificity phosp 98.2 7.8E-06 1.7E-10 81.7 9.5 99 278-381 42-144 (183)
45 COG2453 CDC14 Predicted protei 98.2 5E-06 1.1E-10 84.8 8.1 76 312-387 68-147 (180)
46 KOG1716 Dual specificity phosp 97.9 9.2E-05 2E-09 80.8 12.6 119 266-393 79-202 (285)
47 KOG1718 Dual specificity phosp 97.8 0.00011 2.4E-09 74.7 10.3 103 267-380 22-128 (198)
48 smart00404 PTPc_motif Protein 97.8 3.3E-05 7.1E-10 69.3 5.5 53 319-371 5-63 (105)
49 smart00012 PTPc_DSPc Protein t 97.8 3.3E-05 7.1E-10 69.3 5.5 53 319-371 5-63 (105)
50 KOG1717 Dual specificity phosp 97.8 0.00011 2.3E-09 79.2 9.6 107 266-381 176-286 (343)
51 PRK13057 putative lipid kinase 97.1 0.001 2.2E-08 72.2 7.5 104 695-812 2-109 (287)
52 cd00047 PTPc Protein tyrosine 96.9 0.0032 6.9E-08 65.8 8.2 53 332-384 147-209 (231)
53 PRK00861 putative lipid kinase 96.8 0.0057 1.2E-07 66.8 9.4 109 690-813 2-117 (300)
54 PRK11914 diacylglycerol kinase 96.7 0.0088 1.9E-07 65.5 10.7 111 689-813 7-125 (306)
55 smart00194 PTPc Protein tyrosi 96.7 0.0064 1.4E-07 64.8 9.1 53 331-383 174-235 (258)
56 COG5599 PTP2 Protein tyrosine 96.3 0.0032 7E-08 68.2 3.5 42 327-368 196-239 (302)
57 PRK13054 lipid kinase; Reviewe 96.3 0.013 2.8E-07 64.2 8.2 109 689-813 2-120 (300)
58 KOG2283 Clathrin coat dissocia 96.2 0.0062 1.4E-07 70.5 5.7 98 280-387 44-149 (434)
59 PRK13055 putative lipid kinase 96.1 0.043 9.2E-07 61.3 11.2 106 691-812 3-121 (334)
60 PHA02740 protein tyrosine phos 95.9 0.014 3E-07 64.6 6.4 23 346-368 220-242 (298)
61 PLN02727 NAD kinase 95.9 0.015 3.2E-07 72.1 7.2 180 424-610 409-614 (986)
62 PRK13059 putative lipid kinase 95.9 0.04 8.6E-07 60.4 9.7 108 691-812 2-117 (295)
63 PHA02742 protein tyrosine phos 95.7 0.016 3.5E-07 64.0 5.8 22 347-368 229-250 (303)
64 COG3199 Predicted inorganic po 95.5 0.021 4.5E-07 64.1 5.8 59 755-814 100-160 (355)
65 PRK12361 hypothetical protein; 95.5 0.055 1.2E-06 64.3 9.6 109 690-813 242-361 (547)
66 PRK13337 putative lipid kinase 95.5 0.077 1.7E-06 58.3 10.1 106 691-812 2-118 (304)
67 PRK15375 pathogenicity island 95.4 0.076 1.7E-06 62.5 10.2 65 331-396 439-518 (535)
68 PHA02747 protein tyrosine phos 95.3 0.019 4.2E-07 63.8 4.7 21 348-368 230-250 (312)
69 PF00781 DAGK_cat: Diacylglyce 95.1 0.072 1.6E-06 51.2 7.4 87 692-794 1-97 (130)
70 PF00102 Y_phosphatase: Protei 94.9 0.045 9.7E-07 56.3 5.9 40 331-370 151-193 (235)
71 PHA02746 protein tyrosine phos 94.9 0.044 9.6E-07 61.3 6.2 21 348-368 248-268 (323)
72 TIGR03702 lip_kinase_YegS lipi 94.8 0.11 2.4E-06 56.8 8.9 105 692-812 1-115 (293)
73 PHA02738 hypothetical protein; 94.8 0.034 7.4E-07 62.1 5.0 22 347-368 227-248 (320)
74 PLN02958 diacylglycerol kinase 94.8 0.15 3.2E-06 60.2 10.4 113 684-813 105-239 (481)
75 PLN02160 thiosulfate sulfurtra 94.5 0.17 3.6E-06 49.8 8.4 86 275-374 17-106 (136)
76 PF13348 Y_phosphatase3C: Tyro 94.1 0.013 2.9E-07 50.6 -0.1 43 396-438 25-67 (68)
77 cd01523 RHOD_Lact_B Member of 94.1 0.17 3.6E-06 46.1 7.1 85 276-375 2-87 (100)
78 smart00046 DAGKc Diacylglycero 93.9 0.19 4.1E-06 48.4 7.4 35 755-789 49-88 (124)
79 PLN02204 diacylglycerol kinase 93.6 0.49 1.1E-05 57.2 11.4 112 650-774 106-237 (601)
80 cd01518 RHOD_YceA Member of th 93.5 0.3 6.6E-06 44.6 7.6 85 274-375 3-87 (101)
81 KOG2386 mRNA capping enzyme, g 93.4 0.093 2E-06 60.2 4.8 103 275-383 48-161 (393)
82 COG1597 LCB5 Sphingosine kinas 93.2 0.53 1.1E-05 52.3 10.3 111 690-812 2-119 (301)
83 cd01533 4RHOD_Repeat_2 Member 93.1 0.55 1.2E-05 43.5 8.7 80 274-374 11-91 (109)
84 KOG0792 Protein tyrosine phosp 92.9 0.14 3E-06 64.2 5.7 36 332-367 1045-1083(1144)
85 KOG0793 Protein tyrosine phosp 92.9 1.4 3.1E-05 53.5 13.6 49 333-381 910-965 (1004)
86 COG5350 Predicted protein tyro 92.6 0.56 1.2E-05 47.7 8.4 106 285-393 30-141 (172)
87 KOG0791 Protein tyrosine phosp 92.3 0.17 3.7E-06 57.3 5.0 46 325-370 261-310 (374)
88 cd01448 TST_Repeat_1 Thiosulfa 92.3 0.63 1.4E-05 43.8 8.1 95 276-375 3-106 (122)
89 KOG0789 Protein tyrosine phosp 91.7 0.25 5.5E-06 55.9 5.5 23 346-368 298-320 (415)
90 COG0607 PspE Rhodanese-related 89.9 1 2.2E-05 41.0 6.8 77 277-374 9-86 (110)
91 cd01519 RHOD_HSP67B2 Member of 89.5 1.1 2.5E-05 40.7 6.8 86 276-374 2-91 (106)
92 KOG0790 Protein tyrosine phosp 89.2 0.3 6.6E-06 56.5 3.3 32 332-363 431-467 (600)
93 PRK01415 hypothetical protein; 88.4 4.2 9.2E-05 44.4 11.2 168 181-374 15-196 (247)
94 cd01449 TST_Repeat_2 Thiosulfa 87.7 1.3 2.9E-05 41.2 6.1 95 276-375 2-104 (118)
95 KOG1530 Rhodanese-related sulf 87.2 1.8 3.9E-05 43.1 6.8 82 276-370 26-111 (136)
96 cd01528 RHOD_2 Member of the R 87.2 3 6.6E-05 38.0 8.0 81 274-375 1-84 (101)
97 PF00581 Rhodanese: Rhodanese- 86.5 2.8 6.1E-05 37.9 7.4 80 276-367 1-86 (113)
98 cd01520 RHOD_YbbB Member of th 86.5 2.7 5.7E-05 40.5 7.6 86 275-374 1-112 (128)
99 cd01444 GlpE_ST GlpE sulfurtra 86.3 2.8 6.2E-05 37.3 7.2 79 275-374 2-81 (96)
100 cd01524 RHOD_Pyr_redox Member 85.2 4.1 8.9E-05 36.4 7.7 75 276-374 2-76 (90)
101 TIGR02483 PFK_mixed phosphofru 85.0 0.7 1.5E-05 52.1 3.2 54 754-810 93-156 (324)
102 cd01522 RHOD_1 Member of the R 85.0 5.7 0.00012 37.6 8.9 86 275-374 1-89 (117)
103 cd01527 RHOD_YgaP Member of th 84.8 2.3 5E-05 38.5 5.9 77 274-374 3-79 (99)
104 cd01534 4RHOD_Repeat_3 Member 84.5 6.3 0.00014 35.6 8.6 78 276-374 2-81 (95)
105 KOG4228 Protein tyrosine phosp 84.3 0.46 1E-05 60.1 1.5 32 332-363 712-746 (1087)
106 cd01526 RHOD_ThiF Member of th 84.2 2.4 5.1E-05 40.3 6.0 86 274-374 9-97 (122)
107 PRK06895 putative anthranilate 83.5 2.6 5.7E-05 43.4 6.4 75 691-789 2-82 (190)
108 KOG4471 Phosphatidylinositol 3 83.4 1.2 2.6E-05 53.3 4.3 27 344-370 371-397 (717)
109 cd01530 Cdc25 Cdc25 phosphatas 83.4 5 0.00011 38.5 7.8 25 345-370 66-91 (121)
110 PRK14071 6-phosphofructokinase 82.9 1.1 2.5E-05 51.1 3.8 54 755-810 107-170 (360)
111 PRK00162 glpE thiosulfate sulf 80.1 5.6 0.00012 36.8 6.7 78 274-374 6-83 (108)
112 TIGR02482 PFKA_ATP 6-phosphofr 79.3 1.6 3.6E-05 48.7 3.4 54 754-809 90-153 (301)
113 KOG4435 Predicted lipid kinase 79.0 5 0.00011 46.5 7.0 23 752-774 113-135 (535)
114 PF06602 Myotub-related: Myotu 78.7 2.5 5.4E-05 48.2 4.6 31 339-370 224-254 (353)
115 PRK10287 thiosulfate:cyanide s 78.5 5.7 0.00012 37.6 6.3 66 288-374 20-85 (104)
116 PRK06186 hypothetical protein; 78.3 4.6 9.9E-05 43.7 6.2 36 753-788 51-91 (229)
117 PRK05600 thiamine biosynthesis 78.1 4.1 8.8E-05 46.8 6.1 85 274-374 272-357 (370)
118 TIGR00566 trpG_papA glutamine 77.8 3.7 8E-05 42.4 5.2 73 693-788 2-81 (188)
119 PRK06555 pyrophosphate--fructo 77.7 2.1 4.5E-05 49.8 3.7 54 755-810 112-180 (403)
120 TIGR02981 phageshock_pspE phag 77.5 8.2 0.00018 36.2 7.0 68 286-374 16-83 (101)
121 PRK07765 para-aminobenzoate sy 77.4 5.2 0.00011 42.4 6.3 78 692-788 2-85 (214)
122 PTZ00286 6-phospho-1-fructokin 76.3 2.3 5.1E-05 50.2 3.7 124 683-809 80-243 (459)
123 cd00763 Bacterial_PFK Phosphof 76.0 2.6 5.6E-05 47.5 3.8 53 754-809 91-153 (317)
124 PRK00142 putative rhodanese-re 75.2 7.7 0.00017 43.6 7.2 87 271-374 110-196 (314)
125 PRK14072 6-phosphofructokinase 75.0 2.6 5.6E-05 49.1 3.6 53 754-808 102-169 (416)
126 PRK11784 tRNA 2-selenouridine 74.5 11 0.00025 42.9 8.4 27 346-374 87-114 (345)
127 PRK06774 para-aminobenzoate sy 74.5 4.5 9.7E-05 41.7 4.8 73 693-788 2-81 (191)
128 CHL00101 trpG anthranilate syn 74.5 5.5 0.00012 41.2 5.4 74 693-788 2-81 (190)
129 PRK05320 rhodanese superfamily 74.1 7.5 0.00016 42.5 6.6 173 182-374 14-200 (257)
130 PRK06830 diphosphate--fructose 74.0 2.9 6.3E-05 49.2 3.6 124 683-809 73-239 (443)
131 cd01525 RHOD_Kc Member of the 73.3 6.6 0.00014 35.8 5.1 86 275-374 1-90 (105)
132 PLN02564 6-phosphofructokinase 72.5 3.3 7.2E-05 49.2 3.6 124 683-809 80-243 (484)
133 COG0205 PfkA 6-phosphofructoki 71.2 3.6 7.7E-05 47.0 3.4 118 689-809 1-156 (347)
134 PRK05670 anthranilate synthase 70.2 7.9 0.00017 39.8 5.4 74 693-788 2-81 (189)
135 cd01529 4RHOD_Repeats Member o 69.2 9 0.00019 34.6 5.0 29 345-375 54-82 (96)
136 PLN02884 6-phosphofructokinase 68.9 3.7 8E-05 47.9 3.0 123 683-809 46-210 (411)
137 PRK03202 6-phosphofructokinase 68.6 4.8 0.0001 45.4 3.7 53 754-809 92-154 (320)
138 KOG0782 Predicted diacylglycer 68.4 13 0.00027 44.8 7.0 66 759-829 420-496 (1004)
139 PRK10310 PTS system galactitol 68.4 36 0.00079 31.6 8.9 91 691-811 3-94 (94)
140 PRK07053 glutamine amidotransf 68.0 13 0.00028 40.1 6.6 80 690-789 2-93 (234)
141 PF00365 PFK: Phosphofructokin 68.0 2.3 5.1E-05 47.0 1.1 116 691-809 1-154 (282)
142 smart00450 RHOD Rhodanese Homo 67.7 26 0.00056 30.4 7.5 29 345-375 54-82 (100)
143 cd08194 Fe-ADH6 Iron-containin 66.7 15 0.00032 41.9 7.2 88 690-787 23-130 (375)
144 TIGR03865 PQQ_CXXCW PQQ-depend 66.3 37 0.0008 34.5 9.2 97 274-374 37-142 (162)
145 PRK08857 para-aminobenzoate sy 65.5 11 0.00024 39.0 5.4 73 693-788 2-81 (193)
146 cd00363 PFK Phosphofructokinas 65.1 4.8 0.0001 45.7 2.9 55 754-810 91-160 (338)
147 cd01447 Polysulfide_ST Polysul 64.2 36 0.00078 30.6 7.9 28 345-374 59-86 (103)
148 PRK06490 glutamine amidotransf 63.2 14 0.00029 40.0 5.7 79 690-788 7-95 (239)
149 PF04179 Init_tRNA_PT: Initiat 62.5 24 0.00051 41.9 7.9 72 286-366 317-395 (451)
150 cd01443 Cdc25_Acr2p Cdc25 enzy 61.2 34 0.00073 32.0 7.3 75 275-365 4-84 (113)
151 cd08176 LPO Lactadehyde:propan 61.0 19 0.0004 41.2 6.6 76 690-775 28-104 (377)
152 PLN02723 3-mercaptopyruvate su 60.5 22 0.00048 39.8 7.0 43 330-374 252-294 (320)
153 PF04343 DUF488: Protein of un 60.4 13 0.00029 35.7 4.5 47 280-326 6-54 (122)
154 cd08193 HVD 5-hydroxyvalerate 60.3 14 0.0003 42.1 5.5 76 690-775 26-102 (376)
155 TIGR02477 PFKA_PPi diphosphate 60.2 8.2 0.00018 46.6 3.7 53 754-808 160-229 (539)
156 PLN02251 pyrophosphate-depende 60.0 8 0.00017 46.9 3.6 53 755-809 190-259 (568)
157 TIGR01815 TrpE-clade3 anthrani 59.8 18 0.00039 45.2 6.6 79 689-789 515-598 (717)
158 PRK07411 hypothetical protein; 59.1 18 0.00039 41.8 6.2 83 274-374 283-367 (390)
159 KOG1089 Myotubularin-related p 59.0 15 0.00033 44.4 5.6 28 345-372 342-369 (573)
160 KOG4228 Protein tyrosine phosp 58.6 11 0.00023 48.5 4.5 46 112-157 679-733 (1087)
161 PRK13566 anthranilate synthase 58.5 22 0.00048 44.5 7.1 79 689-789 525-608 (720)
162 PRK07085 diphosphate--fructose 58.5 9.2 0.0002 46.3 3.7 52 755-808 164-232 (555)
163 PRK11574 oxidative-stress-resi 58.1 36 0.00078 34.9 7.5 99 690-793 2-113 (196)
164 cd01521 RHOD_PspE2 Member of t 58.0 24 0.00052 32.8 5.7 81 272-374 7-91 (110)
165 KOG1115 Ceramide kinase [Lipid 58.0 9.5 0.00021 44.4 3.5 93 671-773 129-235 (516)
166 PRK11493 sseA 3-mercaptopyruva 57.9 19 0.00041 39.4 5.8 43 331-375 215-257 (281)
167 PRK09860 putative alcohol dehy 57.9 22 0.00047 40.9 6.5 76 690-775 31-107 (383)
168 PRK08762 molybdopterin biosynt 57.7 32 0.0007 39.4 7.8 78 275-374 5-82 (376)
169 cd01743 GATase1_Anthranilate_S 57.5 7.4 0.00016 39.7 2.4 35 754-788 41-80 (184)
170 PLN03028 pyrophosphate--fructo 57.5 9.6 0.00021 46.6 3.7 31 755-785 173-208 (610)
171 PRK08250 glutamine amidotransf 57.1 20 0.00044 38.5 5.7 77 692-788 2-93 (235)
172 PRK07649 para-aminobenzoate/an 57.1 15 0.00032 38.4 4.6 73 693-788 2-81 (195)
173 cd00765 Pyrophosphate_PFK Phos 56.8 9.9 0.00021 46.0 3.6 53 755-809 166-235 (550)
174 PF05925 IpgD: Enterobacterial 56.3 3.7 8E-05 48.9 0.0 24 345-368 451-474 (559)
175 PRK07878 molybdopterin biosynt 55.6 28 0.00062 40.2 7.0 80 274-374 288-368 (392)
176 TIGR02478 6PF1K_euk 6-phosphof 55.5 10 0.00022 47.5 3.6 118 688-809 387-546 (745)
177 cd00764 Eukaryotic_PFK Phospho 54.5 11 0.00024 47.3 3.6 118 688-809 387-546 (762)
178 PLN02335 anthranilate synthase 54.5 27 0.00059 37.3 6.1 76 690-788 18-100 (222)
179 PRK11493 sseA 3-mercaptopyruva 54.4 50 0.0011 36.1 8.3 97 275-374 7-113 (281)
180 cd01531 Acr2p Eukaryotic arsen 53.3 47 0.001 31.0 6.9 78 275-368 4-83 (113)
181 cd08181 PPD-like 1,3-propanedi 53.1 32 0.00069 39.1 6.8 74 691-774 26-101 (357)
182 PRK15378 inositol phosphate ph 53.1 8.5 0.00019 45.6 2.2 19 351-369 460-478 (564)
183 PRK09629 bifunctional thiosulf 52.7 49 0.0011 40.7 8.6 96 275-375 149-249 (610)
184 PTZ00468 phosphofructokinase f 52.5 12 0.00025 49.3 3.4 44 754-797 799-864 (1328)
185 cd08179 NADPH_BDH NADPH-depend 52.4 30 0.00065 39.5 6.5 76 690-775 23-100 (375)
186 cd03132 GATase1_catalase Type 52.3 56 0.0012 31.6 7.5 94 691-789 2-105 (142)
187 cd08186 Fe-ADH8 Iron-containin 52.3 37 0.0008 38.9 7.2 76 690-775 26-103 (383)
188 cd08187 BDH Butanol dehydrogen 52.0 33 0.00072 39.2 6.7 88 690-787 28-136 (382)
189 TIGR03167 tRNA_sel_U_synt tRNA 51.5 33 0.00071 38.7 6.4 24 349-374 76-100 (311)
190 PRK10624 L-1,2-propanediol oxi 51.0 34 0.00074 39.2 6.6 74 691-774 31-105 (382)
191 cd08170 GlyDH Glycerol dehydro 50.7 33 0.00072 38.7 6.4 86 690-787 22-109 (351)
192 TIGR01357 aroB 3-dehydroquinat 50.2 27 0.00058 39.3 5.5 90 690-787 20-115 (344)
193 cd08171 GlyDH-like2 Glycerol d 49.9 32 0.0007 38.8 6.1 96 691-796 23-121 (345)
194 COG2897 SseA Rhodanese-related 49.7 57 0.0012 36.6 7.8 88 276-371 159-257 (285)
195 cd08185 Fe-ADH1 Iron-containin 49.6 34 0.00074 39.1 6.3 75 691-775 26-102 (380)
196 PF02126 PTE: Phosphotriestera 49.5 25 0.00055 39.6 5.1 42 278-321 42-83 (308)
197 TIGR03800 PLP_synth_Pdx2 pyrid 49.4 41 0.0009 34.8 6.4 36 754-789 35-80 (184)
198 PRK05380 pyrG CTP synthetase; 49.4 35 0.00076 41.3 6.6 36 753-788 341-381 (533)
199 PF13685 Fe-ADH_2: Iron-contai 49.3 53 0.0011 36.1 7.4 88 689-794 18-116 (250)
200 cd08169 DHQ-like Dehydroquinat 48.5 37 0.00079 38.6 6.3 92 690-787 23-117 (344)
201 cd08175 G1PDH Glycerol-1-phosp 47.8 37 0.00079 38.3 6.2 89 690-787 23-112 (348)
202 PTZ00287 6-phosphofructokinase 47.8 15 0.00034 48.5 3.5 53 755-809 928-997 (1419)
203 cd08178 AAD_C C-terminal alcoh 47.7 29 0.00062 40.0 5.4 76 690-775 21-97 (398)
204 COG1819 Glycosyl transferases, 47.7 1.3E+02 0.0028 35.1 10.7 121 685-812 231-369 (406)
205 cd08192 Fe-ADH7 Iron-containin 47.6 30 0.00064 39.4 5.4 76 690-775 24-100 (370)
206 PF08357 SEFIR: SEFIR domain; 47.6 22 0.00047 34.9 3.8 78 691-776 1-79 (150)
207 cd08551 Fe-ADH iron-containing 47.5 33 0.00071 38.9 5.8 88 691-787 24-130 (370)
208 TIGR02638 lactal_redase lactal 47.5 40 0.00087 38.6 6.5 80 691-787 30-138 (379)
209 TIGR00337 PyrG CTP synthase. C 47.4 39 0.00084 40.9 6.5 83 691-788 290-381 (525)
210 KOG1116 Sphingosine kinase, in 47.3 27 0.00058 42.4 5.1 86 688-788 177-276 (579)
211 PRK13527 glutamine amidotransf 47.2 46 0.00099 34.6 6.3 36 754-789 42-87 (200)
212 PRK01269 tRNA s(4)U8 sulfurtra 46.3 38 0.00083 40.3 6.2 67 289-374 408-474 (482)
213 cd03174 DRE_TIM_metallolyase D 46.0 1.2E+02 0.0026 32.3 9.4 80 278-358 119-201 (265)
214 PRK15454 ethanol dehydrogenase 46.0 31 0.00068 39.9 5.3 77 690-775 49-125 (395)
215 PLN02834 3-dehydroquinate synt 44.9 36 0.00078 40.1 5.7 96 690-788 100-198 (433)
216 PRK05637 anthranilate synthase 44.8 35 0.00076 36.1 5.1 75 691-788 2-82 (208)
217 PRK13525 glutamine amidotransf 44.5 56 0.0012 33.9 6.5 36 754-789 37-82 (189)
218 PRK00002 aroB 3-dehydroquinate 44.1 37 0.0008 38.6 5.5 91 690-787 31-126 (358)
219 TIGR02478 6PF1K_euk 6-phosphof 44.1 19 0.0004 45.3 3.3 55 754-810 93-179 (745)
220 PRK09875 putative hydrolase; P 44.0 1E+02 0.0022 34.5 8.8 43 276-320 36-78 (292)
221 COG0504 PyrG CTP synthase (UTP 43.6 45 0.00097 40.0 6.1 33 756-788 344-381 (533)
222 cd01746 GATase1_CTP_Synthase T 43.3 48 0.001 35.8 5.9 36 753-788 53-93 (235)
223 PRK09423 gldA glycerol dehydro 43.2 43 0.00093 38.2 5.8 85 691-787 30-116 (366)
224 COG1454 EutG Alcohol dehydroge 42.7 26 0.00057 40.6 4.0 76 690-775 29-105 (377)
225 TIGR01426 MGT glycosyltransfer 42.4 75 0.0016 35.8 7.6 33 751-787 287-319 (392)
226 PF00465 Fe-ADH: Iron-containi 42.3 34 0.00073 38.8 4.8 76 691-775 22-97 (366)
227 PTZ00468 phosphofructokinase f 42.0 22 0.00048 46.9 3.6 43 755-797 196-255 (1328)
228 cd08183 Fe-ADH2 Iron-containin 40.8 77 0.0017 36.2 7.4 72 690-775 22-94 (374)
229 cd08173 Gro1PDH Sn-glycerol-1- 40.4 80 0.0017 35.5 7.4 81 691-787 26-110 (339)
230 cd00158 RHOD Rhodanese Homolog 40.3 56 0.0012 28.0 4.9 27 345-373 48-74 (89)
231 PRK13181 hisH imidazole glycer 40.2 46 0.00099 34.5 5.1 34 754-788 36-81 (199)
232 cd08549 G1PDH_related Glycerol 40.1 54 0.0012 37.0 5.9 86 691-787 25-112 (332)
233 cd08195 DHQS Dehydroquinate sy 39.5 62 0.0013 36.6 6.3 91 690-787 24-119 (345)
234 PRK06203 aroB 3-dehydroquinate 39.2 66 0.0014 37.4 6.6 96 690-787 42-145 (389)
235 cd08182 HEPD Hydroxyethylphosp 38.5 56 0.0012 37.2 5.8 73 690-775 23-96 (367)
236 cd08177 MAR Maleylacetate redu 38.5 37 0.00081 38.2 4.4 85 690-787 23-109 (337)
237 cd03785 GT1_MurG MurG is an N- 38.5 1.5E+02 0.0032 32.4 8.9 58 750-811 247-324 (350)
238 cd01532 4RHOD_Repeat_1 Member 38.5 56 0.0012 29.4 4.7 15 346-361 49-63 (92)
239 PRK13143 hisH imidazole glycer 38.4 98 0.0021 32.3 7.2 70 692-788 2-80 (200)
240 cd08191 HHD 6-hydroxyhexanoate 38.4 84 0.0018 36.2 7.2 76 691-775 23-98 (386)
241 cd07943 DRE_TIM_HOA 4-hydroxy- 38.3 2E+02 0.0043 31.3 9.7 81 277-358 115-196 (263)
242 cd07766 DHQ_Fe-ADH Dehydroquin 38.3 45 0.00097 37.1 4.9 86 690-787 23-112 (332)
243 cd00764 Eukaryotic_PFK Phospho 38.1 28 0.0006 43.9 3.5 118 689-809 2-181 (762)
244 PF06283 ThuA: Trehalose utili 37.2 92 0.002 32.6 6.8 99 692-814 1-110 (217)
245 PRK09393 ftrA transcriptional 37.0 1.2E+02 0.0027 33.5 8.1 46 753-798 73-130 (322)
246 PF00117 GATase: Glutamine ami 36.9 14 0.00031 37.4 0.7 36 753-788 40-81 (192)
247 TIGR01382 PfpI intracellular p 36.7 93 0.002 30.7 6.4 35 755-789 60-102 (166)
248 PRK12564 carbamoyl phosphate s 35.8 32 0.00069 39.6 3.3 74 690-788 177-257 (360)
249 PRK01175 phosphoribosylformylg 35.3 95 0.0021 34.3 6.7 84 691-794 4-109 (261)
250 cd07939 DRE_TIM_NifV Streptomy 33.9 2.9E+02 0.0063 30.0 10.1 78 280-358 116-193 (259)
251 cd08180 PDD 1,3-propanediol de 33.5 98 0.0021 34.8 6.6 87 690-787 22-117 (332)
252 cd07944 DRE_TIM_HOA_like 4-hyd 33.2 2.5E+02 0.0055 30.8 9.6 80 278-358 113-194 (266)
253 cd01744 GATase1_CPSase Small c 33.0 34 0.00073 34.9 2.7 34 755-788 39-78 (178)
254 cd05566 PTS_IIB_galactitol PTS 32.9 2.5E+02 0.0054 25.1 8.0 87 691-808 1-88 (89)
255 PF07899 Frigida: Frigida-like 32.6 47 0.001 37.2 3.9 103 94-227 148-250 (290)
256 COG4069 Uncharacterized protei 32.6 39 0.00084 38.1 3.2 37 751-788 262-298 (367)
257 TIGR03217 4OH_2_O_val_ald 4-hy 32.6 2.8E+02 0.006 31.7 10.0 82 276-358 116-199 (333)
258 KOG2387 CTP synthase (UTP-ammo 32.5 66 0.0014 38.2 5.1 36 753-788 361-401 (585)
259 PRK11366 puuD gamma-glutamyl-g 32.2 75 0.0016 34.6 5.3 36 753-788 59-116 (254)
260 cd01745 GATase1_2 Subgroup of 31.9 59 0.0013 33.6 4.3 66 707-788 21-109 (189)
261 cd08172 GlyDH-like1 Glycerol d 31.6 76 0.0017 35.8 5.4 84 690-787 23-108 (347)
262 PLN02327 CTP synthase 31.0 1E+02 0.0023 37.6 6.6 35 753-788 360-400 (557)
263 PRK07567 glutamine amidotransf 31.0 34 0.00075 37.0 2.5 36 754-789 50-103 (242)
264 cd01537 PBP1_Repressors_Sugar_ 30.6 1.4E+02 0.003 30.2 6.7 87 693-790 2-90 (264)
265 TIGR01823 PabB-fungal aminodeo 30.5 1.1E+02 0.0023 38.8 6.8 36 754-789 52-96 (742)
266 TIGR01368 CPSaseIIsmall carbam 30.4 47 0.001 38.3 3.5 73 691-789 174-253 (358)
267 PRK00843 egsA NAD(P)-dependent 30.4 1.5E+02 0.0033 33.6 7.6 82 691-787 35-119 (350)
268 TIGR03405 Phn_Fe-ADH phosphona 30.3 73 0.0016 36.2 5.0 75 691-774 24-98 (355)
269 cd08550 GlyDH-like Glycerol_de 30.2 1.1E+02 0.0023 34.8 6.3 81 691-787 23-109 (349)
270 CHL00188 hisH imidazole glycer 29.9 77 0.0017 33.7 4.8 37 755-792 39-87 (210)
271 PF13380 CoA_binding_2: CoA bi 29.8 1.2E+02 0.0026 29.1 5.7 87 691-788 1-88 (116)
272 PRK08007 para-aminobenzoate sy 29.7 76 0.0016 32.8 4.6 73 693-788 2-81 (187)
273 PF13528 Glyco_trans_1_3: Glyc 28.9 1.3E+02 0.0029 32.5 6.5 35 749-787 244-278 (318)
274 cd08199 EEVS 2-epi-5-epi-valio 28.8 1.3E+02 0.0028 34.5 6.6 92 689-787 25-122 (354)
275 COG0693 ThiJ Putative intracel 28.3 1.9E+02 0.0042 29.2 7.2 101 690-794 2-114 (188)
276 PRK13805 bifunctional acetalde 28.0 1.2E+02 0.0027 38.6 7.0 78 689-775 479-558 (862)
277 PRK12838 carbamoyl phosphate s 27.8 60 0.0013 37.4 3.8 73 690-788 167-246 (354)
278 cd01741 GATase1_1 Subgroup of 27.7 1.3E+02 0.0027 30.7 5.8 37 753-789 44-91 (188)
279 COG0745 OmpR Response regulato 27.2 5.8E+02 0.013 27.5 10.9 99 692-812 2-119 (229)
280 PRK08195 4-hyroxy-2-oxovalerat 27.2 3.7E+02 0.008 30.7 9.9 82 276-358 117-200 (337)
281 TIGR01737 FGAM_synth_I phospho 26.9 1.6E+02 0.0034 31.5 6.6 36 754-789 39-88 (227)
282 PRK09065 glutamine amidotransf 26.3 48 0.001 35.6 2.6 35 754-788 53-97 (237)
283 PRK11858 aksA trans-homoaconit 26.2 4.2E+02 0.0091 30.7 10.2 79 279-358 121-199 (378)
284 cd01535 4RHOD_Repeat_4 Member 26.1 2.7E+02 0.0059 27.7 7.6 22 346-368 48-69 (145)
285 CHL00197 carA carbamoyl-phosph 26.1 1.4E+02 0.003 34.9 6.3 75 690-789 192-273 (382)
286 TIGR00315 cdhB CO dehydrogenas 26.0 4.3E+02 0.0094 27.4 9.2 54 754-810 99-161 (162)
287 PRK14042 pyruvate carboxylase 25.8 5.3E+02 0.012 32.0 11.4 91 267-358 110-208 (596)
288 PF04101 Glyco_tran_28_C: Glyc 25.6 33 0.00071 33.9 1.1 33 749-785 66-98 (167)
289 PRK11249 katE hydroperoxidase 25.6 2.3E+02 0.005 36.0 8.4 99 685-788 592-700 (752)
290 TIGR03566 FMN_reduc_MsuE FMN r 25.1 38 0.00083 34.3 1.5 16 874-889 68-83 (174)
291 cd08197 DOIS 2-deoxy-scyllo-in 24.3 1.4E+02 0.0029 34.4 5.8 88 690-788 23-119 (355)
292 cd03128 GAT_1 Type 1 glutamine 24.2 75 0.0016 25.7 2.8 38 753-790 44-90 (92)
293 cd01742 GATase1_GMP_Synthase T 24.0 35 0.00076 34.4 1.0 36 753-788 39-79 (181)
294 cd03134 GATase1_PfpI_like A ty 23.9 2.4E+02 0.0051 27.8 6.8 36 755-790 62-105 (165)
295 COG2012 RPB5 DNA-directed RNA 23.8 18 0.00039 33.2 -1.0 18 77-94 36-63 (80)
296 cd07940 DRE_TIM_IPMS 2-isoprop 23.4 5.1E+02 0.011 28.3 9.8 78 280-358 120-200 (268)
297 PRK09389 (R)-citramalate synth 23.2 4.8E+02 0.01 31.5 10.2 79 279-358 119-197 (488)
298 TIGR00888 guaA_Nterm GMP synth 23.1 42 0.00092 34.3 1.4 33 756-788 42-79 (188)
299 PRK10569 NAD(P)H-dependent FMN 22.8 44 0.00096 34.9 1.5 16 874-889 66-81 (191)
300 TIGR02660 nifV_homocitr homoci 22.8 5.4E+02 0.012 29.6 10.2 79 279-358 118-196 (365)
301 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.8 2.9E+02 0.0062 30.5 7.8 80 278-358 122-203 (275)
302 PRK09629 bifunctional thiosulf 22.7 3.3E+02 0.0072 33.7 9.0 88 275-374 11-107 (610)
303 PRK13146 hisH imidazole glycer 22.5 2.4E+02 0.0051 29.8 6.8 35 754-788 40-86 (209)
304 cd03129 GAT1_Peptidase_E_like 22.5 1.8E+02 0.0039 30.4 5.9 88 689-790 28-125 (210)
305 COG0655 WrbA Multimeric flavod 22.2 42 0.00091 35.1 1.1 17 873-889 74-90 (207)
306 TIGR02090 LEU1_arch isopropylm 22.0 6.3E+02 0.014 29.1 10.6 80 278-358 116-195 (363)
307 cd06267 PBP1_LacI_sugar_bindin 21.7 2.4E+02 0.0052 28.6 6.5 84 693-788 2-87 (264)
308 PF00682 HMGL-like: HMGL-like 21.6 3.8E+02 0.0083 28.2 8.2 79 279-358 113-192 (237)
309 cd01748 GATase1_IGP_Synthase T 21.6 1.4E+02 0.0031 30.8 4.9 34 755-788 36-80 (198)
310 cd03784 GT1_Gtf_like This fami 20.6 1.3E+02 0.0028 33.8 4.7 59 749-811 298-372 (401)
311 PRK00945 acetyl-CoA decarbonyl 20.3 4.2E+02 0.009 27.8 7.9 52 754-810 107-169 (171)
312 cd07948 DRE_TIM_HCS Saccharomy 20.2 6E+02 0.013 28.0 9.5 77 280-358 118-195 (262)
No 1
>PLN02727 NAD kinase
Probab=100.00 E-value=3.9e-220 Score=1901.79 Aligned_cols=862 Identities=69% Similarity=1.045 Sum_probs=806.1
Q ss_pred cccCCCCccccccc---cccccCCceeEeeeeeEeeccchhhhhccceEEEEeeeccccccccCcccccccCCCCCCCCc
Q 002705 7 MQRLSSPATGILCS---SKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSFSLNLGLDSQVIQSNDPSQLPW 83 (890)
Q Consensus 7 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (890)
|.|+ +|+|||++. ++++++++||++|||||. +|+...||++||||+|+||++||++||||||+||+||+|||||
T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (986)
T PLN02727 1 MARL-SPVTGILSSCLCSVKLNSDGKLLGFGFGFW--QRKEPLKRRLKFVVSAELSKSFSSNLGLDSQNFQSRDLSQLPW 77 (986)
T ss_pred CCCC-CCccccccccccceeeccccceeccchhhh--hccHHHHhhhhheehhhhhhccccccCcccccccccchhcCcc
Confidence 5788 999999744 999999999999999984 3444459999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHhhhhhHHHHHHHHHHHHHhhcCCCccceeeeeccCCCCCCCcccceeehhhhHHHhhhcCCccccccc
Q 002705 84 IGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGR 163 (890)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~a~~l~~a~~~~~~~~~~~ec~v~~~~~~~~~~~led~ii~~~~~~~~~ln~g~~~v~s~~ 163 (890)
|||||||||||||||||||+|||||+|||++||||+||||+|+|||++||||.|||||+++||||+++||+||.||+|||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r 157 (986)
T PLN02727 78 IGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECPVSYDFTSEEKPLLEDKIVSVLGCMLSLLNKGREEVLSGR 157 (986)
T ss_pred ccCCCccHHHHhhhhhHHHHHHHHHHHHHHHhcCcccccccccccCCccccchhhhhHHHHHHHHHHHHhcchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCcccchhhhhhhhhHHHHHHHhccCCCCcchhhHHHHHHHHHhhhccCCCCCCCCCCCCc
Q 002705 164 SSIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHT 243 (890)
Q Consensus 164 ~~~~~~f~~~~~~~~~~~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~~~~l~v~~kLqr~~~~~~d~g~pr~~g~p~~~ 243 (890)
+++|++|+++|++.||+++||||+||.+||+|||+||++|++||+|+++||++||||||||+|+|||.||||.+||||++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~pr~~~~p~~~ 237 (986)
T PLN02727 158 SSIMSSFRGSEVSAMEDKLPPLAIFRGEMKRCCESLHVALENYLTPDDDRSLDVWRKLQRLKNVCYDAGFPRSDDYPCHT 237 (986)
T ss_pred hhhhhhcccchhhhhhccCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHhhhhhcCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEecCCCcccccCCCcccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEe
Q 002705 244 LFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (890)
Q Consensus 244 ~i~Nw~~V~ls~~~~~~~~~~~e~~LYRSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIP 323 (890)
.|+||.+||++++++|+.+.++|..+|||+||+++++++|+++|||||||||++.++...+.++++++++..|++|+|+|
T Consensus 238 ~~~n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIP 317 (986)
T PLN02727 238 LFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIP 317 (986)
T ss_pred cccccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEee
Confidence 99999999999999999999999999999999999999999999999999999973345555567888999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhCC-CCHHHHHHHhhhcccccccchHHHHHHHh
Q 002705 324 VEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMA-RCASQISGQTITSNDVLLKDSTRTRKLKA 402 (890)
Q Consensus 324 V~d~~~ps~E~v~af~~iL~d~~~~PVLVHCtAGKDRTGalvaLlr~~lG-vs~ddIiaDYL~sn~~~~~~~~~~~k~~~ 402 (890)
|.+...|+++++++|++++++..++|||+||++|.||||+|++||+.++- ....++. +...
T Consensus 318 Vs~~~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~~~~~------------------~~~~ 379 (986)
T PLN02727 318 VEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAERLLG------------------QNSV 379 (986)
T ss_pred cCCCCCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHHHHHHHcccchhhhc------------------cccc
Confidence 98889999999999999996677999999999999999999999998743 3222221 1122
Q ss_pred hhhhhhhhhccchHHHhHHhhhccccccccccccchhccccCCCcccc-cccccccccchhhccccCccccccccccCCc
Q 002705 403 SAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMDKRNQSNGAYKG-LSSVEGVESAKEVDTAVGSLGTTFSKETDPF 481 (890)
Q Consensus 403 ~~~~~~l~s~~g~~e~~l~~~~~~~~~~~~~~r~nl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (890)
+.....+.+++|++++.+++.++.++.+.....+-.+++.+++++++| +.++|++...+++. +++++++||++|+|||
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 458 (986)
T PLN02727 380 VNGNGKLDQETGSLQETNDKDSSSNGSESGESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVG-TGVESQSNFNMESDPL 458 (986)
T ss_pred cccCcccccccCccccccccccccCcccccccccccccccccccccccccccccccccccccc-ccccccceeeeecCcc
Confidence 233446679999999999999999999999999999999999999999 99999999999998 8899999999999999
Q ss_pred cccCCCCcccchHHHhhhhhccccCCCccccccccccccCC----------ccccCCCCCcccccccccccccCCCCCCC
Q 002705 482 KAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLP----------SEIVSSGPVSGVAETRYSQWSLSGNNLSP 551 (890)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (890)
|||+|||||||||||++|||+||++|++|+|||+|+|++|| ++|++.+++++++|+++||++++++++++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~sng~~s~kn~s~ 538 (986)
T PLN02727 459 KAQVPPCDVFSKKEMSKFFRSKKIYPPTYLNYRRKGFEKLPVPQFTGVTQGSKIDDTDSISRLVETGRSNGLVSEKNSSP 538 (986)
T ss_pred cccCCCcccccHHHHHHHHhhcccCCcccccchhcccccCCccccccccchhhccCccchhhhhhccCCCccccccccCc
Confidence 99999999999999999999999999999999999999998 77999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccccCCccCccccCCCcccccccccccccccccccccccccccccccCCCCCCCCCCCCC-Cc
Q 002705 552 NHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVISSSVRDVQRSNGKPSNSGDDDLG-PI 630 (890)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 630 (890)
+.|++.+.+.|.+||++++|+|++++.++..++.++++.+.+++|+++++.++++++.++++.+||++++..+||++ .|
T Consensus 539 d~qss~~~~~k~sNGss~~s~~s~s~~Ss~~~~~~~~ng~~stsv~~nl~~~v~s~s~res~s~Ng~a~vgssd~~~~~~ 618 (986)
T PLN02727 539 KYQSSEFDNGKSSNGSSFASDGSLSVASSITNGNPSNNGASSSTVSDNLERSVASVSVRESQRSNGKASLGSSDDELGAI 618 (986)
T ss_pred cccchhhccccCCCCccccccCcccccccccCCccccCCCccccccCCCcccccccccccccccCCccccccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cCccccccCcceeeecccccceeeeeecCcceeeeeecCCcccccCCchhhhhhcccCCCcEEEEEecCChhHHHHHHHH
Q 002705 631 VGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEV 710 (890)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~sc~r~~~~~s~~~~~~ps~~~~~L~W~~~pkkVlIV~K~~~ea~e~a~eL 710 (890)
|||||||+||+||||+|||++||++||||||||||.|++|+++|+|||+||++|+|++++++|+||+|+++++.+.+.+|
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~c~~~~~~~~~~~~~~~s~~~~~l~W~~p~rtVgIV~K~~~ea~~~~~eL 698 (986)
T PLN02727 619 EGNMCASATGVVRVQSRRKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQELMEEAKEV 698 (986)
T ss_pred cccccccccccEEeeccCCcceEEEEecCcceeehhhccccccccCcchhceeeecCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCCCc
Q 002705 711 ASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSL 790 (890)
Q Consensus 711 ~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~G~L 790 (890)
++||.+++|++|+++++.++.+...++++...+++..+..++.+++|+||+||||||||+|+|++....+||||||+|+|
T Consensus 699 ~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlGrL 778 (986)
T PLN02727 699 ASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSL 778 (986)
T ss_pred HHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 99999856999999999887664445543334444445556677899999999999999999999999999999999999
Q ss_pred ccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEeEEEeccCCCCccEEEEEEECCeEe
Q 002705 791 GFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLI 870 (890)
Q Consensus 791 GFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALNEVVI~Rg~~~~li~ieVyIDg~~l 870 (890)
||||+++++++++.|+++++|+|.++|+++++||+|+|++.++|+.+....++|||||||.|+..++|+.|+|||||+++
T Consensus 779 GFLTdi~~ee~~~~L~~Il~G~y~i~~~~ie~R~~L~~~V~r~g~~i~~~~~~ALNEVVI~Rg~~~~mi~ieVyIDg~~l 858 (986)
T PLN02727 779 GFLTSHYFEDFRQDLRQVIHGNNTLDGVYITLRMRLRCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLI 858 (986)
T ss_pred cccccCCHHHHHHHHHHHHcCCccccccccceeeEEEEEEecCCcccccccceEEEEEEEecCCCccEEEEEEEECCEEe
Confidence 99999999999999999999999766678899999999999888765322468999999999999999999999999999
Q ss_pred EEEecCeEEEcCCCCCcCCC
Q 002705 871 TKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 871 t~~rgDGVIVSTPtg~~~~~ 890 (890)
++|+||||||||||||++|+
T Consensus 859 ~tyrgDGLIVSTPTGSTAYS 878 (986)
T PLN02727 859 TKVQGDGVIVATPTGSTAYS 878 (986)
T ss_pred EEeecceEEEECCCchHHhH
Confidence 99999999999999999995
No 2
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-40 Score=361.29 Aligned_cols=225 Identities=35% Similarity=0.556 Sum_probs=183.1
Q ss_pred ceeeeeecCCcccccCCchhhhhhcccCCCcEEEEEecCChhHHHHHHHHHHHHhcCC-CeEEEEcCchhhhh--hcC--
Q 002705 661 SCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQE-KMNILVEPDVHDIF--ARI-- 735 (890)
Q Consensus 661 sc~r~~~~~s~~~~~~ps~~~~~L~W~~~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~-gieV~vE~~va~~l--~~~-- 735 (890)
||+++....+...-.-+...+|.|.|.++++.|+|.+|.+.+..+...|+++||.+.. .+.|+++.++++.. ...
T Consensus 65 sn~~~~~~~~~~~~~~~~~~s~~l~~~~p~~~~lv~K~~d~s~~~~~~Elv~~ll~~~~~i~V~v~~~~~~~~~f~~~~~ 144 (409)
T KOG2178|consen 65 SNSRELMSNVAAVRSIQKSLSQRLIWLKPPKNLLVTKKNDESVLEKFVELVEWLLQTFPNITVYVEDKVAKDKQFSAGNL 144 (409)
T ss_pred ccchhhhhhhhhhhhccchhhhchhccCCCceEEEEcCCcHHHHHHHHHHHHHHHhhCCCeEEEechhhhhhhhhcccch
Confidence 5556533333333344456779999999998888888887788999999999998764 59999999887643 110
Q ss_pred ----CCCccceeeeccCccccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcC
Q 002705 736 ----PGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYG 811 (890)
Q Consensus 736 ----p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G 811 (890)
.....+..+......++.+.+|+|||||||||+|+|+++|++..|||+.|++|+|||||+|+++++++.|.++++|
T Consensus 145 ~e~~~~~~~i~y~~~e~~~d~~~~~D~iItLGGDGTvL~aS~LFq~~VPPV~sFslGslGFLtpf~f~~f~~~l~~v~~~ 224 (409)
T KOG2178|consen 145 DESFGVKERILYWTTEGCDDLPNRFDLIITLGGDGTVLYASSLFQRSVPPVLSFSLGSLGFLTPFPFANFQEQLARVLNG 224 (409)
T ss_pred hhcccchhceEeeccccccccccceeEEEEecCCccEEEehhhhcCCCCCeEEeecCCccccccccHHHHHHHHHHHhcC
Confidence 0111111111122367788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeeeeEEEEEEEeCCeecC---CCccceEeEEEeccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcC
Q 002705 812 NNTLDGVYITLRMRLCCEIFRNGKAMP---GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFN 888 (890)
Q Consensus 812 ~y~~~g~~Ie~R~rLe~~v~r~G~~v~---~~~~~ALNEVVI~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~ 888 (890)
+ ..+..||||+|.+.|.++... ...+++||||+|+||+++.|+.+++|+||+++|++|||||||||||||+|
T Consensus 225 ~-----~~v~lR~RL~C~i~rk~~~~~~~~~~~~~vLNEvvIdRGpsP~ls~l~ly~d~~~iT~vq~DGliVaTPTGSTA 299 (409)
T KOG2178|consen 225 R-----AAVNLRMRLRCSLKRKDLAEKTHAASSHYVLNEVVIDRGPSPFLSNLDLYVDDKLITKVQGDGLIVATPTGSTA 299 (409)
T ss_pred c-----ceEeeeeeEEEEEEEecccccccccceEEEeeeEEEccCCCchhcceeEEecCcEEEEEecceEEEecCCchhh
Confidence 8 468999999999998655431 12579999999999999999999999999999999999999999999999
Q ss_pred CC
Q 002705 889 YA 890 (890)
Q Consensus 889 ~~ 890 (890)
|+
T Consensus 300 YS 301 (409)
T KOG2178|consen 300 YS 301 (409)
T ss_pred hH
Confidence 95
No 3
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=100.00 E-value=4.7e-40 Score=371.69 Aligned_cols=214 Identities=37% Similarity=0.621 Sum_probs=175.5
Q ss_pred ccccCCchhhhhhcccCCCcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcC-CCCccceeeec-cC
Q 002705 672 LAFTHPSTQQQMLMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARI-PGFGFVQTFYL-QD 748 (890)
Q Consensus 672 ~~~~~ps~~~~~L~W~~~pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~-p~~~~v~~f~~-~~ 748 (890)
+.-+.+|++|..|.|.++|++|+||.|+++ ++.+.+.++.+||.+++|++|++++..+..+... ...+....+.. ..
T Consensus 176 ~~~~~~~~~~~~l~w~~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~ 255 (508)
T PLN02935 176 ITTAERSSKQISLKWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKE 255 (508)
T ss_pred eeeccCCCceEEeeecCCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccch
Confidence 334567899999999999999999999987 6888999999999844699999988765433110 00000100000 01
Q ss_pred ccccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEE
Q 002705 749 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCC 828 (890)
Q Consensus 749 ~~el~e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~ 828 (890)
..++..++|+||+||||||||+|+|.+....+||||||+|+|||||+++++++++.|+++++|+| .|++||||+|
T Consensus 256 ~~~l~~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G~LGFLt~i~~~e~~~~Le~il~G~y-----~Ie~R~~L~~ 330 (508)
T PLN02935 256 ILLLHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYRDCLDAILKGPI-----SITLRHRLQC 330 (508)
T ss_pred hhhcccCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCCCcceecccCHHHHHHHHHHHHcCCc-----eEEEEeEEEE
Confidence 12244579999999999999999999999999999999999999999999999999999999995 5899999999
Q ss_pred EEEeCCeecC---CCccceEeEEEeccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 829 EIFRNGKAMP---GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 829 ~v~r~G~~v~---~~~~~ALNEVVI~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
.+.++++... ...++||||+||.|+..++|+.++|||||+++++|+||||||||||||++|+
T Consensus 331 ~v~~~~~~~~~~~~~~~~ALNEvvI~rg~~~~~i~l~V~Idg~~v~~~rgDGLIVSTPTGSTAYs 395 (508)
T PLN02935 331 HIIRDAAKNEYETEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYS 395 (508)
T ss_pred EEEcCCceecccccccceeccceEEecCCCceEEEEEEEECCEeEEEEECCcEEEecCccHHHHH
Confidence 9987664321 0135799999999999999999999999999999999999999999999995
No 4
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.1e-38 Score=343.49 Aligned_cols=184 Identities=19% Similarity=0.308 Sum_probs=160.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHH
Q 002705 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (890)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTl 768 (890)
++++|+|+.|+.+++.+.++++.+||.+ +|+++++++..+..+. .+++ ...++.+++|+||+|||||||
T Consensus 9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~Dlvi~iGGDGT~ 77 (287)
T PRK14077 9 NIKKIGLVTRPNVSLDKEILKLQKILSI-YKVEILLEKESAEILD-LPGY---------GLDELFKISDFLISLGGDGTL 77 (287)
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhc-cccc---------chhhcccCCCEEEEECCCHHH
Confidence 4778999999988888999999999987 5999999887655432 1111 113444579999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEeEE
Q 002705 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (890)
Q Consensus 769 L~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALNEV 848 (890)
|+|+|.+...++||+|||+|+||||++++++++++.|+++++|+| .+++|++|+|.+.++++.. ...+||||+
T Consensus 78 L~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y-----~ie~r~~L~~~v~~~~~~~--~~~~AlNev 150 (287)
T PRK14077 78 ISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEF-----EIEKPYMLSVFLEKKQGKI--LEKLAFNDV 150 (287)
T ss_pred HHHHHHhcCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCC-----eEEEEEEEEEEEEeCCceE--EEEEEeeee
Confidence 999999999999999999999999999999999999999999995 5899999999998766443 135799999
Q ss_pred EeccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 849 VVDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 849 VI~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
+|.|+..++|+.+++||||+++++|+||||||||||||++|+
T Consensus 151 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVSTPTGSTAYs 192 (287)
T PRK14077 151 VISKNNQASMAHIEAFLNEKYFNEYFGDGVIVATPAGSTAYN 192 (287)
T ss_pred eeccCCCccEEEEEEEECCEEEEEEEcCEEEEeCCCchhHhH
Confidence 999999999999999999999999999999999999999995
No 5
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=4.3e-38 Score=341.41 Aligned_cols=194 Identities=24% Similarity=0.270 Sum_probs=161.6
Q ss_pred CCCcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhc-CCCCc--cceeeeccCccccCCCccEEEEEc
Q 002705 688 TTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFAR-IPGFG--FVQTFYLQDTSDLHERVDFVACLG 763 (890)
Q Consensus 688 ~~pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~-~p~~~--~v~~f~~~~~~el~e~~DlVIvLG 763 (890)
+++++|+|+.|+++ ++.+.+.++.+||.+ +|++|++++..+..+.. .+..+ .....+. ...++.+++|+||+||
T Consensus 3 ~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~vi~lG 80 (306)
T PRK03372 3 TASRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLDAEAVDLGATHPAPDDFRAMEVVD-ADPDAADGCELVLVLG 80 (306)
T ss_pred CCccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEeechhhhhccccccccccccccccc-chhhcccCCCEEEEEc
Confidence 57889999999886 688899999999987 59999998765443211 01000 0000000 0124445789999999
Q ss_pred CchHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccc
Q 002705 764 GDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFD 843 (890)
Q Consensus 764 GDGTlL~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ 843 (890)
||||||+|+|.+...++||+|||+|+||||++++++++++.|+++++|+| .+++|++|+|++.++|+... ..+
T Consensus 81 GDGT~L~aar~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y-----~i~~R~~L~~~v~~~g~~~~--~~~ 153 (306)
T PRK03372 81 GDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDY-----RVEERMTLDVTVRVGGEIVW--RGW 153 (306)
T ss_pred CCHHHHHHHHHhccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCc-----eEEEeeeEEEEEEECCEEEe--eee
Confidence 99999999999999999999999999999999999999999999999995 58999999999988887552 357
Q ss_pred eEeEEEeccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 844 VLNEVVVDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 844 ALNEVVI~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
||||+||.|+..++|+.++|+|||+++++|+||||||||||||++|+
T Consensus 154 ALNdvvi~r~~~~~~~~~~v~idg~~~~~~~~DGlIVsTPTGSTAYs 200 (306)
T PRK03372 154 ALNEASLEKADREGMLEVVLEVDGRPVSSFGCDGVLVSTPTGSTAYA 200 (306)
T ss_pred EEEeEEeecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHH
Confidence 99999999999999999999999999999999999999999999995
No 6
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=5.6e-38 Score=339.31 Aligned_cols=190 Identities=22% Similarity=0.373 Sum_probs=160.4
Q ss_pred cCCCcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhh---hhh-cCCCCccceeeeccCccccCCCccEEEE
Q 002705 687 KTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHD---IFA-RIPGFGFVQTFYLQDTSDLHERVDFVAC 761 (890)
Q Consensus 687 ~~~pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~---~l~-~~p~~~~v~~f~~~~~~el~e~~DlVIv 761 (890)
.+++++|+|+.|+++ ++.+.+.++.+||.+ +|++|++++.... .+. ..++. ...+..++.+.+|+||+
T Consensus 2 ~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~D~vi~ 74 (296)
T PRK04539 2 NSPFHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDEVGIKEGCIYTQDTVGC------HIVNKTELGQYCDLVAV 74 (296)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecccccccchhccccccc------cccchhhcCcCCCEEEE
Confidence 456889999999887 688899999999987 6999999764221 100 00010 00112344557999999
Q ss_pred EcCchHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCc
Q 002705 762 LGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKV 841 (890)
Q Consensus 762 LGGDGTlL~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~ 841 (890)
||||||||+|+|.+...++||+|||+|+||||++++++++++.|+++++|+| .+++||+|++.+.++|+.+. .
T Consensus 75 lGGDGT~L~aa~~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~-----~~~~r~~l~~~v~~~~~~~~--~ 147 (296)
T PRK04539 75 LGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYMTDKLLPVLEGKY-----LAEERILIEAALIREGKTAE--R 147 (296)
T ss_pred ECCcHHHHHHHHHhcccCCCEEEEecCCCeEeeccCHHHHHHHHHHHHcCCc-----eEEEeeeEEEEEEECCeeee--e
Confidence 9999999999999998999999999999999999999999999999999995 58999999999988776542 3
Q ss_pred cceEeEEEeccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 842 FDVLNEVVVDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 842 ~~ALNEVVI~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
.+||||++|.|+..++|+.++++|||+++++|+||||||||||||++|+
T Consensus 148 ~~ALNdvvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYs 196 (296)
T PRK04539 148 ALALNDAVLSRGGAGQMIEFEVFVNREFVYTQRSDGLIVSTPTGSTAYS 196 (296)
T ss_pred eeeehhhhhccCCcCceEEEEEEECCEEEEEEecCeEEEECCCcHHHHH
Confidence 5899999999999999999999999999999999999999999999995
No 7
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.8e-37 Score=336.50 Aligned_cols=191 Identities=19% Similarity=0.227 Sum_probs=158.5
Q ss_pred cEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCc--c-ceeeeccCccccCCCccEEEEEcCch
Q 002705 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFG--F-VQTFYLQDTSDLHERVDFVACLGGDG 766 (890)
Q Consensus 691 kkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~--~-v~~f~~~~~~el~e~~DlVIvLGGDG 766 (890)
++|+|+.|+.+ ++.+.+.++.+||.+ +|++++++++.++.+. .+... . -......+..++.+.+|++|+|||||
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG 79 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRASSSGGILG-YANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDG 79 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcC-ccccccccccccccccChhhcccCcCEEEEEeCcH
Confidence 47999999887 688899999999987 6999999876544331 11000 0 00000011134445789999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEe
Q 002705 767 VILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLN 846 (890)
Q Consensus 767 TlL~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALN 846 (890)
|||+|+|.+...++||+|||+|+||||++++++++++.|+++++|+| .+++|+||+|++.++++.+. ..+|||
T Consensus 80 TlL~aar~~~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y-----~ie~r~~L~~~v~~~~~~~~--~~~ALN 152 (305)
T PRK02649 80 TVLSAARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQY-----TIEERTMLTVSVMRGDQLRW--EALSLN 152 (305)
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCc-----EEEEeeeEEEEEEECCccee--eeeeee
Confidence 99999999999999999999999999999999999999999999995 58999999999987776442 357999
Q ss_pred EEEeccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 847 EVVVDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 847 EVVI~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
|++|.|+..++|+.++++|||+++++|+||||||||||||++|+
T Consensus 153 evvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYs 196 (305)
T PRK02649 153 EMVLHREPLTSMCHFEIAIGRHAPVDIAADGVILSTPTGSTAYS 196 (305)
T ss_pred eeeeecCCCccEEEEEEEECCEEEEEEecCeEEEeCCCcHHHHH
Confidence 99999999999999999999999999999999999999999995
No 8
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.3e-37 Score=332.79 Aligned_cols=188 Identities=19% Similarity=0.287 Sum_probs=154.7
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeecc-CccccCCCccEEEEEcCchHHH
Q 002705 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQ-DTSDLHERVDFVACLGGDGVIL 769 (890)
Q Consensus 692 kVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~-~~~el~e~~DlVIvLGGDGTlL 769 (890)
+|+|+.|+.+ ++.+.++++.+||.+ +|++|++++..+..+.....+. ...... +..++.+.+|+||+||||||||
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dlvi~lGGDGT~L 78 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEEKFLDFLKQDLKFH--PSYDTFSDNEELDGSADMVISIGGDGTFL 78 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhccccccc--cccccccchhhcccCCCEEEEECCcHHHH
Confidence 6999999886 688899999999987 6999999887654332100000 000000 1134445789999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEeEEE
Q 002705 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (890)
Q Consensus 770 ~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALNEVV 849 (890)
+|+|.+...++||+|||+|+||||++++++++++.|+++++|+| .+++|+||++.+ +++... ...+||||+|
T Consensus 79 ~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~~-----~i~~r~~L~~~~--~~~~~~-~~~~alNdvv 150 (292)
T PRK01911 79 RTATYVGNSNIPILGINTGRLGFLATVSKEEIEETIDELLNGDY-----TIEERSLLQLES--NPKLFG-ELNFALNEIA 150 (292)
T ss_pred HHHHHhcCCCCCEEEEecCCCCcccccCHHHHHHHHHHHHcCCc-----eEEEEeeEEEEE--cCCcce-eeeEEEEEEE
Confidence 99999998999999999999999999999999999999999995 589999999996 333221 1357999999
Q ss_pred eccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 850 VDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 850 I~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
|.|+..++|+.+++||||+++++|+||||||||||||++|+
T Consensus 151 i~r~~~~~~i~~~v~idg~~~~~~~~DGlIVsTPTGSTAYs 191 (292)
T PRK01911 151 ILKRDTSSMITVHTYLNGEYLNSYWADGLIVATPTGSTGYS 191 (292)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEeeceeEECCCCcHHHHH
Confidence 99999999999999999999999999999999999999995
No 9
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=7.3e-37 Score=330.17 Aligned_cols=188 Identities=20% Similarity=0.323 Sum_probs=160.6
Q ss_pred CCCcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCch
Q 002705 688 TTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (890)
Q Consensus 688 ~~pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDG 766 (890)
+..++|+|+.|+++ ++.+.+.++.+||.+ +|+++++++..+..+. .... ...+..++.+++|+||+|||||
T Consensus 3 ~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~-~~~~------~~~~~~~~~~~~d~vi~lGGDG 74 (292)
T PRK03378 3 NHFKCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVEQQIAHELQ-LKNV------KTGTLAEIGQQADLAIVVGGDG 74 (292)
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcC-cccc------cccchhhcCCCCCEEEEECCcH
Confidence 45778999999887 688899999999987 6999999886544321 1100 0011234455799999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEe
Q 002705 767 VILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLN 846 (890)
Q Consensus 767 TlL~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALN 846 (890)
|||+|+|.+...++||+|||+|+||||++++++++++.|+++++|+| .+++|++|++++.++++.. ...+|||
T Consensus 75 T~L~aa~~~~~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~~-----~i~~r~~L~~~v~~~~~~~--~~~~aLN 147 (292)
T PRK03378 75 NMLGAARVLARYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGHY-----ISEKRFLLEAQVCRHGQQK--RISTAIN 147 (292)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCcccccCHHHHHHHHHHHHcCCc-----eEEEEEEEEEEEEeCCceE--EeEEEEE
Confidence 99999999998899999999999999999999999999999999995 5899999999998776543 2368999
Q ss_pred EEEeccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 847 EVVVDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 847 EVVI~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
|+||.|+..++|+.++++|||+++++|+|||+||||||||++|+
T Consensus 148 dvvi~~~~~~~~i~~~v~idg~~~~~~~~DGlIvsTptGSTAYs 191 (292)
T PRK03378 148 EVVLHPGKVAHMIEFEVYIDDNFAFSQRSDGLIISTPTGSTAYS 191 (292)
T ss_pred EEEEccCCCccEEEEEEEECCEEEEEEEccEEEEeCCCchHHhH
Confidence 99999999999999999999999999999999999999999994
No 10
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=327.44 Aligned_cols=189 Identities=24% Similarity=0.369 Sum_probs=160.5
Q ss_pred cCCCcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCc
Q 002705 687 KTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (890)
Q Consensus 687 ~~~pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGD 765 (890)
++.+++|+|+.|.++ ++.+.+.++.+||++ +|++++++......+.. ..+. ..+..++.+.+|+||++|||
T Consensus 2 ~~~~~~v~iv~~~~~~~~~e~~~~i~~~L~~-~g~~v~v~~~~~~~~~~-~~~~------~~~~~~~~~~~d~vi~~GGD 73 (291)
T PRK02155 2 KSQFKTVALIGRYQTPGIAEPLESLAAFLAK-RGFEVVFEADTARNIGL-TGYP------ALTPEEIGARADLAVVLGGD 73 (291)
T ss_pred CCcCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCc-cccc------ccChhHhccCCCEEEEECCc
Confidence 456788999999886 688899999999987 69999998765432210 0000 01123444578999999999
Q ss_pred hHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceE
Q 002705 766 GVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVL 845 (890)
Q Consensus 766 GTlL~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~AL 845 (890)
||||+|+|.+...++|++|||+|+||||++++++++++.|+++++|+| .+++|++|+|.+.++++.+. .++||
T Consensus 74 Gt~l~~~~~~~~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~~-----~i~~r~~L~~~v~~~~~~~~--~~~Al 146 (291)
T PRK02155 74 GTMLGIGRQLAPYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNY-----EEEERMLLEARVVRDGEPIF--HALAF 146 (291)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCCc-----eEEEeEEEEEEEEECCeEEE--eeeee
Confidence 999999999988899999999999999999999999999999999995 58999999999987776542 35899
Q ss_pred eEEEeccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 846 NEVVVDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 846 NEVVI~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
||++|.|+..++|+.++|+|||+++++++||||||||||||++|+
T Consensus 147 Nev~v~~~~~~~~~~~~v~i~~~~~~~~~gDGlIVsTPtGSTAYs 191 (291)
T PRK02155 147 NDVVVNRSGFSGMVELRVSVDGRFMYNQRSDGLIVATPTGSTAYA 191 (291)
T ss_pred eheeeccCCCCceEEEEEEECCEEEEEEecCeEEEECCCchhhhh
Confidence 999999999999999999999999999999999999999999995
No 11
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=9.9e-36 Score=346.66 Aligned_cols=190 Identities=23% Similarity=0.379 Sum_probs=163.0
Q ss_pred cccCCCcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhc-CCCCccceeeeccCccccCCCccEEEEE
Q 002705 685 MWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFAR-IPGFGFVQTFYLQDTSDLHERVDFVACL 762 (890)
Q Consensus 685 ~W~~~pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~-~p~~~~v~~f~~~~~~el~e~~DlVIvL 762 (890)
.|..+|++|+||.|+++ ++.+.++++.+||.+ +|++|++++.....+.. .+.. . ....+ ..++|+||+|
T Consensus 285 ~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~~~~v~~~~~~~~~~~~~~~~~-----~--~~~~~-~~~~dlvi~l 355 (569)
T PRK14076 285 KWRIKPTKFGIVSRIDNEEAINLALKIIKYLDS-KGIPYELESFLYNKLKNRLNEE-----C--NLIDD-IEEISHIISI 355 (569)
T ss_pred hcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHH-CCCEEEEechhhhhhccccccc-----c--ccccc-ccCCCEEEEE
Confidence 69999999999999886 688999999999987 59999998765543321 0000 0 00012 2368999999
Q ss_pred cCchHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCcc
Q 002705 763 GGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVF 842 (890)
Q Consensus 763 GGDGTlL~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~ 842 (890)
|||||||+|+|.+...++||||||+|+||||++++++++.+.|+++++|+| .+++|++|+|++.++++.. ...
T Consensus 356 GGDGT~L~aa~~~~~~~~PilGin~G~lGFL~~~~~~~~~~~l~~~~~g~~-----~i~~r~~L~~~v~~~~~~~--~~~ 428 (569)
T PRK14076 356 GGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKEEIFKAIDSIISGEY-----EIEKRTKLSGFILKDGHQN--ILP 428 (569)
T ss_pred CCcHHHHHHHHHhcCCCCCEEEEcCCCCCcCcccCHHHHHHHHHHHHcCCc-----eEEEeEEEEEEEEECCcce--eee
Confidence 999999999999999999999999999999999999999999999999995 5899999999998776544 236
Q ss_pred ceEeEEEeccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 843 DVLNEVVVDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 843 ~ALNEVVI~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
+||||++|.|+..++|+.++|||||+++++|+||||||||||||++|+
T Consensus 429 ~alNdv~i~~~~~~~~~~~~v~i~~~~~~~~~~DGlivsTptGSTaYs 476 (569)
T PRK14076 429 SALNEVVITTKNPAKMLHFEVYVNGELVEEVRADGIIISTPTGSTAYS 476 (569)
T ss_pred EEEEEEEEccCCCCceEEEEEEECCEEEEEEECCEEEEeCCCchHHHH
Confidence 899999999999999999999999999999999999999999999995
No 12
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.5e-35 Score=318.75 Aligned_cols=186 Identities=24% Similarity=0.385 Sum_probs=158.0
Q ss_pred CcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTl 768 (890)
.++|+||.|+++ .+.+.++++.+||.+ +|+++++++...+.+... ... .....++.+.+|+||++||||||
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~~~~~~~~~~-~~~------~~~~~~~~~~~d~vi~~GGDGt~ 75 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDEETAEVLPGH-GLQ------TVSRKLLGEVCDLVIVVGGDGSL 75 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcc-ccc------ccchhhcccCCCEEEEEeCcHHH
Confidence 558999999887 688899999999987 599999987654332110 000 00112344578999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEeEE
Q 002705 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (890)
Q Consensus 769 L~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALNEV 848 (890)
|+++|.+...++||+|||+|+||||++++++++++.|+++++|+| .+++|+||+|.+.++|+.+. .++||||+
T Consensus 76 l~~~~~~~~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~~-----~i~~r~~L~~~v~~~~~~~~--~~~ALNev 148 (295)
T PRK01231 76 LGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGHY-----QEEERFLLEAEVRRGGEVIG--QGDALNDV 148 (295)
T ss_pred HHHHHHhcCCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCCc-----eEEEEEEEEEEEEECCcEEe--eeeEEEEE
Confidence 999999988999999999999999999999999999999999995 58999999999987766542 35899999
Q ss_pred EeccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 849 VVDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 849 VI~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
+|.|+..++|+.++|+|||+++++|+||||||||||||++|+
T Consensus 149 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlivsTptGSTAY~ 190 (295)
T PRK01231 149 VLHPGKSTRMIEFELYIDGQFVCSQRSDGLIVSTPTGSTAYA 190 (295)
T ss_pred EEccCCCCcEEEEEEEECCEEEEEEEcceEEEeCCCCchhhh
Confidence 999999999999999999999999999999999999999995
No 13
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=5.3e-35 Score=312.73 Aligned_cols=171 Identities=22% Similarity=0.415 Sum_probs=146.7
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002705 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (890)
Q Consensus 692 kVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~ 770 (890)
+|+|+.|+.+ ++.+.++++.+|| + .|++++++.+.++.+. ... .+..+. ++|++|+||||||||+
T Consensus 2 ~i~iv~~~~~~~~~~~~~~i~~~l-~-~g~~~~~~~~~~~~~~-~~~---------~~~~~~--~~D~vi~lGGDGT~L~ 67 (271)
T PRK01185 2 KVAFVIRKDCKRCIKIAKSIIELL-P-PDWEIIYEMEAAKALG-MDG---------LDIEEI--NADVIITIGGDGTILR 67 (271)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHH-h-cCCEEEEechhhhhcC-ccc---------Cccccc--CCCEEEEEcCcHHHHH
Confidence 5999999876 6888999999999 5 4899998876544331 000 011222 6899999999999999
Q ss_pred HHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEeEEEe
Q 002705 771 ASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 850 (890)
Q Consensus 771 Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALNEVVI 850 (890)
|+|.+. +||+|||+|+||||++++++++++.|+++++|+| .+++|++|++.+ +|+.. .+||||++|
T Consensus 68 a~~~~~---~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~-----~i~~r~~L~~~v--~g~~~----~~aLNdvvv 133 (271)
T PRK01185 68 TLQRAK---GPILGINMGGLGFLTEIEIDEVGSAIKKLIRGEY-----FIDERMKLKVYI--NGERL----EDCTNEAVI 133 (271)
T ss_pred HHHHcC---CCEEEEECCCCccCcccCHHHHHHHHHHHHcCCc-----EEEEeeEEEEEE--CCcEe----EEEEEEEEE
Confidence 999875 5999999999999999999999999999999995 589999999998 55432 479999999
Q ss_pred ccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 851 DRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 851 ~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
.|+..++|+++++||||+++.+|+||||||||||||++|+
T Consensus 134 ~~~~~~~~i~~~v~i~~~~~~~~~~DGlIVsTPTGSTAYs 173 (271)
T PRK01185 134 HTDRIAKIRQFKIYYDGHFLDTFKADGVIVATPTGSTSYS 173 (271)
T ss_pred ecCCCCcEEEEEEEECCEEEEEEEeeEEEEeCCCchHHHH
Confidence 9999999999999999999999999999999999999995
No 14
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=4.7e-35 Score=313.18 Aligned_cols=169 Identities=24% Similarity=0.381 Sum_probs=144.0
Q ss_pred HHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEe
Q 002705 707 AKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFN 786 (890)
Q Consensus 707 a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN 786 (890)
++++.+||.+ +|++|++++..+..+. .+.. ...+..++.+.+|+||+||||||||+|+|.+.+.++||+|||
T Consensus 2 ~~~l~~~l~~-~g~~v~~~~~~~~~~~-~~~~------~~~~~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 2 HKNLFHWLKE-RGYQVLVEKEIAEQLN-LPEN------HLASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred HHHHHHHHHH-CCCEEEEecchhhhcC-cccc------ccCChHHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 5788999987 6999999876554331 1100 000113445578999999999999999999998999999999
Q ss_pred CCCcccccCCCcccHHHHHHHHHc-CCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEeEEEeccCCCCccEEEEEEE
Q 002705 787 LGSLGFLTSHPFEDYRQDLRQVIY-GNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYE 865 (890)
Q Consensus 787 ~G~LGFLte~~~ed~~~~L~~Il~-G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALNEVVI~Rg~~~~li~ieVyI 865 (890)
+|+||||++++++++.+.|+++++ |+| .+++|++|+|++.++|+.+. ..+||||++|.|+..++|+.++++|
T Consensus 74 ~G~lGFL~~~~~~~~~~~l~~~~~~g~~-----~i~~r~~L~~~v~~~~~~~~--~~~alNev~i~~~~~~~~~~~~v~i 146 (272)
T PRK02231 74 RGNLGFLTDIDPKNAYEQLEACLERGEF-----FVEERFLLEAKIERNGKIIA--TSNALNEVVIHPAKIAHMIDFHVYI 146 (272)
T ss_pred CCCCcccccCCHHHHHHHHHHHHhcCCc-----eEEEeeeEEEEEEECCeEee--eeEEEEEEEEecCCCCceEEEEEEE
Confidence 999999999999999999999999 985 58999999999987776542 3589999999999999999999999
Q ss_pred CCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 866 HDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 866 Dg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
||+++++|+||||||||||||++|+
T Consensus 147 ~~~~~~~~~~DGlIVsTPtGSTAY~ 171 (272)
T PRK02231 147 DDKFAFSQRSDGLIISTPTGSTAYS 171 (272)
T ss_pred CCEEEEEEecCeEEEECCCcHHHHH
Confidence 9999999999999999999999995
No 15
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=6.7e-35 Score=311.14 Aligned_cols=160 Identities=17% Similarity=0.194 Sum_probs=140.8
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHH
Q 002705 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (890)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~A 771 (890)
+|+|+.+..+++.+.++++.+||.+ +|+++ + .+++|++|+||||||||+|
T Consensus 2 ~i~Ii~~~~~~~~~~~~~l~~~l~~-~g~~~--~---------------------------~~~~Dlvi~iGGDGT~L~a 51 (265)
T PRK04885 2 KVAIISNGDPKSKRVASKLKKYLKD-FGFIL--D---------------------------EKNPDIVISVGGDGTLLSA 51 (265)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH-cCCcc--C---------------------------CcCCCEEEEECCcHHHHHH
Confidence 5899998655788999999999976 47652 1 1257999999999999999
Q ss_pred HHhcCC--CCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEeEEE
Q 002705 772 SNLFRG--AVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (890)
Q Consensus 772 ar~~~~--~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALNEVV 849 (890)
+|.+.+ .++||+|||+|+||||++++++++++.|+++++|+| .+++|++|++++.++++.. ...+||||++
T Consensus 52 ~~~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y-----~i~~r~~L~~~v~~~~~~~--~~~~alNev~ 124 (265)
T PRK04885 52 FHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALAKDPG-----QVVSYPLLEVKITYEDGEK--EKYLALNEAT 124 (265)
T ss_pred HHHhcccCCCCeEEEEeCCCceecccCCHHHHHHHHHHHHcCCc-----eEEEEeeEEEEEEeCCCcE--eeeeeeeeee
Confidence 999987 799999999999999999999999999999999995 5899999999987655432 1357999999
Q ss_pred eccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 850 VDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 850 I~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
|.|+. +++.+++||||+++++|+||||||||||||++|+
T Consensus 125 i~~~~--~~~~~~v~id~~~~~~~~gDGlIVsTptGSTAYs 163 (265)
T PRK04885 125 IKRIE--GTLVADVYINGVLFERFRGDGLCVSTPTGSTAYN 163 (265)
T ss_pred eccCC--ceEEEEEEECCEEEEEEEcCEEEEECCCChHHHH
Confidence 99875 7999999999999999999999999999999995
No 16
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.5e-34 Score=305.40 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=142.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHH
Q 002705 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (890)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~A 771 (890)
+++|+.++.+++.+.++++.+||.+ +|+++.++ . +++|++|+||||||||+|
T Consensus 4 ~i~iv~~~~~~a~~~~~~l~~~l~~-~g~~~~~~--------------------------~-~~~D~vi~lGGDGT~L~a 55 (264)
T PRK03501 4 NLFFFYKRDKELVEKVKPLKKIAEE-YGFTVVDH--------------------------P-KNANIIVSIGGDGTFLQA 55 (264)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH-CCCEEEcC--------------------------C-CCccEEEEECCcHHHHHH
Confidence 7999999888888999999999987 58877531 1 357999999999999999
Q ss_pred HHhcCCC-CCcEEEEeC-CCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEeEEE
Q 002705 772 SNLFRGA-VPPVISFNL-GSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (890)
Q Consensus 772 ar~~~~~-~~PILGIN~-G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALNEVV 849 (890)
+|.+... .+||+|||+ |+||||++++++++++.|+++++|+| .+++|++|++.+ +++. ..+||||++
T Consensus 56 ~~~~~~~~~~pilgIn~~G~lGFL~~~~~~~~~~~l~~i~~g~~-----~~~~r~~l~~~v--~~~~----~~~alNevv 124 (264)
T PRK03501 56 VRKTGFREDCLYAGISTKDQLGFYCDFHIDDLDKMIQAITKEEI-----EVRKYPTIEVTV--DGST----SFYCLNEFS 124 (264)
T ss_pred HHHhcccCCCeEEeEecCCCCeEcccCCHHHHHHHHHHHHcCCc-----EEEEeeeEEEEE--CCcc----ceEEEEEEE
Confidence 9998765 799999999 99999999999999999999999995 589999999997 4432 257999999
Q ss_pred eccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 850 VDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 850 I~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
| ++..++|+.++|+|||+++++|+||||||||||||++|+
T Consensus 125 i-~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPtGSTAY~ 164 (264)
T PRK03501 125 I-RSSIIKTFVIDVYIDDLHFETFRGDGMVVSTPTGSTAYN 164 (264)
T ss_pred E-cCCCCceEEEEEEECCEEeEEEecCEEEEeCCCchHHHH
Confidence 9 778889999999999999999999999999999999995
No 17
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-33 Score=303.21 Aligned_cols=180 Identities=26% Similarity=0.428 Sum_probs=156.9
Q ss_pred cEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002705 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (890)
Q Consensus 691 kkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL 769 (890)
++|+|+.+++. ++...++++..|+.. .+..+.+++...+.+... . .+ .+.-.+.+|+|+++|||||+|
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~--~----~~----~~~~~~~~d~ivvlGGDGtlL 69 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKF-KGVTVEVDQELAEELKDF--A----DY----VDDDEEKADLIVVLGGDGTLL 69 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHh-cCceEEEechhhhhcccc--c----cc----ccccccCceEEEEeCCcHHHH
Confidence 47899999987 588889999999986 588999888877665321 0 00 011236799999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEeEEE
Q 002705 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (890)
Q Consensus 770 ~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALNEVV 849 (890)
+++|++...++||+|||+|+|||||+++++++++.++++++|+| .+++|++|++.+.+.+ . ...+||||++
T Consensus 70 ~~~~~~~~~~~pilgin~G~lGFLt~~~~~~~~~~~~~~~~~~~-----~~~~r~~l~~~v~~~~--~--~~~~aLNEv~ 140 (281)
T COG0061 70 RAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALDALLEGEY-----RIEERLLLEVSVNRGD--I--RRALALNEVV 140 (281)
T ss_pred HHHHHhccCCCCEEEEeCCCcccccccCHHHHHHHHHHHhcCce-----EEEEeEEEEEEEEeCC--c--cccceeeEEE
Confidence 99999999999999999999999999999999999999999874 5899999999997654 2 3578999999
Q ss_pred eccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 850 VDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 850 I~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
|+|+..++|+.+++||||+++++++||||||||||||++|+
T Consensus 141 I~~~~~~~~~~~~v~id~~~~~~~r~DGliVsTPTGSTAY~ 181 (281)
T COG0061 141 IHRGSPAKMIEFEVYIDDEFFESFRGDGLIVSTPTGSTAYN 181 (281)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEEcCCcHHHHh
Confidence 99999999999999999999999999999999999999995
No 18
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.5e-33 Score=302.44 Aligned_cols=177 Identities=26% Similarity=0.398 Sum_probs=149.2
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHHH
Q 002705 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (890)
Q Consensus 692 kVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTlL 769 (890)
+|+||.|+++ ++.+.++++.+||.+ +|++|.+++........... ....++ ..++|+||++|||||||
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~~~~~~~~~~~~---------~~~~~~~~~~~d~vi~iGGDGTlL 71 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDSETYEHLPEFSE---------EDVLPLEEMDVDFIIAIGGDGTIL 71 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcccc---------cccccccccCCCEEEEEeCcHHHH
Confidence 7999999886 688899999999987 69999987643322110000 000111 23689999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEeEEE
Q 002705 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (890)
Q Consensus 770 ~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALNEVV 849 (890)
+++| +...++||+|||+|++|||++++++++.+.|+++++|+| .+++|++|++.+ +|+.. ++||||++
T Consensus 72 ~a~~-~~~~~~pi~gIn~G~lGFl~~~~~~~~~~~l~~i~~g~~-----~~~~r~~l~~~~--~~~~~----~~alNdv~ 139 (277)
T PRK03708 72 RIEH-KTKKDIPILGINMGTLGFLTEVEPEETFFALSRLLEGDY-----FIDERIKLRVYI--NGENV----PDALNEVV 139 (277)
T ss_pred HHHH-hcCCCCeEEEEeCCCCCccccCCHHHHHHHHHHHHcCCc-----eEEEeEEEEEEE--CCeEe----EEEeeeEE
Confidence 9999 777899999999999999999999999999999999995 589999999987 45432 57999999
Q ss_pred eccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 850 VDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 850 I~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
|.++..++|+.++|+|||+++++|+||||||||||||++|+
T Consensus 140 v~~~~~~~~~~~~v~idg~~~~~~~gDGvIvsTptGSTAY~ 180 (277)
T PRK03708 140 ILTGIPGKIIHLKYYVDGELADEVRADGLIISTPTGSTAYA 180 (277)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHH
Confidence 99999999999999999999999999999999999999995
No 19
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.9e-32 Score=297.50 Aligned_cols=181 Identities=22% Similarity=0.308 Sum_probs=149.4
Q ss_pred CcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTl 768 (890)
.++|+||.++++ .+.+.+.++.+||.+ .|++|.++....+... ... + .......+|+||++||||||
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~-~g~~v~v~~~~~~~~~-~~~------~----~~~~~~~~d~vi~~GGDGT~ 70 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEA-RGCKVLMGPSGPKDNP-YPV------F----LASASELIDLAIVLGGDGTV 70 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecCchhhcc-ccc------h----hhccccCcCEEEEECCcHHH
Confidence 568999999886 577889999999976 6999988765433211 000 0 12234568999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeC-CCcccccCCC--cccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCe-----ecCCC
Q 002705 769 LHASNLFRGAVPPVISFNL-GSLGFLTSHP--FEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGK-----AMPGK 840 (890)
Q Consensus 769 L~Aar~~~~~~~PILGIN~-G~LGFLte~~--~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~-----~v~~~ 840 (890)
|++++.+...++||+|||+ |+||||+++. .++ ++.|+++++|+| .+++|++|+|++.+.++ .. .
T Consensus 71 l~~~~~~~~~~~pv~gin~~G~lGFL~~~~~~~~~-~~~l~~i~~g~~-----~i~~r~~L~~~~~~~~~~~~~~~~--~ 142 (305)
T PRK02645 71 LAAARHLAPHDIPILSVNVGGHLGFLTHPRDLLQD-ESVWDRLQEDRY-----AIERRMMLQARVFEGDRSNEEPVS--E 142 (305)
T ss_pred HHHHHHhccCCCCEEEEecCCcceEecCchhhcch-HHHHHHHHcCCc-----eEEEeeEEEEEEEeCCcccccccc--c
Confidence 9999999989999999999 8999999985 445 899999999995 58999999999987653 11 2
Q ss_pred ccceEeEEEeccCCCCccEE--EEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 841 VFDVLNEVVVDRGSNPYLSK--IECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 841 ~~~ALNEVVI~Rg~~~~li~--ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
.++||||++|.++..++++. ++|+|||+++++|+||||||||||||++|+
T Consensus 143 ~~~AlNev~i~~~~~~~~~~~~~~v~id~~~~~~~~gDGlIVsTPtGSTAYs 194 (305)
T PRK02645 143 SYYALNDFYLKPASEDRSPTCILELEIDGEVVDQYQGDGLIVSTPTGSTAYT 194 (305)
T ss_pred ceEEEeeEEEeccCcccccceEEEEEECCEEEEEEecCEEEEecCCChhhhh
Confidence 46899999999998788764 999999999999999999999999999995
No 20
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=100.00 E-value=5.3e-33 Score=298.59 Aligned_cols=192 Identities=26% Similarity=0.396 Sum_probs=158.0
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCC--Cccce---------eeeccCccccCCCccEE
Q 002705 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPG--FGFVQ---------TFYLQDTSDLHERVDFV 759 (890)
Q Consensus 692 kVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~--~~~v~---------~f~~~~~~el~e~~DlV 759 (890)
||+|+.|+.+ ++.+.++++.+||.++.++.++++..+.+.+...-. ..... ...........+++|+|
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i 80 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLI 80 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEE
Confidence 6999999996 789999999999988448999988876654321100 00000 00111122336789999
Q ss_pred EEEcCchHHHHHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCe--ec
Q 002705 760 ACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGK--AM 837 (890)
Q Consensus 760 IvLGGDGTlL~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~--~v 837 (890)
|+||||||+|+++|.+.+.++||+|||+|++|||++++++++.+.++++++|+| .+++|++|++.+.+.+. ..
T Consensus 81 i~lGGDGT~L~~~~~~~~~~~Pilgin~G~lgfl~~~~~~~~~~~l~~~~~g~~-----~~~~r~~l~~~~~~~~~~~~~ 155 (285)
T PF01513_consen 81 IVLGGDGTFLRAARLFGDYDIPILGINTGTLGFLTEFEPEDIEEALEKILAGEY-----SIEERMRLEVSVDRKKGAEIA 155 (285)
T ss_dssp EEEESHHHHHHHHHHCTTST-EEEEEESSSSTSSSSEEGCGHHHHHHHHHHTHC-----EEEEEEEEEEEEEETTE-CEE
T ss_pred EEECCCHHHHHHHHHhccCCCcEEeecCCCccccccCCHHHHHHHHHHHhcCCe-----EEEEeeeEEEEEecCCcccee
Confidence 999999999999999999999999999999999999999999999999999985 58999999999987665 22
Q ss_pred CCCccceEeEEEeccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 838 PGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 838 ~~~~~~ALNEVVI~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
..++||||++|.++..++++.+++++|++++++++|||+||||||||++|+
T Consensus 156 --~~~~alNei~i~~~~~~~~~~~~v~i~~~~~~~~~~dGlivsTptGSTay~ 206 (285)
T PF01513_consen 156 --LIDYALNEIVISRGRASRMIELEVFIDGEFLETYRGDGLIVSTPTGSTAYS 206 (285)
T ss_dssp --EEEEESSEEEEEESSTSSEEEEEEEETTEEEEEEEESEEEEEETGGGGTHH
T ss_pred --eeeeeecCeeEEcCCCccceEEEEEECCEEEEEEEEeeeEEEecCCceEEE
Confidence 246899999999999999999999999999999999999999999999984
No 21
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2e-32 Score=290.79 Aligned_cols=160 Identities=21% Similarity=0.208 Sum_probs=139.5
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHH
Q 002705 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (890)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~A 771 (890)
+++|++|+. +.+.+.++.++|.+ .|+.+.++++.. +...++|+||+||||||||+|
T Consensus 2 ~~~~~~~~~--~~~~~~~~~~~l~~-~~~~~~~~~~~~---------------------~~~~~~d~vi~iGGDGT~L~a 57 (256)
T PRK14075 2 KLGIFYREE--KEKEAKFLKEKISK-EHEVVEFCEASA---------------------SGKVTADLIIVVGGDGTVLKA 57 (256)
T ss_pred EEEEEeCcc--HHHHHHHHHHHHHH-cCCeeEeecccc---------------------cccCCCCEEEEECCcHHHHHH
Confidence 678886665 66788999999987 588777654311 113478999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEeEEEec
Q 002705 772 SNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVD 851 (890)
Q Consensus 772 ar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALNEVVI~ 851 (890)
+|.+ ++||+|||+|+||||++++++++++.|+++++|+| .+++|++|++.+. ++ .++||||++|.
T Consensus 58 ~~~~---~~Pilgin~G~lGfl~~~~~~~~~~~l~~~~~g~~-----~~~~r~~l~~~~~-~~------~~~alNev~i~ 122 (256)
T PRK14075 58 AKKV---GTPLVGFKAGRLGFLSSYTLEEIDRFLEDLKNWNF-----REEKRWFLKIESE-LG------NHLALNDVTLE 122 (256)
T ss_pred HHHc---CCCEEEEeCCCCccccccCHHHHHHHHHHHHcCCc-----EEEEeeEEEEEEc-CC------cEEEEEEEEEe
Confidence 9998 79999999999999999999999999999999995 5899999999873 22 25799999999
Q ss_pred cCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 852 RGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 852 Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
++..+++++++|+|||+.+.+|+||||||||||||++|+
T Consensus 123 ~~~~~~~~~~~v~i~~~~~~~~~~DG~ivsTptGSTaY~ 161 (256)
T PRK14075 123 RDPSQKMVEIEVSFEDHSSMWFFADGVVISTPTGSTAYS 161 (256)
T ss_pred cCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHH
Confidence 999999999999999999999999999999999999995
No 22
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.97 E-value=3.1e-31 Score=281.93 Aligned_cols=150 Identities=21% Similarity=0.236 Sum_probs=129.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHH
Q 002705 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (890)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~A 771 (890)
++.|+.++.+++.+.+.+|.+++.. .++ ..+++|+||+||||||||+|
T Consensus 2 ~~~i~~~~~~~s~~~~~~l~~~~~~-~~~-------------------------------~~~~~D~vi~iGGDGT~L~a 49 (259)
T PRK00561 2 KYKIFASTTPQTEPVLPKLKKVLKK-KLA-------------------------------VEDGADYLFVLGGDGFFVST 49 (259)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhh-CCC-------------------------------ccCCCCEEEEECCcHHHHHH
Confidence 6889999998888888888888754 121 01357999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCcccccCCCcccHHH-HHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCccceEeEEEe
Q 002705 772 SNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQ-DLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 850 (890)
Q Consensus 772 ar~~~~~~~PILGIN~G~LGFLte~~~ed~~~-~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~~ALNEVVI 850 (890)
+|.+...++||+|||+|+||||++++++++++ .++++.+ |. +++|++|++.+ +++ ..+||||++|
T Consensus 50 ~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~~~~~l~~--~~-----~~~r~~L~~~~--~~~-----~~~AlNE~vi 115 (259)
T PRK00561 50 AANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFANKLDQ--LK-----FTQIDLLEVQI--DDQ-----IHLVLNELAV 115 (259)
T ss_pred HHHhcCCCCcEEEEecCCCccccccCHHHHHHHHHHHHhh--CC-----eEEEEEEEEEE--CCC-----eeEEEEEEEE
Confidence 99999999999999999999999999999999 7777755 32 68999999987 343 2489999999
Q ss_pred ccCCCCccEEEEEEECCeEeEEEecCeEEEcCCCCCcCCC
Q 002705 851 DRGSNPYLSKIECYEHDRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 851 ~Rg~~~~li~ieVyIDg~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
.++. ++.++|+|||+++++++||||||||||||++|+
T Consensus 116 ~~~~---~~~~~v~idg~~~~~~~gDGlIVsTPtGSTAYs 152 (259)
T PRK00561 116 YTNT---AYPINIFIDNEFWEKYRGSGLLIGPRTGSTALA 152 (259)
T ss_pred ccCC---ceEEEEEECCEEEEEEecCEEEEeCchHHHHHH
Confidence 9865 789999999999999999999999999999995
No 23
>PLN02929 NADH kinase
Probab=99.97 E-value=2.7e-30 Score=279.33 Aligned_cols=159 Identities=22% Similarity=0.263 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHHHHhcCCCCC
Q 002705 701 PALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVP 780 (890)
Q Consensus 701 ~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~Aar~~~~~~~ 780 (890)
+...+.+..+.++|.+ .|+++...... +..+...++|+||+||||||||+|+|.+ ..++
T Consensus 30 ~~h~~~~~~~~~~L~~-~gi~~~~v~r~-------------------~~~~~~~~~Dlvi~lGGDGT~L~aa~~~-~~~i 88 (301)
T PLN02929 30 KVHKDTVNFCKDILQQ-KSVDWECVLRN-------------------ELSQPIRDVDLVVAVGGDGTLLQASHFL-DDSI 88 (301)
T ss_pred hhhHHHHHHHHHHHHH-cCCEEEEeecc-------------------ccccccCCCCEEEEECCcHHHHHHHHHc-CCCC
Confidence 3456678899999987 58887432110 0012235789999999999999999999 8899
Q ss_pred cEEEEeCC------------------CcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEeCCeecCCCcc
Q 002705 781 PVISFNLG------------------SLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVF 842 (890)
Q Consensus 781 PILGIN~G------------------~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r~G~~v~~~~~ 842 (890)
||||||+| ++|||++++++++++.|+++++|+| .+++|+||++.+ +|+.. ..
T Consensus 89 PvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~~-----~~~~r~~L~~~v--~g~~~---~~ 158 (301)
T PLN02929 89 PVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGRL-----KPTELSRISTVV--NGTLL---ET 158 (301)
T ss_pred cEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCCc-----eEEEeeeEEEEe--cCCcc---cc
Confidence 99999999 7999999999999999999999995 589999999998 45543 23
Q ss_pred ceEeEEEeccCCCCccEEEEEEEC-----CeEeEEEecCeEEEcCCCCCcCCC
Q 002705 843 DVLNEVVVDRGSNPYLSKIECYEH-----DRLITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 843 ~ALNEVVI~Rg~~~~li~ieVyID-----g~~lt~~rgDGVIVSTPtg~~~~~ 890 (890)
+||||++|.++..++++.++++|| |+++.+++||||||||||||++|+
T Consensus 159 ~ALNEv~I~~~~~~~~~~~~v~i~~~g~~~~~~~~~~~DGliVsTpTGSTAY~ 211 (301)
T PLN02929 159 PALNDVLIAHPSPAAVSRFSFRVGRQGGSSGPLINVRSSGLRVSTAAGSTAAM 211 (301)
T ss_pred eEeeEEEEccCCCccEEEEEEEEcCccCCCceeEEeecCcEEEeCCccHHHHH
Confidence 899999999999999999999999 889999999999999999999984
No 24
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=99.95 E-value=1.5e-28 Score=259.80 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=105.8
Q ss_pred CCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCCCcccccC-CCcccHHHHHHHHHcCCCCCCcceeeeeeEEEEEEEe
Q 002705 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTS-HPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFR 832 (890)
Q Consensus 754 e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~G~LGFLte-~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe~~v~r 832 (890)
+++|+||+||||||||+|+|.+...++||+|||+|+||||++ ++++++.+.|+++..+. ++.|++ ++.. .
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G~lGFL~~~~~~~e~~~~l~~~~~~~-------~~~l~~-~~~~-~ 94 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSEDDLLERIAAAEPTV-------LHPLRM-TATD-V 94 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCCCCcccCCCCHHHHHHHHHHhhcCc-------EEEEEE-EEEE-C
Confidence 358999999999999999999999999999999999999996 89999999999988664 344444 4332 2
Q ss_pred CCeecCCCccceEeEEEeccCCCCccEEEEEEECCeE-eEEEecCeEEEcCCCCCcCCC
Q 002705 833 NGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRL-ITKVRPVNCFLNVKIFFFNYA 890 (890)
Q Consensus 833 ~G~~v~~~~~~ALNEVVI~Rg~~~~li~ieVyIDg~~-lt~~rgDGVIVSTPtg~~~~~ 890 (890)
+|+.. ..+||||++|.|+. ++++.++++|||++ +.+++||||||||||||++|+
T Consensus 95 ~~~~~---~~~ALNev~i~~~~-~~~~~~~v~idg~~~~~~~~gDGlIVSTPtGSTAY~ 149 (246)
T PRK04761 95 SGEVH---EALAINEVSLFRQT-RQAAKLRISIDGKVRMEELVCDGVLVATPAGSTAYN 149 (246)
T ss_pred CCcEe---eeeeeeheeeecCC-CceEEEEEEECCEEEEEEEecCeEEEeCCcCHHHHH
Confidence 34321 35899999999987 78999999999996 999999999999999999985
No 25
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.87 E-value=2.2e-22 Score=199.59 Aligned_cols=132 Identities=21% Similarity=0.256 Sum_probs=82.0
Q ss_pred CCcCCCCceeEEecCCCcccccCCCcccEEEcCC---CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCc
Q 002705 241 IHTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQ---VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKV 317 (890)
Q Consensus 241 ~~~~i~Nw~~V~ls~~~~~~~~~~~e~~LYRSgq---pT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI 317 (890)
|++++++|.... ...++ ...|||||. +|++|++.|.++||+||||||++. |....| .....|+
T Consensus 1 N~RDlGg~~~~~-------g~~ir-~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~-E~~~~p-----~~~~~g~ 66 (164)
T PF13350_consen 1 NFRDLGGYPTAD-------GRRIR-PGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPT-ERERAP-----DPLIDGV 66 (164)
T ss_dssp S-EEGGGTST-----------TS--TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HH-HHHHHS---------TT-
T ss_pred CccccCCCCccc-------eeeec-CCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCcc-ccccCC-----CCCcCCc
Confidence 456666665431 11222 359999995 589999999999999999999986 221111 2234599
Q ss_pred EEEEEecCCCCCCC-----------------------------HHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHH
Q 002705 318 ELIKIPVEVRTAPT-----------------------------MEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRW 368 (890)
Q Consensus 318 ~yVhIPV~d~~~ps-----------------------------~E~v~af~~iL~d~~~~PVLVHCtAGKDRTGalvaLl 368 (890)
+++|+|+....... .+.+.++++.+.+.. +|+||||++||||||++++++
T Consensus 67 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~all 145 (164)
T PF13350_consen 67 QYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALL 145 (164)
T ss_dssp EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHH
T ss_pred eeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHH
Confidence 99999998544331 133456677775555 799999999999999999999
Q ss_pred HHhCCCCHHHHHHHhhhcc
Q 002705 369 RQYMARCASQISGQTITSN 387 (890)
Q Consensus 369 r~~lGvs~ddIiaDYL~sn 387 (890)
+.++||+.++|++||++||
T Consensus 146 l~~lGV~~~~I~~DY~lSn 164 (164)
T PF13350_consen 146 LSLLGVPDEDIIADYLLSN 164 (164)
T ss_dssp HHHTT--HHHHHHHHHGGG
T ss_pred HHHcCCCHHHHHHHHHhcC
Confidence 9999999999999999997
No 26
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.83 E-value=2.1e-20 Score=187.20 Aligned_cols=122 Identities=23% Similarity=0.272 Sum_probs=88.0
Q ss_pred CCCceeEEecCCCcccccCCCcccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEec
Q 002705 245 FANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPV 324 (890)
Q Consensus 245 i~Nw~~V~ls~~~~~~~~~~~e~~LYRSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV 324 (890)
..||+.|. +.|||||+|++.++++|+.+|+||||+||+++ .. .....+++..||+++|+|+
T Consensus 4 P~nF~~V~--------------~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~--~~---~~~~~f~~~~~I~l~~~~~ 64 (164)
T PF03162_consen 4 PLNFGMVE--------------PGVYRSAQPTPANFPFLERLGLKTIINLRPEP--PS---QDFLEFAEENGIKLIHIPM 64 (164)
T ss_dssp -TT-EEEE--------------TTEEEESS--HHHHHHHHHHT-SEEEE--SS--------HHHHHHHHHTT-EEEE---
T ss_pred CccccCCC--------------CCccCCCCCChhhHHHHHHCCCceEEEecCCC--CC---HHHHHHHhhcCceEEEecc
Confidence 56899886 49999999999999999999999999999875 11 1334578899999999999
Q ss_pred CCCCC----CCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhCCCCHHHHHHHhhh
Q 002705 325 EVRTA----PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTIT 385 (890)
Q Consensus 325 ~d~~~----ps~E~v~af~~iL~d~~~~PVLVHCtAGKDRTGalvaLlr~~lGvs~ddIiaDYL~ 385 (890)
..... ++.+.+.+.++++.+..++||||||..|+||||++++|+|.+.||+.+.|+++|-.
T Consensus 65 ~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 65 SSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRR 129 (164)
T ss_dssp ----GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHH
T ss_pred ccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHH
Confidence 86554 56788888888877888999999999999999999999999999999999999974
No 27
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.82 E-value=1e-19 Score=176.49 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=96.3
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchh--hhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh
Q 002705 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYE--AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (890)
Q Consensus 266 e~~LYRSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~--a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~ 343 (890)
++.+|||+|++++|++.|+++|||||||||++. |....+ ..+.+.++..|++|+|+|+.. ..++++++.+|.++++
T Consensus 6 ~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~-E~~~~p~~~~~~~~a~~~gl~y~~iPv~~-~~~~~~~v~~f~~~~~ 83 (135)
T TIGR01244 6 TEHLYVSPQLTKADAAQAAQLGFKTVINNRPDR-EEESQPDFAQIKAAAEAAGVTYHHQPVTA-GDITPDDVETFRAAIG 83 (135)
T ss_pred CCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCC-CCCCCCCHHHHHHHHHHCCCeEEEeecCC-CCCCHHHHHHHHHHHH
Confidence 358999999999999999999999999999985 222222 122345677899999999995 4578999999999995
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHHhCCCCHHHHHHHh
Q 002705 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQT 383 (890)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGalvaLlr~~lGvs~ddIiaDY 383 (890)
..++|||+||++|| |||+++++++...|++.++|+++-
T Consensus 84 -~~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~ 121 (135)
T TIGR01244 84 -AAEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRA 121 (135)
T ss_pred -hCCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 56799999999999 999999999888999999998764
No 28
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.74 E-value=7.4e-18 Score=159.00 Aligned_cols=101 Identities=28% Similarity=0.379 Sum_probs=73.6
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcc--hhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh
Q 002705 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNF--YEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (890)
Q Consensus 266 e~~LYRSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~--~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~ 343 (890)
+..||.||||+++|++.|+++|||||||||++. |++. ....+.+.++..|++|+|+||. ...++.+++.+|.++++
T Consensus 6 ~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~-E~~~qp~~~~~~~~a~~~Gl~y~~iPv~-~~~~~~~~v~~f~~~l~ 83 (110)
T PF04273_consen 6 SDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDG-EEPGQPSSAEEAAAAEALGLQYVHIPVD-GGAITEEDVEAFADALE 83 (110)
T ss_dssp ETTEEEECS--HHHHHHHHHCT--EEEE-S-TT-STTT-T-HHCHHHHHHHCT-EEEE-----TTT--HHHHHHHHHHHH
T ss_pred CCCeEECCCCCHHHHHHHHHCCCcEEEECCCCC-CCCCCCCHHHHHHHHHHcCCeEEEeecC-CCCCCHHHHHHHHHHHH
Confidence 358999999999999999999999999999986 3322 2234667889999999999999 46789999999999995
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHH
Q 002705 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (890)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGalvaLlr~ 370 (890)
..++|||+||++|. |.+++|+|...
T Consensus 84 -~~~~Pvl~hC~sG~-Ra~~l~~l~~~ 108 (110)
T PF04273_consen 84 -SLPKPVLAHCRSGT-RASALWALAQA 108 (110)
T ss_dssp -TTTTSEEEE-SCSH-HHHHHHHHHHH
T ss_pred -hCCCCEEEECCCCh-hHHHHHHHHhh
Confidence 56789999999999 99999999864
No 29
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.65 E-value=9.8e-16 Score=145.15 Aligned_cols=112 Identities=19% Similarity=0.257 Sum_probs=99.7
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCc--ccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh
Q 002705 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAER--VKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (890)
Q Consensus 266 e~~LYRSgqpT~eDl~~L~~lGIKTVIDLRse~--~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~ 343 (890)
+..++.|||++++|+..++++|||+|||.|++. +.+|.. +.+.++++..|+.|.||||. ...++.++++.|.+.+
T Consensus 7 ~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~-~~i~~aa~~aGl~y~~iPV~-~~~iT~~dV~~f~~Al- 83 (130)
T COG3453 7 NDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGF-AAIAAAAEAAGLTYTHIPVT-GGGITEADVEAFQRAL- 83 (130)
T ss_pred ccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCCh-HHHHHHHHhcCCceEEeecC-CCCCCHHHHHHHHHHH-
Confidence 347889999999999999999999999999996 223333 46778899999999999999 6678999999999999
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHHhCCCCHHHHHH
Q 002705 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG 381 (890)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGalvaLlr~~lGvs~ddIia 381 (890)
++..+|||.||++|. |+-++|.+.....|++.+++.+
T Consensus 84 ~eaegPVlayCrsGt-Rs~~ly~~~~~~~gm~~de~~a 120 (130)
T COG3453 84 DEAEGPVLAYCRSGT-RSLNLYGLGELDGGMSRDEIEA 120 (130)
T ss_pred HHhCCCEEeeecCCc-hHHHHHHHHHHhcCCCHHHHHH
Confidence 678999999999999 9999999999878999999865
No 30
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=99.58 E-value=4.2e-15 Score=159.92 Aligned_cols=132 Identities=23% Similarity=0.211 Sum_probs=106.7
Q ss_pred CCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC---CCccccc--CCCcccHHHHHHHHHcCCCCCCcceeeeeeEEE
Q 002705 753 HERVDFVACLGGDGVILHASNLFRGAVPPVISFNL---GSLGFLT--SHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLC 827 (890)
Q Consensus 753 ~e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~---G~LGFLt--e~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe 827 (890)
..++|+||++|||||||.|++++.+..+||+|||. |+=|.|+ ...+++...+|.++..|+|. ...|.|+.
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNtDP~~Seg~lcL~~~~~~n~~~al~k~~sgnF~-----wv~r~rir 177 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPTGSEGHLCLPDKYPSNPAGALCKLTSGNFE-----WVLRQRIR 177 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhccCCceeeecCCCCcCcceEeccccCCCCcHHHHHHHHhccHH-----HhhhheeE
Confidence 56799999999999999999999989999999999 5555554 22347899999999999975 45677777
Q ss_pred EEEEeCCe----------------ecC------------------CCccceEeEEEeccCCCCccEEEEEEECCeEeEEE
Q 002705 828 CEIFRNGK----------------AMP------------------GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKV 873 (890)
Q Consensus 828 ~~v~r~G~----------------~v~------------------~~~~~ALNEVVI~Rg~~~~li~ieVyIDg~~lt~~ 873 (890)
.++.-++. ... ...+.|||||.|...-++++..+++.||+....+.
T Consensus 178 ~tv~g~~gip~p~dlh~~q~s~nqr~sa~~i~~~~~s~sea~~~~~LpvlALNEVfIgE~lsarVS~y~i~idd~~~~Kq 257 (395)
T KOG4180|consen 178 GTVVGDDGIPDPIDLHDQQLSDNQRSSAKEIEETLLSHSEAVEIVALPVLALNEVFIGESLSARVSYYEISIDDKDGVKQ 257 (395)
T ss_pred EEEecCCCCCCchhhhhhhhccccccchhhHHHHHHhhhhhccccccchhhhcceeecCcccccceeEEEEecCcccccc
Confidence 77652110 000 01245889999999999999999999999999999
Q ss_pred ecCeEEEcCCCCCcCC
Q 002705 874 RPVNCFLNVKIFFFNY 889 (890)
Q Consensus 874 rgDGVIVSTPtg~~~~ 889 (890)
++.|++|+|.|||+.+
T Consensus 258 Kssgl~vctgTGstsw 273 (395)
T KOG4180|consen 258 KSSGLVVCTGTGSTSW 273 (395)
T ss_pred cCCCeeEecCCCcceE
Confidence 9999999999999753
No 31
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.50 E-value=2.4e-13 Score=130.24 Aligned_cols=116 Identities=10% Similarity=0.149 Sum_probs=86.8
Q ss_pred ccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCC-CCCHHHHHHHHHHHh--
Q 002705 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT-APTMEQVEKFASLVS-- 343 (890)
Q Consensus 267 ~~LYRSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~-~ps~E~v~af~~iL~-- 343 (890)
+.||+|++++..++++|+++||++||||+.+. .. . ...|++|+|+|+.|.. .+..+.+....+++.
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~--~~-~--------~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~ 74 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKLGITHVINVTNEV--PN-L--------NKKGFTYLGVPILDNTETKISPYFPEAVEFIEDA 74 (138)
T ss_pred CCeEECChhHcCCHHHHHHcCCCEEEEccCCC--CC-C--------CCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHH
Confidence 47999999999999999999999999998865 11 1 2468999999999743 333444444444442
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHHh-CCCCHHHHHHHhhhcccccccc
Q 002705 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQY-MARCASQISGQTITSNDVLLKD 393 (890)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGalvaLlr~~-lGvs~ddIiaDYL~sn~~~~~~ 393 (890)
...++||||||.+|++|||+++++|+.. .|++.++|++..-...+....+
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~ 125 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPN 125 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCC
Confidence 2567899999999999999888876544 7999999988654444444444
No 32
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.49 E-value=1.3e-13 Score=144.09 Aligned_cols=125 Identities=22% Similarity=0.264 Sum_probs=105.9
Q ss_pred CCCceeEEecCCCcccccCCCcccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEec
Q 002705 245 FANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPV 324 (890)
Q Consensus 245 i~Nw~~V~ls~~~~~~~~~~~e~~LYRSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV 324 (890)
.-||+.|. ..|||||.|.+..+.+|+.+++|+||.|+++. |+.....+++..+|+++||-+
T Consensus 57 PlnFs~V~--------------~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~-----yp~~nl~f~~~~~Ik~~~i~i 117 (249)
T KOG1572|consen 57 PLNFSMVD--------------NGLYRSGFPRPENFSFLKTLHLKSIISLCPEP-----YPEENLNFLESNGIKLYQIGI 117 (249)
T ss_pred Cccccccc--------------cceeecCCCCccchHHHHHhhhheEEEecCCC-----CChHHHHHHHhcCceEEEEec
Confidence 55888886 38999999999999999999999999999975 333445589999999999999
Q ss_pred CCCC----CCC----HHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhCCCCHHHHHHHhhhccc
Q 002705 325 EVRT----APT----MEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSND 388 (890)
Q Consensus 325 ~d~~----~ps----~E~v~af~~iL~d~~~~PVLVHCtAGKDRTGalvaLlr~~lGvs~ddIiaDYL~sn~ 388 (890)
.... .|. .+.+...++++.+..++|+|+||+.||+|||++++|+|++++|+..-|+++|+.-.-
T Consensus 118 e~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~fa~ 189 (249)
T KOG1572|consen 118 EGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLRFAG 189 (249)
T ss_pred ccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHHhcc
Confidence 8655 332 355666777776899999999999999999999999999999999999999995443
No 33
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=99.46 E-value=6.5e-14 Score=149.08 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=117.7
Q ss_pred ccEEEcCCCCHhhHH--HHHHcCCcEEEEcCCCc-ccCcchhhhhHh-hhhcCCcEEEEEecCCCCCCCHHHHHHHHHHH
Q 002705 267 VTFCRGGQVTEEGLK--WLMEKGYKTIVDIRAER-VKDNFYEAAIDD-AILSGKVELIKIPVEVRTAPTMEQVEKFASLV 342 (890)
Q Consensus 267 ~~LYRSgqpT~eDl~--~L~~lGIKTVIDLRse~-~ee~~~~a~e~~-~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL 342 (890)
...|||++|.+.+.. ++..++++++|+|+.+. .....+. .+.. .....++.....+.........+.+..++.++
T Consensus 53 ~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~ 131 (249)
T COG2365 53 IIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYT-DHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLL 131 (249)
T ss_pred eeEcCCCCcccccCCccccccccccccccccccchhhhhhhh-hhhhhhccccchhhhhhccCccchhhHHHHHHHHHHH
Confidence 578999999877766 77778999999999722 0111121 1111 12345566666666666667788888888888
Q ss_pred hcCCCCcEEEeCccCCChHHHHHHHHHHhCCCCHHHHHHHhhhcccccccchH------------HHHHH----------
Q 002705 343 SNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDST------------RTRKL---------- 400 (890)
Q Consensus 343 ~d~~~~PVLVHCtAGKDRTGalvaLlr~~lGvs~ddIiaDYL~sn~~~~~~~~------------~~~k~---------- 400 (890)
.+..++|||+||++||||||++++|++.++|++.+++++||+.+|.+...... ..++.
T Consensus 132 ~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (249)
T COG2365 132 ADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYVSEKLLDDLEKKLQTFSLTLAS 211 (249)
T ss_pred hhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHHHHHHHhhccccchhcccchhHHHHHh
Confidence 66667999999999999999999999999999999999999999998765443 11110
Q ss_pred --HhhhhhhhhhhccchHHHhHHhhhccccccccc
Q 002705 401 --KASAGKFLLEEKYETVKENQDEIQTKNGVFGFG 433 (890)
Q Consensus 401 --~~~~~~~~l~s~~g~~e~~l~~~~~~~~~~~~~ 433 (890)
+-.+...-+...+|+++.++.+..+++....+.
T Consensus 212 ~~y~~~a~~~~~~~~gs~~~~l~~~~~~~~~~~~~ 246 (249)
T COG2365 212 DEYLFAAFDELDEQYGSLDGYLADKFGLSADEWEP 246 (249)
T ss_pred HHHHHHHHHHHHHHHccccccchhhcCcCHHHHHh
Confidence 122333456677777777777776666654443
No 34
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.43 E-value=1.3e-12 Score=124.35 Aligned_cols=118 Identities=8% Similarity=0.175 Sum_probs=87.8
Q ss_pred ccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCC-HHHHHHHHHHHh--
Q 002705 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVS-- 343 (890)
Q Consensus 267 ~~LYRSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps-~E~v~af~~iL~-- 343 (890)
+.||+|++++..+.+.|+++||++||||+++. +. ......|++|+|+|+.+...+. ...+..+.+++.
T Consensus 7 ~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~-~~--------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 77 (139)
T cd00127 7 PGLYLGSYPAASDKELLKKLGITHVLNVAKEV-PN--------ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDA 77 (139)
T ss_pred CCeEECChhHhcCHHHHHHcCCCEEEEcccCC-CC--------cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999976 21 1234579999999999776443 334444444443
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHH-HhCCCCHHHHHHHhhhcccccccc
Q 002705 344 NSSKKPLYLHSKEGVWRTYAMVSRWR-QYMARCASQISGQTITSNDVLLKD 393 (890)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGalvaLlr-~~lGvs~ddIiaDYL~sn~~~~~~ 393 (890)
...++||||||.+|.+|||++++.++ ...|++.++|++..-.-.+....+
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~ 128 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPN 128 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCC
Confidence 13568999999999999997766654 447899999988655444433333
No 35
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.28 E-value=2.1e-11 Score=128.80 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=87.6
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeC
Q 002705 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHS 354 (890)
Q Consensus 277 ~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d--~~~~PVLVHC 354 (890)
+..++.|++.||++||.+.... |+ .+.++..||+++|+|+.|...|+.+++.+|+++++. ..+++|+|||
T Consensus 106 ~~yl~eLk~~gV~~lVrlcE~~-----Yd---~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC 177 (241)
T PTZ00393 106 PLYIKEMKNYNVTDLVRTCERT-----YN---DGEITSAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHC 177 (241)
T ss_pred HHHHHHHHHcCCCEEEECCCCC-----CC---HHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 5778999999999999997643 22 134577899999999999999999999999988752 3577999999
Q ss_pred ccCCChHHHHHHHHHHhCCCCHHHHHHHhhhcccc
Q 002705 355 KEGVWRTYAMVSRWRQYMARCASQISGQTITSNDV 389 (890)
Q Consensus 355 tAGKDRTGalvaLlr~~lGvs~ddIiaDYL~sn~~ 389 (890)
.+|.+|||+++++|+...|++.++|++..-...+.
T Consensus 178 ~AGlGRTGtl~AayLI~~GmspeeAI~~VR~~RPg 212 (241)
T PTZ00393 178 VAGLGRAPVLASIVLIEFGMDPIDAIVFIRDRRKG 212 (241)
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 99999999999999877899999998865544443
No 36
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.27 E-value=4.2e-11 Score=120.61 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=87.6
Q ss_pred cEEEcCCCCH----hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh
Q 002705 268 TFCRGGQVTE----EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (890)
Q Consensus 268 ~LYRSgqpT~----eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~ 343 (890)
+|.-...|++ ++++.|+++||++||++..+. ++ .+.++..|+.|.++|+.+...|+.+.+.+|++++.
T Consensus 17 r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~-----~~---~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~ 88 (166)
T PTZ00242 17 KFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPT-----YD---AELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLD 88 (166)
T ss_pred EEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCC-----CC---HHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHH
Confidence 4555555554 677999999999999996543 21 12456789999999999888999988888887764
Q ss_pred c------CCCCcEEEeCccCCChHHHHHHHHHHhCC-CCHHHHHHHhhhccc
Q 002705 344 N------SSKKPLYLHSKEGVWRTYAMVSRWRQYMA-RCASQISGQTITSND 388 (890)
Q Consensus 344 d------~~~~PVLVHCtAGKDRTGalvaLlr~~lG-vs~ddIiaDYL~sn~ 388 (890)
. ..++||+|||.+|.+|||+++++++...| ++.++|++..-...+
T Consensus 89 ~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~ 140 (166)
T PTZ00242 89 QEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRK 140 (166)
T ss_pred HHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 2 34789999999999999999888876544 999999886554443
No 37
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.21 E-value=2.8e-11 Score=114.99 Aligned_cols=116 Identities=14% Similarity=0.259 Sum_probs=86.4
Q ss_pred EEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCC-CCCCCHHHHHHHHHHHhc--C
Q 002705 269 FCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV-RTAPTMEQVEKFASLVSN--S 345 (890)
Q Consensus 269 LYRSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d-~~~ps~E~v~af~~iL~d--~ 345 (890)
||.|+.+... .++|+++||++|||++.+. +.+ ......+++|+++|+.| ...+..+.+..+.+++.. .
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~-~~~-------~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~ 71 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEEC-PNP-------YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAIS 71 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSS-STS-------HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHH
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCC-cCc-------hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhc
Confidence 6888888888 9999999999999999875 111 12356789999999987 334444555555555542 4
Q ss_pred CCCcEEEeCccCCChHHHHHHHHHHh-CCCCHHHHHHHhhhcccccccc
Q 002705 346 SKKPLYLHSKEGVWRTYAMVSRWRQY-MARCASQISGQTITSNDVLLKD 393 (890)
Q Consensus 346 ~~~PVLVHCtAGKDRTGalvaLlr~~-lGvs~ddIiaDYL~sn~~~~~~ 393 (890)
.+++|||||.+|.+|||++++.|+.. .|++.++|++..-...+....+
T Consensus 72 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~ 120 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPN 120 (133)
T ss_dssp TTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHH
T ss_pred ccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCC
Confidence 57899999999999999888887655 7899999988554444444443
No 38
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.20 E-value=3.1e-11 Score=121.36 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=63.9
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchh-hhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEe
Q 002705 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYE-AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLH 353 (890)
Q Consensus 277 ~eDl~~L~~lGIKTVIDLRse~~ee~~~~-a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d--~~~~PVLVH 353 (890)
+.|+++|+.+|+..||.|.+.. |-..+. ....+.++..||.|+|+||.|...|+.+...++.+.+.. ..++.|++|
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~-EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vH 139 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDH-ELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVH 139 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HH-HHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHCCCCEEEEeCcHH-HHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 6789999999999999999885 211111 134567888999999999999999987655444433321 356789999
Q ss_pred CccCCChHHHHHHHHHHhCC--CCHHHHH
Q 002705 354 SKEGVWRTYAMVSRWRQYMA--RCASQIS 380 (890)
Q Consensus 354 CtAGKDRTGalvaLlr~~lG--vs~ddIi 380 (890)
|.+|.+|||+++|+++..+| ++.++||
T Consensus 140 C~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 140 CRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 99999999999999987766 7777775
No 39
>PRK12361 hypothetical protein; Provisional
Probab=99.18 E-value=2.6e-10 Score=133.60 Aligned_cols=121 Identities=14% Similarity=0.209 Sum_probs=96.5
Q ss_pred ccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--
Q 002705 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-- 344 (890)
Q Consensus 267 ~~LYRSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d-- 344 (890)
+.||.|+++++.|++.|++.||++||||+.+. +.... .....+++|+|+|+.|...|+.+++.+..+.++.
T Consensus 100 ~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~-~~~~~------~~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~ 172 (547)
T PRK12361 100 ENLYLGCRLFPADLEKLKSNKITAILDVTAEF-DGLDW------SLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQV 172 (547)
T ss_pred CcEEECCCCCcccHHHHHHcCCCEEEEccccc-ccccc------cccccCceEEEeecCCCCCCcHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999653 11111 1223689999999999888998888887777753
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHh--CCCCHHHHHHHhhhcccccccch
Q 002705 345 SSKKPLYLHSKEGVWRTYAMVSRWRQY--MARCASQISGQTITSNDVLLKDS 394 (890)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGalvaLlr~~--lGvs~ddIiaDYL~sn~~~~~~~ 394 (890)
..+++|||||.+|.+|++++++.|+.. .+++.++|++.--...+....|.
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~ 224 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNK 224 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCH
Confidence 356899999999999999988888765 36999999887666666555553
No 40
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=98.75 E-value=2.9e-08 Score=102.87 Aligned_cols=94 Identities=17% Similarity=0.319 Sum_probs=78.0
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcC-CCCcEEEeCccCC
Q 002705 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNS-SKKPLYLHSKEGV 358 (890)
Q Consensus 280 l~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~-~~~PVLVHCtAGK 358 (890)
+..++...+++|+-|...- |+ .+.....||..+++|+.|...|+++.+.+|+++++.. ..+.|.|||++|-
T Consensus 87 ~~~~~~~~v~s~vrln~~~-----yd---~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGl 158 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRL-----YD---AKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGL 158 (225)
T ss_pred HHHhhhcccceEEEcCCCC-----CC---hHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCC
Confidence 4556677999999996543 32 2346778999999999999999999999999998532 2589999999999
Q ss_pred ChHHHHHHHHHHh-CCCCHHHHHH
Q 002705 359 WRTYAMVSRWRQY-MARCASQISG 381 (890)
Q Consensus 359 DRTGalvaLlr~~-lGvs~ddIia 381 (890)
+|||+++|+|+.+ .|++..|+|+
T Consensus 159 GRTG~liAc~lmy~~g~ta~eaI~ 182 (225)
T KOG1720|consen 159 GRTGTLIACYLMYEYGMTAGEAIA 182 (225)
T ss_pred CchhHHHHHHHHHHhCCCHHHHHH
Confidence 9999999998766 7899999876
No 41
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=98.55 E-value=1.6e-07 Score=101.34 Aligned_cols=109 Identities=26% Similarity=0.244 Sum_probs=78.6
Q ss_pred cEEEEEecC--Ch-hHHHHHHHHHHHHhcCCCeEEEEcCchhh-hhhcCCCCccceeeeccCccccCCCccEEEEEcCch
Q 002705 691 RTVLVLKKP--GP-ALMEEAKEVASFLYHQEKMNILVEPDVHD-IFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (890)
Q Consensus 691 kkVlIV~K~--~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~-~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDG 766 (890)
++++|+.++ +. ...+.+.++.++|.+ +++++.+...... .... .........+|+||++||||
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~~~~~~~------------~~~~~~~~~~d~ivv~GGDG 68 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWEKGDAAR------------YVEEARKFGVDTVIAGGGDG 68 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecCcccHHH------------HHHHHHhcCCCEEEEECCCC
Confidence 588999999 44 356678889998876 5777654322111 0000 00012234689999999999
Q ss_pred HHHHHHHhcCC-CCCcEEE-EeCCCcccccC-CC-cccHHHHHHHHHcCC
Q 002705 767 VILHASNLFRG-AVPPVIS-FNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (890)
Q Consensus 767 TlL~Aar~~~~-~~~PILG-IN~G~LGFLte-~~-~ed~~~~L~~Il~G~ 812 (890)
|+..+++.+.. ...|.+| |+.|+.++|+. +. ++++.++++.+.+|+
T Consensus 69 Tl~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~~ 118 (293)
T TIGR00147 69 TINEVVNALIQLDDIPALGILPLGTANDFARSLGIPEDLDKAAKLVIAGD 118 (293)
T ss_pred hHHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcCC
Confidence 99999998765 4566788 99999999998 66 678999999999887
No 42
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.30 E-value=1.2e-06 Score=86.87 Aligned_cols=61 Identities=20% Similarity=0.357 Sum_probs=45.6
Q ss_pred hHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcC-CCCcEEEeCccCCChHHHHHHHH
Q 002705 308 IDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNS-SKKPLYLHSKEGVWRTYAMVSRW 368 (890)
Q Consensus 308 e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~-~~~PVLVHCtAGKDRTGalvaLl 368 (890)
+...++..|+.|++||+.+...|.++.+++|++++... .+..++|||.+|++||.+..+++
T Consensus 84 e~~~~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~ 145 (149)
T PF14566_consen 84 EEELVEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMY 145 (149)
T ss_dssp HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 35677889999999999999999999999999999753 34679999999999999555554
No 43
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.28 E-value=4.5e-06 Score=81.64 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=85.3
Q ss_pred cEEEcCCCCHhh----HHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh
Q 002705 268 TFCRGGQVTEEG----LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (890)
Q Consensus 268 ~LYRSgqpT~eD----l~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~ 343 (890)
+|.....|+..- ++.|++.|++||+-..... |. ...++..||..+..|..+...|..+.++.+++++.
T Consensus 18 rFLIThnPtnaTln~fieELkKygvttvVRVCe~T-----Yd---t~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~ 89 (173)
T KOG2836|consen 18 RFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPT-----YD---TTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVK 89 (173)
T ss_pred EEEEecCCCchhHHHHHHHHHhcCCeEEEEecccc-----cC---CchhhhcCceEeecccccCCCCchHHHHHHHHHHH
Confidence 455555665544 5778899999999998875 21 12367899999999999888888888888888753
Q ss_pred ----cCCCCcEEEeCccCCChHHHHHHHHHHhCCCCHHHHHH
Q 002705 344 ----NSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG 381 (890)
Q Consensus 344 ----d~~~~PVLVHCtAGKDRTGalvaLlr~~lGvs~ddIia 381 (890)
+..+.-|.|||-||-+|+.+++|+.+.-.|+..++|++
T Consensus 90 ~~f~e~p~~cvavhcvaglgrapvlvalalie~gmkyedave 131 (173)
T KOG2836|consen 90 TKFREEPGCCVAVHCVAGLGRAPVLVALALIEAGMKYEDAVE 131 (173)
T ss_pred HHHhhCCCCeEEEEeecccCcchHHHHHHHHHccccHHHHHH
Confidence 34556699999999999999999999889999999975
No 44
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.18 E-value=7.8e-06 Score=81.74 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=77.6
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCC-CCCCHHHHHHHHHHHh--cCCCCcEEEeC
Q 002705 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR-TAPTMEQVEKFASLVS--NSSKKPLYLHS 354 (890)
Q Consensus 278 eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~-~~ps~E~v~af~~iL~--d~~~~PVLVHC 354 (890)
.+.+.++++|+.-|+.+..+. |- ..+ ...-+..||+.+.||..|. ..|+.+.+.+..+.+. ...++-++|||
T Consensus 42 ~~~~~i~ke~v~gvv~~ne~y-E~-~a~---s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHC 116 (183)
T KOG1719|consen 42 MDVPLIKKENVGGVVTLNEPY-EL-LAP---SNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHC 116 (183)
T ss_pred ccchHHHhcCCCeEEEeCCch-hh-hhh---hHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEe
Confidence 567888999999999998774 21 111 1245778999999999875 4678888887777664 35578899999
Q ss_pred ccCCChHHHHHHHHHHh-CCCCHHHHHH
Q 002705 355 KEGVWRTYAMVSRWRQY-MARCASQISG 381 (890)
Q Consensus 355 tAGKDRTGalvaLlr~~-lGvs~ddIia 381 (890)
+||..|+.++++||+.. -+|+.++|.+
T Consensus 117 KAGRtRSaTvV~cYLmq~~~wtpe~A~~ 144 (183)
T KOG1719|consen 117 KAGRTRSATVVACYLMQHKNWTPEAAVE 144 (183)
T ss_pred cCCCccchhhhhhhhhhhcCCCHHHHHH
Confidence 99999999999998643 7799999976
No 45
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.16 E-value=5e-06 Score=84.82 Aligned_cols=76 Identities=14% Similarity=0.290 Sum_probs=57.4
Q ss_pred hhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeCccCCChHHHHHHHHHHh-CC-CCHHHHHHHhhhcc
Q 002705 312 ILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHSKEGVWRTYAMVSRWRQY-MA-RCASQISGQTITSN 387 (890)
Q Consensus 312 ~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d--~~~~PVLVHCtAGKDRTGalvaLlr~~-lG-vs~ddIiaDYL~sn 387 (890)
.+..|+.++++|+.|...|+.+++.++.+++.+ ..++.|+|||.+|.+|||++++.|+.+ .| ...++++.-+....
T Consensus 68 ~~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 68 EENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred eccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 456799999999999999999998888887753 345689999999999999777755433 34 55666655444333
No 46
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.92 E-value=9.2e-05 Score=80.80 Aligned_cols=119 Identities=12% Similarity=0.198 Sum_probs=85.9
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCH----HHHHHHHHH
Q 002705 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTM----EQVEKFASL 341 (890)
Q Consensus 266 e~~LYRSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~----E~v~af~~i 341 (890)
.+.+|-+.+..+.+...|+++||+.|+|+.... ..+. .....+++|.++|+.|....+. +....|++.
T Consensus 79 ~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~-~~~~-------~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~ 150 (285)
T KOG1716|consen 79 LPNLYLGSQGVASDPDLLKKLGITHVLNVSSSC-PNPR-------FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEK 150 (285)
T ss_pred cCCceecCcccccchhhHHHcCCCEEEEecccC-Cccc-------cccccCceEEeccccCCccccHHHHHHHHHHHHHH
Confidence 457888888899999999999999999998764 1110 1223489999999997544432 233445555
Q ss_pred HhcCCCCcEEEeCccCCChHHHH-HHHHHHhCCCCHHHHHHHhhhcccccccc
Q 002705 342 VSNSSKKPLYLHSKEGVWRTYAM-VSRWRQYMARCASQISGQTITSNDVLLKD 393 (890)
Q Consensus 342 L~d~~~~PVLVHCtAGKDRTGal-vaLlr~~lGvs~ddIiaDYL~sn~~~~~~ 393 (890)
.. ..++.|||||.+|..|+-++ +|.+....|++.++|++-+-..-+....|
T Consensus 151 a~-~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN 202 (285)
T KOG1716|consen 151 AR-EKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPN 202 (285)
T ss_pred HH-hCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCC
Confidence 42 45788999999999999954 45555668999999987666555555444
No 47
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.83 E-value=0.00011 Score=74.68 Aligned_cols=103 Identities=13% Similarity=0.196 Sum_probs=72.8
Q ss_pred ccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCC-HHHHHHHHHHHh--
Q 002705 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVS-- 343 (890)
Q Consensus 267 ~~LYRSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps-~E~v~af~~iL~-- 343 (890)
+.||-|......+...|++.||+.|||-..+. ... -..+++|+.+|+.|..... .+.++...+.+.
T Consensus 22 ~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~----------~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v 90 (198)
T KOG1718|consen 22 PSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNT----------SLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSV 90 (198)
T ss_pred cceeEeccccccCHHHHHhcCceEEEEcccCC-CCc----------cCCCceeEEEEcccCCcchhhhhhhHHHHHHHHH
Confidence 47888866667778889999999999998864 111 2358999999999643322 122222222222
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHH-HHhCCCCHHHHH
Q 002705 344 NSSKKPLYLHSKEGVWRTYAMVSRW-RQYMARCASQIS 380 (890)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGalvaLl-r~~lGvs~ddIi 380 (890)
....+..|+||.||..|+..++..+ +++.+++..||.
T Consensus 91 ~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy 128 (198)
T KOG1718|consen 91 IMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAY 128 (198)
T ss_pred HhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHH
Confidence 2457889999999999999776554 567888888883
No 48
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.80 E-value=3.3e-05 Score=69.30 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=37.4
Q ss_pred EEEEecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCccCCChHHHHHHHHHHh
Q 002705 319 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQY 371 (890)
Q Consensus 319 yVhIPV~d~~~ps~-E~v~af~~iL~d~-----~~~PVLVHCtAGKDRTGalvaLlr~~ 371 (890)
|.+.+..+...|.. +.+..|++.+... .++||+|||.+|++|||++++++..+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~ 63 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILL 63 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHH
Confidence 44455555555644 6777777766421 26799999999999999888877653
No 49
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.80 E-value=3.3e-05 Score=69.30 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=37.4
Q ss_pred EEEEecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCccCCChHHHHHHHHHHh
Q 002705 319 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQY 371 (890)
Q Consensus 319 yVhIPV~d~~~ps~-E~v~af~~iL~d~-----~~~PVLVHCtAGKDRTGalvaLlr~~ 371 (890)
|.+.+..+...|.. +.+..|++.+... .++||+|||.+|++|||++++++..+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~ 63 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILL 63 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHH
Confidence 44455555555644 6777777766421 26799999999999999888877653
No 50
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.77 E-value=0.00011 Score=79.17 Aligned_cols=107 Identities=14% Similarity=0.206 Sum_probs=75.3
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHH-HHHHHHHHHhc
Q 002705 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTME-QVEKFASLVSN 344 (890)
Q Consensus 266 e~~LYRSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E-~v~af~~iL~d 344 (890)
-+.||-|+.-+...++-|+++||++|||..+.- ...+ -+...+.|..||+.|...-... .+.+.+.+|.+
T Consensus 176 lp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl--pn~f-------e~~g~f~YkqipisDh~Sqnls~ffpEAIsfIde 246 (343)
T KOG1717|consen 176 LPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL--PNNF-------ENNGEFIYKQIPISDHASQNLSQFFPEAISFIDE 246 (343)
T ss_pred ccchhcccccccccHHHHHhcCceEEEecCCCC--cchh-------hcCCceeEEeeeccchhhhhhhhhhHHHHHHHHH
Confidence 457889998888999999999999999997763 2222 2345689999999964322211 12233344432
Q ss_pred --CCCCcEEEeCccCCChHHHHHHHH-HHhCCCCHHHHHH
Q 002705 345 --SSKKPLYLHSKEGVWRTYAMVSRW-RQYMARCASQISG 381 (890)
Q Consensus 345 --~~~~PVLVHCtAGKDRTGalvaLl-r~~lGvs~ddIia 381 (890)
..+-.|||||-+|..|+-++.+.| ++.+..+..+|.+
T Consensus 247 Arsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd 286 (343)
T KOG1717|consen 247 ARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYD 286 (343)
T ss_pred hhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHH
Confidence 345679999999999999655544 4557788888865
No 51
>PRK13057 putative lipid kinase; Reviewed
Probab=97.13 E-value=0.001 Score=72.25 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=71.0
Q ss_pred EEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCch-hhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHHHH
Q 002705 695 VLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDV-HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHAS 772 (890)
Q Consensus 695 IV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~v-a~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~Aa 772 (890)
||.+|.. .....+.++.++|.+ .|+++.+.... ...... . ..+.....|.||++|||||+=.++
T Consensus 2 ~I~Np~sg~~~~~~~~i~~~l~~-~g~~~~~~~t~~~~~a~~---------~----~~~~~~~~d~iiv~GGDGTv~~v~ 67 (287)
T PRK13057 2 LLVNRHARSGRAALAAARAALEA-AGLELVEPPAEDPDDLSE---------V----IEAYADGVDLVIVGGGDGTLNAAA 67 (287)
T ss_pred EEECCCCCCcchhHHHHHHHHHH-cCCeEEEEecCCHHHHHH---------H----HHHHHcCCCEEEEECchHHHHHHH
Confidence 4555543 222456788888876 57775543221 100000 0 011235679999999999999999
Q ss_pred HhcCCCCCcEEEEeCCCcccccCC-C-cccHHHHHHHHHcCC
Q 002705 773 NLFRGAVPPVISFNLGSLGFLTSH-P-FEDYRQDLRQVIYGN 812 (890)
Q Consensus 773 r~~~~~~~PILGIN~G~LGFLte~-~-~ed~~~~L~~Il~G~ 812 (890)
+.+...++|+.-|-.|+-.-++.. . +.++.++++.+..|.
T Consensus 68 ~~l~~~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~ 109 (287)
T PRK13057 68 PALVETGLPLGILPLGTANDLARTLGIPLDLEAAARVIATGQ 109 (287)
T ss_pred HHHhcCCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHcCC
Confidence 988888899888999988877753 2 467999999999886
No 52
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=96.87 E-value=0.0032 Score=65.80 Aligned_cols=53 Identities=17% Similarity=0.073 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcC----CCCcEEEeCccCCChHHHHHHHHHHh------CCCCHHHHHHHhh
Q 002705 332 MEQVEKFASLVSNS----SKKPLYLHSKEGVWRTYAMVSRWRQY------MARCASQISGQTI 384 (890)
Q Consensus 332 ~E~v~af~~iL~d~----~~~PVLVHCtAGKDRTGalvaLlr~~------lGvs~ddIiaDYL 384 (890)
.+++.+|++.+... ..+|++|||.+|.+|||+++++...+ ..++..+++...-
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR 209 (231)
T cd00047 147 PDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELR 209 (231)
T ss_pred hHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 36677777766533 36899999999999999888876432 2366666655433
No 53
>PRK00861 putative lipid kinase; Reviewed
Probab=96.76 E-value=0.0057 Score=66.81 Aligned_cols=109 Identities=14% Similarity=0.242 Sum_probs=70.5
Q ss_pred CcEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEcCch--hhhhhcCCCCccceeeeccCccccCCCccEEEEEcC
Q 002705 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (890)
Q Consensus 690 pkkVlIV~K~~~---ea~e~a~eL~~~L~~~~gieV~vE~~v--a~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGG 764 (890)
.++++||.+|.. .....+.++...|.+...++++....- +..+. .....+..|+||++||
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a---------------~~~~~~~~d~vv~~GG 66 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQLA---------------QEAIERGAELIIASGG 66 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHHH---------------HHHHhcCCCEEEEECC
Confidence 358899999874 234456777777765323444432221 11110 0111356799999999
Q ss_pred chHHHHHHHhcCCCCCcEEEEeCCCccccc-CCC-cccHHHHHHHHHcCCC
Q 002705 765 DGVILHASNLFRGAVPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGNN 813 (890)
Q Consensus 765 DGTlL~Aar~~~~~~~PILGIN~G~LGFLt-e~~-~ed~~~~L~~Il~G~y 813 (890)
|||+=.++..+....+|+-=|-.|+-.=++ .+. +.++.++++.+.+|..
T Consensus 67 DGTl~evv~~l~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~ 117 (300)
T PRK00861 67 DGTLSAVAGALIGTDIPLGIIPRGTANAFAAALGIPDTIEEACRTILQGKT 117 (300)
T ss_pred hHHHHHHHHHHhcCCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCCc
Confidence 999999999988777776667777654443 233 3478899999998873
No 54
>PRK11914 diacylglycerol kinase; Reviewed
Probab=96.73 E-value=0.0088 Score=65.52 Aligned_cols=111 Identities=23% Similarity=0.258 Sum_probs=74.3
Q ss_pred CCcEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE--cCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEc
Q 002705 689 TPRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV--EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLG 763 (890)
Q Consensus 689 ~pkkVlIV~K~~~---ea~e~a~eL~~~L~~~~gieV~v--E~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLG 763 (890)
.+++++||.+|.. ...+.+.++.+.|++ .++++.+ .+...+ ... + ......+.+|+||++|
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~~~~~-~~~---------~---a~~~~~~~~d~vvv~G 72 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGTDAHD-ARH---------L---VAAALAKGTDALVVVG 72 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeCCHHH-HHH---------H---HHHHHhcCCCEEEEEC
Confidence 3578999999874 356677888888876 4766432 222111 000 0 0011234579999999
Q ss_pred CchHHHHHHHhcCCCCCcEEEEeCCCccccc-CCC--cccHHHHHHHHHcCCC
Q 002705 764 GDGVILHASNLFRGAVPPVISFNLGSLGFLT-SHP--FEDYRQDLRQVIYGNN 813 (890)
Q Consensus 764 GDGTlL~Aar~~~~~~~PILGIN~G~LGFLt-e~~--~ed~~~~L~~Il~G~y 813 (890)
||||+=.++..+...++|+-=|-.|+-.=++ .+. .++.+++++.+..|..
T Consensus 73 GDGTi~evv~~l~~~~~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~~g~~ 125 (306)
T PRK11914 73 GDGVISNALQVLAGTDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVDGWT 125 (306)
T ss_pred CchHHHHHhHHhccCCCcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHHcCCc
Confidence 9999999998888778887767778765555 233 2468899999998873
No 55
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=96.70 E-value=0.0064 Score=64.76 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHhcC---CCCcEEEeCccCCChHHHHHHHHHHh------CCCCHHHHHHHh
Q 002705 331 TMEQVEKFASLVSNS---SKKPLYLHSKEGVWRTYAMVSRWRQY------MARCASQISGQT 383 (890)
Q Consensus 331 s~E~v~af~~iL~d~---~~~PVLVHCtAGKDRTGalvaLlr~~------lGvs~ddIiaDY 383 (890)
+.+.+.+|++.+... ..+||+|||.+|.+|||+++++...+ ..++..+++...
T Consensus 174 ~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~l 235 (258)
T smart00194 174 SPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKEL 235 (258)
T ss_pred CHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456677777766432 26899999999999999888775432 236666666543
No 56
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.26 E-value=0.0032 Score=68.15 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHhcC--CCCcEEEeCccCCChHHHHHHHH
Q 002705 327 RTAPTMEQVEKFASLVSNS--SKKPLYLHSKEGVWRTYAMVSRW 368 (890)
Q Consensus 327 ~~~ps~E~v~af~~iL~d~--~~~PVLVHCtAGKDRTGalvaLl 368 (890)
...|+...+.+++.-+.+. ..+|++|||.||.||||+++++-
T Consensus 196 ~~~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD 239 (302)
T COG5599 196 FNVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALD 239 (302)
T ss_pred cCCcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHH
Confidence 3345455566666666444 56899999999999999777764
No 57
>PRK13054 lipid kinase; Reviewed
Probab=96.25 E-value=0.013 Score=64.21 Aligned_cols=109 Identities=21% Similarity=0.188 Sum_probs=68.3
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCch----hhhhhcCCCCccceeeeccCccccCCCccEEEEEcC
Q 002705 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV----HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (890)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~v----a~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGG 764 (890)
|+++++||.+++......+.++...|.+ .++++.+.... +..+. .....+..|.||++||
T Consensus 2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~-~g~~~~v~~t~~~~~a~~~a---------------~~~~~~~~d~vvv~GG 65 (300)
T PRK13054 2 TFPKSLLILNGKSAGNEELREAVGLLRE-EGHTLHVRVTWEKGDAARYV---------------EEALALGVATVIAGGG 65 (300)
T ss_pred CCceEEEEECCCccchHHHHHHHHHHHH-cCCEEEEEEecCCCcHHHHH---------------HHHHHcCCCEEEEECC
Confidence 4678889888775445566777888876 47665432211 11110 0112345799999999
Q ss_pred chHHHHHHHhcCCC----CCcEEEEeCCCccccc-CCC-cccHHHHHHHHHcCCC
Q 002705 765 DGVILHASNLFRGA----VPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGNN 813 (890)
Q Consensus 765 DGTlL~Aar~~~~~----~~PILGIN~G~LGFLt-e~~-~ed~~~~L~~Il~G~y 813 (890)
|||+=.+++-+.+. .+|+-=|-.|+-.=++ .+. +.++.++++.+..|..
T Consensus 66 DGTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~~ 120 (300)
T PRK13054 66 DGTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPLEPDKALKLAIEGRA 120 (300)
T ss_pred ccHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCCc
Confidence 99999988876532 3565555667544333 222 3468889999988873
No 58
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=96.20 E-value=0.0062 Score=70.54 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=65.1
Q ss_pred HHHHHHc--CCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHH----HHhcCCCCcEEEe
Q 002705 280 LKWLMEK--GYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFAS----LVSNSSKKPLYLH 353 (890)
Q Consensus 280 l~~L~~l--GIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~----iL~d~~~~PVLVH 353 (890)
..+|... |=-.|.||+.+. .|. ....-=+...+|..+..+|+.+.+..|.+ ++......-+.||
T Consensus 44 ~~fL~s~H~~~y~vyNL~~er----~yd------~~~f~g~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvH 113 (434)
T KOG2283|consen 44 VLFLDSKHKDHYKVYNLSSER----LYD------PSRFHGRVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVH 113 (434)
T ss_pred HHHHhhccCCceEEEecCccc----cCC------ccccccceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEE
Confidence 3444433 445699999743 121 01111244558999999999999887765 4544445568999
Q ss_pred CccCCChHHHHHHHHHHhCC--CCHHHHHHHhhhcc
Q 002705 354 SKEGVWRTYAMVSRWRQYMA--RCASQISGQTITSN 387 (890)
Q Consensus 354 CtAGKDRTGalvaLlr~~lG--vs~ddIiaDYL~sn 387 (890)
|++||+|||+|+..++.+.| .+.++|++.|....
T Consensus 114 Ck~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR 149 (434)
T KOG2283|consen 114 CKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKR 149 (434)
T ss_pred ccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhh
Confidence 99999999976666666666 45788888777554
No 59
>PRK13055 putative lipid kinase; Reviewed
Probab=96.05 E-value=0.043 Score=61.34 Aligned_cols=106 Identities=11% Similarity=0.155 Sum_probs=66.8
Q ss_pred cEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE--cC-c--hhhhhhcCCCCccceeeeccCccccCCCccEEEEE
Q 002705 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV--EP-D--VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 762 (890)
Q Consensus 691 kkVlIV~K~~~---ea~e~a~eL~~~L~~~~gieV~v--E~-~--va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvL 762 (890)
++++||.+|.. .....+.++.+.|.+ .++++.+ .. . -+..+. .....+.+|+||++
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~~~~~~a~~~~---------------~~~~~~~~d~vvv~ 66 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTTPEPNSAKNEA---------------KRAAEAGFDLIIAA 66 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEeecCCccHHHHH---------------HHHhhcCCCEEEEE
Confidence 68999999875 245667888888876 4765432 21 1 111110 00112457999999
Q ss_pred cCchHHHHHHHhcCCC--CCcEEEEeCCCccccc-CCC-cc-cHHHHHHHHHcCC
Q 002705 763 GGDGVILHASNLFRGA--VPPVISFNLGSLGFLT-SHP-FE-DYRQDLRQVIYGN 812 (890)
Q Consensus 763 GGDGTlL~Aar~~~~~--~~PILGIN~G~LGFLt-e~~-~e-d~~~~L~~Il~G~ 812 (890)
|||||+=.+++-+... .+|+-=|-.|+-.=++ .+. +. +..++++.+..|.
T Consensus 67 GGDGTl~evvngl~~~~~~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~ 121 (334)
T PRK13055 67 GGDGTINEVVNGIAPLEKRPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQ 121 (334)
T ss_pred CCCCHHHHHHHHHhhcCCCCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCC
Confidence 9999998888877643 4454445667644433 222 23 6888999998887
No 60
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=95.90 E-value=0.014 Score=64.60 Aligned_cols=23 Identities=9% Similarity=0.132 Sum_probs=19.8
Q ss_pred CCCcEEEeCccCCChHHHHHHHH
Q 002705 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (890)
Q Consensus 346 ~~~PVLVHCtAGKDRTGalvaLl 368 (890)
..+|++|||.+|.+|||+++++-
T Consensus 220 ~~~PIVVHCSaGvGRTGtFcaiD 242 (298)
T PHA02740 220 KIAPIIIDCIDGISSSAVFCVFD 242 (298)
T ss_pred CCCCEEEECCCCCchhHHHHHHH
Confidence 35799999999999999877763
No 61
>PLN02727 NAD kinase
Probab=95.89 E-value=0.015 Score=72.09 Aligned_cols=180 Identities=9% Similarity=-0.039 Sum_probs=108.2
Q ss_pred hccccccccccccchhccccCCCcccc-cccccccccchhhccccC--------cccc--------cccc--ccCCcccc
Q 002705 424 QTKNGVFGFGLSVDMDKRNQSNGAYKG-LSSVEGVESAKEVDTAVG--------SLGT--------TFSK--ETDPFKAQ 484 (890)
Q Consensus 424 ~~~~~~~~~~~r~nl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~--------~~~~--~~~~~~~~ 484 (890)
...++.++|+.|.|++..|..++++.+ ++...|++..-...-+-+ -... .|.| +.-|----
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (986)
T PLN02727 409 GESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVGTGVESQSNFNMESDPLKAQVPPCDVFSKKEMSKFFRSKKIYPPTYL 488 (986)
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeecCcccccCCCcccccHHHHHHHHhhcccCCcccc
Confidence 456888999999999999999999987 777666544321110000 0001 1111 11111111
Q ss_pred CCCCcccchHHHhhhhhcc------ccCCCccccccccccccCCccccCCC-CCcccccccccccccCCCCCCCCCCCCC
Q 002705 485 VPPSNFVSKKEMSRFFRSK------TTSPPRYFNYQSKRMDVLPSEIVSSG-PVSGVAETRYSQWSLSGNNLSPNHQNLP 557 (890)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (890)
.+....|++--..+|-+.. -+-|.+-+---+++...+-+++.+.+ +.+++++.++|||++++++++++.|++.
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~sng~~s~kn~s~d~qss~~~~~k~sNGss~~s~~s~s~~Ss~ 568 (986)
T PLN02727 489 NYRRKGFEKLPVPQFTGVTQGSKIDDTDSISRLVETGRSNGLVSEKNSSPKYQSSEFDNGKSSNGSSFASDGSLSVASSI 568 (986)
T ss_pred cchhcccccCCccccccccchhhccCccchhhhhhccCCCccccccccCccccchhhccccCCCCccccccCcccccccc
Confidence 1111222221111000000 00000100000112223335667777 8889999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCccCccccCCCcccccccccccccccccccccccccc
Q 002705 558 AGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVISSSVR 610 (890)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (890)
..+.+++||+++++|++..|.... ++.+ +.++++|.+.++.+++..
T Consensus 569 ~~~~~~~ng~~stsv~~nl~~~v~-----s~s~--res~s~Ng~a~vgssd~~ 614 (986)
T PLN02727 569 TNGNPSNNGASSSTVSDNLERSVA-----SVSV--RESQRSNGKASLGSSDDE 614 (986)
T ss_pred cCCccccCCCccccccCCCccccc-----cccc--ccccccCCccccccccCc
Confidence 999999999999999988887766 3333 344788999888887765
No 62
>PRK13059 putative lipid kinase; Reviewed
Probab=95.85 E-value=0.04 Score=60.41 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=68.7
Q ss_pred cEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE-cCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCch
Q 002705 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (890)
Q Consensus 691 kkVlIV~K~~~---ea~e~a~eL~~~L~~~~gieV~v-E~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDG 766 (890)
+++++|.+|.. ...+.+.++.++|.+ .|+++.+ ......... .......+..|.||++||||
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~-------------~~~~~~~~~~d~vi~~GGDG 67 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISLEYDLK-------------NAFKDIDESYKYILIAGGDG 67 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccCcchHH-------------HHHHHhhcCCCEEEEECCcc
Confidence 57889998874 244667788888876 4776543 111111000 00112235679999999999
Q ss_pred HHHHHHHhcC--CCCCcEEEEeCCCcccccC-CC-cccHHHHHHHHHcCC
Q 002705 767 VILHASNLFR--GAVPPVISFNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (890)
Q Consensus 767 TlL~Aar~~~--~~~~PILGIN~G~LGFLte-~~-~ed~~~~L~~Il~G~ 812 (890)
|+=.+++-+. +..+|+-=|-.|+-.-++- +. +.+..++++.+..|.
T Consensus 68 Tv~evv~gl~~~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~ 117 (295)
T PRK13059 68 TVDNVVNAMKKLNIDLPIGILPVGTANDFAKFLGMPTDIGEACEQILKSK 117 (295)
T ss_pred HHHHHHHHHHhcCCCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCC
Confidence 9988888776 3456755566676544432 22 457889999999887
No 63
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=95.67 E-value=0.016 Score=64.02 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.4
Q ss_pred CCcEEEeCccCCChHHHHHHHH
Q 002705 347 KKPLYLHSKEGVWRTYAMVSRW 368 (890)
Q Consensus 347 ~~PVLVHCtAGKDRTGalvaLl 368 (890)
.+||+|||.+|.+|||+++++-
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid 250 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAID 250 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHH
Confidence 4799999999999999887764
No 64
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=95.50 E-value=0.021 Score=64.11 Aligned_cols=59 Identities=27% Similarity=0.389 Sum_probs=50.9
Q ss_pred CccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCCCccccc--CCCcccHHHHHHHHHcCCCC
Q 002705 755 RVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLT--SHPFEDYRQDLRQVIYGNNT 814 (890)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~G~LGFLt--e~~~ed~~~~L~~Il~G~y~ 814 (890)
.+|+|+..|||||.=-.+.-. +.++|||||..|.--|.. .++|+.....+..+++|+++
T Consensus 100 gVdlIvfaGGDGTarDVa~av-~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~~~~lkg~~r 160 (355)
T COG3199 100 GVDLIVFAGGDGTARDVAEAV-GADVPVLGIPAGVKNYSGVFALSPEDAARLLGAFLKGNAR 160 (355)
T ss_pred CceEEEEeCCCccHHHHHhhc-cCCCceEeeccccceeccccccChHHHHHHHHHHhccccc
Confidence 699999999999976666655 678999999999877774 67899999999999999654
No 65
>PRK12361 hypothetical protein; Provisional
Probab=95.46 E-value=0.055 Score=64.29 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=70.3
Q ss_pred CcEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEcCch--hhhhhcCCCCccceeeeccCccccCCCccEEEEEcC
Q 002705 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (890)
Q Consensus 690 pkkVlIV~K~~~---ea~e~a~eL~~~L~~~~gieV~vE~~v--a~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGG 764 (890)
.++++||.+|.. ...+.+.++.+.|.+...++++..+.- +..+. .....+..|.||++||
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~la---------------~~~~~~~~d~Viv~GG 306 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEALA---------------KQARKAGADIVIACGG 306 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHHHH---------------HHHHhcCCCEEEEECC
Confidence 567889998874 355677888888876322333322110 11110 0111345799999999
Q ss_pred chHHHHHHHhcCCCCCcEEEEeCCCcccccC-C---C--cccHHHHHHHHHcCCC
Q 002705 765 DGVILHASNLFRGAVPPVISFNLGSLGFLTS-H---P--FEDYRQDLRQVIYGNN 813 (890)
Q Consensus 765 DGTlL~Aar~~~~~~~PILGIN~G~LGFLte-~---~--~ed~~~~L~~Il~G~y 813 (890)
|||+=.++..+.+.++|+-=|-.|+-.=++- + . ..+.+++++.+.+|..
T Consensus 307 DGTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~~ 361 (547)
T PRK12361 307 DGTVTEVASELVNTDITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGHT 361 (547)
T ss_pred CcHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCCC
Confidence 9999999998887777766567776654442 1 1 1478889999988873
No 66
>PRK13337 putative lipid kinase; Reviewed
Probab=95.45 E-value=0.077 Score=58.30 Aligned_cols=106 Identities=15% Similarity=0.206 Sum_probs=66.3
Q ss_pred cEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE--cCch--hhhhhcCCCCccceeeeccCccccCCCccEEEEEc
Q 002705 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV--EPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLG 763 (890)
Q Consensus 691 kkVlIV~K~~~---ea~e~a~eL~~~L~~~~gieV~v--E~~v--a~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLG 763 (890)
++++||.+|.. .....+.++.+.|.+ .++++.+ .+.. +..+. .....+..|+||++|
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~~~~a~~~a---------------~~~~~~~~d~vvv~G 65 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTGPGDATLAA---------------ERAVERKFDLVIAAG 65 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecCCCCHHHHH---------------HHHHhcCCCEEEEEc
Confidence 57899998874 234567788888876 4766432 2111 00110 001124579999999
Q ss_pred CchHHHHHHHhcCCC--CCcEEEEeCCCcccccC-CC-cccHHHHHHHHHcCC
Q 002705 764 GDGVILHASNLFRGA--VPPVISFNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (890)
Q Consensus 764 GDGTlL~Aar~~~~~--~~PILGIN~G~LGFLte-~~-~ed~~~~L~~Il~G~ 812 (890)
||||+=.++.-+... .+|+-=|-.|+-.-++- +. +.+++++++.+..|.
T Consensus 66 GDGTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~ 118 (304)
T PRK13337 66 GDGTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHVPRDIEKAADVIIEGH 118 (304)
T ss_pred CCCHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCC
Confidence 999998888866533 45555556676554442 22 356888999988887
No 67
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=95.42 E-value=0.076 Score=62.50 Aligned_cols=65 Identities=26% Similarity=0.308 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHhcC-----------C-CCcEEEeCccCCChHHHHHHHHHHh-CC-CCHHHHHHHhhhcccc-cccchH
Q 002705 331 TMEQVEKFASLVSNS-----------S-KKPLYLHSKEGVWRTYAMVSRWRQY-MA-RCASQISGQTITSNDV-LLKDST 395 (890)
Q Consensus 331 s~E~v~af~~iL~d~-----------~-~~PVLVHCtAGKDRTGalvaLlr~~-lG-vs~ddIiaDYL~sn~~-~~~~~~ 395 (890)
+.+.+..|++.+... . ..| +|||+||.+|||++++++... .+ ++.++++.+.=.+..+ +-...+
T Consensus 439 ST~~LleLvr~Vr~~~q~~~~~~~~~nk~~P-VVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng~MVQt~e 517 (535)
T PRK15375 439 STDQLEYLADRVKNSNQNGAPGRSSSDKHLP-MIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNNRMLEDAS 517 (535)
T ss_pred ChHHHHHHHHHHHHhhhcccccccccCCCCc-eEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCccccccHH
Confidence 445677776665321 1 235 799999999999888887542 12 6788887766555444 444444
Q ss_pred H
Q 002705 396 R 396 (890)
Q Consensus 396 ~ 396 (890)
+
T Consensus 518 Q 518 (535)
T PRK15375 518 Q 518 (535)
T ss_pred H
Confidence 3
No 68
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=95.29 E-value=0.019 Score=63.77 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.1
Q ss_pred CcEEEeCccCCChHHHHHHHH
Q 002705 348 KPLYLHSKEGVWRTYAMVSRW 368 (890)
Q Consensus 348 ~PVLVHCtAGKDRTGalvaLl 368 (890)
+|++|||.+|.+|||+++++-
T Consensus 230 ~PIvVHCsaGvGRtGtfcaid 250 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVD 250 (312)
T ss_pred CCEEEEecCCCcchhHHHHHH
Confidence 799999999999999888774
No 69
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=95.07 E-value=0.072 Score=51.23 Aligned_cols=87 Identities=22% Similarity=0.300 Sum_probs=50.3
Q ss_pred EEEEEecCCh--hHHHHHHHHHHHHhcCCCe--EEEEcCc--hhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCc
Q 002705 692 TVLVLKKPGP--ALMEEAKEVASFLYHQEKM--NILVEPD--VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (890)
Q Consensus 692 kVlIV~K~~~--ea~e~a~eL~~~L~~~~gi--eV~vE~~--va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGD 765 (890)
+++||.+|.. .... ++++...|... +. +++.-+. ..+.+.. ........|.||++|||
T Consensus 1 k~~vi~Np~sG~~~~~-~~~v~~~l~~~-~~~~~~~~t~~~~~~~~~~~--------------~~~~~~~~~~ivv~GGD 64 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK-WKKVEPALRAA-GIDYEVIETESAGHAEALAR--------------ILALDDYPDVIVVVGGD 64 (130)
T ss_dssp SEEEEEETTSTTSHHH-HHHHHHHHHHT-TCEEEEEEESSTTHHHHHHH--------------HHHHTTS-SEEEEEESH
T ss_pred CEEEEECCCCCCCchh-HHHHHHHHHHc-CCceEEEEEeccchHHHHHH--------------HHhhccCccEEEEEcCc
Confidence 4678887764 2222 47777777663 43 3333222 1111100 01222335999999999
Q ss_pred hHHHHHHHhcCCCCC----cEEEEeCCCccccc
Q 002705 766 GVILHASNLFRGAVP----PVISFNLGSLGFLT 794 (890)
Q Consensus 766 GTlL~Aar~~~~~~~----PILGIN~G~LGFLt 794 (890)
||+=.++..+..... |+.=|-+|+-.=|+
T Consensus 65 GTl~~vv~~l~~~~~~~~~~l~iiP~GT~N~~a 97 (130)
T PF00781_consen 65 GTLNEVVNGLMGSDREDKPPLGIIPAGTGNDFA 97 (130)
T ss_dssp HHHHHHHHHHCTSTSSS--EEEEEE-SSS-HHH
T ss_pred cHHHHHHHHHhhcCCCccceEEEecCCChhHHH
Confidence 999999998877654 77777778654444
No 70
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=94.91 E-value=0.045 Score=56.29 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHh---cCCCCcEEEeCccCCChHHHHHHHHHH
Q 002705 331 TMEQVEKFASLVS---NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (890)
Q Consensus 331 s~E~v~af~~iL~---d~~~~PVLVHCtAGKDRTGalvaLlr~ 370 (890)
+.+.+..|++.+. .....|++|||.+|.+|||+++++...
T Consensus 151 ~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~ 193 (235)
T PF00102_consen 151 SPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDIL 193 (235)
T ss_dssp SSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHH
T ss_pred ccchhhhhhhhccccccCCccceEeecccccccccccccchhh
Confidence 3455555555543 235789999999999999988887654
No 71
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=94.90 E-value=0.044 Score=61.25 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=19.0
Q ss_pred CcEEEeCccCCChHHHHHHHH
Q 002705 348 KPLYLHSKEGVWRTYAMVSRW 368 (890)
Q Consensus 348 ~PVLVHCtAGKDRTGalvaLl 368 (890)
+|++|||.+|.+|||+++++-
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid 268 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAID 268 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHH
Confidence 799999999999999888764
No 72
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=94.81 E-value=0.11 Score=56.80 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=63.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCch----hhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH
Q 002705 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV----HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (890)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~v----a~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGT 767 (890)
|+++|.++.......+.++.+.|.+ .|+++.+.... +..+. .....+..|.||++|||||
T Consensus 1 ~~~~I~N~~~~~~~~~~~~~~~l~~-~g~~~~v~~t~~~~~a~~~a---------------~~~~~~~~d~vv~~GGDGT 64 (293)
T TIGR03702 1 KALLILNGKQADNEDVREAVGDLRD-EGIQLHVRVTWEKGDAQRYV---------------AEALALGVSTVIAGGGDGT 64 (293)
T ss_pred CEEEEEeCCccchhHHHHHHHHHHH-CCCeEEEEEecCCCCHHHHH---------------HHHHHcCCCEEEEEcCChH
Confidence 3566776654333456677788866 57665432111 11110 0111245799999999999
Q ss_pred HHHHHHhcCC----CCCcEEEEeCCCccccc-CCC-cccHHHHHHHHHcCC
Q 002705 768 ILHASNLFRG----AVPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 812 (890)
Q Consensus 768 lL~Aar~~~~----~~~PILGIN~G~LGFLt-e~~-~ed~~~~L~~Il~G~ 812 (890)
+=.++.-+.. ..+|+-=|-+|+-.=++ .+. +.+.+++++.++.|.
T Consensus 65 i~ev~ngl~~~~~~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~~g~ 115 (293)
T TIGR03702 65 LREVATALAQIRDDAAPALGLLPLGTANDFATAAGIPLEPAKALKLALNGA 115 (293)
T ss_pred HHHHHHHHHhhCCCCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHHhCC
Confidence 8888887653 23455545667544333 333 457889999998887
No 73
>PHA02738 hypothetical protein; Provisional
Probab=94.81 E-value=0.034 Score=62.08 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.1
Q ss_pred CCcEEEeCccCCChHHHHHHHH
Q 002705 347 KKPLYLHSKEGVWRTYAMVSRW 368 (890)
Q Consensus 347 ~~PVLVHCtAGKDRTGalvaLl 368 (890)
.+||+|||.+|.+|||+++++-
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaid 248 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVD 248 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHH
Confidence 4699999999999999877764
No 74
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=94.79 E-value=0.15 Score=60.20 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=68.9
Q ss_pred hcccCCCcEEEEEecCCh---hHHHHH-HHHHHHHhcCCCeEEEEcCchh----hhhhcCCCCccceeeeccCcccc-CC
Q 002705 684 LMWKTTPRTVLVLKKPGP---ALMEEA-KEVASFLYHQEKMNILVEPDVH----DIFARIPGFGFVQTFYLQDTSDL-HE 754 (890)
Q Consensus 684 L~W~~~pkkVlIV~K~~~---ea~e~a-~eL~~~L~~~~gieV~vE~~va----~~l~~~p~~~~v~~f~~~~~~el-~e 754 (890)
|.+-..|++++||.+|.. .+.... .++...|.+ .++++.+..... ..+. .++ ..
T Consensus 105 ~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~~~ghA~~la----------------~~~~~~ 167 (481)
T PLN02958 105 LDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETKYQLHAKEVV----------------RTMDLS 167 (481)
T ss_pred HhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEeccCccHHHHHH----------------HHhhhc
Confidence 344456889999999863 344554 356768866 576654322111 1110 011 24
Q ss_pred CccEEEEEcCchHHHHHHHhcCCC-------CCcEEEEeCCCccccc-CC----C-cccHHHHHHHHHcCCC
Q 002705 755 RVDFVACLGGDGVILHASNLFRGA-------VPPVISFNLGSLGFLT-SH----P-FEDYRQDLRQVIYGNN 813 (890)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~~~-------~~PILGIN~G~LGFLt-e~----~-~ed~~~~L~~Il~G~y 813 (890)
..|.||++||||||=.+++-+... .+|+-=|-.|+-.=++ .+ . +.+..+++..|+.|..
T Consensus 168 ~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~~ 239 (481)
T PLN02958 168 KYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHK 239 (481)
T ss_pred CCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCCc
Confidence 579999999999988888866532 4665555666433222 21 2 4567888888998873
No 75
>PLN02160 thiosulfate sulfurtransferase
Probab=94.51 E-value=0.17 Score=49.77 Aligned_cols=86 Identities=16% Similarity=0.305 Sum_probs=51.6
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCC----CCCCHHHHHHHHHHHhcCCCCcE
Q 002705 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR----TAPTMEQVEKFASLVSNSSKKPL 350 (890)
Q Consensus 275 pT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~----~~ps~E~v~af~~iL~d~~~~PV 350 (890)
++.+++..+.+.+ ..|||.|+.. + +. .-...|...+++|.... ...+.+....+...+ ..+.||
T Consensus 17 i~~~e~~~~~~~~-~~lIDVR~~~-E---~~-----~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~--~~~~~I 84 (136)
T PLN02160 17 VDVSQAKTLLQSG-HQYLDVRTQD-E---FR-----RGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLL--NPADDI 84 (136)
T ss_pred eCHHHHHHHHhCC-CEEEECCCHH-H---Hh-----cCCCCCcceecccchhcCcccccCCHHHHHHHHhcc--CCCCcE
Confidence 5777888777767 4799999986 1 11 11223434567776321 112233333333332 356799
Q ss_pred EEeCccCCChHHHHHHHHHHhCCC
Q 002705 351 YLHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 351 LVHCtAGKDRTGalvaLlr~~lGv 374 (890)
++||..|. |+...+..+.. .|.
T Consensus 85 ivyC~sG~-RS~~Aa~~L~~-~G~ 106 (136)
T PLN02160 85 LVGCQSGA-RSLKATTELVA-AGY 106 (136)
T ss_pred EEECCCcH-HHHHHHHHHHH-cCC
Confidence 99999998 99877666644 454
No 76
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=94.14 E-value=0.013 Score=50.59 Aligned_cols=43 Identities=16% Similarity=0.006 Sum_probs=35.2
Q ss_pred HHHHHHhhhhhhhhhhccchHHHhHHhhhccccccccccccch
Q 002705 396 RTRKLKASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDM 438 (890)
Q Consensus 396 ~~~k~~~~~~~~~l~s~~g~~e~~l~~~~~~~~~~~~~~r~nl 438 (890)
+++.+.|.+++..++++||+++.|+.+.+|+++++++.+|+++
T Consensus 25 ~~~~e~l~~~l~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 25 SVRPEYLEAALDAIDERYGSVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp S--HHHHHHHHHHHHHHHSSHHHHHHHT-T--HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHcCCCCHHHHHHHHHHc
Confidence 4567788899999999999999999999999999999999875
No 77
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=94.14 E-value=0.17 Score=46.09 Aligned_cols=85 Identities=14% Similarity=0.037 Sum_probs=46.3
Q ss_pred CHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 002705 276 TEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 354 (890)
Q Consensus 276 T~eDl~~L~~lGI-KTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHC 354 (890)
+++++..+.+.|= -.|||.|++. + +. .-...| -+++|+........+........+ ..++||+|||
T Consensus 2 s~~el~~~l~~~~~~~liDvR~~~-e---~~-----~ghi~g--a~~ip~~~~~~~~~~~~~~~~~~~--~~~~~ivv~C 68 (100)
T cd01523 2 DPEDLYARLLAGQPLFILDVRNES-D---YE-----RWKIDG--ENNTPYFDPYFDFLEIEEDILDQL--PDDQEVTVIC 68 (100)
T ss_pred CHHHHHHHHHcCCCcEEEEeCCHH-H---Hh-----hcccCC--CcccccccchHHHHHhhHHHHhhC--CCCCeEEEEc
Confidence 5667777665542 4799999975 1 11 011122 245666522110000012223333 3568999999
Q ss_pred ccCCChHHHHHHHHHHhCCCC
Q 002705 355 KEGVWRTYAMVSRWRQYMARC 375 (890)
Q Consensus 355 tAGKDRTGalvaLlr~~lGvs 375 (890)
.+|. |+..++..+.. .|.+
T Consensus 69 ~~G~-rs~~aa~~L~~-~G~~ 87 (100)
T cd01523 69 AKEG-SSQFVAELLAE-RGYD 87 (100)
T ss_pred CCCC-cHHHHHHHHHH-cCce
Confidence 9998 88766666544 5653
No 78
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=93.94 E-value=0.19 Score=48.44 Aligned_cols=35 Identities=34% Similarity=0.535 Sum_probs=27.2
Q ss_pred CccEEEEEcCchHHHHHHHhcCCCC-----CcEEEEeCCC
Q 002705 755 RVDFVACLGGDGVILHASNLFRGAV-----PPVISFNLGS 789 (890)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~~~~-----~PILGIN~G~ 789 (890)
..|.||++|||||+=.+++-+.... +|+.=|-.|+
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 4689999999999999998776443 6766666663
No 79
>PLN02204 diacylglycerol kinase
Probab=93.57 E-value=0.49 Score=57.16 Aligned_cols=112 Identities=22% Similarity=0.343 Sum_probs=61.3
Q ss_pred cceeeeeecCcceeeeee---cCCcccccCCchhhhhhcc-----------cCCCcEEEEEecCCh---hHHHHHHHHHH
Q 002705 650 AEMFLVRTDGFSCNREKV---TESSLAFTHPSTQQQMLMW-----------KTTPRTVLVLKKPGP---ALMEEAKEVAS 712 (890)
Q Consensus 650 ~~~~~~r~d~~sc~r~~~---~~s~~~~~~ps~~~~~L~W-----------~~~pkkVlIV~K~~~---ea~e~a~eL~~ 712 (890)
.+|+.+=-.++.++|-.. ......|.|++.+.. ..| ...+|+++|+.+|.. .....+.++..
T Consensus 106 ~~~~~f~v~~~~~~~~~~~~w~~~~~~f~~~d~~~~-~~w~~~l~~~l~~~~~r~k~llVivNP~sGkg~~~~~~~~V~p 184 (601)
T PLN02204 106 QEMYRFTVHGFQRSRKEPCLWVLAVYTFGHKDLQTC-QSWVDRLNASLNKEVGRPKNLLVFVHPLSGKGSGSRTWETVSP 184 (601)
T ss_pred ccceeeEEEEeeecccCCCcceeEEEeecCCCHHHH-HHHHHHHHHHHhhccCCCceEEEEECCCCCCcchHHHHHHHHH
Confidence 455544443444444332 223466777665432 122 136889999999863 35666778888
Q ss_pred HHhcCCCeE--EEEcCchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCchHHHHHHHh
Q 002705 713 FLYHQEKMN--ILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVILHASNL 774 (890)
Q Consensus 713 ~L~~~~gie--V~vE~~va~~l~~~p~~~~v~~f~~~~~~e-l~e~~DlVIvLGGDGTlL~Aar~ 774 (890)
.|.. .+++ |++-+...+... .. ....+ ..+..|.||++||||||=..++-
T Consensus 185 ~f~~-a~i~~~v~~T~~aghA~d------~~-----~~~~~~~l~~~D~VVaVGGDGt~nEVlNG 237 (601)
T PLN02204 185 IFIR-AKVKTKVIVTERAGHAFD------VM-----ASISNKELKSYDGVIAVGGDGFFNEILNG 237 (601)
T ss_pred HHHH-cCCeEEEEEecCcchHHH------HH-----HHHhhhhccCCCEEEEEcCccHHHHHHHH
Confidence 8876 4655 444332211100 00 00011 12457999999999997666653
No 80
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=93.48 E-value=0.3 Score=44.57 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=47.1
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002705 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (890)
Q Consensus 274 qpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVH 353 (890)
.++++++..+.+.+=-.|||.|++. + +. .....| -+++|+..... ....+.+ +.....++||+||
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~-e---~~-----~ghi~g--A~~ip~~~~~~-~~~~~~~---~~~~~~~~~ivvy 67 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDY-E---YD-----IGHFKG--AVNPDVDTFRE-FPFWLDE---NLDLLKGKKVLMY 67 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChh-h---hh-----cCEecc--ccCCCcccHhH-hHHHHHh---hhhhcCCCEEEEE
Confidence 4577788777655445899999875 1 11 011122 34566652110 0111211 1112456899999
Q ss_pred CccCCChHHHHHHHHHHhCCCC
Q 002705 354 SKEGVWRTYAMVSRWRQYMARC 375 (890)
Q Consensus 354 CtAGKDRTGalvaLlr~~lGvs 375 (890)
|.+|. |+...+..+. .+|..
T Consensus 68 C~~G~-rs~~a~~~L~-~~G~~ 87 (101)
T cd01518 68 CTGGI-RCEKASAYLK-ERGFK 87 (101)
T ss_pred CCCch-hHHHHHHHHH-HhCCc
Confidence 99998 9986655543 35653
No 81
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=93.36 E-value=0.093 Score=60.15 Aligned_cols=103 Identities=18% Similarity=0.240 Sum_probs=68.8
Q ss_pred CCHhh-HHHHHHc--CCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCC-CCCHHHHHHHHHHHhc------
Q 002705 275 VTEEG-LKWLMEK--GYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT-APTMEQVEKFASLVSN------ 344 (890)
Q Consensus 275 pT~eD-l~~L~~l--GIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~-~ps~E~v~af~~iL~d------ 344 (890)
.++.+ +..|+++ -+--+|||.... ..|. ....+..|+.|+.+--.... .|+.+.+..|..+++.
T Consensus 48 f~~~dl~~~l~~~~~~vgl~iDltnt~---ryy~---~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~ 121 (393)
T KOG2386|consen 48 FQPKDLFELLKEHNYKVGLKIDLTNTL---RYYD---KPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTK 121 (393)
T ss_pred cCHHHHHHHHHhcCceEEEEEecccee---eeec---cccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhccc
Confidence 34444 5667666 456799997654 2232 23456789999988876554 6777888887776542
Q ss_pred CCCCcEEEeCccCCChHH-HHHHHHHHhCCCCHHHHHHHh
Q 002705 345 SSKKPLYLHSKEGVWRTY-AMVSRWRQYMARCASQISGQT 383 (890)
Q Consensus 345 ~~~~PVLVHCtAGKDRTG-alvaLlr~~lGvs~ddIiaDY 383 (890)
...+=|++||+.|+.||| ++++++..-.+++..+|+.-+
T Consensus 122 ~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f 161 (393)
T KOG2386|consen 122 LDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRF 161 (393)
T ss_pred CCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHH
Confidence 123459999999999999 455555444668877776543
No 82
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=93.20 E-value=0.53 Score=52.31 Aligned_cols=111 Identities=20% Similarity=0.271 Sum_probs=70.1
Q ss_pred CcEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCch
Q 002705 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (890)
Q Consensus 690 pkkVlIV~K~~~---ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDG 766 (890)
.+++.++.++.. .....+.++.+.|++ .|.++.+-..... +....+ -..-.....|.||+.||||
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~-~g~~~~~~~t~~~--------g~a~~~---a~~a~~~~~D~via~GGDG 69 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEE-AGHELSVRVTEEA--------GDAIEI---AREAAVEGYDTVIAAGGDG 69 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHh-cCCeEEEEEeecC--------ccHHHH---HHHHHhcCCCEEEEecCcc
Confidence 457788887764 366778899999987 4655443211110 000000 0011123689999999999
Q ss_pred HHHHHHHhcCCCCCcEEEE-eCCCccccc---CCCcccHHHHHHHHHcCC
Q 002705 767 VILHASNLFRGAVPPVISF-NLGSLGFLT---SHPFEDYRQDLRQVIYGN 812 (890)
Q Consensus 767 TlL~Aar~~~~~~~PILGI-N~G~LGFLt---e~~~ed~~~~L~~Il~G~ 812 (890)
|+=.++.-+...+.|.||| =.|+..=++ .++.+++.++++.+.+|.
T Consensus 70 Tv~evingl~~~~~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~ 119 (301)
T COG1597 70 TVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLDDIEAALELIKSGE 119 (301)
T ss_pred hHHHHHHHHhcCCCCceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCC
Confidence 9999999888776663554 345544333 244446999999999987
No 83
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=93.07 E-value=0.55 Score=43.53 Aligned_cols=80 Identities=13% Similarity=0.141 Sum_probs=46.2
Q ss_pred CCCHhhHHHHHHcC-CcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002705 274 QVTEEGLKWLMEKG-YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (890)
Q Consensus 274 qpT~eDl~~L~~lG-IKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLV 352 (890)
.++.+++..+.+.| --.|||.|+.. + |. .....| -+++|+ ..+...+..+....+.||+|
T Consensus 11 ~i~~~~l~~~~~~~~~~~liDvR~~~-e---~~-----~ghIpg--ainip~--------~~l~~~~~~l~~~~~~~ivv 71 (109)
T cd01533 11 SVSADELAALQARGAPLVVLDGRRFD-E---YR-----KMTIPG--SVSCPG--------AELVLRVGELAPDPRTPIVV 71 (109)
T ss_pred cCCHHHHHHHHhcCCCcEEEeCCCHH-H---Hh-----cCcCCC--ceeCCH--------HHHHHHHHhcCCCCCCeEEE
Confidence 56788888776655 24699999975 1 11 001111 233443 23333333332234679999
Q ss_pred eCccCCChHHHHHHHHHHhCCC
Q 002705 353 HSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 353 HCtAGKDRTGalvaLlr~~lGv 374 (890)
||.+|. |+...+..++ ..|.
T Consensus 72 ~C~~G~-rs~~a~~~L~-~~G~ 91 (109)
T cd01533 72 NCAGRT-RSIIGAQSLI-NAGL 91 (109)
T ss_pred ECCCCc-hHHHHHHHHH-HCCC
Confidence 999998 8865554443 3575
No 84
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=92.93 E-value=0.14 Score=64.20 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhc---CCCCcEEEeCccCCChHHHHHHH
Q 002705 332 MEQVEKFASLVSN---SSKKPLYLHSKEGVWRTYAMVSR 367 (890)
Q Consensus 332 ~E~v~af~~iL~d---~~~~PVLVHCtAGKDRTGalvaL 367 (890)
+.++..|++.++. ..+-||+|||.||.+|||+++.+
T Consensus 1045 ~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~ 1083 (1144)
T KOG0792|consen 1045 PNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILM 1083 (1144)
T ss_pred hHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHH
Confidence 3445555555432 23569999999999999965543
No 85
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=92.88 E-value=1.4 Score=53.46 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcC---CCCcEEEeCccCCChHHHHHHH----HHHhCCCCHHHHHH
Q 002705 333 EQVEKFASLVSNS---SKKPLYLHSKEGVWRTYAMVSR----WRQYMARCASQISG 381 (890)
Q Consensus 333 E~v~af~~iL~d~---~~~PVLVHCtAGKDRTGalvaL----lr~~lGvs~ddIia 381 (890)
..+..|++-+... -.-||+|||..|.+|||+.+++ -+++.|+-.-||.+
T Consensus 910 rslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaA 965 (1004)
T KOG0793|consen 910 RSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAA 965 (1004)
T ss_pred HHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHH
Confidence 3456677766421 1459999999999999943332 34445666655544
No 86
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=92.56 E-value=0.56 Score=47.74 Aligned_cols=106 Identities=15% Similarity=0.091 Sum_probs=58.0
Q ss_pred HcCCcEEEEcCCCcccCcchhhhhHhhhhc---CCcEEEEEecCCCCCCCHHHHHHHHHHHhc-CCCCcEEEeCccCCCh
Q 002705 285 EKGYKTIVDIRAERVKDNFYEAAIDDAILS---GKVELIKIPVEVRTAPTMEQVEKFASLVSN-SSKKPLYLHSKEGVWR 360 (890)
Q Consensus 285 ~lGIKTVIDLRse~~ee~~~~a~e~~~~e~---~GI~yVhIPV~d~~~ps~E~v~af~~iL~d-~~~~PVLVHCtAGKDR 360 (890)
..|-+.++.|+...... ..++.. ..+. ..++=+..|=..+..|.++.+...++++.. ....|+||||-+|..|
T Consensus 30 rh~~t~mlsl~a~~t~~-~~pa~~--~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGISR 106 (172)
T COG5350 30 RHGPTHMLSLLAKGTYF-HRPAVI--AAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISR 106 (172)
T ss_pred hcCCceEEEeecccccc-cCcccc--chhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeecccccc
Confidence 34899999999864111 111110 0111 111112222222356788899998888853 3457999999999999
Q ss_pred HHHHHHHHH--HhCCCCHHHHHHHhhhcccccccc
Q 002705 361 TYAMVSRWR--QYMARCASQISGQTITSNDVLLKD 393 (890)
Q Consensus 361 TGalvaLlr--~~lGvs~ddIiaDYL~sn~~~~~~ 393 (890)
+.+.++..- .+-.++..+.-+..-.-.+|...|
T Consensus 107 StA~A~i~a~ala~~~de~ela~~Lra~sp~atPN 141 (172)
T COG5350 107 STAAALIAALALAPDMDETELAERLRALSPYATPN 141 (172)
T ss_pred chHHHHHHHHhhccccChHHHHHHHHhcCcccCCC
Confidence 996665522 122345554444222223444444
No 87
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=92.33 E-value=0.17 Score=57.29 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCCCCCC-HHHHHHHHHHHh---cCCCCcEEEeCccCCChHHHHHHHHHH
Q 002705 325 EVRTAPT-MEQVEKFASLVS---NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (890)
Q Consensus 325 ~d~~~ps-~E~v~af~~iL~---d~~~~PVLVHCtAGKDRTGalvaLlr~ 370 (890)
.+...|+ ...+.+|.+.+. .....|++|||.||.+|||++.|+=+.
T Consensus 261 Pd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~L 310 (374)
T KOG0791|consen 261 PDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRL 310 (374)
T ss_pred cccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHH
Confidence 3344443 344555655544 345789999999999999988877443
No 88
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=92.30 E-value=0.63 Score=43.79 Aligned_cols=95 Identities=11% Similarity=0.005 Sum_probs=49.7
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCC---------CCCCHHHHHHHHHHHhcCC
Q 002705 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR---------TAPTMEQVEKFASLVSNSS 346 (890)
Q Consensus 276 T~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~---------~~ps~E~v~af~~iL~d~~ 346 (890)
+++++..+...+--.|||.|+.+ +... ...+-......|. +++|.... ..++.+.+.+++.......
T Consensus 3 ~~~~l~~~l~~~~~~ivDvR~~~-~~~~-~~~~~~~ghI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd01448 3 SPDWLAEHLDDPDVRILDARWYL-PDRD-GRKEYLEGHIPGA--VFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISN 78 (122)
T ss_pred CHHHHHHHhCCCCeEEEEeecCC-CCCc-hhhHHhhCCCCCC--EEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 55666665554335799999984 1100 0000011122332 55665321 2244566666665443346
Q ss_pred CCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 002705 347 KKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (890)
Q Consensus 347 ~~PVLVHCtAGKDRTGalvaLlr~~lGvs 375 (890)
+.||+|+|..|-.|+..++..+ ..+|.+
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCEEEEECCCCCccHHHHHHHH-HHcCCC
Confidence 7899999999732544444333 446754
No 89
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=91.65 E-value=0.25 Score=55.88 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.7
Q ss_pred CCCcEEEeCccCCChHHHHHHHH
Q 002705 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (890)
Q Consensus 346 ~~~PVLVHCtAGKDRTGalvaLl 368 (890)
..+|++|||.+|.+|||+++++-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHH
Confidence 45799999999999999877653
No 90
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=89.87 E-value=1 Score=40.95 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=47.1
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcE-EEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 002705 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVE-LIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 355 (890)
Q Consensus 277 ~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~-yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHCt 355 (890)
......+...+--.|||.|++. + +. ..+-.. .+|+|+........... ...++|++|+|.
T Consensus 9 ~~~~~~~~~~~~~~liDvR~~~-e---~~-------~~~i~~~~~~ip~~~~~~~~~~~~--------~~~~~~ivv~C~ 69 (110)
T COG0607 9 EDEAALLLAGEDAVLLDVREPE-E---YE-------RGHIPGAAINIPLSELKAAENLLE--------LPDDDPIVVYCA 69 (110)
T ss_pred HHHHHHhhccCCCEEEeccChh-H---hh-------hcCCCcceeeeecccchhhhcccc--------cCCCCeEEEEeC
Confidence 3344555556788999999985 1 11 111122 77888874321100000 245789999999
Q ss_pred cCCChHHHHHHHHHHhCCC
Q 002705 356 EGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 356 AGKDRTGalvaLlr~~lGv 374 (890)
+|. |++..+..+.. +|.
T Consensus 70 ~G~-rS~~aa~~L~~-~G~ 86 (110)
T COG0607 70 SGV-RSAAAAAALKL-AGF 86 (110)
T ss_pred CCC-ChHHHHHHHHH-cCC
Confidence 999 99877777655 453
No 91
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=89.52 E-value=1.1 Score=40.74 Aligned_cols=86 Identities=24% Similarity=0.235 Sum_probs=45.7
Q ss_pred CHhhHHHHHH-cCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCC---CCCHHHHHHHHHHHhcCCCCcEE
Q 002705 276 TEEGLKWLME-KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT---APTMEQVEKFASLVSNSSKKPLY 351 (890)
Q Consensus 276 T~eDl~~L~~-lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~---~ps~E~v~af~~iL~d~~~~PVL 351 (890)
+.+++..+.+ .+=.+|||.|++. + +. .-...|. +++|+.... .++.+.+.+++.......+.||+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~-e---~~-----~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 70 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPE-E---LK-----TGKIPGA--INIPLSSLPDALALSEEEFEKKYGFPKPSKDKELI 70 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHH-H---Hh-----cCcCCCc--EEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEE
Confidence 3455555544 4336799999975 1 11 0111232 456664321 22344444444332223577999
Q ss_pred EeCccCCChHHHHHHHHHHhCCC
Q 002705 352 LHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 352 VHCtAGKDRTGalvaLlr~~lGv 374 (890)
++|..|. |+..++.++ ..+|.
T Consensus 71 v~c~~g~-~s~~~~~~l-~~~G~ 91 (106)
T cd01519 71 FYCKAGV-RSKAAAELA-RSLGY 91 (106)
T ss_pred EECCCcH-HHHHHHHHH-HHcCC
Confidence 9999997 766544444 44565
No 92
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=89.20 E-value=0.3 Score=56.46 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhc-----CCCCcEEEeCccCCChHHH
Q 002705 332 MEQVEKFASLVSN-----SSKKPLYLHSKEGVWRTYA 363 (890)
Q Consensus 332 ~E~v~af~~iL~d-----~~~~PVLVHCtAGKDRTGa 363 (890)
+-.+..|++-+.. ...+||.|||+||.+|||+
T Consensus 431 Pg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGT 467 (600)
T KOG0790|consen 431 PGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGT 467 (600)
T ss_pred ccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcce
Confidence 4456677766532 2357999999999999993
No 93
>PRK01415 hypothetical protein; Validated
Probab=88.38 E-value=4.2 Score=44.38 Aligned_cols=168 Identities=13% Similarity=0.062 Sum_probs=88.2
Q ss_pred cCCCcccchhhhhhhhhHHHHHHHhccCCCC-cchh-----hHHHHHHHHHh--hhccCCCCCCCCCCCCcCCCCceeEE
Q 002705 181 QLPPLAIFRSEMKRCCESMHIALENYLTPED-VRSL-----DVWRKLQRLKN--VCYDSGFPRGDDYPIHTLFANWSPVY 252 (890)
Q Consensus 181 ~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~-~~~l-----~v~~kLqr~~~--~~~d~g~pr~~g~p~~~~i~Nw~~V~ 252 (890)
.+++..-+|..+..+|..+.+..-=|+++++ -.++ .|..=++.+++ .+-|+.+ -..+++..+|...+. .
T Consensus 15 ~i~~~~~~~~~l~~~~~~~~~~G~i~la~EGIN~tisg~~~~~~~~~~~l~~~~~~~~~~~--k~s~~~~~~F~~l~v-r 91 (247)
T PRK01415 15 NIEEPANLIPKLLLIGKRKYVRGTILLANEGFNGSFSGSYENVNLVLEELIKLTGPKDVNV--KINYSDVHPFQKLKV-R 91 (247)
T ss_pred cCCCHHHHHHHHHHHHHHcCCeeEEEEccCccceEeeCCHHHHHHHHHHHHhCcCCCCcee--ecccccCCCCCccEE-E
Confidence 3455667899999999998888888888887 1111 11222223332 1111111 223444455555553 2
Q ss_pred ecC-CCcccc-cCCCcccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCC
Q 002705 253 LSN-SKDDIA-SKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAP 330 (890)
Q Consensus 253 ls~-~~~~~~-~~~~e~~LYRSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~p 330 (890)
+.+ +..... ...+ ..-++..++++++..|.+..=-.|||.|.+. |-. .-...| -+++|+.
T Consensus 92 ~k~eiV~~g~~~~~~--~~~~g~~i~p~e~~~ll~~~~~vvIDVRn~~-E~~--------~Ghi~g--Ainip~~----- 153 (247)
T PRK01415 92 LKKEIVAMNVDDLNV--DLFKGEYIEPKDWDEFITKQDVIVIDTRNDY-EVE--------VGTFKS--AINPNTK----- 153 (247)
T ss_pred eeceEEecCCCCCCc--cccCccccCHHHHHHHHhCCCcEEEECCCHH-HHh--------cCCcCC--CCCCChH-----
Confidence 111 000000 1111 1224557899999888876556799999975 110 000011 1334433
Q ss_pred CHHHHHHHHHH----HhcCCCCcEEEeCccCCChHHHHHHHHHHhCCC
Q 002705 331 TMEQVEKFASL----VSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 331 s~E~v~af~~i----L~d~~~~PVLVHCtAGKDRTGalvaLlr~~lGv 374 (890)
.+.+|-+. .....++||+++|++|. |+-.++..++. .|.
T Consensus 154 ---~f~e~~~~~~~~~~~~k~k~Iv~yCtgGi-Rs~kAa~~L~~-~Gf 196 (247)
T PRK01415 154 ---TFKQFPAWVQQNQELLKGKKIAMVCTGGI-RCEKSTSLLKS-IGY 196 (247)
T ss_pred ---HHhhhHHHHhhhhhhcCCCeEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 22222111 11245789999999998 98877776654 453
No 94
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=87.68 E-value=1.3 Score=41.19 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=47.9
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhh---hHhhhhcCCcEEEEEecCCC-----CCCCHHHHHHHHHHHhcCCC
Q 002705 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAA---IDDAILSGKVELIKIPVEVR-----TAPTMEQVEKFASLVSNSSK 347 (890)
Q Consensus 276 T~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~---e~~~~e~~GI~yVhIPV~d~-----~~ps~E~v~af~~iL~d~~~ 347 (890)
+++++..+.+.+=-.|||.|+.. +-...... +...-...| -+++|+... ..+.++.+.+++.-+.-..+
T Consensus 2 s~~~l~~~l~~~~~~iiDvR~~~-e~~~~~~~~~~~~~~ghIpg--A~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T cd01449 2 TAEEVLANLDSGDVQLVDARSPE-RFRGEVPEPRPGLRSGHIPG--AVNIPWTSLLDEDGTFKSPEELRALFAALGITPD 78 (118)
T ss_pred CHHHHHHhcCCCCcEEEeCCCHH-HcCCcCCCCCCCCcCCcCCC--CcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC
Confidence 45666665544324799999975 11110000 000001122 244554321 11344555555443322457
Q ss_pred CcEEEeCccCCChHHHHHHHHHHhCCCC
Q 002705 348 KPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (890)
Q Consensus 348 ~PVLVHCtAGKDRTGalvaLlr~~lGvs 375 (890)
.||+++|..|. |+..++..+ ..+|.+
T Consensus 79 ~~iv~yc~~g~-~s~~~~~~l-~~~G~~ 104 (118)
T cd01449 79 KPVIVYCGSGV-TACVLLLAL-ELLGYK 104 (118)
T ss_pred CCEEEECCcHH-HHHHHHHHH-HHcCCC
Confidence 89999999987 877665544 345654
No 95
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=87.24 E-value=1.8 Score=43.13 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=50.7
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCC-cEEEEEecCCCCCCCHHHHHHHHHHHh---cCCCCcEE
Q 002705 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGK-VELIKIPVEVRTAPTMEQVEKFASLVS---NSSKKPLY 351 (890)
Q Consensus 276 T~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~G-I~yVhIPV~d~~~ps~E~v~af~~iL~---d~~~~PVL 351 (890)
+-++...|.+.|=+..||.|.++ |- +..+ -.-|+||+......-...=.+|.+.+. -.....|+
T Consensus 26 ~~~qvk~L~~~~~~~llDVRepe-Ef-----------k~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiI 93 (136)
T KOG1530|consen 26 SVEQVKNLLQHPDVVLLDVREPE-EF-----------KQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEII 93 (136)
T ss_pred EHHHHHHHhcCCCEEEEeecCHH-Hh-----------hccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEE
Confidence 45667777777879999999986 21 1111 357888886332211111234555543 23345899
Q ss_pred EeCccCCChHHHHHHHHHH
Q 002705 352 LHSKEGVWRTYAMVSRWRQ 370 (890)
Q Consensus 352 VHCtAGKDRTGalvaLlr~ 370 (890)
|||.+|+ |.....-++..
T Consensus 94 f~C~SG~-Rs~~A~~~l~s 111 (136)
T KOG1530|consen 94 FGCASGV-RSLKATKILVS 111 (136)
T ss_pred EEeccCc-chhHHHHHHHH
Confidence 9999999 98865555443
No 96
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=87.17 E-value=3 Score=37.99 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=45.8
Q ss_pred CCCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc-CCCCcE
Q 002705 274 QVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-SSKKPL 350 (890)
Q Consensus 274 qpT~eDl~~L~~lG--IKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d-~~~~PV 350 (890)
|++++++..+.+.+ --.|||+|+.. + +. .....|. +++|.. .+..+.+.+.. ..+.|+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~-e---~~-----~~hI~ga--~~ip~~--------~~~~~~~~~~~~~~~~~v 61 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPE-E---LE-----IAFLPGF--LHLPMS--------EIPERSKELDSDNPDKDI 61 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHH-H---Hh-----cCcCCCC--EecCHH--------HHHHHHHHhcccCCCCeE
Confidence 56777777766654 34799999975 1 11 0112222 344432 23334444421 246799
Q ss_pred EEeCccCCChHHHHHHHHHHhCCCC
Q 002705 351 YLHSKEGVWRTYAMVSRWRQYMARC 375 (890)
Q Consensus 351 LVHCtAGKDRTGalvaLlr~~lGvs 375 (890)
+++|..|. |+-..+..+.. .|.+
T Consensus 62 v~~c~~g~-rs~~~~~~l~~-~G~~ 84 (101)
T cd01528 62 VVLCHHGG-RSMQVAQWLLR-QGFE 84 (101)
T ss_pred EEEeCCCc-hHHHHHHHHHH-cCCc
Confidence 99999996 87655555544 5653
No 97
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=86.48 E-value=2.8 Score=37.88 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=47.5
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCC----CCCCCHHHHHHHHHHHhc--CCCCc
Q 002705 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV----RTAPTMEQVEKFASLVSN--SSKKP 349 (890)
Q Consensus 276 T~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d----~~~ps~E~v~af~~iL~d--~~~~P 349 (890)
|++++..+.+.+=-.|||.|+.. + |. .-...|- +|+|... ......+.+..+...... ..+.+
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~-~---~~-----~~hI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPE-E---YE-----RGHIPGA--VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKD 69 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHH-H---HH-----HSBETTE--EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSE
T ss_pred CHHHHHhhhhCCCeEEEEeCCHH-H---HH-----cCCCCCC--cccccccccccccccccccccccccccccccccccc
Confidence 46777777655778999999875 1 21 1122333 7888842 223334444444333322 45668
Q ss_pred EEEeCccCCChHHHHHHH
Q 002705 350 LYLHSKEGVWRTYAMVSR 367 (890)
Q Consensus 350 VLVHCtAGKDRTGalvaL 367 (890)
|+|+|..|. |++.++++
T Consensus 70 iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 70 IVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp EEEEESSSC-HHHHHHHH
T ss_pred ceeeeeccc-ccchhHHH
Confidence 999998888 88865555
No 98
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=86.47 E-value=2.7 Score=40.48 Aligned_cols=86 Identities=13% Similarity=0.158 Sum_probs=46.9
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCC----------CC------------H
Q 002705 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTA----------PT------------M 332 (890)
Q Consensus 275 pT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~----------ps------------~ 332 (890)
++++++..+.+.++ .|||.|++. + +. .-...|. +++|+..... .. .
T Consensus 1 ~s~~el~~~l~~~~-~iiDvR~~~-e---~~-----~ghIpgA--inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (128)
T cd01520 1 ITAEDLLALRKADG-PLIDVRSPK-E---FF-----EGHLPGA--INLPLLDDEERALVGTLYKQQGREAAIELGLELVS 68 (128)
T ss_pred CCHHHHHHHHhcCC-EEEECCCHH-H---hc-----cCcCCCc--EEccCCChhHHHHhhhheeccCHHHHHHHHHHHHh
Confidence 35677776666554 699999875 1 11 0111232 4677752210 00 1
Q ss_pred HHHHHHHHHHh---cCCCCcEEEeCc-cCCChHHHHHHHHHHhCCC
Q 002705 333 EQVEKFASLVS---NSSKKPLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 333 E~v~af~~iL~---d~~~~PVLVHCt-AGKDRTGalvaLlr~~lGv 374 (890)
+.++++.+.+. -..+.||+|+|. +|. |+..++.++ ..+|.
T Consensus 69 ~~~~~~~~~~~~~~i~~~~~vvvyC~~~G~-rs~~a~~~L-~~~G~ 112 (128)
T cd01520 69 GKLKRILNEAWEARLERDPKLLIYCARGGM-RSQSLAWLL-ESLGI 112 (128)
T ss_pred hhHHHHHHHHHHhccCCCCeEEEEeCCCCc-cHHHHHHHH-HHcCC
Confidence 22334444331 245679999997 566 888666444 44675
No 99
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=86.29 E-value=2.8 Score=37.33 Aligned_cols=79 Identities=14% Similarity=0.237 Sum_probs=42.4
Q ss_pred CCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002705 275 VTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (890)
Q Consensus 275 pT~eDl~~L~~lGI-KTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVH 353 (890)
++++++..+.+.+- -.|||+|+.. + +. . ......| -+++|. ..+..+...+ ..+.||+||
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~-e---~~-~--~~~hi~g--a~~ip~--------~~~~~~~~~~--~~~~~ivv~ 62 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPA-S---YA-A--LPDHIPG--AIHLDE--------DSLDDWLGDL--DRDRPVVVY 62 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHH-H---Hh-c--ccCCCCC--CeeCCH--------HHHHHHHhhc--CCCCCEEEE
Confidence 45667766655432 4699999874 1 11 0 0000111 222333 2344444433 457899999
Q ss_pred CccCCChHHHHHHHHHHhCCC
Q 002705 354 SKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 354 CtAGKDRTGalvaLlr~~lGv 374 (890)
|..|. |+..++..+.. .|.
T Consensus 63 c~~g~-~s~~a~~~l~~-~G~ 81 (96)
T cd01444 63 CYHGN-SSAQLAQALRE-AGF 81 (96)
T ss_pred eCCCC-hHHHHHHHHHH-cCC
Confidence 99887 76655555543 464
No 100
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=85.24 E-value=4.1 Score=36.41 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=42.5
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 002705 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 355 (890)
Q Consensus 276 T~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHCt 355 (890)
+++++..+.+.++ .|||+|+.+ + +. .-...| .+++|+ +.+...+..+ ..+.|++++|.
T Consensus 2 ~~~e~~~~~~~~~-~iiD~R~~~-~---~~-----~~hipg--A~~ip~--------~~~~~~~~~~--~~~~~vvl~c~ 59 (90)
T cd01524 2 QWHELDNYRADGV-TLIDVRTPQ-E---FE-----KGHIKG--AINIPL--------DELRDRLNEL--PKDKEIIVYCA 59 (90)
T ss_pred CHHHHHHHhcCCC-EEEECCCHH-H---Hh-----cCCCCC--CEeCCH--------HHHHHHHHhc--CCCCcEEEEcC
Confidence 5677888776565 599999875 1 11 001112 234443 2333333333 34679999999
Q ss_pred cCCChHHHHHHHHHHhCCC
Q 002705 356 EGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 356 AGKDRTGalvaLlr~~lGv 374 (890)
.|. |....+..++ ..|.
T Consensus 60 ~g~-~a~~~a~~L~-~~G~ 76 (90)
T cd01524 60 VGL-RGYIAARILT-QNGF 76 (90)
T ss_pred CCh-hHHHHHHHHH-HCCC
Confidence 987 6665544443 3554
No 101
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=85.02 E-value=0.7 Score=52.05 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=40.7
Q ss_pred CCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC-------C---CcccccCCCcccHHHHHHHHHc
Q 002705 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVIY 810 (890)
Q Consensus 754 e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~-------G---~LGFLte~~~ed~~~~L~~Il~ 810 (890)
-++|.+|+||||||+-.|.. +....+|++||-. | ++||-|..+. +.+.++.+..
T Consensus 93 ~~Id~LivIGGdgS~~~a~~-L~~~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~--~~~~i~~i~~ 156 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIARR-LADKGLPVVGVPKTIDNDLEATDYTFGFDTAVEI--ATEALDRLHT 156 (324)
T ss_pred cCCCEEEEECCchHHHHHHH-HHhcCCCEEeeccccCCCCcCCccCcCHHHHHHH--HHHHHHHHHH
Confidence 37899999999999865554 4445799999954 3 7999997665 6667776654
No 102
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=85.00 E-value=5.7 Score=37.64 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=46.2
Q ss_pred CCHhhHHHHHHcC-CcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCC--CCHHHHHHHHHHHhcCCCCcEE
Q 002705 275 VTEEGLKWLMEKG-YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTA--PTMEQVEKFASLVSNSSKKPLY 351 (890)
Q Consensus 275 pT~eDl~~L~~lG-IKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~--ps~E~v~af~~iL~d~~~~PVL 351 (890)
++++++..+.+.+ =-.|||.|+.. +... .-...| -+++|...... ++......+...+ ..++||+
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~-e~~~-------~ghIpg--A~~ip~~~~~~~~~~~~~~~~l~~~~--~~~~~iv 68 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEA-EWKF-------VGGVPD--AVHVAWQVYPDMEINPNFLAELEEKV--GKDRPVL 68 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHH-HHhc-------ccCCCC--ceecchhhccccccCHHHHHHHHhhC--CCCCeEE
Confidence 3566776666553 35699999875 1100 011122 35556542211 1222222222322 3568999
Q ss_pred EeCccCCChHHHHHHHHHHhCCC
Q 002705 352 LHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 352 VHCtAGKDRTGalvaLlr~~lGv 374 (890)
++|..|. |+...+..++. +|.
T Consensus 69 v~C~~G~-rs~~aa~~L~~-~G~ 89 (117)
T cd01522 69 LLCRSGN-RSIAAAEAAAQ-AGF 89 (117)
T ss_pred EEcCCCc-cHHHHHHHHHH-CCC
Confidence 9999997 88866655544 564
No 103
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=84.81 E-value=2.3 Score=38.48 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=44.4
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002705 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (890)
Q Consensus 274 qpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVH 353 (890)
.++++++..+.+.+ -.|||+|+.+ + +. .-...| -+++|..... .....+ ..+.||+++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR~~~-e---~~-----~~hi~g--a~~ip~~~~~--------~~~~~~--~~~~~iv~~ 60 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIREPD-E---YL-----RERIPG--ARLVPLSQLE--------SEGLPL--VGANAIIFH 60 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECCCHH-H---HH-----hCcCCC--CEECChhHhc--------ccccCC--CCCCcEEEE
Confidence 45778887776667 6899999975 1 11 001122 2455544211 100112 456799999
Q ss_pred CccCCChHHHHHHHHHHhCCC
Q 002705 354 SKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 354 CtAGKDRTGalvaLlr~~lGv 374 (890)
|..|. |+..++..++. .|.
T Consensus 61 c~~g~-~s~~~~~~L~~-~g~ 79 (99)
T cd01527 61 CRSGM-RTQQNAERLAA-ISA 79 (99)
T ss_pred eCCCc-hHHHHHHHHHH-cCC
Confidence 99998 77765555543 353
No 104
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=84.45 E-value=6.3 Score=35.56 Aligned_cols=78 Identities=19% Similarity=0.155 Sum_probs=41.7
Q ss_pred CHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002705 276 TEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (890)
Q Consensus 276 T~eDl~~L~~lG--IKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVH 353 (890)
+++++..+.+.+ --.+||.|+.. + +. .....| -+++|.. .+......+....+.||+++
T Consensus 2 s~~~l~~~~~~~~~~~~liDvR~~~-e---~~-----~ghipg--a~~ip~~--------~l~~~~~~~~~~~~~~iv~~ 62 (95)
T cd01534 2 GAAELARWAAEGDRTVYRFDVRTPE-E---YE-----AGHLPG--FRHTPGG--------QLVQETDHFAPVRGARIVLA 62 (95)
T ss_pred CHHHHHHHHHcCCCCeEEEECCCHH-H---HH-----hCCCCC--cEeCCHH--------HHHHHHHHhcccCCCeEEEE
Confidence 566777766655 34689999865 1 11 011122 2345542 12111122212236789999
Q ss_pred CccCCChHHHHHHHHHHhCCC
Q 002705 354 SKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 354 CtAGKDRTGalvaLlr~~lGv 374 (890)
|..|. |+...+..+ ..+|.
T Consensus 63 c~~G~-rs~~aa~~L-~~~G~ 81 (95)
T cd01534 63 DDDGV-RADMTASWL-AQMGW 81 (95)
T ss_pred CCCCC-hHHHHHHHH-HHcCC
Confidence 99998 776544444 44665
No 105
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=84.29 E-value=0.46 Score=60.14 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhc---CCCCcEEEeCccCCChHHH
Q 002705 332 MEQVEKFASLVSN---SSKKPLYLHSKEGVWRTYA 363 (890)
Q Consensus 332 ~E~v~af~~iL~d---~~~~PVLVHCtAGKDRTGa 363 (890)
+..+.+|++-+.. ...+|++|||.||.+|||+
T Consensus 712 ~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~ 746 (1087)
T KOG4228|consen 712 PTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGC 746 (1087)
T ss_pred chHHHHHHHHhccCCCcCCCCEEEECCCCCCCcce
Confidence 3456667666643 2459999999999999994
No 106
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=84.18 E-value=2.4 Score=40.35 Aligned_cols=86 Identities=17% Similarity=0.351 Sum_probs=45.8
Q ss_pred CCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHH--HHHHHhcCCCCcE
Q 002705 274 QVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEK--FASLVSNSSKKPL 350 (890)
Q Consensus 274 qpT~eDl~~L~~lGI-KTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~a--f~~iL~d~~~~PV 350 (890)
.++++++..+.+.+- -.|||+|+.. + +. .....| -+++|....... ...+.. +.... ...++|+
T Consensus 9 ~is~~el~~~~~~~~~~~ivDvR~~~-e---~~-----~~hIpg--ai~ip~~~~~~~-~~~~~~~~~~~~~-~~~~~~i 75 (122)
T cd01526 9 RVSVKDYKNILQAGKKHVLLDVRPKV-H---FE-----ICRLPE--AINIPLSELLSK-AAELKSLQELPLD-NDKDSPI 75 (122)
T ss_pred ccCHHHHHHHHhCCCCeEEEEcCCHH-H---hh-----cccCCC--CeEccHHHHhhh-hhhhhhhhhcccc-cCCCCcE
Confidence 568888888776633 3599999975 1 11 011122 345565421110 000100 11111 2457899
Q ss_pred EEeCccCCChHHHHHHHHHHhCCC
Q 002705 351 YLHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 351 LVHCtAGKDRTGalvaLlr~~lGv 374 (890)
+++|.+|. |+...+..++. .|.
T Consensus 76 vv~C~~G~-rs~~aa~~L~~-~G~ 97 (122)
T cd01526 76 YVVCRRGN-DSQTAVRKLKE-LGL 97 (122)
T ss_pred EEECCCCC-cHHHHHHHHHH-cCC
Confidence 99999997 87755544433 565
No 107
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=83.51 E-value=2.6 Score=43.35 Aligned_cols=75 Identities=9% Similarity=0.189 Sum_probs=45.8
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCch---H
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG---V 767 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDG---T 767 (890)
++|+||-+.+.... .+.++|.+ .|+++.+-.... .+.+++ +.+|.||+.||-| .
T Consensus 2 ~~iliid~~dsf~~----~i~~~l~~-~g~~~~v~~~~~-----------------~~~~~l-~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSFTF----NLVDLIRK-LGVPMQVVNVED-----------------LDLDEV-ENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCchHH----HHHHHHHH-cCCcEEEEECCc-----------------cChhHh-ccCCEEEECCCCCChHH
Confidence 58899988876433 36677766 476555422100 011122 3579999999998 2
Q ss_pred ---HHHHHHhcCCCCCcEEEEeCCC
Q 002705 768 ---ILHASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 768 ---lL~Aar~~~~~~~PILGIN~G~ 789 (890)
++...+.+ ...+|||||-+|+
T Consensus 59 ~~~~~~~i~~~-~~~~PiLGIClG~ 82 (190)
T PRK06895 59 YPQLFAMLERY-HQHKSILGVCLGH 82 (190)
T ss_pred hhHHHHHHHHh-cCCCCEEEEcHHH
Confidence 23333332 3579999999983
No 108
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.44 E-value=1.2 Score=53.34 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=21.4
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHH
Q 002705 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (890)
Q Consensus 344 d~~~~PVLVHCtAGKDRTGalvaLlr~ 370 (890)
+....||||||+-|.|||.=++++...
T Consensus 371 e~~~~sVlVHCSDGWDRT~QlvsLA~L 397 (717)
T KOG4471|consen 371 ESESRSVLVHCSDGWDRTAQLVSLAML 397 (717)
T ss_pred hcCCceEEEEcCCCccchHHHHHHHHH
Confidence 356789999999999999966555433
No 109
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=83.38 E-value=5 Score=38.53 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=19.3
Q ss_pred CCCCcEEEeCc-cCCChHHHHHHHHHH
Q 002705 345 SSKKPLYLHSK-EGVWRTYAMVSRWRQ 370 (890)
Q Consensus 345 ~~~~PVLVHCt-AGKDRTGalvaLlr~ 370 (890)
..+.+|+|||. +|. |+..++..++.
T Consensus 66 ~~~~~vv~yC~~sg~-rs~~aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSSK-RGPRMARHLRN 91 (121)
T ss_pred CCCCEEEEECCCccc-cHHHHHHHHHH
Confidence 35789999997 887 98877776654
No 110
>PRK14071 6-phosphofructokinase; Provisional
Probab=82.91 E-value=1.1 Score=51.11 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=41.1
Q ss_pred CccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC----------CCcccccCCCcccHHHHHHHHHc
Q 002705 755 RVDFVACLGGDGVILHASNLFRGAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVIY 810 (890)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~----------G~LGFLte~~~ed~~~~L~~Il~ 810 (890)
++|.+|+||||||+-.+.++.....+|++||-- -++||-|..+. ..+.++.+..
T Consensus 107 ~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~--~~~~id~i~~ 170 (360)
T PRK14071 107 GLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNI--ATEALDRLHF 170 (360)
T ss_pred CCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHH--HHHHHHHHHh
Confidence 789999999999986554444334899999843 48999998776 5667777764
No 111
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=80.09 E-value=5.6 Score=36.76 Aligned_cols=78 Identities=12% Similarity=0.136 Sum_probs=43.5
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002705 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (890)
Q Consensus 274 qpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVH 353 (890)
.++++++..+.+.+=-.|||+|+.. + +. .-...| -+++|. ..+..++..+ ..+.|++|+
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR~~~-e---~~-----~ghi~g--A~~ip~--------~~l~~~~~~~--~~~~~ivv~ 64 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIRDPQ-S---FA-----MGHAPG--AFHLTN--------DSLGAFMRQA--DFDTPVMVM 64 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcCCHH-H---Hh-----cCCCCC--CeECCH--------HHHHHHHHhc--CCCCCEEEE
Confidence 3567777766544335799999875 1 11 001112 133332 3344555444 357799999
Q ss_pred CccCCChHHHHHHHHHHhCCC
Q 002705 354 SKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 354 CtAGKDRTGalvaLlr~~lGv 374 (890)
|..|. |...++..+ ...|.
T Consensus 65 c~~g~-~s~~a~~~L-~~~G~ 83 (108)
T PRK00162 65 CYHGN-SSQGAAQYL-LQQGF 83 (108)
T ss_pred eCCCC-CHHHHHHHH-HHCCc
Confidence 99998 765444333 33564
No 112
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=79.26 E-value=1.6 Score=48.71 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=40.8
Q ss_pred CCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC----------CCcccccCCCcccHHHHHHHHH
Q 002705 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVI 809 (890)
Q Consensus 754 e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~----------G~LGFLte~~~ed~~~~L~~Il 809 (890)
.++|.+|+||||||+=.|..+....++|++||-. -++||-|.++. +.+.++++.
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~~--~~~~i~~i~ 153 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALNT--IIDAVDKIR 153 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHHH--HHHHHHHHH
Confidence 3789999999999987777665546899999954 38899886543 455666664
No 113
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=79.01 E-value=5 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=18.0
Q ss_pred cCCCccEEEEEcCchHHHHHHHh
Q 002705 752 LHERVDFVACLGGDGVILHASNL 774 (890)
Q Consensus 752 l~e~~DlVIvLGGDGTlL~Aar~ 774 (890)
+....|+|+|.|||||+=..+--
T Consensus 113 ~~t~~Dii~VaGGDGT~~eVVTG 135 (535)
T KOG4435|consen 113 VDTQEDIIYVAGGDGTIGEVVTG 135 (535)
T ss_pred hccCCCeEEEecCCCcHHHhhHH
Confidence 34445999999999999877653
No 114
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=78.69 E-value=2.5 Score=48.20 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=23.4
Q ss_pred HHHHhcCCCCcEEEeCccCCChHHHHHHHHHH
Q 002705 339 ASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (890)
Q Consensus 339 ~~iL~d~~~~PVLVHCtAGKDRTGalvaLlr~ 370 (890)
++.+ ...+.+|||||..|.|||..+.+|...
T Consensus 224 ~~~l-~~~~~~Vlvh~~dGwDrt~q~~sL~ql 254 (353)
T PF06602_consen 224 ADLL-HDEGSSVLVHCSDGWDRTSQLSSLAQL 254 (353)
T ss_dssp HHHH-HTT--EEEEECTTSSSHHHHHHHHHHH
T ss_pred HHHh-hccCceEEEEcCCCCcccHHHHHHHHH
Confidence 3344 356789999999999999988888766
No 115
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=78.50 E-value=5.7 Score=37.59 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=36.2
Q ss_pred CcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHH
Q 002705 288 YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSR 367 (890)
Q Consensus 288 IKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHCtAGKDRTGalvaL 367 (890)
=++|||.|+++ + +. .-...| -+++|+. ++...++.+....+.|++++|.+|. |+...+..
T Consensus 20 ~~~lIDvR~~~-e---f~-----~ghIpG--AiniP~~--------~l~~~l~~l~~~~~~~IVlyC~~G~-rS~~aa~~ 79 (104)
T PRK10287 20 AEHWIDVRVPE-Q---YQ-----QEHVQG--AINIPLK--------EVKERIATAVPDKNDTVKLYCNAGR-QSGQAKEI 79 (104)
T ss_pred CCEEEECCCHH-H---Hh-----cCCCCc--cEECCHH--------HHHHHHHhcCCCCCCeEEEEeCCCh-HHHHHHHH
Confidence 37899999975 1 11 001112 2445542 3333333332234578999999996 87766555
Q ss_pred HHHhCCC
Q 002705 368 WRQYMAR 374 (890)
Q Consensus 368 lr~~lGv 374 (890)
+.. +|.
T Consensus 80 L~~-~G~ 85 (104)
T PRK10287 80 LSE-MGY 85 (104)
T ss_pred HHH-cCC
Confidence 543 454
No 116
>PRK06186 hypothetical protein; Validated
Probab=78.35 E-value=4.6 Score=43.71 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=30.9
Q ss_pred CCCccEEEEEcCchH-----HHHHHHhcCCCCCcEEEEeCC
Q 002705 753 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 753 ~e~~DlVIvLGGDGT-----lL~Aar~~~~~~~PILGIN~G 788 (890)
.+.+|-|++.||=|. .+.|++.....++|+|||-+|
T Consensus 51 l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClG 91 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGG 91 (229)
T ss_pred HhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechh
Confidence 356899999999775 678888888899999999998
No 117
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=78.07 E-value=4.1 Score=46.78 Aligned_cols=85 Identities=13% Similarity=0.177 Sum_probs=47.8
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcC-CcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002705 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSG-KVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (890)
Q Consensus 274 qpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~-GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLV 352 (890)
.++.+++..+.+.+=..|||.|+++ | +. ..... +...+|||+...... . .+...+....+.||+|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~-E---~~-----~ghI~~~~gAinIPl~~l~~~-~----~~~~~l~~~~~~~Ivv 337 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPH-E---VL-----LKDLPEGGASLKLPLSAITDD-A----DILHALSPIDGDNVVV 337 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHH-H---hh-----hccCCCCCccEeCcHHHhhcc-h----hhhhhccccCCCcEEE
Confidence 4577887776655534799999986 1 11 00111 124678887532110 0 1122222122349999
Q ss_pred eCccCCChHHHHHHHHHHhCCC
Q 002705 353 HSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 353 HCtAGKDRTGalvaLlr~~lGv 374 (890)
||.+|. |+..++..++. .|.
T Consensus 338 ~C~sG~-RS~~Aa~~L~~-~G~ 357 (370)
T PRK05600 338 YCASGI-RSADFIEKYSH-LGH 357 (370)
T ss_pred ECCCCh-hHHHHHHHHHH-cCC
Confidence 999998 98876655544 454
No 118
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=77.80 E-value=3.7 Score=42.40 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=44.2
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHHHH-
Q 002705 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVILH- 770 (890)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTlL~- 770 (890)
|+||-+.+. ....++++|.+ .|.++.+.+..... .+++ ...+|.||..||-|..-.
T Consensus 2 il~id~~ds----ft~~~~~~l~~-~g~~v~v~~~~~~~-----------------~~~~~~~~~d~iilsgGpg~p~~~ 59 (188)
T TIGR00566 2 VLMIDNYDS----FTYNLVQYFCE-LGAEVVVKRNDSLT-----------------LQEIEALLPLLIVISPGPCTPNEA 59 (188)
T ss_pred EEEEECCcC----HHHHHHHHHHH-cCCceEEEECCCCC-----------------HHHHHhcCCCEEEEcCCCCChhhc
Confidence 677776664 24456667665 36666654421100 0111 124788999999988633
Q ss_pred -----HHHhcCCCCCcEEEEeCC
Q 002705 771 -----ASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 771 -----Aar~~~~~~~PILGIN~G 788 (890)
..+.+ ...+|||||-+|
T Consensus 60 ~~~~~~i~~~-~~~~PvLGIC~G 81 (188)
T TIGR00566 60 GISLEAIRHF-AGKLPILGVCLG 81 (188)
T ss_pred chhHHHHHHh-ccCCCEEEECHH
Confidence 44444 458999999998
No 119
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=77.67 E-value=2.1 Score=49.76 Aligned_cols=54 Identities=28% Similarity=0.287 Sum_probs=40.7
Q ss_pred CccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC----------CCcccccCCCcccHHHHHHHHHc
Q 002705 755 RVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVIY 810 (890)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGIN~----------G~LGFLte~~~ed~~~~L~~Il~ 810 (890)
++|.+|+||||||+-.|.++.. +.++||+||-- =++||-|.++. +.+.++++..
T Consensus 112 ~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~~--~~~ai~~l~~ 180 (403)
T PRK06555 112 GVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQ--GARFFDNVIN 180 (403)
T ss_pred CCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHHH--HHHHHHHHHH
Confidence 7899999999999988877643 35899999943 37888886543 4566666654
No 120
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=77.48 E-value=8.2 Score=36.24 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=38.4
Q ss_pred cCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHH
Q 002705 286 KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMV 365 (890)
Q Consensus 286 lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHCtAGKDRTGalv 365 (890)
.--+.+||.|+.+ + +. .....| -+++|.. .+......+....+.||+++|..|. |+...+
T Consensus 16 ~~~~~lIDvR~~~-e---f~-----~ghIpg--Ainip~~--------~l~~~l~~~~~~~~~~vvlyC~~G~-rS~~aa 75 (101)
T TIGR02981 16 FAAEHWIDVRIPE-Q---YQ-----QEHIQG--AINIPLK--------EIKEHIATAVPDKNDTVKLYCNAGR-QSGMAK 75 (101)
T ss_pred ccCCEEEECCCHH-H---Hh-----cCCCCC--CEECCHH--------HHHHHHHHhCCCCCCeEEEEeCCCH-HHHHHH
Confidence 3567899999975 1 11 011122 2444442 3333333222234678999999998 888776
Q ss_pred HHHHHhCCC
Q 002705 366 SRWRQYMAR 374 (890)
Q Consensus 366 aLlr~~lGv 374 (890)
..+.. +|.
T Consensus 76 ~~L~~-~G~ 83 (101)
T TIGR02981 76 DILLD-MGY 83 (101)
T ss_pred HHHHH-cCC
Confidence 65544 454
No 121
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=77.41 E-value=5.2 Score=42.36 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=47.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH--
Q 002705 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL-- 769 (890)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL-- 769 (890)
+|+|+-..+. ....+.++|.+ .|+++.+-+.....+ .+..++....|.+|+.||.|..-
T Consensus 2 ~ilv~d~~~~----~~~~~~~~l~~-~G~~~~~~~~~~~~~--------------~~~~~~~~~~dgliisGGp~~~~~~ 62 (214)
T PRK07765 2 RILVVDNYDS----FVFNLVQYLGQ-LGVEAEVWRNDDPRL--------------ADEAAVAAQFDGVLLSPGPGTPERA 62 (214)
T ss_pred eEEEEECCCc----HHHHHHHHHHH-cCCcEEEEECCCcCH--------------HHHHHhhcCCCEEEECCCCCChhhc
Confidence 5777776642 23357788876 587766533211000 01112234689999999997643
Q ss_pred ----HHHHhcCCCCCcEEEEeCC
Q 002705 770 ----HASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 770 ----~Aar~~~~~~~PILGIN~G 788 (890)
..++.+....+|||||-+|
T Consensus 63 ~~~~~~i~~~~~~~~PiLGIC~G 85 (214)
T PRK07765 63 GASIDMVRACAAAGTPLLGVCLG 85 (214)
T ss_pred chHHHHHHHHHhCCCCEEEEccC
Confidence 3444445568999999998
No 122
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=76.33 E-value=2.3 Score=50.15 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=70.3
Q ss_pred hhcccCCCcEEEEEecCCh-h-HHHHHHHHHHHHhcCCC-eEEEEcCc-hhhhhh---------------cCCCCcccee
Q 002705 683 MLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEK-MNILVEPD-VHDIFA---------------RIPGFGFVQT 743 (890)
Q Consensus 683 ~L~W~~~pkkVlIV~K~~~-e-a~e~a~eL~~~L~~~~g-ieV~vE~~-va~~l~---------------~~p~~~~v~~ 743 (890)
.+-++....+|+||+--++ + .-..++.++..+...++ .+|+--.. ....+. ..++. ...+
T Consensus 80 ~~~f~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT-iLGT 158 (459)
T PTZ00286 80 HLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGT-ILGS 158 (459)
T ss_pred eEEEcccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCc-eecc
Confidence 3445555669999998886 4 44556777777754333 45654332 111110 01110 0000
Q ss_pred -eeccCcccc-----CCCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC----------CCcccccCCCcccHH
Q 002705 744 -FYLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYR 802 (890)
Q Consensus 744 -f~~~~~~el-----~e~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGIN~----------G~LGFLte~~~ed~~ 802 (890)
....+...+ .-++|.+++||||||+-.|..+.. +..+||+||-- =++||-|.++. ..
T Consensus 159 SR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~--~~ 236 (459)
T PTZ00286 159 SRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEE--AQ 236 (459)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHH--HH
Confidence 000011111 237899999999999988877544 35699999843 48899886543 45
Q ss_pred HHHHHHH
Q 002705 803 QDLRQVI 809 (890)
Q Consensus 803 ~~L~~Il 809 (890)
++++.+.
T Consensus 237 ~aI~~~~ 243 (459)
T PTZ00286 237 NAIRAAY 243 (459)
T ss_pred HHHHHHH
Confidence 5666554
No 123
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=76.00 E-value=2.6 Score=47.47 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=39.0
Q ss_pred CCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC----------CCcccccCCCcccHHHHHHHHH
Q 002705 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVI 809 (890)
Q Consensus 754 e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~----------G~LGFLte~~~ed~~~~L~~Il 809 (890)
.++|.+|+||||||+-.|.++. ..++||+||-- -++||-|.++. +.+.++.+.
T Consensus 91 ~~Id~Li~IGGdgs~~~a~~L~-e~~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~--~~~~i~~i~ 153 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAMRLT-EHGFPCVGLPGTIDNDIPGTDYTIGFDTALNT--VVEAIDRIR 153 (317)
T ss_pred cCCCEEEEECCchHHHHHHHHH-HcCCCEEEecccccCCCCCCccCCCHHHHHHH--HHHHHHHHH
Confidence 4789999999999987766544 35799999943 37999987554 445566554
No 124
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=75.23 E-value=7.7 Score=43.64 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=48.5
Q ss_pred EcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcE
Q 002705 271 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPL 350 (890)
Q Consensus 271 RSgqpT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PV 350 (890)
++..++++++..+.+.+=-+|||.|... | +. .-...| -+|+|+...... ++. +.+.+....++||
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~-E---~~-----~GhI~G--Ai~ip~~~~~~~-~~~---l~~~~~~~kdk~I 174 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDY-E---YE-----IGHFEN--AIEPDIETFREF-PPW---VEENLDPLKDKKV 174 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHH-H---Hh-----cCcCCC--CEeCCHHHhhhh-HHH---HHHhcCCCCcCeE
Confidence 3446788888776655435799999875 1 10 011122 245555421110 111 1112222356899
Q ss_pred EEeCccCCChHHHHHHHHHHhCCC
Q 002705 351 YLHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 351 LVHCtAGKDRTGalvaLlr~~lGv 374 (890)
++||++|. |....+.+++. .|.
T Consensus 175 vvyC~~G~-Rs~~aa~~L~~-~Gf 196 (314)
T PRK00142 175 VMYCTGGI-RCEKASAWMKH-EGF 196 (314)
T ss_pred EEECCCCc-HHHHHHHHHHH-cCC
Confidence 99999998 99876665544 454
No 125
>PRK14072 6-phosphofructokinase; Provisional
Probab=74.99 E-value=2.6 Score=49.14 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=38.9
Q ss_pred CCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC----------CCcccccCCCcccHHHHHHHH
Q 002705 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQV 808 (890)
Q Consensus 754 e~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGIN~----------G~LGFLte~~~ed~~~~L~~I 808 (890)
-++|.+|+||||||+=.|.++.. +.++|++||-- -++||-|..+. +.+.++++
T Consensus 102 ~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~~--i~~ai~~l 169 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKY--IATSVLEA 169 (416)
T ss_pred cCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHHH--HHHHHHHH
Confidence 37899999999999987776543 45699999843 57888886543 44556555
No 126
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=74.54 E-value=11 Score=42.89 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=20.0
Q ss_pred CCCcEEEeCc-cCCChHHHHHHHHHHhCCC
Q 002705 346 SKKPLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 346 ~~~PVLVHCt-AGKDRTGalvaLlr~~lGv 374 (890)
.+.+|+++|. .|. |++.++.++.. +|.
T Consensus 87 ~~~~ivvyC~rgG~-RS~~aa~~L~~-~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGL-RSGSVQQWLKE-AGI 114 (345)
T ss_pred CCCeEEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 5779999995 566 99987766654 575
No 127
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=74.53 E-value=4.5 Score=41.65 Aligned_cols=73 Identities=12% Similarity=0.206 Sum_probs=44.6
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH---
Q 002705 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI--- 768 (890)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl--- 768 (890)
|+||-+.+. ....|+++|.+ .|.+|.+-+... .+.+++ ...+|.||+.||.|+.
T Consensus 2 il~id~~ds----f~~nl~~~l~~-~~~~~~v~~~~~-----------------~~~~~~~~~~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 2 LLLIDNYDS----FTYNLYQYFCE-LGTEVMVKRNDE-----------------LQLTDIEQLAPSHLVISPGPCTPNEA 59 (191)
T ss_pred EEEEECCCc----hHHHHHHHHHH-CCCcEEEEeCCC-----------------CCHHHHHhcCCCeEEEcCCCCChHhC
Confidence 677777664 24456667765 466665543210 011122 1257999999999984
Q ss_pred ---HHHHHhcCCCCCcEEEEeCC
Q 002705 769 ---LHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 769 ---L~Aar~~~~~~~PILGIN~G 788 (890)
+...+.+ ...+|||||-+|
T Consensus 60 ~~~~~~i~~~-~~~~PiLGIC~G 81 (191)
T PRK06774 60 GISLAVIRHF-ADKLPILGVCLG 81 (191)
T ss_pred CCchHHHHHh-cCCCCEEEECHH
Confidence 3334444 358999999988
No 128
>CHL00101 trpG anthranilate synthase component 2
Probab=74.50 E-value=5.5 Score=41.15 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=43.8
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHHHH-
Q 002705 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVILH- 770 (890)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTlL~- 770 (890)
|+||-..+.- ...|+++|.+ .|+++.+-+... .+..++ ...+|.||+.||.|..-.
T Consensus 2 iliid~~dsf----t~~l~~~l~~-~g~~~~v~~~~~-----------------~~~~~~~~~~~dgiiisgGpg~~~~~ 59 (190)
T CHL00101 2 ILIIDNYDSF----TYNLVQSLGE-LNSDVLVCRNDE-----------------IDLSKIKNLNIRHIIISPGPGHPRDS 59 (190)
T ss_pred EEEEECCCch----HHHHHHHHHh-cCCCEEEEECCC-----------------CCHHHHhhCCCCEEEECCCCCChHHC
Confidence 5666666542 2346667766 477766533210 011111 235899999999998633
Q ss_pred ----HHHhcCCCCCcEEEEeCC
Q 002705 771 ----ASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 771 ----Aar~~~~~~~PILGIN~G 788 (890)
.........+|||||-+|
T Consensus 60 ~~~~~i~~~~~~~~PiLGIClG 81 (190)
T CHL00101 60 GISLDVISSYAPYIPILGVCLG 81 (190)
T ss_pred cchHHHHHHhcCCCcEEEEchh
Confidence 222223468999999998
No 129
>PRK05320 rhodanese superfamily protein; Provisional
Probab=74.07 E-value=7.5 Score=42.51 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=82.9
Q ss_pred CCCcccchhhhhhhhhHHHHHHHhccCCCCc-chhhH-HHHHHHHHhhhccCCCCCCCCCCC---CcCCCCceeEEecCC
Q 002705 182 LPPLAIFRSEMKRCCESMHIALENYLTPEDV-RSLDV-WRKLQRLKNVCYDSGFPRGDDYPI---HTLFANWSPVYLSNS 256 (890)
Q Consensus 182 ~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~~-~~l~v-~~kLqr~~~~~~d~g~pr~~g~p~---~~~i~Nw~~V~ls~~ 256 (890)
+++..-.|..+..+|..+.+..-=|+++++= .++.. ..++..+...... .|+.++... ...-+-|...... .
T Consensus 14 i~~~~~~~~~~~~~~~~~~~~G~i~ia~eGiN~t~~g~~~~id~~~~~l~~--~~~~~dl~~k~~~~~~~pF~~l~vk-~ 90 (257)
T PRK05320 14 LDDPETLRPLVLARCEALGLKGTILLAPEGINLFLAGTREAIDAFYAWLRA--DARFADLQVKESLSDSQPFRRMLVK-L 90 (257)
T ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEEcCCCceEEEEeeHHHHHHHHHHHhh--CCCccCceeecccccCCCchhccch-h
Confidence 4445667888888888887777778888861 11111 2233333322211 233333222 0111123221000 0
Q ss_pred Cccccc---CCCcccEEEcCCCCHhhHHHHHHcCC------cEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCC
Q 002705 257 KDDIAS---KDSEVTFCRGGQVTEEGLKWLMEKGY------KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR 327 (890)
Q Consensus 257 ~~~~~~---~~~e~~LYRSgqpT~eDl~~L~~lGI------KTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~ 327 (890)
++.+.. ...++..-+...++++++..+.+.+- -.|||.|+.. |-. .-...| -+++|+...
T Consensus 91 k~eiv~~g~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~-E~~--------~Ghi~G--AiniPl~~f 159 (257)
T PRK05320 91 KREIITMKRPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAF-EVD--------VGTFDG--ALDYRIDKF 159 (257)
T ss_pred hhHHhhcCCcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHH-HHc--------cCccCC--CEeCChhHh
Confidence 100000 00011111334678888887766542 3699999985 111 001122 356666421
Q ss_pred CCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhCCC
Q 002705 328 TAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 328 ~~ps~E~v~af~~iL~d~~~~PVLVHCtAGKDRTGalvaLlr~~lGv 374 (890)
.. .++.+... .....++||+++|+.|. |+-.++..++. .|.
T Consensus 160 ~~-~~~~l~~~---~~~~kdk~IvvyC~~G~-Rs~~Aa~~L~~-~Gf 200 (257)
T PRK05320 160 TE-FPEALAAH---RADLAGKTVVSFCTGGI-RCEKAAIHMQE-VGI 200 (257)
T ss_pred hh-hHHHHHhh---hhhcCCCeEEEECCCCH-HHHHHHHHHHH-cCC
Confidence 11 11112211 11124689999999998 98877766654 454
No 130
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=74.04 E-value=2.9 Score=49.19 Aligned_cols=124 Identities=19% Similarity=0.231 Sum_probs=72.0
Q ss_pred hhcccCCCcEEEEEecCCh-h-HHHHHHHHHHHHhcCCC-eEEEEcCc-hhhhhh------------------cCCCCcc
Q 002705 683 MLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEK-MNILVEPD-VHDIFA------------------RIPGFGF 740 (890)
Q Consensus 683 ~L~W~~~pkkVlIV~K~~~-e-a~e~a~eL~~~L~~~~g-ieV~vE~~-va~~l~------------------~~p~~~~ 740 (890)
.+-++....+++|++--++ + .-..++.++..+...++ .+|+--.. ....+. ..++. .
T Consensus 73 ~i~f~p~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGT-i 151 (443)
T PRK06830 73 KIYFDPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGT-I 151 (443)
T ss_pred eeEEcCcccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCc-c
Confidence 4455556679999998886 4 44566777777655445 56664433 222211 00110 0
Q ss_pred cee-eeccCcccc-----CCCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC----------CCcccccCCCcc
Q 002705 741 VQT-FYLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFE 799 (890)
Q Consensus 741 v~~-f~~~~~~el-----~e~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGIN~----------G~LGFLte~~~e 799 (890)
..+ ....+.+.+ ..++|.+++||||||+=.|.++.. +..+||+||-- =++||-|.++.
T Consensus 152 LGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~- 230 (443)
T PRK06830 152 LGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEK- 230 (443)
T ss_pred ccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHH-
Confidence 000 000011111 247899999999999987776543 35699999943 47888886543
Q ss_pred cHHHHHHHHH
Q 002705 800 DYRQDLRQVI 809 (890)
Q Consensus 800 d~~~~L~~Il 809 (890)
..++++.+.
T Consensus 231 -a~~aI~~~~ 239 (443)
T PRK06830 231 -ATEAIRCAH 239 (443)
T ss_pred -HHHHHHHHH
Confidence 455555553
No 131
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=73.32 E-value=6.6 Score=35.75 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=43.2
Q ss_pred CCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCC--CCHHHHHHHHHHHhcCCCCcE
Q 002705 275 VTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTA--PTMEQVEKFASLVSNSSKKPL 350 (890)
Q Consensus 275 pT~eDl~~L~~lG--IKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~--ps~E~v~af~~iL~d~~~~PV 350 (890)
++++++..+.+.+ --.|||+|+.. + |. .-...|. +++|...... .....+.. ...+....+.||
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~-e---~~-----~ghIpgA--~~ip~~~~~~~~~~~~~~~~-~~~~~~~~~~~v 68 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSP-D---FR-----RGHIEGS--INIPFSSVFLKEGELEQLPT-VPRLENYKGKII 68 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHH-H---Hh-----CCccCCC--EeCCHHHhcccccccccccc-hHHHHhhcCCeE
Confidence 3567777776553 23789999864 1 11 0112232 4555532110 00011100 111211236799
Q ss_pred EEeCccCCChHHHHHHHHHHhCCC
Q 002705 351 YLHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 351 LVHCtAGKDRTGalvaLlr~~lGv 374 (890)
+++|..|. |+..++..+. .+|.
T Consensus 69 v~~c~~g~-~s~~~a~~L~-~~G~ 90 (105)
T cd01525 69 VIVSHSHK-HAALFAAFLV-KCGV 90 (105)
T ss_pred EEEeCCCc-cHHHHHHHHH-HcCC
Confidence 99999998 8776555443 3565
No 132
>PLN02564 6-phosphofructokinase
Probab=72.47 E-value=3.3 Score=49.16 Aligned_cols=124 Identities=19% Similarity=0.211 Sum_probs=69.5
Q ss_pred hhcccCCCcEEEEEecCCh-h-HHHHHHHHHHHHhcCCC-eEEEEcCc-hhhhh---------------hcCCCCcccee
Q 002705 683 MLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEK-MNILVEPD-VHDIF---------------ARIPGFGFVQT 743 (890)
Q Consensus 683 ~L~W~~~pkkVlIV~K~~~-e-a~e~a~eL~~~L~~~~g-ieV~vE~~-va~~l---------------~~~p~~~~v~~ 743 (890)
.+-++....+|+|++--++ + .-..++.++..+....+ .+|+--.. ....+ ...++. ...+
T Consensus 80 ~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT-iLGT 158 (484)
T PLN02564 80 KVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGT-ILGT 158 (484)
T ss_pred eEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCc-eecc
Confidence 4455666679999998886 3 55556677766654334 46654332 11111 001110 0000
Q ss_pred -eeccCcccc-----CCCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC----------CCcccccCCCcccHH
Q 002705 744 -FYLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYR 802 (890)
Q Consensus 744 -f~~~~~~el-----~e~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGIN~----------G~LGFLte~~~ed~~ 802 (890)
....+...+ .-++|.+|+||||||+-.|..+.. +..++|+||-- -++||-|.++ .+.
T Consensus 159 sR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~--~~~ 236 (484)
T PLN02564 159 SRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQ 236 (484)
T ss_pred CCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHH--HHH
Confidence 000011111 237899999999999988877644 34466999843 3788888654 355
Q ss_pred HHHHHHH
Q 002705 803 QDLRQVI 809 (890)
Q Consensus 803 ~~L~~Il 809 (890)
++++.+.
T Consensus 237 ~aI~~i~ 243 (484)
T PLN02564 237 RAINAAH 243 (484)
T ss_pred HHHHHHH
Confidence 6666664
No 133
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=71.20 E-value=3.6 Score=47.04 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=71.3
Q ss_pred CCcEEEEEecCCh-h-HHHHHHHHHHHHhcCCCeEEEEcCc-hhhhhhc---------------CCCCc----cceeeec
Q 002705 689 TPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPD-VHDIFAR---------------IPGFG----FVQTFYL 746 (890)
Q Consensus 689 ~pkkVlIV~K~~~-e-a~e~a~eL~~~L~~~~gieV~vE~~-va~~l~~---------------~p~~~----~v~~f~~ 746 (890)
++++|+|++--++ + .-..++-+++.+.. .+++|+--.+ ....+.. ..++. ....|..
T Consensus 1 ~~kkIaIlTSGGdaPGmNa~Iravvr~a~~-~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~ 79 (347)
T COG0205 1 MMKKIAILTSGGDAPGMNAVIRAVVRTAIK-EGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347)
T ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHH-cCCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCccc
Confidence 3679999999887 4 44556778888776 4888875433 1111100 00000 0000110
Q ss_pred cCc-----ccc-CCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC----------CCcccccCCCcccHHHHHHHHH
Q 002705 747 QDT-----SDL-HERVDFVACLGGDGVILHASNLFRGAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVI 809 (890)
Q Consensus 747 ~~~-----~el-~e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~----------G~LGFLte~~~ed~~~~L~~Il 809 (890)
.+. ..+ ...+|.+|+||||||.--|..+...-.+|++||-- =++||.|..+. +.++++.+-
T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~~--~~eaid~l~ 156 (347)
T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALET--AVEAIDNLR 156 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHHH--HHHHHHHHH
Confidence 000 001 23789999999999998887776655699999843 38999997654 445555554
No 134
>PRK05670 anthranilate synthase component II; Provisional
Probab=70.16 E-value=7.9 Score=39.78 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=43.5
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH---
Q 002705 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL--- 769 (890)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL--- 769 (890)
|+|+-..+ +....+.+||.+ .|+++.+-+...... .+.+. .++|.||+.||-|+.-
T Consensus 2 iliid~~d----~f~~~i~~~l~~-~g~~~~v~~~~~~~~--------------~~~~~--~~~dglIlsgGpg~~~d~~ 60 (189)
T PRK05670 2 ILLIDNYD----SFTYNLVQYLGE-LGAEVVVYRNDEITL--------------EEIEA--LNPDAIVLSPGPGTPAEAG 60 (189)
T ss_pred EEEEECCC----chHHHHHHHHHH-CCCcEEEEECCCCCH--------------HHHHh--CCCCEEEEcCCCCChHHcc
Confidence 55555553 235667788876 587776543211000 00111 2379999999998852
Q ss_pred ---HHHHhcCCCCCcEEEEeCC
Q 002705 770 ---HASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 770 ---~Aar~~~~~~~PILGIN~G 788 (890)
...+.+ ...+|||||-+|
T Consensus 61 ~~~~~l~~~-~~~~PvLGIClG 81 (189)
T PRK05670 61 ISLELIREF-AGKVPILGVCLG 81 (189)
T ss_pred hHHHHHHHh-cCCCCEEEECHH
Confidence 223333 246899999998
No 135
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=69.22 E-value=9 Score=34.57 Aligned_cols=29 Identities=3% Similarity=-0.079 Sum_probs=20.1
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 002705 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (890)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGalvaLlr~~lGvs 375 (890)
..+.+|+++|..|. |+..++..+ ...|.+
T Consensus 54 ~~~~~ivv~c~~g~-~s~~~~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGSL-LARFAAQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCChH-HHHHHHHHH-HHcCCC
Confidence 45679999999887 877655544 445653
No 136
>PLN02884 6-phosphofructokinase
Probab=68.86 E-value=3.7 Score=47.89 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=73.3
Q ss_pred hhcccCCCcEEEEEecCCh-h-HHHHHHHHHHHHhcCCCe-EEEEcCc-hhhhhhc-----------------CCCCccc
Q 002705 683 MLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEKM-NILVEPD-VHDIFAR-----------------IPGFGFV 741 (890)
Q Consensus 683 ~L~W~~~pkkVlIV~K~~~-e-a~e~a~eL~~~L~~~~gi-eV~vE~~-va~~l~~-----------------~p~~~~v 741 (890)
.+-|+....+|+|++--++ + .-..++.++..+.. +|+ +|+--.+ ....+.. .++. ..
T Consensus 46 ~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~-~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt-~L 123 (411)
T PLN02884 46 KIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI-YGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGS-LL 123 (411)
T ss_pred eEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH-cCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCc-ee
Confidence 4556666779999998886 3 55667788888765 477 6774332 2211111 0110 00
Q ss_pred ee-eeccCccc----c-CCCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC----------CCcccccCCCccc
Q 002705 742 QT-FYLQDTSD----L-HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFED 800 (890)
Q Consensus 742 ~~-f~~~~~~e----l-~e~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGIN~----------G~LGFLte~~~ed 800 (890)
.+ .......+ + ..++|.+|+||||||+-.|.++.. +..+||+||-- -++||-|.++.
T Consensus 124 GtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~-- 201 (411)
T PLN02884 124 GVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEE-- 201 (411)
T ss_pred ccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHH--
Confidence 00 00000111 1 247899999999999987766543 24599999933 37889887554
Q ss_pred HHHHHHHHH
Q 002705 801 YRQDLRQVI 809 (890)
Q Consensus 801 ~~~~L~~Il 809 (890)
+.++++++.
T Consensus 202 ~~~ai~~l~ 210 (411)
T PLN02884 202 AQRAINSAY 210 (411)
T ss_pred HHHHHHHHH
Confidence 556666654
No 137
>PRK03202 6-phosphofructokinase; Provisional
Probab=68.61 E-value=4.8 Score=45.43 Aligned_cols=53 Identities=26% Similarity=0.375 Sum_probs=39.8
Q ss_pred CCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC-------C---CcccccCCCcccHHHHHHHHH
Q 002705 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (890)
Q Consensus 754 e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~-------G---~LGFLte~~~ed~~~~L~~Il 809 (890)
.++|.+|++|||||+-.+.++. ..++||+||-. | ++||-|..+. +.+.++++.
T Consensus 92 ~~Id~Li~IGGd~s~~~a~~L~-e~~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~--~~~~i~~l~ 154 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAKRLT-EHGIPVIGLPGTIDNDIAGTDYTIGFDTALNT--AVEAIDRLR 154 (320)
T ss_pred cCCCEEEEeCChHHHHHHHHHH-hcCCcEEEecccccCCCCCCccCcCHHHHHHH--HHHHHHHHH
Confidence 3789999999999998776655 46899999944 3 8888886543 455566554
No 138
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=68.41 E-value=13 Score=44.79 Aligned_cols=66 Identities=29% Similarity=0.377 Sum_probs=41.3
Q ss_pred EEEEcCchHH---HHHHHhcCCC-CCcE--EEEeCC-----CcccccCCCcccHHHHHHHHHcCCCCCCcceeeeeeEEE
Q 002705 759 VACLGGDGVI---LHASNLFRGA-VPPV--ISFNLG-----SLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLC 827 (890)
Q Consensus 759 VIvLGGDGTl---L~Aar~~~~~-~~PI--LGIN~G-----~LGFLte~~~ed~~~~L~~Il~G~y~~~g~~Ie~R~rLe 827 (890)
|++-|||||+ |.+...+.-. .||+ |...+| .||.=--++-+-+.+.|.++.+|. +.-..|.+|.
T Consensus 420 ILaCGGDGTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gt-----vVqLDRW~lh 494 (1004)
T KOG0782|consen 420 ILACGGDGTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGT-----VVQLDRWRLH 494 (1004)
T ss_pred EEEecCCCceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCc-----EEeeeeeeec
Confidence 5788999995 7777666533 3443 333333 233333344445778888999998 2345688888
Q ss_pred EE
Q 002705 828 CE 829 (890)
Q Consensus 828 ~~ 829 (890)
++
T Consensus 495 vE 496 (1004)
T KOG0782|consen 495 VE 496 (1004)
T ss_pred cc
Confidence 76
No 139
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=68.41 E-value=36 Score=31.62 Aligned_cols=91 Identities=12% Similarity=0.201 Sum_probs=57.5
Q ss_pred cEEEEEecCChhHHH-HHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002705 691 RTVLVLKKPGPALME-EAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (890)
Q Consensus 691 kkVlIV~K~~~ea~e-~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL 769 (890)
++|+++.-.+-.... .+.++.++|.+ +|+++-++..-...+ +...+++|+||+-. + |
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~~~~e~-----------------~~~~~~~D~iv~t~-~---~ 60 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVNEI-----------------ETYMDGVHLICTTA-R---V 60 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecHHHH-----------------hhhcCCCCEEEECC-c---c
Confidence 479999999874333 46788899887 588876654211111 11225679875532 1 1
Q ss_pred HHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHHHcC
Q 002705 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYG 811 (890)
Q Consensus 770 ~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~Il~G 811 (890)
...+ .++|++-+ ++||+.++.+++++.|..++.|
T Consensus 61 --~~~~--~~ip~~~~----~~llt~~~~~~~~e~i~~~l~~ 94 (94)
T PRK10310 61 --DRSF--GDIPLVHG----MPFVSGVGIEALQNKILTILQG 94 (94)
T ss_pred --cccc--CCCCEEEE----eecccccCHHHHHHHHHHHHcC
Confidence 1111 15775422 5799999999999999888765
No 140
>PRK07053 glutamine amidotransferase; Provisional
Probab=68.03 E-value=13 Score=40.07 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=46.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH--
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV-- 767 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGT-- 767 (890)
.++|+||.+...+-. -.+.++|.+ .|+.+.+-......+ ...+ ..+.|.+|+.||-..
T Consensus 2 m~~ilviqh~~~e~~---g~i~~~L~~-~g~~~~v~~~~~~~~---------------~~~~-~~~~d~lii~Ggp~~~~ 61 (234)
T PRK07053 2 MKTAVAIRHVAFEDL---GSFEQVLGA-RGYRVRYVDVGVDDL---------------ETLD-ALEPDLLVVLGGPIGVY 61 (234)
T ss_pred CceEEEEECCCCCCC---hHHHHHHHH-CCCeEEEEecCCCcc---------------CCCC-ccCCCEEEECCCCCCCC
Confidence 467999998765322 226677765 476554321110000 0112 235899999997532
Q ss_pred ----------HHHHHHhcCCCCCcEEEEeCCC
Q 002705 768 ----------ILHASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 768 ----------lL~Aar~~~~~~~PILGIN~G~ 789 (890)
++...+.+...++|||||-+|+
T Consensus 62 d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~ 93 (234)
T PRK07053 62 DDELYPFLAPEIALLRQRLAAGLPTLGICLGA 93 (234)
T ss_pred CCCcCCcHHHHHHHHHHHHHCCCCEEEECccH
Confidence 2344444445689999999983
No 141
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=67.97 E-value=2.3 Score=46.99 Aligned_cols=116 Identities=18% Similarity=0.300 Sum_probs=66.1
Q ss_pred cEEEEEecCCh-h-HHHHHHHHHHHHhcCCCeEEEEcCc-hhhhhh---------------cCCCC----ccceeeecc-
Q 002705 691 RTVLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPD-VHDIFA---------------RIPGF----GFVQTFYLQ- 747 (890)
Q Consensus 691 kkVlIV~K~~~-e-a~e~a~eL~~~L~~~~gieV~vE~~-va~~l~---------------~~p~~----~~v~~f~~~- 747 (890)
|+|+|+.--++ + .-..+..+++.... +|++|+--.+ ....+. ..++. .....+...
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~-~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~~ 79 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR-RGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDPE 79 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH-TTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSHH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh-cCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccchh
Confidence 68999998776 3 45556778877765 5888886433 111111 01111 000001000
Q ss_pred C----cccc-CCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC-------C---CcccccCCCcccHHHHHHHHH
Q 002705 748 D----TSDL-HERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (890)
Q Consensus 748 ~----~~el-~e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~-------G---~LGFLte~~~ed~~~~L~~Il 809 (890)
. .+.+ ..++|.+|++|||||+-.|..+.....+||+||-. | ++||-|..+. +.+.++.+.
T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPkTIDNDi~gtd~siGf~TA~~~--~~~~i~~i~ 154 (282)
T PF00365_consen 80 GRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPKTIDNDIPGTDYSIGFDTAVNY--IAEAIDNIK 154 (282)
T ss_dssp HHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEEETTSSCTTSSS-BTHHHHHHH--HHHHHHHHH
T ss_pred hhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCceEEEEEeccccCCcCCCCCCcccCchhHH--HHHHHHHHH
Confidence 0 0001 24789999999999976665544345699999943 3 7888886553 556666664
No 142
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=67.75 E-value=26 Score=30.38 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=19.0
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 002705 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (890)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGalvaLlr~~lGvs 375 (890)
..+.+|+|+|..|. |+-.++..+.. +|..
T Consensus 54 ~~~~~iv~~c~~g~-~a~~~~~~l~~-~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSAKAAWLLRE-LGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HHHHHHHHHHH-cCCC
Confidence 45689999997777 76555444433 4543
No 143
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=66.67 E-value=15 Score=41.92 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=51.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
.++++||+...-.....+.++.+.|.+ .|+++.+-..+.. .|....+.. -.... ..++|+||.||| |+.
T Consensus 23 ~~r~livt~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~~----~p~~~~v~~----~~~~~~~~~~D~IIaiGG-GS~ 92 (375)
T cd08194 23 GKRPLIVTDKVMVKLGLVDKLTDSLKK-EGIESAIFDDVVS----EPTDESVEE----GVKLAKEGGCDVIIALGG-GSP 92 (375)
T ss_pred CCeEEEEcCcchhhcchHHHHHHHHHH-CCCeEEEECCCCC----CcCHHHHHH----HHHHHHhcCCCEEEEeCC-chH
Confidence 478999986543323366788888876 4777654322211 111100000 00011 347899999999 788
Q ss_pred HHHHHhcC-------------------CCCCcEEEEeC
Q 002705 769 LHASNLFR-------------------GAVPPVISFNL 787 (890)
Q Consensus 769 L~Aar~~~-------------------~~~~PILGIN~ 787 (890)
+-+++.+. ...+|++.|.+
T Consensus 93 ~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 93 IDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred HHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 88887643 24578888876
No 144
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=66.32 E-value=37 Score=34.51 Aligned_cols=97 Identities=9% Similarity=0.110 Sum_probs=46.4
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCc-chhhhh----HhhhhcCCcEEEEEec---CCCCCCCHHHHHHHH-HHHhc
Q 002705 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDN-FYEAAI----DDAILSGKVELIKIPV---EVRTAPTMEQVEKFA-SLVSN 344 (890)
Q Consensus 274 qpT~eDl~~L~~lGIKTVIDLRse~~ee~-~~~a~e----~~~~e~~GI~yVhIPV---~d~~~ps~E~v~af~-~iL~d 344 (890)
.++.+++..+.+.+=..|||.|+.+ +.+ .+.... ...-...|- +++|. .....+..+.+.+.+ +....
T Consensus 37 ~vs~~el~~~l~~~~~~lIDVR~~~-~~~~e~~~G~~~~~~~~~HIPGA--v~ip~~~~~~l~~~~~~~~~~~l~~~~~~ 113 (162)
T TIGR03865 37 VLDTEAAQALLARGPVALIDVYPRP-PKPKNLLEGTVWRDEPRLNIPGS--LWLPNTGYGNLAPAWQAYFRRGLERATGG 113 (162)
T ss_pred ccCHHHHHHHHhCCCcEEEECCCCc-cccccccccceeccccCCCCCCc--EEecccCCCCCCCchhHHHHHHHHHhcCC
Confidence 5688888877766545699999754 110 000000 000012332 33442 211222222222222 11111
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhCCC
Q 002705 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGalvaLlr~~lGv 374 (890)
..+.||+++|..|.-|+...+.++. .+|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~-~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRAL-AYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHH-hcCC
Confidence 3568999999998756665444443 3564
No 145
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=65.46 E-value=11 Score=38.96 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=44.5
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHHH--
Q 002705 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL-- 769 (890)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTlL-- 769 (890)
|+||-+.+. ....+++||.+ .|+.+.+-+... .+...+ ..+.|.+|+.||.|..-
T Consensus 2 il~id~~ds----ft~~~~~~l~~-~g~~~~~~~~~~-----------------~~~~~~~~~~~~~iilsgGp~~~~~~ 59 (193)
T PRK08857 2 LLMIDNYDS----FTYNLYQYFCE-LGAQVKVVRNDE-----------------IDIDGIEALNPTHLVISPGPCTPNEA 59 (193)
T ss_pred EEEEECCCC----cHHHHHHHHHH-CCCcEEEEECCC-----------------CCHHHHhhCCCCEEEEeCCCCChHHC
Confidence 677777664 24457788876 477765433110 000111 12468999999997743
Q ss_pred ----HHHHhcCCCCCcEEEEeCC
Q 002705 770 ----HASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 770 ----~Aar~~~~~~~PILGIN~G 788 (890)
...+.+ ...+|||||-+|
T Consensus 60 ~~~~~~i~~~-~~~~PiLGIClG 81 (193)
T PRK08857 60 GISLQAIEHF-AGKLPILGVCLG 81 (193)
T ss_pred cchHHHHHHh-cCCCCEEEEcHH
Confidence 333443 468999999998
No 146
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=65.14 E-value=4.8 Score=45.66 Aligned_cols=55 Identities=24% Similarity=0.269 Sum_probs=40.6
Q ss_pred CCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC-------C---CcccccCCCcccHHHHHHHHHc
Q 002705 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVIY 810 (890)
Q Consensus 754 e~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGIN~-------G---~LGFLte~~~ed~~~~L~~Il~ 810 (890)
.++|.+|+||||||+-.|..+.. ..++||+||-. | ++||-|..+. +.+.++++..
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~--~~~~i~~l~~ 160 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKT--IVEAIDRIRD 160 (338)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHH--HHHHHHHHHH
Confidence 47899999999999987766543 24899999944 2 7888886543 5666777654
No 147
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=64.23 E-value=36 Score=30.57 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=18.1
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhCCC
Q 002705 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGalvaLlr~~lGv 374 (890)
..+.||+|+|..|. |+-.++..+ ..+|.
T Consensus 59 ~~~~~ivv~c~~g~-~s~~~~~~l-~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASGW-RSALAGKTL-QDMGL 86 (103)
T ss_pred CCCCeEEEEcCCCC-cHHHHHHHH-HHcCh
Confidence 34679999999886 765443333 33564
No 148
>PRK06490 glutamine amidotransferase; Provisional
Probab=63.21 E-value=14 Score=39.99 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=45.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHH-
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI- 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTl- 768 (890)
.++|+||.+...+. ...+.+||.+ .|.++.+-....+. ...++ ..++|.+|+.||=++.
T Consensus 7 ~~~vlvi~h~~~~~---~g~l~~~l~~-~g~~~~v~~~~~~~---------------~~p~~-l~~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 7 KRPVLIVLHQERST---PGRVGQLLQE-RGYPLDIRRPRLGD---------------PLPDT-LEDHAGAVIFGGPMSAN 66 (239)
T ss_pred CceEEEEecCCCCC---ChHHHHHHHH-CCCceEEEeccCCC---------------CCCCc-ccccCEEEEECCCCCCC
Confidence 45899998877532 2235666665 46555432111000 00112 2458999999998753
Q ss_pred -----H----HHHHhcCCCCCcEEEEeCC
Q 002705 769 -----L----HASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 769 -----L----~Aar~~~~~~~PILGIN~G 788 (890)
+ ...+.+....+|||||-+|
T Consensus 67 d~~~wi~~~~~~i~~~~~~~~PvLGIC~G 95 (239)
T PRK06490 67 DPDDFIRREIDWISVPLKENKPFLGICLG 95 (239)
T ss_pred CCchHHHHHHHHHHHHHHCCCCEEEECHh
Confidence 2 2333334568999999998
No 149
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=62.54 E-value=24 Score=41.90 Aligned_cols=72 Identities=8% Similarity=0.223 Sum_probs=45.4
Q ss_pred cCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHH------HHHHHHHH-HhcCCCCcEEEeCccCC
Q 002705 286 KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTME------QVEKFASL-VSNSSKKPLYLHSKEGV 358 (890)
Q Consensus 286 lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E------~v~af~~i-L~d~~~~PVLVHCtAGK 358 (890)
..+..||++........ .......++|+|+......+.. .+..|+.. +....+++|||+|..||
T Consensus 317 ~~~~~vI~~s~~~~~~~---------~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGk 387 (451)
T PF04179_consen 317 SEFDCVINCSESPTPKE---------SWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGK 387 (451)
T ss_pred CCcCEEEEcCCCccccc---------ccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcc
Confidence 47889999976541111 1235678999999865554432 23334433 22224789999999999
Q ss_pred ChHHHHHH
Q 002705 359 WRTYAMVS 366 (890)
Q Consensus 359 DRTGalva 366 (890)
|..-.+++
T Consensus 388 DlSVgVaL 395 (451)
T PF04179_consen 388 DLSVGVAL 395 (451)
T ss_pred hHHHHHHH
Confidence 99874443
No 150
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=61.16 E-value=34 Score=32.01 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=38.8
Q ss_pred CCHhhHHHHHHcC------CcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCC
Q 002705 275 VTEEGLKWLMEKG------YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK 348 (890)
Q Consensus 275 pT~eDl~~L~~lG------IKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~ 348 (890)
++++++..+.+.+ =-.|||.|+.+ +. .....| -+++|+.... +.+......+......
T Consensus 4 is~~el~~~l~~~~~~~~~~~~iiDvR~~e-----f~-----~ghipg--Ai~ip~~~~~----~~~~~~~~~~~~~~~~ 67 (113)
T cd01443 4 ISPEELVALLENSDSNAGKDFVVVDLRRDD-----YE-----GGHIKG--SINLPAQSCY----QTLPQVYALFSLAGVK 67 (113)
T ss_pred cCHHHHHHHHhCCccccCCcEEEEECCchh-----cC-----CCcccC--ceecchhHHH----HHHHHHHHHhhhcCCC
Confidence 4677787776665 23699999752 11 011122 3566765211 1111222212123456
Q ss_pred cEEEeCccCCChHHHHH
Q 002705 349 PLYLHSKEGVWRTYAMV 365 (890)
Q Consensus 349 PVLVHCtAGKDRTGalv 365 (890)
+|++||..|-.|+-..+
T Consensus 68 ~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 68 LAIFYCGSSQGRGPRAA 84 (113)
T ss_pred EEEEECCCCCcccHHHH
Confidence 89999997533755433
No 151
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=60.98 E-value=19 Score=41.18 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=43.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
.++++||....-.......++.+.|.+ .++++.+-..+.. .|....+... .... ..++|+||.||| |++
T Consensus 28 ~~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~ 97 (377)
T cd08176 28 FKKALIVTDKGLVKIGVVEKVTDVLDE-AGIDYVIYDGVKP----NPTITNVKDG----LAVFKKEGCDFIISIGG-GSP 97 (377)
T ss_pred CCeEEEECCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCCC----CCCHHHHHHH----HHHHHhcCCCEEEEeCC-cHH
Confidence 378999986543223467788888876 4776654322210 1111000000 0011 247899999999 888
Q ss_pred HHHHHhc
Q 002705 769 LHASNLF 775 (890)
Q Consensus 769 L~Aar~~ 775 (890)
+-+++.+
T Consensus 98 iD~aK~i 104 (377)
T cd08176 98 HDCAKAI 104 (377)
T ss_pred HHHHHHH
Confidence 8887754
No 152
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=60.49 E-value=22 Score=39.85 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhCCC
Q 002705 330 PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 330 ps~E~v~af~~iL~d~~~~PVLVHCtAGKDRTGalvaLlr~~lGv 374 (890)
.+.+++++.+.-..-..+.||+++|..|. |...++..+. .+|.
T Consensus 252 ~~~~el~~~~~~~gi~~~~~iv~yC~sG~-~A~~~~~~L~-~~G~ 294 (320)
T PLN02723 252 LPAEELKKRFEQEGISLDSPIVASCGTGV-TACILALGLH-RLGK 294 (320)
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCC
Confidence 45666666554321235679999999987 7765555554 4674
No 153
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=60.43 E-value=13 Score=35.70 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHHHHcCCcEEEEcCCCcc-cCcchh-hhhHhhhhcCCcEEEEEecCC
Q 002705 280 LKWLMEKGYKTIVDIRAERV-KDNFYE-AAIDDAILSGKVELIKIPVEV 326 (890)
Q Consensus 280 l~~L~~lGIKTVIDLRse~~-ee~~~~-a~e~~~~e~~GI~yVhIPV~d 326 (890)
+..|++.||+.|||.|.-.. ..+++. ......+...||.|+|+|-..
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg 54 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELG 54 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhc
Confidence 45678889999999888751 122221 233456677899999999753
No 154
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=60.32 E-value=14 Score=42.11 Aligned_cols=76 Identities=22% Similarity=0.252 Sum_probs=43.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
.++++||+-..-.....+.++.+.|.+ .++++.+-..+. ..|....+... .... ..++|+||.||| |++
T Consensus 26 ~~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-Gs~ 95 (376)
T cd08193 26 AKRVLVVTDPGILKAGLIDPLLASLEA-AGIEVTVFDDVE----ADPPEAVVEAA----VEAARAAGADGVIGFGG-GSS 95 (376)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999986542233456778888876 477665432221 11111101000 0011 347899999999 888
Q ss_pred HHHHHhc
Q 002705 769 LHASNLF 775 (890)
Q Consensus 769 L~Aar~~ 775 (890)
+-+++.+
T Consensus 96 iD~aK~i 102 (376)
T cd08193 96 MDVAKLV 102 (376)
T ss_pred HHHHHHH
Confidence 8888764
No 155
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=60.18 E-value=8.2 Score=46.61 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=37.3
Q ss_pred CCccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC-------C-----CcccccCCCcccHHHHHHHH
Q 002705 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSHPFEDYRQDLRQV 808 (890)
Q Consensus 754 e~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGIN~-------G-----~LGFLte~~~ed~~~~L~~I 808 (890)
-++|.+|+||||||+=.|..+.. +..+||+||=- | ++||-|.... +.+.+..+
T Consensus 160 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~--~~~~I~~i 229 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKI--YSELIGNI 229 (539)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHH--HHHHHHHH
Confidence 37899999999999988877643 45699999943 2 6777775443 34444444
No 156
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=59.98 E-value=8 Score=46.94 Aligned_cols=53 Identities=26% Similarity=0.339 Sum_probs=37.9
Q ss_pred CccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC-------C-----CcccccCCCcccHHHHHHHHH
Q 002705 755 RVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSHPFEDYRQDLRQVI 809 (890)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGIN~-------G-----~LGFLte~~~ed~~~~L~~Il 809 (890)
++|.+|+||||||+-.|+.+.. +..++|+||-- | ++||=|.... +.+.+..+.
T Consensus 190 ~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~--~a~~I~ni~ 259 (568)
T PLN02251 190 DLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKI--YSEMIGNVM 259 (568)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHH--HHHHHHHHH
Confidence 7899999999999998887643 45699999843 2 6688775443 445555554
No 157
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=59.84 E-value=18 Score=45.23 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=49.8
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHH
Q 002705 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (890)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTl 768 (890)
..++|+||-..+. ....+.+||.+ .|+++.+-..... .+..+ ..++|.||+.||-|+.
T Consensus 515 ~~~~IlVID~gds----~~~~l~~~L~~-~G~~v~vv~~~~~----------------~~~~~-~~~~DgLILsgGPGsp 572 (717)
T TIGR01815 515 EGRRILLVDHEDS----FVHTLANYLRQ-TGASVTTLRHSHA----------------EAAFD-ERRPDLVVLSPGPGRP 572 (717)
T ss_pred CCCEEEEEECCCh----hHHHHHHHHHH-CCCeEEEEECCCC----------------hhhhh-hcCCCEEEEcCCCCCc
Confidence 3568999976642 24567888876 5877654322100 00001 1358999999999885
Q ss_pred -----HHHHHhcCCCCCcEEEEeCCC
Q 002705 769 -----LHASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 769 -----L~Aar~~~~~~~PILGIN~G~ 789 (890)
....+.+...++|||||-+|+
T Consensus 573 ~d~~~~~~I~~~~~~~iPvLGICLG~ 598 (717)
T TIGR01815 573 ADFDVAGTIDAALARGLPVFGVCLGL 598 (717)
T ss_pred hhcccHHHHHHHHHCCCCEEEECHHH
Confidence 334444445689999999984
No 158
>PRK07411 hypothetical protein; Validated
Probab=59.08 E-value=18 Score=41.78 Aligned_cols=83 Identities=23% Similarity=0.281 Sum_probs=47.1
Q ss_pred CCCHhhHHHHHHcCC--cEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEE
Q 002705 274 QVTEEGLKWLMEKGY--KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLY 351 (890)
Q Consensus 274 qpT~eDl~~L~~lGI--KTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVL 351 (890)
.++.+++..+.+.+- -.|||.|+.. + +. .-...| -+++|+.+.... .....+.++ ..++||+
T Consensus 283 ~Is~~el~~~l~~~~~~~vlIDVR~~~-E---~~-----~ghIpG--AiniP~~~l~~~--~~~~~l~~l---~~d~~IV 346 (390)
T PRK07411 283 EMTVTELKALLDSGADDFVLIDVRNPN-E---YE-----IARIPG--SVLVPLPDIENG--PGVEKVKEL---LNGHRLI 346 (390)
T ss_pred ccCHHHHHHHHhCCCCCeEEEECCCHH-H---hc-----cCcCCC--CEEccHHHhhcc--cchHHHhhc---CCCCeEE
Confidence 467888887766552 3689999975 1 11 011123 345665422111 011222222 2467999
Q ss_pred EeCccCCChHHHHHHHHHHhCCC
Q 002705 352 LHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 352 VHCtAGKDRTGalvaLlr~~lGv 374 (890)
+||..|. |+...+..++. +|.
T Consensus 347 vyC~~G~-RS~~aa~~L~~-~G~ 367 (390)
T PRK07411 347 AHCKMGG-RSAKALGILKE-AGI 367 (390)
T ss_pred EECCCCH-HHHHHHHHHHH-cCC
Confidence 9999998 98876555543 565
No 159
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=59.03 E-value=15 Score=44.43 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=23.9
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhC
Q 002705 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYM 372 (890)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGalvaLlr~~l 372 (890)
..+.+|||||.-|.|||..+..|...++
T Consensus 342 ~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 342 SEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred hCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 4568999999999999999998887644
No 160
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=58.57 E-value=11 Score=48.52 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=34.2
Q ss_pred HHhhcCCCcccee----eeeccCCCCCCCcccceeehhhh--HHHhhh---cCCc
Q 002705 112 MDTLCNPLTGECT----VSYEFTPEEKPLLEDKIVSVLGC--MLSLLN---KGRE 157 (890)
Q Consensus 112 ~~~~~~~~~~ec~----v~~~~~~~~~~~led~ii~~~~~--~~~~ln---~g~~ 157 (890)
..+||=+-+|+|+ --|-|+.|...|-.....+.|.. -+..+| +|+.
T Consensus 679 iRtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPi 733 (1087)
T KOG4228|consen 679 IRTFALKKQGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPI 733 (1087)
T ss_pred EEeeeccccCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCE
Confidence 3578888889998 44889999988888888888777 344444 4666
No 161
>PRK13566 anthranilate synthase; Provisional
Probab=58.49 E-value=22 Score=44.47 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=51.6
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH-
Q 002705 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV- 767 (890)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGT- 767 (890)
..++|+||-+.+. ....+.+||.+ .|.+|.+-...... +.-+ ..++|.||+.||-|+
T Consensus 525 ~g~~IlvID~~ds----f~~~l~~~Lr~-~G~~v~vv~~~~~~----------------~~~~-~~~~DgVVLsgGpgsp 582 (720)
T PRK13566 525 EGKRVLLVDHEDS----FVHTLANYFRQ-TGAEVTTVRYGFAE----------------EMLD-RVNPDLVVLSPGPGRP 582 (720)
T ss_pred CCCEEEEEECCCc----hHHHHHHHHHH-CCCEEEEEECCCCh----------------hHhh-hcCCCEEEECCCCCCh
Confidence 4568988887742 25578888876 58877653321100 0001 135899999999875
Q ss_pred ----HHHHHHhcCCCCCcEEEEeCCC
Q 002705 768 ----ILHASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 768 ----lL~Aar~~~~~~~PILGIN~G~ 789 (890)
+....+.+...++|||||-+|+
T Consensus 583 ~d~~~~~lI~~a~~~~iPILGIClG~ 608 (720)
T PRK13566 583 SDFDCKATIDAALARNLPIFGVCLGL 608 (720)
T ss_pred hhCCcHHHHHHHHHCCCcEEEEehhH
Confidence 4555555556789999999983
No 162
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=58.47 E-value=9.2 Score=46.34 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=37.0
Q ss_pred CccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC------------CCcccccCCCcccHHHHHHHH
Q 002705 755 RVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL------------GSLGFLTSHPFEDYRQDLRQV 808 (890)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGIN~------------G~LGFLte~~~ed~~~~L~~I 808 (890)
++|.+|+||||||+=.|..+.. +..+||+||-- =++||=|.... +.+.+..+
T Consensus 164 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~--~~~~I~~i 232 (555)
T PRK07085 164 KLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKT--YSEMIGNI 232 (555)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHH--HHHHHHHH
Confidence 7899999999999988877643 35899999932 26777765443 34445444
No 163
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=58.12 E-value=36 Score=34.86 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=55.0
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchh--h-hhhcCCCCccceeeeccCcccc-CCCccEEEEEcCc
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVH--D-IFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGD 765 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va--~-~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGD 765 (890)
.+||+|+.-++-+..+++. ..+.|.+ .|++|.+-.... . ......+. ........++. .++.|+|++.||.
T Consensus 2 ~~~~~il~~~g~~~~e~~~-p~~~l~~-ag~~v~~~s~~~~~~~~v~ss~G~---~v~~d~~l~~~~~~~~D~l~ipGG~ 76 (196)
T PRK11574 2 SASALVCLAPGSEETEAVT-TIDLLVR-GGIKVTTASVASDGNLEITCSRGV---KLLADAPLVEVADGDFDVIVLPGGI 76 (196)
T ss_pred CceEEEEeCCCcchhhHhH-HHHHHHH-CCCeEEEEEccCCCCceEEcCCCC---EEeCCCCHHHCCCCCCCEEEECCCC
Confidence 4678998888765444443 3344443 255555422110 0 01101111 11111122232 2468999999996
Q ss_pred h---------HHHHHHHhcCCCCCcEEEEeCCCcccc
Q 002705 766 G---------VILHASNLFRGAVPPVISFNLGSLGFL 793 (890)
Q Consensus 766 G---------TlL~Aar~~~~~~~PILGIN~G~LGFL 793 (890)
+ .++..++.+.....+|.+|-.|..-+|
T Consensus 77 ~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll 113 (196)
T PRK11574 77 KGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVL 113 (196)
T ss_pred chhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHH
Confidence 4 367777778778999999999985544
No 164
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=58.04 E-value=24 Score=32.81 Aligned_cols=81 Identities=10% Similarity=0.055 Sum_probs=43.7
Q ss_pred cCCCCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHH-HHHHHHhcCCCC
Q 002705 272 GGQVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVE-KFASLVSNSSKK 348 (890)
Q Consensus 272 SgqpT~eDl~~L~~lG--IKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~-af~~iL~d~~~~ 348 (890)
+..++++++..+.+.+ --.|||+|+.. + +. .-...|. +++|... +. .....+ ..+.
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~-e---~~-----~ghIpgA--~~ip~~~--------l~~~~~~~i--~~~~ 65 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAE-A---YA-----RGHVPGA--INLPHRE--------ICENATAKL--DKEK 65 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHH-H---Hh-----cCCCCCC--EeCCHHH--------hhhHhhhcC--CCCC
Confidence 3367888888876654 24799999875 1 11 0111222 3344321 11 111222 3578
Q ss_pred cEEEeCccCCC-hHHHHHHHHHHhCCC
Q 002705 349 PLYLHSKEGVW-RTYAMVSRWRQYMAR 374 (890)
Q Consensus 349 PVLVHCtAGKD-RTGalvaLlr~~lGv 374 (890)
||+++|..|.. |+..++..++ .+|.
T Consensus 66 ~vvvyc~~g~~~~s~~~a~~l~-~~G~ 91 (110)
T cd01521 66 LFVVYCDGPGCNGATKAALKLA-ELGF 91 (110)
T ss_pred eEEEEECCCCCchHHHHHHHHH-HcCC
Confidence 99999998863 4444444443 3565
No 165
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=57.98 E-value=9.5 Score=44.38 Aligned_cols=93 Identities=18% Similarity=0.230 Sum_probs=52.9
Q ss_pred cccccCCchhhhhh----------cccCCCcEEEEEecCCh---hHHHHHHHHHHHHhc-CCCeEEEEcCchhhhhhcCC
Q 002705 671 SLAFTHPSTQQQML----------MWKTTPRTVLVLKKPGP---ALMEEAKEVASFLYH-QEKMNILVEPDVHDIFARIP 736 (890)
Q Consensus 671 ~~~~~~ps~~~~~L----------~W~~~pkkVlIV~K~~~---ea~e~a~eL~~~L~~-~~gieV~vE~~va~~l~~~p 736 (890)
...|-|+.+|.-.+ .-...||+++|+.+|.- ....+.+.+..++-- .-..+|+|.+...+.+..+
T Consensus 129 q~tf~~~~~q~c~~W~~~l~~~L~k~~~RPknllvFinPfgGkG~g~ki~e~V~~~F~la~v~tkvivTErAnhA~d~~- 207 (516)
T KOG1115|consen 129 QFTFGHMDLQTCQSWMDQLNYSLIKEVERPKNLLVFINPFGGKGNGSKIWETVSKIFILAKVNTKVIVTERANHAFDVM- 207 (516)
T ss_pred cceEecccHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCCCCcccchhhhhhhhEEeeecceeEEEEccccchhhhh-
Confidence 35566776654221 11237999999998853 355666665554321 1356677766543322111
Q ss_pred CCccceeeeccCccccCCCccEEEEEcCchHHHHHHH
Q 002705 737 GFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASN 773 (890)
Q Consensus 737 ~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~Aar 773 (890)
+....+++ ...|-||++||||-|=...+
T Consensus 208 --------~ei~~~~~-~~yDGiv~VGGDG~FnEiL~ 235 (516)
T KOG1115|consen 208 --------AEIQNKEL-HTYDGIVAVGGDGFFNEILN 235 (516)
T ss_pred --------hhCCHhhh-hhcccEEEecCchhHHHHHh
Confidence 11112233 45799999999998755554
No 166
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=57.94 E-value=19 Score=39.44 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHhCCCC
Q 002705 331 TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (890)
Q Consensus 331 s~E~v~af~~iL~d~~~~PVLVHCtAGKDRTGalvaLlr~~lGvs 375 (890)
+++++++++...--..++||+++|..|. |+..++..+. .+|..
T Consensus 215 ~~~~l~~~~~~~g~~~~~~ii~yC~~G~-~A~~~~~~l~-~~G~~ 257 (281)
T PRK11493 215 TTDELDAIFFGRGVSFDRPIIASCGSGV-TAAVVVLALA-TLDVP 257 (281)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCCC
Confidence 4566666554321245679999999999 8876655554 56754
No 167
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=57.87 E-value=22 Score=40.90 Aligned_cols=76 Identities=17% Similarity=0.105 Sum_probs=42.9
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
.++++||+-..-.....+.++.+.|++ .|+.+.+-..+. ..|....+..- .+.. ..++|+||.||| |..
T Consensus 31 ~~~~livt~~~~~~~g~~~~v~~~L~~-~~i~~~~f~~v~----~np~~~~v~~~----~~~~~~~~~D~IiaiGG-GS~ 100 (383)
T PRK09860 31 FTRTLIVTDNMLTKLGMAGDVQKALEE-RNIFSVIYDGTQ----PNPTTENVAAG----LKLLKENNCDSVISLGG-GSP 100 (383)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHHcCCCEEEEeCC-chH
Confidence 479999986543334567788888876 577664432221 01111000000 0001 357999999999 677
Q ss_pred HHHHHhc
Q 002705 769 LHASNLF 775 (890)
Q Consensus 769 L~Aar~~ 775 (890)
+-+++.+
T Consensus 101 iD~AK~i 107 (383)
T PRK09860 101 HDCAKGI 107 (383)
T ss_pred HHHHHHH
Confidence 7777654
No 168
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=57.72 E-value=32 Score=39.36 Aligned_cols=78 Identities=12% Similarity=0.166 Sum_probs=43.6
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 002705 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 354 (890)
Q Consensus 275 pT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHC 354 (890)
++.+++..+.+.+ -.|||.|+++ + |. .-...| -+++|.. .+......+....+.+|+++|
T Consensus 5 is~~el~~~l~~~-~~ivDvR~~~-e---~~-----~ghIpg--Ai~ip~~--------~l~~~~~~~~~~~~~~IvvyC 64 (376)
T PRK08762 5 ISPAEARARAAQG-AVLIDVREAH-E---RA-----SGQAEG--ALRIPRG--------FLELRIETHLPDRDREIVLIC 64 (376)
T ss_pred eCHHHHHHHHhCC-CEEEECCCHH-H---Hh-----CCcCCC--CEECCHH--------HHHHHHhhhcCCCCCeEEEEc
Confidence 5677787776667 4799999865 1 11 001122 2344432 233333322124578999999
Q ss_pred ccCCChHHHHHHHHHHhCCC
Q 002705 355 KEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 355 tAGKDRTGalvaLlr~~lGv 374 (890)
..|. |+..++.++ ...|.
T Consensus 65 ~~G~-rs~~aa~~L-~~~G~ 82 (376)
T PRK08762 65 ASGT-RSAHAAATL-RELGY 82 (376)
T ss_pred CCCc-HHHHHHHHH-HHcCC
Confidence 9987 766544444 33564
No 169
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=57.50 E-value=7.4 Score=39.66 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=26.0
Q ss_pred CCccEEEEEcCchHH-----HHHHHhcCCCCCcEEEEeCC
Q 002705 754 ERVDFVACLGGDGVI-----LHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 754 e~~DlVIvLGGDGTl-----L~Aar~~~~~~~PILGIN~G 788 (890)
..+|.||+.||.|+. +..++......+|||||-+|
T Consensus 41 ~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 80 (184)
T cd01743 41 LNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLG 80 (184)
T ss_pred cCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHh
Confidence 468999999999984 33343333457999999998
No 170
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=57.50 E-value=9.6 Score=46.65 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=26.2
Q ss_pred CccEEEEEcCchHHHHHHHhcC-----CCCCcEEEE
Q 002705 755 RVDFVACLGGDGVILHASNLFR-----GAVPPVISF 785 (890)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGI 785 (890)
++|.+|+||||||+-.|+.+.. +.+++|+||
T Consensus 173 ~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGI 208 (610)
T PLN03028 173 KLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGV 208 (610)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEe
Confidence 6899999999999988877543 348999999
No 171
>PRK08250 glutamine amidotransferase; Provisional
Probab=57.10 E-value=20 Score=38.47 Aligned_cols=77 Identities=17% Similarity=0.140 Sum_probs=43.1
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH----
Q 002705 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV---- 767 (890)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGT---- 767 (890)
+|+|+.+..-+- ...+..|+.+ .|+++.+-. +.. + .....-.++.|.+|+.||=.+
T Consensus 2 ~i~vi~h~~~e~---~g~~~~~~~~-~g~~~~~~~-~~~------g---------~~~p~~~~~~d~vii~GGp~~~~~~ 61 (235)
T PRK08250 2 RVHFIIHESFEA---PGAYLKWAEN-RGYDISYSR-VYA------G---------EALPENADGFDLLIVMGGPQSPRTT 61 (235)
T ss_pred eEEEEecCCCCC---chHHHHHHHH-CCCeEEEEE-ccC------C---------CCCCCCccccCEEEECCCCCChhhc
Confidence 677887665332 2335566655 576665421 100 0 001111246899999999433
Q ss_pred -----------HHHHHHhcCCCCCcEEEEeCC
Q 002705 768 -----------ILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 768 -----------lL~Aar~~~~~~~PILGIN~G 788 (890)
....++.+...++||+||-+|
T Consensus 62 ~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G 93 (235)
T PRK08250 62 REECPYFDSKAEQRLINQAIKAGKAVIGVCLG 93 (235)
T ss_pred cccccccchHHHHHHHHHHHHcCCCEEEEChh
Confidence 123344444578999999987
No 172
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=57.06 E-value=15 Score=38.37 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=44.4
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH---
Q 002705 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI--- 768 (890)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl--- 768 (890)
|+||-+.+. ....|.+||.+ .|+++.+-..... +.+++ ..++|.||..||=|..
T Consensus 2 il~idn~ds----ft~nl~~~l~~-~g~~v~v~~~~~~-----------------~~~~~~~~~~d~iIlsgGP~~p~~~ 59 (195)
T PRK07649 2 ILMIDNYDS----FTFNLVQFLGE-LGQELVVKRNDEV-----------------TISDIENMKPDFLMISPGPCSPNEA 59 (195)
T ss_pred EEEEeCCCc----cHHHHHHHHHH-CCCcEEEEeCCCC-----------------CHHHHhhCCCCEEEECCCCCChHhC
Confidence 566666654 24457788876 4777665432100 01111 2357999999999874
Q ss_pred ---HHHHHhcCCCCCcEEEEeCC
Q 002705 769 ---LHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 769 ---L~Aar~~~~~~~PILGIN~G 788 (890)
+...+.+. ..+|||||-+|
T Consensus 60 ~~~~~~i~~~~-~~~PvLGIClG 81 (195)
T PRK07649 60 GISMEVIRYFA-GKIPIFGVCLG 81 (195)
T ss_pred CCchHHHHHhc-CCCCEEEEcHH
Confidence 33333333 57999999998
No 173
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=56.76 E-value=9.9 Score=46.02 Aligned_cols=53 Identities=28% Similarity=0.408 Sum_probs=37.6
Q ss_pred CccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC-------C-----CcccccCCCcccHHHHHHHHH
Q 002705 755 RVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSHPFEDYRQDLRQVI 809 (890)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGIN~-------G-----~LGFLte~~~ed~~~~L~~Il 809 (890)
++|.+|+||||||+-.|..+.. +..++|+||-- | ++||=|.... +.+.+..+.
T Consensus 166 ~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~--~a~~I~ni~ 235 (550)
T cd00765 166 DLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKI--YSELIGNVM 235 (550)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHH--HHHHHHHHH
Confidence 6899999999999988877543 45699999943 3 6688776443 344454444
No 174
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=56.33 E-value=3.7 Score=48.89 Aligned_cols=24 Identities=17% Similarity=-0.024 Sum_probs=0.0
Q ss_pred CCCCcEEEeCccCCChHHHHHHHH
Q 002705 345 SSKKPLYLHSKEGVWRTYAMVSRW 368 (890)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGalvaLl 368 (890)
..+....+.|++||||||++-+-+
T Consensus 451 eiGavp~~NCKSGKDRTG~lD~ei 474 (559)
T PF05925_consen 451 EIGAVPCWNCKSGKDRTGMLDAEI 474 (559)
T ss_dssp ------------------------
T ss_pred hhCCeeeccCccCCccccccHHHH
Confidence 345667799999999999766544
No 175
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=55.57 E-value=28 Score=40.18 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=46.0
Q ss_pred CCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002705 274 QVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (890)
Q Consensus 274 qpT~eDl~~L~~lGI-KTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLV 352 (890)
.++++++..+.+.+- -.|||+|+.. + +. .....| -+++|+.... ..+. +..+ ..++|+++
T Consensus 288 ~Is~~el~~~l~~~~~~~lIDvR~~~-e---f~-----~ghIpG--Ainip~~~l~--~~~~----~~~l--~~d~~iVv 348 (392)
T PRK07878 288 TITPRELKEWLDSGKKIALIDVREPV-E---WD-----IVHIPG--AQLIPKSEIL--SGEA----LAKL--PQDRTIVL 348 (392)
T ss_pred ccCHHHHHHHHhCCCCeEEEECCCHH-H---Hh-----cCCCCC--CEEcChHHhc--chhH----HhhC--CCCCcEEE
Confidence 568888888776653 3699999975 1 11 011123 3456654211 1111 1122 35689999
Q ss_pred eCccCCChHHHHHHHHHHhCCC
Q 002705 353 HSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 353 HCtAGKDRTGalvaLlr~~lGv 374 (890)
+|..|. |+...+..++. .|.
T Consensus 349 yC~~G~-rS~~aa~~L~~-~G~ 368 (392)
T PRK07878 349 YCKTGV-RSAEALAALKK-AGF 368 (392)
T ss_pred EcCCCh-HHHHHHHHHHH-cCC
Confidence 999997 87655544443 464
No 176
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=55.47 E-value=10 Score=47.47 Aligned_cols=118 Identities=11% Similarity=0.087 Sum_probs=68.3
Q ss_pred CCCcEEEEEecCCh-h-HHHHHHHHHHHHhcCCCeEEEEcCc-hhhhhh---------------cCCCCcccee--ee-c
Q 002705 688 TTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPD-VHDIFA---------------RIPGFGFVQT--FY-L 746 (890)
Q Consensus 688 ~~pkkVlIV~K~~~-e-a~e~a~eL~~~L~~~~gieV~vE~~-va~~l~---------------~~p~~~~v~~--f~-~ 746 (890)
+.+++|+|+.--++ + .-..++.++++... +|++|+--.+ ....+. ..++. ...+ +. .
T Consensus 387 ~~~~rIaIltsGG~apGmNaair~vv~~a~~-~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~~~ 464 (745)
T TIGR02478 387 ASRLRIAIIHVGAPAGGMNAATRSAVRYAIA-RGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGS-ELGTNRELPG 464 (745)
T ss_pred CCceEEEEEecCCCchhHHHHHHHHHHHHHh-CCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCc-ccccCCCCch
Confidence 34579999998886 4 34455677777665 4778775433 111110 01110 0000 00 0
Q ss_pred cCcccc-----CCCccEEEEEcCchHHHHHHHhcC------CCCCcEEEEeC----------CCcccccCCCcccHHHHH
Q 002705 747 QDTSDL-----HERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL----------GSLGFLTSHPFEDYRQDL 805 (890)
Q Consensus 747 ~~~~el-----~e~~DlVIvLGGDGTlL~Aar~~~------~~~~PILGIN~----------G~LGFLte~~~ed~~~~L 805 (890)
.+...+ .-++|.+|+||||||+-.|..+.. ...+||+||-. =++||-|..+. +.+.+
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~~--~~~~i 542 (745)
T TIGR02478 465 KDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNE--ITEYC 542 (745)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHHH--HHHHH
Confidence 001111 236899999999999987766543 25699999943 37889887643 45556
Q ss_pred HHHH
Q 002705 806 RQVI 809 (890)
Q Consensus 806 ~~Il 809 (890)
+++.
T Consensus 543 d~i~ 546 (745)
T TIGR02478 543 DNIK 546 (745)
T ss_pred HHHH
Confidence 6554
No 177
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=54.51 E-value=11 Score=47.27 Aligned_cols=118 Identities=15% Similarity=0.072 Sum_probs=68.2
Q ss_pred CCCcEEEEEecCCh-hHH-HHHHHHHHHHhcCCCeEEEEcCc-hhhhhhc---------------CCCCccceeeecc--
Q 002705 688 TTPRTVLVLKKPGP-ALM-EEAKEVASFLYHQEKMNILVEPD-VHDIFAR---------------IPGFGFVQTFYLQ-- 747 (890)
Q Consensus 688 ~~pkkVlIV~K~~~-ea~-e~a~eL~~~L~~~~gieV~vE~~-va~~l~~---------------~p~~~~v~~f~~~-- 747 (890)
+..++|+|+.--++ +-+ ..++.++.+... +|.+|+--.+ +...+.. .++. ...+-...
T Consensus 387 ~~~~~IaIltsGG~apGmNaairavv~~a~~-~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LGT~R~~~~ 464 (762)
T cd00764 387 KTNLNIAIVNVGAPAAGMNAAVRSAVRYGLA-HGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGS-ELGTKRTLPK 464 (762)
T ss_pred ccccEEEEEecCCCchhHHHHHHHHHHHHHH-CCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcc-cccccCCCcH
Confidence 34579999998887 433 455677777665 4888875333 1111100 0110 00000000
Q ss_pred -Cccc----c-CCCccEEEEEcCchHHHHHHHhcC------CCCCcEEEEeC-------C---CcccccCCCcccHHHHH
Q 002705 748 -DTSD----L-HERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDL 805 (890)
Q Consensus 748 -~~~e----l-~e~~DlVIvLGGDGTlL~Aar~~~------~~~~PILGIN~-------G---~LGFLte~~~ed~~~~L 805 (890)
+... + ..++|.+|+||||||+-.+..+.. ...+|++||-. | ++||-|.++. +-+.+
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~--~~~~i 542 (762)
T cd00764 465 KDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNA--LMKYC 542 (762)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHH--HHHHH
Confidence 0000 1 236899999999999987766543 25799999943 2 7899886543 45556
Q ss_pred HHHH
Q 002705 806 RQVI 809 (890)
Q Consensus 806 ~~Il 809 (890)
+++.
T Consensus 543 d~i~ 546 (762)
T cd00764 543 DRIK 546 (762)
T ss_pred HHHH
Confidence 6664
No 178
>PLN02335 anthranilate synthase
Probab=54.49 E-value=27 Score=37.26 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=45.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
.++|+||=..+. ....|.+||.+ .|+.+.+-+.-. .+.+++ ..++|.||+.||-|..
T Consensus 18 ~~~ilviD~~ds----ft~~i~~~L~~-~g~~~~v~~~~~-----------------~~~~~~~~~~~d~iVisgGPg~p 75 (222)
T PLN02335 18 NGPIIVIDNYDS----FTYNLCQYMGE-LGCHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGTP 75 (222)
T ss_pred cCcEEEEECCCC----HHHHHHHHHHH-CCCcEEEEECCC-----------------CCHHHHHhcCCCEEEEcCCCCCh
Confidence 458888855443 23447778876 477665533200 001111 2357999999999844
Q ss_pred ------HHHHHhcCCCCCcEEEEeCC
Q 002705 769 ------LHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 769 ------L~Aar~~~~~~~PILGIN~G 788 (890)
+...+.+ ...+|||||-+|
T Consensus 76 ~d~~~~~~~~~~~-~~~~PiLGIClG 100 (222)
T PLN02335 76 QDSGISLQTVLEL-GPLVPLFGVCMG 100 (222)
T ss_pred hhccchHHHHHHh-CCCCCEEEecHH
Confidence 3344433 356999999998
No 179
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=54.41 E-value=50 Score=36.14 Aligned_cols=97 Identities=13% Similarity=0.010 Sum_probs=47.2
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchh-hhhHhhhhcCCcEEEEEecCC---------CCCCCHHHHHHHHHHHhc
Q 002705 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYE-AAIDDAILSGKVELIKIPVEV---------RTAPTMEQVEKFASLVSN 344 (890)
Q Consensus 275 pT~eDl~~L~~lGIKTVIDLRse~~ee~~~~-a~e~~~~e~~GI~yVhIPV~d---------~~~ps~E~v~af~~iL~d 344 (890)
.+.+++..+.+.+=-.|||.|+......... ..+-..-...|- +++|+.. ...++++.++++++-+--
T Consensus 7 vs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 7 VAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGA--VFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCC--EEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 4667776665554357999998531110000 000011122333 3344321 112355666666665433
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhCCC
Q 002705 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGalvaLlr~~lGv 374 (890)
..+.||+|+|..|. +..+.++..+..+|.
T Consensus 85 ~~d~~VVvyc~~~~-~~a~~~~~~l~~~G~ 113 (281)
T PRK11493 85 NQDKHLVVYDEGNL-FSAPRAWWMLRTFGV 113 (281)
T ss_pred CCCCEEEEECCCCC-chHHHHHHHHHHhcC
Confidence 45779999998775 433322222333453
No 180
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=53.28 E-value=47 Score=30.97 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=39.4
Q ss_pred CCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002705 275 VTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (890)
Q Consensus 275 pT~eDl~~L~~lG--IKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLV 352 (890)
++++++..+...+ --.|||+|+.+ +.. -...| -+++|.... ...+..+.+......+.+++|
T Consensus 4 is~~~l~~~~~~~~~~~~iiDvR~~e-----~~~-----~hi~g--A~~ip~~~l----~~~~~~~~~~~~~~~~~~iv~ 67 (113)
T cd01531 4 ISPAQLKGWIRNGRPPFQVVDVRDED-----YAG-----GHIKG--SWHYPSTRF----KAQLNQLVQLLSGSKKDTVVF 67 (113)
T ss_pred CCHHHHHHHHHcCCCCEEEEEcCCcc-----cCC-----CcCCC--CEecCHHHH----hhCHHHHHHHHhcCCCCeEEE
Confidence 4677777776654 23589999852 110 01122 234555421 112222322221134579999
Q ss_pred eCccCCChHHHHHHHH
Q 002705 353 HSKEGVWRTYAMVSRW 368 (890)
Q Consensus 353 HCtAGKDRTGalvaLl 368 (890)
||..+..|....+..+
T Consensus 68 yC~~~~~r~~~aa~~l 83 (113)
T cd01531 68 HCALSQVRGPSAARKF 83 (113)
T ss_pred EeecCCcchHHHHHHH
Confidence 9984433777554443
No 181
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=53.15 E-value=32 Score=39.08 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=42.6
Q ss_pred cEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCchHH
Q 002705 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (890)
Q Consensus 691 kkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~e-l~e~~DlVIvLGGDGTl 768 (890)
++++||+-+.. .......++.+.|.+ .|+++.+-.++. ..|....+... ... ...++|+||.||| |+.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GSv 95 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEE-LGIEYEIFDEVE----ENPSLETIMEA----VEIAKKFNADFVIGIGG-GSP 95 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 79999987654 334456778888876 476665422211 01111000000 000 1347899999999 888
Q ss_pred HHHHHh
Q 002705 769 LHASNL 774 (890)
Q Consensus 769 L~Aar~ 774 (890)
+-+++.
T Consensus 96 iD~aK~ 101 (357)
T cd08181 96 LDAAKA 101 (357)
T ss_pred HHHHHH
Confidence 888874
No 182
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=53.13 E-value=8.5 Score=45.56 Aligned_cols=19 Identities=32% Similarity=0.158 Sum_probs=15.7
Q ss_pred EEeCccCCChHHHHHHHHH
Q 002705 351 YLHSKEGVWRTYAMVSRWR 369 (890)
Q Consensus 351 LVHCtAGKDRTGalvaLlr 369 (890)
.+.|++||||||+|=+-+.
T Consensus 460 ~wNCkSGKDRTGmmD~eiK 478 (564)
T PRK15378 460 AWNCKSGKDRTGMMDSEIK 478 (564)
T ss_pred eeccCCCCccccchHHHHH
Confidence 6899999999998766553
No 183
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=52.67 E-value=49 Score=40.70 Aligned_cols=96 Identities=11% Similarity=-0.019 Sum_probs=49.0
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCC-----CCCCCHHHHHHHHHHHhcCCCCc
Q 002705 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV-----RTAPTMEQVEKFASLVSNSSKKP 349 (890)
Q Consensus 275 pT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d-----~~~ps~E~v~af~~iL~d~~~~P 349 (890)
.+.+++....+.+=-.|||-|+.+ +-.+........=...|. +++|..+ ..-.+.+++.++++-+--..++|
T Consensus 149 v~~e~v~~~l~~~~~~iIDaR~~~-ef~G~~~~~~r~GHIPGA--vnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~ 225 (610)
T PRK09629 149 ATREYLQSRLGAADLAIWDARAPT-EYSGEKVVAAKGGHIPGA--VNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKE 225 (610)
T ss_pred ccHHHHHHhhCCCCcEEEECCCcc-ccCCcccccccCCCCCCC--eecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCC
Confidence 355555554433223589999875 221110000000011222 3344321 11245666666655432245789
Q ss_pred EEEeCccCCChHHHHHHHHHHhCCCC
Q 002705 350 LYLHSKEGVWRTYAMVSRWRQYMARC 375 (890)
Q Consensus 350 VLVHCtAGKDRTGalvaLlr~~lGvs 375 (890)
|++||..|. |++.++..+ .++|.+
T Consensus 226 VVvYC~sG~-rAa~~~~~L-~~lG~~ 249 (610)
T PRK09629 226 VITHCQTHH-RSGFTYLVA-KALGYP 249 (610)
T ss_pred EEEECCCCh-HHHHHHHHH-HHcCCC
Confidence 999999997 777665554 456753
No 184
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=52.52 E-value=12 Score=49.31 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=33.7
Q ss_pred CCccEEEEEcCchHHHHHHHhcCC----------CCCcEEEEeC-------C-----CcccccCCC
Q 002705 754 ERVDFVACLGGDGVILHASNLFRG----------AVPPVISFNL-------G-----SLGFLTSHP 797 (890)
Q Consensus 754 e~~DlVIvLGGDGTlL~Aar~~~~----------~~~PILGIN~-------G-----~LGFLte~~ 797 (890)
-+.|.+|+||||||+=.|..+... ..+||+||-. | ++||-|..+
T Consensus 799 ~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~ 864 (1328)
T PTZ00468 799 FNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTK 864 (1328)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHH
Confidence 368999999999999988886432 4799999944 2 677777654
No 185
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=52.44 E-value=30 Score=39.49 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=42.5
Q ss_pred CcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchH
Q 002705 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (890)
Q Consensus 690 pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGT 767 (890)
.++++||.-... .......++.+.|.+ .|+++.+-..+.. .|....+... .... ..++|+||.||| |.
T Consensus 23 ~~r~livt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS 92 (375)
T cd08179 23 GKKAFIVTGGGSMKKFGFLDKVEAYLKE-AGIEVEVFEGVEP----DPSVETVLKG----AEAMREFEPDWIIALGG-GS 92 (375)
T ss_pred CCeEEEEeCchHHHhCChHHHHHHHHHH-cCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-cc
Confidence 368898875543 344566788888876 4776654332210 1111000000 0011 347899999999 67
Q ss_pred HHHHHHhc
Q 002705 768 ILHASNLF 775 (890)
Q Consensus 768 lL~Aar~~ 775 (890)
.+-+++.+
T Consensus 93 viD~AK~i 100 (375)
T cd08179 93 PIDAAKAM 100 (375)
T ss_pred HHHHHHHH
Confidence 77776654
No 186
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=52.34 E-value=56 Score=31.58 Aligned_cols=94 Identities=20% Similarity=0.106 Sum_probs=50.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchH--
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV-- 767 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGT-- 767 (890)
++|+|+.-++-...+.+ .+.+.|.. .++++.+-....+.+....+.. +.+ ....++. ..+.|.+|+.||.+.
T Consensus 2 ~~v~ill~~g~~~~e~~-~~~~~~~~-a~~~v~vvs~~~~~v~s~~g~~-i~~--~~~l~~~~~~~~D~liVpGg~~~~~ 76 (142)
T cd03132 2 RKVGILVADGVDAAELS-ALKAALKA-AGANVKVVAPTLGGVVDSDGKT-LEV--DQTYAGAPSVLFDAVVVPGGAEAAF 76 (142)
T ss_pred CEEEEEEcCCcCHHHHH-HHHHHHHH-CCCEEEEEecCcCceecCCCcE-Eec--ceeecCCChhhcCEEEECCCccCHH
Confidence 47888887775444433 45555554 3666554322111111111110 000 0112222 235799999999764
Q ss_pred -------HHHHHHhcCCCCCcEEEEeCCC
Q 002705 768 -------ILHASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 768 -------lL~Aar~~~~~~~PILGIN~G~ 789 (890)
++..++.+.....||.+|-.|.
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~I~aic~G~ 105 (142)
T cd03132 77 ALAPSGRALHFVTEAFKHGKPIGAVGEGS 105 (142)
T ss_pred HHccChHHHHHHHHHHhcCCeEEEcCchH
Confidence 4455666666788999998863
No 187
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=52.28 E-value=37 Score=38.94 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=43.6
Q ss_pred CcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchH
Q 002705 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (890)
Q Consensus 690 pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGT 767 (890)
.++++||+.+.. .....+.++.+.|.+ .|+++.+-.++. ..|.+..+... .+.+ ..++|+||.||| |+
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS 95 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDE-HGIEYVLYNKVT----PNPTVDQVDEA----AKLGREFGAQAVIAIGG-GS 95 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHHcCCCEEEEeCC-cc
Confidence 378999986653 344556788888876 577665433221 11111101000 0011 246899999999 77
Q ss_pred HHHHHHhc
Q 002705 768 ILHASNLF 775 (890)
Q Consensus 768 lL~Aar~~ 775 (890)
++-+++.+
T Consensus 96 ~iD~aK~i 103 (383)
T cd08186 96 PIDSAKSA 103 (383)
T ss_pred HHHHHHHH
Confidence 77777654
No 188
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=51.98 E-value=33 Score=39.24 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=51.0
Q ss_pred CcEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCchH
Q 002705 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGV 767 (890)
Q Consensus 690 pkkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~e-l~e~~DlVIvLGGDGT 767 (890)
.++++||+-+.. .....+.++.+.|.+ .|+++.+-..+.. .|....+.. -... -..++|+||.||| |+
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~----~~~~~~~~~~D~IIaiGG-GS 97 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKE-AGIEVVELGGVEP----NPRLETVRE----GIELCKEEKVDFILAVGG-GS 97 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHH-cCCeEEEECCccC----CCCHHHHHH----HHHHHHHcCCCEEEEeCC-hH
Confidence 478999976543 334556778888876 4777654322210 111100000 0000 1347899999999 78
Q ss_pred HHHHHHhcC-------------------CCCCcEEEEeC
Q 002705 768 ILHASNLFR-------------------GAVPPVISFNL 787 (890)
Q Consensus 768 lL~Aar~~~-------------------~~~~PILGIN~ 787 (890)
.+-+++.+. ...+|++.|-+
T Consensus 98 ~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 136 (382)
T cd08187 98 VIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT 136 (382)
T ss_pred HHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC
Confidence 887777542 13578998876
No 189
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=51.51 E-value=33 Score=38.71 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=17.5
Q ss_pred cEEEeCc-cCCChHHHHHHHHHHhCCC
Q 002705 349 PLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 349 PVLVHCt-AGKDRTGalvaLlr~~lGv 374 (890)
.|+++|. .|. |++.++.++.. +|.
T Consensus 76 ~vvvyC~~gG~-RS~~aa~~L~~-~G~ 100 (311)
T TIGR03167 76 QPLLYCWRGGM-RSGSLAWLLAQ-IGF 100 (311)
T ss_pred cEEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 4999995 676 99977766654 564
No 190
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=51.00 E-value=34 Score=39.22 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=41.5
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHHH
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTlL 769 (890)
++++||+-..-.......++.+.|.+ .|+++.+-.++. ..|....+.. -...+ ..++|+||.||| |+.+
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~----~~~~~~~~~~D~IIaiGG-GS~i 100 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDA-AGLAYEIYDGVK----PNPTIEVVKE----GVEVFKASGADYLIAIGG-GSPQ 100 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHH-CCCeEEEeCCCC----CCcCHHHHHH----HHHHHHhcCCCEEEEeCC-hHHH
Confidence 78999987542223457788888876 476665432221 1111110000 00011 347899999999 7777
Q ss_pred HHHHh
Q 002705 770 HASNL 774 (890)
Q Consensus 770 ~Aar~ 774 (890)
-+++.
T Consensus 101 D~aK~ 105 (382)
T PRK10624 101 DTCKA 105 (382)
T ss_pred HHHHH
Confidence 77764
No 191
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=50.72 E-value=33 Score=38.66 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=51.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
.++++||+-..-.. ....++.+.|.+ .|+++.+.. +. ..|....+... .+.. ..++|+||.||| |+.
T Consensus 22 ~~r~livt~~~~~~-~~~~~v~~~L~~-~~i~~~~~~-~~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~ 89 (351)
T cd08170 22 GKRALIIADEFVLD-LVGAKIEESLAA-AGIDARFEV-FG----GECTRAEIERL----AEIARDNGADVVIGIGG-GKT 89 (351)
T ss_pred CCeEEEEECHHHHH-HHHHHHHHHHHh-CCCeEEEEE-eC----CcCCHHHHHHH----HHHHhhcCCCEEEEecC-chh
Confidence 37899998543322 567788888876 477653221 10 01111000000 0011 247899999999 888
Q ss_pred HHHHHhcCC-CCCcEEEEeC
Q 002705 769 LHASNLFRG-AVPPVISFNL 787 (890)
Q Consensus 769 L~Aar~~~~-~~~PILGIN~ 787 (890)
+-+++.+.- ..+|++.|-+
T Consensus 90 iD~aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 90 LDTAKAVADYLGAPVVIVPT 109 (351)
T ss_pred hHHHHHHHHHcCCCEEEeCC
Confidence 998887652 4789999876
No 192
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=50.22 E-value=27 Score=39.35 Aligned_cols=90 Identities=20% Similarity=0.170 Sum_probs=48.7
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE---EcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCch
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL---VEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~---vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDG 766 (890)
.++++||+...-.. ....++.+.|.+ .|+++. ++.... .|....+......-.+.-..+.|+||.+|| |
T Consensus 20 ~~~~livtd~~~~~-~~~~~v~~~L~~-~g~~~~~~~~~~~e~-----~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-G 91 (344)
T TIGR01357 20 PSKLVIITDETVAD-LYADKLLEALQA-LGYNVLKLTVPDGEE-----SKSLETVQRLYDQLLEAGLDRSSTIIALGG-G 91 (344)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHh-cCCceeEEEeCCCCC-----CCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-h
Confidence 47899998654322 256778888876 465442 221100 000000000000000011234699999998 8
Q ss_pred HHHHHHHhcC---CCCCcEEEEeC
Q 002705 767 VILHASNLFR---GAVPPVISFNL 787 (890)
Q Consensus 767 TlL~Aar~~~---~~~~PILGIN~ 787 (890)
+++-++..++ ...+|++.|.+
T Consensus 92 sv~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 92 VVGDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHHHHccCCCEEEecC
Confidence 8888877654 45789988876
No 193
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=49.85 E-value=32 Score=38.82 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=55.5
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~ 770 (890)
++++||.-.... .....++.+.|.+ .++++.+-..+. ..|....+.... . .--..++|+||.||| |+++-
T Consensus 23 ~r~liv~d~~~~-~~~~~~v~~~l~~-~~~~~~~~~~~~----~~p~~~~v~~~~--~-~~~~~~~d~iiavGG-Gs~~D 92 (345)
T cd08171 23 KKVVVIGGKTAL-AAAKDKIKAALEQ-SGIEITDFIWYG----GESTYENVERLK--K-NPAVQEADMIFAVGG-GKAID 92 (345)
T ss_pred CEEEEEeCHHHH-HHHHHHHHHHHHH-CCCeEEEEEecC----CCCCHHHHHHHH--H-HHhhcCCCEEEEeCC-cHHHH
Confidence 789999865432 2346778888866 477654211110 011110000000 0 001347899999999 89999
Q ss_pred HHHhcCC-CCCcEEEEeC--CCcccccCC
Q 002705 771 ASNLFRG-AVPPVISFNL--GSLGFLTSH 796 (890)
Q Consensus 771 Aar~~~~-~~~PILGIN~--G~LGFLte~ 796 (890)
+++.+.- ..+|++.|.+ |+=+..+.+
T Consensus 93 ~aK~ia~~~~~p~i~VPTt~gtgse~t~~ 121 (345)
T cd08171 93 TVKVLADKLGKPVFTFPTIASNCAAVTAV 121 (345)
T ss_pred HHHHHHHHcCCCEEEecCccccCccccce
Confidence 9987653 4789999977 555555544
No 194
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=49.65 E-value=57 Score=36.56 Aligned_cols=88 Identities=13% Similarity=0.042 Sum_probs=50.3
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCC-----------CCCCCHHHHHHHHHHHhc
Q 002705 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV-----------RTAPTMEQVEKFASLVSN 344 (890)
Q Consensus 276 T~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d-----------~~~ps~E~v~af~~iL~d 344 (890)
+.+.+....+.+-+.|||-|+.+ +-.+.. .+.. .++ .=|||=.. ..-.+.+.++.|.+..--
T Consensus 159 ~~~~~~~~~~~~~~~liDaR~~~-rf~G~~-~ep~----~~~-~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi 231 (285)
T COG2897 159 DATLVADALEVPAVLLIDARSPE-RFRGKE-PEPR----DGK-AGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGI 231 (285)
T ss_pred CHHHHHHHhcCCCeEEEecCCHH-HhCCCC-CCCC----CCC-CCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCC
Confidence 44667777677777799999986 211100 0000 001 22454321 112345666666654322
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHh
Q 002705 345 SSKKPLYLHSKEGVWRTYAMVSRWRQY 371 (890)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGalvaLlr~~ 371 (890)
...++|+++|..|. |+...+..+..+
T Consensus 232 ~~~~~vI~yCgsG~-~As~~~~al~~l 257 (285)
T COG2897 232 DPDKEVIVYCGSGV-RASVTWLALAEL 257 (285)
T ss_pred CCCCCEEEEcCCch-HHHHHHHHHHHh
Confidence 56789999999999 888666666553
No 195
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=49.56 E-value=34 Score=39.09 Aligned_cols=75 Identities=21% Similarity=0.272 Sum_probs=43.3
Q ss_pred cEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 691 kkVlIV~K~~~-ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
++++||+-... .....+.++.+.|.+ .|+++.+-..+. ..|....+... .... ..++|+||.||| |..
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~-~~~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IiavGG-GS~ 95 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQ-AGVEVVVFDKVE----PNPTTTTVMEG----AALAREEGCDFVVGLGG-GSS 95 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHH-cCCeEEEeCCcc----CCCCHHHHHHH----HHHHHHcCCCEEEEeCC-ccH
Confidence 78999997654 345667888888876 577765432221 01111000000 0001 247899999999 677
Q ss_pred HHHHHhc
Q 002705 769 LHASNLF 775 (890)
Q Consensus 769 L~Aar~~ 775 (890)
+-+++.+
T Consensus 96 iD~aK~i 102 (380)
T cd08185 96 MDTAKAI 102 (380)
T ss_pred HHHHHHH
Confidence 7776653
No 196
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=49.51 E-value=25 Score=39.57 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=26.3
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEE
Q 002705 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIK 321 (890)
Q Consensus 278 eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVh 321 (890)
.+++.++++|.+||||..+.....+ +....+..+.-||+.|-
T Consensus 42 ~El~~~k~~Gg~tiVd~T~~g~GRd--~~~l~~is~~tGv~II~ 83 (308)
T PF02126_consen 42 AELKEFKAAGGRTIVDATPIGLGRD--VEALREISRRTGVNIIA 83 (308)
T ss_dssp HHHHHHHHTTEEEEEE--SGGGTB---HHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHcCCCEEEecCCcccCcC--HHHHHHHHHHhCCeEEE
Confidence 4678888899999999988752222 22345566677887764
No 197
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=49.45 E-value=41 Score=34.85 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=27.1
Q ss_pred CCccEEEEEcCchHHHH----------HHHhcCCCCCcEEEEeCCC
Q 002705 754 ERVDFVACLGGDGVILH----------ASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 754 e~~DlVIvLGGDGTlL~----------Aar~~~~~~~PILGIN~G~ 789 (890)
+.+|.+|+-||.++... ..+.+...+.||+||-.|.
T Consensus 35 ~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~ 80 (184)
T TIGR03800 35 DEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL 80 (184)
T ss_pred ccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence 46899999999998632 2333445689999999985
No 198
>PRK05380 pyrG CTP synthetase; Validated
Probab=49.40 E-value=35 Score=41.29 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=27.1
Q ss_pred CCCccEEEEEcCch-----HHHHHHHhcCCCCCcEEEEeCC
Q 002705 753 HERVDFVACLGGDG-----VILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 753 ~e~~DlVIvLGGDG-----TlL~Aar~~~~~~~PILGIN~G 788 (890)
...+|-||+-||=| -.+.+++.....++|+|||-+|
T Consensus 341 L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 341 LKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred hhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 45689999989843 2456666666779999999886
No 199
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=49.27 E-value=53 Score=36.06 Aligned_cols=88 Identities=20% Similarity=0.288 Sum_probs=51.2
Q ss_pred CCcEEEEEecCChhHHH-HHHHHHHHHhcCCCeEEEEcC------chhhhhhcCCCCccceeeeccCcccc-CCCccEEE
Q 002705 689 TPRTVLVLKKPGPALME-EAKEVASFLYHQEKMNILVEP------DVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVA 760 (890)
Q Consensus 689 ~pkkVlIV~K~~~ea~e-~a~eL~~~L~~~~gieV~vE~------~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVI 760 (890)
..++++||.-.+. .+ ..+++.+.|+. .|++|.+-. +... +.. -...+ ..++|+||
T Consensus 18 ~~~~~lvv~d~~t--~~~~g~~v~~~l~~-~g~~v~~~~~~~~~~~~~~-~~~-------------~~~~~~~~~~d~ii 80 (250)
T PF13685_consen 18 GLKKVLVVTDENT--YKAAGEKVEESLKS-AGIEVAVIEEFVGDADEDE-VEK-------------LVEALRPKDADLII 80 (250)
T ss_dssp T-SEEEEEEETTH--HHHHHHHHHHHHHT-TT-EEEEEE-EE---BHHH-HHH-------------HHTTS--TT--EEE
T ss_pred CCCcEEEEEcCCH--HHHHHHHHHHHHHH-cCCeEEEEecCCCCCCHHH-HHH-------------HHHHhcccCCCEEE
Confidence 4579999998864 22 24567777876 477775321 1111 100 01122 35789999
Q ss_pred EEcCchHHHHHHHhcCC-CCCcEEEEeC--CCccccc
Q 002705 761 CLGGDGVILHASNLFRG-AVPPVISFNL--GSLGFLT 794 (890)
Q Consensus 761 vLGGDGTlL~Aar~~~~-~~~PILGIN~--G~LGFLt 794 (890)
.+|| ||++-.+++... .++|++.|-+ =+=||-+
T Consensus 81 ~vGg-G~i~D~~K~~A~~~~~p~isVPTa~S~DG~aS 116 (250)
T PF13685_consen 81 GVGG-GTIIDIAKYAAFELGIPFISVPTAASHDGFAS 116 (250)
T ss_dssp EEES-HHHHHHHHHHHHHHT--EEEEES--SSGGGTS
T ss_pred EeCC-cHHHHHHHHHHHhcCCCEEEeccccccccccC
Confidence 9999 999999998773 6899999866 3444444
No 200
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=48.51 E-value=37 Score=38.60 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=49.4
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL 769 (890)
.++++||....-.. ....++.+.|.+..++++++-++... .|....+......-.+.-..++|+||.||| |+++
T Consensus 23 ~~k~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~~e~----~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 96 (344)
T cd08169 23 FDQYFFISDSGVAD-LIAHYIAEYLSKILPVHILVIEGGEE----YKTFETVTRILERAIALGANRRTAIVAVGG-GATG 96 (344)
T ss_pred CCeEEEEECccHHH-HHHHHHHHHHHhhcCceEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 47889998755322 35677888885413555544332110 011100000000000011246899999998 8888
Q ss_pred HHHHhcC---CCCCcEEEEeC
Q 002705 770 HASNLFR---GAVPPVISFNL 787 (890)
Q Consensus 770 ~Aar~~~---~~~~PILGIN~ 787 (890)
-++..+. ...+|++-|.+
T Consensus 97 D~ak~vA~~~~rgip~i~VPT 117 (344)
T cd08169 97 DVAGFVASTLFRGIAFIRVPT 117 (344)
T ss_pred HHHHHHHHHhccCCcEEEecC
Confidence 7777653 34788888876
No 201
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=47.84 E-value=37 Score=38.32 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=50.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL 769 (890)
.++++||+.+.-... ...++.+.|.+ .++++.+....... ..|....+... .+.+.+++|+||.||| |.++
T Consensus 23 ~~~~livtd~~~~~~-~~~~v~~~l~~-~~i~~~~~~~~~~~--~~pt~~~v~~~----~~~~~~~~d~IIaIGG-Gs~~ 93 (348)
T cd08175 23 YKKALIVADENTYAA-AGKKVEALLKR-AGVVVLLIVLPAGD--LIADEKAVGRV----LKELERDTDLIIAVGS-GTIN 93 (348)
T ss_pred CCcEEEEECCcHHHH-HHHHHHHHHHH-CCCeeEEeecCCCc--ccCCHHHHHHH----HHHhhccCCEEEEECC-cHHH
Confidence 368899986543211 25788888876 47655321111000 00111001000 0111227899999999 8999
Q ss_pred HHHHhcC-CCCCcEEEEeC
Q 002705 770 HASNLFR-GAVPPVISFNL 787 (890)
Q Consensus 770 ~Aar~~~-~~~~PILGIN~ 787 (890)
-+++.+. ...+|++-|-+
T Consensus 94 D~aK~vA~~~~~p~i~IPT 112 (348)
T cd08175 94 DITKYVSYKTGIPYISVPT 112 (348)
T ss_pred HHHHHHHHhcCCCEEEecC
Confidence 9888764 35789999876
No 202
>PTZ00287 6-phosphofructokinase; Provisional
Probab=47.82 E-value=15 Score=48.54 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=37.3
Q ss_pred CccEEEEEcCchHHHHHHHhcC---CCCCc--EEEEeC-------C-----CcccccCCCcccHHHHHHHHH
Q 002705 755 RVDFVACLGGDGVILHASNLFR---GAVPP--VISFNL-------G-----SLGFLTSHPFEDYRQDLRQVI 809 (890)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~---~~~~P--ILGIN~-------G-----~LGFLte~~~ed~~~~L~~Il 809 (890)
+.|.+|+||||||+-.|..+.. ..++| |+||-. | ++||=|.... +.+.|+.|.
T Consensus 928 ~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~--~seaI~nL~ 997 (1419)
T PTZ00287 928 QLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKV--YASLIGNVL 997 (1419)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHH--HHHHHHHHH
Confidence 7899999999999988877643 24566 999843 4 6777765443 445555554
No 203
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=47.72 E-value=29 Score=40.02 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=41.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~e-l~e~~DlVIvLGGDGTl 768 (890)
.++++||+.+.-.......++.+.|.+ .|+++.+-..+. ..|....+... .+. ...++|+||.||| |+.
T Consensus 21 ~~k~liVtd~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 90 (398)
T cd08178 21 KKRAFIVTDRFMVKLGYVDKVIDVLKR-RGVETEVFSDVE----PDPSLETVRKG----LELMNSFKPDTIIALGG-GSP 90 (398)
T ss_pred CCeEEEEcChhHHhCccHHHHHHHHHH-CCCeEEEecCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 378999985432222356788888876 477765433221 01111101000 001 1347899999999 566
Q ss_pred HHHHHhc
Q 002705 769 LHASNLF 775 (890)
Q Consensus 769 L~Aar~~ 775 (890)
+-+++.+
T Consensus 91 iD~AK~i 97 (398)
T cd08178 91 MDAAKIM 97 (398)
T ss_pred HHHHHHH
Confidence 6665543
No 204
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=47.67 E-value=1.3e+02 Score=35.06 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=66.9
Q ss_pred cccCCCcEEEEEecCChh-HHHHHHHHHHHHhcCCCeEEEEcCchhhh-hhcCCCCccceeeeccCccccCCCccEEEEE
Q 002705 685 MWKTTPRTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDI-FARIPGFGFVQTFYLQDTSDLHERVDFVACL 762 (890)
Q Consensus 685 ~W~~~pkkVlIV~K~~~e-a~e~a~eL~~~L~~~~gieV~vE~~va~~-l~~~p~~~~v~~f~~~~~~el~e~~DlVIvL 762 (890)
.|...-+.+..+.=.... ..+..+.+.+-+.. .+..|++-..-.+. ....|.-..+.. -.+..++...+|++|+=
T Consensus 231 ~~~~~d~~~vyvslGt~~~~~~l~~~~~~a~~~-l~~~vi~~~~~~~~~~~~~p~n~~v~~--~~p~~~~l~~ad~vI~h 307 (406)
T COG1819 231 YWIPADRPIVYVSLGTVGNAVELLAIVLEALAD-LDVRVIVSLGGARDTLVNVPDNVIVAD--YVPQLELLPRADAVIHH 307 (406)
T ss_pred chhcCCCCeEEEEcCCcccHHHHHHHHHHHHhc-CCcEEEEeccccccccccCCCceEEec--CCCHHHHhhhcCEEEec
Confidence 343333444444433322 25667777777765 57666654321111 111121111111 12334567899999999
Q ss_pred cCchHHHHHHHhcCCCCCcEEEEeCC-------------CcccccC---CCcccHHHHHHHHHcCC
Q 002705 763 GGDGVILHASNLFRGAVPPVISFNLG-------------SLGFLTS---HPFEDYRQDLRQVIYGN 812 (890)
Q Consensus 763 GGDGTlL~Aar~~~~~~~PILGIN~G-------------~LGFLte---~~~ed~~~~L~~Il~G~ 812 (890)
||=||+..+.+ .++|++.+-.+ ..|.... .+.+.+.+.|++++...
T Consensus 308 GG~gtt~eaL~----~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~ 369 (406)
T COG1819 308 GGAGTTSEALY----AGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADD 369 (406)
T ss_pred CCcchHHHHHH----cCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCH
Confidence 99999999976 57899987654 2332222 45556666666666543
No 205
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=47.65 E-value=30 Score=39.40 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=42.7
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
.++++||.-+.-.....+.++.+.|.+ .|+++.+-..+. ..|....+... .... ..++|+||.||| |++
T Consensus 24 ~~~~liv~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-GSv 93 (370)
T cd08192 24 IKRPLIVTDPGLAALGLVARVLALLED-AGLAAALFDEVP----PNPTEAAVEAG----LAAYRAGGCDGVIAFGG-GSA 93 (370)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999986553333457788888876 477665322221 11111100000 0011 357899999999 777
Q ss_pred HHHHHhc
Q 002705 769 LHASNLF 775 (890)
Q Consensus 769 L~Aar~~ 775 (890)
+-+++.+
T Consensus 94 iD~aK~i 100 (370)
T cd08192 94 LDLAKAV 100 (370)
T ss_pred HHHHHHH
Confidence 7777653
No 206
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=47.61 E-value=22 Score=34.86 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=51.8
Q ss_pred cEEEEEecCChh-HHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002705 691 RTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (890)
Q Consensus 691 kkVlIV~K~~~e-a~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL 769 (890)
++|+|++-++.+ ..+.+..++++|.+..|++|.++.-....+ .+.+. ..|. .....++|.||+|=--|+.-
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i---~~~g~-~~W~----~~~~~~ad~Vliv~S~~~~~ 72 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEI---ARQGP-PRWM----ERQIREADKVLIVCSPGYKE 72 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhccc---ccCCH-HHHH----HHHHhcCCEEEEEeccchhH
Confidence 589999988764 568899999999884499999875322111 11110 0111 12256789999999999877
Q ss_pred HHHHhcC
Q 002705 770 HASNLFR 776 (890)
Q Consensus 770 ~Aar~~~ 776 (890)
..-....
T Consensus 73 ~~~~~~~ 79 (150)
T PF08357_consen 73 RYDKKAD 79 (150)
T ss_pred HHHHhhc
Confidence 6665554
No 207
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=47.52 E-value=33 Score=38.93 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~ 770 (890)
++++||.-..-.......++.+.|.+ .++++.+-..+ ..-+........-..-...++|+||.||| |+++-
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~~-------~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D 94 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKE-AGIEVVIFDGV-------EPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLD 94 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHH-cCCeEEEECCC-------CCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHH
Q ss_pred HHHhcC-------------------CCCCcEEEEeC
Q 002705 771 ASNLFR-------------------GAVPPVISFNL 787 (890)
Q Consensus 771 Aar~~~-------------------~~~~PILGIN~ 787 (890)
+++.+. ...+|++.|-+
T Consensus 95 ~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPT 130 (370)
T cd08551 95 TAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPT 130 (370)
T ss_pred HHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecC
No 208
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=47.45 E-value=40 Score=38.61 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=0.0
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc--------CCCccEEEEE
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL--------HERVDFVACL 762 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el--------~e~~DlVIvL 762 (890)
++++||+.+.-.......++.+.|.+ .++++.+-.++... .+.+.+ ..++|+||.|
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~-~~i~~~~~~~v~~~---------------p~~~~v~~~~~~~~~~~~D~Iiai 93 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDE-AGIAYELFDEVKPN---------------PTITVVKAGVAAFKASGADYLIAI 93 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHH-CCCeEEEECCCCCC---------------cCHHHHHHHHHHHHhcCCCEEEEe
Q ss_pred cCchHHHHHHHhcC---------------------CCCCcEEEEeC
Q 002705 763 GGDGVILHASNLFR---------------------GAVPPVISFNL 787 (890)
Q Consensus 763 GGDGTlL~Aar~~~---------------------~~~~PILGIN~ 787 (890)
|| |.++-+++.+. ...+|++.|-+
T Consensus 94 GG-GSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 138 (379)
T TIGR02638 94 GG-GSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPT 138 (379)
T ss_pred CC-hHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECC
No 209
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=47.42 E-value=39 Score=40.90 Aligned_cols=83 Identities=19% Similarity=0.164 Sum_probs=50.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCe----EEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCch
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKM----NILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gi----eV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDG 766 (890)
-+|+||.|... ..+....+.+.|... ++ .|.+..-..+.+.. ... +...++|.||+-||=|
T Consensus 290 v~IalVGKY~~-~~daY~SI~eAL~~a-g~~~~~~V~~~~i~se~i~~------------~~~-~~L~~~dGIiLpGG~G 354 (525)
T TIGR00337 290 VTIGIVGKYVE-LKDSYLSVIEALKHA-GAKLDTKVNIKWIDSEDLEE------------EGA-EFLKGVDGILVPGGFG 354 (525)
T ss_pred cEEEEEeCCcC-CHHHHHHHHHHHHhC-ccccCCEEEEEEecHHHhhh------------hhh-hhhcCCCEEEeCCCCC
Confidence 48999999854 333346777777653 43 34332111111100 000 1235589999999975
Q ss_pred H-----HHHHHHhcCCCCCcEEEEeCC
Q 002705 767 V-----ILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 767 T-----lL~Aar~~~~~~~PILGIN~G 788 (890)
. .+.+++.+...++|++||-+|
T Consensus 355 ~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 355 ERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred ChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 4 455777777789999999987
No 210
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=47.31 E-value=27 Score=42.43 Aligned_cols=86 Identities=19% Similarity=0.236 Sum_probs=50.7
Q ss_pred CCCcEEEEEecCCh---hHHHHHHHHHHHHhcCCCe--EEEEcCc--hhhhhhcCCCCccceeeeccCccccCCCccEEE
Q 002705 688 TTPRTVLVLKKPGP---ALMEEAKEVASFLYHQEKM--NILVEPD--VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVA 760 (890)
Q Consensus 688 ~~pkkVlIV~K~~~---ea~e~a~eL~~~L~~~~gi--eV~vE~~--va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVI 760 (890)
+.+++++|+.+|.- .+.++.+..++-|....++ +|++-.. -+.++.. +....+.|-||
T Consensus 177 ~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~r---------------t~dl~kyDgIv 241 (579)
T KOG1116|consen 177 KRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVR---------------TLDLGKYDGIV 241 (579)
T ss_pred CCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHHH---------------hhhccccceEE
Confidence 36789999999874 3666665444444333454 4443322 1222210 11245789999
Q ss_pred EEcCchHHHHHHHhcCC-------CCCcEEEEeCC
Q 002705 761 CLGGDGVILHASNLFRG-------AVPPVISFNLG 788 (890)
Q Consensus 761 vLGGDGTlL~Aar~~~~-------~~~PILGIN~G 788 (890)
|+||||++-.+++=+-. ...||-=|-.|
T Consensus 242 ~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~G 276 (579)
T KOG1116|consen 242 CVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCG 276 (579)
T ss_pred EecCCcCHHHhhhccccccchhhHhcCceeEeecC
Confidence 99999999998874431 24566545444
No 211
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=47.23 E-value=46 Score=34.59 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=26.5
Q ss_pred CCccEEEEEcCchHHH----------HHHHhcCCCCCcEEEEeCCC
Q 002705 754 ERVDFVACLGGDGVIL----------HASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 754 e~~DlVIvLGGDGTlL----------~Aar~~~~~~~PILGIN~G~ 789 (890)
.++|.||.-||-++.. ..++.+...++||+||-.|.
T Consensus 42 ~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~ 87 (200)
T PRK13527 42 PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGL 87 (200)
T ss_pred ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHH
Confidence 3589999999988863 33333444689999999984
No 212
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=46.33 E-value=38 Score=40.27 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=38.1
Q ss_pred cEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHH
Q 002705 289 KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRW 368 (890)
Q Consensus 289 KTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHCtAGKDRTGalvaLl 368 (890)
..+||.|+++ + +. .......+++.+++|+.. +.....-+ ..++|++++|.+|. |+..++..+
T Consensus 408 ~~lIDVR~~~-E---~~---~~hI~g~~~~a~niP~~~--------l~~~~~~l--~~~~~iivyC~~G~-rS~~aa~~L 469 (482)
T PRK01269 408 DVIIDIRSPD-E---QE---DKPLKLEGVEVKSLPFYK--------LSTQFGDL--DQSKTYLLYCDRGV-MSRLQALYL 469 (482)
T ss_pred CEEEECCCHH-H---Hh---cCCCCCCCceEEECCHHH--------HHHHHhhc--CCCCeEEEECCCCH-HHHHHHHHH
Confidence 3588888875 1 11 001111125667777641 22222222 34679999999998 888776666
Q ss_pred HHhCCC
Q 002705 369 RQYMAR 374 (890)
Q Consensus 369 r~~lGv 374 (890)
.. +|.
T Consensus 470 ~~-~G~ 474 (482)
T PRK01269 470 RE-QGF 474 (482)
T ss_pred HH-cCC
Confidence 54 564
No 213
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=46.02 E-value=1.2e+02 Score=32.28 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=52.1
Q ss_pred hhHHHHHHcCCcEEEEcCCCcc--cCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC-CcEEEeC
Q 002705 278 EGLKWLMEKGYKTIVDIRAERV--KDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK-KPLYLHS 354 (890)
Q Consensus 278 eDl~~L~~lGIKTVIDLRse~~--ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~-~PVLVHC 354 (890)
+-++.+++.|++..+++-.... ..+.+.....+.+...|+..+.++-. ....+++++.++++.+....+ .|+-+||
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT-VGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh-cCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 4467778889999999943331 11111122334566789988887765 446789999888887764433 6777777
Q ss_pred ccCC
Q 002705 355 KEGV 358 (890)
Q Consensus 355 tAGK 358 (890)
+--.
T Consensus 198 Hn~~ 201 (265)
T cd03174 198 HNTL 201 (265)
T ss_pred CCCC
Confidence 6554
No 214
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=46.00 E-value=31 Score=39.89 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=43.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL 769 (890)
.++++|+....-.....+.++.+.|++ .|+++.+...+.. .|....+... ... --..++|+||.||| |..|
T Consensus 49 ~~~~lvv~~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~~----~P~~~~v~~~--~~~-~r~~~~D~IiavGG-GS~i 119 (395)
T PRK15454 49 LKHLFVMADSFLHQAGMTAGLTRSLAV-KGIAMTLWPCPVG----EPCITDVCAA--VAQ-LRESGCDGVIAFGG-GSVL 119 (395)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCCC----CcCHHHHHHH--HHH-HHhcCcCEEEEeCC-hHHH
Confidence 478888876543334557788888876 5887755432211 1111000000 000 00357999999999 7777
Q ss_pred HHHHhc
Q 002705 770 HASNLF 775 (890)
Q Consensus 770 ~Aar~~ 775 (890)
-+++.+
T Consensus 120 D~AKai 125 (395)
T PRK15454 120 DAAKAV 125 (395)
T ss_pred HHHHHH
Confidence 777653
No 215
>PLN02834 3-dehydroquinate synthase
Probab=44.88 E-value=36 Score=40.08 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=48.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL 769 (890)
.++++||+...-... ...++.+.|.+ .|+++.+...+...-...+....+...+..-.+.-.+..|+||.||| |+++
T Consensus 100 g~rvlIVtD~~v~~~-~~~~v~~~L~~-~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-Gsv~ 176 (433)
T PLN02834 100 GKRVLVVTNETVAPL-YLEKVVEALTA-KGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-GVIG 176 (433)
T ss_pred CCEEEEEECccHHHH-HHHHHHHHHHh-cCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-hHHH
Confidence 478999996553222 66778888876 46543321100000000000000000000000001123459999999 7888
Q ss_pred HHHHhcC---CCCCcEEEEeCC
Q 002705 770 HASNLFR---GAVPPVISFNLG 788 (890)
Q Consensus 770 ~Aar~~~---~~~~PILGIN~G 788 (890)
-++...+ ..++|++-|-+.
T Consensus 177 D~ak~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 177 DMCGFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred HHHHHHHHHhcCCCCEEEECCc
Confidence 8877542 457898887774
No 216
>PRK05637 anthranilate synthase component II; Provisional
Probab=44.80 E-value=35 Score=36.14 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=43.5
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHHH
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTlL 769 (890)
++|+||-..+.- ...++++|.+ .|+.+.+-+.-. +.+++ ..++|.||..||-|..-
T Consensus 2 ~~il~iD~~dsf----~~nl~~~l~~-~g~~~~v~~~~~------------------~~~~l~~~~~~~iIlsgGPg~~~ 58 (208)
T PRK05637 2 THVVLIDNHDSF----VYNLVDAFAV-AGYKCTVFRNTV------------------PVEEILAANPDLICLSPGPGHPR 58 (208)
T ss_pred CEEEEEECCcCH----HHHHHHHHHH-CCCcEEEEeCCC------------------CHHHHHhcCCCEEEEeCCCCCHH
Confidence 567888776542 2335556655 365554432210 01122 23578899999999885
Q ss_pred HHH---HhcC--CCCCcEEEEeCC
Q 002705 770 HAS---NLFR--GAVPPVISFNLG 788 (890)
Q Consensus 770 ~Aa---r~~~--~~~~PILGIN~G 788 (890)
.+- ..+. ...+|||||-+|
T Consensus 59 d~~~~~~li~~~~~~~PiLGIClG 82 (208)
T PRK05637 59 DAGNMMALIDRTLGQIPLLGICLG 82 (208)
T ss_pred HhhHHHHHHHHHhCCCCEEEEcHH
Confidence 541 1221 136999999998
No 217
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=44.47 E-value=56 Score=33.88 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=27.2
Q ss_pred CCccEEEEEcCchHHH----------HHHHhcCCCCCcEEEEeCCC
Q 002705 754 ERVDFVACLGGDGVIL----------HASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 754 e~~DlVIvLGGDGTlL----------~Aar~~~~~~~PILGIN~G~ 789 (890)
+.+|.||.-||-++.. ..++.+...++||+||-.|.
T Consensus 37 ~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~ 82 (189)
T PRK13525 37 DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGM 82 (189)
T ss_pred ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHH
Confidence 4689999999988763 23444556789999999884
No 218
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=44.11 E-value=37 Score=38.57 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=50.0
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~--vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGT 767 (890)
.++++||+-..-.. ....++.+.|.+ .|+++. +-++... .|.+..+......-.+.-..+.|+||.+|| |+
T Consensus 31 ~~~~livtd~~~~~-~~~~~v~~~L~~-~gi~~~~~~~~~~e~----~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gs 103 (358)
T PRK00002 31 GKKVAIVTDETVAP-LYLEKLRASLEA-AGFEVDVVVLPDGEQ----YKSLETLEKIYDALLEAGLDRSDTLIALGG-GV 103 (358)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHh-cCCceEEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cH
Confidence 47899999654322 366788888866 465443 2111100 010000000000000001235699999998 88
Q ss_pred HHHHHHhcC---CCCCcEEEEeC
Q 002705 768 ILHASNLFR---GAVPPVISFNL 787 (890)
Q Consensus 768 lL~Aar~~~---~~~~PILGIN~ 787 (890)
++-++..++ ...+|++.|.+
T Consensus 104 v~D~aK~iA~~~~~gip~i~IPT 126 (358)
T PRK00002 104 IGDLAGFAAATYMRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHHhcCCCCEEEcCc
Confidence 888888764 46889988876
No 219
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=44.07 E-value=19 Score=45.28 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=38.4
Q ss_pred CCccEEEEEcCchHHHHHHHhcC----------------------CCCCcEEEEeC-------C---CcccccCCCcccH
Q 002705 754 ERVDFVACLGGDGVILHASNLFR----------------------GAVPPVISFNL-------G---SLGFLTSHPFEDY 801 (890)
Q Consensus 754 e~~DlVIvLGGDGTlL~Aar~~~----------------------~~~~PILGIN~-------G---~LGFLte~~~ed~ 801 (890)
.++|.+|+||||||+=.|..+.. ...+||+||-- | ++||-|.++. +
T Consensus 93 ~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd~TiGfdTA~~~--i 170 (745)
T TIGR02478 93 RGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALHR--I 170 (745)
T ss_pred hCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCcCCCCHHHHHHH--H
Confidence 47899999999999877653221 24789999843 3 7888886553 4
Q ss_pred HHHHHHHHc
Q 002705 802 RQDLRQVIY 810 (890)
Q Consensus 802 ~~~L~~Il~ 810 (890)
.++++.+..
T Consensus 171 ~~aid~i~~ 179 (745)
T TIGR02478 171 CEAIDAISS 179 (745)
T ss_pred HHHHHHHHh
Confidence 566666654
No 220
>PRK09875 putative hydrolase; Provisional
Probab=44.03 E-value=1e+02 Score=34.54 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=28.2
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEE
Q 002705 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELI 320 (890)
Q Consensus 276 T~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yV 320 (890)
..+++..++++|.+||||..+..... .+....+..+..|+++|
T Consensus 36 ~~~el~~~~~~Gg~tiVd~T~~g~GR--d~~~l~~is~~tgv~Iv 78 (292)
T PRK09875 36 ICQEMNDLMTRGVRNVIEMTNRYMGR--NAQFMLDVMRETGINVV 78 (292)
T ss_pred HHHHHHHHHHhCCCeEEecCCCccCc--CHHHHHHHHHHhCCcEE
Confidence 34578888999999999998875222 12233445556666655
No 221
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=43.60 E-value=45 Score=40.04 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=29.3
Q ss_pred ccEEEEEcCchH-----HHHHHHhcCCCCCcEEEEeCC
Q 002705 756 VDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 756 ~DlVIvLGGDGT-----lL~Aar~~~~~~~PILGIN~G 788 (890)
+|-|++-||=|. -+.|++.....++|+|||-+|
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClG 381 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLG 381 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEchh
Confidence 899999999774 577888888899999999998
No 222
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=43.26 E-value=48 Score=35.82 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCchH-----HHHHHHhcCCCCCcEEEEeCC
Q 002705 753 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 753 ~e~~DlVIvLGGDGT-----lL~Aar~~~~~~~PILGIN~G 788 (890)
....|.||.-||-|+ .+.+++.....++|+|||-+|
T Consensus 53 l~~~dgivl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG 93 (235)
T cd01746 53 LKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLG 93 (235)
T ss_pred hccCCEEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhH
Confidence 356788888888532 234455555678999999987
No 223
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=43.18 E-value=43 Score=38.16 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=50.9
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHHH
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTlL 769 (890)
++++||+...-. .....++.+.|.+ .++++.+.. +. ..|....+... .+.+ ..++|+||.||| |+++
T Consensus 30 ~~~livtd~~~~-~~~~~~v~~~l~~-~~~~~~~~~-~~----~ep~~~~v~~~----~~~~~~~~~d~IIavGG-Gsv~ 97 (366)
T PRK09423 30 KRALVIADEFVL-GIVGDRVEASLKE-AGLTVVFEV-FN----GECSDNEIDRL----VAIAEENGCDVVIGIGG-GKTL 97 (366)
T ss_pred CEEEEEEChhHH-HHHHHHHHHHHHh-CCCeEEEEE-eC----CCCCHHHHHHH----HHHHHhcCCCEEEEecC-hHHH
Confidence 789999854432 2266788888876 477654321 11 01111001000 0011 236899999999 8899
Q ss_pred HHHHhcC-CCCCcEEEEeC
Q 002705 770 HASNLFR-GAVPPVISFNL 787 (890)
Q Consensus 770 ~Aar~~~-~~~~PILGIN~ 787 (890)
-+++.+. ...+|++.|-+
T Consensus 98 D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 98 DTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 9888765 24789999876
No 224
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=42.71 E-value=26 Score=40.64 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=48.9
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~e-l~e~~DlVIvLGGDGTl 768 (890)
.++++||+-++-.....+.++.+.|.+ .++++.+..++.. .|....+.. . .+. -..++|.||.||| |..
T Consensus 29 ~~r~liVTd~~~~~~g~~~~v~~~L~~-~~i~~~if~~v~p----~P~~~~v~~---~-~~~~~~~~~D~iIalGG-GS~ 98 (377)
T COG1454 29 AKRALIVTDRGLAKLGLLDKVLDSLDA-AGIEYEVFDEVEP----EPTIETVEA---G-AEVAREFGPDTIIALGG-GSV 98 (377)
T ss_pred CCceEEEECCccccchhHHHHHHHHHh-cCCeEEEecCCCC----CCCHHHHHH---H-HHHHHhcCCCEEEEeCC-ccH
Confidence 479999999886566788999999987 4877766554321 121110000 0 001 1357999999999 777
Q ss_pred HHHHHhc
Q 002705 769 LHASNLF 775 (890)
Q Consensus 769 L~Aar~~ 775 (890)
+-+++.+
T Consensus 99 ~D~AK~i 105 (377)
T COG1454 99 IDAAKAI 105 (377)
T ss_pred HHHHHHH
Confidence 7777753
No 225
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=42.35 E-value=75 Score=35.85 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=27.5
Q ss_pred ccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC
Q 002705 751 DLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL 787 (890)
Q Consensus 751 el~e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~ 787 (890)
++...+|++|+=||-||++.++. .++|++.+-.
T Consensus 287 ~ll~~~~~~I~hgG~~t~~Eal~----~G~P~v~~p~ 319 (392)
T TIGR01426 287 EILKKADAFITHGGMNSTMEALF----NGVPMVAVPQ 319 (392)
T ss_pred HHHhhCCEEEECCCchHHHHHHH----hCCCEEecCC
Confidence 45567999999999999999976 5788888754
No 226
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=42.35 E-value=34 Score=38.79 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=43.5
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~ 770 (890)
.+++||+-+.-.....+.++.+.|++ .++++.+-..+.. .|....+... ... --..++|+||.||| |+.+-
T Consensus 22 gr~lvVt~~~~~~~~~~~~v~~~L~~-~~i~~~~~~~~~~----~p~~~~v~~~--~~~-~~~~~~D~IIaiGG-GS~~D 92 (366)
T PF00465_consen 22 GRVLVVTDPSLSKSGLVDRVLDALEE-AGIEVQVFDGVGP----NPTLEDVDEA--AEQ-ARKFGADCIIAIGG-GSVMD 92 (366)
T ss_dssp TEEEEEEEHHHHHHTHHHHHHHHHHH-TTCEEEEEEEESS----S-BHHHHHHH--HHH-HHHTTSSEEEEEES-HHHHH
T ss_pred CCEEEEECchHHhCccHHHHHHHHhh-CceEEEEEecCCC----CCcHHHHHHH--HHH-HHhcCCCEEEEcCC-CCcCc
Confidence 49999997622334468889999976 4877755432211 0100000000 000 00247899999999 77787
Q ss_pred HHHhc
Q 002705 771 ASNLF 775 (890)
Q Consensus 771 Aar~~ 775 (890)
+++.+
T Consensus 93 ~aK~v 97 (366)
T PF00465_consen 93 AAKAV 97 (366)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77753
No 227
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=41.96 E-value=22 Score=46.86 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=32.5
Q ss_pred CccEEEEEcCchHHHHHHHhcC-----CCCCcEEEEeC-------C-----CcccccCCC
Q 002705 755 RVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSHP 797 (890)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGIN~-------G-----~LGFLte~~ 797 (890)
++|.+|+||||||+-.|..+.. +..++|+||-- | ++||=|...
T Consensus 196 ~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k 255 (1328)
T PTZ00468 196 KLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVK 255 (1328)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHH
Confidence 6899999999999988877543 35699999943 3 677766543
No 228
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=40.84 E-value=77 Score=36.22 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=41.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
.++++||+.+... .+.++.+.|.+ .|+++.+.. +. ..|....+... .... ..++|+||.||| |+.
T Consensus 22 ~~r~livtd~~~~---~~~~v~~~L~~-~g~~~~~~~-~~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 87 (374)
T cd08183 22 GRRVLLVTGASSL---RAAWLIEALRA-AGIEVTHVV-VA----GEPSVELVDAA----VAEARNAGCDVVIAIGG-GSV 87 (374)
T ss_pred CCcEEEEECCchH---HHHHHHHHHHH-cCCeEEEec-CC----CCcCHHHHHHH----HHHHHhcCCCEEEEecC-chH
Confidence 3789999876433 67778888876 577665432 11 01111000000 0011 347999999999 777
Q ss_pred HHHHHhc
Q 002705 769 LHASNLF 775 (890)
Q Consensus 769 L~Aar~~ 775 (890)
+-+++.+
T Consensus 88 ~D~aK~i 94 (374)
T cd08183 88 IDAGKAI 94 (374)
T ss_pred HHHHHHH
Confidence 7777653
No 229
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=40.35 E-value=80 Score=35.55 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=49.0
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCC-eEEEEcCc-hhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchH
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEK-MNILVEPD-VHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~g-ieV~vE~~-va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGT 767 (890)
++++||....-.. ....++.+.|.+. + +.+++.++ ..+.+.. . .+.+ ..++|+||.||| |+
T Consensus 26 ~~~liv~d~~~~~-~~~~~v~~~l~~~-~~~~~~~~~~~~~~~v~~---------~----~~~~~~~~~d~iIaiGG-Gs 89 (339)
T cd08173 26 GRVLVVTGPTTKS-IAGKKVEALLEDE-GEVDVVIVEDATYEEVEK---------V----ESSARDIGADFVIGVGG-GR 89 (339)
T ss_pred CeEEEEECCchHH-HHHHHHHHHHHhc-CCeEEEEeCCCCHHHHHH---------H----HHHhhhcCCCEEEEeCC-ch
Confidence 6889998654322 4566788888653 4 33333222 1111110 0 0011 236899999998 89
Q ss_pred HHHHHHhcC-CCCCcEEEEeC
Q 002705 768 ILHASNLFR-GAVPPVISFNL 787 (890)
Q Consensus 768 lL~Aar~~~-~~~~PILGIN~ 787 (890)
++-+++.+. ...+|++-|-+
T Consensus 90 ~~D~aK~~a~~~~~p~i~iPT 110 (339)
T cd08173 90 VIDVAKVAAYKLGIPFISVPT 110 (339)
T ss_pred HHHHHHHHHHhcCCCEEEecC
Confidence 999988765 35789998876
No 230
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=40.27 E-value=56 Score=27.98 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=19.6
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHhCC
Q 002705 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMA 373 (890)
Q Consensus 345 ~~~~PVLVHCtAGKDRTGalvaLlr~~lG 373 (890)
....+|+|+|..|. |+..++..++. +|
T Consensus 48 ~~~~~vv~~c~~~~-~a~~~~~~l~~-~G 74 (89)
T cd00158 48 DKDKPIVVYCRSGN-RSARAAKLLRK-AG 74 (89)
T ss_pred CCCCeEEEEeCCCc-hHHHHHHHHHH-hC
Confidence 46789999999987 77766655544 44
No 231
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=40.23 E-value=46 Score=34.52 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=21.8
Q ss_pred CCccEEEEEcCchH------------HHHHHHhcCCCCCcEEEEeCC
Q 002705 754 ERVDFVACLGGDGV------------ILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 754 e~~DlVIvLGGDGT------------lL~Aar~~~~~~~PILGIN~G 788 (890)
.++|.||. +|-|. +....+.+...+.|||||-.|
T Consensus 36 ~~~d~lil-pG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G 81 (199)
T PRK13181 36 AGADKVIL-PGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLG 81 (199)
T ss_pred ccCCEEEE-CCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHh
Confidence 35798875 55333 233344444568999999998
No 232
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=40.14 E-value=54 Score=36.96 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=50.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE-cCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~v-E~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL 769 (890)
++++||+-+.-... ...++.+.|.+ .++++.+ ..+... .|....+... ...+.+++|+||.||| |+++
T Consensus 25 ~kvlivtd~~~~~~-~~~~i~~~L~~-~~~~~~i~~~~~~~----~p~~~~v~~~----~~~~~~~~d~IIaiGG-Gsv~ 93 (332)
T cd08549 25 SKIMIVCGNNTYKV-AGKEIIERLES-NNFTKEVLERDSLL----IPDEYELGEV----LIKLDKDTEFLLGIGS-GTII 93 (332)
T ss_pred CcEEEEECCcHHHH-HHHHHHHHHHH-cCCeEEEEecCCCC----CCCHHHHHHH----HHHhhcCCCEEEEECC-cHHH
Confidence 68999987654211 23778888876 4655433 111110 0111101000 0112227899999999 8899
Q ss_pred HHHHhcC-CCCCcEEEEeC
Q 002705 770 HASNLFR-GAVPPVISFNL 787 (890)
Q Consensus 770 ~Aar~~~-~~~~PILGIN~ 787 (890)
-++..+. ...+|++-|.+
T Consensus 94 D~aK~iA~~~gip~I~VPT 112 (332)
T cd08549 94 DLVKFVSFKVGKPFISVPT 112 (332)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 8888764 35789999876
No 233
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=39.54 E-value=62 Score=36.56 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=48.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCe--EEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKM--NILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gi--eV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGT 767 (890)
.++++||+...-.. ....++.+.|.+ .|+ .+++-+... ..|.+..+......-.+.-..+.|+||.||| |+
T Consensus 24 ~~~~livtd~~~~~-~~~~~l~~~L~~-~g~~~~~~~~~~~e----~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gs 96 (345)
T cd08195 24 GSKILIVTDENVAP-LYLEKLKAALEA-AGFEVEVIVIPAGE----ASKSLETLEKLYDALLEAGLDRKSLIIALGG-GV 96 (345)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHh-cCCceEEEEeCCCC----CcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hH
Confidence 47899998655322 356788888876 353 332212110 0011000000000000011234599999998 88
Q ss_pred HHHHHHhcC---CCCCcEEEEeC
Q 002705 768 ILHASNLFR---GAVPPVISFNL 787 (890)
Q Consensus 768 lL~Aar~~~---~~~~PILGIN~ 787 (890)
++-++..++ ..++|++.|.+
T Consensus 97 v~D~ak~vA~~~~rgip~i~VPT 119 (345)
T cd08195 97 VGDLAGFVAATYMRGIDFIQIPT 119 (345)
T ss_pred HHhHHHHHHHHHhcCCCeEEcch
Confidence 888887764 45788888766
No 234
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=39.16 E-value=66 Score=37.38 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=48.7
Q ss_pred CcEEEEEecCCh-hH-HHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCcc---ceeeeccCccccCCCccEEEEEcC
Q 002705 690 PRTVLVLKKPGP-AL-MEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGF---VQTFYLQDTSDLHERVDFVACLGG 764 (890)
Q Consensus 690 pkkVlIV~K~~~-ea-~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~---v~~f~~~~~~el~e~~DlVIvLGG 764 (890)
.++++||+.+.- +. ...+.++.+.|.+ .++++.+...+....+.....+. +......-...-.++.|+||.|||
T Consensus 42 ~~r~liVtD~~v~~~~~~l~~~v~~~L~~-~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGG 120 (389)
T PRK06203 42 PKKVLVVIDSGVLRAHPDLLEQITAYFAA-HADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGG 120 (389)
T ss_pred CCeEEEEECchHHHhhhhHHHHHHHHHHh-cCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCC
Confidence 478999995542 22 3456788888865 36543221111000000000000 000000000111345679999998
Q ss_pred chHHHHHHHhcC---CCCCcEEEEeC
Q 002705 765 DGVILHASNLFR---GAVPPVISFNL 787 (890)
Q Consensus 765 DGTlL~Aar~~~---~~~~PILGIN~ 787 (890)
|+++-++..+. ..++|++-|.+
T Consensus 121 -Gsv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 121 -GAVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred -cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 88888877653 35788888775
No 235
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=38.53 E-value=56 Score=37.15 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=40.0
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
.++++||+-.... ....+.+.|.+ .++++.+-..+.. .|.+..+... .+.+ ..++|+||.||| |+.
T Consensus 23 ~~~~livtd~~~~---~~~~~~~~l~~-~~~~~~~~~~~~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-Gs~ 89 (367)
T cd08182 23 GKRVLLVTGPRSA---IASGLTDILKP-LGTLVVVFDDVQP----NPDLEDLAAG----IRLLREFGPDAVLAVGG-GSV 89 (367)
T ss_pred CCeEEEEeCchHH---HHHHHHHHHHH-cCCeEEEEcCcCC----CcCHHHHHHH----HHHHHhcCcCEEEEeCC-cHH
Confidence 4789999865433 44556777765 4666654322211 1111101000 0011 246899999998 788
Q ss_pred HHHHHhc
Q 002705 769 LHASNLF 775 (890)
Q Consensus 769 L~Aar~~ 775 (890)
+-+++.+
T Consensus 90 ~D~aK~i 96 (367)
T cd08182 90 LDTAKAL 96 (367)
T ss_pred HHHHHHH
Confidence 8877764
No 236
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=38.51 E-value=37 Score=38.18 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=49.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
.++++||+-..-... ...++.+.|.+ .++.++-+ + ...|....+... .+.. ..++|+||.||| |++
T Consensus 23 ~~~~livt~~~~~~~-~~~~v~~~l~~-~~~~~~~~--~----~~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-Gs~ 89 (337)
T cd08177 23 ASRALVLTTPSLATK-LAERVASALGD-RVAGTFDG--A----VMHTPVEVTEAA----VAAAREAGADGIVAIGG-GST 89 (337)
T ss_pred CCeEEEEcChHHHHH-HHHHHHHHhcc-CCcEEeCC--C----CCCCCHHHHHHH----HHHHHhcCCCEEEEeCC-cHH
Confidence 368999986543222 67788888865 35444311 1 001110000000 0011 257899999998 899
Q ss_pred HHHHHhcCC-CCCcEEEEeC
Q 002705 769 LHASNLFRG-AVPPVISFNL 787 (890)
Q Consensus 769 L~Aar~~~~-~~~PILGIN~ 787 (890)
+-+++.+.- ..+|++.|-+
T Consensus 90 iD~aK~ia~~~~~p~i~IPT 109 (337)
T cd08177 90 IDLAKAIALRTGLPIIAIPT 109 (337)
T ss_pred HHHHHHHHHHhcCCEEEEcC
Confidence 999987653 4789998876
No 237
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=38.50 E-value=1.5e+02 Score=32.38 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=42.4
Q ss_pred cccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC-----------------CCcccccCC---CcccHHHHHHHHH
Q 002705 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-----------------GSLGFLTSH---PFEDYRQDLRQVI 809 (890)
Q Consensus 750 ~el~e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~-----------------G~LGFLte~---~~ed~~~~L~~Il 809 (890)
.++...+|++|+-+|-+|++.|.. .++|++.+.. +..|++.+. +++++.+.|..++
T Consensus 247 ~~~l~~ad~~v~~sg~~t~~Eam~----~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll 322 (350)
T cd03785 247 AAAYAAADLVISRAGASTVAELAA----LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELL 322 (350)
T ss_pred HHHHHhcCEEEECCCHhHHHHHHH----hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh
Confidence 344567899999888778788764 5789987643 235777764 6788888898887
Q ss_pred cC
Q 002705 810 YG 811 (890)
Q Consensus 810 ~G 811 (890)
+.
T Consensus 323 ~~ 324 (350)
T cd03785 323 SD 324 (350)
T ss_pred cC
Confidence 64
No 238
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=38.49 E-value=56 Score=29.43 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=12.4
Q ss_pred CCCcEEEeCccCCChH
Q 002705 346 SKKPLYLHSKEGVWRT 361 (890)
Q Consensus 346 ~~~PVLVHCtAGKDRT 361 (890)
.+.||+++|..|. |.
T Consensus 49 ~~~~ivl~c~~G~-~~ 63 (92)
T cd01532 49 RDTPIVVYGEGGG-ED 63 (92)
T ss_pred CCCeEEEEeCCCC-ch
Confidence 4679999999998 53
No 239
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=38.43 E-value=98 Score=32.26 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=41.6
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCc--hH--
Q 002705 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD--GV-- 767 (890)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGD--GT-- 767 (890)
+|+|+-..... ...+.++|.+ .|.++.+... ..++ .++|.+|.-||- +.
T Consensus 2 ~~~v~~~~~~~----~~~~~~~l~~-~G~~~~~~~~---------------------~~~~-~~~d~iii~G~~~~~~~~ 54 (200)
T PRK13143 2 MIVIIDYGVGN----LRSVSKALER-AGAEVVITSD---------------------PEEI-LDADGIVLPGVGAFGAAM 54 (200)
T ss_pred eEEEEECCCcc----HHHHHHHHHH-CCCeEEEECC---------------------HHHH-ccCCEEEECCCCCHHHHH
Confidence 56777665433 3456667765 4776654321 0122 367988886642 22
Q ss_pred -----HHHHHHhcCCCCCcEEEEeCC
Q 002705 768 -----ILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 768 -----lL~Aar~~~~~~~PILGIN~G 788 (890)
+...++.+...+.||+||-.|
T Consensus 55 ~~~~~~~~~i~~~~~~~~PilgIC~G 80 (200)
T PRK13143 55 ENLSPLRDVILEAARSGKPFLGICLG 80 (200)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 334445555678999999887
No 240
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=38.41 E-value=84 Score=36.15 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=42.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~ 770 (890)
++++||+...-.......++.+.|.+ .|+++.+-..+.. .+....+.. ... .-...++|+||.||| |.++-
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~~----~~~~~~v~~--~~~-~~~~~~~D~IIaiGG-GS~iD 93 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAA-AGVEVEVFDGVLP----DLPRSELCD--AAS-AAARAGPDVIIGLGG-GSCID 93 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH-cCCeEEEECCCCC----CcCHHHHHH--HHH-HHHhcCCCEEEEeCC-chHHH
Confidence 78999985442223567778888876 4776654332210 000000000 000 001357899999999 78888
Q ss_pred HHHhc
Q 002705 771 ASNLF 775 (890)
Q Consensus 771 Aar~~ 775 (890)
+++.+
T Consensus 94 ~aK~i 98 (386)
T cd08191 94 LAKIA 98 (386)
T ss_pred HHHHH
Confidence 87764
No 241
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=38.31 E-value=2e+02 Score=31.28 Aligned_cols=81 Identities=10% Similarity=0.042 Sum_probs=52.8
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCC-cEEEeCc
Q 002705 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK-PLYLHSK 355 (890)
Q Consensus 277 ~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~-PVLVHCt 355 (890)
.+-++..++.|+...+++-....-.+.+.....+.+...|+..+.++=. .....|+++..+++.+....+. |+-+||+
T Consensus 115 ~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 193 (263)
T cd07943 115 EQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDS-AGAMLPDDVRERVRALREALDPTPVGFHGH 193 (263)
T ss_pred HHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCC-CCCcCHHHHHHHHHHHHHhCCCceEEEEec
Confidence 4457777888999999983332111111112234456678888887655 5567899999888887654454 8888887
Q ss_pred cCC
Q 002705 356 EGV 358 (890)
Q Consensus 356 AGK 358 (890)
--.
T Consensus 194 n~~ 196 (263)
T cd07943 194 NNL 196 (263)
T ss_pred CCc
Confidence 655
No 242
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=38.26 E-value=45 Score=37.13 Aligned_cols=86 Identities=22% Similarity=0.241 Sum_probs=48.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
.++++||+-..-.- ....++.+.|.+. +++.+...... .|.+..+... .+.+ ..++|+||.||| |++
T Consensus 23 ~~~~liv~~~~~~~-~~~~~v~~~l~~~--~~~~~~~~~~~----~p~~~~v~~~----~~~~~~~~~d~IIaiGG-Gs~ 90 (332)
T cd07766 23 FDRALVVSDEGVVK-GVGEKVADSLKKL--IAVHIFDGVGP----NPTFEEVKEA----VERARAAEVDAVIAVGG-GST 90 (332)
T ss_pred CCeEEEEeCCchhh-hHHHHHHHHHHhc--CcEEEeCCcCC----CcCHHHHHHH----HHHHHhcCcCEEEEeCC-chH
Confidence 47899998544321 5566777777652 33322111100 0111101000 0111 247899999998 899
Q ss_pred HHHHHhcCC---CCCcEEEEeC
Q 002705 769 LHASNLFRG---AVPPVISFNL 787 (890)
Q Consensus 769 L~Aar~~~~---~~~PILGIN~ 787 (890)
+-+++.+.- ..+|++.|-+
T Consensus 91 ~D~aK~ia~~~~~~~p~i~iPT 112 (332)
T cd07766 91 LDTAKAVAALLNRGLPIIIVPT 112 (332)
T ss_pred HHHHHHHHHHhcCCCCEEEEeC
Confidence 998887542 3789999876
No 243
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=38.13 E-value=28 Score=43.89 Aligned_cols=118 Identities=12% Similarity=0.165 Sum_probs=65.6
Q ss_pred CCcEEEEEecCCh-h-HHHHHHHHHHHHhcCCCeEEEEcCc-hhhhhhc-----------------CCC----Cccceee
Q 002705 689 TPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEKMNILVEPD-VHDIFAR-----------------IPG----FGFVQTF 744 (890)
Q Consensus 689 ~pkkVlIV~K~~~-e-a~e~a~eL~~~L~~~~gieV~vE~~-va~~l~~-----------------~p~----~~~v~~f 744 (890)
+.++|+|++--++ + .-..++.++..... .|++|+.-.+ ....+.. .++ ......|
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~~-~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~f 80 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGIY-VGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKEF 80 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHHH-CCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCcc
Confidence 3578999998886 4 33455667766555 4788875443 2111111 011 0000011
Q ss_pred eccC-----cccc-CCCccEEEEEcCchHHHHHHHhc----------------------CCCCCcEEEEeC-------C-
Q 002705 745 YLQD-----TSDL-HERVDFVACLGGDGVILHASNLF----------------------RGAVPPVISFNL-------G- 788 (890)
Q Consensus 745 ~~~~-----~~el-~e~~DlVIvLGGDGTlL~Aar~~----------------------~~~~~PILGIN~-------G- 788 (890)
...+ ...+ ..++|.+|+||||||+-.|..+. ....++|+||=- |
T Consensus 81 ~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gT 160 (762)
T cd00764 81 REREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGT 160 (762)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCC
Confidence 1000 0001 24789999999999987765321 123679999833 2
Q ss_pred --CcccccCCCcccHHHHHHHHH
Q 002705 789 --SLGFLTSHPFEDYRQDLRQVI 809 (890)
Q Consensus 789 --~LGFLte~~~ed~~~~L~~Il 809 (890)
++||-|.++. +.++++++.
T Consensus 161 D~TiGfdTAl~~--i~eaId~i~ 181 (762)
T cd00764 161 DMTIGTDSALHR--ICEVVDAIT 181 (762)
T ss_pred cCCCCHHHHHHH--HHHHHHHHH
Confidence 7888886553 445666554
No 244
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=37.15 E-value=92 Score=32.57 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=55.3
Q ss_pred EEEEEecCC----hhH-HHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCch
Q 002705 692 TVLVLKKPG----PAL-MEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (890)
Q Consensus 692 kVlIV~K~~----~ea-~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDG 766 (890)
|||||.+.. ... ......+.+.|.+..+++|.+.++... + ..+. .+++|+||.....|
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~-~---------------~~~~-L~~~Dvvv~~~~~~ 63 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDD-L---------------TPEN-LKGYDVVVFYNTGG 63 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGC-T---------------SHHC-HCT-SEEEEE-SSC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCccc-C---------------ChhH-hcCCCEEEEECCCC
Confidence 689998873 122 234455666665356899987665221 1 1123 35799999998887
Q ss_pred H-----HHHHHHhcCCCCCcEEEEe-CCCcccccCCCcccHHHHHHHHHcCCCC
Q 002705 767 V-----ILHASNLFRGAVPPVISFN-LGSLGFLTSHPFEDYRQDLRQVIYGNNT 814 (890)
Q Consensus 767 T-----lL~Aar~~~~~~~PILGIN-~G~LGFLte~~~ed~~~~L~~Il~G~y~ 814 (890)
+ -..+.+.+-..+.+++||+ .+...|- +.. ...+++-|.|.
T Consensus 64 ~~l~~~~~~al~~~v~~Ggglv~lH~~~~~~~~------~~~-~~~~l~Gg~f~ 110 (217)
T PF06283_consen 64 DELTDEQRAALRDYVENGGGLVGLHGAATDSFP------DWP-EYNELLGGYFK 110 (217)
T ss_dssp CGS-HHHHHHHHHHHHTT-EEEEEGGGGGCCHT------T-H-HHHHHHS--SE
T ss_pred CcCCHHHHHHHHHHHHcCCCEEEEcccccccch------hHH-HHHHeeCcccc
Confidence 4 3445555556899999999 5545563 233 33336667653
No 245
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=37.03 E-value=1.2e+02 Score=33.48 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=35.5
Q ss_pred CCCccEEEEEcCchH-------HHHHHHhcCCCCCcEEEEeCC-----CcccccCCCc
Q 002705 753 HERVDFVACLGGDGV-------ILHASNLFRGAVPPVISFNLG-----SLGFLTSHPF 798 (890)
Q Consensus 753 ~e~~DlVIvLGGDGT-------lL~Aar~~~~~~~PILGIN~G-----~LGFLte~~~ 798 (890)
.+..|++|+-||+|. ++..++.+.....+|.+|..| ..|.|.....
T Consensus 73 ~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~ 130 (322)
T PRK09393 73 LDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRA 130 (322)
T ss_pred cCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCee
Confidence 357899999999763 677777777778899999987 6788876543
No 246
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=36.88 E-value=14 Score=37.40 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=29.0
Q ss_pred CCCccEEEEEcCc------hHHHHHHHhcCCCCCcEEEEeCC
Q 002705 753 HERVDFVACLGGD------GVILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 753 ~e~~DlVIvLGGD------GTlL~Aar~~~~~~~PILGIN~G 788 (890)
..+.|.||+.||= +..+..++.+....+|||||-+|
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G 81 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLG 81 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHH
T ss_pred hcCCCEEEECCcCCccccccccccccccccccceEEEEEeeh
Confidence 4678999999993 55666677777789999999998
No 247
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=36.66 E-value=93 Score=30.72 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=26.8
Q ss_pred CccEEEEEcCchH--------HHHHHHhcCCCCCcEEEEeCCC
Q 002705 755 RVDFVACLGGDGV--------ILHASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 755 ~~DlVIvLGGDGT--------lL~Aar~~~~~~~PILGIN~G~ 789 (890)
..|.|++.||.|. ++...+.+.....||.+|-.|.
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~ 102 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGP 102 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHH
Confidence 5799999999763 4444555666789999999874
No 248
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=35.77 E-value=32 Score=39.65 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=45.4
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchH-
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV- 767 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGT- 767 (890)
.++|+|+=--- -..++++|.+ .|..+.+-+... +.+++ ..++|.||.-||.|.
T Consensus 177 ~~~I~viD~G~------k~nivr~L~~-~G~~v~vvp~~~------------------~~~~i~~~~~DGIvLSgGPgdp 231 (360)
T PRK12564 177 KYKVVAIDFGV------KRNILRELAE-RGCRVTVVPATT------------------TAEEILALNPDGVFLSNGPGDP 231 (360)
T ss_pred CCEEEEEeCCc------HHHHHHHHHH-CCCEEEEEeCCC------------------CHHHHHhcCCCEEEEeCCCCCh
Confidence 35777775431 1247778876 487776643211 01121 125788888898764
Q ss_pred -----HHHHHHhcCCCCCcEEEEeCC
Q 002705 768 -----ILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 768 -----lL~Aar~~~~~~~PILGIN~G 788 (890)
.+..++.+...++||+||-+|
T Consensus 232 ~~~~~~~~~i~~~~~~~~PilGIClG 257 (360)
T PRK12564 232 AALDYAIEMIRELLEKKIPIFGICLG 257 (360)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECHH
Confidence 344555555568999999998
No 249
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=35.26 E-value=95 Score=34.27 Aligned_cols=84 Identities=21% Similarity=0.237 Sum_probs=49.0
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcC----c-
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG----D- 765 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGG----D- 765 (890)
++|+|+.-++..... ++.+.|++ .|+++.+-.- .+.. +.....+++|.||+.|| |
T Consensus 4 ~kvaVl~~pG~n~d~---e~~~Al~~-aG~~v~~v~~-~~~~---------------~~~~~l~~~DgLvipGGfs~gD~ 63 (261)
T PRK01175 4 IRVAVLRMEGTNCED---ETVKAFRR-LGVEPEYVHI-NDLA---------------AERKSVSDYDCLVIPGGFSAGDY 63 (261)
T ss_pred CEEEEEeCCCCCCHH---HHHHHHHH-CCCcEEEEee-cccc---------------ccccchhhCCEEEECCCCCcccc
Confidence 489999988864222 33455544 4665543211 0000 00111356899999999 2
Q ss_pred ---hH---------HHHHHHhcCCCCCcEEEEeCC-----Cccccc
Q 002705 766 ---GV---------ILHASNLFRGAVPPVISFNLG-----SLGFLT 794 (890)
Q Consensus 766 ---GT---------lL~Aar~~~~~~~PILGIN~G-----~LGFLt 794 (890)
|. +..+++.+...+.||+||-.| .+|.|-
T Consensus 64 l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLp 109 (261)
T PRK01175 64 IRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLP 109 (261)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCC
Confidence 11 125556667789999999886 367664
No 250
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=33.89 E-value=2.9e+02 Score=29.97 Aligned_cols=78 Identities=8% Similarity=0.079 Sum_probs=48.2
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002705 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (890)
Q Consensus 280 l~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHCtAGK 358 (890)
++..++.|+...+++-....-.+.+.....+.+...|+..+.++=. .....|+++..++..+....+-|+-+||+--.
T Consensus 116 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~ 193 (259)
T cd07939 116 VGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADT-VGILDPFTTYELIRRLRAATDLPLEFHAHNDL 193 (259)
T ss_pred HHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4566778998888874433111111112223445678988888766 45677888888888775443467777776554
No 251
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=33.49 E-value=98 Score=34.76 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=46.0
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccc-cCCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~e-l~e~~DlVIvLGGDGTl 768 (890)
.++++||+.+.-.......++.+.|.+ . +++.+..++. ..|....+... .+. ...++|+||.||| |..
T Consensus 22 ~~~~lvv~~~~~~~~g~~~~v~~~l~~-~-~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IiaiGG-Gs~ 90 (332)
T cd08180 22 NKRVLIVTDPFMVKSGMLDKVTDHLDS-S-IEVEIFSDVV----PDPPIEVVAKG----IKKFLDFKPDIVIALGG-GSA 90 (332)
T ss_pred CCeEEEEeCchhhhCccHHHHHHHHHh-c-CcEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEECC-chH
Confidence 378999985432222356778888865 2 4443322211 01111100000 000 1346899999999 677
Q ss_pred HHHHHhc--------CCCCCcEEEEeC
Q 002705 769 LHASNLF--------RGAVPPVISFNL 787 (890)
Q Consensus 769 L~Aar~~--------~~~~~PILGIN~ 787 (890)
+-+++.+ ....+|++.|-+
T Consensus 91 ~D~aKa~a~~~~~~~~~~~~p~i~VPT 117 (332)
T cd08180 91 IDAAKAIIYFAKKLGKKKKPLFIAIPT 117 (332)
T ss_pred HHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 7777632 123479998876
No 252
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=33.18 E-value=2.5e+02 Score=30.80 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=51.4
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC--CcEEEeCc
Q 002705 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK--KPLYLHSK 355 (890)
Q Consensus 278 eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~--~PVLVHCt 355 (890)
+-++..+++|++..+++-....-.+.+.....+.+...|+..+.++=. ....+|+++.+++..+....+ -|+-+||+
T Consensus 113 ~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~H 191 (266)
T cd07944 113 PLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS-FGSMYPEDIKRIISLLRSNLDKDIKLGFHAH 191 (266)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC-CCCCCHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 336666778999999876543111111112233455678888888766 456789999888888754433 68888887
Q ss_pred cCC
Q 002705 356 EGV 358 (890)
Q Consensus 356 AGK 358 (890)
--.
T Consensus 192 n~~ 194 (266)
T cd07944 192 NNL 194 (266)
T ss_pred CCc
Confidence 555
No 253
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=33.04 E-value=34 Score=34.90 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=25.9
Q ss_pred CccEEEEEcCchH------HHHHHHhcCCCCCcEEEEeCC
Q 002705 755 RVDFVACLGGDGV------ILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 755 ~~DlVIvLGGDGT------lL~Aar~~~~~~~PILGIN~G 788 (890)
..|.||..||-|+ .+..++.+...++||+||-.|
T Consensus 39 ~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G 78 (178)
T cd01744 39 DPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLG 78 (178)
T ss_pred CCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHH
Confidence 5799999999654 344555566678999999987
No 254
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=32.93 E-value=2.5e+02 Score=25.10 Aligned_cols=87 Identities=20% Similarity=0.169 Sum_probs=53.6
Q ss_pred cEEEEEecCChh-HHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002705 691 RTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (890)
Q Consensus 691 kkVlIV~K~~~e-a~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL 769 (890)
++|+++.-.+-. ..-...++.+++.+ .++.+.++......+ .+..+++|+|++---
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~-~~i~~~v~~~~~~~~-----------------~~~~~~~Dliist~~----- 57 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKE-NGIDVKVEQCKIAEV-----------------PSLLDDADLIVSTTK----- 57 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-CCCceEEEEecHHHh-----------------hcccCCCcEEEEcCC-----
Confidence 478899888764 33456788888865 576554432111110 112357898876432
Q ss_pred HHHHhcCCCCCcEEEEeCCCcccccCCCcccHHHHHHHH
Q 002705 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQV 808 (890)
Q Consensus 770 ~Aar~~~~~~~PILGIN~G~LGFLte~~~ed~~~~L~~I 808 (890)
.-...+.|++-|+. ||++.+.+++.+.|+.+
T Consensus 58 ----~~~~~~~p~i~v~~----~l~~~d~~~i~~~I~~~ 88 (89)
T cd05566 58 ----VPEDYGIPVINGLP----FLTGIGEDKVYEEILEA 88 (89)
T ss_pred ----cCCCCCCCEEEEee----ccccCChHHHHHHHHHh
Confidence 11133678887764 99998988888877764
No 255
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=32.64 E-value=47 Score=37.21 Aligned_cols=103 Identities=17% Similarity=0.301 Sum_probs=69.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCCccceeeeeccCCCCCCCcccceeehhhhHHHhhhcCCccccccccccccccccc
Q 002705 94 VEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVA 173 (890)
Q Consensus 94 ~~~~~~~~~~a~~l~~a~~~~~~~~~~~ec~v~~~~~~~~~~~led~ii~~~~~~~~~ln~g~~~v~s~~~~~~~~f~~~ 173 (890)
.|-+|++|....+-.. +..||-- .||.|+| -|.+-.++++|+. =-...+|+.|..
T Consensus 148 ~del~~Lv~~va~~~~--a~~L~~s----------------Lgl~~k~---~d~V~~LI~~g~~---ieAv~fi~~f~L- 202 (290)
T PF07899_consen 148 EDELLKLVVSVARRKQ--APELCRS----------------LGLSDKM---PDIVEKLIKKGKQ---IEAVRFIYAFGL- 202 (290)
T ss_pred HHHHHHHHHHhcchHh--hHHHHHH----------------cCchhhh---HHHHHHHHHCCCc---cchHHHHHHHcC-
Confidence 4668888887776555 5566632 3677776 4567788999998 455667788864
Q ss_pred ccccccccCCCcccchhhhhhhhhHHHHHHHhccCCCCcchhhHHHHHHHHHhh
Q 002705 174 DISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNV 227 (890)
Q Consensus 174 ~~~~~~~~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~~~~l~v~~kLqr~~~~ 227 (890)
.|++||.||.+.-+++..........+==++ ..+.-..-++|.+++.+
T Consensus 203 -----~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~-~a~~ea~~kel~aL~~v 250 (290)
T PF07899_consen 203 -----VDKFPPVPLLKSYLEDSKKAAKRIRKKGNSS-EAQNEANEKELAALKSV 250 (290)
T ss_pred -----CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHH
Confidence 6899999999999999777766555443222 23334445566666665
No 256
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.57 E-value=39 Score=38.12 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=28.3
Q ss_pred ccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCC
Q 002705 751 DLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 751 el~e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~G 788 (890)
++.+.++++|++|-|=|.+- ...+...++||+||--|
T Consensus 262 el~~~~~lvvTvGDDTT~va-gdIl~RfgipiiGItDg 298 (367)
T COG4069 262 ELIEGAGLVVTVGDDTTEVA-GDILYRFGIPIIGITDG 298 (367)
T ss_pred HhhccCceEEEEcCcchhHH-HHHHHhcCCcEEecccC
Confidence 45677889999998877764 45555679999998554
No 257
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=32.56 E-value=2.8e+02 Score=31.70 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=54.6
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCC--CCcEEEe
Q 002705 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSS--KKPLYLH 353 (890)
Q Consensus 276 T~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~--~~PVLVH 353 (890)
..+-+++.+++|.++.+++-....-.+.......+.+...|...+.+.=. .....|+++.+.+..+.... .-|+-||
T Consensus 116 ~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 116 SEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDS-AGAMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred HHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccC-CCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 35668888899999999996553111111122334556788888777655 45678899988888776443 3678888
Q ss_pred CccCC
Q 002705 354 SKEGV 358 (890)
Q Consensus 354 CtAGK 358 (890)
|+...
T Consensus 195 ~Hnnl 199 (333)
T TIGR03217 195 AHHNL 199 (333)
T ss_pred eCCCC
Confidence 87665
No 258
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=32.52 E-value=66 Score=38.24 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=31.6
Q ss_pred CCCccEEEEEcCchH-----HHHHHHhcCCCCCcEEEEeCC
Q 002705 753 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 753 ~e~~DlVIvLGGDGT-----lL~Aar~~~~~~~PILGIN~G 788 (890)
...+|-|++=||=|. ++.|++..+...+|.|||-+|
T Consensus 361 l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLG 401 (585)
T KOG2387|consen 361 LKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLG 401 (585)
T ss_pred hccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeehh
Confidence 456899999999775 788899999999999999998
No 259
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=32.19 E-value=75 Score=34.64 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=24.3
Q ss_pred CCCccEEEEEcCchHH----------------------HHHHHhcCCCCCcEEEEeCC
Q 002705 753 HERVDFVACLGGDGVI----------------------LHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 753 ~e~~DlVIvLGGDGTl----------------------L~Aar~~~~~~~PILGIN~G 788 (890)
.+.+|-+|..||...+ +..++.+...++|||||-.|
T Consensus 59 l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG 116 (254)
T PRK11366 59 LPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRG 116 (254)
T ss_pred HHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHh
Confidence 3457888888873222 34444444568999999997
No 260
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=31.94 E-value=59 Score=33.58 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCch--------------------
Q 002705 707 AKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG-------------------- 766 (890)
Q Consensus 707 a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDG-------------------- 766 (890)
...++++|.. .|..+.+-+..... .+.......+|.||.-||-+
T Consensus 21 ~~~~~~~l~~-~G~~~~iv~~~~~~---------------~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
T cd01745 21 NQYYVDAVRK-AGGLPVLLPPVDDE---------------EDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPE 84 (189)
T ss_pred HHHHHHHHHH-CCCEEEEeCCCCCh---------------HHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChh
Confidence 4567788876 47665543322100 00011234688898888842
Q ss_pred ---HHHHHHHhcCCCCCcEEEEeCC
Q 002705 767 ---VILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 767 ---TlL~Aar~~~~~~~PILGIN~G 788 (890)
.....++.+...++||+||-.|
T Consensus 85 r~~~~~~~~~~~~~~~~PilgiC~G 109 (189)
T cd01745 85 RDAFELALLRAALERGKPILGICRG 109 (189)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcch
Confidence 2245555555568999999998
No 261
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=31.62 E-value=76 Score=35.83 Aligned_cols=84 Identities=14% Similarity=0.174 Sum_probs=49.7
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
-++++||+-..-. .....++.+.|.+ .++.+.+-..+ |....+... .+.. ..++|+||.||| |++
T Consensus 23 ~~~~liv~d~~~~-~~~~~~l~~~L~~-~~~~~~~~~~~-------p~~~~v~~~----~~~~~~~~~D~iIavGG-Gs~ 88 (347)
T cd08172 23 GKRPLIVTGPRSW-AAAKPYLPESLAA-GEAFVLRYDGE-------CSEENIERL----AAQAKENGADVIIGIGG-GKV 88 (347)
T ss_pred CCeEEEEECHHHH-HHHHHHHHHHHhc-CeEEEEEeCCC-------CCHHHHHHH----HHHHHhcCCCEEEEeCC-cHH
Confidence 3688998876531 2345677777743 45554432221 111000000 0111 246899999999 899
Q ss_pred HHHHHhcCC-CCCcEEEEeC
Q 002705 769 LHASNLFRG-AVPPVISFNL 787 (890)
Q Consensus 769 L~Aar~~~~-~~~PILGIN~ 787 (890)
+-+++.+.. ..+|++.|.+
T Consensus 89 ~D~aK~ia~~~~~p~i~VPT 108 (347)
T cd08172 89 LDTAKAVADRLGVPVITVPT 108 (347)
T ss_pred HHHHHHHHHHhCCCEEEecC
Confidence 999987753 4789998876
No 262
>PLN02327 CTP synthase
Probab=31.04 E-value=1e+02 Score=37.63 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=27.2
Q ss_pred CCCccEEEEEcCc------hHHHHHHHhcCCCCCcEEEEeCC
Q 002705 753 HERVDFVACLGGD------GVILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 753 ~e~~DlVIvLGGD------GTlL~Aar~~~~~~~PILGIN~G 788 (890)
..++|.||+-||= |- +.+++.....++|+|||-+|
T Consensus 360 L~~~DGIvvpGGfG~~~~~G~-i~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 360 LKGADGILVPGGFGDRGVEGK-ILAAKYARENKVPYLGICLG 400 (557)
T ss_pred hccCCEEEeCCCCCCcccccH-HHHHHHHHHcCCCEEEEcHH
Confidence 4678999888883 55 34667776789999999997
No 263
>PRK07567 glutamine amidotransferase; Provisional
Probab=30.99 E-value=34 Score=36.95 Aligned_cols=36 Identities=11% Similarity=-0.061 Sum_probs=24.7
Q ss_pred CCccEEEEEcCchHH------------------HHHHHhcCCCCCcEEEEeCCC
Q 002705 754 ERVDFVACLGGDGVI------------------LHASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 754 e~~DlVIvLGGDGTl------------------L~Aar~~~~~~~PILGIN~G~ 789 (890)
+.+|.+|+.||-+.. ..+.+.+...++|||||-+|+
T Consensus 50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~ 103 (242)
T PRK07567 50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGV 103 (242)
T ss_pred hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhH
Confidence 467999999996432 122333335689999999983
No 264
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=30.55 E-value=1.4e+02 Score=30.25 Aligned_cols=87 Identities=15% Similarity=0.072 Sum_probs=52.4
Q ss_pred EEEEecCC-hh-HHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002705 693 VLVLKKPG-PA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (890)
Q Consensus 693 VlIV~K~~-~e-a~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~ 770 (890)
|+++.... .. .......+.+++.+ .|+++.+.+.-.+. .. ....+ ..-+..++|.||+.+.+.+.+.
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~-~g~~l~~~~~~~~~-~~--~~~~~-------~~~~~~~~d~ii~~~~~~~~~~ 70 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKA-AGYQVLLANSQNDA-EK--QLSAL-------ENLIARGVDGIIIAPSDLTAPT 70 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHH-cCCeEEEEeCCCCH-HH--HHHHH-------HHHHHcCCCEEEEecCCCcchh
Confidence 56666442 22 44556677777766 68877654331110 00 00000 0112347899999999988777
Q ss_pred HHHhcCCCCCcEEEEeCCCc
Q 002705 771 ASNLFRGAVPPVISFNLGSL 790 (890)
Q Consensus 771 Aar~~~~~~~PILGIN~G~L 790 (890)
.+..+....+|++.++...-
T Consensus 71 ~~~~l~~~~ip~v~~~~~~~ 90 (264)
T cd01537 71 IVKLARKAGIPVVLVDRDIP 90 (264)
T ss_pred HHHHhhhcCCCEEEeccCCC
Confidence 67777778999999987643
No 265
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=30.49 E-value=1.1e+02 Score=38.81 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=24.7
Q ss_pred CCccEEEEEcCchHH-----HHHHHhcC----CCCCcEEEEeCCC
Q 002705 754 ERVDFVACLGGDGVI-----LHASNLFR----GAVPPVISFNLGS 789 (890)
Q Consensus 754 e~~DlVIvLGGDGTl-----L~Aar~~~----~~~~PILGIN~G~ 789 (890)
...|.||+-||-|.- ...+..+. ...+|||||-+|+
T Consensus 52 ~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~ 96 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGF 96 (742)
T ss_pred cCCCEEEECCCCCCccchhhhHHHHHHHHhcccCCCcEEEEchhh
Confidence 467999999999974 22222222 2369999999984
No 266
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=30.38 E-value=47 Score=38.32 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=44.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccC-CCccEEEEEcCchHH-
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLH-ERVDFVACLGGDGVI- 768 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~-e~~DlVIvLGGDGTl- 768 (890)
++|+|+=- +- -..++++|.+ .|+.+.+-+... +.+++. ..+|.||.-||-|..
T Consensus 174 ~~i~viD~-G~-----k~ni~~~L~~-~G~~v~vvp~~~------------------~~~~i~~~~pDGIiLSgGPgdp~ 228 (358)
T TIGR01368 174 KRVVVIDF-GV-----KQNILRRLVK-RGCEVTVVPYDT------------------DAEEIKKYNPDGIFLSNGPGDPA 228 (358)
T ss_pred cEEEEEeC-Cc-----HHHHHHHHHH-CCCEEEEEcCCC------------------CHHHHHhhCCCEEEECCCCCCHH
Confidence 36776643 21 1247888877 588776643211 011221 245999999995543
Q ss_pred -----HHHHHhcCCCCCcEEEEeCCC
Q 002705 769 -----LHASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 769 -----L~Aar~~~~~~~PILGIN~G~ 789 (890)
+..++.+.. .+|||||-+|+
T Consensus 229 ~~~~~i~~i~~~~~-~~PILGIClG~ 253 (358)
T TIGR01368 229 AVEPAIETIRKLLE-KIPIFGICLGH 253 (358)
T ss_pred HHHHHHHHHHHHHc-CCCEEEECHHH
Confidence 445565555 89999999983
No 267
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=30.36 E-value=1.5e+02 Score=33.63 Aligned_cols=82 Identities=15% Similarity=0.270 Sum_probs=46.8
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCc-hhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPD-VHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~-va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
++++||....-... ...++.+.|.+...+.+++.++ ..+.+.. . .+.+ ..++|+||.||| |++
T Consensus 35 ~~~livtd~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~t~~~v~~---------~----~~~~~~~~~d~IIaiGG-Gsv 99 (350)
T PRK00843 35 GRALIVTGPTTKKI-AGDRVEENLEDAGDVEVVIVDEATMEEVEK---------V----EEKAKDVNAGFLIGVGG-GKV 99 (350)
T ss_pred CeEEEEECCcHHHH-HHHHHHHHHHhcCCeeEEeCCCCCHHHHHH---------H----HHHhhccCCCEEEEeCC-chH
Confidence 68899987764211 2456777775521233333221 1111110 0 0111 235899999999 899
Q ss_pred HHHHHhcC-CCCCcEEEEeC
Q 002705 769 LHASNLFR-GAVPPVISFNL 787 (890)
Q Consensus 769 L~Aar~~~-~~~~PILGIN~ 787 (890)
+-+++.+. ...+|++-|-+
T Consensus 100 ~D~ak~vA~~rgip~I~IPT 119 (350)
T PRK00843 100 IDVAKLAAYRLGIPFISVPT 119 (350)
T ss_pred HHHHHHHHHhcCCCEEEeCC
Confidence 98888764 35789988876
No 268
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=30.31 E-value=73 Score=36.23 Aligned_cols=75 Identities=21% Similarity=0.371 Sum_probs=37.6
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~ 770 (890)
++++||+.+.-.....+.++.+.|... .+.++ .++. ..|....+...... ..+...++|+||.||| |+++-
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~~-~~~~~--~~v~----~~pt~~~v~~~~~~-~~~~~~~~D~IIaiGG-GSviD 94 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGGR-LAALI--DDVA----PNPDVAQLDGLYAR-LWGDEGACDLVIALGG-GSVID 94 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhccC-cEEEe--CCCC----CCcCHHHHHHHHHH-HHhcCCCCCEEEEeCC-ccHHH
Confidence 789999965432234567788887542 33332 1110 00111000000000 0011134999999999 77777
Q ss_pred HHHh
Q 002705 771 ASNL 774 (890)
Q Consensus 771 Aar~ 774 (890)
+++.
T Consensus 95 ~aK~ 98 (355)
T TIGR03405 95 TAKV 98 (355)
T ss_pred HHHH
Confidence 7765
No 269
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=30.23 E-value=1.1e+02 Score=34.75 Aligned_cols=81 Identities=14% Similarity=0.202 Sum_probs=49.1
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEE--EE-cCc-hhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCc
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNI--LV-EPD-VHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGD 765 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV--~v-E~~-va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGD 765 (890)
++++||.-... ......++.+.|.+ .++.+ .+ ..+ ..+.+.. . .... ..++|+||.|||
T Consensus 23 ~~~liv~~~~~-~~~~~~~v~~~l~~-~~i~~~~~~~~~~p~~~~v~~---------~----~~~~~~~~~d~IIavGG- 86 (349)
T cd08550 23 SKVAVVGGKTV-LKKSRPRFEAALAK-SIIVVDVIVFGGECSTEEVVK---------A----LCGAEEQEADVIIGVGG- 86 (349)
T ss_pred CeEEEEEChHH-HHHHHHHHHHHHHh-cCCeeEEEEcCCCCCHHHHHH---------H----HHHHHhcCCCEEEEecC-
Confidence 68888885443 12456788888876 36532 22 111 1111100 0 0011 247899999999
Q ss_pred hHHHHHHHhcCC-CCCcEEEEeC
Q 002705 766 GVILHASNLFRG-AVPPVISFNL 787 (890)
Q Consensus 766 GTlL~Aar~~~~-~~~PILGIN~ 787 (890)
|+++-+++.+.. ..+|++-|.+
T Consensus 87 Gs~~D~aK~ia~~~~~p~i~VPT 109 (349)
T cd08550 87 GKTLDTAKAVADRLDKPIVIVPT 109 (349)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCC
Confidence 899999987653 5789999876
No 270
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=29.89 E-value=77 Score=33.68 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=24.3
Q ss_pred CccEEEEEcCchHH------------HHHHHhcCCCCCcEEEEeCCCccc
Q 002705 755 RVDFVACLGGDGVI------------LHASNLFRGAVPPVISFNLGSLGF 792 (890)
Q Consensus 755 ~~DlVIvLGGDGTl------------L~Aar~~~~~~~PILGIN~G~LGF 792 (890)
.+|.|| ++|-|.+ +..++.+.....|||||=+|.=-+
T Consensus 39 ~~d~iI-lPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll 87 (210)
T CHL00188 39 QVHALV-LPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLL 87 (210)
T ss_pred hCCEEE-ECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHH
Confidence 478876 6776653 233444444689999999996544
No 271
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=29.79 E-value=1.2e+02 Score=29.08 Aligned_cols=87 Identities=9% Similarity=0.093 Sum_probs=50.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE-cCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHH
Q 002705 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (890)
Q Consensus 691 kkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~v-E~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL 769 (890)
|+|+||.-..++ .....++.++|.+ .|.+|+. .+.. +.+ .+. .+| .+..+..+.+|++++.-.-.++.
T Consensus 1 ksiAVvGaS~~~-~~~g~~v~~~l~~-~G~~v~~Vnp~~-~~i---~G~---~~y--~sl~e~p~~iDlavv~~~~~~~~ 69 (116)
T PF13380_consen 1 KSIAVVGASDNP-GKFGYRVLRNLKA-AGYEVYPVNPKG-GEI---LGI---KCY--PSLAEIPEPIDLAVVCVPPDKVP 69 (116)
T ss_dssp -EEEEET--SST-TSHHHHHHHHHHH-TT-EEEEESTTC-SEE---TTE---E-B--SSGGGCSST-SEEEE-S-HHHHH
T ss_pred CEEEEEcccCCC-CChHHHHHHHHHh-CCCEEEEECCCc-eEE---CcE---Eee--ccccCCCCCCCEEEEEcCHHHHH
Confidence 578888754431 1235567777766 5877764 3332 222 121 122 23344568899999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCC
Q 002705 770 HASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 770 ~Aar~~~~~~~PILGIN~G 788 (890)
..++.+...++.-+=|..|
T Consensus 70 ~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 70 EIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHHHT-SEEEE-TT
T ss_pred HHHHHHHHcCCCEEEEEcc
Confidence 9999988778888888888
No 272
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=29.67 E-value=76 Score=32.82 Aligned_cols=73 Identities=12% Similarity=0.211 Sum_probs=43.1
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH---
Q 002705 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI--- 768 (890)
Q Consensus 693 VlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl--- 768 (890)
|+||-+.+.= ...|.++|.+ .|.++.+-+... .+.+++ ..++|.||.-||=|+.
T Consensus 2 il~idn~Dsf----t~nl~~~l~~-~g~~v~v~~~~~-----------------~~~~~~~~~~~d~iils~GPg~p~~~ 59 (187)
T PRK08007 2 ILLIDNYDSF----TWNLYQYFCE-LGADVLVKRNDA-----------------LTLADIDALKPQKIVISPGPCTPDEA 59 (187)
T ss_pred EEEEECCCcc----HHHHHHHHHH-CCCcEEEEeCCC-----------------CCHHHHHhcCCCEEEEcCCCCChHHC
Confidence 6777777642 3446677765 476666533210 011121 1257889999986543
Q ss_pred ---HHHHHhcCCCCCcEEEEeCC
Q 002705 769 ---LHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 769 ---L~Aar~~~~~~~PILGIN~G 788 (890)
+...+.+ ...+|||||-+|
T Consensus 60 ~~~~~~~~~~-~~~~PiLGIClG 81 (187)
T PRK08007 60 GISLDVIRHY-AGRLPILGVCLG 81 (187)
T ss_pred CccHHHHHHh-cCCCCEEEECHH
Confidence 3444444 357999999998
No 273
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=28.90 E-value=1.3e+02 Score=32.51 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=28.4
Q ss_pred ccccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeC
Q 002705 749 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL 787 (890)
Q Consensus 749 ~~el~e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~ 787 (890)
..++...+|+||+-||-+|+..++. .++|++-|-.
T Consensus 244 ~~~~m~~ad~vIs~~G~~t~~Ea~~----~g~P~l~ip~ 278 (318)
T PF13528_consen 244 FAELMAAADLVISKGGYTTISEALA----LGKPALVIPR 278 (318)
T ss_pred HHHHHHhCCEEEECCCHHHHHHHHH----cCCCEEEEeC
Confidence 3455678999999999999999975 5788888754
No 274
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=28.80 E-value=1.3e+02 Score=34.53 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=49.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EcCchhhhhhcCCCCccceeeecc-CccccCCCccEEEEEcCc
Q 002705 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQ-DTSDLHERVDFVACLGGD 765 (890)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~--vE~~va~~l~~~p~~~~v~~f~~~-~~~el~e~~DlVIvLGGD 765 (890)
.+++++||....-. .....++.+.|.+ .|+++. +-++... .+.+..+...... .......++|+||.+||
T Consensus 25 ~~~~~lvVtd~~v~-~~~~~~v~~~l~~-~g~~~~~~v~~~~e~----~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG- 97 (354)
T cd08199 25 GSGRRFVVVDQNVD-KLYGKKLREYFAH-HNIPLTILVLRAGEA----AKTMDTVLKIVDALDAFGISRRREPVLAIGG- 97 (354)
T ss_pred CCCeEEEEECccHH-HHHHHHHHHHHHh-cCCceEEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-
Confidence 46889999855432 1244678888865 465443 2121100 0000000000000 00111234499999998
Q ss_pred hHHHHHHHhcC---CCCCcEEEEeC
Q 002705 766 GVILHASNLFR---GAVPPVISFNL 787 (890)
Q Consensus 766 GTlL~Aar~~~---~~~~PILGIN~ 787 (890)
|+++-++...+ ..++|++-|.+
T Consensus 98 G~v~D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 98 GVLTDVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 88888888765 56788887766
No 275
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=28.28 E-value=1.9e+02 Score=29.25 Aligned_cols=101 Identities=17% Similarity=0.088 Sum_probs=55.9
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhh--hhhcCCCCccceeeeccCcccc-CCCccEEEEEcCc-
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHD--IFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGD- 765 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~--~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGD- 765 (890)
.++++|+...+-+..+... -.+.|.+ .|..|.+...... ......+......- ....+. .++.|.+++-||+
T Consensus 2 ~~~i~i~~~~g~e~~E~~~-p~~~l~~-ag~~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~ydal~ipGG~~ 77 (188)
T COG0693 2 MKKIAILLADGFEDLELIV-PYDVLRR-AGFEVDVASPEGKGKSVTSKRGGLVVADD--KAFDDADAADYDALVIPGGDH 77 (188)
T ss_pred CceeEEEecCcceehhHhH-HHHHHHH-CCCeEEEEecCCCcceeecccCcceEecc--cccccCCHhHCCEEEECCCcc
Confidence 4688888888865555443 2334443 3554433222111 11000110000000 011122 3578999999994
Q ss_pred --------hHHHHHHHhcCCCCCcEEEEeCCCccccc
Q 002705 766 --------GVILHASNLFRGAVPPVISFNLGSLGFLT 794 (890)
Q Consensus 766 --------GTlL~Aar~~~~~~~PILGIN~G~LGFLt 794 (890)
-.+++.++.|...+.||.+|-.|..-++.
T Consensus 78 ~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ 114 (188)
T COG0693 78 GPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAA 114 (188)
T ss_pred chhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhc
Confidence 56888889888889999999887554443
No 276
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=27.96 E-value=1.2e+02 Score=38.63 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=42.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhc-CCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCch
Q 002705 689 TPRTVLVLKKPGPALMEEAKEVASFLYH-QEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDG 766 (890)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~-~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDG 766 (890)
..++++||+.+.-.......++.+.|.. ..++++.+-.++.. .|....+... ...+ ..++|+||.||| |
T Consensus 479 ~~~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~----np~~~~v~~~----~~~~~~~~~D~IIaiGG-G 549 (862)
T PRK13805 479 GKKRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEP----DPTLSTVRKG----AELMRSFKPDTIIALGG-G 549 (862)
T ss_pred CCCEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-c
Confidence 3478999986543333356778888862 24676654332210 1111000000 0001 347899999998 7
Q ss_pred HHHHHHHhc
Q 002705 767 VILHASNLF 775 (890)
Q Consensus 767 TlL~Aar~~ 775 (890)
+.+-+++.+
T Consensus 550 SviD~AK~i 558 (862)
T PRK13805 550 SPMDAAKIM 558 (862)
T ss_pred hHHHHHHHH
Confidence 777777654
No 277
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=27.81 E-value=60 Score=37.37 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=44.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
.++|+++--- .-..++++|.+ .|+.+.+-+... +.+++ ..++|.||.-||-|..
T Consensus 167 ~~~V~viD~G------~k~ni~~~L~~-~G~~v~vvp~~~------------------~~~~i~~~~~DGIiLsgGPgdp 221 (354)
T PRK12838 167 GKHVALIDFG------YKKSILRSLSK-RGCKVTVLPYDT------------------SLEEIKNLNPDGIVLSNGPGDP 221 (354)
T ss_pred CCEEEEECCC------HHHHHHHHHHH-CCCeEEEEECCC------------------CHHHHhhcCCCEEEEcCCCCCh
Confidence 3566665442 23557777776 477776543211 01111 2368999999998853
Q ss_pred ------HHHHHhcCCCCCcEEEEeCC
Q 002705 769 ------LHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 769 ------L~Aar~~~~~~~PILGIN~G 788 (890)
+..++.+... +|||||-+|
T Consensus 222 ~~~~~~~~~i~~~~~~-~PvlGIClG 246 (354)
T PRK12838 222 KELQPYLPEIKKLISS-YPILGICLG 246 (354)
T ss_pred HHhHHHHHHHHHHhcC-CCEEEECHH
Confidence 4445554444 999999998
No 278
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=27.73 E-value=1.3e+02 Score=30.67 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=26.7
Q ss_pred CCCccEEEEEcCchHH-----------HHHHHhcCCCCCcEEEEeCCC
Q 002705 753 HERVDFVACLGGDGVI-----------LHASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 753 ~e~~DlVIvLGGDGTl-----------L~Aar~~~~~~~PILGIN~G~ 789 (890)
.+..|.||.-||-++. +...+.+...+.|++||-.|.
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~ 91 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGH 91 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccH
Confidence 3568999999997654 333444445679999999984
No 279
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=27.22 E-value=5.8e+02 Score=27.47 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=64.5
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEE----EcCch-
Q 002705 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVAC----LGGDG- 766 (890)
Q Consensus 692 kVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIv----LGGDG- 766 (890)
+|+||-.- ......|..+|.. .|++|....+..+.+... . .. +|+||. -++||
T Consensus 2 ~ILiveDd----~~i~~~l~~~L~~-~g~~v~~~~~~~~a~~~~---------------~-~~-~dlviLD~~lP~~dG~ 59 (229)
T COG0745 2 RILLVEDD----PELAELLKEYLEE-EGYEVDVAADGEEALEAA---------------R-EQ-PDLVLLDLMLPDLDGL 59 (229)
T ss_pred eEEEEcCC----HHHHHHHHHHHHH-CCCEEEEECCHHHHHHHH---------------h-cC-CCEEEEECCCCCCCHH
Confidence 45555432 2345667778876 699888766543322110 0 12 666654 37899
Q ss_pred HHHHHHHhcCCCCCcEEEEeC-------------CCccccc-CCCcccHHHHHHHHHcCC
Q 002705 767 VILHASNLFRGAVPPVISFNL-------------GSLGFLT-SHPFEDYRQDLRQVIYGN 812 (890)
Q Consensus 767 TlL~Aar~~~~~~~PILGIN~-------------G~LGFLt-e~~~ed~~~~L~~Il~G~ 812 (890)
++++-.|......+||+=+.. |-=-|++ +|++.++...+..++...
T Consensus 60 ~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 60 ELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred HHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 788888844667888886644 6666777 688899999999988765
No 280
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=27.17 E-value=3.7e+02 Score=30.72 Aligned_cols=82 Identities=12% Similarity=0.033 Sum_probs=53.6
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCC--CCcEEEe
Q 002705 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSS--KKPLYLH 353 (890)
Q Consensus 276 T~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~--~~PVLVH 353 (890)
..+-+++.+++|.++.+++-....-.+.+.....+.+...|...+.+.=. .....|+++.++++.+.... +-|+-||
T Consensus 117 ~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 117 SEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDS-AGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 34567788889999999986553111111122334456678888777655 45678999988888876443 5677777
Q ss_pred CccCC
Q 002705 354 SKEGV 358 (890)
Q Consensus 354 CtAGK 358 (890)
|+--.
T Consensus 196 ~Hnnl 200 (337)
T PRK08195 196 GHNNL 200 (337)
T ss_pred eCCCc
Confidence 76555
No 281
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=26.95 E-value=1.6e+02 Score=31.50 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=26.5
Q ss_pred CCccEEEEEcCchH--------------HHHHHHhcCCCCCcEEEEeCCC
Q 002705 754 ERVDFVACLGGDGV--------------ILHASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 754 e~~DlVIvLGGDGT--------------lL~Aar~~~~~~~PILGIN~G~ 789 (890)
+++|.||+-||-.. ++..++.+...+.||+||-.|.
T Consensus 39 ~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~ 88 (227)
T TIGR01737 39 PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGF 88 (227)
T ss_pred CCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHH
Confidence 46899999998421 4555666666789999999874
No 282
>PRK09065 glutamine amidotransferase; Provisional
Probab=26.30 E-value=48 Score=35.65 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=25.7
Q ss_pred CCccEEEEEcCchHH----------HHHHHhcCCCCCcEEEEeCC
Q 002705 754 ERVDFVACLGGDGVI----------LHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 754 e~~DlVIvLGGDGTl----------L~Aar~~~~~~~PILGIN~G 788 (890)
...|.||+.||=.+. +...+.+...++|||||-+|
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G 97 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYG 97 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChh
Confidence 457999999997652 33344444568999999998
No 283
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=26.18 E-value=4.2e+02 Score=30.68 Aligned_cols=79 Identities=6% Similarity=0.057 Sum_probs=51.7
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002705 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (890)
Q Consensus 279 Dl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHCtAGK 358 (890)
-++..++.|+...++.-......+.+.....+.+...|+..+.++=. ....+|+++.++++.+.+..+-|+-+||+--.
T Consensus 121 ~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~ 199 (378)
T PRK11858 121 AVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDT-VGILDPFTMYELVKELVEAVDIPIEVHCHNDF 199 (378)
T ss_pred HHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 35567778999888763322111122222334456689999888866 45678999988888775444678889888665
No 284
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=26.14 E-value=2.7e+02 Score=27.73 Aligned_cols=22 Identities=5% Similarity=-0.016 Sum_probs=15.3
Q ss_pred CCCcEEEeCccCCChHHHHHHHH
Q 002705 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (890)
Q Consensus 346 ~~~PVLVHCtAGKDRTGalvaLl 368 (890)
.+.||+|+|..|. ++..++..+
T Consensus 48 ~~~~vVv~c~~g~-~a~~aa~~L 69 (145)
T cd01535 48 AAERYVLTCGSSL-LARFAAADL 69 (145)
T ss_pred CCCCEEEEeCCCh-HHHHHHHHH
Confidence 4679999999975 555444444
No 285
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=26.07 E-value=1.4e+02 Score=34.93 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=45.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEcCchHH
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLGGDGTl 768 (890)
.++|+||=.--+ ..|+++|.+ .|++|.+-+.... .+++ ..++|.||.-||-|..
T Consensus 192 ~~~I~viD~g~k------~ni~~~L~~-~G~~v~vvp~~~~------------------~~~i~~~~~dgIilSgGPg~p 246 (382)
T CHL00197 192 QLKIIVIDFGVK------YNILRRLKS-FGCSITVVPATSP------------------YQDILSYQPDGILLSNGPGDP 246 (382)
T ss_pred CCEEEEEECCcH------HHHHHHHHH-CCCeEEEEcCCCC------------------HHHHhccCCCEEEEcCCCCCh
Confidence 357888876322 237888876 5888776543110 1111 1257888888886631
Q ss_pred ------HHHHHhcCCCCCcEEEEeCCC
Q 002705 769 ------LHASNLFRGAVPPVISFNLGS 789 (890)
Q Consensus 769 ------L~Aar~~~~~~~PILGIN~G~ 789 (890)
+..++.+....+||+||-+|+
T Consensus 247 ~~~~~~i~~i~~~~~~~~PilGIClGh 273 (382)
T CHL00197 247 SAIHYGIKTVKKLLKYNIPIFGICMGH 273 (382)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEcHHH
Confidence 223343434579999999983
No 286
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=25.99 E-value=4.3e+02 Score=27.38 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=37.2
Q ss_pred CCccEEEEEcCc----hHHHHHHHhcCCCCCcEEEEeCC-----CcccccCCCcccHHHHHHHHHc
Q 002705 754 ERVDFVACLGGD----GVILHASNLFRGAVPPVISFNLG-----SLGFLTSHPFEDYRQDLRQVIY 810 (890)
Q Consensus 754 e~~DlVIvLGGD----GTlL~Aar~~~~~~~PILGIN~G-----~LGFLte~~~ed~~~~L~~Il~ 810 (890)
.++|+||.+|=+ -.+|++.+.|. .+-.+.+.-. ..-| +++..+++.+.|++++.
T Consensus 99 g~~DlvlfvG~~~y~~~~~ls~lk~f~--~~~~i~l~~~y~pnA~~Sf-~n~~~~~~~~~l~~~~~ 161 (162)
T TIGR00315 99 GNYDLVLFLGIIYYYLSQMLSSLKHFS--HIVTIAIDKYYQPNADYSF-PNLSKDEYLDYLRKLLA 161 (162)
T ss_pred CCcCEEEEeCCcchHHHHHHHHHHhhc--CcEEEEecCCCCCCCceec-cccCHHHHHHHHHHHhc
Confidence 689999999998 56788888887 4556666521 2222 22346778888888765
No 287
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=25.81 E-value=5.3e+02 Score=32.02 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=55.4
Q ss_pred ccEEEcCC-C-----CHhhHHHHHHcCCcEEEE--cCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHH
Q 002705 267 VTFCRGGQ-V-----TEEGLKWLMEKGYKTIVD--IRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKF 338 (890)
Q Consensus 267 ~~LYRSgq-p-----T~eDl~~L~~lGIKTVID--LRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af 338 (890)
..+||-.. + ....++..++.|...... +.........+.....+.+...|+..+.|.=. ....++.++.++
T Consensus 110 idv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDt-aG~l~P~~v~~l 188 (596)
T PRK14042 110 VDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDM-AGLLTPTVTVEL 188 (596)
T ss_pred CCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCc-ccCCCHHHHHHH
Confidence 45666652 2 234577788888877766 43332111111122334456689988777765 445678888888
Q ss_pred HHHHhcCCCCcEEEeCccCC
Q 002705 339 ASLVSNSSKKPLYLHSKEGV 358 (890)
Q Consensus 339 ~~iL~d~~~~PVLVHCtAGK 358 (890)
+..+.+..+-||-+||+.-.
T Consensus 189 v~alk~~~~ipi~~H~Hnt~ 208 (596)
T PRK14042 189 YAGLKQATGLPVHLHSHSTS 208 (596)
T ss_pred HHHHHhhcCCEEEEEeCCCC
Confidence 77776555678888776544
No 288
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=25.63 E-value=33 Score=33.95 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=24.1
Q ss_pred ccccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEE
Q 002705 749 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISF 785 (890)
Q Consensus 749 ~~el~e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGI 785 (890)
..++...+|+||+=||=||+..++. .++|.+-|
T Consensus 66 m~~~m~~aDlvIs~aG~~Ti~E~l~----~g~P~I~i 98 (167)
T PF04101_consen 66 MAELMAAADLVISHAGAGTIAEALA----LGKPAIVI 98 (167)
T ss_dssp HHHHHHHHSEEEECS-CHHHHHHHH----CT--EEEE
T ss_pred HHHHHHHcCEEEeCCCccHHHHHHH----cCCCeecc
Confidence 3455668999999999999999987 46787765
No 289
>PRK11249 katE hydroperoxidase II; Provisional
Probab=25.58 E-value=2.3e+02 Score=36.03 Aligned_cols=99 Identities=12% Similarity=-0.023 Sum_probs=54.7
Q ss_pred cccCCCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCcccc-CCCccEEEEEc
Q 002705 685 MWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLG 763 (890)
Q Consensus 685 ~W~~~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~DlVIvLG 763 (890)
.|.-.-++|+|+.-.+-+..+ +..+.+.|.+ .|+.|.+-......+....+. .+.. .....+. ....|.|++.|
T Consensus 592 ~~~~~gRKIaILVaDG~d~~e-v~~~~daL~~-AGa~V~VVSp~~G~V~~s~G~-~I~a--D~t~~~~~Sv~FDAVvVPG 666 (752)
T PRK11249 592 DGDIKGRKVAILLNDGVDAAD-LLAILKALKA-KGVHAKLLYPRMGEVTADDGT-VLPI--AATFAGAPSLTFDAVIVPG 666 (752)
T ss_pred CCCccccEEEEEecCCCCHHH-HHHHHHHHHH-CCCEEEEEECCCCeEECCCCC-EEec--ceeeccCCccCCCEEEECC
Confidence 444466789999987754333 4456777766 476665532211111111111 0100 0111222 22579999999
Q ss_pred Cc---------hHHHHHHHhcCCCCCcEEEEeCC
Q 002705 764 GD---------GVILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 764 GD---------GTlL~Aar~~~~~~~PILGIN~G 788 (890)
|. +-++..++.+.....||.+|..|
T Consensus 667 G~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG 700 (752)
T PRK11249 667 GKANIADLADNGDARYYLLEAYKHLKPIALAGDA 700 (752)
T ss_pred CchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCcc
Confidence 94 34555566666778899988875
No 290
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=25.10 E-value=38 Score=34.26 Aligned_cols=16 Identities=6% Similarity=0.042 Sum_probs=14.0
Q ss_pred ecCeEEEcCCCCCcCC
Q 002705 874 RPVNCFLNVKIFFFNY 889 (890)
Q Consensus 874 rgDGVIVSTPtg~~~~ 889 (890)
.+|||||+||...++|
T Consensus 68 ~AD~iIi~tP~Y~~s~ 83 (174)
T TIGR03566 68 SADLLVVGSPVYRGSY 83 (174)
T ss_pred HCCEEEEECCcCcCcC
Confidence 5799999999988876
No 291
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=24.30 E-value=1.4e+02 Score=34.35 Aligned_cols=88 Identities=11% Similarity=0.165 Sum_probs=49.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHHhcCCCeEE--EEcCchhhhhhcCCCCccceeeeccCcccc-CCCcc---EEEEEc
Q 002705 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNI--LVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVD---FVACLG 763 (890)
Q Consensus 690 pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV--~vE~~va~~l~~~p~~~~v~~f~~~~~~el-~e~~D---lVIvLG 763 (890)
.++++||+...-... ...++.+.|.+ .|+++ ++-+.... .|.+..+... ...+ ..++| +||.+|
T Consensus 23 ~~rvlvVtd~~v~~~-~~~~l~~~L~~-~g~~~~~~~~~~~e~----~k~~~~v~~~----~~~~~~~~~dr~~~IIAvG 92 (355)
T cd08197 23 ADKYLLVTDSNVEDL-YGHRLLEYLRE-AGAPVELLSVPSGEE----HKTLSTLSDL----VERALALGATRRSVIVALG 92 (355)
T ss_pred CCeEEEEECccHHHH-HHHHHHHHHHh-cCCceEEEEeCCCCC----CCCHHHHHHH----HHHHHHcCCCCCcEEEEEC
Confidence 478999987653222 56778888876 35543 22111100 0000000000 0011 12344 999999
Q ss_pred CchHHHHHHHhcC---CCCCcEEEEeCC
Q 002705 764 GDGVILHASNLFR---GAVPPVISFNLG 788 (890)
Q Consensus 764 GDGTlL~Aar~~~---~~~~PILGIN~G 788 (890)
| |+++-++..++ ..++|++-|-+.
T Consensus 93 G-Gsv~D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 93 G-GVVGNIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred C-cHHHHHHHHHHHHhccCCCEEEecCc
Confidence 8 88888887754 247899998884
No 292
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=24.17 E-value=75 Score=25.69 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=27.4
Q ss_pred CCCccEEEEEcCchHHHH---------HHHhcCCCCCcEEEEeCCCc
Q 002705 753 HERVDFVACLGGDGVILH---------ASNLFRGAVPPVISFNLGSL 790 (890)
Q Consensus 753 ~e~~DlVIvLGGDGTlL~---------Aar~~~~~~~PILGIN~G~L 790 (890)
..+.|.+|+.||.++... ....+.....||+|+..|..
T Consensus 44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~ 90 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQ 90 (92)
T ss_pred cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccc
Confidence 457899999999887733 34444445789999988853
No 293
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=24.01 E-value=35 Score=34.39 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCchHHH-----HHHHhcCCCCCcEEEEeCC
Q 002705 753 HERVDFVACLGGDGVIL-----HASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 753 ~e~~DlVIvLGGDGTlL-----~Aar~~~~~~~PILGIN~G 788 (890)
..++|.||.-||.+... ...+.+....+|||||-+|
T Consensus 39 ~~~~dgvIl~Gg~~~~~~~~~~~~~~~~~~~~~PilGIC~G 79 (181)
T cd01742 39 LKNPKGIILSGGPSSVYEEDAPRVDPEIFELGVPVLGICYG 79 (181)
T ss_pred ccCCCEEEECCCcccccccccchhhHHHHhcCCCEEEEcHH
Confidence 35689999999976542 2234444568999999998
No 294
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=23.92 E-value=2.4e+02 Score=27.82 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=27.4
Q ss_pred CccEEEEEcCch--------HHHHHHHhcCCCCCcEEEEeCCCc
Q 002705 755 RVDFVACLGGDG--------VILHASNLFRGAVPPVISFNLGSL 790 (890)
Q Consensus 755 ~~DlVIvLGGDG--------TlL~Aar~~~~~~~PILGIN~G~L 790 (890)
+.|.+++.||.+ .++..++.+.....||.+|-.|..
T Consensus 62 ~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~ 105 (165)
T cd03134 62 DYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPW 105 (165)
T ss_pred HCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHH
Confidence 579999999953 345556666678899999998743
No 295
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=23.82 E-value=18 Score=33.21 Aligned_cols=18 Identities=50% Similarity=1.053 Sum_probs=13.1
Q ss_pred CCCCCCcc----------CCCCCchHHH
Q 002705 77 DPSQLPWI----------GPVPGDIAEV 94 (890)
Q Consensus 77 ~~~~~~~~----------~~~~~~~~~~ 94 (890)
.+.||||| |-.||||.++
T Consensus 36 ~~~qLPkI~~~DPva~~lgak~GdvVkI 63 (80)
T COG2012 36 EPEQLPKIKASDPVAKALGAKPGDVVKI 63 (80)
T ss_pred CHHHCCcccccChhHHHccCCCCcEEEE
Confidence 35688886 7789997653
No 296
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=23.39 E-value=5.1e+02 Score=28.25 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=47.6
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC---CcEEEeCcc
Q 002705 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK---KPLYLHSKE 356 (890)
Q Consensus 280 l~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~---~PVLVHCtA 356 (890)
++..+++|++..+++-....-.+.+.....+.+...|+..+.++=. ....+|+++..+++.+....+ -|+-+||+-
T Consensus 120 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn 198 (268)
T cd07940 120 VEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDT-VGYLTPEEFGELIKKLKENVPNIKVPISVHCHN 198 (268)
T ss_pred HHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCC-CCCCCHHHHHHHHHHHHHhCCCCceeEEEEecC
Confidence 4566678998777764332111111112223445678888777766 455788898888887764433 577777776
Q ss_pred CC
Q 002705 357 GV 358 (890)
Q Consensus 357 GK 358 (890)
-.
T Consensus 199 ~~ 200 (268)
T cd07940 199 DL 200 (268)
T ss_pred Cc
Confidence 55
No 297
>PRK09389 (R)-citramalate synthase; Provisional
Probab=23.15 E-value=4.8e+02 Score=31.47 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=52.3
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002705 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (890)
Q Consensus 279 Dl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHCtAGK 358 (890)
-++++++.|.+..+++-+....++.+.....+.+...|...+.+|=. .....|.++..+++.+.+..+-|+=+||+--.
T Consensus 119 ~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-vG~~~P~~~~~lv~~l~~~~~v~l~~H~HND~ 197 (488)
T PRK09389 119 AVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDT-VGILTPEKTYELFKRLSELVKGPVSIHCHNDF 197 (488)
T ss_pred HHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecC-CCCcCHHHHHHHHHHHHhhcCCeEEEEecCCc
Confidence 35667778998888874432112222222234456689999999877 45677888888877775555678999998665
No 298
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=23.09 E-value=42 Score=34.34 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=24.6
Q ss_pred ccEEEEEcCchH-----HHHHHHhcCCCCCcEEEEeCC
Q 002705 756 VDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 756 ~DlVIvLGGDGT-----lL~Aar~~~~~~~PILGIN~G 788 (890)
+|.||..||.+. .....+.+...++|||||-+|
T Consensus 42 ~~glii~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G 79 (188)
T TIGR00888 42 PKGIILSGGPSSVYAENAPRADEKIFELGVPVLGICYG 79 (188)
T ss_pred CCEEEECCCCCCcCcCCchHHHHHHHhCCCCEEEECHH
Confidence 468999998765 334555555678999999998
No 299
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=22.84 E-value=44 Score=34.87 Aligned_cols=16 Identities=0% Similarity=0.175 Sum_probs=13.1
Q ss_pred ecCeEEEcCCCCCcCC
Q 002705 874 RPVNCFLNVKIFFFNY 889 (890)
Q Consensus 874 rgDGVIVSTPtg~~~~ 889 (890)
++|||||+||.+.+.|
T Consensus 66 ~AD~iIi~tP~Y~~s~ 81 (191)
T PRK10569 66 QADGLIVATPVYKASF 81 (191)
T ss_pred HCCEEEEECCccCCCC
Confidence 4789999999888776
No 300
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=22.77 E-value=5.4e+02 Score=29.55 Aligned_cols=79 Identities=8% Similarity=0.081 Sum_probs=50.4
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002705 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (890)
Q Consensus 279 Dl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHCtAGK 358 (890)
-++..++.|++..+++-......+.+.....+.+...|+..+.++=. ....+|+++..+++.+.+..+-|+=+||+--.
T Consensus 118 ~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~ 196 (365)
T TIGR02660 118 LVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADT-VGILDPFSTYELVRALRQAVDLPLEMHAHNDL 196 (365)
T ss_pred HHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccc-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 35566678998777764332111222222233456689998888876 45678888888888776544568888887555
No 301
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.77 E-value=2.9e+02 Score=30.48 Aligned_cols=80 Identities=14% Similarity=0.052 Sum_probs=50.0
Q ss_pred hhHHHHHHcCCcEEEEcCCC--cccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 002705 278 EGLKWLMEKGYKTIVDIRAE--RVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 355 (890)
Q Consensus 278 eDl~~L~~lGIKTVIDLRse--~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHCt 355 (890)
+-++..+++|++.++++-.. ..-.+.+.....+.+...|+..+.++=. ....+|+++..+++.+....+.|+-+||+
T Consensus 122 ~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~H 200 (275)
T cd07937 122 VAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDM-AGLLTPYAAYELVKALKKEVGLPIHLHTH 200 (275)
T ss_pred HHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC-CCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 34667778898888766321 1011111112233456678998888755 45667889888888876544578888876
Q ss_pred cCC
Q 002705 356 EGV 358 (890)
Q Consensus 356 AGK 358 (890)
--.
T Consensus 201 nd~ 203 (275)
T cd07937 201 DTS 203 (275)
T ss_pred CCC
Confidence 555
No 302
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=22.73 E-value=3.3e+02 Score=33.71 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=50.9
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecC---------CCCCCCHHHHHHHHHHHhcC
Q 002705 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVE---------VRTAPTMEQVEKFASLVSNS 345 (890)
Q Consensus 275 pT~eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~---------d~~~ps~E~v~af~~iL~d~ 345 (890)
++.+++..+.+.+=-.|||.|+.+ + |. .-...|.. ++|+. ....|+.+++++.+.-+--.
T Consensus 11 Is~~eL~~~l~~~~vvIIDvR~~~-e---Y~-----~GHIPGAv--~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~ 79 (610)
T PRK09629 11 IEPNDLLERLDAPELILVDLTSSA-R---YE-----AGHIRGAR--FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHN 79 (610)
T ss_pred ecHHHHHHHhcCCCEEEEECCChH-H---HH-----hCCCCCcE--EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 577788777665434699999854 1 21 01223333 33321 12235567777766655334
Q ss_pred CCCcEEEeCccCCChHHHHHHHHHHhCCC
Q 002705 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (890)
Q Consensus 346 ~~~PVLVHCtAGKDRTGalvaLlr~~lGv 374 (890)
.+.||+|.|..|..+++-++-++ .++|.
T Consensus 80 ~d~~VVvYd~~g~~~A~R~~w~L-~~~G~ 107 (610)
T PRK09629 80 PDAVYVVYDDEGGGWAGRFIWLL-DVIGH 107 (610)
T ss_pred CCCEEEEECCCCCchHHHHHHHH-HHcCC
Confidence 57899999999875666444333 44674
No 303
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.55 E-value=2.4e+02 Score=29.80 Aligned_cols=35 Identities=23% Similarity=0.155 Sum_probs=21.9
Q ss_pred CCccEEEEEcCch--HH---HH------HHHh-cCCCCCcEEEEeCC
Q 002705 754 ERVDFVACLGGDG--VI---LH------ASNL-FRGAVPPVISFNLG 788 (890)
Q Consensus 754 e~~DlVIvLGGDG--Tl---L~------Aar~-~~~~~~PILGIN~G 788 (890)
+++|.||+-||-- |. |. +... ......||+||-+|
T Consensus 40 ~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G 86 (209)
T PRK13146 40 AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVG 86 (209)
T ss_pred cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHH
Confidence 5789998888621 22 11 2222 22367999999988
No 304
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=22.53 E-value=1.8e+02 Score=30.39 Aligned_cols=88 Identities=13% Similarity=-0.027 Sum_probs=47.0
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHH
Q 002705 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (890)
Q Consensus 689 ~pkkVlIV~K~~~ea~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTl 768 (890)
...+|++|.-....-.+......+.+.+ .|+++..-..+.. .. .....+....+|.|++-|||=..
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~-lG~~~~~~~~~~~-----~~--------~~~~~~~l~~ad~I~~~GG~~~~ 93 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFER-LGVEVVHLLLIDT-----AN--------DPDVVARLLEADGIFVGGGNQLR 93 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHH-cCCceEEEeccCC-----CC--------CHHHHHHHhhCCEEEEcCCcHHH
Confidence 3557888865543223334555566654 3654431111100 00 00112334679999999998544
Q ss_pred HH----------HHHhcCCCCCcEEEEeCCCc
Q 002705 769 LH----------ASNLFRGAVPPVISFNLGSL 790 (890)
Q Consensus 769 L~----------Aar~~~~~~~PILGIN~G~L 790 (890)
|. +.+.....+.|++|++.|..
T Consensus 94 ~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~ 125 (210)
T cd03129 94 LLSVLRETPLLDAILKRVARGVVIGGTSAGAA 125 (210)
T ss_pred HHHHHHhCChHHHHHHHHHcCCeEEEcCHHHH
Confidence 33 32322235889999999744
No 305
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=22.18 E-value=42 Score=35.05 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=14.8
Q ss_pred EecCeEEEcCCCCCcCC
Q 002705 873 VRPVNCFLNVKIFFFNY 889 (890)
Q Consensus 873 ~rgDGVIVSTPtg~~~~ 889 (890)
..+||||++||+-++|+
T Consensus 74 ~~aD~iI~gsPvy~g~v 90 (207)
T COG0655 74 LEADGIIFGSPVYFGNV 90 (207)
T ss_pred HHCCEEEEeCCeecCCc
Confidence 36899999999999886
No 306
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=21.97 E-value=6.3e+02 Score=29.05 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=51.9
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccC
Q 002705 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEG 357 (890)
Q Consensus 278 eDl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHCtAG 357 (890)
+-++..++.|++..+++-......+.+.....+.+...|+..+.++=. ....+|+++..+++.+.+..+-|+-+||+--
T Consensus 116 ~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT-~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd 194 (363)
T TIGR02090 116 EAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADT-VGVLTPQKMEELIKKLKENVKLPISVHCHND 194 (363)
T ss_pred HHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCC-CCccCHHHHHHHHHHHhcccCceEEEEecCC
Confidence 345667788999888874432111112112223456678988888876 4567899999888887655457788888765
Q ss_pred C
Q 002705 358 V 358 (890)
Q Consensus 358 K 358 (890)
.
T Consensus 195 ~ 195 (363)
T TIGR02090 195 F 195 (363)
T ss_pred C
Confidence 5
No 307
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=21.71 E-value=2.4e+02 Score=28.61 Aligned_cols=84 Identities=12% Similarity=-0.052 Sum_probs=50.2
Q ss_pred EEEEecCC-hh-HHHHHHHHHHHHhcCCCeEEEEcCchhhhhhcCCCCccceeeeccCccccCCCccEEEEEcCchHHHH
Q 002705 693 VLVLKKPG-PA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (890)
Q Consensus 693 VlIV~K~~-~e-a~e~a~eL~~~L~~~~gieV~vE~~va~~l~~~p~~~~v~~f~~~~~~el~e~~DlVIvLGGDGTlL~ 770 (890)
|+++.... .+ .......+.+.+.+ .|+++.+...-.+. .. ... .-..-+..++|.+|+.+.|.+-+.
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~-~~-----~~~----~~~~~~~~~~d~iii~~~~~~~~~ 70 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAARE-AGYSVLLCNSDEDP-EK-----ERE----ALELLLSRRVDGIILAPSRLDDEL 70 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHH-cCCEEEEEcCCCCH-HH-----HHH----HHHHHHHcCcCEEEEecCCcchHH
Confidence 45555432 23 44555677777765 57777654331110 00 000 000112457999999999998877
Q ss_pred HHHhcCCCCCcEEEEeCC
Q 002705 771 ASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 771 Aar~~~~~~~PILGIN~G 788 (890)
.+.+...++|++.++..
T Consensus 71 -~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 71 -LEELAALGIPVVLVDRP 87 (264)
T ss_pred -HHHHHHcCCCEEEeccc
Confidence 77777789999999875
No 308
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=21.56 E-value=3.8e+02 Score=28.22 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=47.4
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC-CcEEEeCccC
Q 002705 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK-KPLYLHSKEG 357 (890)
Q Consensus 279 Dl~~L~~lGIKTVIDLRse~~ee~~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~-~PVLVHCtAG 357 (890)
-+++.+++|++..+++-....-.+.+.....+.+...|+..+.++=. ....+|+++..+++.+....+ .|+=+||+--
T Consensus 113 ~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd 191 (237)
T PF00682_consen 113 AVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADT-VGIMTPEDVAELVRALREALPDIPLGFHAHND 191 (237)
T ss_dssp HHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEET-TS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBT
T ss_pred HHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCc-cCCcCHHHHHHHHHHHHHhccCCeEEEEecCC
Confidence 35667788999999985543111112122234455568888888866 456678888888877764333 6776666553
Q ss_pred C
Q 002705 358 V 358 (890)
Q Consensus 358 K 358 (890)
-
T Consensus 192 ~ 192 (237)
T PF00682_consen 192 L 192 (237)
T ss_dssp T
T ss_pred c
Confidence 3
No 309
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=21.56 E-value=1.4e+02 Score=30.78 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=21.9
Q ss_pred CccEEEEEcCchH-----------HHHHHHhcCCCCCcEEEEeCC
Q 002705 755 RVDFVACLGGDGV-----------ILHASNLFRGAVPPVISFNLG 788 (890)
Q Consensus 755 ~~DlVIvLGGDGT-----------lL~Aar~~~~~~~PILGIN~G 788 (890)
++|.||.-||..+ +....+.+...++|||||-.|
T Consensus 36 ~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G 80 (198)
T cd01748 36 SADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLG 80 (198)
T ss_pred cCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHH
Confidence 5788877554211 234445555568999999887
No 310
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=20.57 E-value=1.3e+02 Score=33.77 Aligned_cols=59 Identities=22% Similarity=0.149 Sum_probs=41.3
Q ss_pred ccccCCCccEEEEEcCchHHHHHHHhcCCCCCcEEEEeCC-----------C--cccccC---CCcccHHHHHHHHHcC
Q 002705 749 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG-----------S--LGFLTS---HPFEDYRQDLRQVIYG 811 (890)
Q Consensus 749 ~~el~e~~DlVIvLGGDGTlL~Aar~~~~~~~PILGIN~G-----------~--LGFLte---~~~ed~~~~L~~Il~G 811 (890)
..++...+|++|+=||=||+..++. .++|++.+-.+ . .|...+ ++.+++.+.+.+++..
T Consensus 298 ~~~ll~~~d~~I~hgG~~t~~eal~----~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~ 372 (401)
T cd03784 298 HDWLLPRCAAVVHHGGAGTTAAALR----AGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP 372 (401)
T ss_pred HHHHhhhhheeeecCCchhHHHHHH----cCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH
Confidence 4456678999999999999999975 57898888442 1 233222 3556677777777653
No 311
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=20.34 E-value=4.2e+02 Score=27.78 Aligned_cols=52 Identities=25% Similarity=0.226 Sum_probs=36.3
Q ss_pred CCccEEEEEcCc----hHHHHHHHhcCCCCCcEEEEeCC-------CcccccCCCcccHHHHHHHHHc
Q 002705 754 ERVDFVACLGGD----GVILHASNLFRGAVPPVISFNLG-------SLGFLTSHPFEDYRQDLRQVIY 810 (890)
Q Consensus 754 e~~DlVIvLGGD----GTlL~Aar~~~~~~~PILGIN~G-------~LGFLte~~~ed~~~~L~~Il~ 810 (890)
.++|+||.+|=+ -.+|++.+.|.+ +-.+.|.-. +++++ +.+++.+.|++++.
T Consensus 107 ~~~DlvlfvG~~~~~~~~~l~~lk~f~~--~~~~~~~~~y~~~a~~s~~~~---~~~~~~~~l~~li~ 169 (171)
T PRK00945 107 GNYDLVIFIGVTYYYASQGLSALKHFSP--LKTITIDRYYHPNADMSFPNL---SKEEYLEYLDELID 169 (171)
T ss_pred CCcCEEEEecCCchhHHHHHHHHhhcCC--ceEEEecCCcCCCCceecCCC---CHHHHHHHHHHHHh
Confidence 579999999998 567788887774 444454431 22333 57888899988875
No 312
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=20.19 E-value=6e+02 Score=27.98 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=48.1
Q ss_pred HHHHHHcCCcEEEEcCCCcccCc-chhhhhHhhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002705 280 LKWLMEKGYKTIVDIRAERVKDN-FYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (890)
Q Consensus 280 l~~L~~lGIKTVIDLRse~~ee~-~~~a~e~~~~e~~GI~yVhIPV~d~~~ps~E~v~af~~iL~d~~~~PVLVHCtAGK 358 (890)
++..++.|++..+++-... ..+ .......+.+...|+..+.++=. ....+|+++..++..+....+.|+-+||+--.
T Consensus 118 i~~a~~~G~~v~~~~eda~-r~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~ 195 (262)
T cd07948 118 IEFVKSKGIEVRFSSEDSF-RSDLVDLLRVYRAVDKLGVNRVGIADT-VGIATPRQVYELVRTLRGVVSCDIEFHGHNDT 195 (262)
T ss_pred HHHHHHCCCeEEEEEEeeC-CCCHHHHHHHHHHHHHcCCCEEEECCc-CCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 3555677999999884332 111 11112223456678888777766 45678999998888876554577777666444
Done!