RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 002705
(890 letters)
>gnl|CDD|215386 PLN02727, PLN02727, NAD kinase.
Length = 986
Score = 1413 bits (3658), Expect = 0.0
Identities = 607/884 (68%), Positives = 694/884 (78%), Gaps = 38/884 (4%)
Query: 7 MQRLSSPATGIL----CSSKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSF 62
M RLS P TGIL CS KL N++ KL GFGF F +R E ++RR+K VVSAELSKSF
Sbjct: 1 MARLS-PVTGILSSCLCSVKL-NSDGKLLGFGFGF--WQRKEPLKRRLKFVVSAELSKSF 56
Query: 63 SLNLGLDSQVIQSNDPSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGE 122
S NLGLDSQ QS D SQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGE
Sbjct: 57 SSNLGLDSQNFQSRDLSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGE 116
Query: 123 CTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVADISMTEDQL 182
C VSY+FT EEKPLLEDKIVSVLGCMLSLLNKGRE+VLSGRSSIM+++R +++S ED+L
Sbjct: 117 CPVSYDFTSEEKPLLEDKIVSVLGCMLSLLNKGREEVLSGRSSIMSSFRGSEVSAMEDKL 176
Query: 183 PPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIH 242
PPLAIFR EMKRCCES+H+ALENYLTP+D RSLDVWRKLQRLKNVCYD+GFPR DDYP H
Sbjct: 177 PPLAIFRGEMKRCCESLHVALENYLTPDDDRSLDVWRKLQRLKNVCYDAGFPRSDDYPCH 236
Query: 243 TLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDN 302
TLFANW+PVYLS SK+DI SK+SE F RGGQVTEEGLKWL+EKG+KTIVD+RAE VKDN
Sbjct: 237 TLFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDN 296
Query: 303 FYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTY 362
FY+AA+DDAI SGK+E++KIPVEVRTAP+ EQVEKFASLVS+SSKKP+YLHSKEGVWRT
Sbjct: 297 FYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTS 356
Query: 363 AMVSRWRQYMARCASQISGQTITSNDVLLKDSTRTRKLKASAGKFLLEEKYETVKENQDE 422
AMVSRW+QYM R A ++ GQ N G L+++ +++E D+
Sbjct: 357 AMVSRWKQYMTRSAERLLGQNSVVN-----------------GNGKLDQETGSLQETNDK 399
Query: 423 IQTKNGVF-GFGLSVDMDKRNQSNGAYKGLSSVEGVESAKEVDTAVGSLGTTFSKETDPF 481
+ NG G S+ + + AY L S + + + V T V S + F+ E+DP
Sbjct: 400 DSSSNGSESGESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVGTGVESQ-SNFNMESDPL 458
Query: 482 KAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLP----------SEIVSSGPV 531
KAQVPP + SKKEMS+FFRSK PP Y NY+ K + LP S+I + +
Sbjct: 459 KAQVPPCDVFSKKEMSKFFRSKKIYPPTYLNYRRKGFEKLPVPQFTGVTQGSKIDDTDSI 518
Query: 532 SGVAETRYSQWSLSGNNLSPNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEAN 591
S + ET S +S N SP +Q+ + KSS+ + + S G + + +
Sbjct: 519 SRLVETGRSNGLVSEKNSSPKYQSSEFDNGKSSNGSSFASDGSLSVASSITNGNPSNNGA 578
Query: 592 LLTSVTKNLDEQVISSSVRDVQRSNGK-PSNSGDDDLGPIVGNMCASSTGVVRVQSRKKA 650
++V+ NL+ V S SVR+ QRSNGK S DD+LG I GNMCAS+TGVVRVQSR+KA
Sbjct: 579 SSSTVSDNLERSVASVSVRESQRSNGKASLGSSDDELGAIEGNMCASATGVVRVQSRRKA 638
Query: 651 EMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEV 710
EMFLVRTDGFSC REKVTESSLAFTHPSTQQQMLMWK+TP+TVL+LKK G LMEEAKEV
Sbjct: 639 EMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQELMEEAKEV 698
Query: 711 ASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770
ASFLYHQEKMN+LVEPDVHDIFARIPGFGFVQTFY QDTSDLHERVDFVACLGGDGVILH
Sbjct: 699 ASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILH 758
Query: 771 ASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEI 830
ASNLFRGAVPPV+SFNLGSLGFLTSH FED+RQDLRQVI+GNNTLDGVYITLRMRL CEI
Sbjct: 759 ASNLFRGAVPPVVSFNLGSLGFLTSHYFEDFRQDLRQVIHGNNTLDGVYITLRMRLRCEI 818
Query: 831 FRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVR 874
FRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKV+
Sbjct: 819 FRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQ 862
>gnl|CDD|215505 PLN02935, PLN02935, Bifunctional NADH kinase/NAD(+) kinase.
Length = 508
Score = 159 bits (404), Expect = 1e-41
Identities = 77/203 (37%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 678 STQQQMLMWKTTPRTVLVLKKP-GPALMEEAKEVASFLYHQEKMNILVEPDVH-DIFARI 735
S++Q L W++ P+TVL++ KP ++ E+ +L Q+ +NI VEP V ++ +
Sbjct: 182 SSKQISLKWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSES 241
Query: 736 PGFGFVQTFYL-QDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLT 794
F FVQT+ ++ LH +VD V LGGDG +L A+++F+G VPPV+ F++GSLGF+T
Sbjct: 242 SYFNFVQTWEDEKEILLLHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMT 301
Query: 795 SHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNG---KAMPGKVFDVLNEVVVD 851
E YR L ++ G + ITLR RL C I R+ + + VLNEV +D
Sbjct: 302 PFHSEQYRDCLDAILKGP-----ISITLRHRLQCHIIRDAAKNEYETEEPILVLNEVTID 356
Query: 852 RGSNPYLSKIECYEHDRLITKVR 874
RG + +L+ +ECY + +T V+
Sbjct: 357 RGISSFLTNLECYCDNSFVTCVQ 379
>gnl|CDD|223139 COG0061, nadF, NAD kinase [Coenzyme metabolism].
Length = 281
Score = 89.3 bits (222), Expect = 2e-19
Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTS 750
+ +V + P ++ AK + FL + + + V+ ++ + +
Sbjct: 2 KVGIVGRPDKPEALKIAKRLYEFL-KFKGVTVEVDQELAEELKDFADYVDDDE------- 53
Query: 751 DLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIY 810
E+ D + LGGDG +L A+ L PV+ NLG LGFLT ++ + L ++
Sbjct: 54 ---EKADLIVVLGGDGTLLRAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALDALLE 110
Query: 811 GNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLI 870
G I R+ L + R + LNEVV+ RGS + + E Y D
Sbjct: 111 GEYR-----IEERLLLEVSVNRGDI----RRALALNEVVIHRGSPAKMIEFEVYIDDEFF 161
Query: 871 TKVR 874
R
Sbjct: 162 ESFR 165
>gnl|CDD|216543 pfam01513, NAD_kinase, ATP-NAD kinase. Members of this family
include ATP-NAD kinases EC:2.7.1.23, which catalyzes the
phosphorylation of NAD to NADP utilising ATP and other
nucleoside triphosphates as well as inorganic
polyphosphate as a source of phosphorus. Also includes
NADH kinases EC:2.7.1.86.
Length = 243
Score = 83.9 bits (208), Expect = 6e-18
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 752 LHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYG 811
+ E VD + LGGDG L A+ L P++ N G+LGFLT E+ + L ++ G
Sbjct: 32 VEEGVDLIVVLGGDGTALDAARLLGDHDIPILGINTGTLGFLTEFSPEEAAKLLDALLEG 91
Query: 812 NNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLIT 871
I R L + R+ + + V LNEVV+ G + +IE Y L+
Sbjct: 92 E-----YKIEKRELLDVIVRRSKRLLI--VDLALNEVVIIGGPASTMIEIEVYIDGELLE 144
Query: 872 KVR 874
+R
Sbjct: 145 SIR 147
>gnl|CDD|237601 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 569
Score = 67.4 bits (165), Expect = 2e-11
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNN 813
E + + +GGDG +L AS L G P+I N+G++GFLT E+ + + +I G
Sbjct: 347 EEISHIISIGGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKEEIFKAIDSIISGE- 405
Query: 814 TLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKI---ECYEHDRLI 870
I R +L I ++G + LNEVV+ NP +K+ E Y + L+
Sbjct: 406 ----YEIEKRTKLSGFILKDGHQN--ILPSALNEVVITT-KNP--AKMLHFEVYVNGELV 456
Query: 871 TKVR 874
+VR
Sbjct: 457 EEVR 460
>gnl|CDD|179257 PRK01231, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 295
Score = 62.3 bits (152), Expect = 3e-10
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
Query: 691 RTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDT 749
R + ++ + G +++E + + FL + IL E + +PG G +QT
Sbjct: 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDE----ETAEVLPGHG-LQTV---SR 56
Query: 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVI 809
L E D V +GGDG +L A+ PV+ N G LGFLT ++ L +V
Sbjct: 57 KLLGEVCDLVIVVGGDGSLLGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEV- 115
Query: 810 YGNNTLDGVYIT-LRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECY 864
LDG Y R L E+ R G+ + D LN+VV+ G + + + E Y
Sbjct: 116 -----LDGHYQEEERFLLEAEVRRGGEVIGQG--DALNDVVLHPGKSTRMIEFELY 164
>gnl|CDD|179379 PRK02155, ppnK, NAD(+)/NADH kinase family protein; Provisional.
Length = 291
Score = 61.1 bits (149), Expect = 6e-10
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 755 RVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNT 814
R D LGGDG +L P+I N G LGF+T P +D ++ L +
Sbjct: 63 RADLAVVLGGDGTMLGIGRQLAPYGVPLIGINHGRLGFITDIPLDDMQETLPPM------ 116
Query: 815 LDGVYIT-LRMRLCCEIFRNGKAMPGKVFDVL--NEVVVDRGSN 855
L G Y RM L + R+G+ +F L N+VVV+R
Sbjct: 117 LAGNYEEEERMLLEARVVRDGEP----IFHALAFNDVVVNRSGF 156
>gnl|CDD|179635 PRK03708, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 277
Score = 60.5 bits (147), Expect = 7e-10
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 748 DTSDLHE-RVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLR 806
D L E VDF+ +GGDG IL + + + P++ N+G+LGFLT E+ L
Sbjct: 49 DVLPLEEMDVDFIIAIGGDGTILRIEHKTKKDI-PILGINMGTLGFLTEVEPEETFFALS 107
Query: 807 QVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEH 866
+++ G+ +I R++L ++ NG+ +P D LNEVV+ G + ++ Y
Sbjct: 108 RLLEGD-----YFIDERIKL--RVYINGENVP----DALNEVVILTGIPGKIIHLKYYVD 156
Query: 867 DRLITKVR 874
L +VR
Sbjct: 157 GELADEVR 164
>gnl|CDD|235121 PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 306
Score = 57.2 bits (139), Expect = 1e-08
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 15/172 (8%)
Query: 688 TTPRTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILV---EPDVHDIFARIPGFGFVQT 743
T R VL++ G E A+ VA L I V + + D+ A P +
Sbjct: 3 TASRRVLLVAHTGRDEATEAARRVAKQL---GDAGIGVRVLDAEAVDLGATHPAPDDFRA 59
Query: 744 FY-LQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYR 802
+ D + + V LGGDG IL A+ L R A PV+ NLG +GFL ED
Sbjct: 60 MEVVDADPDAADGCELVLVLGGDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLD 119
Query: 803 QDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGS 854
+ + +V+ + ++ RM L + G+ + + LNE +++
Sbjct: 120 EAVERVVDRDYRVEE-----RMTLDVTVRVGGEI-VWRGW-ALNEASLEKAD 164
>gnl|CDD|179455 PRK02645, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 305
Score = 55.3 bits (134), Expect = 5e-08
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG-SLGFLTSHPFEDYRQDLRQVIYGN 812
E +D LGGDG +L A+ P++S N+G LGFLT HP + + + V +
Sbjct: 56 ELIDLAIVLGGDGTVLAAARHLAPHDIPILSVNVGGHLGFLT-HPRDLLQDE--SVW--D 110
Query: 813 NTLDGVY-ITLRMRLCCEIFRNGKAMPGKV---FDVLNE 847
+ Y I RM L +F ++ V + LN+
Sbjct: 111 RLQEDRYAIERRMMLQARVFEGDRSNEEPVSESYYALND 149
>gnl|CDD|179862 PRK04539, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 296
Score = 53.3 bits (128), Expect = 2e-07
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 742 QTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDY 801
++ + ++L + D VA LGGDG L + P+I N G LGFLT P E
Sbjct: 55 VGCHIVNKTELGQYCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYM 114
Query: 802 RQDLRQVIYGNNTLDGVYITL-RMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGS 854
L V L+G Y+ R+ + + R GK + LN+ V+ RG
Sbjct: 115 TDKLLPV------LEGKYLAEERILIEAALIREGKTAERAL--ALNDAVLSRGG 160
>gnl|CDD|179241 PRK01185, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 271
Score = 49.0 bits (117), Expect = 5e-06
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 756 VDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTL 815
D + +GGDG IL +G P++ N+G LGFLT ++ ++++I G
Sbjct: 53 ADVIITIGGDGTILRTLQRAKG---PILGINMGGLGFLTEIEIDEVGSAIKKLIRGEYF- 108
Query: 816 DGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVR 874
I RM+L I NG+ ++ D NE V+ + + + Y + +
Sbjct: 109 ----IDERMKLKVYI--NGE----RLEDCTNEAVIHTDRIAKIRQFKIYYDGHFLDTFK 157
>gnl|CDD|235122 PRK03378, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 292
Score = 46.9 bits (112), Expect = 2e-05
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 14/125 (11%)
Query: 749 TSDLHE---RVDFVACLGGDGVILHASN-LFRGAVPPVISFNLGSLGFLTSHPFEDYRQD 804
T L E + D +GGDG +L A+ L R + VI N G+LGFLT ++ Q
Sbjct: 54 TGTLAEIGQQADLAIVVGGDGNMLGAARVLARYDIK-VIGINRGNLGFLTDLDPDNALQQ 112
Query: 805 LRQVIYGNNTLDGVYIT-LRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIEC 863
L V L+G YI+ R L ++ R+G ++ +NEVV+ G ++ + E
Sbjct: 113 LSDV------LEGHYISEKRFLLEAQVCRHG--QQKRISTAINEVVLHPGKVAHMIEFEV 164
Query: 864 YEHDR 868
Y D
Sbjct: 165 YIDDN 169
>gnl|CDD|179352 PRK01911, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 292
Score = 45.7 bits (109), Expect = 6e-05
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 748 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQ 807
D +L D V +GGDG L + + P++ N G LGFL + E+ + + +
Sbjct: 57 DNEELDGSADMVISIGGDGTFLRTATYVGNSNIPILGINTGRLGFLATVSKEEIEETIDE 116
Query: 808 VIYGNNTLD 816
++ G+ T++
Sbjct: 117 LLNGDYTIE 125
>gnl|CDD|184489 PRK14075, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 256
Score = 43.6 bits (103), Expect = 2e-04
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 756 VDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFED---YRQDLRQ 807
D + +GGDG +L A+ P++ F G LGFL+S+ E+ + +DL+
Sbjct: 42 ADLIIVVGGDGTVLKAAKKVGT---PLVGFKAGRLGFLSSYTLEEIDRFLEDLKN 93
>gnl|CDD|179456 PRK02649, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 305
Score = 41.5 bits (98), Expect = 0.001
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 21/106 (19%)
Query: 754 ERVDFVACLGGDGVILHASNLFRGAVP---PVISFNLGSLGFLTSHPFEDYRQDLRQVIY 810
+ F LGGDG +L A R P P+++ N G LGFLT + + QV+
Sbjct: 67 SSMKFAIVLGGDGTVLSA---ARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLA 123
Query: 811 GNNTLDGVYITLRMRLCCEIFRNGK----AMPGKVFDVLNEVVVDR 852
G T++ R L + R + A+ LNE+V+ R
Sbjct: 124 GQYTIE-----ERTMLTVSVMRGDQLRWEAL------SLNEMVLHR 158
>gnl|CDD|179876 PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.
Length = 246
Score = 39.4 bits (93), Expect = 0.004
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNN 813
E D + LGGDG +L + + + PV N GS+GFL + ED DL + I
Sbjct: 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSED---DLLERI--AA 78
Query: 814 TLDGVYITLRMRLCCEIFRNGKAMPGKVFDVL--NEVVVDRGSN 855
V LRM + G+V + L NEV + R +
Sbjct: 79 AEPTVLHPLRMT--------ATDVSGEVHEALAINEVSLFRQTR 114
>gnl|CDD|172567 PRK14077, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 287
Score = 39.8 bits (93), Expect = 0.005
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 682 QMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFV 741
Q + + + ++ +P +L +E ++ L K+ IL+E + +I PG+G
Sbjct: 2 QNKIDHKNIKKIGLVTRPNVSLDKEILKLQKIL-SIYKVEILLEKESAEILDL-PGYG-- 57
Query: 742 QTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLT 794
+L + DF+ LGGDG ++ V+ + G LGFLT
Sbjct: 58 -------LDELFKISDFLISLGGDGTLISLCRKAAEYDKFVLGIHAGHLGFLT 103
>gnl|CDD|167337 PRK02231, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 272
Score = 35.6 bits (82), Expect = 0.080
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 745 YLQDTSDLHERVDFVACLGGDGVIL-HASNLFRGAVPPVISFNLGSLGFLTS-HPFEDYR 802
+L ++ +R +GGDG +L A L + +P +I N G+LGFLT P Y
Sbjct: 32 HLASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIP-LIGINRGNLGFLTDIDPKNAYE 90
Query: 803 QDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 850
Q + G ++ R L +I RNGK + + LNEVV+
Sbjct: 91 QLEACLERGE-----FFVEERFLLEAKIERNGKIIATS--NALNEVVI 131
>gnl|CDD|220976 pfam11091, T4_tail_cap, Tail-tube assembly protein. This tail tube
protein is also referred to as Gp48. It is required for
the assembly and length regulation of the tail tube of
bacteriophage T4.
Length = 348
Score = 34.1 bits (78), Expect = 0.29
Identities = 34/154 (22%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 549 LSPNHQNLPAGSEKS---SDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVI 605
S + +++ G S S + G VS+ NGF R AN+L +K+ D I
Sbjct: 73 TSGSLRSMRQGLSASSILSKSAGSVSS--KFNGFTRTTFDKEAIANILLPRSKS-DVDTI 129
Query: 606 SSSVRDVQRSNGKPSNSGDDDLGPIVGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNRE 665
S DVQ S G I+ N +++ T G +
Sbjct: 130 SHEYNDVQDS---LIAKGGGTGTGILSNAASTAVFGALESI----------TQGIMADSG 176
Query: 666 KV--TESSLAFTHPSTQQQMLMWKTTPRTVLVLK 697
+ S + + + W+ TPR++ LK
Sbjct: 177 EQIYNTSRSMYKGADNRTKTFTWQLTPRSLEDLK 210
>gnl|CDD|225240 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
transduction mechanisms].
Length = 249
Score = 33.6 bits (77), Expect = 0.36
Identities = 33/167 (19%), Positives = 54/167 (32%), Gaps = 30/167 (17%)
Query: 203 LENYLTPEDVRSLDVWRK----LQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKD 258
N+ P D + K L R + S F P+ S
Sbjct: 6 AVNFRDPGDYATTAGRLKKGIKLLR--SAYLASLSLED---NAPLNFLGIIPIIDYRSGQ 60
Query: 259 DIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVE 318
V Q E L L K TI+++R E N D +++
Sbjct: 61 -------PVPV----QPDPELLDALYLK---TIINLRDE---SNTNVELYTDHLINWDKA 103
Query: 319 LIKIPVEVRTAPT----MEQVEKFASLVSNSSKKPLYLHSKEGVWRT 361
I + R+ PT E++ + L++++ P+ +H G RT
Sbjct: 104 AIIMFESYRSFPTREDAAERLVELLQLLADAENGPVLIHCTAGKDRT 150
>gnl|CDD|215502 PLN02929, PLN02929, NADH kinase.
Length = 301
Score = 33.1 bits (76), Expect = 0.61
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 756 VDFVACLGGDGVILHASNLFRGAVP 780
VD V +GGDG +L AS+ ++P
Sbjct: 65 VDLVVAVGGDGTLLQASHFLDDSIP 89
>gnl|CDD|219403 pfam07409, GP46, Phage protein GP46. This family contains GP46
phage proteins (approximately 120 residues long).
Length = 115
Score = 31.1 bits (71), Expect = 0.82
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAI 308
E L+WL++ G T +D+ AER N +
Sbjct: 66 REALQWLIDDGVATAIDVTAERPGINRLALTV 97
>gnl|CDD|192589 pfam10444, Nbl1_Borealin_N, Nbl1 / Borealin N terminal. Nbl1 is a
subunit of the conserved CPC, the chromosomal passenger
complex, which regulates mitotic chromosome segregation.
In Fungi and Animalia, this complex consists of the
kinase Aurora B/AIR-2/Ipl1p, INCENP/ICP-1/Sli15p, and
Survivin/BIR-1/Bir1p. In Animalia, a fourth subunit
(Borealin/Dasra/CSC-1) is required for targeting CPC to
centromeres and central spindles. Nbl1 has been shown in
budding yeast to be essential for viability, and for CPC
localisation, stability, integrity, and function. The N
terminus of Borealin is homologous to Nbl1. This family
contains both Nbl1, and the N terminal region of
Borealin.
Length = 59
Score = 29.5 bits (67), Expect = 0.96
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 292 VDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKF 338
V+ RAER++ + YE + ++E+++IP VR + +EK+
Sbjct: 14 VEERAERLRSH-YENLLKSLRARLEIEILRIPRAVRKMKLRDLLEKY 59
>gnl|CDD|217330 pfam03035, RNA_capsid, Calicivirus putative RNA polymerase/capsid
protein.
Length = 226
Score = 31.6 bits (72), Expect = 1.5
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 504 TTSPPRYFNYQSKRMDVLPSEIVSSGPVSG-----VAETRYSQWSLSGN-NLSPNHQN-- 555
++ P + S V S+G S A +R S W S N NL P
Sbjct: 122 SSPVPVPPSSSSSASSVSSQSTQSTGLSSSSYSSSSASSRTSSWVRSQNSNLEPFMPGAL 181
Query: 556 -----LPAGSEKSSDNNGYVS 571
P S SS +G VS
Sbjct: 182 QTAWVTPPSSTASS--SGTVS 200
>gnl|CDD|225727 COG3186, COG3186, Phenylalanine-4-hydroxylase [Amino acid transport
and metabolism].
Length = 291
Score = 31.3 bits (71), Expect = 1.8
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 710 VASFLYHQEKMNILVEPDV-HDIFARIP 736
VA+F+ ++++ L EPD+ HD+F +P
Sbjct: 124 VATFMRTPDELDYLQEPDIFHDVFGHVP 151
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 31.8 bits (72), Expect = 1.9
Identities = 36/164 (21%), Positives = 52/164 (31%), Gaps = 12/164 (7%)
Query: 553 HQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRS-SMTEANLLTSVTKNLDEQVISSSVRD 611
S ++ + S ST + D S S + A TSV + ISSS R
Sbjct: 116 QALESTESTSTTSADCNDSEQSSTPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRS 175
Query: 612 VQRSNGKPSNSGDDDLGPIVGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESS 671
+ N PS P ++ +KK MF + + E E
Sbjct: 176 TAQLNKAPS--------PTKSAEPTAAPQAKPELPKKKQAMFTLGGSS-GDDDEDSFEDR 226
Query: 672 LAFTHPSTQQQMLMWKT--TPRTVLVLKKPGPALMEEAKEVASF 713
++ P L K P+LM K+ ASF
Sbjct: 227 MSSQDPKRSSLPKPKPKMFQLGGSDELGKSLPSLMSPRKKTASF 270
>gnl|CDD|238776 cd01518, RHOD_YceA, Member of the Rhodanese Homology Domain
superfamily. This CD includes Escherichia coli YceA,
Bacillus subtilis YbfQ, and similar uncharacterized
proteins.
Length = 101
Score = 29.5 bits (67), Expect = 1.9
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 250 PVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYK 289
P +L + D + K + +C GG E+ +L E+G+K
Sbjct: 49 PFWLDENLDLLKGKKV-LMYCTGGIRCEKASAYLKERGFK 87
>gnl|CDD|130334 TIGR01267, Phe4hydrox_mono, phenylalanine-4-hydroxylase, monomeric
form. This model describes the smaller, monomeric form
of phenylalanine-4-hydroxylase, as found in a small
number of Gram-negative bacteria. The enzyme
irreversibly converts phenylalanine to tryosine and is
known to be the rate-limiting step in phenylalanine
catabolism in some systems. This family is of biopterin
and metal-dependent hydroxylases is related to a family
of longer, multimeric aromatic amino acid hydroxylases
that have additional N-terminal regulatory sequences.
These include tyrosine 3-monooxygenase,
phenylalanine-4-hydroxylase, and tryptophan
5-monoxygenase [Energy metabolism, Amino acids and
amines].
Length = 248
Score = 31.0 bits (70), Expect = 2.0
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 710 VASFLYHQEKMNILVEPDV-HDIFARIP 736
V ++L E+++ L EPD+ HDIF +P
Sbjct: 93 VTTWLRTPEELDYLQEPDIFHDIFGHVP 120
>gnl|CDD|241196 cd12752, RRM1_RBM5, RNA recognition motif 1 in vertebrate
RNA-binding protein 5 (RBM5). This subgroup corresponds
to the RRM1 of RBM5, also termed protein G15, or
putative tumor suppressor LUCA15, or renal carcinoma
antigen NY-REN-9, a known modulator of apoptosis. It may
also act as a tumor suppressor or an RNA splicing
factor. RBM5 shows high sequence similarity to
RNA-binding protein 6 (RBM6 or NY-LU-12 or g16 or
DEF-3). Both, RBM5 and RBM6, specifically bind poly(G)
RNA. They contain two RNA recognition motifs (RRMs),
also termed RBDs (RNA binding domains) or RNPs
(ribonucleoprotein domains), two C2H2-type zinc fingers,
a nuclear localization signal, and a G-patch/D111
domain. .
Length = 87
Score = 29.2 bits (65), Expect = 2.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 737 GFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASN 773
GF FV+ ++LQD + E + G + +H SN
Sbjct: 49 GFAFVEFYHLQDATSWMEANQKKLVIQGKTIAMHYSN 85
>gnl|CDD|182971 PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional.
Length = 257
Score = 30.8 bits (70), Expect = 2.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 629 PIVGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLM 685
PI+G+ + G +R Q+R AE F C+R + S L+ THP T + + +
Sbjct: 174 PIIGD---TKHGDLR-QNRSLAE-------HFGCSRLMLHASELSLTHPFTGEPLTI 219
>gnl|CDD|239464 cd03348, pro_PheOH, Prokaryotic phenylalanine-4-hydroxylase
(pro_PheOH); a member of the biopterin-dependent
aromatic amino acid hydroxylase family of non-heme,
iron(II)-dependent enzymes that also includes the
eukaryotic proteins, phenylalanine-4-hydroxylase
(eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan
hydroxylase (TrpOH). PheOH catalyzes the hydroxylation
of L-Phe to L-tyrosine (L-Tyr). It uses
(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the
physiological electron donor.
Length = 228
Score = 30.3 bits (69), Expect = 3.9
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 709 EVASFLYHQEKMNILVEPDV-HDIFARIP 736
V +F+ E+++ L EPD+ HDIF +P
Sbjct: 92 PVTNFIRRPEELDYLQEPDIFHDIFGHVP 120
>gnl|CDD|221392 pfam12043, DUF3527, Domain of unknown function (DUF3527). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 120
amino acids in length. This domain has a conserved
CDCGGWD sequence motif.
Length = 277
Score = 30.5 bits (69), Expect = 4.1
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 607 SSVRDVQRSNGKPSNSGDDD--LGPIVGNMCASS 638
SV + ++ + NS D + G IVG M SS
Sbjct: 53 HSVGERKKKSASWLNSKDKNKCSGLIVGQMQVSS 86
>gnl|CDD|239440 cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded
by the rTS gene which, through alternative RNA splicing,
also encodes rTS alpha whose mRNA is complementary to
thymidylate synthase mRNA. rTS beta expression is
associated with the production of small molecules that
appear to mediate the down-regulation of thymidylate
synthase protein by a novel intercellular signaling
mechanism. A member of this family, from Xanthomonas,
has been characterized to be a L-fuconate dehydratase.
rTS beta belongs to the enolase superfamily of enzymes,
characterized by the presence of an enolate anion
intermediate which is generated by abstraction of the
alpha-proton of the carboxylate substrate by an active
site residue and is stabilized by coordination to the
essential Mg2+ ion.
Length = 415
Score = 30.4 bits (69), Expect = 4.3
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 23 LHNNETKLWGFGFRFKLQRRNESVRRRVK----LVVSAELSKSFSLNLGLDSQVIQSNDP 78
L + L G G F + R NE V ++ LVV +L + ++G + + S+
Sbjct: 38 LRTDAAGLKGHGLTFTIGRGNEIVCAAIEALAHLVVGRDLESIVA-DMGKFWRRLTSD-- 94
Query: 79 SQLPWIGPVPGDI 91
SQL WIGP G I
Sbjct: 95 SQLRWIGPEKGVI 107
>gnl|CDD|234751 PRK00411, cdc6, cell division control protein 6; Reviewed.
Length = 394
Score = 30.2 bits (69), Expect = 4.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 291 IVDIRAERVKDNFYEAAIDDAIL 313
I DI +RV++ FY +DD +L
Sbjct: 212 IFDILKDRVEEGFYPGVVDDEVL 234
>gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional.
Length = 254
Score = 30.0 bits (67), Expect = 5.0
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 722 ILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD----GVILHASNLFRG 777
IL + +V + A PG+G +SDLHERV + CL GD +I+ +L +
Sbjct: 151 ILSDVEVIQLLAVNPGYG-----SKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQD 205
Query: 778 AVPPVIS 784
+P +I+
Sbjct: 206 QLPSLIA 212
>gnl|CDD|237020 PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.
Length = 275
Score = 29.5 bits (67), Expect = 6.6
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 710 VASFLYHQEKMNILVEPDV-HDIFARIP 736
VA+F+ E+++ L EPD+ HD+F +P
Sbjct: 109 VATFIRRPEELDYLQEPDIFHDVFGHVP 136
>gnl|CDD|100598 PRK00561, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 259
Score = 29.1 bits (65), Expect = 8.6
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 757 DFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQ 807
D++ LGGDG + + + A V+ N G LGF TS D Q+
Sbjct: 35 DYLFVLGGDGFFVSTAANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFAN 85
>gnl|CDD|182461 PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.
Length = 256
Score = 28.9 bits (65), Expect = 10.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 218 WRKLQRLKNVCYDSGFP----RGDDYPIHTLFANW 248
WR + L VCYD FP +DY + ANW
Sbjct: 131 WRGWRILPLVCYDLRFPVWSRNRNDYDLALYVANW 165
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 44,509,176
Number of extensions: 4335594
Number of successful extensions: 3517
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3496
Number of HSP's successfully gapped: 48
Length of query: 890
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 784
Effective length of database: 6,236,078
Effective search space: 4889085152
Effective search space used: 4889085152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.2 bits)