RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002705
(890 letters)
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 302
Score = 78.5 bits (192), Expect = 2e-16
Identities = 40/190 (21%), Positives = 68/190 (35%), Gaps = 13/190 (6%)
Query: 691 RTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQ-- 747
R+VL++ G E A+ V L + ++ + D + ++ ++
Sbjct: 1 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIE 60
Query: 748 ---DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQD 804
+ + V LGGDG L A+ L R A PV+ NLG +GFL E
Sbjct: 61 VVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAV 120
Query: 805 LRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECY 864
L V+ + Y + R G LNEV +++G + +
Sbjct: 121 LEHVVAQD------YRVEDRLTLDVVVRQGG-RIVNRGWALNEVSLEKGPRLGVLGVVVE 173
Query: 865 EHDRLITKVR 874
R ++
Sbjct: 174 IDGRPVSAFG 183
>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase
PpnK {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 59.0 bits (142), Expect = 3e-10
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 741 VQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFED 800
V+ S+ E DF+ +GGDG IL + PP+ N G +G LT E+
Sbjct: 25 VEVELFNQPSEELENFDFIVSVGGDGTILRILQKLKR-CPPIFGINTGRVGLLTHASPEN 83
Query: 801 YRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSK 860
+ +L++ + + E F LNE+ V +
Sbjct: 84 FEVELKKAV--------------EKFEVERFPRVSCSAMPDVLALNEIAVLSRKPAKMID 129
Query: 861 IECYEHDRLITKVRPVNCF 879
+ + ++R + F
Sbjct: 130 VALRVDGVEVDRIR-CDGF 147
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 151
Score = 55.2 bits (132), Expect = 2e-09
Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 271 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAP 330
R G +L G ++I+ + E ++ + + I L + +E P
Sbjct: 17 RSGFPDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-----RLFQFGIEGNKEP 71
Query: 331 TM----EQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQI 379
+ ++ ++ + P+ +H K G RT +V R+ C + I
Sbjct: 72 FVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSI 124
>d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor
domain {Bacillus subtilis [TaxId: 1423]}
Length = 169
Score = 29.9 bits (67), Expect = 0.78
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 680 QQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFG 739
++Q+ M + + VL++ P + E + Y + E + DI
Sbjct: 26 KKQLKMVRLGDAELYVLEQLQPLIQENIVNIVDAFYKN----LDHESSLMDIINDHSSVD 81
Query: 740 FVQTFYLQ 747
++ +
Sbjct: 82 RLKQTLKR 89
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 28.9 bits (64), Expect = 2.5
Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 24/178 (13%)
Query: 143 SVLGCMLSLLNKGREDVLSGRS-SIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHI 201
V +L +L+ GR GR+ N + ++ + +R + +
Sbjct: 140 DVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFK 199
Query: 202 ALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIA 261
L+ + PE L RL + F I + LS + +A
Sbjct: 200 VLQQHFRPEF---------LNRLDEIVV---FRPLTKEQIR----QIVEIQLSYLRARLA 243
Query: 262 SKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRA-ERVKDNFYEAAIDDAILSGKVE 318
K + TE +L E+GY + R RV E + IL+G+V+
Sbjct: 244 EKRISLEL------TEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVK 295
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 27.0 bits (58), Expect = 8.2
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 795 SHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNG 834
++ +YR ++ + + LDG+ + + R + R G
Sbjct: 159 NNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVARGG 198
>d1hh1a_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 132
Score = 26.3 bits (58), Expect = 8.8
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 312 ILSGKVELIKIPVEVRTAPTM--------EQVEKFASLVSNSSKKPLYLHSKEGVWR 360
I++ K +I I +E+++ + EQ E S K GV +
Sbjct: 35 IIALKNGVI-ILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGGSLFLGVKKPGVLK 90
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 272
Score = 27.1 bits (59), Expect = 9.4
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPV--EVRTAPTM 332
+ + G L G + D+R+ R + D I V L+ P + +
Sbjct: 33 LDDAGRATLRRLGITDVADLRSSREVARRGPGRVPDGI---DVHLLPFPDLADDDADDSA 89
Query: 333 EQVEKFASLVSNSSKKPLYLHSKEGVWRTYA--MVSRWRQYMARCASQ 378
F L++N S + + M +RQ+ R +Q
Sbjct: 90 PHETAFKRLLTNDGSNGESGESSQSINDAATRYMTDEYRQFPTRNGAQ 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,196,777
Number of extensions: 148716
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 9
Length of query: 890
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 797
Effective length of database: 1,130,706
Effective search space: 901172682
Effective search space used: 901172682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)