Query 002707
Match_columns 890
No_of_seqs 222 out of 1233
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:30:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12902 secA preprotein trans 100.0 6E-226 1E-230 1961.2 75.3 798 1-882 84-932 (939)
2 CHL00122 secA preprotein trans 100.0 1E-215 2E-220 1879.1 74.9 769 1-878 75-868 (870)
3 PRK12901 secA preprotein trans 100.0 5E-216 1E-220 1889.9 69.1 675 1-880 168-1020(1112)
4 PRK12903 secA preprotein trans 100.0 3E-215 7E-220 1864.9 72.2 678 1-880 77-781 (925)
5 PRK13103 secA preprotein trans 100.0 2E-212 4E-217 1858.5 70.9 712 1-882 81-834 (913)
6 PRK13107 preprotein translocas 100.0 2E-206 3E-211 1807.3 70.7 709 1-879 81-831 (908)
7 PRK13104 secA preprotein trans 100.0 8E-205 2E-209 1797.4 70.5 710 1-879 81-827 (896)
8 PRK12904 preprotein translocas 100.0 4E-203 8E-208 1782.0 73.2 711 1-882 80-814 (830)
9 PRK12326 preprotein translocas 100.0 7E-203 1E-207 1743.7 64.1 620 1-880 77-721 (764)
10 PRK12900 secA preprotein trans 100.0 7E-201 2E-205 1763.4 68.4 670 1-877 137-941 (1025)
11 COG0653 SecA Preprotein transl 100.0 2E-201 5E-206 1750.4 56.3 682 1-881 79-784 (822)
12 PRK12906 secA preprotein trans 100.0 5E-197 1E-201 1723.8 71.3 677 1-879 79-792 (796)
13 PRK12899 secA preprotein trans 100.0 5E-189 1E-193 1659.8 69.6 680 1-881 93-932 (970)
14 TIGR00963 secA preprotein tran 100.0 6E-185 1E-189 1610.5 65.6 664 1-866 55-745 (745)
15 PRK09200 preprotein translocas 100.0 5E-179 1E-183 1579.1 69.8 682 1-889 77-787 (790)
16 TIGR03714 secA2 accessory Sec 100.0 7E-177 2E-181 1549.6 67.0 659 1-867 69-762 (762)
17 PRK12898 secA preprotein trans 100.0 2E-143 4E-148 1254.0 49.2 501 1-639 102-647 (656)
18 PF07517 SecA_DEAD: SecA DEAD- 100.0 8.8E-59 1.9E-63 495.3 8.1 168 1-283 76-266 (266)
19 PF07516 SecA_SW: SecA Wing an 100.0 1.6E-46 3.6E-51 390.1 26.9 214 602-879 1-214 (214)
20 PF01043 SecA_PP_bind: SecA pr 100.0 1.1E-32 2.4E-37 260.4 11.8 109 131-239 3-113 (113)
21 PRK10590 ATP-dependent RNA hel 99.4 2.2E-11 4.8E-16 140.3 22.4 85 309-397 226-312 (456)
22 PRK04837 ATP-dependent RNA hel 99.4 2.7E-11 5.8E-16 138.0 22.3 86 308-397 235-322 (423)
23 PRK11192 ATP-dependent RNA hel 99.4 4.9E-11 1.1E-15 136.1 22.4 226 25-396 78-311 (434)
24 PRK01297 ATP-dependent RNA hel 99.4 7E-11 1.5E-15 136.7 23.2 81 312-396 319-401 (475)
25 PRK11057 ATP-dependent DNA hel 99.3 2.3E-10 4.9E-15 136.6 27.8 121 268-397 177-303 (607)
26 PTZ00110 helicase; Provisional 99.3 9.2E-11 2E-15 138.3 22.7 85 311-397 358-444 (545)
27 PRK04537 ATP-dependent RNA hel 99.3 1.1E-10 2.4E-15 138.3 22.0 85 309-397 238-324 (572)
28 PRK11634 ATP-dependent RNA hel 99.3 2.8E-10 6.2E-15 136.2 24.9 84 311-397 228-312 (629)
29 PRK11776 ATP-dependent RNA hel 99.3 2.2E-10 4.7E-15 131.9 22.7 84 311-397 225-309 (460)
30 PLN00206 DEAD-box ATP-dependen 99.3 1.6E-10 3.5E-15 135.4 20.7 128 267-397 302-435 (518)
31 TIGR01389 recQ ATP-dependent D 99.2 6.7E-10 1.5E-14 132.0 21.4 80 313-396 209-290 (591)
32 PLN03137 ATP-dependent DNA hel 99.2 1.9E-09 4.2E-14 133.4 23.3 76 318-396 669-746 (1195)
33 cd00079 HELICc Helicase superf 99.1 5.9E-10 1.3E-14 104.2 11.4 87 308-396 6-94 (131)
34 KOG0333 U5 snRNP-like RNA heli 99.1 1.5E-09 3.2E-14 123.7 15.0 190 192-397 384-584 (673)
35 PRK10917 ATP-dependent DNA hel 99.1 6.8E-09 1.5E-13 125.6 21.0 74 25-113 315-394 (681)
36 PTZ00424 helicase 45; Provisio 99.1 1.2E-08 2.6E-13 114.8 21.4 67 329-397 266-334 (401)
37 TIGR00614 recQ_fam ATP-depende 99.0 1.7E-08 3.8E-13 117.0 19.4 124 267-397 164-293 (470)
38 TIGR00643 recG ATP-dependent D 98.9 5.4E-08 1.2E-12 116.9 21.1 74 25-113 289-368 (630)
39 TIGR03817 DECH_helic helicase/ 98.9 5.4E-08 1.2E-12 118.9 20.0 106 2-114 36-169 (742)
40 PRK13767 ATP-dependent helicas 98.9 6.3E-08 1.4E-12 120.3 20.5 81 313-396 267-356 (876)
41 PRK05298 excinuclease ABC subu 98.8 3E-07 6.6E-12 111.0 21.3 180 206-397 327-513 (652)
42 TIGR01587 cas3_core CRISPR-ass 98.7 2E-07 4.3E-12 103.6 14.2 131 266-397 156-295 (358)
43 PRK13766 Hef nuclease; Provisi 98.6 4.5E-07 9.7E-12 111.2 16.3 84 312-397 345-440 (773)
44 TIGR00631 uvrb excinuclease AB 98.6 4.6E-07 1E-11 109.3 16.0 177 206-397 324-509 (655)
45 PHA02558 uvsW UvsW helicase; P 98.4 2.5E-06 5.5E-11 100.0 12.9 84 313-397 327-412 (501)
46 TIGR00580 mfd transcription-re 98.4 3.5E-06 7.6E-11 105.1 14.5 124 267-397 601-729 (926)
47 PRK14701 reverse gyrase; Provi 98.3 3.1E-05 6.8E-10 101.3 22.5 101 3-115 80-213 (1638)
48 TIGR03158 cas3_cyano CRISPR-as 98.3 7.2E-06 1.6E-10 92.3 12.6 126 266-397 182-335 (357)
49 PHA02653 RNA helicase NPH-II; 98.2 1.3E-05 2.8E-10 97.1 15.3 126 267-397 323-463 (675)
50 PRK10689 transcription-repair 98.2 1.3E-05 2.8E-10 102.2 14.5 123 267-397 750-878 (1147)
51 PRK11664 ATP-dependent RNA hel 98.2 1E-05 2.2E-10 100.0 12.4 122 266-397 150-282 (812)
52 TIGR01970 DEAH_box_HrpB ATP-de 98.2 9E-06 2E-10 100.4 11.9 121 267-397 148-279 (819)
53 TIGR02621 cas3_GSU0051 CRISPR- 98.1 3.9E-05 8.5E-10 94.4 14.3 129 267-397 207-353 (844)
54 KOG0331 ATP-dependent RNA heli 98.0 4E-05 8.8E-10 89.6 12.5 84 312-397 322-408 (519)
55 PRK09401 reverse gyrase; Revie 98.0 0.0003 6.4E-09 90.3 21.1 102 2-115 80-214 (1176)
56 COG0513 SrmB Superfamily II DN 98.0 8.7E-05 1.9E-09 87.6 14.8 158 213-397 176-340 (513)
57 PRK01172 ski2-like helicase; P 98.0 4.4E-05 9.5E-10 92.7 12.0 127 266-397 170-328 (674)
58 PRK11131 ATP-dependent RNA hel 97.9 5.1E-05 1.1E-09 96.8 12.7 122 266-397 219-354 (1294)
59 PRK04914 ATP-dependent helicas 97.9 0.00034 7.3E-09 87.8 19.4 83 313-397 478-563 (956)
60 PRK02362 ski2-like helicase; P 97.9 0.00038 8.3E-09 85.6 18.6 74 320-396 233-345 (737)
61 PRK00254 ski2-like helicase; P 97.9 0.0001 2.2E-09 90.3 13.5 126 266-396 170-337 (720)
62 TIGR01967 DEAH_box_HrpA ATP-de 97.8 0.00012 2.5E-09 93.8 13.2 126 267-397 213-347 (1283)
63 PRK09694 helicase Cas3; Provis 97.8 0.00015 3.2E-09 90.3 13.8 81 317-397 547-638 (878)
64 TIGR01054 rgy reverse gyrase. 97.8 0.00097 2.1E-08 85.7 21.2 101 2-115 78-212 (1171)
65 PF00271 Helicase_C: Helicase 97.6 0.00015 3.2E-09 63.2 7.1 48 348-397 1-50 (78)
66 COG1111 MPH1 ERCC4-like helica 97.6 0.001 2.2E-08 77.2 14.2 83 312-396 349-441 (542)
67 smart00490 HELICc helicase sup 97.5 0.00026 5.6E-09 60.6 7.1 51 345-397 2-54 (82)
68 COG0514 RecQ Superfamily II DN 97.5 0.0026 5.7E-08 75.9 17.7 158 214-397 134-297 (590)
69 KOG0330 ATP-dependent RNA heli 97.5 0.00096 2.1E-08 75.2 12.0 128 267-397 237-367 (476)
70 KOG0344 ATP-dependent RNA heli 97.4 0.0014 3.1E-08 77.0 13.5 128 267-397 323-455 (593)
71 PRK09751 putative ATP-dependen 97.4 0.00091 2E-08 87.0 12.3 79 316-397 230-344 (1490)
72 KOG0336 ATP-dependent RNA heli 97.3 0.0021 4.6E-08 72.8 12.4 129 267-397 399-532 (629)
73 TIGR00603 rad25 DNA repair hel 97.2 0.0019 4.1E-08 79.0 11.8 148 243-397 377-559 (732)
74 KOG0347 RNA helicase [RNA proc 97.2 0.0014 3.1E-08 76.4 9.7 141 329-617 463-603 (731)
75 KOG0341 DEAD-box protein abstr 97.1 0.0026 5.7E-08 71.6 10.4 138 257-397 349-488 (610)
76 COG1061 SSL2 DNA or RNA helica 97.1 0.015 3.2E-07 67.8 16.8 83 310-396 264-348 (442)
77 KOG0339 ATP-dependent RNA heli 96.9 0.0036 7.8E-08 72.6 9.5 92 304-397 443-535 (731)
78 COG1203 CRISPR-associated heli 96.8 0.0041 8.9E-08 76.7 10.2 131 267-398 372-512 (733)
79 KOG0335 ATP-dependent RNA heli 96.7 0.015 3.2E-07 67.8 12.6 114 280-397 281-404 (482)
80 KOG0343 RNA Helicase [RNA proc 96.5 0.33 7.1E-06 57.6 21.6 232 25-397 146-382 (758)
81 KOG0332 ATP-dependent RNA heli 96.3 0.02 4.3E-07 64.7 9.9 121 267-397 266-397 (477)
82 KOG0342 ATP-dependent RNA heli 96.3 0.26 5.5E-06 57.7 18.7 161 207-396 226-396 (543)
83 KOG0328 Predicted ATP-dependen 96.1 0.057 1.2E-06 59.3 12.1 123 267-397 202-333 (400)
84 KOG0340 ATP-dependent RNA heli 96.0 0.07 1.5E-06 60.1 12.2 90 307-397 230-321 (442)
85 KOG0351 ATP-dependent DNA heli 95.9 0.073 1.6E-06 67.2 13.5 123 267-397 422-552 (941)
86 TIGR00595 priA primosomal prot 95.7 0.08 1.7E-06 62.9 12.3 55 343-397 271-329 (505)
87 KOG0327 Translation initiation 95.7 0.24 5.1E-06 56.5 14.9 79 315-397 252-330 (397)
88 KOG0334 RNA helicase [RNA proc 95.5 0.083 1.8E-06 66.1 11.5 108 288-397 570-680 (997)
89 PLN03142 Probable chromatin-re 95.1 0.14 3.1E-06 65.3 12.3 84 312-396 469-556 (1033)
90 KOG0326 ATP-dependent RNA heli 94.8 0.058 1.3E-06 60.0 6.6 85 308-397 302-389 (459)
91 COG1200 RecG RecG-like helicas 94.6 0.23 5E-06 60.2 11.4 143 232-396 396-549 (677)
92 COG1201 Lhr Lhr-like helicases 94.6 0.43 9.4E-06 59.6 14.0 153 234-396 158-320 (814)
93 KOG0353 ATP-dependent DNA heli 94.5 0.23 5E-06 56.3 10.3 126 262-396 245-383 (695)
94 PRK11448 hsdR type I restricti 94.3 1.1 2.4E-05 58.3 17.2 77 318-397 684-773 (1123)
95 COG1202 Superfamily II helicas 94.2 0.62 1.3E-05 55.7 13.3 124 267-397 374-507 (830)
96 KOG0338 ATP-dependent RNA heli 93.6 2.2 4.7E-05 50.6 16.1 165 205-397 321-493 (691)
97 COG1205 Distinct helicase fami 93.4 0.38 8.2E-06 60.7 10.6 130 267-396 234-380 (851)
98 COG4098 comFA Superfamily II D 93.1 0.8 1.7E-05 51.9 11.4 121 270-396 238-371 (441)
99 KOG0346 RNA helicase [RNA proc 93.1 9.2 0.0002 44.9 20.0 118 269-390 205-328 (569)
100 cd00046 DEXDc DEAD-like helica 92.8 0.11 2.4E-06 47.7 3.6 82 25-117 35-118 (144)
101 KOG0350 DEAD-box ATP-dependent 92.7 1.1 2.5E-05 52.7 12.2 54 538-600 504-557 (620)
102 PRK05580 primosome assembly pr 92.6 1.4 3.1E-05 54.3 13.9 55 342-396 438-496 (679)
103 KOG4284 DEAD box protein [Tran 92.3 0.24 5.2E-06 59.5 6.4 61 333-396 275-338 (980)
104 KOG0345 ATP-dependent RNA heli 91.9 1.7 3.7E-05 51.0 12.3 86 310-397 237-324 (567)
105 cd00268 DEADc DEAD-box helicas 91.5 0.16 3.6E-06 51.7 3.5 81 25-115 74-156 (203)
106 KOG0352 ATP-dependent DNA heli 91.3 0.45 9.8E-06 55.0 6.9 62 333-396 258-321 (641)
107 TIGR01407 dinG_rel DnaQ family 90.6 1.5 3.2E-05 55.5 11.3 137 258-397 588-742 (850)
108 KOG0337 ATP-dependent RNA heli 90.2 1.4 3.1E-05 51.0 9.6 154 218-401 171-332 (529)
109 KOG0952 DNA/RNA helicase MER3/ 87.5 1.8 3.9E-05 54.9 8.6 90 267-356 277-375 (1230)
110 COG0556 UvrB Helicase subunit 86.2 4.3 9.3E-05 48.6 10.3 176 211-396 331-512 (663)
111 TIGR00614 recQ_fam ATP-depende 85.0 1.1 2.5E-05 52.5 5.1 100 3-115 12-140 (470)
112 KOG0923 mRNA splicing factor A 84.5 10 0.00023 46.4 12.5 121 267-400 412-550 (902)
113 KOG0338 ATP-dependent RNA heli 84.2 0.81 1.8E-05 54.0 3.3 84 25-117 257-342 (691)
114 COG0513 SrmB Superfamily II DN 83.5 1.1 2.4E-05 53.5 4.1 81 25-115 104-187 (513)
115 KOG0329 ATP-dependent RNA heli 81.9 0.74 1.6E-05 50.2 1.7 39 540-578 321-359 (387)
116 PF00270 DEAD: DEAD/DEAH box h 80.6 0.9 1.9E-05 44.5 1.7 83 25-117 49-134 (169)
117 PRK01172 ski2-like helicase; P 78.0 3 6.5E-05 51.3 5.4 107 3-122 23-154 (674)
118 TIGR00580 mfd transcription-re 77.7 2.8 6.1E-05 53.6 5.1 75 25-114 505-585 (926)
119 PRK07246 bifunctional ATP-depe 74.2 15 0.00033 46.6 10.2 134 259-397 567-711 (820)
120 KOG0349 Putative DEAD-box RNA 72.5 9.5 0.00021 44.6 7.1 71 326-397 502-575 (725)
121 KOG0924 mRNA splicing factor A 70.0 25 0.00053 43.6 9.9 117 267-391 502-634 (1042)
122 PF04364 DNA_pol3_chi: DNA pol 69.8 14 0.0003 36.7 6.8 70 316-398 15-91 (137)
123 COG2927 HolC DNA polymerase II 69.8 9.4 0.0002 38.6 5.6 80 308-400 6-93 (144)
124 PRK11747 dinG ATP-dependent DN 69.7 29 0.00064 43.2 11.1 134 259-397 450-602 (697)
125 KOG0331 ATP-dependent RNA heli 69.0 5.9 0.00013 47.5 4.7 90 16-115 157-252 (519)
126 PRK08074 bifunctional ATP-depe 66.9 46 0.00099 43.0 12.3 137 259-397 666-821 (928)
127 KOG0342 ATP-dependent RNA heli 66.8 6.8 0.00015 46.4 4.5 82 25-115 159-243 (543)
128 PRK02362 ski2-like helicase; P 65.0 7 0.00015 48.7 4.5 83 25-120 72-154 (737)
129 COG1200 RecG RecG-like helicas 64.3 7.2 0.00016 47.9 4.2 83 25-122 316-412 (677)
130 COG0553 HepA Superfamily II DN 63.2 58 0.0013 40.6 12.0 61 314-375 692-755 (866)
131 KOG0345 ATP-dependent RNA heli 62.7 12 0.00026 44.3 5.4 83 25-115 84-170 (567)
132 KOG0991 Replication factor C, 62.4 3.6 7.8E-05 44.9 1.1 38 78-115 89-126 (333)
133 smart00487 DEXDc DEAD-like hel 62.1 8.5 0.00019 37.5 3.7 78 25-115 59-142 (201)
134 KOG0348 ATP-dependent RNA heli 61.4 58 0.0013 39.5 10.6 30 552-581 532-562 (708)
135 KOG0920 ATP-dependent RNA heli 59.8 26 0.00057 44.9 8.1 79 316-398 397-486 (924)
136 PRK00254 ski2-like helicase; P 59.8 14 0.00031 45.9 5.9 79 25-115 73-151 (720)
137 PRK14719 bifunctional RNAse/5- 59.3 31 0.00068 39.7 8.0 74 313-393 7-82 (360)
138 PRK05728 DNA polymerase III su 59.1 36 0.00078 34.0 7.5 52 311-362 10-65 (142)
139 TIGR00174 miaA tRNA isopenteny 58.0 19 0.00041 40.2 5.9 71 268-339 4-98 (287)
140 PRK10689 transcription-repair 57.7 9 0.00019 50.3 3.7 75 25-114 654-734 (1147)
141 PRK09751 putative ATP-dependen 56.8 8 0.00017 51.8 3.1 82 25-115 42-137 (1490)
142 KOG0951 RNA helicase BRR2, DEA 55.8 30 0.00066 45.5 7.6 113 248-361 452-577 (1674)
143 KOG0925 mRNA splicing factor A 54.2 56 0.0012 39.2 8.9 149 213-391 161-324 (699)
144 PF01113 DapB_N: Dihydrodipico 52.5 40 0.00086 32.6 6.4 108 268-389 5-124 (124)
145 PLN02229 alpha-galactosidase 52.1 69 0.0015 37.9 9.3 124 187-338 81-216 (427)
146 KOG4150 Predicted ATP-dependen 49.5 1.2E+02 0.0027 37.1 10.7 76 273-348 459-543 (1034)
147 COG1199 DinG Rad3-related DNA 48.9 47 0.001 40.7 7.8 81 314-397 462-545 (654)
148 COG1643 HrpA HrpA-like helicas 48.9 56 0.0012 41.8 8.5 119 266-391 196-324 (845)
149 PF14417 MEDS: MEDS: MEthanoge 48.2 36 0.00078 35.2 5.7 54 303-356 20-73 (191)
150 COG1201 Lhr Lhr-like helicases 47.9 17 0.00037 46.0 3.8 72 37-119 93-166 (814)
151 KOG0347 RNA helicase [RNA proc 47.7 13 0.00029 44.7 2.7 86 25-117 268-355 (731)
152 PF13361 UvrD_C: UvrD-like hel 44.4 92 0.002 33.7 8.4 55 308-362 52-109 (351)
153 PRK04596 minC septum formation 44.1 14 0.0003 40.6 2.0 44 528-582 171-216 (248)
154 PRK00339 minC septum formation 42.8 15 0.00031 40.3 1.9 44 528-582 172-217 (249)
155 PHA02558 uvsW UvsW helicase; P 41.9 29 0.00063 41.4 4.4 43 534-576 411-454 (501)
156 PLN02748 tRNA dimethylallyltra 39.8 66 0.0014 38.5 6.8 80 267-351 26-129 (468)
157 COG0324 MiaA tRNA delta(2)-iso 38.9 83 0.0018 35.7 7.1 70 268-338 8-101 (308)
158 PRK04516 minC septum formation 38.0 19 0.00041 39.2 1.9 44 528-582 156-201 (235)
159 PLN02840 tRNA dimethylallyltra 37.5 86 0.0019 37.0 7.2 80 267-351 25-128 (421)
160 COG1204 Superfamily II helicas 37.1 37 0.0008 43.0 4.4 48 30-79 86-133 (766)
161 PTZ00007 (NAP-L) nucleosome as 36.7 1.2E+02 0.0026 34.9 7.9 46 609-654 43-88 (337)
162 TIGR00603 rad25 DNA repair hel 36.3 33 0.00071 43.1 3.8 107 1-114 256-387 (732)
163 PRK05580 primosome assembly pr 35.5 1.3E+02 0.0028 37.6 8.7 76 313-390 173-251 (679)
164 PRK01973 septum formation inhi 35.1 22 0.00048 39.4 1.9 43 529-582 192-236 (271)
165 PF06823 DUF1236: Protein of u 34.6 34 0.00074 30.1 2.6 22 204-225 40-61 (65)
166 TIGR00595 priA primosomal prot 34.5 1.4E+02 0.003 36.0 8.5 64 323-388 18-84 (505)
167 PRK03511 minC septum formation 34.5 23 0.00049 38.3 1.8 45 528-583 151-197 (228)
168 PF06071 YchF-GTPase_C: Protei 34.0 23 0.00051 32.7 1.5 67 151-217 4-81 (84)
169 KOG0333 U5 snRNP-like RNA heli 33.6 31 0.00068 41.6 2.8 87 25-122 327-415 (673)
170 KOG0989 Replication factor C, 33.4 23 0.00049 40.2 1.6 47 66-116 97-143 (346)
171 cd04867 TGS_YchF_C TGS_YchF_C: 33.2 52 0.0011 30.5 3.6 67 151-217 4-81 (83)
172 PF01408 GFO_IDH_MocA: Oxidore 32.9 56 0.0012 30.3 4.0 88 267-359 27-118 (120)
173 TIGR01313 therm_gnt_kin carboh 32.2 2.4E+02 0.0053 27.7 8.6 92 268-361 3-99 (163)
174 COG1204 Superfamily II helicas 31.9 87 0.0019 39.8 6.5 135 189-352 131-275 (766)
175 PF13344 Hydrolase_6: Haloacid 31.6 77 0.0017 29.6 4.6 40 318-357 18-58 (101)
176 PLN03231 putative alpha-galact 30.9 1.4E+02 0.0031 34.5 7.4 59 195-254 26-114 (357)
177 PRK00030 minC septum formation 30.6 29 0.00062 39.0 1.8 44 528-582 213-258 (292)
178 PRK06646 DNA polymerase III su 29.5 1.1E+02 0.0024 31.3 5.6 53 310-362 9-65 (154)
179 KOG0330 ATP-dependent RNA heli 29.1 28 0.00061 40.5 1.5 83 25-116 134-218 (476)
180 PRK11131 ATP-dependent RNA hel 29.0 46 0.001 44.3 3.5 70 30-117 132-201 (1294)
181 cd01523 RHOD_Lact_B Member of 29.0 93 0.002 28.1 4.6 36 325-360 56-91 (100)
182 PLN02692 alpha-galactosidase 28.9 2E+02 0.0043 34.1 8.2 122 190-338 77-210 (412)
183 PRK04804 minC septum formation 28.9 33 0.00071 36.8 1.9 43 529-582 144-188 (221)
184 PLN02808 alpha-galactosidase 28.7 1.9E+02 0.0042 33.8 8.1 121 190-338 53-186 (386)
185 PF10861 DUF2784: Protein of U 27.0 32 0.0007 33.4 1.3 19 549-567 57-75 (112)
186 TIGR01222 minC septum site-det 26.6 39 0.00084 36.1 1.9 43 529-582 142-186 (217)
187 PRK00091 miaA tRNA delta(2)-is 25.8 1.7E+02 0.0036 33.1 6.8 71 267-338 8-102 (307)
188 PF13671 AAA_33: AAA domain; P 25.6 84 0.0018 29.9 3.9 95 268-362 4-104 (143)
189 COG1202 Superfamily II helicas 25.2 67 0.0014 39.4 3.6 84 27-122 268-357 (830)
190 PRK12898 secA preprotein trans 25.1 1.9E+02 0.0042 36.1 7.6 56 327-388 141-200 (656)
191 TIGR03117 cas_csf4 CRISPR-asso 25.0 2.3E+02 0.0051 35.3 8.3 143 251-396 376-538 (636)
192 PRK06893 DNA replication initi 24.7 1.3E+02 0.0028 32.0 5.5 74 267-341 43-135 (229)
193 PF05889 SLA_LP_auto_ag: Solub 24.6 90 0.0019 36.5 4.4 87 287-383 122-214 (389)
194 PRK05177 minC septum formation 24.2 43 0.00093 36.4 1.7 44 528-582 162-207 (239)
195 KOG0922 DEAH-box RNA helicase 23.7 3.4E+02 0.0073 34.0 9.1 122 266-400 196-334 (674)
196 COG0329 DapA Dihydrodipicolina 23.0 3.1E+02 0.0067 30.8 8.2 119 268-392 77-216 (299)
197 TIGR01075 uvrD DNA helicase II 23.0 2.1E+02 0.0045 35.8 7.6 59 312-370 321-382 (715)
198 PRK14729 miaA tRNA delta(2)-is 22.4 2E+02 0.0044 32.5 6.6 71 268-339 9-102 (300)
199 TIGR03127 RuMP_HxlB 6-phospho 22.3 1.4E+02 0.0029 30.3 4.8 64 277-341 43-110 (179)
200 PF00956 NAP: Nucleosome assem 22.0 2.4E+02 0.0053 30.5 6.9 46 610-655 5-50 (244)
201 PRK13947 shikimate kinase; Pro 21.8 1.1E+02 0.0024 30.3 4.0 93 268-362 6-102 (171)
202 TIGR01279 DPOR_bchN light-inde 21.2 4.7E+02 0.01 30.5 9.5 92 260-361 78-186 (407)
203 TIGR03714 secA2 accessory Sec 21.1 3.1E+02 0.0068 34.9 8.4 60 328-388 109-172 (762)
204 PF13401 AAA_22: AAA domain; P 21.0 25 0.00053 33.0 -0.8 26 104-129 89-125 (131)
205 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.9 1.5E+02 0.0032 27.8 4.5 57 284-341 22-84 (126)
206 KOG1805 DNA replication helica 20.8 46 0.001 42.7 1.3 26 101-126 795-820 (1100)
207 PF01548 DEDD_Tnp_IS110: Trans 20.7 58 0.0013 31.6 1.7 69 308-380 27-108 (144)
208 TIGR01970 DEAH_box_HrpB ATP-de 20.5 75 0.0016 40.6 3.0 78 25-117 49-128 (819)
209 PF09413 DUF2007: Domain of un 20.3 1.1E+02 0.0024 26.1 3.2 29 334-362 3-31 (67)
210 cd05014 SIS_Kpsf KpsF-like pro 20.2 1.8E+02 0.0039 27.4 4.9 55 286-340 25-84 (128)
211 TIGR01073 pcrA ATP-dependent D 20.1 2.7E+02 0.0058 35.0 7.6 60 311-370 321-384 (726)
No 1
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.3e-226 Score=1961.17 Aligned_cols=798 Identities=48% Similarity=0.769 Sum_probs=702.0
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
||||||||+||+|||+|+||||+| |||||||||+||++||+|||+|||||||+|.++
T Consensus 84 ~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~ 163 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQD 163 (939)
T ss_pred CCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCC
Confidence 899999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcchH
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~ 137 (890)
+++++||++|.||||||||++||||||||||+.+++++|+| +|+|||||||||||||||||||||||+...+...|.
T Consensus 164 ~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR---~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~ 240 (939)
T PRK12902 164 MSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQR---PFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ 240 (939)
T ss_pred CChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccC---ccceEEEecccceeeccCCCcccccCCCccchHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999998889999
Q ss_pred HHHHHHHHhcc------CCCeEEeCCCCeeeccHhhHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcccCcceEEeC
Q 002707 138 VAAKVAELLVQ------GLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 211 (890)
Q Consensus 138 ~~~~~v~~l~~------~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d 211 (890)
.++.+++.|++ +.||.+|++.++|+||++|+.++|++++++|||++.++|.|||.+||+|+++|++|+||||+|
T Consensus 241 ~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~d 320 (939)
T PRK12902 241 KAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRN 320 (939)
T ss_pred HHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 99999999987 779999999999999999999999999999999988899999999999999999999999999
Q ss_pred CeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhhCCCeE
Q 002707 212 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 291 (890)
Q Consensus 212 g~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv 291 (890)
|+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|+||+||||||+|++.||+++|||+|+
T Consensus 321 g~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv 400 (939)
T PRK12902 321 GEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVT 400 (939)
T ss_pred CEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHH
Q 002707 292 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 371 (890)
Q Consensus 292 ~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA 371 (890)
+||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||++|++.||||+||||++.|+++||
T Consensus 401 ~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA 480 (939)
T PRK12902 401 VIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREA 480 (939)
T ss_pred EcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999766889999
Q ss_pred HHHHhcCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHH
Q 002707 372 ETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA 451 (890)
Q Consensus 372 ~IIa~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (890)
+|||+||++|+||||||||||||||+|||||+++++..++..+.+......+..+.... ..+-..++.++++
T Consensus 481 ~IIa~AG~~GaVTIATNMAGRGTDIkLgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-- 552 (939)
T PRK12902 481 EIVAQAGRKGAVTIATNMAGRGTDIILGGNSDYMARLKLREYLMPRLVKPEDDHKPPVP------LQRGLKGGQGFGP-- 552 (939)
T ss_pred HHHHhcCCCCcEEEeccCCCCCcCEeeCCchhhhhhHHhhhhccccccccccccccccc------ccccccccccccc--
Confidence 99999999999999999999999999999999999988754433322222111100000 0001113334433
Q ss_pred HHHHHHhhhccccCCchhhhhhhhh---hhhhhhhhhhhhHHHHHHHH------------------hhhccCCCCChhhH
Q 002707 452 KAALLAKYVGKAEGKSWTYQEAKSF---FSESVEMSQSMNLKELQKLI------------------DKQSAMYPLGPTVA 510 (890)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 510 (890)
..+++.+.|+.+.+--+ +++.+..+....--.+++.. +......+....++
T Consensus 553 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (939)
T PRK12902 553 --------KAKKPKKTWKASSASIFPCELSEETEQLLKEAVDFAVKQYGDRSLPELELEDKIATAAEKAPTDDPVIQKLR 624 (939)
T ss_pred --------ccccccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccccchhhhhhhhhcccccchhhhhHH
Confidence 25677889988765311 11111111110000111000 00111234455789
Q ss_pred HHHHhhhhhhcccccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHH
Q 002707 511 LTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVD 590 (890)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~ 590 (890)
.+|..++.+++..|.+++++|+++|||||||||||||||||||||||||||||||+|||||||||||||+|| ++++.+
T Consensus 625 ~~~~~~~~~~~~~~~~e~~~V~elGGL~VIGTERHESRRIDNQLRGRaGRQGDPGsSrFflSLEDdL~r~Fg--~dri~~ 702 (939)
T PRK12902 625 EAYNRIKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFG--GDRVAG 702 (939)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHcCCCeEEecCccccchHHHHhhcccccCCCCCcceEEEEechHHHHHhC--cHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHhcCCCCCCCccchhHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002707 591 LISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAV 670 (890)
Q Consensus 591 ~~~~~~~~~~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~ 670 (890)
+|+++++++++||++++++++|++||++||++||++||++++||+|||.||++||++|++||++ +++.+.|.+|++++
T Consensus 703 ~~~~l~~~e~~~I~~~~i~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~ 780 (939)
T PRK12902 703 LMNAFRVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--RDLKEQVIGYGEKT 780 (939)
T ss_pred HHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999965 47999999999999
Q ss_pred HHHHHHhcCCCCCCCCccCHHHHHHHHHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCcccccc
Q 002707 671 VDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGI 750 (890)
Q Consensus 671 i~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (890)
|+++|+.+..+...+++|++++|...+...+ .... .+++
T Consensus 781 i~~~v~~~~~~~~~~~~w~~~~l~~~l~~~~--~~~~---~~~~------------------------------------ 819 (939)
T PRK12902 781 MDEIVEAYVNPDLPPEEWDLDQLVSKVKEFV--YLLE---DLKP------------------------------------ 819 (939)
T ss_pred HHHHHHHhcCCccChhhccHHHHHHHHHHHh--cChh---hcCh------------------------------------
Confidence 9999999887665678899999887665321 0000 0000
Q ss_pred ccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002707 751 RRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQES-RYDDVYMKEVERAVLVKTLDCFWRDHLIN 829 (890)
Q Consensus 751 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~y~~k~~~~-~~~~~~~~~~ER~ilL~aID~~W~eHLd~ 829 (890)
++ ....+.+++++++.+.+...|..|+... ..+++.++++||.++|++||.+|++||++
T Consensus 820 ---------------~~-----~~~~~~~~l~~~l~~~~~~~y~~K~~~l~~~~~~~~~~~eR~i~L~~iD~~W~eHL~~ 879 (939)
T PRK12902 820 ---------------ED-----LEDLSVEELKAFLHEQLRIAYDLKEAQIDQIRPGLMREAERFFILQQIDTLWREHLQS 879 (939)
T ss_pred ---------------Hh-----hccCCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0112446789999999999997764432 12678999999999999999999999999
Q ss_pred HHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccCcc
Q 002707 830 MNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSSPM 882 (890)
Q Consensus 830 Md~LRegI~LRsYgQKDPL~EYkkEAf~lF~~M~~~I~~~iv~~L~~~~~~~~ 882 (890)
|++||+|||||+||||||+.|||+|||++|..|+.+|+.+++++||+++.++.
T Consensus 880 md~Lre~I~lR~ygQkdPl~EYk~Ea~~~F~~m~~~ir~~vv~~l~~~~~~~~ 932 (939)
T PRK12902 880 MDALRESVGLRGYGQKDPLIEYKNEGYEMFLEMMTNIRRNVVYSLFMFQPQPQ 932 (939)
T ss_pred HHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeccCC
Confidence 99999999999999999999999999999999999999999999999985544
No 2
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=100.00 E-value=1.1e-215 Score=1879.15 Aligned_cols=769 Identities=45% Similarity=0.715 Sum_probs=678.3
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
||||||||+||++||+|+||||+| |||||||||+||++||+|||+|||||||++.++
T Consensus 75 ~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~ 154 (870)
T CHL00122 75 LRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEG 154 (870)
T ss_pred CCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCC
Confidence 799999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcchH
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~ 137 (890)
+++++||++|.||||||||+|||||||||||+.+++++|+| +++|||||||||||||||||||||||+++.+...|.
T Consensus 155 ~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r---~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~~y~ 231 (870)
T CHL00122 155 MSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQR---PFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYI 231 (870)
T ss_pred CChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhcc---ccceeeeecchhheeccCCCceeccCCCccchHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999998889999
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcccCcceEEeCCeEEEE
Q 002707 138 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 217 (890)
Q Consensus 138 ~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~dg~I~iV 217 (890)
.++.+++.|+++.||.+|++.++|+||++|+.++|++++++|||+..++|.|+|.+||+|+++|++|+||||+||+|+||
T Consensus 232 ~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV~iV 311 (870)
T CHL00122 232 VADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIV 311 (870)
T ss_pred HHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred eCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhhCCCeEEcCCCC
Q 002707 218 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNL 297 (890)
Q Consensus 218 D~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~k 297 (890)
|++|||+|+||+||+||||||||||||+|++|++|+|+||||||||+|++|+||||||++++.||+++|||+|++||||+
T Consensus 312 De~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnk 391 (870)
T CHL00122 312 DEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHR 391 (870)
T ss_pred ECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHhc
Q 002707 298 PNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQA 377 (890)
Q Consensus 298 p~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~A 377 (890)
|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||.+|++.||||+||||++.++++||+|||+|
T Consensus 392 p~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A 471 (870)
T CHL00122 392 PMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA 471 (870)
T ss_pred CccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999654579999999999
Q ss_pred CCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHH
Q 002707 378 GRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 457 (890)
Q Consensus 378 G~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (890)
|++|+||||||||||||||+|||||+++++..++..+.+....+..... ...+.
T Consensus 472 G~~G~VTIATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------------------- 525 (870)
T CHL00122 472 GRKGSITIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKISTI---SQNFL----------------------- 525 (870)
T ss_pred CCCCcEEEeccccCCCcCeecCCchhHHHHHHHhhhhcccccccccccc---cccch-----------------------
Confidence 9999999999999999999999999999998886544432221100000 00000
Q ss_pred hhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhh-hccCCCCChhhHHHHHhhhhhhcccccccchhhhhcCc
Q 002707 458 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDK-QSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 536 (890)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 536 (890)
..-.|...+.+.. . .+. +..+.....++. .....+....++.+|...+.+++++|.+++++|+++||
T Consensus 526 ------~~~~~~~~~~~~~-~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~V~~~GG 593 (870)
T CHL00122 526 ------NILNSLKNDLKFL-S----LSD-FENLKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGG 593 (870)
T ss_pred ------hhhhhcccchhhh-c----ccc-cccccccccccccccccchhhhhhhhHHHHHHHHHHHHhhhhHHHHHHcCC
Confidence 0111111111100 0 000 000000000000 00122334458899999999999999999999999999
Q ss_pred eEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHHHHHhcCCCCCCCccchhHHHHHHHHH
Q 002707 537 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 616 (890)
Q Consensus 537 L~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 616 (890)
|||||||||||||||||||||||||||||+|+|||||||+||++|| ++++.++|+++++ +++||++++++++|++||
T Consensus 594 L~VIgTErheSrRIDnQLrGRaGRQGDPG~s~f~lSLED~l~~~f~--~~~~~~~~~~~~~-~~~~i~~~~~~~~i~~aQ 670 (870)
T CHL00122 594 LYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDNLLRIFG--GDKIQNLMQTLNL-DDEPLESKLLSKSLDSAQ 670 (870)
T ss_pred CEEEecCcCchHHHHHHHhccccCCCCCCcceEEEEeccHHHHhhC--hHHHHHHHHHhCC-CCcccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 9999999999999 899999999999999999
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHH
Q 002707 617 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 696 (890)
Q Consensus 617 ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~~~~~~l~~~ 696 (890)
++||++||++||++++||+|++.||++||++|++||.+ +++.+.+.+|++++|+++++ +.++.. +.+|++++|...
T Consensus 671 ~~vE~~~~~~Rk~ll~yD~v~~~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~v~-~~~~~~-~~~~~~~~l~~~ 746 (870)
T CHL00122 671 KKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILES--QSLRDWILAYGEQVIDDIIT-FLKSRK-NPNNKFINLINK 746 (870)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHH-hcCccC-cccccHHHHHHH
Confidence 99999999999999999999999999999999999965 47999999999999999999 765544 344999999876
Q ss_pred HHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccc
Q 002707 697 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 776 (890)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 776 (890)
+...++... .++. . .....
T Consensus 747 ~~~~~~~~~-----~~~~------------------------------~--------------------------~~~~~ 765 (870)
T CHL00122 747 FKELLKLPL-----CFNK------------------------------S--------------------------DLNTL 765 (870)
T ss_pred HHHHhCCCC-----Ccch------------------------------h--------------------------hhcCC
Confidence 654321100 0000 0 00112
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHHHH
Q 002707 777 TTNLLRKYLGDILIASYLNVVQES-RYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDG 855 (890)
Q Consensus 777 ~~~~~~~~l~~~i~~~y~~k~~~~-~~~~~~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EYkkEA 855 (890)
+.+++++++.+.++..|..+.... ..+++.++++||.++|++||.+|++||++|++||+||+||+||||||+.|||+||
T Consensus 766 ~~~~~~~~l~~~~~~~y~~k~~~~~~~~~~~~~~~er~~~L~~iD~~W~eHL~~md~Lr~~I~lR~ygQkdPl~EYk~Ea 845 (870)
T CHL00122 766 NSGELKKFLYQQFWISYDLKELYLEQIGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEA 845 (870)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHH
Confidence 456788999999999997764322 2278899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcc
Q 002707 856 CRFFISMLSATRRLTVESLVQYW 878 (890)
Q Consensus 856 f~lF~~M~~~I~~~iv~~L~~~~ 878 (890)
|++|+.|+.+|+++++++||++.
T Consensus 846 ~~~F~~m~~~i~~~~v~~l~~~~ 868 (870)
T CHL00122 846 FNLFINMINHIRHLVIYDLFRSS 868 (870)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999998764
No 3
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.1e-216 Score=1889.86 Aligned_cols=675 Identities=42% Similarity=0.636 Sum_probs=622.0
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccC-
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR- 56 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~- 56 (890)
|||||||||||+|||+|+||||+| |||||||||+||++||+|+|+||||||||+.+
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~ 247 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKH 247 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCC
Confidence 899999999999999999999999 99999999999999999999999999999987
Q ss_pred CCCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCC-cc
Q 002707 57 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDV-AR 135 (890)
Q Consensus 57 ~~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~-~~ 135 (890)
++++++||+||.||||||||+|||||||||||+.+++++||| +|+||||||||||||||||||||||||.+... ..
T Consensus 248 ~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR---~~~fAIVDEvDSILIDEARTPLIISGp~~~~~~~~ 324 (1112)
T PRK12901 248 QPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQR---KHNYAIVDEVDSVLIDDARTPLIISGPVPKGDDQE 324 (1112)
T ss_pred CCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCc---CCceeEeechhhhhhccccCcEEEeCCCCCccHHH
Confidence 789999999999999999999999999999999999999999 99999999999999999999999999976554 77
Q ss_pred hHHHHHHHHHh------------------------------------------------cc-------------------
Q 002707 136 YPVAAKVAELL------------------------------------------------VQ------------------- 148 (890)
Q Consensus 136 y~~~~~~v~~l------------------------------------------------~~------------------- 148 (890)
|..++.+|..| .+
T Consensus 325 y~~~~~~V~~Lv~~Q~~~~~~~~~~a~~~i~~~~~~eg~~~l~r~~~g~Pknk~li~~L~e~~~~~~~~k~e~~~~~~n~ 404 (1112)
T PRK12901 325 FEELKPRVERLVEAQRKLATQFLAEAKKLIAEGDKKEGGLALLRAYRGLPKNKALIKFLSEEGIKALLQKTENFYMQDNN 404 (1112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhccccchhHHHHHhhhhhhhhhhhhhhhhhhhhhh
Confidence 87777655544 22
Q ss_pred --------CCCeEEeCCCCeeeccHhhHHHHHH------Hh----------cCCCCCC------------------CCCc
Q 002707 149 --------GLHYTVELKNNSVELTEEGIALAEM------AL----------ETNDLWD------------------ENDP 186 (890)
Q Consensus 149 --------~~~y~vd~~~k~v~Lte~G~~~~e~------~~----------~~~~l~~------------------~~~~ 186 (890)
+.||.+|++.++|+||++|+.+++. +| +++++|+ .+..
T Consensus 405 ~~~~~~~~~~dy~iDek~~~v~LTe~G~~~~e~~~~~~~~fv~pdi~~~~~~I~~ly~l~~~ek~~~k~~~~~~~~~~~~ 484 (1112)
T PRK12901 405 REMPEVDEELYFVIDEKNNSVELTDKGIDYITGNDEDPDFFVLPDIGTELAEIENEGGLDEEEEAEKKEELFQDYSVKSE 484 (1112)
T ss_pred hcccccCCCCceEEecCCCceeecHHHHHHHhcccCchhhhhccchhhhhhcchhhcccchhhhhhhhhhhhhhhhhHhH
Confidence 3599999999999999999999988 77 7788886 2336
Q ss_pred HHHHHHHHHHHHHhcccCcceEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcC
Q 002707 187 WARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYP 266 (890)
Q Consensus 187 ~~~~i~~Al~A~~l~~~d~dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~ 266 (890)
+.|+|++||+|+++|++|+||||+||+|+|||++|||+|+|||||+||||||||||||+|+++|+|+|+||||||||+|+
T Consensus 485 ~~h~i~qaLkA~~lf~kDvdYiV~dgkV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtIT~QnyFR~Y~ 564 (1112)
T PRK12901 485 RVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYH 564 (1112)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHhhCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCchhHHHHHHhhhCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHH
Q 002707 267 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYL 346 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~l 346 (890)
||+||||||+|++.||++||||+|++||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||.||+.||.|
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~l 644 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELL 644 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCceEeccCCcchhhHHHHHHhcCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccc
Q 002707 347 SDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVE 426 (890)
Q Consensus 347 s~~L~~~gi~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (890)
|++|+.+||||+|||| |+|++||+|||+||++|+|||||||||||||||||
T Consensus 645 S~~L~~~gI~H~VLNA--K~h~~EAeIVA~AG~~GaVTIATNMAGRGTDIkLg--------------------------- 695 (1112)
T PRK12901 645 SRMLKMRKIPHNVLNA--KLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLS--------------------------- 695 (1112)
T ss_pred HHHHHHcCCcHHHhhc--cchhhHHHHHHhcCCCCcEEEeccCcCCCcCcccc---------------------------
Confidence 9999999999999999 69999999999999999999999999999999999
Q ss_pred cccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCC
Q 002707 427 VDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLG 506 (890)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (890)
T Consensus 696 -------------------------------------------------------------------------------- 695 (1112)
T PRK12901 696 -------------------------------------------------------------------------------- 695 (1112)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHhhhhhhcccccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCch
Q 002707 507 PTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTS 586 (890)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~ 586 (890)
++|+++|||||||||||||||||||||||||||||||||+|||||||+|||+|| ++
T Consensus 696 ----------------------~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fg--s~ 751 (1112)
T PRK12901 696 ----------------------PEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFG--SE 751 (1112)
T ss_pred ----------------------hhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhC--cH
Confidence 479999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 002707 587 WAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQY 666 (890)
Q Consensus 587 ~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~ 666 (890)
++.++|+++++++|+||+|+|++++|++||++||++||++||+|++||+|||.||++||++|+.+|.+ +++...|.+|
T Consensus 752 ri~~~m~~~g~~ege~I~~~~i~ksIe~AQkkvE~~nf~iRK~lleYDdVmn~QR~vIY~~R~~iL~~--~~l~~~i~~~ 829 (1112)
T PRK12901 752 RIAKVMDRMGLKEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMG--ERLGMDIANM 829 (1112)
T ss_pred HHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999965 4799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCcc
Q 002707 667 MQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNL 746 (890)
Q Consensus 667 ~~~~i~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (890)
++++++.+++.+.. .|++++|..++...++... .+++ ..
T Consensus 830 i~~~i~~~v~~~~~------~~~~~~l~~~~~~~~~~~~-----~~~~------------------------------~~ 868 (1112)
T PRK12901 830 IYDVCEAIVENNKV------ANDYKGFKFELIRTLAMES-----PITE------------------------------EE 868 (1112)
T ss_pred HHHHHHHHHHHhcC------hhhHHHHHHHHHHHhCccc-----CCCH------------------------------HH
Confidence 99999999987753 4688888776543321100 0000 00
Q ss_pred ccccccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhh--------------------------
Q 002707 747 FRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQES-------------------------- 800 (890)
Q Consensus 747 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~y~~k~~~~-------------------------- 800 (890)
+ .....+.+.++|.+.+...|..|.+..
T Consensus 869 ~--------------------------~~~~~~~l~~~l~~~~~~~y~~K~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~ 922 (1112)
T PRK12901 869 F--------------------------NKLKKDELTDKLYDAALENYQRKMERIAEIAFPVIKQVYEEQGNMYERIVVPF 922 (1112)
T ss_pred h--------------------------hcCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccccccccccccc
Confidence 0 011345677888888888886654322
Q ss_pred ------------------cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHH
Q 002707 801 ------------------RYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISM 862 (890)
Q Consensus 801 ------------------~~~~~~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EYkkEAf~lF~~M 862 (890)
..+++.+++|||.++|++||.+|++||++||+||+||+||+||||||+.|||+|||+||..|
T Consensus 923 tdg~~~~~~~~~l~~~~~~~g~~~~~~~er~i~L~~ID~~W~eHL~~md~Lr~~I~lr~y~QkDPl~eYk~Eaf~lF~~m 1002 (1112)
T PRK12901 923 TDGKRTLNVVTNLKEAYETEGKEIVKDFEKNITLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFKNM 1002 (1112)
T ss_pred cccccceeeeccHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHH
Confidence 11567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhcccC
Q 002707 863 LSATRRLTVESLVQYWSS 880 (890)
Q Consensus 863 ~~~I~~~iv~~L~~~~~~ 880 (890)
+.+|+.+++++||+....
T Consensus 1003 ~~~i~~~iv~~l~~~~i~ 1020 (1112)
T PRK12901 1003 VDKVNREVISFLFKGEIP 1020 (1112)
T ss_pred HHHHHHHHHHHHHhheec
Confidence 999999999999997754
No 4
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.1e-215 Score=1864.95 Aligned_cols=678 Identities=42% Similarity=0.661 Sum_probs=636.8
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
|||||||||||++||+|+||||+| |||||||||+||++||+|||+|||||||+|.++
T Consensus 77 ~r~ydVQliGglvLh~G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~ 156 (925)
T PRK12903 77 KRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKAN 156 (925)
T ss_pred CCcCchHHHHHHHHhcCCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCC
Confidence 799999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcchH
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~ 137 (890)
+++++||+||+||||||||+|||||||||||+.+++++|+| +++||||||||||||||||||||||||.+.++++|.
T Consensus 157 ~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR---~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~ 233 (925)
T PRK12903 157 MDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQR---GLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYL 233 (925)
T ss_pred CChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCc---ccceeeeccchheeecccCCcccccCCCccchHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999998889999
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcCCCCCCCCC-cHHHHHHHHHHHHHhcccCcceEEeCCeEEE
Q 002707 138 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 216 (890)
Q Consensus 138 ~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~dg~I~i 216 (890)
.++.+++.|.++ ||++|++.++|+||++|+.++|++|++.|||+..+ +|.|||.+||+|+++|++|+||||+||+|+|
T Consensus 234 ~~~~~v~~L~~~-dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~I 312 (925)
T PRK12903 234 AADQFVRTLKED-DYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIEL 312 (925)
T ss_pred HHHHHHHhcccc-ceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEE
Confidence 999999999865 99999999999999999999999999999999765 8999999999999999999999999999999
Q ss_pred EeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhhCCCeEEcCCC
Q 002707 217 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 296 (890)
Q Consensus 217 VD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 296 (890)
||+||||+|+||+||+||||||||||||+|++||+|+|+||||||||+|+||+||||||+|++.||+++|||+|++||||
T Consensus 313 VDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTn 392 (925)
T PRK12903 313 VDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTN 392 (925)
T ss_pred EECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHh
Q 002707 297 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 376 (890)
Q Consensus 297 kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~ 376 (890)
+|++|+|+||.||.|+.+||.||+++|.++|++||||||||.||+.||.||++|++.||||+|||| |+|++||+|||+
T Consensus 393 kP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA--k~~e~EA~IIa~ 470 (925)
T PRK12903 393 KPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA--KQNAREAEIIAK 470 (925)
T ss_pred CCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecc--cchhhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 699999999999
Q ss_pred cCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002707 377 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 456 (890)
Q Consensus 377 AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (890)
||++|+||||||||||||||+|||
T Consensus 471 AG~~GaVTIATNMAGRGTDI~Lg~-------------------------------------------------------- 494 (925)
T PRK12903 471 AGQKGAITIATNMAGRGTDIKLSK-------------------------------------------------------- 494 (925)
T ss_pred CCCCCeEEEecccccCCcCccCch--------------------------------------------------------
Confidence 999999999999999999999993
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHhhhhhhcccccccchhhhhcCc
Q 002707 457 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 536 (890)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 536 (890)
+|+++||
T Consensus 495 -------------------------------------------------------------------------~V~~~GG 501 (925)
T PRK12903 495 -------------------------------------------------------------------------EVLELGG 501 (925)
T ss_pred -------------------------------------------------------------------------hHHHcCC
Confidence 6899999
Q ss_pred eEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCc-hHHHHHHHhcCCCCCCCccchhHHHHHHHH
Q 002707 537 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDT-SWAVDLISRITNDEDMPIEGDAIVRQLLGL 615 (890)
Q Consensus 537 L~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~i~~a 615 (890)
|||||||||||||||||||||||||||||||+|||||||+|||+|| + +++.++|.+++++ ||++++++++|++|
T Consensus 502 LhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~r~f~--~~~ri~~~~~~l~~~---~i~~~~i~~~ie~A 576 (925)
T PRK12903 502 LYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFS--NFDKIKEAFKKLGDD---EIKSKFFSKALLNA 576 (925)
T ss_pred cEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHHHHHhC--CHHHHHHHHHhcCCC---cccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 9 9999999999863 99999999999999
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCHHHHHH
Q 002707 616 QISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLK 695 (890)
Q Consensus 616 Q~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~~~~~~l~~ 695 (890)
|++||++||++||+|++||+|||.||++||++|++||.+ +++.+.|..|++++|+.+++.+.++. .+++|++++|..
T Consensus 577 QkkvE~~nfdiRK~ll~yDdV~n~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~~-~~~~w~~~~l~~ 653 (925)
T PRK12903 577 QKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIA--DDLSHVIEKMISRAVEQILKNSFIIL-KNNTINYKELVE 653 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhcCcc-chhhcCHHHHHH
Confidence 999999999999999999999999999999999999964 47999999999999999999988665 578899999987
Q ss_pred HHHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhcccccccccccc
Q 002707 696 EFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYR 775 (890)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 775 (890)
.+...++.+... .++. ..| ..
T Consensus 654 ~l~~~~~~i~~~---~~~~-------------------------------------------~~~-------------~~ 674 (925)
T PRK12903 654 FLNDNLLRITHF---KFSE-------------------------------------------KDF-------------EN 674 (925)
T ss_pred HHHHHhhhcccc---CCCH-------------------------------------------HHH-------------cc
Confidence 765432210000 0000 000 01
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhh--cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHH
Q 002707 776 ATTNLLRKYLGDILIASYLNVVQES--RYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKI 853 (890)
Q Consensus 776 ~~~~~~~~~l~~~i~~~y~~k~~~~--~~~~~~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EYkk 853 (890)
.+.+++.+++.+.+...|..+.+.. ..+++.++++||.+||++||.+|++||++||+||+|||||+||||||+.|||+
T Consensus 675 ~~~~~l~~~l~~~~~~~y~~k~~~~~~~~g~~~~~~~er~i~L~~iD~~W~eHL~~md~Lr~~I~lR~y~QkdPl~eYk~ 754 (925)
T PRK12903 675 YHKEELAQYLIEALNEIYFKKRQVILDKIALNTFFESERYIILSALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQVYTE 754 (925)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCChHHHHHH
Confidence 2446788999999999997764432 12677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccC
Q 002707 854 DGCRFFISMLSATRRLTVESLVQYWSS 880 (890)
Q Consensus 854 EAf~lF~~M~~~I~~~iv~~L~~~~~~ 880 (890)
|||+||+.|+.+|+.+++++||+++..
T Consensus 755 Ea~~~F~~m~~~i~~~~v~~l~~~~~~ 781 (925)
T PRK12903 755 EGTKKFNILLQEIAYDVIVSLFNNPNA 781 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999998754
No 5
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.7e-212 Score=1858.51 Aligned_cols=712 Identities=41% Similarity=0.673 Sum_probs=656.1
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
|||||||||||++||+|+||||+| |||+|||||+||++||+|+|++||||||+++++
T Consensus 81 m~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~ 160 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPF 160 (913)
T ss_pred CCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCC
Confidence 899999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcchH
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~ 137 (890)
+++++|+++|.||||||||++||||||||||+.+++++|+| +++||||||||||||||||||||||||.+.....|.
T Consensus 161 ~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr---~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~ 237 (913)
T PRK13103 161 QPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQR---ELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYI 237 (913)
T ss_pred CCHHHHHHHhcCCEEEEcccccccchhhccceechhhhccc---ccceeEechhhheeccccCCceeecCCCccchHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999998888999
Q ss_pred HHHHHHHHhccC-----------CCeEEeCCCCeeeccHhhHHHHHHHh---cC----CCCCCCCC-cHHHHHHHHHHHH
Q 002707 138 VAAKVAELLVQG-----------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 198 (890)
Q Consensus 138 ~~~~~v~~l~~~-----------~~y~vd~~~k~v~Lte~G~~~~e~~~---~~----~~l~~~~~-~~~~~i~~Al~A~ 198 (890)
.++.+++.|++. .||.+|++.++|+||++|+.++++++ ++ .++|+..+ .+.|||.+||+|+
T Consensus 238 ~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~ 317 (913)
T PRK13103 238 EINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAH 317 (913)
T ss_pred HHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHH
Confidence 999999999542 59999999999999999999999987 55 67888765 7999999999999
Q ss_pred HhcccCcceEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhH
Q 002707 199 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 278 (890)
Q Consensus 199 ~l~~~d~dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te 278 (890)
++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|+||+||||||+|+
T Consensus 318 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te 397 (913)
T PRK13103 318 KLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTE 397 (913)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCce
Q 002707 279 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 358 (890)
Q Consensus 279 ~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~ 358 (890)
+.||+++|||+|++||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||.||+.||.||++|++.||||+
T Consensus 398 ~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~ 477 (913)
T PRK13103 398 AFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHK 477 (913)
T ss_pred HHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcchhhHHHHHHhcCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhh
Q 002707 359 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 438 (890)
Q Consensus 359 vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (890)
|||| |||++||+|||+||++|+||||||||||||||+|||||++..+ . +. +
T Consensus 478 VLNA--k~~~~EA~IIa~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~----~-----~~-~----------------- 528 (913)
T PRK13103 478 VLNA--KYHEKEAEIIAQAGRPGALTIATNMAGRGTDILLGGNWEVEVA----A-----LE-N----------------- 528 (913)
T ss_pred Hhcc--ccchhHHHHHHcCCCCCcEEEeccCCCCCCCEecCCchHHHHH----h-----hh-h-----------------
Confidence 9999 6999999999999999999999999999999999999986321 0 00 0
Q ss_pred hhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHhhhh
Q 002707 439 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 518 (890)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (890)
.....+.
T Consensus 529 -------------------------------------------------------------------------~~~~~~~ 535 (913)
T PRK13103 529 -------------------------------------------------------------------------PTPEQIA 535 (913)
T ss_pred -------------------------------------------------------------------------hhHHHHH
Confidence 0012345
Q ss_pred hhcccccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHHHHHhcCCC
Q 002707 519 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 598 (890)
Q Consensus 519 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~ 598 (890)
+++..|.+++++|+++|||||||||||||||||||||||||||||||||+|||||||+||++|| ++++.++|++++++
T Consensus 536 ~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr~fg--~~~~~~~~~~~~~~ 613 (913)
T PRK13103 536 QIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMRIFA--SDRVKNFMKALGMQ 613 (913)
T ss_pred HHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHhhC--cHHHHHHHHHcCCC
Confidence 6778899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhc
Q 002707 599 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 678 (890)
Q Consensus 599 ~~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~ 678 (890)
+++||+|++++++|++||++||++||++||+|++||+|||.||++||++|+.||.+ +++.+.|.+|++++++++++.+
T Consensus 614 e~~~I~~~~i~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~ 691 (913)
T PRK13103 614 SGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNSLLAA--ENIGETIAEFREEVLNATISQH 691 (913)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999965 4799999999999999999988
Q ss_pred CCCCCCCCccCHHHHHHHHHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhh
Q 002707 679 VDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLK 758 (890)
Q Consensus 679 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 758 (890)
.++...+++|++++|...+...++.... +.
T Consensus 692 ~~~~~~~e~~~~~~l~~~~~~~~~~~~~-----~~--------------------------------------------- 721 (913)
T PRK13103 692 IPPQSLPEQWDVAGLEAALASDFAVKLP-----IQ--------------------------------------------- 721 (913)
T ss_pred cCCccChhhcCHHHHHHHHHHHcCCCCC-----HH---------------------------------------------
Confidence 7666567889999988766533211000 00
Q ss_pred hhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 002707 759 RWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVN 838 (890)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~y~~k~~~~~~~~~~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~ 838 (890)
.+ .++ ......+++.++|.+.+.+.|..|+ ..++++.+++|||.++|++||.+|++||++||+||+|||
T Consensus 722 ~~----~~~-----~~~~~~~~l~~~l~~~~~~~y~~k~--~~~~~~~~~~~er~i~L~~iD~~W~eHL~~md~Lr~~I~ 790 (913)
T PRK13103 722 QW----LDE-----DDHLYEETLREKILEELLAAYNEKE--DQAGAEALRTFEKQILLRVLDDLWKDHLSTMDHLRHGIH 790 (913)
T ss_pred Hh----Hhh-----hccCCHHHHHHHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00 000 0112346788999999999997764 346888999999999999999999999999999999999
Q ss_pred cccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccCcc
Q 002707 839 VRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSSPM 882 (890)
Q Consensus 839 LRsYgQKDPL~EYkkEAf~lF~~M~~~I~~~iv~~L~~~~~~~~ 882 (890)
||+||||||+.|||+|||++|+.|+.+|+.+++++||++..+..
T Consensus 791 lr~y~QkdPl~eYk~Ea~~~F~~m~~~i~~~~v~~l~~~~~~~~ 834 (913)
T PRK13103 791 LRGYAQKNPKQEYKRESFTLFQELLDSIKRDTIRVLSHVQVRRE 834 (913)
T ss_pred hhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999775433
No 6
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.5e-206 Score=1807.29 Aligned_cols=709 Identities=40% Similarity=0.640 Sum_probs=653.8
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
|||||||||||++||+|+||||+| |||+|+|||+||++||+|||+|||||||++.++
T Consensus 81 m~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~ 160 (908)
T PRK13107 81 MRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAG 160 (908)
T ss_pred CCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCC
Confidence 899999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcchH
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~ 137 (890)
+++.+|+++|.||||||||++||||||||||+.+++++||| +++||||||||||||||||||||||||.+.+.+.|.
T Consensus 161 ~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr---~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~ 237 (908)
T PRK13107 161 LGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQR---PLHYALIDEVDSILIDEARTPLIISGAAEDSSELYI 237 (908)
T ss_pred CCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhcc---ccceeeecchhhhccccCCCceeecCCCccchHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999998888999
Q ss_pred HHHHHHHHhccC-----------CCeEEeCCCCeeeccHhhHHHHHHHh---cC----CCCCCCCC-cHHHHHHHHHHHH
Q 002707 138 VAAKVAELLVQG-----------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 198 (890)
Q Consensus 138 ~~~~~v~~l~~~-----------~~y~vd~~~k~v~Lte~G~~~~e~~~---~~----~~l~~~~~-~~~~~i~~Al~A~ 198 (890)
.++.++..|.+. .||.+|++.++|+||++|+.++++++ ++ ++||+..+ .|.|||.+||+|+
T Consensus 238 ~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~ 317 (908)
T PRK13107 238 KINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAH 317 (908)
T ss_pred HHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHH
Confidence 999999998752 59999999999999999999999987 54 68998765 7899999999999
Q ss_pred HhcccCcceEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhH
Q 002707 199 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 278 (890)
Q Consensus 199 ~l~~~d~dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te 278 (890)
+||++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|+||+||||||+|+
T Consensus 318 ~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te 397 (908)
T PRK13107 318 TLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTE 397 (908)
T ss_pred HHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCce
Q 002707 279 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 358 (890)
Q Consensus 279 ~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~ 358 (890)
+.||+++|||+|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.|++.||.||.+|++.||+|+
T Consensus 398 ~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~ 477 (908)
T PRK13107 398 AFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHE 477 (908)
T ss_pred HHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcchhhHHHHHHhcCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhh
Q 002707 359 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 438 (890)
Q Consensus 359 vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (890)
+||| +++++||+||++||++|+||||||||||||||||||||++..+ . +. + |
T Consensus 478 vLna--k~~~~Ea~ii~~Ag~~G~VtIATnmAGRGTDIkLggn~~~~~~----~-----~~-~-~--------------- 529 (908)
T PRK13107 478 VLNA--KFHEREAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIE----A-----LE-N-P--------------- 529 (908)
T ss_pred eccC--cccHHHHHHHHhCCCCCcEEEecCCcCCCcceecCCchHHhhh----h-----hc-c-h---------------
Confidence 9999 6899999999999999999999999999999999999986211 0 00 0 0
Q ss_pred hhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHhhhh
Q 002707 439 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 518 (890)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (890)
-...+.
T Consensus 530 --------------------------------------------------------------------------~~~~~~ 535 (908)
T PRK13107 530 --------------------------------------------------------------------------TAEQKA 535 (908)
T ss_pred --------------------------------------------------------------------------hhHHHH
Confidence 013456
Q ss_pred hhcccccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHHHHHhcCCC
Q 002707 519 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 598 (890)
Q Consensus 519 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~ 598 (890)
+++..|.+++++|+++|||||||||||||||||||||||||||||||||+|||||||+|||+|| ++++.++|++++++
T Consensus 536 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r~f~--~~~~~~~~~~~~~~ 613 (908)
T PRK13107 536 KIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFA--SDRVSGMMKKLGME 613 (908)
T ss_pred HHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHHHHhC--hHHHHHHHHHcCCC
Confidence 6778899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhc
Q 002707 599 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 678 (890)
Q Consensus 599 ~~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~ 678 (890)
+++||+|++++++|++||++||++||++||+|++||+|||.||++||++|+.||.+ +++.+.|.+|++++++++++.+
T Consensus 614 e~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~ll~yD~V~n~QR~vIY~~R~~iL~~--~~~~~~i~~~~~~~i~~~v~~~ 691 (908)
T PRK13107 614 EGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNELMDA--ESIEDTIKNIQDDVINGVIDQY 691 (908)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999964 4799999999999999999987
Q ss_pred CCCCCCCCccCHHHHHHHHHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhh
Q 002707 679 VDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLK 758 (890)
Q Consensus 679 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 758 (890)
+++...++.|++++|...+...++.... ++.
T Consensus 692 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~-------------------------------------------- 722 (908)
T PRK13107 692 IPPQSVEELWDVPGLEQRLHQEFMLKLP-----IQE-------------------------------------------- 722 (908)
T ss_pred cCCCcchhhccHHHHHHHHHHHcCCCCC-----HHH--------------------------------------------
Confidence 6554446789999987766533211000 000
Q ss_pred hhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 002707 759 RWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVN 838 (890)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~y~~k~~~~~~~~~~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~ 838 (890)
+ .++ ....+.+++.++|.+.+.+.|..|+ ..++++.++++||.++|++||++|++||++||+||+||+
T Consensus 723 -~----~~~-----~~~~~~~~~~~~l~~~~~~~y~~k~--~~~~~~~~~~~er~i~L~~iD~~W~eHL~~md~Lr~~I~ 790 (908)
T PRK13107 723 -W----LDK-----EDDLHEETLRERIVTSWSDAYKAKE--EMVGAQVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIH 790 (908)
T ss_pred -h----hhh-----hccCCHHHHHHHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 000 0112456788999999999997764 346788999999999999999999999999999999999
Q ss_pred cccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q 002707 839 VRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWS 879 (890)
Q Consensus 839 LRsYgQKDPL~EYkkEAf~lF~~M~~~I~~~iv~~L~~~~~ 879 (890)
||+||||||+.|||+|||++|+.|+.+|+.+++++||++..
T Consensus 791 lr~y~QkdPl~eYk~Ea~~lF~~m~~~i~~~~~~~l~~~~~ 831 (908)
T PRK13107 791 LRGYAQKNPKQEYKRESFELFQQLLETLKHDVISVLSKVQV 831 (908)
T ss_pred hhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999765
No 7
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.1e-205 Score=1797.39 Aligned_cols=710 Identities=39% Similarity=0.626 Sum_probs=655.2
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
|||||||||||+|||+|+||||+| |||+|+|||+||++||+|||++|||+||++.++
T Consensus 81 ~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg 160 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPD 160 (896)
T ss_pred CCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCC
Confidence 899999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcchH
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~ 137 (890)
+++++|+.+|.|||||||+++||||||||+|+.+.+++|+| +++||||||||||||||||||||||||.+.+.+.|.
T Consensus 161 ~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r---~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~ 237 (896)
T PRK13104 161 MSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQR---ELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYI 237 (896)
T ss_pred CCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhcc---ccceEEeccHhhhhhhccCCceeeeCCCccchHHHH
Confidence 99999999999999999999999999999999988899999 999999999999999999999999999998889999
Q ss_pred HHHHHHHHhccC------CCeEEeCCCCeeeccHhhHHHHHHHh---cC----CCCCCCCC-cHHHHHHHHHHHHHhccc
Q 002707 138 VAAKVAELLVQG------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAKEFYRR 203 (890)
Q Consensus 138 ~~~~~v~~l~~~------~~y~vd~~~k~v~Lte~G~~~~e~~~---~~----~~l~~~~~-~~~~~i~~Al~A~~l~~~ 203 (890)
.++.+++.|+++ .||.+|++.++|+||++|+.++|+++ ++ ++||+..+ .+.|||.+||+|+++|++
T Consensus 238 ~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~ 317 (896)
T PRK13104 238 KINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHR 317 (896)
T ss_pred HHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcC
Confidence 999999999876 69999999999999999999999988 66 78998655 799999999999999999
Q ss_pred CcceEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHH
Q 002707 204 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 283 (890)
Q Consensus 204 d~dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~ 283 (890)
|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|+||+||||||+|++.||+
T Consensus 318 d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~ 397 (896)
T PRK13104 318 DIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQ 397 (896)
T ss_pred CCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccC
Q 002707 284 KMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 363 (890)
Q Consensus 284 ~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~ 363 (890)
++|||+|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.|++.||.||.+|++.||+|++|||
T Consensus 398 ~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLna- 476 (896)
T PRK13104 398 QIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNA- 476 (896)
T ss_pred HHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHhcCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhc
Q 002707 364 PKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLG 443 (890)
Q Consensus 364 ~k~~~~EA~IIa~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (890)
+++++||+||++||++|+||||||||||||||+|||||++..+ .. +.
T Consensus 477 -k~~q~Ea~iia~Ag~~G~VtIATNmAGRGtDI~Lggn~~~~~~----~~---------~~------------------- 523 (896)
T PRK13104 477 -KFHEKEAQIIAEAGRPGAVTIATNMAGRGTDIVLGGSLAADLA----NL---------PA------------------- 523 (896)
T ss_pred -CCChHHHHHHHhCCCCCcEEEeccCccCCcceecCCchhhhhh----cc---------cc-------------------
Confidence 6899999999999999999999999999999999999986210 00 00
Q ss_pred chhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHhhhhhhccc
Q 002707 444 SSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVH 523 (890)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (890)
..-...+.+++..
T Consensus 524 -------------------------------------------------------------------~~~~~~~~~~~~~ 536 (896)
T PRK13104 524 -------------------------------------------------------------------DASEQEKEAVKKE 536 (896)
T ss_pred -------------------------------------------------------------------chhhHHHHHHHHH
Confidence 0002345667788
Q ss_pred ccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHHHHHhcCCCCCCCc
Q 002707 524 CSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPI 603 (890)
Q Consensus 524 ~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i 603 (890)
|.+++++|+++|||||||||||||||||||||||||||||||||+|||||||+||++|| ++++.++|+++++++++||
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~--~~~~~~~~~~~~~~~~~~i 614 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFA--SERVASMMRRLGMQPGEPI 614 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhC--hHHHHHHHHHcCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002707 604 EGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 683 (890)
Q Consensus 604 ~~~~~~~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~ 683 (890)
++++++++|++||++||++||++||++++||+|||.||++||++|++||.+ +++.+.+..|++++|+++++.+..+..
T Consensus 615 ~~~~~~~~i~~aQ~~vE~~~~~~Rk~ll~yd~V~n~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~~~ 692 (896)
T PRK13104 615 EHSLVTRAIENAQRKLEGHHFDVRKQLLDYDNVANDQRQVIYTQRASIMAM--TDTQEVVEMMREEVMDSLVDTYIPPQS 692 (896)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999965 478999999999999999998865444
Q ss_pred CCCccCHHHHHHHHHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhh
Q 002707 684 HPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAI 763 (890)
Q Consensus 684 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 763 (890)
.+++|++++|...+...++.... + + . |
T Consensus 693 ~~~~~~~~~l~~~~~~~~~~~~~-----~--~--------------------------~-----------------~--- 719 (896)
T PRK13104 693 LEDQWDPQALSDVLSDEFKIKAP-----V--P--------------------------D-----------------W--- 719 (896)
T ss_pred chhhccHHHHHHHHHHhcCCCCC-----h--h--------------------------h-----------------h---
Confidence 46789999998766543211000 0 0 0 0
Q ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccccc
Q 002707 764 CSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFG 843 (890)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~y~~k~~~~~~~~~~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~LRsYg 843 (890)
.++ ....+.++++++|.+.+...|..++ ..++++.+++|||.++|++||.+|++||++||+||+|||||+||
T Consensus 720 -~~~-----~~~~~~~~~~~~l~~~~~~~y~~k~--~~~g~~~~~~~er~i~L~~iD~~W~ehL~~md~Lr~~I~lr~y~ 791 (896)
T PRK13104 720 -IDK-----DHSIQPEQIKEKILALAIEHYDEKV--RKVGRPVISQFEKSIILQTLDNHWREHLAAMDQLRQGIHLRGYA 791 (896)
T ss_pred -hhh-----hccCCHHHHHHHHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 000 0112456789999999999997764 35688899999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q 002707 844 HRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWS 879 (890)
Q Consensus 844 QKDPL~EYkkEAf~lF~~M~~~I~~~iv~~L~~~~~ 879 (890)
||||+.|||+|||+||+.|+.+|+.+++++||+..+
T Consensus 792 QkdPl~eYk~Ea~~~F~~m~~~i~~~~v~~l~~~~~ 827 (896)
T PRK13104 792 QKDPKQEYKKEAFSLFTMMLDNLKYEVIRILSSVEI 827 (896)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999643
No 8
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.6e-203 Score=1782.05 Aligned_cols=711 Identities=46% Similarity=0.752 Sum_probs=664.1
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
|||||||||||++||+|+||||+| |||+|+|||+||++||+|+|++|||+||+++++
T Consensus 80 ~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~ 159 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSG 159 (830)
T ss_pred CCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCC
Confidence 799999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcchH
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~ 137 (890)
+++++|+++|.|||||||+++||||||||||+.+++++++| +++||||||||||||||||||||||||.+.+.++|.
T Consensus 160 ~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r---~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~ 236 (830)
T PRK12904 160 MSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQR---GLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYK 236 (830)
T ss_pred CCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhccc---ccceEEEechhhheeccCCCceeeECCCCcccHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcCCCCCCCCC-cHHHHHHHHHHHHHhcccCcceEEeCCeEEE
Q 002707 138 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 216 (890)
Q Consensus 138 ~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~dg~I~i 216 (890)
.++.+++.|.++.||.+|++.++++||++|+.++|+++++++||+..+ +|.|||.+||+|+++|++|+||||+||+|+|
T Consensus 237 ~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~i 316 (830)
T PRK12904 237 RANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVI 316 (830)
T ss_pred HHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 999999999988899999999999999999999999999999999766 8999999999999999999999999999999
Q ss_pred EeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhhCCCeEEcCCC
Q 002707 217 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 296 (890)
Q Consensus 217 VD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 296 (890)
||++|||+|+||+||+||||||||||||+|++||+|+|+||||||||+|+||+||||||+|++.||+++|||+|++||||
T Consensus 317 vDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtn 396 (830)
T PRK12904 317 VDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTN 396 (830)
T ss_pred EECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHh
Q 002707 297 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 376 (890)
Q Consensus 297 kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~ 376 (890)
+|++|+|+||.||.|..+||.||+++|.++|.+||||||||.|++.||.||.+|++.||+|++||| +++++|++|++.
T Consensus 397 kp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLna--kq~eREa~Iia~ 474 (830)
T PRK12904 397 RPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA--KNHEREAEIIAQ 474 (830)
T ss_pred CCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccC--chHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 589999999999
Q ss_pred cCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002707 377 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 456 (890)
Q Consensus 377 AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (890)
||++|+||||||||||||||+|||||+++++..+..
T Consensus 475 Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~-------------------------------------------- 510 (830)
T PRK12904 475 AGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEE-------------------------------------------- 510 (830)
T ss_pred cCCCceEEEecccccCCcCccCCCchhhhhhhhhhh--------------------------------------------
Confidence 999999999999999999999999999998755421
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHhhhhhhcccccccchhhhhcCc
Q 002707 457 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 536 (890)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 536 (890)
.+...+.+++.+|.+++++|+++||
T Consensus 511 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~v~~~GG 535 (830)
T PRK12904 511 -------------------------------------------------------ETEEQIAKIKAEWQEEHEEVLEAGG 535 (830)
T ss_pred -------------------------------------------------------hhhHHHHHHHHHHhhhhhhHHHcCC
Confidence 0123455677889999999999999
Q ss_pred eEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHHHHHhcCCCCCCCccchhHHHHHHHHH
Q 002707 537 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 616 (890)
Q Consensus 537 L~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 616 (890)
|||||||||||||||||||||||||||||||+|||||||+||++|| ++++.++|.++++++++||++++++++|++||
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 613 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFG--SDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQ 613 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHHHhhc--hHHHHHHHHHcCCCCCCccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHH
Q 002707 617 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 696 (890)
Q Consensus 617 ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~~~~~~l~~~ 696 (890)
++||++||++||++++||+|||.||++||++|++||.+ +++.+.|.+|++++|+++++.+..+...+++|++++|...
T Consensus 614 ~~~e~~~~~~Rk~~l~yd~v~~~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 691 (830)
T PRK12904 614 KKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEG--EDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEA 691 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHhcCCCcChhhcCHHHHHHH
Confidence 99999999999999999999999999999999999964 4799999999999999999998766555778999999877
Q ss_pred HHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccc
Q 002707 697 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 776 (890)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 776 (890)
+...++.... + ..|.. + ..
T Consensus 692 l~~~~~~~~~-----~---------------------------------------------~~~~~---~--------~~ 710 (830)
T PRK12904 692 LKTDFGLELP-----I---------------------------------------------EEWLE---E--------GL 710 (830)
T ss_pred HHHHcCCCCC-----h---------------------------------------------hHHhh---c--------CC
Confidence 6543211000 0 00000 0 11
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHHHHH
Q 002707 777 TTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGC 856 (890)
Q Consensus 777 ~~~~~~~~l~~~i~~~y~~k~~~~~~~~~~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EYkkEAf 856 (890)
+.+++++++.+.+...|..+++ .++++.++++||.++|++||.+|++||++|++||+|||||+||||||+.|||+|||
T Consensus 711 ~~~~~~~~l~~~~~~~y~~k~~--~~g~e~~~~~eR~i~L~~iD~~W~eHL~~md~LRegI~lR~y~QkdPl~eY~~ea~ 788 (830)
T PRK12904 711 DEEELRERILEAAEEAYEEKEE--ELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEYKREGF 788 (830)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHH
Confidence 3467889999999999976643 46788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcccCcc
Q 002707 857 RFFISMLSATRRLTVESLVQYWSSPM 882 (890)
Q Consensus 857 ~lF~~M~~~I~~~iv~~L~~~~~~~~ 882 (890)
+||+.|+.+|+.+++++||+++..||
T Consensus 789 ~~F~~m~~~I~~~iv~~l~~~~i~~c 814 (830)
T PRK12904 789 ELFEEMLDSIKEEVVRTLMKVQIDPC 814 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 99999999999999999998765443
No 9
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.8e-203 Score=1743.70 Aligned_cols=620 Identities=38% Similarity=0.599 Sum_probs=583.2
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
||||||||+||++||+|+||||+| |||+|+|||+||++||+|||++||||||+++++
T Consensus 77 ~r~ydvQlig~l~Ll~G~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~ 156 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEE 156 (764)
T ss_pred CCcchHHHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 799999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcchH
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~ 137 (890)
+++++|+++|+||||||||+|||||||||||+.+++++|+| +|+||||||||||||||||||||||||.+.. +.|.
T Consensus 157 ~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R---~~~faIVDEvDSiLIDeArtPLiISg~~~~~-~~y~ 232 (764)
T PRK12326 157 STPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSP---NPDVAIIDEADSVLVDEALVPLVLAGSTPGE-APRG 232 (764)
T ss_pred CCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCC---ccceeeecchhhheeccccCceeeeCCCcch-hHHH
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999999887 8899
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcCCCCCCCCC--cHHHHHHHHHHHHHhcccCcceEEeCCeEE
Q 002707 138 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND--PWARFVMNALKAKEFYRRDVQYIVRNGKAL 215 (890)
Q Consensus 138 ~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~--~~~~~i~~Al~A~~l~~~d~dYiV~dg~I~ 215 (890)
.++.+++.|.++.||.+|++.++++||++|+.++|+++++.++|++++ .+.|||++||+|+++|++|+||||+||+|+
T Consensus 233 ~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~ 312 (764)
T PRK12326 233 EIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVH 312 (764)
T ss_pred HHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEE
Confidence 999999999998999999999999999999999999999999998766 588999999999999999999999999999
Q ss_pred EEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhhCCCeEEcCC
Q 002707 216 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 295 (890)
Q Consensus 216 iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt 295 (890)
|||++|||+|+||+||+||||||||||||+|++|++|+|+||||||||+|++|+||||||+++++||+++|||+|++|||
T Consensus 313 iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPt 392 (764)
T PRK12326 313 LINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPP 392 (764)
T ss_pred EEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH
Q 002707 296 NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA 375 (890)
Q Consensus 296 ~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa 375 (890)
|+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||++||.||.+|++.||||+|||| ++|++||+|||
T Consensus 393 nkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNA--k~~~~EA~IIa 470 (764)
T PRK12326 393 NKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNA--KNDAEEARIIA 470 (764)
T ss_pred CCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeecc--CchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 68999999999
Q ss_pred hcCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHH
Q 002707 376 QAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAAL 455 (890)
Q Consensus 376 ~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (890)
+||++|+||||||||||||||+|||||+
T Consensus 471 ~AG~~gaVTIATNMAGRGTDIkLg~~~~---------------------------------------------------- 498 (764)
T PRK12326 471 EAGKYGAVTVSTQMAGRGTDIRLGGSDE---------------------------------------------------- 498 (764)
T ss_pred hcCCCCcEEEEecCCCCccCeecCCCcc----------------------------------------------------
Confidence 9999999999999999999999999875
Q ss_pred HHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHhhhhhhcccccccchhhhhcC
Q 002707 456 LAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLG 535 (890)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 535 (890)
+++++|+++|
T Consensus 499 ----------------------------------------------------------------------~~~~~V~~~G 508 (764)
T PRK12326 499 ----------------------------------------------------------------------ADRDRVAELG 508 (764)
T ss_pred ----------------------------------------------------------------------cchHHHHHcC
Confidence 1337999999
Q ss_pred ceEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHHHHHhcCCCCCCCccchhHHHHHHHH
Q 002707 536 GLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGL 615 (890)
Q Consensus 536 GL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~a 615 (890)
||||||||||||+|||||||||||||||||||+|||||||+||++|| +++ + .+.++++++||++++++++|++|
T Consensus 509 GLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl~~~f~--~~~--~--~~~~~~~~~~i~~~~~~~~i~~a 582 (764)
T PRK12326 509 GLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAANL--AGE--K--LPAQPDEDGRITSPKAADLVDHA 582 (764)
T ss_pred CcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchhHHHhcC--chh--h--hhcCCCCCCcCcChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 875 2 23477889999999999999999
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCHHHHHH
Q 002707 616 QISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLK 695 (890)
Q Consensus 616 Q~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~~~~~~l~~ 695 (890)
|++||++||++||++++||+|||.||++||++|++||+++ ++.+.+ ...+
T Consensus 583 Qk~vE~~~~~~Rk~~~~yd~v~~~QR~~iy~~R~~il~~~--~~~~~~--------~~~~-------------------- 632 (764)
T PRK12326 583 QRVAEGQLLEIHANTWRYNQLIAQQRAIIVERRERLLRTD--TAWEEL--------AELA-------------------- 632 (764)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--hHHHHH--------HHHH--------------------
Confidence 9999999999999999999999999999999999999543 343220 0000
Q ss_pred HHHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhcccccccccccc
Q 002707 696 EFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYR 775 (890)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 775 (890)
.
T Consensus 633 ----------~--------------------------------------------------------------------- 633 (764)
T PRK12326 633 ----------P--------------------------------------------------------------------- 633 (764)
T ss_pred ----------H---------------------------------------------------------------------
Confidence 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHHHH
Q 002707 776 ATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDG 855 (890)
Q Consensus 776 ~~~~~~~~~l~~~i~~~y~~k~~~~~~~~~~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EYkkEA 855 (890)
..|..+ ...++++.+++++|.++|++||.+|++||++|++||+|||||+||||||+.|||+||
T Consensus 634 ---------------~~~~~~--~~~~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~q~dPl~ey~~ea 696 (764)
T PRK12326 634 ---------------ERYAEL--AEEVDEEVLEQAARQIMLYHLDRGWADHLAYLADVRESIHLRALGRQNPLDEFHRMA 696 (764)
T ss_pred ---------------HHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHH
Confidence 000000 112456689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcccC
Q 002707 856 CRFFISMLSATRRLTVESLVQYWSS 880 (890)
Q Consensus 856 f~lF~~M~~~I~~~iv~~L~~~~~~ 880 (890)
|++|+.|+.+|+.+++++++++..+
T Consensus 697 ~~~F~~m~~~i~~~~~~~~~~~~~~ 721 (764)
T PRK12326 697 VDAFKSLAADAVERAQETFETAEIT 721 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHheEee
Confidence 9999999999999999999987654
No 10
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7e-201 Score=1763.36 Aligned_cols=670 Identities=42% Similarity=0.690 Sum_probs=616.3
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
|+|||||||||+|||+|+||||+| |||||||||+||++||+|||+|||||||||.++
T Consensus 137 m~~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~ 216 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNT 216 (1025)
T ss_pred ccccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCC
Confidence 899999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCC-Ccch
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD-VARY 136 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~-~~~y 136 (890)
+++++||++|.||||||||+|||||||||||+.+++++||| +|+||||||||||||||||||||||||.+.. ...|
T Consensus 217 ~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR---~~~faIVDEvDSvLIDeARTPLIISgp~~~~~~~~y 293 (1025)
T PRK12900 217 MRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQR---DFYFAIVDEVDSVLIDEARTPLIISGPVPNADNSKF 293 (1025)
T ss_pred CCHHHHHHhCCCcceecCCCccccccchhccccchhhhhcc---CCceEEEechhhhhhccccCceEEeCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999996655 5556
Q ss_pred HHHH-------------------------------------------------HHHHHhcc-------------------
Q 002707 137 PVAA-------------------------------------------------KVAELLVQ------------------- 148 (890)
Q Consensus 137 ~~~~-------------------------------------------------~~v~~l~~------------------- 148 (890)
..+. .+++.|.+
T Consensus 294 ~~~~~~~~~lv~~q~~l~~~~l~ea~~~~~~~~~~~~~~~~l~~~~~g~pknk~lik~L~~~~~~~~~~~~e~~y~~dn~ 373 (1025)
T PRK12900 294 QEIKPWIEQLVRAQQNLVASYLTEAEKALKTKPNDFDAGLALLRVKRGQPKNSRFIKMLSQQGIAKLVQSTENEYLKDNS 373 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhhhhhccCcchhHHHHHhhhhhhhhhhhhhhhHhhhhhh
Confidence 4433 22222332
Q ss_pred --------CCCeEEeCCCCeeeccHhhHHHHHHHhc--------------------------------CCC---CCCCCC
Q 002707 149 --------GLHYTVELKNNSVELTEEGIALAEMALE--------------------------------TND---LWDEND 185 (890)
Q Consensus 149 --------~~~y~vd~~~k~v~Lte~G~~~~e~~~~--------------------------------~~~---l~~~~~ 185 (890)
+.||.+|++.++|+||++|+.+++.+++ .++ +|..+.
T Consensus 374 ~~~~~~~~~~~~~iDek~~~v~LTe~G~~~~e~~~~~d~~~Fvlp~~~~~~~~ie~~~~l~~~~~~~~~~~l~~~~~~~~ 453 (1025)
T PRK12900 374 SRMHEVDDELYFAVDEKANTIDLTDKGREFLSKLSHQDSDLFLLPDVGTEIAAIESDASLSAADKIKKKDEVYRLFAERS 453 (1025)
T ss_pred hhccccCCCCeEEEEcCCCeeeecHhHHHHHHhhhccCchhhcccchhhhhhhhhcccccchhhhhhhhhHHHhhcchhh
Confidence 2489999999999999999999998521 123 444555
Q ss_pred cHHHHHHHHHHHHHhcccCcceEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhc
Q 002707 186 PWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLY 265 (890)
Q Consensus 186 ~~~~~i~~Al~A~~l~~~d~dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y 265 (890)
.+.|+|.+||+|++||++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|
T Consensus 454 ~~~h~i~qaLkA~~lf~kD~~YvV~dgkV~IVDe~TGRim~gRr~sdGLHQaIEaKE~v~i~~e~~t~AtIT~QnfFr~Y 533 (1025)
T PRK12900 454 ERLHNISQLLKAYSLFERDDEYVVQNGQVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGETQTMATITIQNFFRLY 533 (1025)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCccCCCCCcchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCchhHHHHHHhhhCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHH
Q 002707 266 PKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY 345 (890)
Q Consensus 266 ~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ 345 (890)
+||+||||||+|++.||++||+|+|++||||+|++|+|+||.||.|..+||.||+++|.+.|.+||||||||.|++.||.
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY~L~Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~ 613 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIYKLDVVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSET 613 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHhCCcEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCceEeccCCcchhhHHHHHHhcCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhccc
Q 002707 346 LSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNV 425 (890)
Q Consensus 346 ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~ 425 (890)
||.+|++.||+|++||| +++++||+|++.||++|+||||||||||||||+||
T Consensus 614 Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~-------------------------- 665 (1025)
T PRK12900 614 LSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLG-------------------------- 665 (1025)
T ss_pred HHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCc--------------------------
Confidence 99999999999999999 68999999999999999999999999999999998
Q ss_pred ccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCC
Q 002707 426 EVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPL 505 (890)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (890)
T Consensus 666 -------------------------------------------------------------------------------- 665 (1025)
T PRK12900 666 -------------------------------------------------------------------------------- 665 (1025)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHHHhhhhhhcccccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCc
Q 002707 506 GPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDT 585 (890)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~ 585 (890)
++|.++||||||||+||||+|||+||+||||||||||+|+||+|+||+|||.|| +
T Consensus 666 -----------------------~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~--~ 720 (1025)
T PRK12900 666 -----------------------EGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFG--S 720 (1025)
T ss_pred -----------------------cchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhC--c
Confidence 368899999999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q 002707 586 SWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQ 665 (890)
Q Consensus 586 ~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~ 665 (890)
+++.++|++++.++++||+++|++++|++||++||++||++||+|++||+|||.||++||++|+.+|.+ +++...|.+
T Consensus 721 ~~i~~~~~~~~~~e~e~I~~~~i~k~ie~AQk~vE~~nf~iRk~lleyDdv~n~QR~vIY~~R~~~L~~--~~~~~~i~~ 798 (1025)
T PRK12900 721 DRVISVMDRLGHEEGDVIEHSMITKSIERAQKKVEEQNFAIRKRLLEYDDVLNQQREVIYTRRRNGLIK--ERLTSDIFD 798 (1025)
T ss_pred HHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999965 479999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCc
Q 002707 666 YMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPN 745 (890)
Q Consensus 666 ~~~~~i~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (890)
|++++++.+++.+. .+|++++|...+...+.... .+++ .
T Consensus 799 ~~~~~~~~~v~~~~------~~~~~~~l~~~~~~~~~~~~-----~~~~------------------------------~ 837 (1025)
T PRK12900 799 LLRDYCDTVVKKYH------KALDVDGLEEQVLRELSVEF-----KPER------------------------------D 837 (1025)
T ss_pred HHHHHHHHHHHHHh------hhccHHHHHHHHHHHhCccC-----CCCH------------------------------H
Confidence 99999999998764 26999998776543321100 0000 0
Q ss_pred cccccccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhHHHHH
Q 002707 746 LFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRD 825 (890)
Q Consensus 746 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~y~~k~~~~~~~~~~~~~~ER~ilL~aID~~W~e 825 (890)
. +...+.+++.++|.+.+...|..|.. .++++.+++|||.++|++||.+|++
T Consensus 838 ~--------------------------~~~~~~~~~~~~l~~~~~~~y~~k~~--~~~~~~~~~~er~i~L~~iD~~W~e 889 (1025)
T PRK12900 838 T--------------------------FEREGVEGTADKLYNTALAFYRRKEE--AVPEDIMRQIEKYAVLSVIDQKWRE 889 (1025)
T ss_pred H--------------------------HhcCCHHHHHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01124567889999999999976643 4677899999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 002707 826 HLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQY 877 (890)
Q Consensus 826 HLd~Md~LRegI~LRsYgQKDPL~EYkkEAf~lF~~M~~~I~~~iv~~L~~~ 877 (890)
||++||+||+||+||+||||||+.|||+|||++|+.|+.+|+.+++++||+.
T Consensus 890 HL~~md~Lr~~I~lr~y~QkdPl~eYk~Ea~~lF~~m~~~i~~~~v~~l~~~ 941 (1025)
T PRK12900 890 HLREIDSLREGINLRAYGQKDPLLEYKQEAYRLFVDLLREIELETLSLAFKL 941 (1025)
T ss_pred HHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999984
No 11
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.3e-201 Score=1750.40 Aligned_cols=682 Identities=46% Similarity=0.742 Sum_probs=647.3
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
|||||||++||++||.|+||||+| |||+|||||+||++||+|+|+|||||||++.++
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~ 158 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAG 158 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCC
Confidence 799999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcchH
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~ 137 (890)
|++++|++||+||||||||||||||||||||+.+.+++||| +++||||||||||||||||||||||||......+|.
T Consensus 159 m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr---~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~ 235 (822)
T COG0653 159 MSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQR---GLNFAIVDEVDSILIDEARTPLIISGPAEDSSELYK 235 (822)
T ss_pred CChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhc---cCCeEEEcchhheeeeccccceeeecccccCchHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999998888889999
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcCCCCCCCCC-cHHHHHHHHHHHHHhcccCcceEEeCCeEEE
Q 002707 138 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 216 (890)
Q Consensus 138 ~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~dg~I~i 216 (890)
.++.+++.|....||++|++.|+|+||++|+.++|++|++.+||+.++ .+.|++++||+||.+|++|+||||+||+|+|
T Consensus 236 ~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~I 315 (822)
T COG0653 236 KVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVVI 315 (822)
T ss_pred HHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEE
Confidence 999999999988899999999999999999999999999999999877 6899999999999999999999999999999
Q ss_pred EeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhhCCCeEEcCCC
Q 002707 217 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 296 (890)
Q Consensus 217 VD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 296 (890)
||+||||+|+||+||+|||||||||||++|++||+|+|+||||||||+|+|++||||||.||+.||.++||++|++||||
T Consensus 316 vD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTn 395 (822)
T COG0653 316 VDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTN 395 (822)
T ss_pred EecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHh
Q 002707 297 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 376 (890)
Q Consensus 297 kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~ 376 (890)
+|++|+|+||.+|.|.++||.||+++|.++|.+||||||||.||+.||.+|++|.+.||||+|||| |||++||+|||+
T Consensus 396 rp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNA--k~h~~EA~Iia~ 473 (822)
T COG0653 396 RPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNA--KNHAREAEIIAQ 473 (822)
T ss_pred CcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeecc--ccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 799999999999
Q ss_pred cCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002707 377 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 456 (890)
Q Consensus 377 AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (890)
||++|+||||||||||||||+||||++
T Consensus 474 AG~~gaVTiATNMAGRGTDIkLg~~~~----------------------------------------------------- 500 (822)
T COG0653 474 AGQPGAVTIATNMAGRGTDIKLGGNPE----------------------------------------------------- 500 (822)
T ss_pred cCCCCccccccccccCCcccccCCCHH-----------------------------------------------------
Confidence 999999999999999999999998652
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHhhhhhhcccccccchhhhhcCc
Q 002707 457 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 536 (890)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 536 (890)
.|.++||
T Consensus 501 -------------------------------------------------------------------------~V~~lGG 507 (822)
T COG0653 501 -------------------------------------------------------------------------FVMELGG 507 (822)
T ss_pred -------------------------------------------------------------------------HHHHhCC
Confidence 5889999
Q ss_pred eEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHHHHHhcCCCCCCCccchhHHHHHHHHH
Q 002707 537 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 616 (890)
Q Consensus 537 L~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 616 (890)
|||||||||||||||||||||||||||||+|+||+||||+||++|| ++++..+|.++++.+|+||++++++++|++||
T Consensus 508 L~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~L~r~F~--~d~~~~~~~~l~~~~~e~i~~~~~~~~ie~aQ 585 (822)
T COG0653 508 LHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDDLMRRFA--SDRLPALMDKLGLKEGEAIESKMVTRAVERAQ 585 (822)
T ss_pred cEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHHHHHHHhc--chhhHHHHHhhcCCccCccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHH
Q 002707 617 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 696 (890)
Q Consensus 617 ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~~~~~~l~~~ 696 (890)
++||++||++||++++||+||+.||++||++|+++|++ .++++.+..|++++++.+|..+.+.....+.|+++.|..+
T Consensus 586 k~vE~~n~d~rk~ll~yddv~~~QR~~IY~~R~~~l~~--~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~l~~~ 663 (822)
T COG0653 586 RKVEGRNFDIRKQLLEYDDVLNDQRKVIYAQRNRLLEA--LDLSEFISKMIEDVIKALVGEYIPPPQQAELWDLEGLIDE 663 (822)
T ss_pred HHHHhcCCcHHhhHHHHhHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999965 5899999999999999999999888777789999999887
Q ss_pred HHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccc
Q 002707 697 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 776 (890)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 776 (890)
+...+..-.. +..|.. ...
T Consensus 664 l~~~~~~~~~--------------------------------------------------~~~~~~-----------~~~ 682 (822)
T COG0653 664 LKGTVHPDLP--------------------------------------------------INKSDL-----------EDE 682 (822)
T ss_pred HhhhcCccch--------------------------------------------------hHHHhh-----------hcc
Confidence 6543211000 000000 011
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHHHHH
Q 002707 777 TTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGC 856 (890)
Q Consensus 777 ~~~~~~~~l~~~i~~~y~~k~~~~~~~~~~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EYkkEAf 856 (890)
..+++++.+.+.+.+.|..+++ .+++.|+.|+|.+||++||..|++||+.|++||++||||+|||+||++|||+|||
T Consensus 683 ~~~~l~e~i~~~~~~~~~~k~~---~~~~~~~~~~r~v~l~~iD~~W~ehl~~md~Lr~~I~lR~y~qk~Pl~eyk~e~~ 759 (822)
T COG0653 683 AEEELAERILKAADEAYDKKEE---VGPEAMREFERYVMLQVLDYLWREHLDAMDALREGIHLRGYAQKDPLIEYKREAF 759 (822)
T ss_pred cHHHHHHHHHHHHHHHHHhhhc---cCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHhccCChHHHHHHHHH
Confidence 3578888999999999976543 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcccCc
Q 002707 857 RFFISMLSATRRLTVESLVQYWSSP 881 (890)
Q Consensus 857 ~lF~~M~~~I~~~iv~~L~~~~~~~ 881 (890)
++|+.|+.+|+.++++.+|++++..
T Consensus 760 ~~Fe~m~~~i~~~~~~~l~~~~~~~ 784 (822)
T COG0653 760 ELFEDMLEDIKEDVVKRLFKVQVAE 784 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999976655
No 12
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.2e-197 Score=1723.84 Aligned_cols=677 Identities=44% Similarity=0.716 Sum_probs=638.2
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
||||||||+||++||+|+||||+| |||+|+|||+||++||+|+|++|||+||+++++
T Consensus 79 ~~~~dvQlig~l~l~~G~iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~ 158 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNS 158 (796)
T ss_pred CCCchhHHHHHHHHhcCCcccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCC
Confidence 799999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcchH
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~ 137 (890)
+++++|+++|.||||||||+|||||||||||+.+++++|+| +++||||||||||||||||||||||||.+.+.+.|.
T Consensus 159 ~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r---~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~ 235 (796)
T PRK12906 159 MSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQR---PLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYI 235 (796)
T ss_pred CCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhcc---CcceeeeccchheeeccCCCceecCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999999889999
Q ss_pred HHHHHHHHhccCC-----------CeEEeCCCCeeeccHhhHHHHHHHhcCCCCCCCCC-cHHHHHHHHHHHHHhcccCc
Q 002707 138 VAAKVAELLVQGL-----------HYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDV 205 (890)
Q Consensus 138 ~~~~~v~~l~~~~-----------~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d~ 205 (890)
.++++++.|.++. ||.+|++.++++||++|+.++|+++++.++|++.+ .|.|||.+||+|+++|++|+
T Consensus 236 ~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~ 315 (796)
T PRK12906 236 RADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDI 315 (796)
T ss_pred HHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999998764 99999999999999999999999999999999766 68999999999999999999
Q ss_pred ceEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhh
Q 002707 206 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 285 (890)
Q Consensus 206 dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~i 285 (890)
||||+||+|+|||++|||+|+||+||+||||||||||||+|++||+|+|+||||||||+|++|+||||||++++.||+++
T Consensus 316 dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~i 395 (796)
T PRK12906 316 DYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREI 395 (796)
T ss_pred cEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCc
Q 002707 286 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 365 (890)
Q Consensus 286 Y~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k 365 (890)
||++|++||||+|++|+|+||.||.|..+||.||++++.+.|.+||||||||.|++.||.||..|++.||+|++||| +
T Consensus 396 Y~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna--~ 473 (796)
T PRK12906 396 YNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNA--K 473 (796)
T ss_pred hCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred chhhHHHHHHhcCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcch
Q 002707 366 YAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSS 445 (890)
Q Consensus 366 ~~~~EA~IIa~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (890)
++++||+||++||++|+||||||||||||||+||
T Consensus 474 ~~~~Ea~ii~~ag~~g~VtIATnmAGRGtDI~l~---------------------------------------------- 507 (796)
T PRK12906 474 NHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLG---------------------------------------------- 507 (796)
T ss_pred cHHHHHHHHHhcCCCceEEEEeccccCCCCCCCC----------------------------------------------
Confidence 8899999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHhhhhhhccccc
Q 002707 446 SLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCS 525 (890)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (890)
T Consensus 508 -------------------------------------------------------------------------------- 507 (796)
T PRK12906 508 -------------------------------------------------------------------------------- 507 (796)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHHHHHhcCC-CCCCCcc
Q 002707 526 NEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITN-DEDMPIE 604 (890)
Q Consensus 526 ~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~-~~~~~i~ 604 (890)
++|.++||||||||+||||+|||+||+||||||||||+|+||+||||+||+.|| ++++.++|.++++ ++++||+
T Consensus 508 ---~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~~~f~--~~~~~~~~~~~~~~~~~~~i~ 582 (796)
T PRK12906 508 ---PGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFG--SDRVKAFLDRLGMNDDDQVIE 582 (796)
T ss_pred ---cchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHHHhhC--cHHHHHHHHHcCCCCCCCccc
Confidence 368899999999999999999999999999999999999999999999999999 9999999999999 8899999
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002707 605 GDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKH 684 (890)
Q Consensus 605 ~~~~~~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~ 684 (890)
+++++++|++||+++|++||++||+|++||+|+|.||++||++|++||.++ +++.+.|.+|++++|+++++.+.++.
T Consensus 583 ~~~~~~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~il~~~-~~l~~~i~~~~~~~i~~~i~~~~~~~-- 659 (796)
T PRK12906 583 SRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINED-KDLKEVLMPMIKRTVDRQVQMYTQGD-- 659 (796)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence 999999999999999999999999999999999999999999999999652 47999999999999999999886544
Q ss_pred CCccCHHHHHHHHHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhc
Q 002707 685 PRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAIC 764 (890)
Q Consensus 685 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 764 (890)
+++|++++|...+...++.. . .+++ ..
T Consensus 660 ~~~w~~~~L~~~l~~~~~~~-~----~~~~------------------------------~~------------------ 686 (796)
T PRK12906 660 KKDWDLDALRDFIVSAMPDE-E----TFDF------------------------------ED------------------ 686 (796)
T ss_pred hhhccHHHHHHHHHHHcCcc-c----CCCH------------------------------HH------------------
Confidence 67899999887765332100 0 0000 00
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccccc
Q 002707 765 SDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYD-DVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFG 843 (890)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~y~~k~~~~~~~-~~~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~LRsYg 843 (890)
....+.++++++|.+.+.+.|..|++ .++ ++.++++||.+||++||++|++||++|++||+|||||+||
T Consensus 687 --------~~~~~~eel~~~L~~~~~~~Y~~K~~--~lg~~e~~~~~eR~i~L~~ID~~W~eHL~~md~LRegI~LR~yg 756 (796)
T PRK12906 687 --------LKGKSPEELKKRLLDIVEDNYAEKEK--QLGDPTQMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYG 756 (796)
T ss_pred --------HccCCHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 01124578899999999999987643 456 7899999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q 002707 844 HRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWS 879 (890)
Q Consensus 844 QKDPL~EYkkEAf~lF~~M~~~I~~~iv~~L~~~~~ 879 (890)
||||+.|||+|||++|+.|+.+|+.+++++||+++.
T Consensus 757 QkDPl~EYk~Ea~~lF~~m~~~i~~~iv~~~~~~~~ 792 (796)
T PRK12906 757 QLNPLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQI 792 (796)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999998874
No 13
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.7e-189 Score=1659.81 Aligned_cols=680 Identities=38% Similarity=0.579 Sum_probs=625.0
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
|+|||||++|++++|.|.||||+| |||+|+|||.||++||+++|++|||+||++..+
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG 172 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSG 172 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 789999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhh-cccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcch
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDN-LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY 136 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~-~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y 136 (890)
++.++++++|.|||+|||+++||||||||+ |..+..++||| +++||||||||||||||||||||||||.+..++.|
T Consensus 173 ~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr---~~~~~IIDEADsmLiDEArTPLIISg~~~~~~~~Y 249 (970)
T PRK12899 173 SPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGR---GFYFAIIDEVDSILIDEARTPLIISGPGEKHNPVY 249 (970)
T ss_pred CCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcc---cccEEEEechhhhhhhccCCceeeeCCCccccHHH
Confidence 999999999999999999999999999999 88888889999 99999999999999999999999999999999988
Q ss_pred HHHHHHHHHh-------------------------------------------------------------cc-------
Q 002707 137 PVAAKVAELL-------------------------------------------------------------VQ------- 148 (890)
Q Consensus 137 ~~~~~~v~~l-------------------------------------------------------------~~------- 148 (890)
..++.+|..| .+
T Consensus 250 ~~~~~~V~~l~~~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 329 (970)
T PRK12899 250 FELKDKVAELVYLQRELCNRIALEARKVLDPFLDTDILPKDKKVMEGISEACRSLWLVSKGMPLNRVLRRVREHPDLRAM 329 (970)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhhhhhhhhhhhccccchhhhhhhhcccchhhh
Confidence 8877555554 11
Q ss_pred ----------------------CCCeEEeCCCCeeeccHhhHHHH--------HHHh---------cCC--CCCCC----
Q 002707 149 ----------------------GLHYTVELKNNSVELTEEGIALA--------EMAL---------ETN--DLWDE---- 183 (890)
Q Consensus 149 ----------------------~~~y~vd~~~k~v~Lte~G~~~~--------e~~~---------~~~--~l~~~---- 183 (890)
+.||.+|++.++|+||++|+.++ |.+| +++ +++.+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~y~vde~~~~v~LTe~G~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~l~~~~~~ 409 (970)
T PRK12899 330 IDKWDVYYHAEQNKEESLEKLSELYIIVDEHNNDFELTDKGMQQWVEKAGGSAEDFVMMDMGHEYALIEEDETLSPADKI 409 (970)
T ss_pred hhhhhhhhhhhhhhhhccccccCCceEEecCCCeeeechhhHHHHhhhccCCHHHHhccchhhhhhccccccccCHHHhh
Confidence 23899999999999999999885 7777 663 43432
Q ss_pred ------------CCcHHHHHHHHHHHHHhcccCcceEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCe
Q 002707 184 ------------NDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV 251 (890)
Q Consensus 184 ------------~~~~~~~i~~Al~A~~l~~~d~dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~ 251 (890)
+..+.|+|.+||+|+++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++
T Consensus 410 ~~k~~~~~~~~~~~~~~~~i~~aL~A~~lf~rd~dYiV~dg~V~IVDe~TGR~~~gr~~s~GLhQaiEaKE~v~i~~e~~ 489 (970)
T PRK12899 410 NRKIAISEEDTQRKARAHGLRQLLRAHLLMEKDVDYIVRDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQ 489 (970)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCCcchHHHHHHHhhcCCCCCCCce
Confidence 23689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeechhHHhhcCccccccCCchhHHHHHHhhhCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCC
Q 002707 252 VVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGR 331 (890)
Q Consensus 252 t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~gr 331 (890)
|+|+||||||||+|++|+||||||++++.||+++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||
T Consensus 490 t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~gr 569 (970)
T PRK12899 490 TFATVTLQNFFRLYEKLAGMTGTAITESREFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGN 569 (970)
T ss_pred eeeeehHHHHHhhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHhcCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHH
Q 002707 332 PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIE 411 (890)
Q Consensus 332 PVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~ 411 (890)
||||||.||+.||.||.+|.++||+|+|||| +++++||+||++||++|+||||||||||||||+||
T Consensus 570 PvLigt~si~~se~ls~~L~~~gi~h~vLNa--k~~~~Ea~iia~AG~~g~VTIATNmAGRGTDIkl~------------ 635 (970)
T PRK12899 570 PILIGTESVEVSEKLSRILRQNRIEHTVLNA--KNHAQEAEIIAGAGKLGAVTVATNMAGRGTDIKLD------------ 635 (970)
T ss_pred CEEEEeCcHHHHHHHHHHHHHcCCcceeccc--chhhhHHHHHHhcCCCCcEEEeeccccCCcccccC------------
Confidence 9999999999999999999999999999999 68999999999999999999999999999999998
Q ss_pred HHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHH
Q 002707 412 DRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKE 491 (890)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (890)
T Consensus 636 -------------------------------------------------------------------------------- 635 (970)
T PRK12899 636 -------------------------------------------------------------------------------- 635 (970)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhccCCCCChhhHHHHHhhhhhhcccccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceEEEE
Q 002707 492 LQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 571 (890)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~l 571 (890)
++|+++|||||||||||||+|||||||||||||||||||+|||
T Consensus 636 -------------------------------------~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l 678 (970)
T PRK12899 636 -------------------------------------EEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL 678 (970)
T ss_pred -------------------------------------chHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE
Confidence 3789999999999999999999999999999999999999999
Q ss_pred ecCchhhhhccCCchHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002707 572 SLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSI 651 (890)
Q Consensus 572 SLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~i 651 (890)
||||+||++|| ++++.++|+++++++++||++++++++|++||++||++||++||++++||+|||.||++||++|++|
T Consensus 679 SlEDdL~~~f~--~~~i~~~~~~~~~~~~~~I~~~~~~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~vIY~~R~~i 756 (970)
T PRK12899 679 SFEDRLMRLFA--SPKLNTLIRHFRPPEGEAMSDPMFNRLIETAQKRVEGRNYTIRKHTLEYDDVMNKQRQTIYAFRNDV 756 (970)
T ss_pred EcchHHHHHhC--cHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHHHhchhhhhhhccCCccchhhhhhccccccccc
Q 002707 652 LTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSID 731 (890)
Q Consensus 652 L~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (890)
|.+ +++.+.|.+|++++|+++++.+..+. .+++|++++|...+...++. .++++
T Consensus 757 L~~--~~~~~~i~~~~~~~i~~~v~~~~~~~-~~~~~~~~~L~~~l~~~~~~-------~~~~~---------------- 810 (970)
T PRK12899 757 LHA--EDIFVVAKEIIEHVALMLASLILKDR-HADGCSLPKLEEWLSYSFPV-------KLDDQ---------------- 810 (970)
T ss_pred HcC--CcHHHHHHHHHHHHHHHHHHHhcCcc-chhhccHHHHHHHHHHhcCC-------CCCHH----------------
Confidence 964 47999999999999999999887654 36779999988765432110 00000
Q ss_pred ccCCCCCCCCCCCccccccccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhhc----------
Q 002707 732 INNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESR---------- 801 (890)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~y~~k~~~~~---------- 801 (890)
.+ . ...+.++++++|.+.+...|..|.....
T Consensus 811 --------------~~---------------------~----~~~~~e~l~~~l~~~~~~~y~~k~~~l~~~~~~~~~~~ 851 (970)
T PRK12899 811 --------------EL---------------------R----RLGDTDAIAEKIADLLIEAFQVKFSSMVAEFTEAIGEA 851 (970)
T ss_pred --------------HH---------------------h----ccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcc
Confidence 00 0 0013467889999999999977654320
Q ss_pred -CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccC
Q 002707 802 -YDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSS 880 (890)
Q Consensus 802 -~~~~~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EYkkEAf~lF~~M~~~I~~~iv~~L~~~~~~ 880 (890)
.+++.++++||.++|++||.+|++||++|++||+|||||+||||||+.|||+|||++|+.|+.+|+.++++++|+++.+
T Consensus 852 ~~~~e~~~~~er~i~L~~ID~~W~eHL~~md~LRe~I~lR~ygQkdPl~EYk~Ea~~~F~~m~~~i~~~iv~~l~~~~i~ 931 (970)
T PRK12899 852 VDAQGICNDILRSVMIMHIDEQWKIHLVDMDLLRSEVGLRTVGQKDPLIEFKHESFLLFESLIRDIRIAIVKHLFRLELT 931 (970)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1256899999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred c
Q 002707 881 P 881 (890)
Q Consensus 881 ~ 881 (890)
.
T Consensus 932 ~ 932 (970)
T PRK12899 932 L 932 (970)
T ss_pred c
Confidence 3
No 14
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5.7e-185 Score=1610.51 Aligned_cols=664 Identities=52% Similarity=0.820 Sum_probs=624.9
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
|||||||++||++||+|+||||+| |||+|+|||+||++||+|||++|||+||+++++
T Consensus 55 ~~p~~vQlig~~~l~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~ 134 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSG 134 (745)
T ss_pred CCccchHHhhhhhhcCCceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 799999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcchH
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~ 137 (890)
+++++|+.+|.|||+|||+++||||||||+|+.+.++.++| +++|||||||||||||+|||||||||+.+.+..+|.
T Consensus 135 ~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r---~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~ 211 (745)
T TIGR00963 135 MSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQR---PFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYL 211 (745)
T ss_pred CCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhcc---ccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHH
Confidence 99999999999999999999999999999999888888999 999999999999999999999999999988888999
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcCCCCCCCCC-cHHHHHHHHHHHHHhcccCcceEEeCCeEEE
Q 002707 138 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 216 (890)
Q Consensus 138 ~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~dg~I~i 216 (890)
.++.+++.|.++.||.+|++.++|+||++|+.++|++++++++|+.++ .|.|||.+||+|+++|++|+||||+||+|+|
T Consensus 212 ~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~i 291 (745)
T TIGR00963 212 QANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVI 291 (745)
T ss_pred HHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 999999999988999999999999999999999999999999999844 8999999999999999999999999999999
Q ss_pred EeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhhCCCeEEcCCC
Q 002707 217 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 296 (890)
Q Consensus 217 VD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 296 (890)
||++|||+|+||+||+||||||||||||+|++||+|+|+||||||||+|++|+||||||++++.||+++||++|++||||
T Consensus 292 vD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtn 371 (745)
T TIGR00963 292 VDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTN 371 (745)
T ss_pred EECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHh
Q 002707 297 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 376 (890)
Q Consensus 297 kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~ 376 (890)
+|++|+|+||.||.|+.+||.||+++|.++|++||||||||.|++.||.||+.|++.|++|++||| +++++|++|++.
T Consensus 372 kp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna--~q~~rEa~ii~~ 449 (745)
T TIGR00963 372 RPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNA--KNHEREAEIIAQ 449 (745)
T ss_pred CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeC--ChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 589999999999
Q ss_pred cCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002707 377 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 456 (890)
Q Consensus 377 AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (890)
||++|+||||||||||||||+++
T Consensus 450 ag~~g~VtIATnmAgRGtDI~l~--------------------------------------------------------- 472 (745)
T TIGR00963 450 AGRKGAVTIATNMAGRGTDIKLE--------------------------------------------------------- 472 (745)
T ss_pred cCCCceEEEEeccccCCcCCCcc---------------------------------------------------------
Confidence 99999999999999999999974
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHhhhhhhcccccccchhhhhcCc
Q 002707 457 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 536 (890)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 536 (890)
+|.++||
T Consensus 473 -------------------------------------------------------------------------~V~~~GG 479 (745)
T TIGR00963 473 -------------------------------------------------------------------------EVKELGG 479 (745)
T ss_pred -------------------------------------------------------------------------chhhcCC
Confidence 5889999
Q ss_pred eEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHHHHHhcCCCCCCCccchhHHHHHHHHH
Q 002707 537 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 616 (890)
Q Consensus 537 L~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 616 (890)
||||||+||||+|||+|++||||||||||+|+||+|+||+||++|| ++++.++|+++++++++||+++++++++++||
T Consensus 480 l~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aQ 557 (745)
T TIGR00963 480 LYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFG--GDRLEGLMRRLGLEDDEPIESKMVTRALESAQ 557 (745)
T ss_pred cEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHHHhhh--hHHHHHHHHHcCCCCCceeecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHH
Q 002707 617 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 696 (890)
Q Consensus 617 ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~~~~~~l~~~ 696 (890)
+++|++||++||++++||+|||.||++||++|++||++ +++.+.+.+|++++|+++++.+.++...+++|++++|...
T Consensus 558 ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iY~~R~~il~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (745)
T TIGR00963 558 KRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILES--EDLSELILQMLESTLDEIVDAYINEQKPSEEWDLEGLIEK 635 (745)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHH
Confidence 99999999999999999999999999999999999954 4799999999999999999998766666788999999877
Q ss_pred HHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccc
Q 002707 697 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 776 (890)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 776 (890)
+...++.. ..+++ ..+ ...
T Consensus 636 ~~~~~~~~-----~~~~~------------------------------~~~--------------------------~~~ 654 (745)
T TIGR00963 636 LKTLFLLD-----GDLTP------------------------------EDL--------------------------ENL 654 (745)
T ss_pred HHHHhCcc-----CCCCH------------------------------HHH--------------------------cCC
Confidence 65432100 00000 000 011
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCCHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHH
Q 002707 777 TTNLLRKYLGDILIASYLNVVQESRYDDV---YMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKI 853 (890)
Q Consensus 777 ~~~~~~~~l~~~i~~~y~~k~~~~~~~~~---~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EYkk 853 (890)
+.+++++++.+.+.+.|..|+. .++++ .++++||.++|++||.+|++||++|++||+||+||+||||||+.|||+
T Consensus 655 ~~~~~~~~l~~~~~~~~~~k~~--~~~~~~~~~~~~~er~~~L~~iD~~W~~hl~~m~~Lr~~i~lr~y~q~dp~~ey~~ 732 (745)
T TIGR00963 655 TSEDLKELLLEKIRAAYDEKEA--ELESERPGLMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKN 732 (745)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccCChHHHHHH
Confidence 3467889999999999977644 34544 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002707 854 DGCRFFISMLSAT 866 (890)
Q Consensus 854 EAf~lF~~M~~~I 866 (890)
|||+||+.|+.+|
T Consensus 733 e~~~~F~~m~~~i 745 (745)
T TIGR00963 733 EGFNLFLEMLEDI 745 (745)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999865
No 15
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.3e-179 Score=1579.11 Aligned_cols=682 Identities=39% Similarity=0.634 Sum_probs=645.0
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
|||||||++|+++||+|+||||+| |||+|+|||+||++||+|+|++|||+||++.++
T Consensus 77 ~~p~~vQl~~~~~l~~G~Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~ 156 (790)
T PRK09200 77 MRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSD 156 (790)
T ss_pred CCCchHHHHhHHHHcCCceeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 799999999999999999999999 999999999999999999999999999999999
Q ss_pred CC-HHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcch
Q 002707 58 MI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY 136 (890)
Q Consensus 58 ~~-~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y 136 (890)
++ +++|+.+|.|||+|||+++||||||||+|+.++...++| +++|||||||||||||||||||||||+++.++++|
T Consensus 157 ~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r---~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y 233 (790)
T PRK09200 157 IDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQR---PLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLY 233 (790)
T ss_pred CCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhccc---ccceEEEeccccceeccCCCceeeeCCCccccHHH
Confidence 99 999999999999999999999999999999888888998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcCCCCCCCCC-cHHHHHHHHHHHHHhcccCcceEEeCCeEE
Q 002707 137 PVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKAL 215 (890)
Q Consensus 137 ~~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~dg~I~ 215 (890)
..++.++.+|.++.||.+|++.++++||++|+.++|.++++.++|+..+ .+.+||.+||+|+++|++|+||||+||+|+
T Consensus 234 ~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ 313 (790)
T PRK09200 234 HIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIV 313 (790)
T ss_pred HHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEE
Confidence 9999999999988899999999999999999999999999999998765 788999999999999999999999999999
Q ss_pred EEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhhCCCeEEcCC
Q 002707 216 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 295 (890)
Q Consensus 216 iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt 295 (890)
|||++|||+|+||+||+||||||||||||+|+++|+|+|+|||||||++|++|+||||||+++++||+++||++|++|||
T Consensus 314 ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt 393 (790)
T PRK09200 314 LVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPT 393 (790)
T ss_pred EEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH
Q 002707 296 NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA 375 (890)
Q Consensus 296 ~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa 375 (890)
|+|++|+|+||.||.+..+||.|+++++.+.|.+||||||||.|++.|+.|+..|.+.|++|++||+ +++.+|+++++
T Consensus 394 ~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~--~~~~~e~~~i~ 471 (790)
T PRK09200 394 NRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA--KNAAKEAQIIA 471 (790)
T ss_pred CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC--CccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 57889999999
Q ss_pred hcCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHH
Q 002707 376 QAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAAL 455 (890)
Q Consensus 376 ~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (890)
+||++|+||||||||||||||+||
T Consensus 472 ~ag~~g~VlIATdmAgRG~DI~l~-------------------------------------------------------- 495 (790)
T PRK09200 472 EAGQKGAVTVATNMAGRGTDIKLG-------------------------------------------------------- 495 (790)
T ss_pred HcCCCCeEEEEccchhcCcCCCcc--------------------------------------------------------
Confidence 999999999999999999999998
Q ss_pred HHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHhhhhhhcccccccchhhhhcC
Q 002707 456 LAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLG 535 (890)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 535 (890)
++|.++|
T Consensus 496 -------------------------------------------------------------------------~~V~~~G 502 (790)
T PRK09200 496 -------------------------------------------------------------------------EGVHELG 502 (790)
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 4788999
Q ss_pred ceEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHHHHHhcCCCC---CCCccchhHHHHH
Q 002707 536 GLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDE---DMPIEGDAIVRQL 612 (890)
Q Consensus 536 GL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~i 612 (890)
|||||+|++|+|+|+++|++|||||||+||+|+||+|+||+||++|| ++++.++++++++++ ++||+++++++++
T Consensus 503 GL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (790)
T PRK09200 503 GLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFA--PEELEKLKKKLKTDAQRLTGLLFNRKVHKIV 580 (790)
T ss_pred CcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHHHhhc--cHHHHHHHHHcCCccccCCcccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999888 8999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCHHH
Q 002707 613 LGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDK 692 (890)
Q Consensus 613 ~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~~~~~~ 692 (890)
++||+++|++||++||++++||+||+.||++||++|++||.++..++.+.+..|++++++.+++.+..+...+++|++++
T Consensus 581 ~~aQ~~~e~~~~~~R~~~~~~d~~~~~QR~~iy~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (790)
T PRK09200 581 VKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEEDDRDLIDIVILMIDVYLEAVAEEYLLEKSLLEEWIYEN 660 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHhcCCccChhhhcHHH
Confidence 99999999999999999999999999999999999999997765589999999999999999998876655567899999
Q ss_pred HHHHHHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccc
Q 002707 693 LLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNG 772 (890)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 772 (890)
+...+...+... +
T Consensus 661 ~~~~~~~~~~~~----------------------------------~--------------------------------- 673 (790)
T PRK09200 661 LSFQLNEILSNT----------------------------------N--------------------------------- 673 (790)
T ss_pred HHHHHHHHhccc----------------------------------c---------------------------------
Confidence 877654321100 0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhcCCHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHH
Q 002707 773 RYRATTNLLRKYLGDILIASYLNVVQESRYDDV-YMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEY 851 (890)
Q Consensus 773 ~~~~~~~~~~~~l~~~i~~~y~~k~~~~~~~~~-~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EY 851 (890)
. .+.++++++|.+.+...|..|++ .++++ .+++|||.++|++||.+|++||++|++||+|||||+||||||+.||
T Consensus 674 ~--~~~~~~~~~l~~~~~~~y~~k~~--~lg~e~~~~e~eR~i~L~~ID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EY 749 (790)
T PRK09200 674 F--PDKKEVVQFLLEEAEKQLKEKRN--KLPSATLYNQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQRNPIREY 749 (790)
T ss_pred c--CCHHHHHHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHH
Confidence 0 02356788899999999976543 34444 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccCccccccccc
Q 002707 852 KIDGCRFFISMLSATRRLTVESLVQYWSSPMESQELFL 889 (890)
Q Consensus 852 kkEAf~lF~~M~~~I~~~iv~~L~~~~~~~~~~~~~~~ 889 (890)
|+|||+||+.|+.+|+.+++++||+...+..+.+|++.
T Consensus 750 kkEa~~lFe~M~~~I~~~~v~~l~~~~~~~~~~~e~~~ 787 (790)
T PRK09200 750 QKEALESFEYMYENIKKDMVRNLLLSLLVFDKEGEIVI 787 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcEeccCCCCceee
Confidence 99999999999999999999999999999999988864
No 16
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=7.4e-177 Score=1549.60 Aligned_cols=659 Identities=38% Similarity=0.593 Sum_probs=609.9
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
|||||||++|+++||+|.||||+| |||+|+|||+||++||+|||++||++||++..+
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~ 148 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVD 148 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECC
Confidence 799999999999999999999999 999999999999999999999999999997653
Q ss_pred -----CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCC
Q 002707 58 -----MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD 132 (890)
Q Consensus 58 -----~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~ 132 (890)
+++++|+.+|.|||+|||+++||||||||+|+.+..++++| +++|+|||||||||||||||||||||++..+
T Consensus 149 s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r---~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 149 DPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLR---PFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred CCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccc---cCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 78889999999999999999999999999999988888998 9999999999999999999999999999988
Q ss_pred CcchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcCCCCCCCCC-cHHHHHHHHHHHHHhcccCcceEEeC
Q 002707 133 VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRN 211 (890)
Q Consensus 133 ~~~y~~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~d 211 (890)
+.+|..++.+++.|.++.||++|+++++|+||++|+.++|++|++++||++.+ .+.|||.+||+|+++|++|+||||+|
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 89999999999999999999999999999999999999999999999998765 79999999999999999999999999
Q ss_pred CeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhhCCCeE
Q 002707 212 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 291 (890)
Q Consensus 212 g~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv 291 (890)
|+|+|||++|||+|+||+||+||||||||||||+|++|++|+|+||||||||+|+||+||||||++++.||+++|||+|+
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~ 385 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVV 385 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHH
Q 002707 292 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 371 (890)
Q Consensus 292 ~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA 371 (890)
+||||+|++|+|+||.||.+..+||.|+++++.++|.+||||||||.|++.|+.++..|.+.||+|++||| +++.+|+
T Consensus 386 ~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a--~~~~~E~ 463 (762)
T TIGR03714 386 KIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA--QNAAKEA 463 (762)
T ss_pred EcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC--CChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 5789999
Q ss_pred HHHHhcCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHH
Q 002707 372 ETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA 451 (890)
Q Consensus 372 ~IIa~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (890)
+++++||++|+||||||||||||||+||
T Consensus 464 ~ii~~ag~~g~VlIATdmAgRGtDI~l~---------------------------------------------------- 491 (762)
T TIGR03714 464 QIIAEAGQKGAVTVATSMAGRGTDIKLG---------------------------------------------------- 491 (762)
T ss_pred HHHHHcCCCCeEEEEccccccccCCCCC----------------------------------------------------
Confidence 9999999999999999999999999998
Q ss_pred HHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHhhhhhhcccccccchhh
Q 002707 452 KAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEV 531 (890)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 531 (890)
++|
T Consensus 492 -----------------------------------------------------------------------------~~v 494 (762)
T TIGR03714 492 -----------------------------------------------------------------------------KGV 494 (762)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 378
Q ss_pred hhcCceEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHHHHHhcCCCCC----CCccchh
Q 002707 532 KRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDED----MPIEGDA 607 (890)
Q Consensus 532 ~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~----~~i~~~~ 607 (890)
+++||||||+|++|+|+|+|+|++||||||||||+|+||+|+||+||++|| ++++.++|++++++++ +||++++
T Consensus 495 ~~~GGL~vIit~~~ps~rid~qr~GRtGRqG~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~ 572 (762)
T TIGR03714 495 AELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWS--PSWLKKYYKKYSVKDSKLKPSALFKRR 572 (762)
T ss_pred cccCCeEEEEecCCCCcHHHHHhhhcccCCCCceeEEEEEccchhhhhhcc--hHHHHHHHHHcCCCcccccCcccccHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999998765 8999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 002707 608 IVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANES-CSQQIFQYMQAVVDEIIFGNVDPLKHPR 686 (890)
Q Consensus 608 ~~~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~-~~~~i~~~~~~~i~~~v~~~~~~~~~~~ 686 (890)
++++|++||++||++||++||++++||+|||.||++||++|++||++ ++ +.+.+.+|++++++++++.+..+ +
T Consensus 573 ~~~~i~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iy~~R~~il~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 646 (762)
T TIGR03714 573 FRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEG--SDFLDDDVDQIIDDVFNMYAEEQDLS----N 646 (762)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHhccc----c
Confidence 99999999999999999999999999999999999999999999964 46 89999999999999999876321 1
Q ss_pred ccCHHHHHHHHHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccc
Q 002707 687 YWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSD 766 (890)
Q Consensus 687 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 766 (890)
. ++|...+...+. +..+ .|+ +
T Consensus 647 ~---~~l~~~~~~~~~---------~~~~-------------------------------------------~~~----~ 667 (762)
T TIGR03714 647 K---SLLKRFILENLS---------YQFK-------------------------------------------NDP----D 667 (762)
T ss_pred H---HHHHHHHHHHcC---------CChh-------------------------------------------hhh----h
Confidence 1 234333322110 0000 000 0
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCC
Q 002707 767 DLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDD-VYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHR 845 (890)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~l~~~i~~~y~~k~~~~~~~~-~~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQK 845 (890)
+. ...+.+++++++.+.+...|..|++ ..++ +.++++||.++|++||.+|++||++|++||+|||||+||||
T Consensus 668 ~~-----~~~~~~~~~~~~~~~~~~~~~~k~~--~~~~~~~~~~~~r~~~L~~iD~~W~~hl~~m~~lr~~i~lr~~~q~ 740 (762)
T TIGR03714 668 EF-----DLKNKEAIKDFLKEIADKELSEKKK--VLNNDYLFNDFERLSILKAIDENWIEQVDYLQQLKTVVTNRQNGQR 740 (762)
T ss_pred hh-----ccCCHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Confidence 00 0113567889999999999976643 3454 68999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHH
Q 002707 846 NPLEEYKIDGCRFFISMLSATR 867 (890)
Q Consensus 846 DPL~EYkkEAf~lF~~M~~~I~ 867 (890)
||+.|||+|||+||+.|+.+|+
T Consensus 741 dPl~ey~~e~~~~F~~m~~~i~ 762 (762)
T TIGR03714 741 NPIFEYHKEALESYEYMKKEIK 762 (762)
T ss_pred CHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999874
No 17
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.8e-143 Score=1253.97 Aligned_cols=501 Identities=47% Similarity=0.699 Sum_probs=484.4
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
|+|||||++|+++||+|+||||+| |||+|+|||.||++||++||++|||+||++..+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg 181 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVED 181 (656)
T ss_pred CCCChHHHHHHHHHhCCCeeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 799999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhccc-------------------CcchhcccCCCCcceEEeccCCeeeecC
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAA-------------------NSEQLVMRWPKPFHFAIVDEVDSVLIDE 118 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~-------------------~~~~~v~r~~R~~~~aIVDEvDSiLIDe 118 (890)
+++++|+.+|.||||||||+|||||||||||+. +.+++|+| +++||||||||||||||
T Consensus 182 ~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r---~~~~aIvDEvDSiLiDe 258 (656)
T PRK12898 182 QSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR---GLHFAIVDEADSVLIDE 258 (656)
T ss_pred CCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc---ccceeEeecccceeecc
Confidence 999999999999999999999999999999987 66788888 99999999999999999
Q ss_pred CCCcccccCCCCCC--CcchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcC-CCCCCCCCcHHHHHHHHH
Q 002707 119 GRNPLLISGEASKD--VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALET-NDLWDENDPWARFVMNAL 195 (890)
Q Consensus 119 ArtpLiISg~~~~~--~~~y~~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~-~~l~~~~~~~~~~i~~Al 195 (890)
|||||||||+.... .+.|..++.++++|+++.||++|+++++|+||+.|+.++|+++++ .++|+....+.+||++||
T Consensus 259 artpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al 338 (656)
T PRK12898 259 ARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQAL 338 (656)
T ss_pred CCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHH
Confidence 99999999988766 578999999999999999999999999999999999999999987 889998888999999999
Q ss_pred HHHHhcccCcceEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCc
Q 002707 196 KAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTA 275 (890)
Q Consensus 196 ~A~~l~~~d~dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa 275 (890)
+|+++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|++|++|+|+|||||||++|++|+||||||
T Consensus 339 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa 418 (656)
T PRK12898 339 SALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTA 418 (656)
T ss_pred HHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCC
Q 002707 276 KTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGI 355 (890)
Q Consensus 276 ~te~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi 355 (890)
+++++||.++|+++|+.||||+|++|+++|+.||.|+.+||.++++++.+.+.+||||||||.|++.|+.+++.|.+.|+
T Consensus 419 ~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi 498 (656)
T PRK12898 419 REVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGL 498 (656)
T ss_pred hHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEeccCCcchhhHHHHHHhcCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcc
Q 002707 356 PHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPK 435 (890)
Q Consensus 356 ~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (890)
+|.+||+ +++.+|+.+++.||++|.||||||||||||||+++
T Consensus 499 ~~~~Lhg--~~~~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~------------------------------------ 540 (656)
T PRK12898 499 PHQVLNA--KQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLE------------------------------------ 540 (656)
T ss_pred CEEEeeC--CcHHHHHHHHHHcCCCCcEEEEccchhcccCcCCc------------------------------------
Confidence 9999999 47899999999999999999999999999999987
Q ss_pred hhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHh
Q 002707 436 VLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLS 515 (890)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (890)
T Consensus 541 -------------------------------------------------------------------------------- 540 (656)
T PRK12898 541 -------------------------------------------------------------------------------- 540 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcccccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHHHHHhc
Q 002707 516 VLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRI 595 (890)
Q Consensus 516 ~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~ 595 (890)
++|.++||||||+|++|+|+|+++|++|||||||+||+|+||+|+||+||+.|+ ++++.+++..+
T Consensus 541 -------------~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~ 605 (656)
T PRK12898 541 -------------PGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFL--GSRGLAIRRME 605 (656)
T ss_pred -------------cchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHHHhhh--hHHHHHHHHHh
Confidence 368899999999999999999999999999999999999999999999999999 99999999998
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q 002707 596 TNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEV 639 (890)
Q Consensus 596 ~~~~~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~ 639 (890)
++.+ .+.++++++++++||+++|++||++||++++||++++.
T Consensus 606 ~~~~--~~~~~~~~~~~~~aQ~~~e~~~~~~Rk~~~~~d~~~~~ 647 (656)
T PRK12898 606 LLGP--RGGRALGALLLRRAQRRAERLHARARRALLHADEQLDK 647 (656)
T ss_pred cCCC--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7754 36699999999999999999999999999999998763
No 18
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=100.00 E-value=8.8e-59 Score=495.34 Aligned_cols=168 Identities=65% Similarity=1.000 Sum_probs=153.0
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
|+|||||++|+++||+|+||||+| |||+|||||+||++||+|||++||||||+|+++
T Consensus 76 ~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~ 155 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSD 155 (266)
T ss_dssp ----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETT
T ss_pred CcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccc
Confidence 689999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcchH
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~ 137 (890)
+++++|+++|+|||||||+++||||||||+|+..+...++| +++|||||||||||||+|+|||+|||
T Consensus 156 ~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r---~~~~~ivDEvDs~LiDea~~pl~is~---------- 222 (266)
T PF07517_consen 156 MSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQR---GFDFAIVDEVDSILIDEARTPLIISG---------- 222 (266)
T ss_dssp TEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SS---SSSEEEECTHHHHTTTGCCSEEEEEE----------
T ss_pred cCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccC---CCCEEEEeccceEEEecCcccccccc----------
Confidence 99999999999999999999999999999999998888888 99999999999999999999999999
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcccCcceEEeCCeEEEE
Q 002707 138 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 217 (890)
Q Consensus 138 ~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~dg~I~iV 217 (890)
T Consensus 223 -------------------------------------------------------------------------------- 222 (266)
T PF07517_consen 223 -------------------------------------------------------------------------------- 222 (266)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHH
Q 002707 218 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 283 (890)
Q Consensus 218 D~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~ 283 (890)
+||||+|+|+++|+|+||||+||++|++|+||||||+++++||+
T Consensus 223 ----------------------~Ke~~~i~~~~~t~a~is~q~~f~~Y~~l~GmTGTa~~~~~e~~ 266 (266)
T PF07517_consen 223 ----------------------AKEGLKITPESLTLASISYQNFFRLYPKLSGMTGTAKTEAKEFW 266 (266)
T ss_dssp ----------------------HHTTS----SEEEEEEEEHHHHHTTSSEEEEEESSTGGGHHHHH
T ss_pred ----------------------cccCCccCCCCeEEEEeehHHHHHhcchheeeCCCChhhHhhcC
Confidence 99999999999999999999999999999999999999999996
No 19
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=100.00 E-value=1.6e-46 Score=390.09 Aligned_cols=214 Identities=31% Similarity=0.493 Sum_probs=185.1
Q ss_pred CccchhHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 002707 602 PIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 681 (890)
Q Consensus 602 ~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~ 681 (890)
||+|++++++|++||++||++||++||+|++||+|||.||++||++|++||+++ ++.+.+.+|++++|+.+|+.+.++
T Consensus 1 pIe~~~i~~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~~--~~~~~i~~~~~~~i~~~v~~~~~~ 78 (214)
T PF07516_consen 1 PIESKMISKSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEGE--DLEEIILEMIEDVIDDIVDEYIPE 78 (214)
T ss_dssp SB-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--CCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHHHccc
Confidence 899999999999999999999999999999999999999999999999999754 699999999999999999999988
Q ss_pred CCCCCccCHHHHHHHHHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhh
Q 002707 682 LKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWL 761 (890)
Q Consensus 682 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 761 (890)
...+++|++++|...+...++.... +++ ...
T Consensus 79 ~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~------------------------------~~~-------------- 109 (214)
T PF07516_consen 79 KDSPEEWDIEGLKDFLNQNFNLDFD-----ISP------------------------------EDL-------------- 109 (214)
T ss_dssp SSSSTSSCHHHHHHHHHHCSSSSSC-----HCS------------------------------CHH--------------
T ss_pred ccCcccccHHHHHHHHHHHcCCCcc-----hhH------------------------------HHH--------------
Confidence 8777999999998877654321000 000 000
Q ss_pred hhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccc
Q 002707 762 AICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRS 841 (890)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~y~~k~~~~~~~~~~~~~~ER~ilL~aID~~W~eHLd~Md~LRegI~LRs 841 (890)
....+.++++++|.+.+...|..+ ...++++.+++++|.+||++||.+|++||++|++||+|||||+
T Consensus 110 -----------~~~~~~~~~~~~l~~~~~~~~~~k--~~~~~~~~~~~~eR~ilL~~ID~~W~~HL~~m~~Lr~~I~lR~ 176 (214)
T PF07516_consen 110 -----------INNKDKEELKKYLFEQVEESYERK--EEEIGEEQFNEFERYILLKAIDQNWKDHLDNMDQLREGIGLRS 176 (214)
T ss_dssp -----------SSSSTCHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCTT
T ss_pred -----------hccCCHHHHHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 012345789999999999999764 4567899999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q 002707 842 FGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWS 879 (890)
Q Consensus 842 YgQKDPL~EYkkEAf~lF~~M~~~I~~~iv~~L~~~~~ 879 (890)
||||||+.|||+|||+||++|+.+|+..++++||++++
T Consensus 177 y~QkdPl~EYk~Ea~~lF~~m~~~i~~~i~~~l~~~~i 214 (214)
T PF07516_consen 177 YGQKDPLVEYKREAFELFEEMLENIREDIIRNLFRSQI 214 (214)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-B-
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999863
No 20
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [].; GO: 0017038 protein import, 0016020 membrane; PDB: 3DIN_B 3JUX_A 3IQY_A 2IBM_A 3DL8_A 3JV2_B 3IQM_A 1TF2_A 1TF5_A 1M74_A ....
Probab=99.98 E-value=1.1e-32 Score=260.37 Aligned_cols=109 Identities=43% Similarity=0.722 Sum_probs=103.6
Q ss_pred CCCcchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcC-CCCCCCCC-cHHHHHHHHHHHHHhcccCcceE
Q 002707 131 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALET-NDLWDEND-PWARFVMNALKAKEFYRRDVQYI 208 (890)
Q Consensus 131 ~~~~~y~~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~-~~l~~~~~-~~~~~i~~Al~A~~l~~~d~dYi 208 (890)
.+++.|..++++++.|+++.||++|+++++|+||+.|+.+++.++++ +++|+..+ +|.+||.+||+|+++|++|+|||
T Consensus 3 ~~~~~y~~a~~~~~~L~~~~dy~vde~~~~v~LT~~G~~~~e~~~~~~~~l~~~~~~~~~~~i~~AL~A~~l~~rd~dYi 82 (113)
T PF01043_consen 3 DSSNLYREADKFAKQLKEDEDYEVDEKQRTVELTEKGIEKAEKLLGISDNLYDEENSELYHHINQALKAHHLFKRDVDYI 82 (113)
T ss_dssp SCHHHHHHHHHHHHHSHTTTSECECTSTTEEEESHHHHHHHHHHHTSSSSTTSTTCHHHHHHHHHHHHHHHCSTTTTSEE
T ss_pred hhHHHHHHHHHHHHhCCCCCCEEEeCCCCeeeEhHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHHHHHHhCCcceE
Confidence 45678999999999999999999999999999999999999999999 99999988 99999999999999999999999
Q ss_pred EeCCeEEEEeCCCCccccCcccCchHHHHHH
Q 002707 209 VRNGKALIINELTGRVEEKRRWSEGIHQAVE 239 (890)
Q Consensus 209 V~dg~I~iVD~~TGR~~~gr~ws~GLHQalE 239 (890)
|+||+|+|||++|||+||||+||+|||||||
T Consensus 83 V~dg~V~IVDe~TGR~m~gRrws~GLHQaIE 113 (113)
T PF01043_consen 83 VRDGEVVIVDEFTGRIMPGRRWSDGLHQAIE 113 (113)
T ss_dssp EETTEEEEBCTTTTSEBTT--STTTHHHHHH
T ss_pred EEcCEEEEEECCCCCcCCCCcCCchhhHhhC
Confidence 9999999999999999999999999999998
No 21
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.39 E-value=2.2e-11 Score=140.28 Aligned_cols=85 Identities=22% Similarity=0.322 Sum_probs=60.5
Q ss_pred EeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEE
Q 002707 309 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITIS 386 (890)
Q Consensus 309 ~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIA 386 (890)
+.+...|. .++..+... ....++||+|.+...++.+++.|.+.|++...+++...+.+++. ++. +.| .-.|-||
T Consensus 226 ~~~~~~k~-~~l~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~-~l~~F~~g-~~~iLVa 301 (456)
T PRK10590 226 FVDKKRKR-ELLSQMIGK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTR-ALADFKSG-DIRVLVA 301 (456)
T ss_pred EcCHHHHH-HHHHHHHHc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH-HHHHHHcC-CCcEEEE
Confidence 33444443 344444332 35678999999999999999999999999999998533333332 332 345 4479999
Q ss_pred cCCCCCCccee
Q 002707 387 TNMAGRGTDII 397 (890)
Q Consensus 387 TNMAGRGTDIk 397 (890)
|+.++||.||.
T Consensus 302 Tdv~~rGiDip 312 (456)
T PRK10590 302 TDIAARGLDIE 312 (456)
T ss_pred ccHHhcCCCcc
Confidence 99999999993
No 22
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.39 E-value=2.7e-11 Score=138.00 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=64.7
Q ss_pred EEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEE
Q 002707 308 SFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITI 385 (890)
Q Consensus 308 i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTI 385 (890)
++.+...|...+..-+.. .....+||+|.+...++.+++.|.+.|++...+++.-...+++ ++++ +.| .-.|-|
T Consensus 235 ~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~-~~l~~F~~g-~~~vLV 310 (423)
T PRK04837 235 FYPSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRL-RILEEFTRG-DLDILV 310 (423)
T ss_pred EeCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHH-HHHHHHHcC-CCcEEE
Confidence 455667777766655433 3467899999999999999999999999999999852223333 3444 455 447999
Q ss_pred EcCCCCCCccee
Q 002707 386 STNMAGRGTDII 397 (890)
Q Consensus 386 ATNMAGRGTDIk 397 (890)
||++|+||.||.
T Consensus 311 aTdv~~rGiDip 322 (423)
T PRK04837 311 ATDVAARGLHIP 322 (423)
T ss_pred EechhhcCCCcc
Confidence 999999999993
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.36 E-value=4.9e-11 Score=136.05 Aligned_cols=226 Identities=20% Similarity=0.235 Sum_probs=138.8
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHHHHhhccC--CCCeeecCcchhhhHHhhhcccCcchhcccCCCC
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR--CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKP 102 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~rr~aY~--~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~ 102 (890)
|++....||..=++++..+..++|++++.+..+.+.......+. +||+.||..-| ++++..+- ...+ .
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~~~~~~------~~~~---~ 147 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRL-LQYIKEEN------FDCR---A 147 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHH-HHHHHcCC------cCcc---c
Confidence 77788889988888889999999999999988877666655554 58999999765 35554321 1234 7
Q ss_pred cceEEeccCCeeeecCCCCcccccCCCCCCCcchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcCCCCCC
Q 002707 103 FHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD 182 (890)
Q Consensus 103 ~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~ 182 (890)
+.++||||+|.|+ |.+ ....+ +.+
T Consensus 148 v~~lViDEah~~l-~~~---------------~~~~~--------------------------------~~i-------- 171 (434)
T PRK11192 148 VETLILDEADRML-DMG---------------FAQDI--------------------------------ETI-------- 171 (434)
T ss_pred CCEEEEECHHHHh-CCC---------------cHHHH--------------------------------HHH--------
Confidence 8999999999763 100 00000 000
Q ss_pred CCCcHHHHHHHHHHHHHhcccCcceEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHH
Q 002707 183 ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLF 262 (890)
Q Consensus 183 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~F 262 (890)
.. . ..|
T Consensus 172 ---------~~-----~----------------------------~~~-------------------------------- 177 (434)
T PRK11192 172 ---------AA-----E----------------------------TRW-------------------------------- 177 (434)
T ss_pred ---------HH-----h----------------------------Ccc--------------------------------
Confidence 00 0 000
Q ss_pred hhcCccccccCCchh-HHHHHHhhhCCC--eEEcCCCCCcccccCCCcEE-eC-hhHHHHHHHHHHHHhhhCCCcEEEEe
Q 002707 263 KLYPKLSGMTGTAKT-EEKEFLKMFQMP--VIEVPTNLPNIRVDLPIQSF-AT-ARGKWEYARQEVESMFRLGRPVLVGS 337 (890)
Q Consensus 263 r~Y~kL~GmTGTa~t-e~~Ef~~iY~l~--vv~IPt~kp~~R~d~pd~i~-~t-~~~k~~AIi~ei~~~~~~grPVLIgt 337 (890)
-.++.+||+|... ...+|.+-+..+ .+.+.+.... +......++ .+ ...|.. ++..+.+. ..+.++||+|
T Consensus 178 --~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~~k~~-~l~~l~~~-~~~~~~lVF~ 252 (434)
T PRK11192 178 --RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRE-RKKIHQWYYRADDLEHKTA-LLCHLLKQ-PEVTRSIVFV 252 (434)
T ss_pred --ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCccc-ccCceEEEEEeCCHHHHHH-HHHHHHhc-CCCCeEEEEe
Confidence 0134678888754 345555433222 2222221111 111111222 22 233433 34344332 3567899999
Q ss_pred cchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH-hcCCCCcEEEEcCCCCCCcce
Q 002707 338 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDI 396 (890)
Q Consensus 338 ~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa-~AG~~G~VTIATNMAGRGTDI 396 (890)
.+.+.++.++..|...|++...+++.-...+++..+-. +.| .-.|.|||++|+||.||
T Consensus 253 ~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G-~~~vLVaTd~~~~GiDi 311 (434)
T PRK11192 253 RTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG-RVNVLVATDVAARGIDI 311 (434)
T ss_pred CChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC-CCcEEEEccccccCccC
Confidence 99999999999999999999999985333344322222 445 45799999999999998
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.35 E-value=7e-11 Score=136.66 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCC
Q 002707 312 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNM 389 (890)
Q Consensus 312 ~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNM 389 (890)
..+|+..+...+.. ..+..+||+|.|.+.++.+++.|.+.|++...+++.-...++. +++. +.| .-.|.||||.
T Consensus 319 ~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~-~~~~~Fr~G-~~~vLvaT~~ 394 (475)
T PRK01297 319 GSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRI-KTLEGFREG-KIRVLVATDV 394 (475)
T ss_pred chhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHH-HHHHHHhCC-CCcEEEEccc
Confidence 34555555443332 3456799999999999999999999999988888842222332 3444 355 4579999999
Q ss_pred CCCCcce
Q 002707 390 AGRGTDI 396 (890)
Q Consensus 390 AGRGTDI 396 (890)
++||.||
T Consensus 395 l~~GIDi 401 (475)
T PRK01297 395 AGRGIHI 401 (475)
T ss_pred cccCCcc
Confidence 9999999
No 25
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.35 E-value=2.3e-10 Score=136.60 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=76.6
Q ss_pred cccccCCchhH-HHHHHhhhCCC--eEEc-CCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhH
Q 002707 268 LSGMTGTAKTE-EKEFLKMFQMP--VIEV-PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENS 343 (890)
Q Consensus 268 L~GmTGTa~te-~~Ef~~iY~l~--vv~I-Pt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~S 343 (890)
+.+||+|+... ..++.+.+++. ++.+ ..++|..+.. + .....+...++..+.. ..|.++||+|.|++.+
T Consensus 177 ~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~----v-~~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~ 249 (607)
T PRK11057 177 FMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYT----L-VEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKV 249 (607)
T ss_pred EEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceee----e-eeccchHHHHHHHHHh--cCCCCEEEEECcHHHH
Confidence 45677777653 33455555443 2222 3334433211 1 1122233445544432 4689999999999999
Q ss_pred HHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCCCCCCccee
Q 002707 344 EYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 344 E~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNMAGRGTDIk 397 (890)
+.++..|.+.|++...+++.-...+++ ++++ ..| .-.|.|||+.+|||.||.
T Consensus 250 e~la~~L~~~g~~v~~~Ha~l~~~~R~-~i~~~F~~g-~~~VLVaT~a~~~GIDip 303 (607)
T PRK11057 250 EDTAARLQSRGISAAAYHAGLDNDVRA-DVQEAFQRD-DLQIVVATVAFGMGINKP 303 (607)
T ss_pred HHHHHHHHhCCCCEEEecCCCCHHHHH-HHHHHHHCC-CCCEEEEechhhccCCCC
Confidence 999999999999999999852222232 3444 245 357999999999999993
No 26
>PTZ00110 helicase; Provisional
Probab=99.33 E-value=9.2e-11 Score=138.28 Aligned_cols=85 Identities=22% Similarity=0.364 Sum_probs=64.1
Q ss_pred ChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcC
Q 002707 311 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTN 388 (890)
Q Consensus 311 t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATN 388 (890)
...+|...+.+-+......+..+||+|.+.+.++.|+..|...|++...+++...+.+++ +++. +.| ...|.|||+
T Consensus 358 ~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~-~il~~F~~G-~~~ILVaTd 435 (545)
T PTZ00110 358 EEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERT-WVLNEFKTG-KSPIMIATD 435 (545)
T ss_pred echhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHH-HHHHHHhcC-CCcEEEEcc
Confidence 345566666655555445789999999999999999999999999998898853333443 2443 334 346999999
Q ss_pred CCCCCccee
Q 002707 389 MAGRGTDII 397 (890)
Q Consensus 389 MAGRGTDIk 397 (890)
.|+||.||.
T Consensus 436 v~~rGIDi~ 444 (545)
T PTZ00110 436 VASRGLDVK 444 (545)
T ss_pred hhhcCCCcc
Confidence 999999994
No 27
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.31 E-value=1.1e-10 Score=138.29 Aligned_cols=85 Identities=22% Similarity=0.254 Sum_probs=63.5
Q ss_pred EeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEE
Q 002707 309 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITIS 386 (890)
Q Consensus 309 ~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIA 386 (890)
+....+|...++.-+.. ..+.++||+|.+...++.|++.|.+.|++...+++.-...+++ .++. +.| .-.|.||
T Consensus 238 ~~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~-~il~~Fr~G-~~~VLVa 313 (572)
T PRK04537 238 FPADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRE-SLLNRFQKG-QLEILVA 313 (572)
T ss_pred ecCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH-HHHHHHHcC-CCeEEEE
Confidence 44556666665544432 4688999999999999999999999999999999853333343 2333 345 4589999
Q ss_pred cCCCCCCccee
Q 002707 387 TNMAGRGTDII 397 (890)
Q Consensus 387 TNMAGRGTDIk 397 (890)
|++++||.||.
T Consensus 314 Tdv~arGIDip 324 (572)
T PRK04537 314 TDVAARGLHID 324 (572)
T ss_pred ehhhhcCCCcc
Confidence 99999999994
No 28
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.30 E-value=2.8e-10 Score=136.20 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=61.7
Q ss_pred ChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH-hcCCCCcEEEEcCC
Q 002707 311 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNM 389 (890)
Q Consensus 311 t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa-~AG~~G~VTIATNM 389 (890)
....|..+++..+.. .....+||+|.+...++.|++.|.+.|+....|++.-....+|.-+-. +.| .-.|-|||++
T Consensus 228 ~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G-~~~ILVATdv 304 (629)
T PRK11634 228 WGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG-RLDILIATDV 304 (629)
T ss_pred chhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC-CCCEEEEcch
Confidence 344677776655432 245689999999999999999999999999999985323344432222 445 4469999999
Q ss_pred CCCCccee
Q 002707 390 AGRGTDII 397 (890)
Q Consensus 390 AGRGTDIk 397 (890)
|+||.||.
T Consensus 305 ~arGIDip 312 (629)
T PRK11634 305 AARGLDVE 312 (629)
T ss_pred HhcCCCcc
Confidence 99999994
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.29 E-value=2.2e-10 Score=131.90 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=62.4
Q ss_pred ChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH-hcCCCCcEEEEcCC
Q 002707 311 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNM 389 (890)
Q Consensus 311 t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa-~AG~~G~VTIATNM 389 (890)
....|+.++..-+. ...+.++||+|.+.+.++.+++.|.+.|++...+++.-.+.+++.-+-. +.| ...|-|||+.
T Consensus 225 ~~~~k~~~l~~ll~--~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g-~~~vLVaTdv 301 (460)
T PRK11776 225 SPDERLPALQRLLL--HHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR-SCSVLVATDV 301 (460)
T ss_pred CcHHHHHHHHHHHH--hcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCcEEEEecc
Confidence 34457777665543 2356789999999999999999999999999999885333344432222 345 4579999999
Q ss_pred CCCCccee
Q 002707 390 AGRGTDII 397 (890)
Q Consensus 390 AGRGTDIk 397 (890)
|+||.||.
T Consensus 302 ~~rGiDi~ 309 (460)
T PRK11776 302 AARGLDIK 309 (460)
T ss_pred cccccchh
Confidence 99999993
No 30
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.28 E-value=1.6e-10 Score=135.39 Aligned_cols=128 Identities=17% Similarity=0.275 Sum_probs=81.7
Q ss_pred ccccccCCchhHHHHHHhhhCCCeE--EcC-CCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhH
Q 002707 267 KLSGMTGTAKTEEKEFLKMFQMPVI--EVP-TNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENS 343 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~iY~l~vv--~IP-t~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~S 343 (890)
++.++|+|+..+.+.+...+.-+.+ .+. ++.+... .....++.....|...+.+.+......+.|+||+|.|...+
T Consensus 302 q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~-v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a 380 (518)
T PLN00206 302 QVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKA-VKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGA 380 (518)
T ss_pred cEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcc-eeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhH
Confidence 4567788877666666655543333 332 2222211 12223455555666666655544333456899999999999
Q ss_pred HHHHHHHHh-CCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCCCCCCccee
Q 002707 344 EYLSDLLKQ-QGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 344 E~ls~~L~~-~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNMAGRGTDIk 397 (890)
+.+++.|.. .|++...+++.-...+++ +++. ++|. -.|-|||+.||||.||.
T Consensus 381 ~~l~~~L~~~~g~~~~~~Hg~~~~~eR~-~il~~Fr~G~-~~ILVaTdvl~rGiDip 435 (518)
T PLN00206 381 DLLANAITVVTGLKALSIHGEKSMKERR-EVMKSFLVGE-VPVIVATGVLGRGVDLL 435 (518)
T ss_pred HHHHHHHhhccCcceEEeeCCCCHHHHH-HHHHHHHCCC-CCEEEEecHhhccCCcc
Confidence 999999975 688888888853333343 2333 4564 46999999999999993
No 31
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.21 E-value=6.7e-10 Score=132.01 Aligned_cols=80 Identities=21% Similarity=0.246 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCCC
Q 002707 313 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMA 390 (890)
Q Consensus 313 ~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNMA 390 (890)
..+...+.+.+... .|+++||+|.|...++.+++.|...|++...+++.-...+++ .++. ..|. -.|.|||+.+
T Consensus 209 ~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~-~i~~~F~~g~-~~vlVaT~a~ 284 (591)
T TIGR01389 209 NNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRA-ENQEDFLYDD-VKVMVATNAF 284 (591)
T ss_pred CCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHH-HHHHHHHcCC-CcEEEEechh
Confidence 34555666655542 389999999999999999999999999988888752222232 2333 3454 5899999999
Q ss_pred CCCcce
Q 002707 391 GRGTDI 396 (890)
Q Consensus 391 GRGTDI 396 (890)
|+|.|+
T Consensus 285 ~~GID~ 290 (591)
T TIGR01389 285 GMGIDK 290 (591)
T ss_pred hccCcC
Confidence 999997
No 32
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.17 E-value=1.9e-09 Score=133.44 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCCCCCCcc
Q 002707 318 YARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTD 395 (890)
Q Consensus 318 AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNMAGRGTD 395 (890)
.+...+... ..+.+.+|+|.|..++|.++..|.+.|+....++|.-...+++ .+.. ..| .-.|.|||+.+|||.|
T Consensus 669 ~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~-~vqe~F~~G-ei~VLVATdAFGMGID 745 (1195)
T PLN03137 669 DIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRA-FVQKQWSKD-EINIICATVAFGMGIN 745 (1195)
T ss_pred HHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHH-HHHHHHhcC-CCcEEEEechhhcCCC
Confidence 344444332 2467899999999999999999999999999998852222232 2322 234 3579999999999999
Q ss_pred e
Q 002707 396 I 396 (890)
Q Consensus 396 I 396 (890)
+
T Consensus 746 k 746 (1195)
T PLN03137 746 K 746 (1195)
T ss_pred c
Confidence 9
No 33
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.10 E-value=5.9e-10 Score=104.15 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=67.5
Q ss_pred EEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHH-HHHHhcCCC-CcEEE
Q 002707 308 SFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA-ETVAQAGRK-YAITI 385 (890)
Q Consensus 308 i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA-~IIa~AG~~-G~VTI 385 (890)
++.+.+.|...+.+.+.+..+.+.++||+|.++..++.+.+.|++.+++..++++.. ...|. .+++.-... ..|.|
T Consensus 6 ~~~~~~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~~ili 83 (131)
T cd00079 6 VLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDG--SQEEREEVLKDFREGEIVVLV 83 (131)
T ss_pred EEECCHHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCC--CHHHHHHHHHHHHcCCCcEEE
Confidence 344545788899988888777899999999999999999999999889988888752 23333 344322222 36999
Q ss_pred EcCCCCCCcce
Q 002707 386 STNMAGRGTDI 396 (890)
Q Consensus 386 ATNMAGRGTDI 396 (890)
+|+++|+|.|+
T Consensus 84 ~t~~~~~G~d~ 94 (131)
T cd00079 84 ATDVIARGIDL 94 (131)
T ss_pred EcChhhcCcCh
Confidence 99999999998
No 34
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.08 E-value=1.5e-09 Score=123.73 Aligned_cols=190 Identities=17% Similarity=0.271 Sum_probs=128.9
Q ss_pred HHHHHHHHhcccCcceEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCe-------eEEEeechhHHhh
Q 002707 192 MNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV-------VVAQITYQSLFKL 264 (890)
Q Consensus 192 ~~Al~A~~l~~~d~dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~-------t~a~IT~q~~Fr~ 264 (890)
...|--++|.-.+..|+|-|.-=. |.++-+-+-++--|+.=--...+|.+. .++..|-. +.
T Consensus 384 id~Lenr~lvl~qctyvvldeadr---------miDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~---k~ 451 (673)
T KOG0333|consen 384 IDSLENRYLVLNQCTYVVLDEADR---------MIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSS---KK 451 (673)
T ss_pred HHHHHHHHHHhccCceEeccchhh---------hhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccc---cc
Confidence 344556677677788887764222 333445555555555432222222111 11111111 35
Q ss_pred cCccccccCCchhHHHHHHhhh--CCCeEEcCC-CCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchh
Q 002707 265 YPKLSGMTGTAKTEEKEFLKMF--QMPVIEVPT-NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 341 (890)
Q Consensus 265 Y~kL~GmTGTa~te~~Ef~~iY--~l~vv~IPt-~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~ 341 (890)
|..-...|.|.....+-+.+.| .--|+.|-+ ++|.-|... -+++.++++||.++++-+.+. ..-|++|+....+
T Consensus 452 yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ-~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk 528 (673)
T KOG0333|consen 452 YRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQ-KVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKK 528 (673)
T ss_pred eeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchhe-EEEEecchHHHHHHHHHHHhC--CCCCEEEEEechh
Confidence 7778889999988877788777 444566754 566666654 466789999999998666543 5678999999999
Q ss_pred hHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH-hcCCCCcEEEEcCCCCCCccee
Q 002707 342 NSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 342 ~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa-~AG~~G~VTIATNMAGRGTDIk 397 (890)
.++.|++.|.+.|+.+..|+...++..+|-.+-. ++| .+.|-|||+.||||.||.
T Consensus 529 ~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~-t~dIlVaTDvAgRGIDIp 584 (673)
T KOG0333|consen 529 GADALAKILEKAGYKVTTLHGGKSQEQRENALADFREG-TGDILVATDVAGRGIDIP 584 (673)
T ss_pred hHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhc-CCCEEEEecccccCCCCC
Confidence 9999999999999999999986555555533333 455 678999999999999995
No 35
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.06 E-value=6.8e-09 Score=125.60 Aligned_cols=74 Identities=22% Similarity=0.392 Sum_probs=59.6
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHHHHhhcc------CCCCeeecCcchhhhHHhhhcccCcchhccc
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMR 98 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~rr~aY------~~DItYgT~~efgFDyLRD~~~~~~~~~v~r 98 (890)
+++....||..=++.+..++..+|++|++.+++++..+|++.+ .+||+.||..-+ .+. ....
T Consensus 315 ilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll-----~~~-------v~~~ 382 (681)
T PRK10917 315 LMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALI-----QDD-------VEFH 382 (681)
T ss_pred EEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHh-----ccc-------chhc
Confidence 8888999999999999999999999999999999987776554 379999997543 221 1123
Q ss_pred CCCCcceEEeccCCe
Q 002707 99 WPKPFHFAIVDEVDS 113 (890)
Q Consensus 99 ~~R~~~~aIVDEvDS 113 (890)
.+.++||||+|.
T Consensus 383 ---~l~lvVIDE~Hr 394 (681)
T PRK10917 383 ---NLGLVIIDEQHR 394 (681)
T ss_pred ---ccceEEEechhh
Confidence 788999999984
No 36
>PTZ00424 helicase 45; Provisional
Probab=99.06 E-value=1.2e-08 Score=114.77 Aligned_cols=67 Identities=13% Similarity=0.297 Sum_probs=52.1
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCCCCCCccee
Q 002707 329 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 329 ~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNMAGRGTDIk 397 (890)
....+||+|.+.+.++.+++.|...|+....+++.-...+++ .++. +.|. -.|.|||++++||.||.
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~-~i~~~f~~g~-~~vLvaT~~l~~GiDip 334 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRD-LIMREFRSGS-TRVLITTDLLARGIDVQ 334 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHH-HHHHHHHcCC-CCEEEEcccccCCcCcc
Confidence 345799999999999999999999999999999852222222 2333 4453 47999999999999993
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=1.7e-08 Score=116.96 Aligned_cols=124 Identities=17% Similarity=0.212 Sum_probs=82.0
Q ss_pred ccccccCCchhHH-HHHHhhhCC---CeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhh
Q 002707 267 KLSGMTGTAKTEE-KEFLKMFQM---PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVEN 342 (890)
Q Consensus 267 kL~GmTGTa~te~-~Ef~~iY~l---~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~ 342 (890)
.+.|||+|+.... .++.+..++ .++....++|..+.. +-......+..+.+.+.+ ...|..+||+|.|++.
T Consensus 164 ~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~----v~~~~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~ 238 (470)
T TIGR00614 164 PIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYE----VRRKTPKILEDLLRFIRK-EFKGKSGIIYCPSRKK 238 (470)
T ss_pred ceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEE----EEeCCccHHHHHHHHHHH-hcCCCceEEEECcHHH
Confidence 5889999998653 455555544 344444555543221 111212334455544443 3468888999999999
Q ss_pred HHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCCCCCCccee
Q 002707 343 SEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 343 SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNMAGRGTDIk 397 (890)
++.+++.|.+.|++...+++.-...+++ +++. ..| .-.|.|||+++|||.|+.
T Consensus 239 ~e~la~~L~~~g~~~~~~H~~l~~~eR~-~i~~~F~~g-~~~vLVaT~~~~~GID~p 293 (470)
T TIGR00614 239 SEQVTASLQNLGIAAGAYHAGLEISARD-DVHHKFQRD-EIQVVVATVAFGMGINKP 293 (470)
T ss_pred HHHHHHHHHhcCCCeeEeeCCCCHHHHH-HHHHHHHcC-CCcEEEEechhhccCCcc
Confidence 9999999999999998898852222232 2333 345 447999999999999993
No 38
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.92 E-value=5.4e-08 Score=116.92 Aligned_cols=74 Identities=14% Similarity=0.308 Sum_probs=57.8
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHHHHhhcc------CCCCeeecCcchhhhHHhhhcccCcchhccc
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMR 98 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~rr~aY------~~DItYgT~~efgFDyLRD~~~~~~~~~v~r 98 (890)
+++...-||..=++.+..++..+|++|++.+++++..+|+... .+||+.||.+-+ .+.+ ...
T Consensus 289 ilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll-----~~~~-------~~~ 356 (630)
T TIGR00643 289 LMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALI-----QEKV-------EFK 356 (630)
T ss_pred EECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHH-----hccc-------ccc
Confidence 7778888999888888889988999999999998887766543 469999997633 2221 123
Q ss_pred CCCCcceEEeccCCe
Q 002707 99 WPKPFHFAIVDEVDS 113 (890)
Q Consensus 99 ~~R~~~~aIVDEvDS 113 (890)
.+.++||||+|.
T Consensus 357 ---~l~lvVIDEaH~ 368 (630)
T TIGR00643 357 ---RLALVIIDEQHR 368 (630)
T ss_pred ---ccceEEEechhh
Confidence 688999999985
No 39
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.89 E-value=5.4e-08 Score=118.88 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=71.2
Q ss_pred CCcchhHHHHHHhhcCC--eeeccc-------------------------ceeccchhhhccHHHHHHHHHHhCCccccc
Q 002707 2 RHFDVQIIGGAVLHDGS--IAEMKT-------------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLI 54 (890)
Q Consensus 2 r~ydVQliGg~~L~~G~--IaEMkT-------------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i 54 (890)
+||.+|..+--++.+|+ |+...| +++...-||..=...+..+- ..|++++..
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~ 114 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT-LRGVRPATY 114 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEE
Confidence 58899988888888885 344444 67777888876666666554 457888887
Q ss_pred cCCCCHHHHhhccC-CCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCee
Q 002707 55 QRGMIPEERRSNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 114 (890)
Q Consensus 55 ~~~~~~~~rr~aY~-~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSi 114 (890)
..+.+.++|+.... ++|+.+|..-+-...|+++.. -....+ .+.|+||||+|.+
T Consensus 115 ~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~---~~~~l~---~l~~vViDEah~~ 169 (742)
T TIGR03817 115 DGDTPTEERRWAREHARYVLTNPDMLHRGILPSHAR---WARFLR---RLRYVVIDECHSY 169 (742)
T ss_pred eCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhH---HHHHHh---cCCEEEEeChhhc
Confidence 77777777765444 699999984443333322110 112345 7899999999975
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.89 E-value=6.3e-08 Score=120.32 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhC------CCCceEeccCCcchhhHHH-HHH--hcCCCCcE
Q 002707 313 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ------GIPHNVLNARPKYAAREAE-TVA--QAGRKYAI 383 (890)
Q Consensus 313 ~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~------gi~h~vLNA~~k~~~~EA~-IIa--~AG~~G~V 383 (890)
......+...+.+..+.++++||+|+|...++.++..|++. +.+..++++. -...+.. +.+ +.|.. .|
T Consensus 267 ~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~--ls~~~R~~ve~~fk~G~i-~v 343 (876)
T PRK13767 267 EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSS--LSREVRLEVEEKLKRGEL-KV 343 (876)
T ss_pred chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCC--CCHHHHHHHHHHHHcCCC-eE
Confidence 34455666677777778999999999999999999999873 3445556653 1122222 322 55654 79
Q ss_pred EEEcCCCCCCcce
Q 002707 384 TISTNMAGRGTDI 396 (890)
Q Consensus 384 TIATNMAGRGTDI 396 (890)
.|||+.++||.||
T Consensus 344 LVaTs~Le~GIDi 356 (876)
T PRK13767 344 VVSSTSLELGIDI 356 (876)
T ss_pred EEECChHHhcCCC
Confidence 9999999999998
No 41
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.79 E-value=3e-07 Score=110.96 Aligned_cols=180 Identities=21% Similarity=0.275 Sum_probs=107.6
Q ss_pred ceEEeCCeEEEEeCCCCccccCcccCchHHHHHHh--HhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHH
Q 002707 206 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEA--KEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 283 (890)
Q Consensus 206 dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEa--KEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~ 283 (890)
||+= ++-++++|+..--......|-.+.....+. .+|..+.+. .---..++..+.+.-.+..-+|.|.+... +.
T Consensus 327 DYlp-~~~lv~ide~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~~~~e~~~~~~~~I~lSat~~~~~--~~ 402 (652)
T PRK05298 327 DYFP-DDFLLFIDESHVTVPQIGGMYNGDRSRKETLVEYGFRLPSA-LDNRPLKFEEFEAKVPQTIYVSATPGDYE--LE 402 (652)
T ss_pred hccC-CcceEEEechHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc-ccccCcCHHHHHHhcCCEEEEEcCCCccc--hh
Confidence 4552 456788888654444444554444443322 235444321 00124577777776666666666654321 11
Q ss_pred hhhCCCeE-E--cCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEe
Q 002707 284 KMFQMPVI-E--VPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVL 360 (890)
Q Consensus 284 ~iY~l~vv-~--IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vL 360 (890)
..-+ +++ . -|+..+. |..-......++..+++++.+..+.|..|||+|.|...++.|++.|...|++..++
T Consensus 403 ~~~~-~iv~~i~r~~~l~~-----p~~~~~~~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~ 476 (652)
T PRK05298 403 KSGG-VVVEQIIRPTGLLD-----PEIEVRPTKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYL 476 (652)
T ss_pred hccC-cchhhhhhccCCCC-----CceEEeeccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEE
Confidence 1010 111 1 1222211 11111223456789999999988999999999999999999999999999999888
Q ss_pred ccCCcchhhHHHHHH--hcCCCCcEEEEcCCCCCCccee
Q 002707 361 NARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 361 NA~~k~~~~EA~IIa--~AG~~G~VTIATNMAGRGTDIk 397 (890)
++.....+++ +++. +.|. -.|.|||++++||-|+.
T Consensus 477 h~~~~~~~R~-~~l~~f~~g~-i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 477 HSDIDTLERV-EIIRDLRLGE-FDVLVGINLLREGLDIP 513 (652)
T ss_pred ECCCCHHHHH-HHHHHHHcCC-ceEEEEeCHHhCCcccc
Confidence 7642222332 3444 3443 46788899999999994
No 42
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.68 E-value=2e-07 Score=103.61 Aligned_cols=131 Identities=14% Similarity=0.120 Sum_probs=79.7
Q ss_pred CccccccCCchhHHHHHHhhhCCCeEEc-CCCCCcccc-cCCCcEEeC-hhHHHHHHHHHHHHhhhCCCcEEEEecchhh
Q 002707 266 PKLSGMTGTAKTEEKEFLKMFQMPVIEV-PTNLPNIRV-DLPIQSFAT-ARGKWEYARQEVESMFRLGRPVLVGSTSVEN 342 (890)
Q Consensus 266 ~kL~GmTGTa~te~~Ef~~iY~l~vv~I-Pt~kp~~R~-d~pd~i~~t-~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~ 342 (890)
.++.+||+|......+|.+-+....... ++..+..+. .++...... ...+.. .+..+.+....++++||+|++++.
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEIS-SLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHH-HHHHHHHHhhCCCeEEEEECCHHH
Confidence 3789999999866666665554442221 222221122 222211111 122222 333444555678999999999999
Q ss_pred HHHHHHHHHhCCCC--ceEeccCCcchhhH---HHHHHhcC-CCCcEEEEcCCCCCCccee
Q 002707 343 SEYLSDLLKQQGIP--HNVLNARPKYAARE---AETVAQAG-RKYAITISTNMAGRGTDII 397 (890)
Q Consensus 343 SE~ls~~L~~~gi~--h~vLNA~~k~~~~E---A~IIa~AG-~~G~VTIATNMAGRGTDIk 397 (890)
++.+++.|++.+.+ ...++++-...+++ .++++.-. ....|.|||+.++||.||.
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~ 295 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS 295 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC
Confidence 99999999998764 55667642223332 33555322 2346999999999999994
No 43
>PRK13766 Hef nuclease; Provisional
Probab=98.63 E-value=4.5e-07 Score=111.18 Aligned_cols=84 Identities=24% Similarity=0.339 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHhh--hCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCC--------cchhhHHHHHH--hcCC
Q 002707 312 ARGKWEYARQEVESMF--RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP--------KYAAREAETVA--QAGR 379 (890)
Q Consensus 312 ~~~k~~AIi~ei~~~~--~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~--------k~~~~EA~IIa--~AG~ 379 (890)
...||..+.+-+.+.. ..+..|||+|.+...++.|.+.|...|++...+.+.. ...++. +++. +.|
T Consensus 345 ~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~-~~~~~F~~g- 422 (773)
T PRK13766 345 EHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQI-EILDKFRAG- 422 (773)
T ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHH-HHHHHHHcC-
Confidence 3468887776665543 5789999999999999999999999999887776520 011222 3443 345
Q ss_pred CCcEEEEcCCCCCCccee
Q 002707 380 KYAITISTNMAGRGTDII 397 (890)
Q Consensus 380 ~G~VTIATNMAGRGTDIk 397 (890)
...|-|||+++++|.||.
T Consensus 423 ~~~vLvaT~~~~eGldi~ 440 (773)
T PRK13766 423 EFNVLVSTSVAEEGLDIP 440 (773)
T ss_pred CCCEEEECChhhcCCCcc
Confidence 468999999999999993
No 44
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.63 E-value=4.6e-07 Score=109.30 Aligned_cols=177 Identities=18% Similarity=0.265 Sum_probs=114.5
Q ss_pred ceEEeCCeEEEEeCCCCccccCcccCchHHHHHHh--HhCCccccC--CeeEEEeechhHHhhcCccccccCCchhHHHH
Q 002707 206 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEA--KEGLKIQAD--SVVVAQITYQSLFKLYPKLSGMTGTAKTEEKE 281 (890)
Q Consensus 206 dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEa--KEgv~It~e--~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~E 281 (890)
||+ .++-+++||+..--...-+.|-.|.+...+. ..|..+.+. +. ..++..|.+.-.+..-+|.|-+...
T Consensus 324 DY~-p~d~lv~iDE~~~~~~q~~~m~~~~~~~~~~lve~g~~lp~~~~n~---~l~~~e~~~~~~q~I~lSaTp~~~e-- 397 (655)
T TIGR00631 324 DYF-PDDFLLVIDESHVTLPQIGGMYNGDRSRKQTLVEYGFRLPSALDNR---PLKFEEFEERINQVVYVSATPGPYE-- 397 (655)
T ss_pred HhC-CCccEEEEecHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCccccc---CcCHHHHHHhcCCEEEEECCCCcch--
Confidence 455 3566888998765555555555565554333 235554422 22 4578888887777677777765432
Q ss_pred HHhhhCCCeE-E-c-CCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCce
Q 002707 282 FLKMFQMPVI-E-V-PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 358 (890)
Q Consensus 282 f~~iY~l~vv-~-I-Pt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~ 358 (890)
....-+ ++ . + ||..+ .|..-......++..+++++.+..++|..|||+|.|...++.|++.|.+.|++..
T Consensus 398 ~~~~~~--iv~~i~rp~gl~-----~p~~~v~~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~ 470 (655)
T TIGR00631 398 LEQSGN--VVEQIIRPTGLL-----DPEIEVRPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVR 470 (655)
T ss_pred hhhccC--eeeeeccccCCC-----CCcEEEeeccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhcccee
Confidence 111112 22 2 2 33222 1212223445678899999999889999999999999999999999999999988
Q ss_pred EeccCCcchhhHHHHHH--hcCCCCcEEEEcCCCCCCccee
Q 002707 359 VLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 359 vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNMAGRGTDIk 397 (890)
.+++.....+++ +++. +.| .-.|.||||+++||.|+-
T Consensus 471 ~lh~~~~~~eR~-~~l~~fr~G-~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 471 YLHSEIDTLERV-EIIRDLRLG-EFDVLVGINLLREGLDLP 509 (655)
T ss_pred eeeCCCCHHHHH-HHHHHHhcC-CceEEEEcChhcCCeeeC
Confidence 887642223333 3444 345 346788899999999993
No 45
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.37 E-value=2.5e-06 Score=100.02 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHhc-CCCCcEEEEc-CCC
Q 002707 313 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQA-GRKYAITIST-NMA 390 (890)
Q Consensus 313 ~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~A-G~~G~VTIAT-NMA 390 (890)
..+-..|++.+....+.|+++||+|.+++.++.|++.|.+.|++..++++.....+++ .++... +....|.||| +++
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~-~i~~~~~~~~~~vLvaT~~~l 405 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRN-EMKKIAEGGKGIIIVASYGVF 405 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH-HHHHHHhCCCCeEEEEEccee
Confidence 3445556666666667899999999999999999999999999999999864444554 344322 2245689998 899
Q ss_pred CCCccee
Q 002707 391 GRGTDII 397 (890)
Q Consensus 391 GRGTDIk 397 (890)
|||.||.
T Consensus 406 ~eG~Dip 412 (501)
T PHA02558 406 STGISIK 412 (501)
T ss_pred ccccccc
Confidence 9999993
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.36 E-value=3.5e-06 Score=105.12 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=78.8
Q ss_pred ccccccCCchhHHH--HHHhhhCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHH
Q 002707 267 KLSGMTGTAKTEEK--EFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSE 344 (890)
Q Consensus 267 kL~GmTGTa~te~~--Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE 344 (890)
.+.+||+|.-...- -+....++.++..||.. |......+..... ..+.+.+.+...+|..|+|+|++++.++
T Consensus 601 ~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~~---~~i~~~i~~el~~g~qv~if~n~i~~~e 674 (926)
T TIGR00580 601 DVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEYDP---ELVREAIRRELLRGGQVFYVHNRIESIE 674 (926)
T ss_pred CEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEecCH---HHHHHHHHHHHHcCCeEEEEECCcHHHH
Confidence 68999999754322 22234455566666542 2211111111111 2233344444567888999999999999
Q ss_pred HHHHHHHhC--CCCceEeccCCcchhhHHHHHH-hcCCCCcEEEEcCCCCCCccee
Q 002707 345 YLSDLLKQQ--GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 345 ~ls~~L~~~--gi~h~vLNA~~k~~~~EA~IIa-~AG~~G~VTIATNMAGRGTDIk 397 (890)
.+++.|++. +++..++++.-...++|.-+-+ ..| .-.|-|||++++||.||.
T Consensus 675 ~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-k~~ILVaT~iie~GIDIp 729 (926)
T TIGR00580 675 KLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-EFQVLVCTTIIETGIDIP 729 (926)
T ss_pred HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEEECChhhcccccc
Confidence 999999985 6778888886333444433333 344 568999999999999994
No 47
>PRK14701 reverse gyrase; Provisional
Probab=98.33 E-value=3.1e-05 Score=101.35 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=70.2
Q ss_pred CcchhHHHHHHhhcCC--eeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCC--cccccc
Q 002707 3 HFDVQIIGGAVLHDGS--IAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGL--SVGLIQ 55 (890)
Q Consensus 3 ~ydVQliGg~~L~~G~--IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGL--svg~i~ 55 (890)
|.++|-...-.+.+|+ ++-|.| ||+...-||..=++.+..+...+|+ .+....
T Consensus 80 pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~ 159 (1638)
T PRK14701 80 FWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYH 159 (1638)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEe
Confidence 5566766666666665 566666 7888888998888888888888765 455666
Q ss_pred CCCCHHHHhhcc------CCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeee
Q 002707 56 RGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 115 (890)
Q Consensus 56 ~~~~~~~rr~aY------~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiL 115 (890)
++++.+++++.. ..||+|+|.. +-.+ ++.. .... .+.+++|||||+||
T Consensus 160 g~~s~~e~~~~~~~l~~g~~dILV~TPg-rL~~----~~~~----l~~~---~i~~iVVDEAD~ml 213 (1638)
T PRK14701 160 SNLRKKEKEEFLERIENGDFDILVTTAQ-FLAR----NFPE----MKHL---KFDFIFVDDVDAFL 213 (1638)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECCc-hhHH----hHHH----HhhC---CCCEEEEECceecc
Confidence 777776654332 3699999986 3333 3321 1113 79999999999998
No 48
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.25 E-value=7.2e-06 Score=92.29 Aligned_cols=126 Identities=20% Similarity=0.204 Sum_probs=77.1
Q ss_pred CccccccCCchhHHHH-HHhh--hCCCeEEcCCC-------------CCc--ccccCCC---cEEeCh---hHHHHHHHH
Q 002707 266 PKLSGMTGTAKTEEKE-FLKM--FQMPVIEVPTN-------------LPN--IRVDLPI---QSFATA---RGKWEYARQ 321 (890)
Q Consensus 266 ~kL~GmTGTa~te~~E-f~~i--Y~l~vv~IPt~-------------kp~--~R~d~pd---~i~~t~---~~k~~AIi~ 321 (890)
.++.+||+|+..+..+ +.+. .+-+++.|+-. +|. .|.-.|. .++... .+....+++
T Consensus 182 ~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~ 261 (357)
T TIGR03158 182 RKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAE 261 (357)
T ss_pred CcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEeCCchhHHHHHHHHH
Confidence 4899999999876544 4444 34455444333 110 1111111 112222 222334445
Q ss_pred HHHHhh--hCCCcEEEEecchhhHHHHHHHHHhCCC--CceEeccCCcchhhHHHHHHhcCCCCcEEEEcCCCCCCccee
Q 002707 322 EVESMF--RLGRPVLVGSTSVENSEYLSDLLKQQGI--PHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 322 ei~~~~--~~grPVLIgt~sI~~SE~ls~~L~~~gi--~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMAGRGTDIk 397 (890)
.+.+.+ ..|.++||+|.|+..++.+++.|++.|. ++..+++...+..++ +++ ...|-|||+.|+||.||.
T Consensus 262 ~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~-----~~~-~~~iLVaTdv~~rGiDi~ 335 (357)
T TIGR03158 262 EVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRE-----RAM-QFDILLGTSTVDVGVDFK 335 (357)
T ss_pred HHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHH-----Hhc-cCCEEEEecHHhcccCCC
Confidence 555544 3678999999999999999999998764 455566631122222 334 567999999999999994
No 49
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.24 E-value=1.3e-05 Score=97.13 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=78.6
Q ss_pred ccccccCCchhHHHHHHhhh-CCCeEEcCCC--CCcccccCCCc-------EEeChhHHHHHHHHHHHHhh-hCCCcEEE
Q 002707 267 KLSGMTGTAKTEEKEFLKMF-QMPVIEVPTN--LPNIRVDLPIQ-------SFATARGKWEYARQEVESMF-RLGRPVLV 335 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~iY-~l~vv~IPt~--kp~~R~d~pd~-------i~~t~~~k~~AIi~ei~~~~-~~grPVLI 335 (890)
++.-||+|...+.+.|.+.+ +..++.||.. .|..-.-.++. .|. ..++ ..++..+.... ..+..|||
T Consensus 323 q~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~-~~~k-~~~l~~L~~~~~~~~g~iLV 400 (675)
T PHA02653 323 SLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYI-EEEK-KNIVTALKKYTPPKGSSGIV 400 (675)
T ss_pred EEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhh-HHHH-HHHHHHHHHhhcccCCcEEE
Confidence 68999999977667786655 4667888742 22211100000 000 1111 22333333222 24678999
Q ss_pred EecchhhHHHHHHHHHhC--CCCceEeccCCcchhhHHHH--HHhcCCCCcEEEEcCCCCCCccee
Q 002707 336 GSTSVENSEYLSDLLKQQ--GIPHNVLNARPKYAAREAET--VAQAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 336 gt~sI~~SE~ls~~L~~~--gi~h~vLNA~~k~~~~EA~I--Ia~AG~~G~VTIATNMAGRGTDIk 397 (890)
+++++++++.+.+.|.+. +++.-.|++.- ..+|..+ +.+.| +-.|.||||.|.||-||.
T Consensus 401 Flpg~~ei~~l~~~L~~~~~~~~v~~LHG~L--sq~eq~l~~ff~~g-k~kILVATdIAERGIDIp 463 (675)
T PHA02653 401 FVASVSQCEEYKKYLEKRLPIYDFYIIHGKV--PNIDEILEKVYSSK-NPSIIISTPYLESSVTIR 463 (675)
T ss_pred EECcHHHHHHHHHHHHhhcCCceEEeccCCc--CHHHHHHHHHhccC-ceeEEeccChhhcccccc
Confidence 999999999999999987 67777888742 1223211 11345 347999999999999994
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.19 E-value=1.3e-05 Score=102.15 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=79.3
Q ss_pred ccccccCCchhHHHHHH--hhhCCCeEEcCCCCCcccccCCCcEEe-ChhHHHHHHHHHHHHhhhCCCcEEEEecchhhH
Q 002707 267 KLSGMTGTAKTEEKEFL--KMFQMPVIEVPTNLPNIRVDLPIQSFA-TARGKWEYARQEVESMFRLGRPVLVGSTSVENS 343 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~--~iY~l~vv~IPt~kp~~R~d~pd~i~~-t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~S 343 (890)
.+.+||+|.......+. ...++.++..|+.. |......+.. .......++..++ .+|..|+|+|++++.+
T Consensus 750 qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~~~~k~~il~el----~r~gqv~vf~n~i~~i 822 (1147)
T PRK10689 750 DILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDSLVVREAILREI----LRGGQVYYLYNDVENI 822 (1147)
T ss_pred cEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecCcHHHHHHHHHHH----hcCCeEEEEECCHHHH
Confidence 68999999865443332 34566667666653 2211111111 1112233444333 3566799999999999
Q ss_pred HHHHHHHHhC--CCCceEeccCCcchhhHHHHHH-hcCCCCcEEEEcCCCCCCccee
Q 002707 344 EYLSDLLKQQ--GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 344 E~ls~~L~~~--gi~h~vLNA~~k~~~~EA~IIa-~AG~~G~VTIATNMAGRGTDIk 397 (890)
+.+++.|++. +++..++++.-...++|.-+-+ ..| .-.|-|||++++||.||.
T Consensus 823 e~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-k~~VLVaTdIierGIDIP 878 (1147)
T PRK10689 823 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVLVCTTIIETGIDIP 878 (1147)
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-CCCEEEECchhhcccccc
Confidence 9999999987 7788888885333444443333 445 568999999999999994
No 51
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.17 E-value=1e-05 Score=100.00 Aligned_cols=122 Identities=16% Similarity=0.257 Sum_probs=76.1
Q ss_pred CccccccCCchhHHHHHHhhh-CCCeEEcCCC-CCcccccCCCcEEe--ChhHHHH-HHHHHHHHhh-hCCCcEEEEecc
Q 002707 266 PKLSGMTGTAKTEEKEFLKMF-QMPVIEVPTN-LPNIRVDLPIQSFA--TARGKWE-YARQEVESMF-RLGRPVLVGSTS 339 (890)
Q Consensus 266 ~kL~GmTGTa~te~~Ef~~iY-~l~vv~IPt~-kp~~R~d~pd~i~~--t~~~k~~-AIi~ei~~~~-~~grPVLIgt~s 339 (890)
.++..||+|...+ .|.+.+ +..++.+|.. .|+. ..|. ....++. ++...+...+ ..+..|||++++
T Consensus 150 lqlilmSATl~~~--~l~~~~~~~~~I~~~gr~~pV~------~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg 221 (812)
T PRK11664 150 LKLLIMSATLDND--RLQQLLPDAPVIVSEGRSFPVE------RRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPG 221 (812)
T ss_pred ceEEEEecCCCHH--HHHHhcCCCCEEEecCccccce------EEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 3788999999754 355554 4667777642 1321 1121 2233443 3333333333 235789999999
Q ss_pred hhhHHHHHHHHHh---CCCCceEeccCCcchhhHHHHHHh--cCCCCcEEEEcCCCCCCccee
Q 002707 340 VENSEYLSDLLKQ---QGIPHNVLNARPKYAAREAETVAQ--AGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 340 I~~SE~ls~~L~~---~gi~h~vLNA~~k~~~~EA~IIa~--AG~~G~VTIATNMAGRGTDIk 397 (890)
.++.+.+.+.|.+ .++..-.|++.-...+++ .++.. .| .-.|.||||.|.||.||.
T Consensus 222 ~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~-~~~~~~~~G-~rkVlvATnIAErsLtIp 282 (812)
T PRK11664 222 VGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQ-KAILPAPAG-RRKVVLATNIAETSLTIE 282 (812)
T ss_pred HHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHH-HHhccccCC-CeEEEEecchHHhccccc
Confidence 9999999999987 466666677642122232 34442 34 347999999999999994
No 52
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.16 E-value=9e-06 Score=100.44 Aligned_cols=121 Identities=18% Similarity=0.242 Sum_probs=75.1
Q ss_pred ccccccCCchhHHHHHHhhh-CCCeEEcCCCC-CcccccCCCcEEe--ChhHHHH-HHHHHHHHhh-hCCCcEEEEecch
Q 002707 267 KLSGMTGTAKTEEKEFLKMF-QMPVIEVPTNL-PNIRVDLPIQSFA--TARGKWE-YARQEVESMF-RLGRPVLVGSTSV 340 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~iY-~l~vv~IPt~k-p~~R~d~pd~i~~--t~~~k~~-AIi~ei~~~~-~~grPVLIgt~sI 340 (890)
++..||+|...+. |.+.+ +..++.+|... |+ ...|. ...+++. ++...+.... ..+-.|||++++.
T Consensus 148 qlIlmSATl~~~~--l~~~l~~~~vI~~~gr~~pV------e~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~ 219 (819)
T TIGR01970 148 KILAMSATLDGER--LSSLLPDAPVVESEGRSFPV------EIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQ 219 (819)
T ss_pred eEEEEeCCCCHHH--HHHHcCCCcEEEecCcceee------eeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCH
Confidence 7889999997643 44444 46777776422 22 12232 2233432 2222333222 2345699999999
Q ss_pred hhHHHHHHHHHh---CCCCceEeccCCcchhhHHHHHHhc--CCCCcEEEEcCCCCCCccee
Q 002707 341 ENSEYLSDLLKQ---QGIPHNVLNARPKYAAREAETVAQA--GRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 341 ~~SE~ls~~L~~---~gi~h~vLNA~~k~~~~EA~IIa~A--G~~G~VTIATNMAGRGTDIk 397 (890)
++.+.+.+.|.+ .++..-.|++.-...+++ .++... | .-.|.||||.|.||.||.
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~-~~~~~~~~G-~rkVlVATnIAErgItIp 279 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQD-RAIKPDPQG-RRKVVLATNIAETSLTIE 279 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHH-HHHhhcccC-CeEEEEecchHhhccccc
Confidence 999999999987 366666677642222332 455533 3 347999999999999994
No 53
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.06 E-value=3.9e-05 Score=94.36 Aligned_cols=129 Identities=14% Similarity=0.176 Sum_probs=78.5
Q ss_pred ccccccCCchhHHHHHHhhhCCCeEEcCCCCCcccccCCCcEEe-ChhHHHHHHHHHHHHh-hhCCCcEEEEecchhhHH
Q 002707 267 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFA-TARGKWEYARQEVESM-FRLGRPVLVGSTSVENSE 344 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~-t~~~k~~AIi~ei~~~-~~~grPVLIgt~sI~~SE 344 (890)
++..||.|..++-.++.+.+.-+-..++-.+...-......++. +...|....+..+... ...|..|||+|+|++.++
T Consensus 207 QtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq 286 (844)
T TIGR02621 207 RVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVR 286 (844)
T ss_pred eEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHH
Confidence 57889999976555555544322222222221111111112333 3344555555444332 356789999999999999
Q ss_pred HHHHHHHhCCCCceEeccCCcchhhHH----HHHHhc------CC-----C-CcEEEEcCCCCCCccee
Q 002707 345 YLSDLLKQQGIPHNVLNARPKYAAREA----ETVAQA------GR-----K-YAITISTNMAGRGTDII 397 (890)
Q Consensus 345 ~ls~~L~~~gi~h~vLNA~~k~~~~EA----~IIa~A------G~-----~-G~VTIATNMAGRGTDIk 397 (890)
.+++.|++.++ ..|+++-.+.+++. .++++- |. . ..|-|||+.|.||.||.
T Consensus 287 ~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId 353 (844)
T TIGR02621 287 KVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNIS 353 (844)
T ss_pred HHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCC
Confidence 99999999987 78887533344441 334422 32 1 25899999999999995
No 54
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.01 E-value=4e-05 Score=89.57 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHhh-hCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcC
Q 002707 312 ARGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTN 388 (890)
Q Consensus 312 ~~~k~~AIi~ei~~~~-~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATN 388 (890)
..+|...+.+.+...+ ..+-.|||+|.+...++.|+..|...+.+...|++...+.+++. +++ +.| .-.|-||||
T Consensus 322 ~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~-~L~~FreG-~~~vLVATd 399 (519)
T KOG0331|consen 322 ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDW-VLKGFREG-KSPVLVATD 399 (519)
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHH-HHHhcccC-CcceEEEcc
Confidence 5566555554444444 45668999999999999999999999999999998533334432 333 355 457999999
Q ss_pred CCCCCccee
Q 002707 389 MAGRGTDII 397 (890)
Q Consensus 389 MAGRGTDIk 397 (890)
+|+||-||+
T Consensus 400 VAaRGLDi~ 408 (519)
T KOG0331|consen 400 VAARGLDVP 408 (519)
T ss_pred cccccCCCc
Confidence 999999995
No 55
>PRK09401 reverse gyrase; Reviewed
Probab=98.00 E-value=0.0003 Score=90.27 Aligned_cols=102 Identities=24% Similarity=0.306 Sum_probs=70.8
Q ss_pred CCcchhHHHHHHhhcCC--eeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccC
Q 002707 2 RHFDVQIIGGAVLHDGS--IAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 56 (890)
Q Consensus 2 r~ydVQliGg~~L~~G~--IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~ 56 (890)
.|+++|-...-.+..|+ ++-+.| ||+...-||..=++.+..+...+|+.+.....
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g 159 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYY 159 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEc
Confidence 46788887776677775 566666 78888899998888899998888988766543
Q ss_pred C--CCHHHHhhc---c---CCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeee
Q 002707 57 G--MIPEERRSN---Y---RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 115 (890)
Q Consensus 57 ~--~~~~~rr~a---Y---~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiL 115 (890)
. ++.+++.+. . .+||+.||..- |.+++. ..-.. .++++||||||+||
T Consensus 160 ~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~r-----L~~~~~----~l~~~---~~~~lVvDEaD~~L 214 (1176)
T PRK09401 160 HSSLKKKEKEEFLERLKEGDFDILVTTSQF-----LSKNFD----ELPKK---KFDFVFVDDVDAVL 214 (1176)
T ss_pred cCCcchhHHHHHHHHHhcCCCCEEEECHHH-----HHHHHH----hcccc---ccCEEEEEChHHhh
Confidence 3 223333322 1 37999999853 334432 11112 59999999999998
No 56
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=8.7e-05 Score=87.62 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=97.5
Q ss_pred eEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhh--CCCe
Q 002707 213 KALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF--QMPV 290 (890)
Q Consensus 213 ~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY--~l~v 290 (890)
+.+++||..- |-++-|.+.+...+..=.. .. ...-.|.|....-.++.+.| +-..
T Consensus 176 ~~lVlDEADr--mLd~Gf~~~i~~I~~~~p~-----~~----------------qtllfSAT~~~~i~~l~~~~l~~p~~ 232 (513)
T COG0513 176 ETLVLDEADR--MLDMGFIDDIEKILKALPP-----DR----------------QTLLFSATMPDDIRELARRYLNDPVE 232 (513)
T ss_pred CEEEeccHhh--hhcCCCHHHHHHHHHhCCc-----cc----------------EEEEEecCCCHHHHHHHHHHccCCcE
Confidence 4566776432 2333677777666654322 22 34445677766556666554 3333
Q ss_pred EEcC-CCC--CcccccCCCcEEeChh-HHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcc
Q 002707 291 IEVP-TNL--PNIRVDLPIQSFATAR-GKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 366 (890)
Q Consensus 291 v~IP-t~k--p~~R~d~pd~i~~t~~-~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~ 366 (890)
+.|. ... .....++ ..++.... +|+..+..-+ .....+ .++|+|++...++.|+..|...|++...|++.-.+
T Consensus 233 i~v~~~~~~~~~~~i~q-~~~~v~~~~~k~~~L~~ll-~~~~~~-~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q 309 (513)
T COG0513 233 IEVSVEKLERTLKKIKQ-FYLEVESEEEKLELLLKLL-KDEDEG-RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQ 309 (513)
T ss_pred EEEccccccccccCceE-EEEEeCCHHHHHHHHHHHH-hcCCCC-eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCH
Confidence 4554 222 1112222 22333333 3666655444 333333 49999999999999999999999999999996445
Q ss_pred hhhHHHHHH-hcCCCCcEEEEcCCCCCCccee
Q 002707 367 AAREAETVA-QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 367 ~~~EA~IIa-~AG~~G~VTIATNMAGRGTDIk 397 (890)
.+++..+-. ..| .-.|.|||+.|+||-||.
T Consensus 310 ~~R~~~l~~F~~g-~~~vLVaTDvaaRGiDi~ 340 (513)
T COG0513 310 EERDRALEKFKDG-ELRVLVATDVAARGLDIP 340 (513)
T ss_pred HHHHHHHHHHHcC-CCCEEEEechhhccCCcc
Confidence 555544333 344 558999999999999995
No 57
>PRK01172 ski2-like helicase; Provisional
Probab=97.95 E-value=4.4e-05 Score=92.67 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=74.1
Q ss_pred CccccccCCchhHHHHHHhhhCCCeEEcCCCCCcccc---cCCCcEEeChhHHHH-HHHHHHHHhhhCCCcEEEEecchh
Q 002707 266 PKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRV---DLPIQSFATARGKWE-YARQEVESMFRLGRPVLVGSTSVE 341 (890)
Q Consensus 266 ~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~kp~~R~---d~pd~i~~t~~~k~~-AIi~ei~~~~~~grPVLIgt~sI~ 341 (890)
.++.|||+|... ..+|.+-.+..++. +..+|.... .....++.....+-. .+..-+.+....|.+|||+|+|.+
T Consensus 170 ~riI~lSATl~n-~~~la~wl~~~~~~-~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~ 247 (674)
T PRK01172 170 ARILALSATVSN-ANELAQWLNASLIK-SNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRK 247 (674)
T ss_pred CcEEEEeCccCC-HHHHHHHhCCCccC-CCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHH
Confidence 478899999965 35566655655432 333333211 111222222111111 133334444578999999999999
Q ss_pred hHHHHHHHHHhCCCC-------------------------ceEeccCCcchhhHHHHHHh---cCCCCcEEEEcCCCCCC
Q 002707 342 NSEYLSDLLKQQGIP-------------------------HNVLNARPKYAAREAETVAQ---AGRKYAITISTNMAGRG 393 (890)
Q Consensus 342 ~SE~ls~~L~~~gi~-------------------------h~vLNA~~k~~~~EA~IIa~---AG~~G~VTIATNMAGRG 393 (890)
.++.++..|.+..-. ...+++. -..+|.++|-+ .| .-.|.|||+.+++|
T Consensus 248 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hag--l~~~eR~~ve~~f~~g-~i~VLvaT~~la~G 324 (674)
T PRK01172 248 NAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAG--LSNEQRRFIEEMFRNR-YIKVIVATPTLAAG 324 (674)
T ss_pred HHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCC--CCHHHHHHHHHHHHcC-CCeEEEecchhhcc
Confidence 999999988764110 1223442 22334445443 34 45899999999999
Q ss_pred ccee
Q 002707 394 TDII 397 (890)
Q Consensus 394 TDIk 397 (890)
.||.
T Consensus 325 vnip 328 (674)
T PRK01172 325 VNLP 328 (674)
T ss_pred CCCc
Confidence 9984
No 58
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.94 E-value=5.1e-05 Score=96.79 Aligned_cols=122 Identities=18% Similarity=0.211 Sum_probs=80.7
Q ss_pred CccccccCCchhHHHHHHhhh-CCCeEEcCCCC-CcccccCCCcEEeC--------hhHHHHHHHHHHHHhh-hCCCcEE
Q 002707 266 PKLSGMTGTAKTEEKEFLKMF-QMPVIEVPTNL-PNIRVDLPIQSFAT--------ARGKWEYARQEVESMF-RLGRPVL 334 (890)
Q Consensus 266 ~kL~GmTGTa~te~~Ef~~iY-~l~vv~IPt~k-p~~R~d~pd~i~~t--------~~~k~~AIi~ei~~~~-~~grPVL 334 (890)
.++..||+|... +.|.+.| +..++.||... |+. ..|.. +..+..++++.+...+ .....||
T Consensus 219 lKvILmSATid~--e~fs~~F~~apvI~V~Gr~~pVe------i~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdIL 290 (1294)
T PRK11131 219 LKVIITSATIDP--ERFSRHFNNAPIIEVSGRTYPVE------VRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDIL 290 (1294)
T ss_pred ceEEEeeCCCCH--HHHHHHcCCCCEEEEcCccccce------EEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEE
Confidence 378899999964 3577666 46778887532 221 11211 2345566666655443 3446799
Q ss_pred EEecchhhHHHHHHHHHhCCCCce---EeccCCcchhhHHHHHHhcCCCCcEEEEcCCCCCCccee
Q 002707 335 VGSTSVENSEYLSDLLKQQGIPHN---VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 335 Igt~sI~~SE~ls~~L~~~gi~h~---vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMAGRGTDIk 397 (890)
|+|++.++.+.+++.|.+.++++- .|++.-...++ ..+....| .-.|.||||.|.||.||.
T Consensus 291 VFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ-~~Vf~~~g-~rkIIVATNIAEtSITIp 354 (1294)
T PRK11131 291 IFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQ-NRVFQSHS-GRRIVLATNVAETSLTVP 354 (1294)
T ss_pred EEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHH-HHHhcccC-CeeEEEeccHHhhccccC
Confidence 999999999999999999988742 35553111222 24555555 358999999999999994
No 59
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=97.93 E-value=0.00034 Score=87.82 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHH-HhCCCCceEeccCCcchhhHHHHHH-hcCC-CCcEEEEcCC
Q 002707 313 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLL-KQQGIPHNVLNARPKYAAREAETVA-QAGR-KYAITISTNM 389 (890)
Q Consensus 313 ~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L-~~~gi~h~vLNA~~k~~~~EA~IIa-~AG~-~G~VTIATNM 389 (890)
+.|..++++-+... .+..|||+|.+.+.+..|++.| ...|++..++++.....+++..+-. +.+. ...|-|||..
T Consensus 478 d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 478 DPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred CHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 46777777655443 3789999999999999999999 5679999999986333445433322 2232 4679999999
Q ss_pred CCCCccee
Q 002707 390 AGRGTDII 397 (890)
Q Consensus 390 AGRGTDIk 397 (890)
||||.|+.
T Consensus 556 gseGlNlq 563 (956)
T PRK04914 556 GSEGRNFQ 563 (956)
T ss_pred hccCCCcc
Confidence 99999984
No 60
>PRK02362 ski2-like helicase; Provisional
Probab=97.88 E-value=0.00038 Score=85.57 Aligned_cols=74 Identities=18% Similarity=0.075 Sum_probs=49.1
Q ss_pred HHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCC------------------------------------CceEeccC
Q 002707 320 RQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGI------------------------------------PHNVLNAR 363 (890)
Q Consensus 320 i~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi------------------------------------~h~vLNA~ 363 (890)
+..+...+..|.||||+|.|...++.++..|.+..- .....+|.
T Consensus 233 ~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHag 312 (737)
T PRK02362 233 LNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAG 312 (737)
T ss_pred HHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCC
Confidence 344455566899999999999999999888865311 11223442
Q ss_pred CcchhhHHHHHHh---cCCCCcEEEEcCCCCCCcce
Q 002707 364 PKYAAREAETVAQ---AGRKYAITISTNMAGRGTDI 396 (890)
Q Consensus 364 ~k~~~~EA~IIa~---AG~~G~VTIATNMAGRGTDI 396 (890)
-...|.++|-+ .| .=.|.|||+.++||.|+
T Consensus 313 --l~~~eR~~ve~~Fr~G-~i~VLvaT~tla~Gvnl 345 (737)
T PRK02362 313 --LSREHRELVEDAFRDR-LIKVISSTPTLAAGLNL 345 (737)
T ss_pred --CCHHHHHHHHHHHHcC-CCeEEEechhhhhhcCC
Confidence 12234444443 34 33789999999999997
No 61
>PRK00254 ski2-like helicase; Provisional
Probab=97.88 E-value=0.0001 Score=90.33 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=73.3
Q ss_pred CccccccCCchhHHHHHHhhhCCCeEEcCCCCCcccc---cCCCcEEeChh--HHH-HHHHHHHHHhhhCCCcEEEEecc
Q 002707 266 PKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRV---DLPIQSFATAR--GKW-EYARQEVESMFRLGRPVLVGSTS 339 (890)
Q Consensus 266 ~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~kp~~R~---d~pd~i~~t~~--~k~-~AIi~ei~~~~~~grPVLIgt~s 339 (890)
.++.|||+|.+. ..++.+..+... ..|..+|..-. -....++.... .+. .+...-+.+....|.+|||+|.|
T Consensus 170 ~qiI~lSATl~n-~~~la~wl~~~~-~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~s 247 (720)
T PRK00254 170 AQILGLSATVGN-AEELAEWLNAEL-VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKKGKGALVFVNT 247 (720)
T ss_pred CcEEEEEccCCC-HHHHHHHhCCcc-ccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHhCCCEEEEEcC
Confidence 479999999975 355666556543 34555654321 11111221111 111 23333444555679999999999
Q ss_pred hhhHHHHHHHHHhCC---------------------------------CCceEeccCCcchhhHHHHHH---hcCCCCcE
Q 002707 340 VENSEYLSDLLKQQG---------------------------------IPHNVLNARPKYAAREAETVA---QAGRKYAI 383 (890)
Q Consensus 340 I~~SE~ls~~L~~~g---------------------------------i~h~vLNA~~k~~~~EA~IIa---~AG~~G~V 383 (890)
...++.++..|.+.. ......++. -...|..+|- +.|. =.|
T Consensus 248 r~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag--l~~~eR~~ve~~F~~G~-i~V 324 (720)
T PRK00254 248 RRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG--LGRTERVLIEDAFREGL-IKV 324 (720)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC--CCHHHHHHHHHHHHCCC-CeE
Confidence 999988876664320 012234443 2223444443 4563 379
Q ss_pred EEEcCCCCCCcce
Q 002707 384 TISTNMAGRGTDI 396 (890)
Q Consensus 384 TIATNMAGRGTDI 396 (890)
.|||+.+++|.||
T Consensus 325 LvaT~tLa~Gvni 337 (720)
T PRK00254 325 ITATPTLSAGINL 337 (720)
T ss_pred EEeCcHHhhhcCC
Confidence 9999999999997
No 62
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.83 E-value=0.00012 Score=93.76 Aligned_cols=126 Identities=18% Similarity=0.213 Sum_probs=78.8
Q ss_pred ccccccCCchhHHHHHHhhhC-CCeEEcCCCC-CcccccCCCcEEeC---hhHHHHHHHHHHHHhhh-CCCcEEEEecch
Q 002707 267 KLSGMTGTAKTEEKEFLKMFQ-MPVIEVPTNL-PNIRVDLPIQSFAT---ARGKWEYARQEVESMFR-LGRPVLVGSTSV 340 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~iY~-l~vv~IPt~k-p~~R~d~pd~i~~t---~~~k~~AIi~ei~~~~~-~grPVLIgt~sI 340 (890)
|+..||+|... +.|.+.|+ ..++.||... |+.-.-.|.. ..+ ...+..++++.+.+.+. ....|||++++.
T Consensus 213 KlIlmSATld~--~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~-~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 213 KIIITSATIDP--ERFSRHFNNAPIIEVSGRTYPVEVRYRPLV-EEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred eEEEEeCCcCH--HHHHHHhcCCCEEEECCCcccceeEEeccc-ccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 78999999964 45777774 6788887532 3311101100 001 12355666666655443 346799999999
Q ss_pred hhHHHHHHHHHhCCCCc---eEeccCCcchhhHHHHHHhcCCCCcEEEEcCCCCCCccee
Q 002707 341 ENSEYLSDLLKQQGIPH---NVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 341 ~~SE~ls~~L~~~gi~h---~vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMAGRGTDIk 397 (890)
.+.+.+.+.|.+.+.++ -.|++.-...++ ..++...+ ...|.||||.|.||.||-
T Consensus 290 ~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ-~~vf~~~~-~rkIVLATNIAEtSLTIp 347 (1283)
T TIGR01967 290 REIRDAAEILRKRNLRHTEILPLYARLSNKEQ-QRVFQPHS-GRRIVLATNVAETSLTVP 347 (1283)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHH-HHHhCCCC-CceEEEeccHHHhccccC
Confidence 99999999999886642 235553111222 23554433 358999999999999983
No 63
>PRK09694 helicase Cas3; Provisional
Probab=97.83 E-value=0.00015 Score=90.34 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCC---CCceEeccCCcch---hhHHHHHHhc---CCC--CcEEE
Q 002707 317 EYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQG---IPHNVLNARPKYA---AREAETVAQA---GRK--YAITI 385 (890)
Q Consensus 317 ~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~g---i~h~vLNA~~k~~---~~EA~IIa~A---G~~--G~VTI 385 (890)
.++++.+.+..+.|.+|||+|++|+.++.+++.|++.+ .+..+++++-... ..|.++++.- |.. +.|-|
T Consensus 547 ~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 547 LTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 46777777777899999999999999999999999875 5677888852122 2355677644 432 67999
Q ss_pred EcCCCCCCccee
Q 002707 386 STNMAGRGTDII 397 (890)
Q Consensus 386 ATNMAGRGTDIk 397 (890)
||+.+.||.||-
T Consensus 627 aTQViE~GLDId 638 (878)
T PRK09694 627 ATQVVEQSLDLD 638 (878)
T ss_pred ECcchhheeecC
Confidence 999999999994
No 64
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.82 E-value=0.00097 Score=85.71 Aligned_cols=101 Identities=20% Similarity=0.274 Sum_probs=75.3
Q ss_pred CCcchhHHHHHHhhcCC--eeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccc---c
Q 002707 2 RHFDVQIIGGAVLHDGS--IAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVG---L 53 (890)
Q Consensus 2 r~ydVQliGg~~L~~G~--IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg---~ 53 (890)
.|+.+|-...-.+..|+ ++-+.| |++....||..=++.+..+...+|+.+. +
T Consensus 78 ~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~ 157 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGA 157 (1171)
T ss_pred CCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeee
Confidence 57889988887777776 566666 7889999999999999999999998743 4
Q ss_pred ccCCCCHHHHhhcc------CCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeee
Q 002707 54 IQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 115 (890)
Q Consensus 54 i~~~~~~~~rr~aY------~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiL 115 (890)
..++++..++.... .+||+.||.. +|.+++.. ... .+.++||||||+||
T Consensus 158 ~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~-----rL~~~~~~-----l~~---~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 158 YHSRLPTKEKKEFMERIENGDFDILITTTM-----FLSKNYDE-----LGP---KFDFIFVDDVDALL 212 (1171)
T ss_pred ecCCCCHHHHHHHHHHHhcCCCCEEEECHH-----HHHHHHHH-----hcC---CCCEEEEeChHhhh
Confidence 56677776654321 2699999985 34444321 111 68999999999997
No 65
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=97.64 E-value=0.00015 Score=63.20 Aligned_cols=48 Identities=23% Similarity=0.495 Sum_probs=35.1
Q ss_pred HHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCCCCCCccee
Q 002707 348 DLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 348 ~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNMAGRGTDIk 397 (890)
+.|+..|++...+++......++ +++. +.| .+.|.|||+++|+|.|+.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~-~~~~~f~~~-~~~vli~t~~~~~Gid~~ 50 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQ-EILKKFNSG-EIRVLIATDILGEGIDLP 50 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHH-HHHHHHHTT-SSSEEEESCGGTTSSTST
T ss_pred CChHHCCCcEEEEECCCCHHHHH-HHHHHhhcc-CceEEEeecccccccccc
Confidence 46889999999999853333332 3443 445 459999999999999994
No 66
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.001 Score=77.23 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCce-Eecc---C----CcchhhHHHHHH--hcCCCC
Q 002707 312 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN-VLNA---R----PKYAAREAETVA--QAGRKY 381 (890)
Q Consensus 312 ~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~-vLNA---~----~k~~~~EA~IIa--~AG~~G 381 (890)
+-++...++.+..+.+ .+.-|+|+|+.-+.||.|.+.|.+.|+... .+-+ + ..+-.+-.+||+ ++| ..
T Consensus 349 Kl~~l~eilke~~~k~-~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G-e~ 426 (542)
T COG1111 349 KLEKLREILKEQLEKN-GDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG-EY 426 (542)
T ss_pred cHHHHHHHHHHHHhcC-CCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcC-Cc
Confidence 3455566666665544 558899999999999999999999987653 2221 1 011122347887 566 67
Q ss_pred cEEEEcCCCCCCcce
Q 002707 382 AITISTNMAGRGTDI 396 (890)
Q Consensus 382 ~VTIATNMAGRGTDI 396 (890)
.|-|||+.|=-|-||
T Consensus 427 nVLVaTSVgEEGLDI 441 (542)
T COG1111 427 NVLVATSVGEEGLDI 441 (542)
T ss_pred eEEEEcccccccCCC
Confidence 899999999999999
No 67
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=97.54 E-value=0.00026 Score=60.63 Aligned_cols=51 Identities=33% Similarity=0.484 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCCCCCCccee
Q 002707 345 YLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 345 ~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNMAGRGTDIk 397 (890)
.+++.|.+.+++..++++.....+++ ++++ +.| ...|.|+|+++|+|.|+.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~-~~~~~f~~~-~~~vli~t~~~~~Gi~~~ 54 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEERE-EILEKFNNG-KIKVLVATDVAERGLDLP 54 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHH-HHHHHHHcC-CCeEEEECChhhCCcChh
Confidence 57788888899988888742222232 3333 334 459999999999999984
No 68
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.0026 Score=75.94 Aligned_cols=158 Identities=17% Similarity=0.249 Sum_probs=107.6
Q ss_pred EEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhH-HHHHHhhhCCC---
Q 002707 214 ALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP--- 289 (890)
Q Consensus 214 I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te-~~Ef~~iY~l~--- 289 (890)
.+.|||--=.-+=|--|.-..-+.-..+++++ . ..+..+|+||-.. .....+..++.
T Consensus 134 l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~------------------~p~~AlTATA~~~v~~DI~~~L~l~~~~ 194 (590)
T COG0514 134 LVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-N------------------PPVLALTATATPRVRDDIREQLGLQDAN 194 (590)
T ss_pred eEEechHHHHhhcCCccCHhHHHHHHHHhhCC-C------------------CCEEEEeCCCChHHHHHHHHHhcCCCcc
Confidence 35567755555555556666667766666665 0 2466789999754 45566666553
Q ss_pred eEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhh
Q 002707 290 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 369 (890)
Q Consensus 290 vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~ 369 (890)
++..-.++|.++...-. ..+...+..-|.+ ..+..++|-+|.|.|-..+|.+++.|...|+.....+|. -...
T Consensus 195 ~~~~sfdRpNi~~~v~~--~~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaG--l~~~ 267 (590)
T COG0514 195 IFRGSFDRPNLALKVVE--KGEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAG--LSNE 267 (590)
T ss_pred eEEecCCCchhhhhhhh--cccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCC--CCHH
Confidence 56667888987764322 1133444443332 356789999999999999999999999999988777775 2234
Q ss_pred HHHHHHhcC--CCCcEEEEcCCCCCCccee
Q 002707 370 EAETVAQAG--RKYAITISTNMAGRGTDII 397 (890)
Q Consensus 370 EA~IIa~AG--~~G~VTIATNMAGRGTDIk 397 (890)
|.+.+-++= -...|.|||+-.|=|.|-.
T Consensus 268 eR~~~q~~f~~~~~~iiVAT~AFGMGIdKp 297 (590)
T COG0514 268 ERERVQQAFLNDEIKVMVATNAFGMGIDKP 297 (590)
T ss_pred HHHHHHHHHhcCCCcEEEEeccccCccCCC
Confidence 455555442 2568999999999999973
No 69
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.46 E-value=0.00096 Score=75.22 Aligned_cols=128 Identities=19% Similarity=0.205 Sum_probs=83.0
Q ss_pred ccccccCCchhHHHHHHh-hhCCCeEEcCCCCCccc-ccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHH
Q 002707 267 KLSGMTGTAKTEEKEFLK-MFQMPVIEVPTNLPNIR-VDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSE 344 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~-iY~l~vv~IPt~kp~~R-~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE 344 (890)
+.+-.|+|.-+...++.. .-.-.|-+.-+++-+.- .-....+|.....|-..++.-+.+ ..|.|++|+|.+-..+.
T Consensus 237 qt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e--~~g~s~iVF~~t~~tt~ 314 (476)
T KOG0330|consen 237 QTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNE--LAGNSVIVFCNTCNTTR 314 (476)
T ss_pred eEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHh--hcCCcEEEEEeccchHH
Confidence 556667777666666653 22222322222332211 112334565656666677755553 47899999999999999
Q ss_pred HHHHHHHhCCCCceEeccCCcchhhHHHHHH-hcCCCCcEEEEcCCCCCCccee
Q 002707 345 YLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 345 ~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa-~AG~~G~VTIATNMAGRGTDIk 397 (890)
.+|-+|...|+.|--|++.=.+..+....-. +|| .-.|-+||..|.||-||-
T Consensus 315 ~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~-~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 315 FLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG-ARSILVCTDVASRGLDIP 367 (476)
T ss_pred HHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc-CCcEEEecchhcccCCCC
Confidence 9999999999999888873111222222222 677 458999999999999994
No 70
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.44 E-value=0.0014 Score=76.95 Aligned_cols=128 Identities=23% Similarity=0.264 Sum_probs=96.2
Q ss_pred ccccccCCchhHHHHHHhhhCCCeEEcCC---CCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhH
Q 002707 267 KLSGMTGTAKTEEKEFLKMFQMPVIEVPT---NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENS 343 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~iY~l~vv~IPt---~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~S 343 (890)
+++-.+.|...+-+|..+.--.+.+.||- |--.-++++..+.-.++..|+-|+.+-|... -.=||||+-.|++.+
T Consensus 323 ~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRa 400 (593)
T KOG0344|consen 323 RVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERA 400 (593)
T ss_pred hhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHH
Confidence 56667788888888888766555554442 2223467777666678899999988777665 568999999999999
Q ss_pred HHHHHHH-HhCCCCceEeccCCcchhhHHHHHH-hcCCCCcEEEEcCCCCCCccee
Q 002707 344 EYLSDLL-KQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 344 E~ls~~L-~~~gi~h~vLNA~~k~~~~EA~IIa-~AG~~G~VTIATNMAGRGTDIk 397 (890)
..|...| .-.+|...++++......+|..+-+ ++| .=.|-|||+..|||.|++
T Consensus 401 k~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g-~IwvLicTdll~RGiDf~ 455 (593)
T KOG0344|consen 401 KQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG-KIWVLICTDLLARGIDFK 455 (593)
T ss_pred HHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc-CeeEEEehhhhhcccccc
Confidence 9999999 7889999999995333344433333 455 458999999999999997
No 71
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=97.39 E-value=0.00091 Score=87.00 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCC------------------------------C---ceEecc
Q 002707 316 WEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGI------------------------------P---HNVLNA 362 (890)
Q Consensus 316 ~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi------------------------------~---h~vLNA 362 (890)
|..+...+......++++||+|+|-..+|.++..|.+.+- + ....++
T Consensus 230 ~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHG 309 (1490)
T PRK09751 230 WPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHG 309 (1490)
T ss_pred hHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccc
Confidence 4444445555566789999999999999999999976420 0 112222
Q ss_pred CCcchhhHHHHHH---hcCCCCcEEEEcCCCCCCccee
Q 002707 363 RPKYAAREAETVA---QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 363 ~~k~~~~EA~IIa---~AG~~G~VTIATNMAGRGTDIk 397 (890)
. -..++-..|- +.|.- .|.|||+.+.||.||.
T Consensus 310 s--LSkeeR~~IE~~fK~G~L-rvLVATssLELGIDIg 344 (1490)
T PRK09751 310 S--VSKEQRAITEQALKSGEL-RCVVATSSLELGIDMG 344 (1490)
T ss_pred c--CCHHHHHHHHHHHHhCCc-eEEEeCcHHHccCCcc
Confidence 1 1112222232 55754 7999999999999983
No 72
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.31 E-value=0.0021 Score=72.76 Aligned_cols=129 Identities=18% Similarity=0.132 Sum_probs=86.9
Q ss_pred ccccccCCch-hHHHHHHhhhCC-CeE-EcCCCCCcccc-cCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhh
Q 002707 267 KLSGMTGTAK-TEEKEFLKMFQM-PVI-EVPTNLPNIRV-DLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVEN 342 (890)
Q Consensus 267 kL~GmTGTa~-te~~Ef~~iY~l-~vv-~IPt~kp~~R~-d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~ 342 (890)
+..-||.-.. .....|...|=- .++ .+-+---.... -....+..|+.+|| +++....+.+...--|+|+|.+--.
T Consensus 399 RqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~~ms~ndKvIiFv~~K~~ 477 (629)
T KOG0336|consen 399 RQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVANMSSNDKVIIFVSRKVM 477 (629)
T ss_pred ceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHHhcCCCceEEEEEechhh
Confidence 5556665444 344566666622 222 22221111111 11122445677777 6777777788888999999999999
Q ss_pred HHHHHHHHHhCCCCceEeccCCcchhhHHHHHH-hcCCCCcEEEEcCCCCCCccee
Q 002707 343 SEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 343 SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa-~AG~~G~VTIATNMAGRGTDIk 397 (890)
+..||.-|.-.||..+-|++...+..+|..+-. +.| .=.|-|||.+|.||-|+.
T Consensus 478 AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG-~vrILvaTDlaSRGlDv~ 532 (629)
T KOG0336|consen 478 ADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSG-EVRILVATDLASRGLDVP 532 (629)
T ss_pred hhhccchhhhcccchhhccCChhhhhHHHHHHhhhcC-ceEEEEEechhhcCCCch
Confidence 999999999999999999987666677765544 444 336789999999999993
No 73
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.0019 Score=79.01 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=87.6
Q ss_pred CCccccCCeeEEEeechhHHhhc--CccccccCCchhH---HHHHHhhhCCCeEEcCCC-------C-Cc----cccc--
Q 002707 243 GLKIQADSVVVAQITYQSLFKLY--PKLSGMTGTAKTE---EKEFLKMFQMPVIEVPTN-------L-PN----IRVD-- 303 (890)
Q Consensus 243 gv~It~e~~t~a~IT~q~~Fr~Y--~kL~GmTGTa~te---~~Ef~~iY~l~vv~IPt~-------k-p~----~R~d-- 303 (890)
|+-|-+|--.+..-+|...+..+ ....|+|||..-+ ..++....|-.+..+|.- . |. .+..
T Consensus 377 gLII~DEvH~lpA~~fr~il~~l~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t 456 (732)
T TIGR00603 377 GLILLDEVHVVPAAMFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMT 456 (732)
T ss_pred CEEEEEccccccHHHHHHHHHhcCcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCC
Confidence 56666666666555566666543 3689999999632 122333333333222210 0 00 0000
Q ss_pred -------------CCCcEEeChhHHHHHHHHHHHHhh-hCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhh
Q 002707 304 -------------LPIQSFATARGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 369 (890)
Q Consensus 304 -------------~pd~i~~t~~~k~~AIi~ei~~~~-~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~ 369 (890)
....++..+..|+.++.. +.+.| ..|..+||+|.++...+.++..| |.+ ++++.....++
T Consensus 457 ~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~-Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~~--~I~G~ts~~ER 530 (732)
T TIGR00603 457 PEFYREYLRENSRKRMLLYVMNPNKFRACQF-LIRFHEQRGDKIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQQER 530 (732)
T ss_pred HHHHHHHHHhcchhhhHHhhhChHHHHHHHH-HHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CCc--eEECCCCHHHH
Confidence 111334455666666543 44445 48999999999999999999888 333 56775444455
Q ss_pred HHHHHHh--cCCCCcEEEEcCCCCCCccee
Q 002707 370 EAETVAQ--AGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 370 EA~IIa~--AG~~G~VTIATNMAGRGTDIk 397 (890)
+ .|+.+ .|..-.|.|+|+.|++|.|+-
T Consensus 531 ~-~il~~Fr~~~~i~vLv~SkVgdeGIDlP 559 (732)
T TIGR00603 531 M-QILQNFQHNPKVNTIFLSKVGDTSIDLP 559 (732)
T ss_pred H-HHHHHHHhCCCccEEEEecccccccCCC
Confidence 4 45553 444457889999999999993
No 74
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=97.18 E-value=0.0014 Score=76.40 Aligned_cols=141 Identities=26% Similarity=0.271 Sum_probs=105.6
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHhcCCCCcEEEEcCCCCCCcceecCCChhHHHHH
Q 002707 329 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKK 408 (890)
Q Consensus 329 ~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~ 408 (890)
-|| .||+|.||+....|+-+|...+|+.-.|+|.--+..+=...-.=+-.+..|-|||..|.||-||-
T Consensus 463 PGr-TlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp----------- 530 (731)
T KOG0347|consen 463 PGR-TLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIP----------- 530 (731)
T ss_pred CCc-eEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCC-----------
Confidence 344 68999999999999999999999988888831111222233344457899999999999999993
Q ss_pred HHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhh
Q 002707 409 IIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMN 488 (890)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (890)
T Consensus 531 -------------------------------------------------------------------------------- 530 (731)
T KOG0347|consen 531 -------------------------------------------------------------------------------- 530 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhccCCCCChhhHHHHHhhhhhhcccccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceE
Q 002707 489 LKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTR 568 (890)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 568 (890)
|==|||--.-+-+.-|--.+-||++|-+.-|-|.
T Consensus 531 ----------------------------------------------~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsv 564 (731)
T KOG0347|consen 531 ----------------------------------------------GVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSV 564 (731)
T ss_pred ----------------------------------------------CcceEEEeecCCccceeEecccccccccCCCeEE
Confidence 2238998888888889999999999999999999
Q ss_pred EEEecCchhhhhccCCchHHHHHHHhcCCCCCCCccchhHHHHHHHHHH
Q 002707 569 FMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQI 617 (890)
Q Consensus 569 f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~ 617 (890)
++++=++ +. ...+++..+...++-|| -|...+.+.....
T Consensus 565 ml~~P~e--~~-------~~~KL~ktL~k~~dlpi-fPv~~~~m~~lke 603 (731)
T KOG0347|consen 565 MLCGPQE--VG-------PLKKLCKTLKKKEDLPI-FPVETDIMDALKE 603 (731)
T ss_pred EEeChHH--hH-------HHHHHHHHHhhccCCCc-eeccHHHHHHHHH
Confidence 9998766 22 23466677766777777 3444444444444
No 75
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=97.10 E-value=0.0026 Score=71.58 Aligned_cols=138 Identities=18% Similarity=0.143 Sum_probs=90.9
Q ss_pred echhHHhhcCccccccCCchhHHHHHHhhhCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHh-hhCCCcEEE
Q 002707 257 TYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESM-FRLGRPVLV 335 (890)
Q Consensus 257 T~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~-~~~grPVLI 335 (890)
|..+||+--+.-.-.|+|....-.-|.+--=+.-+.| |....=--.-+++-.-+--|-.|-+-.+.+| .++.-||||
T Consensus 349 ~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtv--NVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLI 426 (610)
T KOG0341|consen 349 TIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTV--NVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLI 426 (610)
T ss_pred HHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEE--ecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEE
Confidence 4567888777888889998877666665322222222 1111100111111111112222222233344 356789999
Q ss_pred EecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH-hcCCCCcEEEEcCCCCCCccee
Q 002707 336 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 336 gt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa-~AG~~G~VTIATNMAGRGTDIk 397 (890)
+|+.-.+...+++.|.-.|+...-+++...+.++++.|-+ +|| +-.|-|||+.|..|-|+-
T Consensus 427 FaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~g-kKDVLVATDVASKGLDFp 488 (610)
T KOG0341|consen 427 FAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAG-KKDVLVATDVASKGLDFP 488 (610)
T ss_pred EeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcC-CCceEEEecchhccCCCc
Confidence 9999999999999999999998888887667777888887 788 458999999999999993
No 76
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.08 E-value=0.015 Score=67.83 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=61.7
Q ss_pred eChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEc
Q 002707 310 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITIST 387 (890)
Q Consensus 310 ~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIAT 387 (890)
.....+..++-. +...|..+.++||+|.+++.++.++..|...|+ +..+.+.....+++ +|++ +.|. =.|.+++
T Consensus 264 ~~~~~~~~~~~~-~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~-~il~~fr~g~-~~~lv~~ 339 (442)
T COG1061 264 IASERKIAAVRG-LLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEERE-AILERFRTGG-IKVLVTV 339 (442)
T ss_pred hccHHHHHHHHH-HHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHH-HHHHHHHcCC-CCEEEEe
Confidence 344455555443 434444899999999999999999999999999 88888864444444 4555 4554 6788888
Q ss_pred CCCCCCcce
Q 002707 388 NMAGRGTDI 396 (890)
Q Consensus 388 NMAGRGTDI 396 (890)
-|++=|+||
T Consensus 340 ~vl~EGvDi 348 (442)
T COG1061 340 KVLDEGVDI 348 (442)
T ss_pred eeccceecC
Confidence 999999999
No 77
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.90 E-value=0.0036 Score=72.57 Aligned_cols=92 Identities=22% Similarity=0.310 Sum_probs=73.3
Q ss_pred CCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHhcCCC-Cc
Q 002707 304 LPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRK-YA 382 (890)
Q Consensus 304 ~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~AG~~-G~ 382 (890)
..-.|+.+.+.||..++..+.+....| -|||+.+--+.+|.+++.|+-.|+.+.+|.....+.++- +++.+--++ ..
T Consensus 443 Q~V~V~~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn-~~ls~fKkk~~~ 520 (731)
T KOG0339|consen 443 QTVSVCPSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERN-EVLSKFKKKRKP 520 (731)
T ss_pred heeeeccCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHH-HHHHHHhhcCCc
Confidence 334577899999999999998887666 577777778889999999999999999999853344442 455544333 78
Q ss_pred EEEEcCCCCCCccee
Q 002707 383 ITISTNMAGRGTDII 397 (890)
Q Consensus 383 VTIATNMAGRGTDIk 397 (890)
|-|||..|-||+||.
T Consensus 521 VlvatDvaargldI~ 535 (731)
T KOG0339|consen 521 VLVATDVAARGLDIP 535 (731)
T ss_pred eEEEeeHhhcCCCcc
Confidence 999999999999996
No 78
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=96.85 E-value=0.0041 Score=76.72 Aligned_cols=131 Identities=21% Similarity=0.122 Sum_probs=85.6
Q ss_pred ccccccCCchhHHHH-HHhhhCCCeEEcCCCCCcccccCCCcEEeChhHHH-----HHHHHHHHHhhhCCCcEEEEecch
Q 002707 267 KLSGMTGTAKTEEKE-FLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKW-----EYARQEVESMFRLGRPVLVGSTSV 340 (890)
Q Consensus 267 kL~GmTGTa~te~~E-f~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~-----~AIi~ei~~~~~~grPVLIgt~sI 340 (890)
++.-||+|..+.-.+ |.+.++-...+.++...+.-.+.+...-. ....+ ......+....+.|..|||+|.||
T Consensus 372 ~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV 450 (733)
T COG1203 372 PVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRK-ERVDVEDGPQEELIELISEEVKEGKKVLVIVNTV 450 (733)
T ss_pred CEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccc-cchhhhhhhhHhhhhcchhhhccCCcEEEEEecH
Confidence 788999999986554 55666555544444332221222211111 11111 124555666678999999999999
Q ss_pred hhHHHHHHHHHhCCCCceEeccCCcc-h--hhHHHHHHh-cCCCCcEEEEcCCCCCCcceec
Q 002707 341 ENSEYLSDLLKQQGIPHNVLNARPKY-A--AREAETVAQ-AGRKYAITISTNMAGRGTDIIL 398 (890)
Q Consensus 341 ~~SE~ls~~L~~~gi~h~vLNA~~k~-~--~~EA~IIa~-AG~~G~VTIATNMAGRGTDIkL 398 (890)
..|..+...|+..+-+.-+|+.+-.. | +.|.+|.+. +...+.|.|||...==|.||-.
T Consensus 451 ~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidf 512 (733)
T COG1203 451 DRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDF 512 (733)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecccc
Confidence 99999999999998766777775221 2 234445544 6668899999999888888853
No 79
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.70 E-value=0.015 Score=67.83 Aligned_cols=114 Identities=22% Similarity=0.262 Sum_probs=81.8
Q ss_pred HHHHh-hhCC-CeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhC-CC------cEEEEecchhhHHHHHHHH
Q 002707 280 KEFLK-MFQM-PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRL-GR------PVLVGSTSVENSEYLSDLL 350 (890)
Q Consensus 280 ~Ef~~-iY~l-~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~-gr------PVLIgt~sI~~SE~ls~~L 350 (890)
..|.. -|.+ .|..|-+..++..+. .+|..+.+|-.++++........ -+ =+||++++++.+..|...|
T Consensus 281 ~~fl~~~yi~laV~rvg~~~~ni~q~---i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l 357 (482)
T KOG0335|consen 281 ADFLKDNYIFLAVGRVGSTSENITQK---ILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFL 357 (482)
T ss_pred HHHhhccceEEEEeeeccccccceeE---eeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHH
Confidence 34443 3754 466777777775554 35778888888888776544311 23 3999999999999999999
Q ss_pred HhCCCCceEeccCCcchhhHHHHHH-hcCCCCcEEEEcCCCCCCccee
Q 002707 351 KQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 351 ~~~gi~h~vLNA~~k~~~~EA~IIa-~AG~~G~VTIATNMAGRGTDIk 397 (890)
...|++..-+.....+.++|..+=. +-|.. .|-||||.|-||-||+
T Consensus 358 ~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~-pvlVaT~VaaRGlDi~ 404 (482)
T KOG0335|consen 358 SSNGYPAKSIHGDRTQIEREQALNDFRNGKA-PVLVATNVAARGLDIP 404 (482)
T ss_pred hcCCCCceeecchhhhhHHHHHHHHhhcCCc-ceEEEehhhhcCCCCC
Confidence 9999998877764334455544333 45644 5999999999999996
No 80
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=96.52 E-value=0.33 Score=57.61 Aligned_cols=232 Identities=19% Similarity=0.235 Sum_probs=145.4
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHH-HHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCc
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPE-ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPF 103 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~-~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~ 103 (890)
|||.-.-||-.=++-+..+=++-++|+|+|..+.+.+ ++-..-+++|.-||..-+ -.+|..++.- -.. .+
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRL-----LQHmde~~~f-~t~---~l 216 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRL-----LQHMDENPNF-STS---NL 216 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHH-----HHHhhhcCCC-CCC---cc
Confidence 9999999999999999999999999999999887754 566677899999999853 4566544321 223 78
Q ss_pred ceEEeccCCeeeecCCCCcccccCCCCCCCcchHHHHHHHHHhccCCCeEEeCCCCeee-ccHhhHHHHHHHhcCCCCCC
Q 002707 104 HFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVE-LTEEGIALAEMALETNDLWD 182 (890)
Q Consensus 104 ~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~~~~~~v~~l~~~~~y~vd~~~k~v~-Lte~G~~~~e~~~~~~~l~~ 182 (890)
..+|+||+|.|| |-+ .-...+.++..|-+ .++-. +..---..+..+
T Consensus 217 QmLvLDEADR~L-DMG---------------Fk~tL~~Ii~~lP~---------~RQTLLFSATqt~svkdL-------- 263 (758)
T KOG0343|consen 217 QMLVLDEADRML-DMG---------------FKKTLNAIIENLPK---------KRQTLLFSATQTKSVKDL-------- 263 (758)
T ss_pred eEEEeccHHHHH-HHh---------------HHHHHHHHHHhCCh---------hheeeeeecccchhHHHH--------
Confidence 899999999997 322 11345666666532 22221 111000001110
Q ss_pred CCCcHHHHHHHHHHHHHhcccCcceEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHH
Q 002707 183 ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLF 262 (890)
Q Consensus 183 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~F 262 (890)
| .|--+|-.||-.-
T Consensus 264 --------------a-RLsL~dP~~vsvh--------------------------------------------------- 277 (758)
T KOG0343|consen 264 --------------A-RLSLKDPVYVSVH--------------------------------------------------- 277 (758)
T ss_pred --------------H-HhhcCCCcEEEEe---------------------------------------------------
Confidence 1 1112344444221
Q ss_pred hhcCccccccCCchhHHHHHHhhhCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhh
Q 002707 263 KLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVEN 342 (890)
Q Consensus 263 r~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~ 342 (890)
-+.+++|- ..|.+.| +.+ ...+|...+..-|.... ..-.||+..|-.+
T Consensus 278 --------e~a~~atP-~~L~Q~y----~~v-----------------~l~~Ki~~L~sFI~shl--k~K~iVF~SscKq 325 (758)
T KOG0343|consen 278 --------ENAVAATP-SNLQQSY----VIV-----------------PLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQ 325 (758)
T ss_pred --------ccccccCh-hhhhheE----EEE-----------------ehhhHHHHHHHHHHhcc--ccceEEEEehhhH
Confidence 11111110 1122221 233 34677888877776643 4568999999999
Q ss_pred HHHHHHHHHhC--CCCceEeccCCcchhhHHHHHHhcCC-CCcEEEEcCCCCCCccee
Q 002707 343 SEYLSDLLKQQ--GIPHNVLNARPKYAAREAETVAQAGR-KYAITISTNMAGRGTDII 397 (890)
Q Consensus 343 SE~ls~~L~~~--gi~h~vLNA~~k~~~~EA~IIa~AG~-~G~VTIATNMAGRGTDIk 397 (890)
+..+.+.+.+. |+|.--|.++.++..+ -++-++=-+ ...|-.||..|.||-|+-
T Consensus 326 vkf~~e~F~rlrpg~~l~~L~G~~~Q~~R-~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 326 VKFLYEAFCRLRPGIPLLALHGTMSQKKR-IEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHHHHhcCCCCceeeeccchhHHHH-HHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 99999999874 8888888886333222 334443332 567999999999999993
No 81
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.30 E-value=0.02 Score=64.73 Aligned_cols=121 Identities=18% Similarity=0.261 Sum_probs=85.9
Q ss_pred ccccccCCchhHHHHHHhh--hCCCeEEcCCCCCcccccCC-C------cEEeChhHHHHHHHHHHHHhhhCCCcEEEEe
Q 002707 267 KLSGMTGTAKTEEKEFLKM--FQMPVIEVPTNLPNIRVDLP-I------QSFATARGKWEYARQEVESMFRLGRPVLVGS 337 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~i--Y~l~vv~IPt~kp~~R~d~p-d------~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt 337 (890)
.+.-.|.|--.....|... =+-.++.+- |.++. + ..-..+++|+.++++ +-....-||.| |+|
T Consensus 266 QllLFSATf~e~V~~Fa~kivpn~n~i~Lk------~eel~L~~IkQlyv~C~~~~~K~~~l~~-lyg~~tigqsi-IFc 337 (477)
T KOG0332|consen 266 QLLLFSATFVEKVAAFALKIVPNANVIILK------REELALDNIKQLYVLCACRDDKYQALVN-LYGLLTIGQSI-IFC 337 (477)
T ss_pred eEEeeechhHHHHHHHHHHhcCCCceeeee------hhhccccchhhheeeccchhhHHHHHHH-HHhhhhhhheE-EEE
Confidence 4566677776655556542 133333332 22211 1 223578999999997 77777888875 799
Q ss_pred cchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCCCCCCccee
Q 002707 338 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 338 ~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNMAGRGTDIk 397 (890)
.+-..+..|+..|.+.|-...+|.+. -..++-+.||. +-| .-.|-|+||...||.|+.
T Consensus 338 ~tk~ta~~l~~~m~~~Gh~V~~l~G~-l~~~~R~~ii~~Fr~g-~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 338 HTKATAMWLYEEMRAEGHQVSLLHGD-LTVEQRAAIIDRFREG-KEKVLITTNVCARGIDVA 397 (477)
T ss_pred eehhhHHHHHHHHHhcCceeEEeecc-chhHHHHHHHHHHhcC-cceEEEEechhhcccccc
Confidence 99999999999999999998899884 23344456776 556 568999999999999995
No 82
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=96.25 E-value=0.26 Score=57.72 Aligned_cols=161 Identities=16% Similarity=0.233 Sum_probs=101.8
Q ss_pred eEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHh-h
Q 002707 207 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK-M 285 (890)
Q Consensus 207 YiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~-i 285 (890)
++.++=+..|+||.. |+++ +-|.+++.|-+.+=- ...+|+ -.++|..++.+.+.. +
T Consensus 226 f~~r~~k~lvlDEAD-rlLd-~GF~~di~~Ii~~lp-----k~rqt~----------------LFSAT~~~kV~~l~~~~ 282 (543)
T KOG0342|consen 226 FLFRNLKCLVLDEAD-RLLD-IGFEEDVEQIIKILP-----KQRQTL----------------LFSATQPSKVKDLARGA 282 (543)
T ss_pred chhhccceeEeecch-hhhh-cccHHHHHHHHHhcc-----ccceee----------------EeeCCCcHHHHHHHHHh
Confidence 444444666777653 3332 346777777776521 333333 356777776555443 3
Q ss_pred hCCCeEE---cCCCCCcc--cccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEe
Q 002707 286 FQMPVIE---VPTNLPNI--RVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVL 360 (890)
Q Consensus 286 Y~l~vv~---IPt~kp~~--R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vL 360 (890)
-+-+-+. +..+.|.- |.+.. .|..+...++..+..-+++. .+.--|.|+|+|......++++|..-.+|+--+
T Consensus 283 L~~d~~~v~~~d~~~~~The~l~Qg-yvv~~~~~~f~ll~~~LKk~-~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~ei 360 (543)
T KOG0342|consen 283 LKRDPVFVNVDDGGERETHERLEQG-YVVAPSDSRFSLLYTFLKKN-IKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEI 360 (543)
T ss_pred hcCCceEeecCCCCCcchhhcccce-EEeccccchHHHHHHHHHHh-cCCceEEEEechhhHHHHHHHHHhhcCCchhhh
Confidence 4444333 34444332 33332 45566667777777666654 444889999999999999999999989998888
Q ss_pred ccCCcchhhHH----HHHHhcCCCCcEEEEcCCCCCCcce
Q 002707 361 NARPKYAAREA----ETVAQAGRKYAITISTNMAGRGTDI 396 (890)
Q Consensus 361 NA~~k~~~~EA----~IIa~AG~~G~VTIATNMAGRGTDI 396 (890)
+++.++..+=. -.-++ .-|-++|+-|.||-||
T Consensus 361 Hgk~~Q~kRT~~~~~F~kae----sgIL~cTDVaARGlD~ 396 (543)
T KOG0342|consen 361 HGKQKQNKRTSTFFEFCKAE----SGILVCTDVAARGLDI 396 (543)
T ss_pred hcCCcccccchHHHHHhhcc----cceEEecchhhccCCC
Confidence 88755443311 12233 3499999999999999
No 83
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.057 Score=59.27 Aligned_cols=123 Identities=13% Similarity=0.240 Sum_probs=85.6
Q ss_pred ccccccCCchhHHHHHHhhhCCCeEEcCCCCCcccccCCCc------EEeChhH-HHHHHHHHHHHhhhCCCcEEEEecc
Q 002707 267 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQ------SFATARG-KWEYARQEVESMFRLGRPVLVGSTS 339 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~------i~~t~~~-k~~AIi~ei~~~~~~grPVLIgt~s 339 (890)
...-.|+|...+-.|.-+.|-.+-+.|- ..|-..+.. |-...++ |+.++++- -....-.|. .|+|.+
T Consensus 202 Qvv~~SATlp~eilemt~kfmtdpvril----vkrdeltlEgIKqf~v~ve~EewKfdtLcdL-Yd~LtItQa-vIFcnT 275 (400)
T KOG0328|consen 202 QVVLVSATLPHEILEMTEKFMTDPVRIL----VKRDELTLEGIKQFFVAVEKEEWKFDTLCDL-YDTLTITQA-VIFCNT 275 (400)
T ss_pred eEEEEeccCcHHHHHHHHHhcCCceeEE----EecCCCchhhhhhheeeechhhhhHhHHHHH-hhhhehheE-EEEecc
Confidence 4567889998888888888877766652 234444432 2234445 55666643 333334444 589999
Q ss_pred hhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCCCCCCccee
Q 002707 340 VENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 340 I~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNMAGRGTDIk 397 (890)
-.....|++.+...+....-+++.-++.++| +|.. ++| ...|-|+|..-.||.|+.
T Consensus 276 k~kVdwLtekm~~~nftVssmHGDm~qkERd-~im~dFRsg-~SrvLitTDVwaRGiDv~ 333 (400)
T KOG0328|consen 276 KRKVDWLTEKMREANFTVSSMHGDMEQKERD-KIMNDFRSG-KSRVLITTDVWARGIDVQ 333 (400)
T ss_pred cchhhHHHHHHHhhCceeeeccCCcchhHHH-HHHHHhhcC-CceEEEEechhhccCCcc
Confidence 9999999999999988877777753344444 3555 677 568999999999999994
No 84
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.99 E-value=0.07 Score=60.14 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=61.6
Q ss_pred cEEeChhHHHHHHHHHHHHhhh-CCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH-hcCCCCcEE
Q 002707 307 QSFATARGKWEYARQEVESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAIT 384 (890)
Q Consensus 307 ~i~~t~~~k~~AIi~ei~~~~~-~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa-~AG~~G~VT 384 (890)
.|+.+.+.|-.-++.-+...-+ ....|.|++.+-.+++.||-.|+..++..--|+.--.+.++=+..-+ +++ .-.|.
T Consensus 230 yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~-~~~il 308 (442)
T KOG0340|consen 230 YILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSN-AARIL 308 (442)
T ss_pred eeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhc-CccEE
Confidence 3566666666555544433222 47889999999999999999999998876666652112233233332 344 45899
Q ss_pred EEcCCCCCCccee
Q 002707 385 ISTNMAGRGTDII 397 (890)
Q Consensus 385 IATNMAGRGTDIk 397 (890)
|||..|.||-||-
T Consensus 309 iaTDVAsRGLDIP 321 (442)
T KOG0340|consen 309 IATDVASRGLDIP 321 (442)
T ss_pred EEechhhcCCCCC
Confidence 9999999999993
No 85
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=95.91 E-value=0.073 Score=67.20 Aligned_cols=123 Identities=18% Similarity=0.225 Sum_probs=82.2
Q ss_pred ccccccCCchhH-HHHHHhhh---CCCeEEcCCCCCcccccCCCcEE-eChhHHHHHHHHHHHHhhhCCCcEEEEecchh
Q 002707 267 KLSGMTGTAKTE-EKEFLKMF---QMPVIEVPTNLPNIRVDLPIQSF-ATARGKWEYARQEVESMFRLGRPVLVGSTSVE 341 (890)
Q Consensus 267 kL~GmTGTa~te-~~Ef~~iY---~l~vv~IPt~kp~~R~d~pd~i~-~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~ 341 (890)
-+.++|.||-+. .+...+-- +..+..--+|+|...- .|- ++.......+...+.. +..++|.+|-|.+-.
T Consensus 422 P~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~y----eV~~k~~~~~~~~~~~~~~~-~~~~~s~IIYC~sr~ 496 (941)
T KOG0351|consen 422 PFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKY----EVSPKTDKDALLDILEESKL-RHPDQSGIIYCLSRK 496 (941)
T ss_pred CeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceE----EEEeccCccchHHHHHHhhh-cCCCCCeEEEeCCcc
Confidence 467899999653 33354444 4444444455555332 232 2324444566666665 458999999999999
Q ss_pred hHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH---hcCCCCcEEEEcCCCCCCccee
Q 002707 342 NSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA---QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 342 ~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa---~AG~~G~VTIATNMAGRGTDIk 397 (890)
++|.++..|...|+....++|. -..++.+=|- ..|+ =.|++||=+.|=|+|-+
T Consensus 497 ~ce~vs~~L~~~~~~a~~YHAG--l~~~~R~~Vq~~w~~~~-~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 497 ECEQVSAVLRSLGKSAAFYHAG--LPPKERETVQKAWMSDK-IRVIVATVAFGMGIDKP 552 (941)
T ss_pred hHHHHHHHHHHhchhhHhhhcC--CCHHHHHHHHHHHhcCC-CeEEEEEeeccCCCCCC
Confidence 9999999999999877777764 2233333333 3443 47999999999999974
No 86
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.74 E-value=0.08 Score=62.89 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=35.8
Q ss_pred HHHHHHHHHhC--CCCceEeccCCcchhh-HHHHHHhcCC-CCcEEEEcCCCCCCccee
Q 002707 343 SEYLSDLLKQQ--GIPHNVLNARPKYAAR-EAETVAQAGR-KYAITISTNMAGRGTDII 397 (890)
Q Consensus 343 SE~ls~~L~~~--gi~h~vLNA~~k~~~~-EA~IIa~AG~-~G~VTIATNMAGRGTDIk 397 (890)
+|.+.+.|++. +.+...+++......+ =.++++.-.. .-.|-|+|.|+.||-|+.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~ 329 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFP 329 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCC
Confidence 58888888886 5666666663211111 0245553322 347999999999999984
No 87
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.24 Score=56.45 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHhcCCCCcEEEEcCCCCCCc
Q 002707 315 KWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGT 394 (890)
Q Consensus 315 k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMAGRGT 394 (890)
|...+++-. ..-+-.+|+|.+.+....+-..|..+|.....+|+...+.+++-....=-.-.++|-|.|..+-||-
T Consensus 252 k~~~l~dl~----~~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argi 327 (397)
T KOG0327|consen 252 KLDTLCDLY----RRVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGI 327 (397)
T ss_pred cccHHHHHH----HhhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecccccccc
Confidence 555444333 3556678999999999999999999999999999864444554433332233678999999999999
Q ss_pred cee
Q 002707 395 DII 397 (890)
Q Consensus 395 DIk 397 (890)
||.
T Consensus 328 dv~ 330 (397)
T KOG0327|consen 328 DVQ 330 (397)
T ss_pred chh
Confidence 995
No 88
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=95.50 E-value=0.083 Score=66.12 Aligned_cols=108 Identities=14% Similarity=0.167 Sum_probs=83.1
Q ss_pred CCeEEcCCCCCccccc--CCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCc
Q 002707 288 MPVIEVPTNLPNIRVD--LPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 365 (890)
Q Consensus 288 l~vv~IPt~kp~~R~d--~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k 365 (890)
.+|-.|=-.+.+..++ ..-.|-..+.+|+..+.+-+.+..+ .-|++|++.+-+++..+.+-|.+.|+++..|++...
T Consensus 570 ~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~ 648 (997)
T KOG0334|consen 570 KPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVD 648 (997)
T ss_pred CCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCc
Confidence 5554333333333333 2233445689999998877777655 668999999999999999999999999999999867
Q ss_pred chhhHHHHHH-hcCCCCcEEEEcCCCCCCccee
Q 002707 366 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 366 ~~~~EA~IIa-~AG~~G~VTIATNMAGRGTDIk 397 (890)
++.++..|.. +.| +-.++|||.-|-||+|.+
T Consensus 649 q~dR~sti~dfK~~-~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 649 QHDRSSTIEDFKNG-VVNLLVATSVVARGLDVK 680 (997)
T ss_pred hHHHHhHHHHHhcc-CceEEEehhhhhcccccc
Confidence 8888876665 555 567999999999999996
No 89
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=95.13 E-value=0.14 Score=65.30 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHh--cCCCC--cEEEEc
Q 002707 312 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ--AGRKY--AITIST 387 (890)
Q Consensus 312 ~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~--AG~~G--~VTIAT 387 (890)
...|...+..-+......|.-|||+|........|...|...|+++..+++......++ ++|.+ +..++ .+-++|
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq-~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD-ASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHH-HHHHHhccccCCceEEEEec
Confidence 45677666665666677899999999999999999999999999999999864333444 34442 22222 467899
Q ss_pred CCCCCCcce
Q 002707 388 NMAGRGTDI 396 (890)
Q Consensus 388 NMAGRGTDI 396 (890)
..+|-|.++
T Consensus 548 rAGGlGINL 556 (1033)
T PLN03142 548 RAGGLGINL 556 (1033)
T ss_pred cccccCCch
Confidence 999999876
No 90
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.81 E-value=0.058 Score=60.01 Aligned_cols=85 Identities=21% Similarity=0.308 Sum_probs=60.5
Q ss_pred EEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH---hcCCCCcEE
Q 002707 308 SFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA---QAGRKYAIT 384 (890)
Q Consensus 308 i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa---~AG~~G~VT 384 (890)
-|.++.+|..-+-.-. ...+-.|. +|+|.|++..|.|+....+.|.++..++|+ -..+....+= +-| .-..-
T Consensus 302 afV~e~qKvhCLntLf-skLqINQs-IIFCNS~~rVELLAkKITelGyscyyiHak--M~Q~hRNrVFHdFr~G-~crnL 376 (459)
T KOG0326|consen 302 AFVEERQKVHCLNTLF-SKLQINQS-IIFCNSTNRVELLAKKITELGYSCYYIHAK--MAQEHRNRVFHDFRNG-KCRNL 376 (459)
T ss_pred eeechhhhhhhHHHHH-HHhcccce-EEEeccchHhHHHHHHHHhccchhhHHHHH--HHHhhhhhhhhhhhcc-cccee
Confidence 4667777776554333 33445554 589999999999999999999999988884 2222233332 334 33678
Q ss_pred EEcCCCCCCccee
Q 002707 385 ISTNMAGRGTDII 397 (890)
Q Consensus 385 IATNMAGRGTDIk 397 (890)
|||.+.-||.||.
T Consensus 377 VctDL~TRGIDiq 389 (459)
T KOG0326|consen 377 VCTDLFTRGIDIQ 389 (459)
T ss_pred eehhhhhcccccc
Confidence 9999999999995
No 91
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.59 E-value=0.23 Score=60.24 Aligned_cols=143 Identities=22% Similarity=0.249 Sum_probs=89.4
Q ss_pred chHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhh-CCCeEEcCCCCCcccccCCCcEEe
Q 002707 232 EGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF-QMPVIEVPTNLPNIRVDLPIQSFA 310 (890)
Q Consensus 232 ~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY-~l~vv~IPt~kp~~R~d~pd~i~~ 310 (890)
=|+||=...++.-.= |+.+.-||+|--.=.- -...| .|+|-.| .-.|.-|+.-.+.+..
T Consensus 396 FGV~QR~~L~~KG~~------------------~Ph~LvMTATPIPRTL-Alt~fgDldvS~I-dElP~GRkpI~T~~i~ 455 (677)
T COG1200 396 FGVHQRLALREKGEQ------------------NPHVLVMTATPIPRTL-ALTAFGDLDVSII-DELPPGRKPITTVVIP 455 (677)
T ss_pred ccHHHHHHHHHhCCC------------------CCcEEEEeCCCchHHH-HHHHhccccchhh-ccCCCCCCceEEEEec
Confidence 478887777653211 7888999999854221 12455 5666544 2222233333333333
Q ss_pred ChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHH--------HHHHHHHhC--CCCceEeccCCcchhhHHHHHHhcCCC
Q 002707 311 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSE--------YLSDLLKQQ--GIPHNVLNARPKYAAREAETVAQAGRK 380 (890)
Q Consensus 311 t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE--------~ls~~L~~~--gi~h~vLNA~~k~~~~EA~IIa~AG~~ 380 (890)
.++...+++.|.+...+||-+-++|+=|++|| .+++.|+.. +...-+++++=+.+++++-+-+=.-..
T Consensus 456 --~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e 533 (677)
T COG1200 456 --HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGE 533 (677)
T ss_pred --cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCC
Confidence 35666777888888889999999999999987 445666643 334567777644556655444533337
Q ss_pred CcEEEEcCCCCCCcce
Q 002707 381 YAITISTNMAGRGTDI 396 (890)
Q Consensus 381 G~VTIATNMAGRGTDI 396 (890)
..|-|||.--==|.|.
T Consensus 534 ~~ILVaTTVIEVGVdV 549 (677)
T COG1200 534 IDILVATTVIEVGVDV 549 (677)
T ss_pred CcEEEEeeEEEecccC
Confidence 8999999775445444
No 92
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=94.58 E-value=0.43 Score=59.56 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=95.9
Q ss_pred HHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhH--HHHHHhhhC--CCeEEcCCCCCc-ccccCCCcE
Q 002707 234 IHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE--EKEFLKMFQ--MPVIEVPTNLPN-IRVDLPIQS 308 (890)
Q Consensus 234 LHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te--~~Ef~~iY~--l~vv~IPt~kp~-~R~d~pd~i 308 (890)
+|.+.+.|-|+.++-.=.-+..++- . -.--|+|.|.+.. ...|.--.+ +.++.++-.|+. ++.-.|..-
T Consensus 158 iHel~~sKRG~~Lsl~LeRL~~l~~-----~-~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~ 231 (814)
T COG1201 158 IHALAESKRGVQLALSLERLRELAG-----D-FQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVED 231 (814)
T ss_pred hhhhhccccchhhhhhHHHHHhhCc-----c-cEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCc
Confidence 5777777777655432221111111 1 1346999999963 355665554 455566655543 344444322
Q ss_pred EeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCC-CCceEeccCCcchhhHHHH----HHhcCCCCcE
Q 002707 309 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQG-IPHNVLNARPKYAAREAET----VAQAGRKYAI 383 (890)
Q Consensus 309 ~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~g-i~h~vLNA~~k~~~~EA~I----Ia~AG~~G~V 383 (890)
......-|.+.++.|.+..++.+.+||+|.|-..+|.++..|++.+ ++..+=+. .-.+|..+ --+.|. =.+
T Consensus 232 ~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHg---SlSre~R~~vE~~lk~G~-lra 307 (814)
T COG1201 232 LIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHG---SLSRELRLEVEERLKEGE-LKA 307 (814)
T ss_pred cccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecc---cccHHHHHHHHHHHhcCC-ceE
Confidence 2222566888888998888999999999999999999999999987 43222111 11233332 224565 467
Q ss_pred EEEcCCCCCCcce
Q 002707 384 TISTNMAGRGTDI 396 (890)
Q Consensus 384 TIATNMAGRGTDI 396 (890)
.|||.-.==|.||
T Consensus 308 vV~TSSLELGIDi 320 (814)
T COG1201 308 VVATSSLELGIDI 320 (814)
T ss_pred EEEccchhhcccc
Confidence 8999988889888
No 93
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=94.49 E-value=0.23 Score=56.27 Aligned_cols=126 Identities=19% Similarity=0.248 Sum_probs=78.6
Q ss_pred HhhcC--ccccccCCchh-HHHHHHhhhCCC---eEEcCCCCCcccc---cCCCcEEeChhHHHHHHHHHHHHhhhCCCc
Q 002707 262 FKLYP--KLSGMTGTAKT-EEKEFLKMFQMP---VIEVPTNLPNIRV---DLPIQSFATARGKWEYARQEVESMFRLGRP 332 (890)
Q Consensus 262 Fr~Y~--kL~GmTGTa~t-e~~Ef~~iY~l~---vv~IPt~kp~~R~---d~pd~i~~t~~~k~~AIi~ei~~~~~~grP 332 (890)
-|.|+ .|.|+|+||-+ .-....++.++. .+.-.-|+|...- ..| .++++-...|+.-|+.. -.||.
T Consensus 245 krqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp----~n~dd~~edi~k~i~~~-f~gqs 319 (695)
T KOG0353|consen 245 KRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKP----GNEDDCIEDIAKLIKGD-FAGQS 319 (695)
T ss_pred HHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCC----CChHHHHHHHHHHhccc-cCCCc
Confidence 35676 69999999975 233344444443 3444445555321 111 24444445555555443 37999
Q ss_pred EEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHH-HHH---hcCCCCcEEEEcCCCCCCcce
Q 002707 333 VLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAE-TVA---QAGRKYAITISTNMAGRGTDI 396 (890)
Q Consensus 333 VLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~-IIa---~AG~~G~VTIATNMAGRGTDI 396 (890)
=+|.|-|-+++|.++..|+.+||...-.+|. .+-|.. -.. -|| .=.|+|||--.|-|.|=
T Consensus 320 giiyc~sq~d~ekva~alkn~gi~a~~yha~---lep~dks~~hq~w~a~-eiqvivatvafgmgidk 383 (695)
T KOG0353|consen 320 GIIYCFSQKDCEKVAKALKNHGIHAGAYHAN---LEPEDKSGAHQGWIAG-EIQVIVATVAFGMGIDK 383 (695)
T ss_pred ceEEEeccccHHHHHHHHHhcCccccccccc---cCcccccccccccccc-ceEEEEEEeeecccCCC
Confidence 9999999999999999999999975554442 121111 111 122 23689999999999884
No 94
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=94.26 E-value=1.1 Score=58.27 Aligned_cols=77 Identities=12% Similarity=0.192 Sum_probs=49.7
Q ss_pred HHHHHHHHhhh--CCCcEEEEecchhhHHHHHHHHHhC------CCCc---eEeccCCcchhhHHHHHHh--cCCCCcEE
Q 002707 318 YARQEVESMFR--LGRPVLVGSTSVENSEYLSDLLKQQ------GIPH---NVLNARPKYAAREAETVAQ--AGRKYAIT 384 (890)
Q Consensus 318 AIi~ei~~~~~--~grPVLIgt~sI~~SE~ls~~L~~~------gi~h---~vLNA~~k~~~~EA~IIa~--AG~~G~VT 384 (890)
+|++++.+... .+..+||+|.|++.++.+.+.|.+. +..+ .+++... ....++|++ .|..-.|-
T Consensus 684 ~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~---~~~~~li~~Fk~~~~p~Il 760 (1123)
T PRK11448 684 VVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSI---DKPDQLIRRFKNERLPNIV 760 (1123)
T ss_pred HHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCc---cchHHHHHHHhCCCCCeEE
Confidence 45555554332 3368999999999999999988764 2322 2355421 122345553 34323688
Q ss_pred EEcCCCCCCccee
Q 002707 385 ISTNMAGRGTDII 397 (890)
Q Consensus 385 IATNMAGRGTDIk 397 (890)
|+++|+++|+|+.
T Consensus 761 VsvdmL~TG~DvP 773 (1123)
T PRK11448 761 VTVDLLTTGIDVP 773 (1123)
T ss_pred EEecccccCCCcc
Confidence 9999999999994
No 95
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=94.16 E-value=0.62 Score=55.68 Aligned_cols=124 Identities=21% Similarity=0.287 Sum_probs=86.8
Q ss_pred ccccccCCchhHHHHHHhhhCCCeEEcCCCCCcccccCCCcEEe-ChhHHHHHHHHHHHHhh----h---CCCcEEEEec
Q 002707 267 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFA-TARGKWEYARQEVESMF----R---LGRPVLVGST 338 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~-t~~~k~~AIi~ei~~~~----~---~grPVLIgt~ 338 (890)
++-|+|+|.|.- +|+.+..|+..|.- ..+|+--.. ..+|. ++.+||+-|..-+++-. . +|| .+|+|.
T Consensus 374 Q~i~LSATVgNp-~elA~~l~a~lV~y-~~RPVplEr--Hlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQ-tIVFT~ 448 (830)
T COG1202 374 QFIYLSATVGNP-EELAKKLGAKLVLY-DERPVPLER--HLVFARNESEKWDIIARLVKREFSTESSKGYRGQ-TIVFTY 448 (830)
T ss_pred eEEEEEeecCCh-HHHHHHhCCeeEee-cCCCCChhH--eeeeecCchHHHHHHHHHHHHHHhhhhccCcCCc-eEEEec
Confidence 688999999863 45777777776543 234442222 24565 58999998776665432 2 455 689999
Q ss_pred chhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHhc--CCCCcEEEEcCCCCCCccee
Q 002707 339 SVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQA--GRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 339 sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~A--G~~G~VTIATNMAGRGTDIk 397 (890)
|-..++.|+..|..+|++..-.+|.-.| .|...|..+ -+.=++.|.|--.|=|+|+-
T Consensus 449 SRrr~h~lA~~L~~kG~~a~pYHaGL~y--~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFP 507 (830)
T COG1202 449 SRRRCHELADALTGKGLKAAPYHAGLPY--KERKSVERAFAAQELAAVVTTAALAAGVDFP 507 (830)
T ss_pred chhhHHHHHHHhhcCCcccccccCCCcH--HHHHHHHHHHhcCCcceEeehhhhhcCCCCc
Confidence 9999999999999999987666664223 344555533 34457889999999999994
No 96
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.59 E-value=2.2 Score=50.64 Aligned_cols=165 Identities=20% Similarity=0.229 Sum_probs=97.1
Q ss_pred cceEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHh
Q 002707 205 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 284 (890)
Q Consensus 205 ~dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~ 284 (890)
-.+-|.+=+|+|+|+. +|-..+|. +=|++|=+..-|.++ .-.-.|+|.-.+-++|..
T Consensus 321 ~sf~ldsiEVLvlDEA------DRMLeegF--ademnEii~lcpk~R---------------QTmLFSATMteeVkdL~s 377 (691)
T KOG0338|consen 321 PSFNLDSIEVLVLDEA------DRMLEEGF--ADEMNEIIRLCPKNR---------------QTMLFSATMTEEVKDLAS 377 (691)
T ss_pred CCccccceeEEEechH------HHHHHHHH--HHHHHHHHHhccccc---------------cceeehhhhHHHHHHHHH
Confidence 3344445578888864 34445555 446666555555432 122347788788888887
Q ss_pred h-hCCCe-EEcCCCCCc---ccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceE
Q 002707 285 M-FQMPV-IEVPTNLPN---IRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNV 359 (890)
Q Consensus 285 i-Y~l~v-v~IPt~kp~---~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~v 359 (890)
+ .+-+| +.|-+|+.. .|... .+|=...+.--.|++..+....- ..-++|++.+-+.+..+.=+|-=.|+..--
T Consensus 378 lSL~kPvrifvd~~~~~a~~LtQEF-iRIR~~re~dRea~l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agE 455 (691)
T KOG0338|consen 378 LSLNKPVRIFVDPNKDTAPKLTQEF-IRIRPKREGDREAMLASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGE 455 (691)
T ss_pred hhcCCCeEEEeCCccccchhhhHHH-heeccccccccHHHHHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhh
Confidence 4 45555 456555433 22222 22222333333455544443322 566899999999999999888877776555
Q ss_pred eccCCcchhhHHHHHH---hcCCCCcEEEEcCCCCCCccee
Q 002707 360 LNARPKYAAREAETVA---QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 360 LNA~~k~~~~EA~IIa---~AG~~G~VTIATNMAGRGTDIk 397 (890)
|++ +..+|..+-+ =--..=.|-|||..|.||-||.
T Consensus 456 lHG---sLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~ 493 (691)
T KOG0338|consen 456 LHG---SLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIE 493 (691)
T ss_pred hcc---cccHHHHHHHHHHHHhccCCEEEEechhhccCCcc
Confidence 554 2333333222 1112347999999999999995
No 97
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=93.37 E-value=0.38 Score=60.71 Aligned_cols=130 Identities=18% Similarity=0.101 Sum_probs=76.7
Q ss_pred ccccccCCchhHHHHHHhhhCCCeEE-cCCCC-C----cccccCCCcEEeCh---hHHHHHHHHHHHHhhhCCCcEEEEe
Q 002707 267 KLSGMTGTAKTEEKEFLKMFQMPVIE-VPTNL-P----NIRVDLPIQSFATA---RGKWEYARQEVESMFRLGRPVLVGS 337 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~iY~l~vv~-IPt~k-p----~~R~d~pd~i~~t~---~~k~~AIi~ei~~~~~~grPVLIgt 337 (890)
.+-.+|+|.++..+-..+..|.++.. |.-.. | ..-...|...+... .+++...-.-+...+..|.-+|++|
T Consensus 234 q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~ 313 (851)
T COG1205 234 QIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFF 313 (851)
T ss_pred eEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEE
Confidence 67778899987655455666776665 43221 1 11112232222222 2555555555566788999999999
Q ss_pred cchhhHHHHH----HHHHhCC--CCceEeccCCcchhhHHHHHHhcCC--CCcEEEEcCCCCCCcce
Q 002707 338 TSVENSEYLS----DLLKQQG--IPHNVLNARPKYAAREAETVAQAGR--KYAITISTNMAGRGTDI 396 (890)
Q Consensus 338 ~sI~~SE~ls----~~L~~~g--i~h~vLNA~~k~~~~EA~IIa~AG~--~G~VTIATNMAGRGTDI 396 (890)
.|-..+|.+. ..+...+ ....|..-+.-++..|...|...=+ ...+.||||++==|.||
T Consensus 314 ~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelgidi 380 (851)
T COG1205 314 RSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDI 380 (851)
T ss_pred ehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceee
Confidence 9999999996 4444444 1111221122356666654443322 45678999998888888
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=93.15 E-value=0.8 Score=51.90 Aligned_cols=121 Identities=21% Similarity=0.296 Sum_probs=74.1
Q ss_pred cccCCchhHHHHHH-hh--hCCCeEEcCCCCCcccccCCCcEEeChhHHHH-------HHHHHHHHhhhCCCcEEEEecc
Q 002707 270 GMTGTAKTEEKEFL-KM--FQMPVIEVPTNLPNIRVDLPIQSFATARGKWE-------YARQEVESMFRLGRPVLVGSTS 339 (890)
Q Consensus 270 GmTGTa~te~~Ef~-~i--Y~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~-------AIi~ei~~~~~~grPVLIgt~s 339 (890)
-||+|- .+++. ++ =++..+.+|+..-..-.-.|-.++...-.|.- ++...+...+.+|+||||+.++
T Consensus 238 ylTATp---~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~ 314 (441)
T COG4098 238 YLTATP---TKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPE 314 (441)
T ss_pred EEecCC---hHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecc
Confidence 367776 33443 23 35556788874333223344445443222221 5778888889999999999999
Q ss_pred hhhHHHHHHHHHhC-CCCc-eEeccCCcchhhHHHHHH-hcCCCCcEEEEcCCCCCCcce
Q 002707 340 VENSEYLSDLLKQQ-GIPH-NVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDI 396 (890)
Q Consensus 340 I~~SE~ls~~L~~~-gi~h-~vLNA~~k~~~~EA~IIa-~AG~~G~VTIATNMAGRGTDI 396 (890)
|+..|.+++.|++. .-.+ .-..+. ..+..| .+-+ +-| .=.|.|+|.+.-||.-+
T Consensus 315 I~~~eq~a~~lk~~~~~~~i~~Vhs~-d~~R~E-kV~~fR~G-~~~lLiTTTILERGVTf 371 (441)
T COG4098 315 IETMEQVAAALKKKLPKETIASVHSE-DQHRKE-KVEAFRDG-KITLLITTTILERGVTF 371 (441)
T ss_pred hHHHHHHHHHHHhhCCccceeeeecc-CccHHH-HHHHHHcC-ceEEEEEeehhhccccc
Confidence 99999999999653 2222 122231 234444 2222 334 33677899999999876
No 99
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=93.14 E-value=9.2 Score=44.91 Aligned_cols=118 Identities=24% Similarity=0.312 Sum_probs=79.0
Q ss_pred ccccCCchhHHHHHHhhh-CCCeE-Ec-CCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHH
Q 002707 269 SGMTGTAKTEEKEFLKMF-QMPVI-EV-PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY 345 (890)
Q Consensus 269 ~GmTGTa~te~~Ef~~iY-~l~vv-~I-Pt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ 345 (890)
+-||+|+.....-+.+.+ +=+|+ .. -.+.|..-+-...+|-.++.+|+.-+..-.+-..-+|+ +||+..+|+.+-.
T Consensus 205 ~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gK-sliFVNtIdr~Yr 283 (569)
T KOG0346|consen 205 FLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGK-SLIFVNTIDRCYR 283 (569)
T ss_pred eeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCc-eEEEEechhhhHH
Confidence 469999998887788754 33443 22 12223222223334556788888655544443444565 6889999999999
Q ss_pred HHHHHHhCCCCceEeccC-CcchhhHHHHHHh--cCCCCcEEEEcCCC
Q 002707 346 LSDLLKQQGIPHNVLNAR-PKYAAREAETVAQ--AGRKYAITISTNMA 390 (890)
Q Consensus 346 ls~~L~~~gi~h~vLNA~-~k~~~~EA~IIa~--AG~~G~VTIATNMA 390 (890)
|--.|.+-||+.-|||.- |-|. --.||.| +| .-.+.|||.--
T Consensus 284 LkLfLeqFGiksciLNseLP~NS--R~Hii~QFNkG-~YdivIAtD~s 328 (569)
T KOG0346|consen 284 LKLFLEQFGIKSCILNSELPANS--RCHIIEQFNKG-LYDIVIATDDS 328 (569)
T ss_pred HHHHHHHhCcHhhhhcccccccc--hhhHHHHhhCc-ceeEEEEccCc
Confidence 999999999999999973 3222 2478885 45 46899999754
No 100
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.75 E-value=0.11 Score=47.67 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=58.5
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHHH--HhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCC
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKP 102 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~--rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~ 102 (890)
+++.|..|++.-.+.+...+.. ++.+........... +.....++|.++|...+.....+.. ...+ .
T Consensus 35 v~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~-------~~~~---~ 103 (144)
T cd00046 35 VLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLK-------LSLK---K 103 (144)
T ss_pred EEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCC-------cchh---c
Confidence 8888899998777777766655 688887766544332 3346778999999998875544332 2334 7
Q ss_pred cceEEeccCCeeeec
Q 002707 103 FHFAIVDEVDSVLID 117 (890)
Q Consensus 103 ~~~aIVDEvDSiLID 117 (890)
++++||||++.+.-.
T Consensus 104 ~~~iiiDE~h~~~~~ 118 (144)
T cd00046 104 LDLLILDEAHRLLNQ 118 (144)
T ss_pred CCEEEEeCHHHHhhc
Confidence 899999999988644
No 101
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.68 E-value=1.1 Score=52.69 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=40.6
Q ss_pred EEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHHHHHhcCCCCC
Q 002707 538 HVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDED 600 (890)
Q Consensus 538 ~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~ 600 (890)
.||--+.+-|.+---.+.||+||-|.-|+.--.++=++ +|.|. +++++.+..++
T Consensus 504 ~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~--~r~F~-------klL~~~~~~d~ 557 (620)
T KOG0350|consen 504 NVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHE--KRLFS-------KLLKKTNLWDG 557 (620)
T ss_pred eEeecCCCchhhHHHHhhcccccccCCceEEEeecccc--chHHH-------HHHHHhcccCC
Confidence 47888888888888899999999999999877776555 55554 55665555444
No 102
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.61 E-value=1.4 Score=54.32 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhC--CCCceEeccCCcchhhHH-HHHHhcCC-CCcEEEEcCCCCCCcce
Q 002707 342 NSEYLSDLLKQQ--GIPHNVLNARPKYAAREA-ETVAQAGR-KYAITISTNMAGRGTDI 396 (890)
Q Consensus 342 ~SE~ls~~L~~~--gi~h~vLNA~~k~~~~EA-~IIa~AG~-~G~VTIATNMAGRGTDI 396 (890)
-+|.+.+.|++. +.+...+++......++. +++.+-.. .-.|-|+|+|+.||-|+
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~ 496 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDF 496 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCC
Confidence 367888888886 666666666321111222 34443222 44799999999999999
No 103
>KOG4284 consensus DEAD box protein [Transcription]
Probab=92.32 E-value=0.24 Score=59.52 Aligned_cols=61 Identities=21% Similarity=0.332 Sum_probs=49.1
Q ss_pred EEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHhcCCCC---cEEEEcCCCCCCcce
Q 002707 333 VLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKY---AITISTNMAGRGTDI 396 (890)
Q Consensus 333 VLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~AG~~G---~VTIATNMAGRGTDI 396 (890)
.||+|.++..++.++..|+..|+++..+.+. -++-....+-+|.+. .|-|||.+-.||.|-
T Consensus 275 AlVF~~~~sra~~~a~~L~ssG~d~~~ISga---M~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa 338 (980)
T KOG4284|consen 275 ALVFCDQISRAEPIATHLKSSGLDVTFISGA---MSQKDRLLAVDQLRAFRVRILVSTDLTARGIDA 338 (980)
T ss_pred HHhhhhhhhhhhHHHHHhhccCCCeEEeccc---cchhHHHHHHHHhhhceEEEEEecchhhccCCc
Confidence 4899999999999999999999999988763 233234555555543 799999999999996
No 104
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.87 E-value=1.7 Score=50.96 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=61.4
Q ss_pred eChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhC--CCCceEeccCCcchhhHHHHHHhcCCCCcEEEEc
Q 002707 310 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVLNARPKYAAREAETVAQAGRKYAITIST 387 (890)
Q Consensus 310 ~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~--gi~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIAT 387 (890)
-...+|...+++-+.. ..-.-++|+.+|-...+..+..|... +++.--++++-+|.++-..+-+---.+..|-++|
T Consensus 237 ~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T 314 (567)
T KOG0345|consen 237 CEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT 314 (567)
T ss_pred ecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEee
Confidence 4678899888876655 35567899999999999998888775 3444445565444444333333333478899999
Q ss_pred CCCCCCccee
Q 002707 388 NMAGRGTDII 397 (890)
Q Consensus 388 NMAGRGTDIk 397 (890)
..|.||.||-
T Consensus 315 DVaARGlDip 324 (567)
T KOG0345|consen 315 DVAARGLDIP 324 (567)
T ss_pred hhhhccCCCC
Confidence 9999999993
No 105
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=91.50 E-value=0.16 Score=51.69 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=58.1
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHHHHhhcc--CCCCeeecCcchhhhHHhhhcccCcchhcccCCCC
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKP 102 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~rr~aY--~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~ 102 (890)
||+....|+..=++.+..+....++.+++...+.+...+...| .++|+.||...+ .++|+.+- ...+ .
T Consensus 74 ii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~~------~~~~---~ 143 (203)
T cd00268 74 ILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRL-LDLLERGK------LDLS---K 143 (203)
T ss_pred EEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHH-HHHHHcCC------CChh---h
Confidence 6666667777666666666666788888887777766666777 689999999877 44553221 2234 7
Q ss_pred cceEEeccCCeee
Q 002707 103 FHFAIVDEVDSVL 115 (890)
Q Consensus 103 ~~~aIVDEvDSiL 115 (890)
+.++||||+|.+.
T Consensus 144 l~~lIvDE~h~~~ 156 (203)
T cd00268 144 VKYLVLDEADRML 156 (203)
T ss_pred CCEEEEeChHHhh
Confidence 8999999999866
No 106
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=91.27 E-value=0.45 Score=54.95 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=46.2
Q ss_pred EEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHhcCC--CCcEEEEcCCCCCCcce
Q 002707 333 VLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGR--KYAITISTNMAGRGTDI 396 (890)
Q Consensus 333 VLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~AG~--~G~VTIATNMAGRGTDI 396 (890)
=+|.|++-+++|.++=.|..+||+..-.+|.- ...|...|-++=- .--|++|||-.|-|+|=
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGL--K~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDK 321 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGL--KKKERTEVQEKWMNNEIPVIAATVSFGMGVDK 321 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhccc--ccchhHHHHHHHhcCCCCEEEEEeccccccCC
Confidence 47999999999999999999999865555531 2345555544422 23589999999999995
No 107
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=90.63 E-value=1.5 Score=55.54 Aligned_cols=137 Identities=20% Similarity=0.167 Sum_probs=84.7
Q ss_pred chhHHhhcCccccccCCchhH--HHHHHhhhCCC---eEEc-CCCCCc---ccc----cCCCcEEeChhHHHHHHHHHHH
Q 002707 258 YQSLFKLYPKLSGMTGTAKTE--EKEFLKMFQMP---VIEV-PTNLPN---IRV----DLPIQSFATARGKWEYARQEVE 324 (890)
Q Consensus 258 ~q~~Fr~Y~kL~GmTGTa~te--~~Ef~~iY~l~---vv~I-Pt~kp~---~R~----d~pd~i~~t~~~k~~AIi~ei~ 324 (890)
.+.+|..+..+..||||+.+. .+-|.+..|++ +..+ |+-.+- .+. |.|+.-..+.++-..++++.+.
T Consensus 588 ~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~ 667 (850)
T TIGR01407 588 TKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYII 667 (850)
T ss_pred HHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHH
Confidence 356677777888999999753 33455677774 2233 333221 111 2222112344555567887777
Q ss_pred Hhhh-CCCcEEEEecchhhHHHHHHHHHhCCC--CceEeccCCcchhhHHHHHHh--cCCCCcEEEEcCCCCCCccee
Q 002707 325 SMFR-LGRPVLVGSTSVENSEYLSDLLKQQGI--PHNVLNARPKYAAREAETVAQ--AGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 325 ~~~~-~grPVLIgt~sI~~SE~ls~~L~~~gi--~h~vLNA~~k~~~~EA~IIa~--AG~~G~VTIATNMAGRGTDIk 397 (890)
+... .+.++||.++|.+..+.+++.|...+. ...++-.. ....++ +++.+ .| .++|-++|.-+.+|.|+.
T Consensus 668 ~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~-~~~~r~-~ll~~F~~~-~~~iLlgt~sf~EGVD~~ 742 (850)
T TIGR01407 668 EITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQG-INGSRA-KIKKRFNNG-EKAILLGTSSFWEGVDFP 742 (850)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecC-CCccHH-HHHHHHHhC-CCeEEEEcceeecccccC
Confidence 6643 445799999999999999999986321 12344322 122333 35543 44 678999999999999997
No 108
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.23 E-value=1.4 Score=51.04 Aligned_cols=154 Identities=21% Similarity=0.188 Sum_probs=94.9
Q ss_pred eCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhhCCCe--EE--c
Q 002707 218 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV--IE--V 293 (890)
Q Consensus 218 D~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~v--v~--I 293 (890)
|+.++-. .+-|++-||+-+-.--+ .-+| .-||||++..--+|.+-=-.+= |. |
T Consensus 171 dEadrlf--emgfqeql~e~l~rl~~-----~~QT----------------llfSatlp~~lv~fakaGl~~p~lVRldv 227 (529)
T KOG0337|consen 171 DEADRLF--EMGFQEQLHEILSRLPE-----SRQT----------------LLFSATLPRDLVDFAKAGLVPPVLVRLDV 227 (529)
T ss_pred hhhhHHH--hhhhHHHHHHHHHhCCC-----cceE----------------EEEeccCchhhHHHHHccCCCCceEEeeh
Confidence 5555543 34588888887754211 1122 2478999876666665311111 11 1
Q ss_pred CCCCCcccccCCCcE-EeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHH
Q 002707 294 PTNLPNIRVDLPIQS-FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAE 372 (890)
Q Consensus 294 Pt~kp~~R~d~pd~i-~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~ 372 (890)
-| .+-.+..-.. ..-.++|..|+..-+.. +-.....+|++.+--.+|.++..|...|+.+..+..- ..++|.
T Consensus 228 et---kise~lk~~f~~~~~a~K~aaLl~il~~-~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iyss---lD~~aR 300 (529)
T KOG0337|consen 228 ET---KISELLKVRFFRVRKAEKEAALLSILGG-RIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSS---LDQEAR 300 (529)
T ss_pred hh---hcchhhhhheeeeccHHHHHHHHHHHhc-cccccceeEEecccchHHHHHHHHHhcCCCccccccc---cChHhh
Confidence 11 0111222222 23456777666543332 3334578999999999999999999999988877763 334444
Q ss_pred ---HHHhcCCCCcEEEEcCCCCCCcceecCCC
Q 002707 373 ---TVAQAGRKYAITISTNMAGRGTDIILGGN 401 (890)
Q Consensus 373 ---IIa~AG~~G~VTIATNMAGRGTDIkLggn 401 (890)
+-.=-|.++.+-|.|..|-||.||-++.|
T Consensus 301 k~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 301 KINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred hhccccccCCccceEEEehhhhccCCCccccc
Confidence 44445668889999999999999988753
No 109
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=87.48 E-value=1.8 Score=54.87 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=55.7
Q ss_pred ccccccCCchh--HHHHHHhh--hCCCeEEcCCCCCcccccCC-CcEEe----ChhHHHHHHHHHHHHhhhCCCcEEEEe
Q 002707 267 KLSGMTGTAKT--EEKEFLKM--FQMPVIEVPTNLPNIRVDLP-IQSFA----TARGKWEYARQEVESMFRLGRPVLVGS 337 (890)
Q Consensus 267 kL~GmTGTa~t--e~~Ef~~i--Y~l~vv~IPt~kp~~R~d~p-d~i~~----t~~~k~~AIi~ei~~~~~~grPVLIgt 337 (890)
+|.|+|+|+.. .-.+|.++ |-==+...-.++|+.-...- ..=++ +...-.+.-.+++.+.++.|.+|||++
T Consensus 277 RivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFv 356 (1230)
T KOG0952|consen 277 RIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFV 356 (1230)
T ss_pred EEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEE
Confidence 68999999986 34678876 42223334455665321110 00001 111112234567778899999999999
Q ss_pred cchhhHHHHHHHHHhCCCC
Q 002707 338 TSVENSEYLSDLLKQQGIP 356 (890)
Q Consensus 338 ~sI~~SE~ls~~L~~~gi~ 356 (890)
.+-+..-..++.|.+.+..
T Consensus 357 hsR~~Ti~tA~~l~~~a~~ 375 (1230)
T KOG0952|consen 357 HSRNETIRTAKKLRERAET 375 (1230)
T ss_pred ecChHHHHHHHHHHHHHHh
Confidence 9998888888888776543
No 110
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=86.21 E-value=4.3 Score=48.58 Aligned_cols=176 Identities=18% Similarity=0.220 Sum_probs=118.5
Q ss_pred CCeEEEEeCCC-CccccCcccCchH-HHHHHhHhCCcccc--CCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhh
Q 002707 211 NGKALIINELT-GRVEEKRRWSEGI-HQAVEAKEGLKIQA--DSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 286 (890)
Q Consensus 211 dg~I~iVD~~T-GR~~~gr~ws~GL-HQalEaKEgv~It~--e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY 286 (890)
++=.++|||+. -.++-+--|..-- .--.=.-.|+.+.. .|+. .+|..|-++-++..-+|+|-|..+-|...--
T Consensus 331 ~d~Ll~IDESHvTvPQi~gMynGDrsRK~~LVeyGFRLPSAlDNRP---L~feEf~~~~~q~i~VSATPg~~E~e~s~~~ 407 (663)
T COG0556 331 DDFLLFIDESHVTVPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRP---LKFEEFEAKIPQTIYVSATPGDYELEQSGGN 407 (663)
T ss_pred cceEEEEeccccchHhhhchhcccHHHHHHHHHhcCcCcccccCCC---CCHHHHHHhcCCEEEEECCCChHHHHhccCc
Confidence 34578899853 2333332232221 11111234665543 4554 4677777777889999999998665443311
Q ss_pred CCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcc
Q 002707 287 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 366 (890)
Q Consensus 287 ~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~ 366 (890)
=++-+.=||... -|.........+..-++.||..+.++|--|||.|-+...||.|.+.|+..||+..-|+...+-
T Consensus 408 vveQiIRPTGLl-----DP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidT 482 (663)
T COG0556 408 VVEQIIRPTGLL-----DPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDT 482 (663)
T ss_pred eeEEeecCCCCC-----CCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchH
Confidence 122233477652 244445666778899999999999999999999999999999999999999999888874322
Q ss_pred hhhHHHHHH--hcCCCCcEEEEcCCCCCCcce
Q 002707 367 AAREAETVA--QAGRKYAITISTNMAGRGTDI 396 (890)
Q Consensus 367 ~~~EA~IIa--~AG~~G~VTIATNMAGRGTDI 396 (890)
.++ -+||. +.| .-.|.|--|+.--|-||
T Consensus 483 lER-~eIirdLR~G-~~DvLVGINLLREGLDi 512 (663)
T COG0556 483 LER-VEIIRDLRLG-EFDVLVGINLLREGLDL 512 (663)
T ss_pred HHH-HHHHHHHhcC-CccEEEeehhhhccCCC
Confidence 222 46776 445 34788999999999998
No 111
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.04 E-value=1.1 Score=52.51 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=65.0
Q ss_pred CcchhHHHHHHhhcC--Ceeeccc--------------------ceeccchhhhccHHHHHHHHHHhCCccccccCCCCH
Q 002707 3 HFDVQIIGGAVLHDG--SIAEMKT--------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIP 60 (890)
Q Consensus 3 ~ydVQliGg~~L~~G--~IaEMkT--------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~ 60 (890)
+.++|...--++.+| -++-|.| ||+....|+.. +.. -+..+|++++...++.+.
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~d---q~~-~l~~~gi~~~~l~~~~~~ 87 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMED---QVL-QLKASGIPATFLNSSQSK 87 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHH---HHH-HHHHcCCcEEEEeCCCCH
Confidence 345665555555554 4788888 77777778763 333 235689999988887777
Q ss_pred HHHhhcc------CCCCeeecCcchhhhH-HhhhcccCcchhcccCCCCcceEEeccCCeee
Q 002707 61 EERRSNY------RCDITYTNNSELGFDY-LRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 115 (890)
Q Consensus 61 ~~rr~aY------~~DItYgT~~efgFDy-LRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiL 115 (890)
.+++..+ ..+|+|+|..-+.-.. +...+. -.. .+.++||||+|.|+
T Consensus 88 ~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~------~~~---~i~~iViDEaH~i~ 140 (470)
T TIGR00614 88 EQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLE------ERK---GITLIAVDEAHCIS 140 (470)
T ss_pred HHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHH------hcC---CcCEEEEeCCcccC
Confidence 6555443 3589999997654221 122221 123 78999999999875
No 112
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.52 E-value=10 Score=46.43 Aligned_cols=121 Identities=22% Similarity=0.256 Sum_probs=75.3
Q ss_pred ccccccCCchhHHHHHHhhh-CCCeEEcCCCCCcccccCC-CcEE--eChhHHHHHHHHHHHHhhh--CCCcEEEEecch
Q 002707 267 KLSGMTGTAKTEEKEFLKMF-QMPVIEVPTNLPNIRVDLP-IQSF--ATARGKWEYARQEVESMFR--LGRPVLVGSTSV 340 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~iY-~l~vv~IPt~kp~~R~d~p-d~i~--~t~~~k~~AIi~ei~~~~~--~grPVLIgt~sI 340 (890)
||.-+|+|.- +++|...+ +..|+.||--+ +| |..| +.++.-..|.+..|.+.|- .+--|||+-+--
T Consensus 412 KllIsSAT~D--AekFS~fFDdapIF~iPGRR------yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQ 483 (902)
T KOG0923|consen 412 KLLISSATMD--AEKFSAFFDDAPIFRIPGRR------YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQ 483 (902)
T ss_pred eEEeeccccC--HHHHHHhccCCcEEeccCcc------cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccH
Confidence 7888888874 56788887 67889998744 22 2333 2466777898889988873 334588888777
Q ss_pred hhHHHHHHHHHhC----C--CC-ceE--eccCCcchh-hHHHHHHhcCCC--CcEEEEcCCCCCCcceecCC
Q 002707 341 ENSEYLSDLLKQQ----G--IP-HNV--LNARPKYAA-REAETVAQAGRK--YAITISTNMAGRGTDIILGG 400 (890)
Q Consensus 341 ~~SE~ls~~L~~~----g--i~-h~v--LNA~~k~~~-~EA~IIa~AG~~--G~VTIATNMAGRGTDIkLgg 400 (890)
++-|...+.|+.. | |+ .-| +.| |-. .+..-|=+--.+ ..|.+|||+|- |-|.+.|
T Consensus 484 eEIEt~~e~l~~~~~~LGski~eliv~PiYa---NLPselQakIFePtP~gaRKVVLATNIAE--TSlTIdg 550 (902)
T KOG0923|consen 484 EEIETVKENLKERCRRLGSKIRELIVLPIYA---NLPSELQAKIFEPTPPGARKVVLATNIAE--TSLTIDG 550 (902)
T ss_pred HHHHHHHHHHHHHHHHhccccceEEEeeccc---cCChHHHHhhcCCCCCCceeEEEeecchh--hceeecC
Confidence 7766666666552 2 21 111 233 222 223344444455 46999999995 5555544
No 113
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.23 E-value=0.81 Score=54.02 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=66.4
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHHHHhhccCC--CCeeecCcchhhhHHhhhcccCcchhcccCCCC
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRC--DITYTNNSELGFDYLRDNLAANSEQLVMRWPKP 102 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~rr~aY~~--DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~ 102 (890)
|.+.-.-||-.=+.-...+-+|-.|+||+...+++....-.+..+ ||+-+|..-|- |.||..+.. .+- .
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlI-DHlrNs~sf-----~ld---s 327 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLI-DHLRNSPSF-----NLD---S 327 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHH-HHhccCCCc-----ccc---c
Confidence 778888999988888899999999999999999887655555554 99999999873 555544433 233 6
Q ss_pred cceEEeccCCeeeec
Q 002707 103 FHFAIVDEVDSVLID 117 (890)
Q Consensus 103 ~~~aIVDEvDSiLID 117 (890)
..+.|+||+|.||=+
T Consensus 328 iEVLvlDEADRMLee 342 (691)
T KOG0338|consen 328 IEVLVLDEADRMLEE 342 (691)
T ss_pred eeEEEechHHHHHHH
Confidence 788999999999833
No 114
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=83.47 E-value=1.1 Score=53.52 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=63.9
Q ss_pred ceeccchhhhccHHHHHHHHHHh-CCccccccCCCCHHHHhhccC--CCCeeecCcchhhhHHhhhcccCcchhcccCCC
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFL-GLSVGLIQRGMIPEERRSNYR--CDITYTNNSELGFDYLRDNLAANSEQLVMRWPK 101 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~L-GLsvg~i~~~~~~~~rr~aY~--~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R 101 (890)
|++...-||..=++.+..+-..+ ++.+.++..+++.......-. +||++||..-+- |++.-. .+...
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRll-D~i~~~------~l~l~--- 173 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLL-DLIKRG------KLDLS--- 173 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHH-HHHHcC------Ccchh---
Confidence 78888899998889999999999 899999888777654444444 899999999875 665433 23444
Q ss_pred CcceEEeccCCeee
Q 002707 102 PFHFAIVDEVDSVL 115 (890)
Q Consensus 102 ~~~~aIVDEvDSiL 115 (890)
...++|+||||-||
T Consensus 174 ~v~~lVlDEADrmL 187 (513)
T COG0513 174 GVETLVLDEADRML 187 (513)
T ss_pred hcCEEEeccHhhhh
Confidence 78999999999998
No 115
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.89 E-value=0.74 Score=50.23 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=30.0
Q ss_pred EeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhh
Q 002707 540 IGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMF 578 (890)
Q Consensus 540 IgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~ 578 (890)
+--.++|+.---..+.|||||=|-.|-+--|+|.|.+--
T Consensus 321 ~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~ 359 (387)
T KOG0329|consen 321 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 359 (387)
T ss_pred eccCCCCCchHHHHHhhhhhccccccceeehhcchhhHH
Confidence 444556665556677899999999999999999887543
No 116
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=80.57 E-value=0.9 Score=44.47 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=57.9
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHH-HHh-hc-cCCCCeeecCcchhhhHHhhhcccCcchhcccCCC
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPE-ERR-SN-YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPK 101 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~-~rr-~a-Y~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R 101 (890)
+++....|+..=++.+..++...++++.....+.+.. +.. .. ..+||.++|...|- +.++. .. .-..
T Consensus 49 ii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~-~~~~~----~~--~~~~--- 118 (169)
T PF00270_consen 49 IIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLL-DLISN----GK--INIS--- 118 (169)
T ss_dssp EEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHH-HHHHT----TS--STGT---
T ss_pred EEeecccccccccccccccccccccccccccccccccccccccccccccccccCcchhh-ccccc----cc--cccc---
Confidence 7888899999888888888877788888887766633 222 22 35899999998754 23322 11 1112
Q ss_pred CcceEEeccCCeeeec
Q 002707 102 PFHFAIVDEVDSVLID 117 (890)
Q Consensus 102 ~~~~aIVDEvDSiLID 117 (890)
.+.++||||+|.+.-+
T Consensus 119 ~~~~iViDE~h~l~~~ 134 (169)
T PF00270_consen 119 RLSLIVIDEAHHLSDE 134 (169)
T ss_dssp TESEEEEETHHHHHHT
T ss_pred cceeeccCcccccccc
Confidence 4889999999987644
No 117
>PRK01172 ski2-like helicase; Provisional
Probab=77.98 E-value=3 Score=51.29 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=67.4
Q ss_pred CcchhHHHHHHhhcCC--eeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 3 HFDVQIIGGAVLHDGS--IAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 3 ~ydVQliGg~~L~~G~--IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
+|++|--.--.+.+|+ |+-+.| +|+.-.-||..=++.+..+. .+|+.|+..+.+
T Consensus 23 l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~ 101 (674)
T PRK01172 23 LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGD 101 (674)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCC
Confidence 4556655555556664 555555 66677789988788777753 589998877665
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCc
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNP 122 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtp 122 (890)
.+...+. .-.+||+.+|...+ |.|-.+ . ..... .+.++||||+|.+ .|+.+.|
T Consensus 102 ~~~~~~~-~~~~dIiv~Tpek~--~~l~~~---~--~~~l~---~v~lvViDEaH~l-~d~~rg~ 154 (674)
T PRK01172 102 YDDPPDF-IKRYDVVILTSEKA--DSLIHH---D--PYIIN---DVGLIVADEIHII-GDEDRGP 154 (674)
T ss_pred CCCChhh-hccCCEEEECHHHH--HHHHhC---C--hhHHh---hcCEEEEecchhc-cCCCccH
Confidence 4432221 12469999999863 333111 1 12234 7899999999965 4555543
No 118
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=77.67 E-value=2.8 Score=53.62 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=57.6
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHHHHhhcc------CCCCeeecCcchhhhHHhhhcccCcchhccc
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMR 98 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~rr~aY------~~DItYgT~~efgFDyLRD~~~~~~~~~v~r 98 (890)
|++...-||..=++.+..++.-+|++|+......+..++++.. .+||+.||.. .|... ...+
T Consensus 505 vLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-----ll~~~-------v~f~ 572 (926)
T TIGR00580 505 VLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK-----LLQKD-------VKFK 572 (926)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH-----HhhCC-------CCcc
Confidence 8888999999999999999999999999887777766655433 4799999973 23211 1234
Q ss_pred CCCCcceEEeccCCee
Q 002707 99 WPKPFHFAIVDEVDSV 114 (890)
Q Consensus 99 ~~R~~~~aIVDEvDSi 114 (890)
.+.++||||+|..
T Consensus 573 ---~L~llVIDEahrf 585 (926)
T TIGR00580 573 ---DLGLLIIDEEQRF 585 (926)
T ss_pred ---cCCEEEeeccccc
Confidence 7899999999984
No 119
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=74.22 E-value=15 Score=46.60 Aligned_cols=134 Identities=17% Similarity=0.172 Sum_probs=84.3
Q ss_pred hhHHhhcCccccccCCchh--HHHHHHhhhCCCe---EEcCCCCCcccc-----cCCCcEEeChhHHHHHHHHHHHHhhh
Q 002707 259 QSLFKLYPKLSGMTGTAKT--EEKEFLKMFQMPV---IEVPTNLPNIRV-----DLPIQSFATARGKWEYARQEVESMFR 328 (890)
Q Consensus 259 q~~Fr~Y~kL~GmTGTa~t--e~~Ef~~iY~l~v---v~IPt~kp~~R~-----d~pd~i~~t~~~k~~AIi~ei~~~~~ 328 (890)
+.+|.....+..+|||+.. .-. |.+..|++. ..+|.+.+.++. |.|+.--.+.++...++++.|.....
T Consensus 567 ~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~ 645 (820)
T PRK07246 567 SQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQ 645 (820)
T ss_pred HHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHh
Confidence 6677766778888888852 222 777777742 233422222221 22321112345555678888876667
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHhcC-CCCcEEEEcCCCCCCccee
Q 002707 329 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAG-RKYAITISTNMAGRGTDII 397 (890)
Q Consensus 329 ~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~AG-~~G~VTIATNMAGRGTDIk 397 (890)
.+..+||.++|-+.-+.+++.|....+++ |--. ....+ ..++++-- ..++|-++|.-.--|.|+.
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~--l~Qg-~~~~~-~~l~~~F~~~~~~vLlG~~sFwEGVD~p 711 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH--LAQE-KNGTA-YNIKKRFDRGEQQILLGLGSFWEGVDFV 711 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE--EEeC-CCccH-HHHHHHHHcCCCeEEEecchhhCCCCCC
Confidence 78899999999999999999998765444 3221 11122 34665321 2568999999999999995
No 120
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=72.50 E-value=9.5 Score=44.62 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=50.8
Q ss_pred hhhCCCcEEEEecchhhHHHHHHHHHhCCCCc---eEeccCCcchhhHHHHHHhcCCCCcEEEEcCCCCCCccee
Q 002707 326 MFRLGRPVLVGSTSVENSEYLSDLLKQQGIPH---NVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 326 ~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h---~vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMAGRGTDIk 397 (890)
.|+-.+. +|+|++-.+++-|-+++.++|-.| .-|....|-+++-+++-.-.-..-..-|+|..|.||.||.
T Consensus 502 ~h~mdka-iifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~ 575 (725)
T KOG0349|consen 502 RHAMDKA-IIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDIT 575 (725)
T ss_pred hhccCce-EEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhcccccc
Confidence 4555555 578999999999999999987643 3466543456665555543322335679999999999995
No 121
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=69.97 E-value=25 Score=43.58 Aligned_cols=117 Identities=22% Similarity=0.272 Sum_probs=69.9
Q ss_pred ccccccCCchhHHHHHHhhhC-CCeEEcCCCC-CcccccCCCcEEeC--hhHHHHHHHHHHHHhhhCCCc--EEEEecch
Q 002707 267 KLSGMTGTAKTEEKEFLKMFQ-MPVIEVPTNL-PNIRVDLPIQSFAT--ARGKWEYARQEVESMFRLGRP--VLVGSTSV 340 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~iY~-l~vv~IPt~k-p~~R~d~pd~i~~t--~~~k~~AIi~ei~~~~~~grP--VLIgt~sI 340 (890)
||.-+|+|. .++-|...|| ++.+.||-.. |+ +.+|.. -++-..|.+.++...|..+.| +||+.+--
T Consensus 502 KliVtSATm--~a~kf~nfFgn~p~f~IpGRTyPV------~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 502 KLIVTSATM--DAQKFSNFFGNCPQFTIPGRTYPV------EIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred eEEEeeccc--cHHHHHHHhCCCceeeecCCccce------EEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCC
Confidence 666777776 3566888887 8889998532 33 223332 234446888888888887764 89988755
Q ss_pred hh----HHHHHHHHHhC----CCCceEeccCC-cchhhHHHHHHhc-CCCCcEEEEcCCCC
Q 002707 341 EN----SEYLSDLLKQQ----GIPHNVLNARP-KYAAREAETVAQA-GRKYAITISTNMAG 391 (890)
Q Consensus 341 ~~----SE~ls~~L~~~----gi~h~vLNA~~-k~~~~EA~IIa~A-G~~G~VTIATNMAG 391 (890)
+. ++.|+..|.+. +-...||--.. --..--+.|.-.| |-...++||||.|-
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAE 634 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAE 634 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchh
Confidence 54 44555555442 11334443310 0112235555423 33557999999985
No 122
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=69.77 E-value=14 Score=36.69 Aligned_cols=70 Identities=24% Similarity=0.332 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhC----CCCceEeccCCcchhhHHHHHHhcCCCCcEEEEcCCC-
Q 002707 316 WEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMA- 390 (890)
Q Consensus 316 ~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~----gi~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMA- 390 (890)
...++.-+.+..++|+-|+|.|.+.+.++.|.+.|-.. -|||.+.+.. ... + --|.|+++..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---~~~--------~--~PV~i~~~~~~ 81 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---PAA--------R--QPVLITWDQEA 81 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---STT------------SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---CCC--------C--CeEEEecCccc
Confidence 47888888899999999999999999999999999764 5899886542 111 1 2699999883
Q ss_pred --CCCcceec
Q 002707 391 --GRGTDIIL 398 (890)
Q Consensus 391 --GRGTDIkL 398 (890)
.-+.|+.+
T Consensus 82 ~~~~~~~vLi 91 (137)
T PF04364_consen 82 NPNNHADVLI 91 (137)
T ss_dssp ---S--SEEE
T ss_pred CCCCCCCEEE
Confidence 34456544
No 123
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=69.77 E-value=9.4 Score=38.56 Aligned_cols=80 Identities=24% Similarity=0.279 Sum_probs=58.8
Q ss_pred EEeChhHHHH-HHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHh----CCCCceEeccCCcchhhHHHHHHhcCCCCc
Q 002707 308 SFATARGKWE-YARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLNARPKYAAREAETVAQAGRKYA 382 (890)
Q Consensus 308 i~~t~~~k~~-AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~----~gi~h~vLNA~~k~~~~EA~IIa~AG~~G~ 382 (890)
+|...+++.. +++.-+.++...|..|||-|.|.++.+.|-+.|-. .-|||++.-- + ..+++|
T Consensus 6 FY~l~~~~~~~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~e-----~------~~~~qP-- 72 (144)
T COG2927 6 FYLLSESTLLAAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAGE-----P------PPAGQP-- 72 (144)
T ss_pred EEEecchhHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCCC-----C------CCCCCC--
Confidence 5666667776 78888889999999999999999999999999965 4689976321 1 135566
Q ss_pred EEEEc---CCCCCCcceecCC
Q 002707 383 ITIST---NMAGRGTDIILGG 400 (890)
Q Consensus 383 VTIAT---NMAGRGTDIkLgg 400 (890)
|-|++ |=.++-.|+.+.+
T Consensus 73 Ili~~~~~~pn~~~~~~lInl 93 (144)
T COG2927 73 ILIAWPGGNPNSARVDLLINL 93 (144)
T ss_pred EEEEcCCCCCCCCceeEEEec
Confidence 77766 4445555666654
No 124
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=69.70 E-value=29 Score=43.24 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=85.5
Q ss_pred hhHHhhcCccccccCCchhH--HHHHHhhhCCC------eEEcCCCCCcc---cccCCCcEE--eChhHHHHHHHHHHHH
Q 002707 259 QSLFKLYPKLSGMTGTAKTE--EKEFLKMFQMP------VIEVPTNLPNI---RVDLPIQSF--ATARGKWEYARQEVES 325 (890)
Q Consensus 259 q~~Fr~Y~kL~GmTGTa~te--~~Ef~~iY~l~------vv~IPt~kp~~---R~d~pd~i~--~t~~~k~~AIi~ei~~ 325 (890)
..+|+.+.....||||+.+. -.-|.+.-|++ .+.+|+..+-. ..-.|+..+ .+.++...++++.|.+
T Consensus 450 ~~l~~~~~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~ 529 (697)
T PRK11747 450 RLLWSRAPGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPE 529 (697)
T ss_pred HHHHhhCCEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHH
Confidence 45667777888899999753 23455556764 45677655431 112233221 2455666788888877
Q ss_pred hhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHH----Hh--cCCCCcEEEEcCCCCCCccee
Q 002707 326 MFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETV----AQ--AGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 326 ~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~II----a~--AG~~G~VTIATNMAGRGTDIk 397 (890)
....+.-+||.++|-+.-+.+++.|... ....+|--. . ..++ .++ +. +| .++|.++|.-..=|.|+.
T Consensus 530 l~~~~gg~LVlFtSy~~l~~v~~~l~~~-~~~~ll~Q~-~-~~~~-~ll~~f~~~~~~~-~~~VL~g~~sf~EGVD~p 602 (697)
T PRK11747 530 LLEKHKGSLVLFASRRQMQKVADLLPRD-LRLMLLVQG-D-QPRQ-RLLEKHKKRVDEG-EGSVLFGLQSFAEGLDLP 602 (697)
T ss_pred HHhcCCCEEEEeCcHHHHHHHHHHHHHh-cCCcEEEeC-C-chHH-HHHHHHHHHhccC-CCeEEEEeccccccccCC
Confidence 6655545899999999999999999753 223444332 1 1222 344 22 34 578999998889999996
No 125
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=69.02 E-value=5.9 Score=47.49 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=66.7
Q ss_pred cCCeeeccc----ceeccchhhhccHHHHHHHHHHhCCccccccCCCC--HHHHhhccCCCCeeecCcchhhhHHhhhcc
Q 002707 16 DGSIAEMKT----VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLA 89 (890)
Q Consensus 16 ~G~IaEMkT----VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~--~~~rr~aY~~DItYgT~~efgFDyLRD~~~ 89 (890)
.+....|+. |+..-.-||..=......+-.-|++.+.|+..+.+ ++.+.--..+||+=+|..- |.|.|.
T Consensus 157 ~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGR-----l~d~le 231 (519)
T KOG0331|consen 157 QGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGR-----LIDLLE 231 (519)
T ss_pred cccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChH-----HHHHHH
Confidence 466666655 77777888887777777777778887777766543 6667777889999999985 456554
Q ss_pred cCcchhcccCCCCcceEEeccCCeee
Q 002707 90 ANSEQLVMRWPKPFHFAIVDEVDSVL 115 (890)
Q Consensus 90 ~~~~~~v~r~~R~~~~aIVDEvDSiL 115 (890)
.. ...++ .+.|+++||||-||
T Consensus 232 ~g--~~~l~---~v~ylVLDEADrMl 252 (519)
T KOG0331|consen 232 EG--SLNLS---RVTYLVLDEADRML 252 (519)
T ss_pred cC--Ccccc---ceeEEEeccHHhhh
Confidence 32 24456 89999999999998
No 126
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=66.85 E-value=46 Score=42.98 Aligned_cols=137 Identities=17% Similarity=0.100 Sum_probs=84.7
Q ss_pred hhHHhhcCccccccCCchhHH--HHHHhhhCCC-----eEEcCCCCCc---ccc----cCCCcEEeChhHHHHHHHHHHH
Q 002707 259 QSLFKLYPKLSGMTGTAKTEE--KEFLKMFQMP-----VIEVPTNLPN---IRV----DLPIQSFATARGKWEYARQEVE 324 (890)
Q Consensus 259 q~~Fr~Y~kL~GmTGTa~te~--~Ef~~iY~l~-----vv~IPt~kp~---~R~----d~pd~i~~t~~~k~~AIi~ei~ 324 (890)
+.+|........+|||+.... .-|.+..|++ ...+|+..+- .+. |.|+.-..+.++-..++++.|.
T Consensus 666 ~~l~~~~~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~ 745 (928)
T PRK08074 666 DEFFAKKKSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIA 745 (928)
T ss_pred HHHHhcCCcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHH
Confidence 445566677888889887522 3345666764 4567664332 111 2332212334455568888887
Q ss_pred Hhh-hCCCcEEEEecchhhHHHHHHHHHhCCCC--ceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCCCCCCccee
Q 002707 325 SMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIP--HNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 325 ~~~-~~grPVLIgt~sI~~SE~ls~~L~~~gi~--h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNMAGRGTDIk 397 (890)
+.. ..+.++||.++|-+.-+.+++.|+..... ..+|.-......+ ..+++ +.| .++|-++|.-..-|.|+.
T Consensus 746 ~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r-~~l~~~F~~~-~~~iLlG~~sFwEGVD~p 821 (928)
T PRK08074 746 KIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSR-ARLTKQFQQF-DKAILLGTSSFWEGIDIP 821 (928)
T ss_pred HHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCH-HHHHHHHHhc-CCeEEEecCcccCccccC
Confidence 765 46669999999999999999999865431 2344321011122 23444 223 578999999999999986
No 127
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=66.76 E-value=6.8 Score=46.40 Aligned_cols=82 Identities=21% Similarity=0.347 Sum_probs=64.3
Q ss_pred ceeccchhhhccHHHHHHHHHHh-CCccccccCCC--CHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCC
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFL-GLSVGLIQRGM--IPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPK 101 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~L-GLsvg~i~~~~--~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R 101 (890)
||..-.-||-+=+.+...+..+. +++|+.+..+. ..++.+-+=.|.|.-.|..-| -|++...+. .+.|
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRL-----lDHlqNt~~-f~~r--- 229 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRL-----LDHLQNTSG-FLFR--- 229 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchH-----HhHhhcCCc-chhh---
Confidence 88888999999999999999999 99999876643 344444444999999999965 466654433 4556
Q ss_pred CcceEEeccCCeee
Q 002707 102 PFHFAIVDEVDSVL 115 (890)
Q Consensus 102 ~~~~aIVDEvDSiL 115 (890)
...+.|+||||.+|
T Consensus 230 ~~k~lvlDEADrlL 243 (543)
T KOG0342|consen 230 NLKCLVLDEADRLL 243 (543)
T ss_pred ccceeEeecchhhh
Confidence 78899999999876
No 128
>PRK02362 ski2-like helicase; Provisional
Probab=65.03 E-value=7 Score=48.72 Aligned_cols=83 Identities=23% Similarity=0.207 Sum_probs=52.4
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcc
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFH 104 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~ 104 (890)
+|+....||..=++.+..+ .-+|++|+..+.+.+...+. .=.+||+-+|...+ |.|-.+- ..... .+.
T Consensus 72 ~i~P~raLa~q~~~~~~~~-~~~g~~v~~~tGd~~~~~~~-l~~~~IiV~Tpek~--~~llr~~-----~~~l~---~v~ 139 (737)
T PRK02362 72 YIVPLRALASEKFEEFERF-EELGVRVGISTGDYDSRDEW-LGDNDIIVATSEKV--DSLLRNG-----APWLD---DIT 139 (737)
T ss_pred EEeChHHHHHHHHHHHHHh-hcCCCEEEEEeCCcCccccc-cCCCCEEEECHHHH--HHHHhcC-----hhhhh---hcC
Confidence 7788888988655555543 23599999887766543221 12469999998864 4442111 11234 789
Q ss_pred eEEeccCCeeeecCCC
Q 002707 105 FAIVDEVDSVLIDEGR 120 (890)
Q Consensus 105 ~aIVDEvDSiLIDeAr 120 (890)
++||||+|-++ |..|
T Consensus 140 lvViDE~H~l~-d~~r 154 (737)
T PRK02362 140 CVVVDEVHLID-SANR 154 (737)
T ss_pred EEEEECccccC-CCcc
Confidence 99999999653 4433
No 129
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=64.27 E-value=7.2 Score=47.89 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=64.5
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHHHHhhccC------CCCeeecCcchhhhHHhhhcccCcchhccc
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------CDITYTNNSELGFDYLRDNLAANSEQLVMR 98 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~rr~aY~------~DItYgT~~efgFDyLRD~~~~~~~~~v~r 98 (890)
+.-.-+-||+.=++...+++.-|||.|+..+..+...+|++... .||+=||..=|+ |... -.
T Consensus 316 LMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-----d~V~-------F~ 383 (677)
T COG1200 316 LMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-----DKVE-------FH 383 (677)
T ss_pred EeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-----ccee-------ec
Confidence 44456889999999999999999999999999999999987773 699999998654 3322 23
Q ss_pred CCCCcceEEeccCCe-------eeecCCC-Cc
Q 002707 99 WPKPFHFAIVDEVDS-------VLIDEGR-NP 122 (890)
Q Consensus 99 ~~R~~~~aIVDEvDS-------iLIDeAr-tp 122 (890)
.+.++||||=-. .|...+. +|
T Consensus 384 ---~LgLVIiDEQHRFGV~QR~~L~~KG~~~P 412 (677)
T COG1200 384 ---NLGLVIIDEQHRFGVHQRLALREKGEQNP 412 (677)
T ss_pred ---ceeEEEEeccccccHHHHHHHHHhCCCCC
Confidence 688999999542 4555555 44
No 130
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=63.18 E-value=58 Score=40.60 Aligned_cols=61 Identities=26% Similarity=0.319 Sum_probs=47.2
Q ss_pred HHHHHHHHHH-HHhhhCCC--cEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH
Q 002707 314 GKWEYARQEV-ESMFRLGR--PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA 375 (890)
Q Consensus 314 ~k~~AIi~ei-~~~~~~gr--PVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa 375 (890)
.|..++.+-+ ......|. +|||++..+..-..+...|...++++.-+.+... ..+-.++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~-~~~r~~~i~ 755 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTP-AKRRQELID 755 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCC-hhhHHHHHH
Confidence 6676666666 56778999 9999999999999999999999988888887532 223334554
No 131
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=62.67 E-value=12 Score=44.34 Aligned_cols=83 Identities=22% Similarity=0.310 Sum_probs=64.0
Q ss_pred ceeccchhhhccHHHHHHHHHH-hCCccccccCCCCHHHHhhcc---CCCCeeecCcchhhhHHhhhcccCcchhcccCC
Q 002707 25 VVTVNDYLAQRDAEWMERVHRF-LGLSVGLIQRGMIPEERRSNY---RCDITYTNNSELGFDYLRDNLAANSEQLVMRWP 100 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~-LGLsvg~i~~~~~~~~rr~aY---~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~ 100 (890)
|||...-||..=.+-.+||-+- +.|++-+...+.+.++=-+.+ .+.|.-||.+-+ +|.+...+. .+-.|
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL-~di~~~~~~----~l~~r-- 156 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRL-LDILQREAE----KLSFR-- 156 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhH-HHHHhchhh----hcccc--
Confidence 9999999999888888999865 888888888888776544444 468999999976 455544332 23356
Q ss_pred CCcceEEeccCCeee
Q 002707 101 KPFHFAIVDEVDSVL 115 (890)
Q Consensus 101 R~~~~aIVDEvDSiL 115 (890)
.+.++|+||+|..|
T Consensus 157 -sLe~LVLDEADrLl 170 (567)
T KOG0345|consen 157 -SLEILVLDEADRLL 170 (567)
T ss_pred -ccceEEecchHhHh
Confidence 99999999999855
No 132
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=62.43 E-value=3.6 Score=44.87 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=30.3
Q ss_pred chhhhHHhhhcccCcchhcccCCCCcceEEeccCCeee
Q 002707 78 ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 115 (890)
Q Consensus 78 efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiL 115 (890)
|=|.|-.|.........+|.-++..+..+|+||+|||-
T Consensus 89 eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 89 ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 45889999887665566777666678999999999985
No 133
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=62.14 E-value=8.5 Score=37.48 Aligned_cols=78 Identities=27% Similarity=0.315 Sum_probs=42.6
Q ss_pred ceeccchhhhccHHHHHHHHHHhC----CccccccCCCCHHHHhhccC-C-CCeeecCcchhhhHHhhhcccCcchhccc
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLG----LSVGLIQRGMIPEERRSNYR-C-DITYTNNSELGFDYLRDNLAANSEQLVMR 98 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LG----Lsvg~i~~~~~~~~rr~aY~-~-DItYgT~~efgFDyLRD~~~~~~~~~v~r 98 (890)
+++.+..++. +|...+..++. ..+.........+....... + +|+++|...+. +.+.... ...+
T Consensus 59 ~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~-----~~~~~~~--~~~~ 128 (201)
T smart00487 59 VLVPTRELAE---QWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLL-----DLLENDL--LELS 128 (201)
T ss_pred EEeCCHHHHH---HHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHH-----HHHHcCC--cCHh
Confidence 6677777777 45555555552 33333333222332222333 2 89999876443 3222211 2233
Q ss_pred CCCCcceEEeccCCeee
Q 002707 99 WPKPFHFAIVDEVDSVL 115 (890)
Q Consensus 99 ~~R~~~~aIVDEvDSiL 115 (890)
++.++||||++.+-
T Consensus 129 ---~~~~iIiDE~h~~~ 142 (201)
T smart00487 129 ---NVDLVILDEAHRLL 142 (201)
T ss_pred ---HCCEEEEECHHHHh
Confidence 68899999998876
No 134
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=61.38 E-value=58 Score=39.52 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=22.9
Q ss_pred hhhhcccccCCCCCceEEEEe-cCchhhhhc
Q 002707 552 NQLRGRAGRQGDPGSTRFMVS-LQDEMFQKF 581 (890)
Q Consensus 552 ~QLrGRaGRQGDPGss~f~lS-LeD~l~~~f 581 (890)
-.+.||++|-|-.|++-.||- -|-+.++..
T Consensus 532 lHRvGRTARaG~kG~alLfL~P~Eaey~~~l 562 (708)
T KOG0348|consen 532 LHRVGRTARAGEKGEALLFLLPSEAEYVNYL 562 (708)
T ss_pred HHHhhhhhhccCCCceEEEecccHHHHHHHH
Confidence 456799999999999999983 455555543
No 135
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=59.78 E-value=26 Score=44.85 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhh--CCCcEEEEecchhhHHHHHHHHHhCCCC-----ceE--eccCCcchhhHHHHHHhcCCC--CcEE
Q 002707 316 WEYARQEVESMFR--LGRPVLVGSTSVENSEYLSDLLKQQGIP-----HNV--LNARPKYAAREAETVAQAGRK--YAIT 384 (890)
Q Consensus 316 ~~AIi~ei~~~~~--~grPVLIgt~sI~~SE~ls~~L~~~gi~-----h~v--LNA~~k~~~~EA~IIa~AG~~--G~VT 384 (890)
+..|.+-+.-.++ ..-+|||+-+..++-..+.+.|.....- .-+ |... -...|..-|..-=.+ -.|.
T Consensus 397 ~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~--~~s~eQ~~VF~~pp~g~RKII 474 (924)
T KOG0920|consen 397 YDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSS--IPSEEQQAVFKRPPKGTRKII 474 (924)
T ss_pred HHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEecccc--CChHHHHHhcCCCCCCcchhh
Confidence 4444444433333 3467999999999999999998753211 111 2221 122344444433223 3799
Q ss_pred EEcCCCCCCcceec
Q 002707 385 ISTNMAGRGTDIIL 398 (890)
Q Consensus 385 IATNMAGRGTDIkL 398 (890)
+|||+|= |.|.+
T Consensus 475 laTNIAE--TSITI 486 (924)
T KOG0920|consen 475 LATNIAE--TSITI 486 (924)
T ss_pred hhhhhHh--hcccc
Confidence 9999984 55544
No 136
>PRK00254 ski2-like helicase; Provisional
Probab=59.77 E-value=14 Score=45.90 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=51.0
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcc
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFH 104 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~ 104 (890)
+|+....||..=++.+.. |.-+|++|+..+.+.+...+. .=.+||+-+|...|- .++|.+ . ...+ .+.
T Consensus 73 ~l~P~~aLa~q~~~~~~~-~~~~g~~v~~~~Gd~~~~~~~-~~~~~IiV~Tpe~~~-~ll~~~-----~-~~l~---~l~ 140 (720)
T PRK00254 73 YLVPLKALAEEKYREFKD-WEKLGLRVAMTTGDYDSTDEW-LGKYDIIIATAEKFD-SLLRHG-----S-SWIK---DVK 140 (720)
T ss_pred EEeChHHHHHHHHHHHHH-HhhcCCEEEEEeCCCCCchhh-hccCCEEEEcHHHHH-HHHhCC-----c-hhhh---cCC
Confidence 666777788755555555 345799999887766543222 224699999987652 233321 1 1234 789
Q ss_pred eEEeccCCeee
Q 002707 105 FAIVDEVDSVL 115 (890)
Q Consensus 105 ~aIVDEvDSiL 115 (890)
++||||+|.+.
T Consensus 141 lvViDE~H~l~ 151 (720)
T PRK00254 141 LVVADEIHLIG 151 (720)
T ss_pred EEEEcCcCccC
Confidence 99999999763
No 137
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=59.29 E-value=31 Score=39.74 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHhcCCCCcEEEEc--CCC
Q 002707 313 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITIST--NMA 390 (890)
Q Consensus 313 ~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIAT--NMA 390 (890)
-+|+.+++++.++..+.|.||||==.... ..|++.||+.+++....+--..=++-|.+||-+ .|.|+| |-+
T Consensus 7 ~~~~~~~~~~l~~~~~~~~~ilveg~~d~------~~l~~lgi~g~~i~~s~~p~~~cad~ii~~gi~-rVVi~~D~d~~ 79 (360)
T PRK14719 7 LEKLLLIIDDLKLLAEKGIPILVEGPNDI------LSLKNLKINANFITVSNTPVFQIADDLIAENIS-EVILLTDFDRA 79 (360)
T ss_pred HHHHHHHHHHHHHhhhCCCEEEEEcchHH------HHHHHcCCCCcEEEEeCCchHHHHHHHHHcCCC-EEEEEECCCCC
Confidence 36788899999998899999999665554 358899998777654212112235556678855 899999 568
Q ss_pred CCC
Q 002707 391 GRG 393 (890)
Q Consensus 391 GRG 393 (890)
|||
T Consensus 80 G~~ 82 (360)
T PRK14719 80 GRV 82 (360)
T ss_pred CCc
Confidence 888
No 138
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=59.12 E-value=36 Score=34.01 Aligned_cols=52 Identities=25% Similarity=0.227 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhC----CCCceEecc
Q 002707 311 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNA 362 (890)
Q Consensus 311 t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~----gi~h~vLNA 362 (890)
+...+...++.-+.+..++|.-|+|.|.+.+.++.|-+.|-.. -|||.+...
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~ 65 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGE 65 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCC
Confidence 5677888899999999999999999999999999999999763 589987543
No 139
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=58.02 E-value=19 Score=40.22 Aligned_cols=71 Identities=24% Similarity=0.432 Sum_probs=43.5
Q ss_pred cccccCCchhH-HHHHHhhhCCCeE-----------EcCCCCCccc----cc-------CCCcEEeChhHHHHHHHHHHH
Q 002707 268 LSGMTGTAKTE-EKEFLKMFQMPVI-----------EVPTNLPNIR----VD-------LPIQSFATARGKWEYARQEVE 324 (890)
Q Consensus 268 L~GmTGTa~te-~~Ef~~iY~l~vv-----------~IPt~kp~~R----~d-------~pd~i~~t~~~k~~AIi~ei~ 324 (890)
++|.||+.+|. +.++.+.++..++ .|-|++|..- +. .|...| +.........+.|.
T Consensus 4 i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~-~v~~f~~~a~~~i~ 82 (287)
T TIGR00174 4 IMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESY-SAADFQTLALNAIA 82 (287)
T ss_pred EECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheE-cHHHHHHHHHHHHH
Confidence 68999999985 5667777775544 4567787632 12 233333 33444444555666
Q ss_pred HhhhCCC-cEEEEecc
Q 002707 325 SMFRLGR-PVLVGSTS 339 (890)
Q Consensus 325 ~~~~~gr-PVLIgt~s 339 (890)
+.+++|+ |||||=+.
T Consensus 83 ~~~~~g~~pi~vGGTg 98 (287)
T TIGR00174 83 DITARGKIPLLVGGTG 98 (287)
T ss_pred HHHhCCCCEEEEcCcH
Confidence 6677775 88887543
No 140
>PRK10689 transcription-repair coupling factor; Provisional
Probab=57.72 E-value=9 Score=50.30 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=55.7
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHHHHhhcc------CCCCeeecCcchhhhHHhhhcccCcchhccc
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMR 98 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~rr~aY------~~DItYgT~~efgFDyLRD~~~~~~~~~v~r 98 (890)
|++....||..=++.+...|..+++++++.....+..++++.. .+||+.||.. .|+..+ ...
T Consensus 654 vLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~-----lL~~~v-------~~~ 721 (1147)
T PRK10689 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHK-----LLQSDV-------KWK 721 (1147)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHH-----HHhCCC-------CHh
Confidence 7888899999888888877877889998887777766665433 4699999983 232111 123
Q ss_pred CCCCcceEEeccCCee
Q 002707 99 WPKPFHFAIVDEVDSV 114 (890)
Q Consensus 99 ~~R~~~~aIVDEvDSi 114 (890)
.+.++||||+|.+
T Consensus 722 ---~L~lLVIDEahrf 734 (1147)
T PRK10689 722 ---DLGLLIVDEEHRF 734 (1147)
T ss_pred ---hCCEEEEechhhc
Confidence 7899999999985
No 141
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=56.76 E-value=8 Score=51.83 Aligned_cols=82 Identities=21% Similarity=0.157 Sum_probs=56.5
Q ss_pred ceeccchhhhccHHHHHHHH------------HHhCCccccccCCCCHHHHhhcc--CCCCeeecCcchhhhHHhhhccc
Q 002707 25 VVTVNDYLAQRDAEWMERVH------------RFLGLSVGLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAA 90 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y------------~~LGLsvg~i~~~~~~~~rr~aY--~~DItYgT~~efgFDyLRD~~~~ 90 (890)
+||.-.-||.-=...+...+ ..+|++|+..+.+.+..+|++.. .+||+-+|...|- +.|+.+
T Consensus 42 YISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~-~LLtsk--- 117 (1490)
T PRK09751 42 YISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLY-LMLTSR--- 117 (1490)
T ss_pred EEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHH-HHHhhh---
Confidence 77777778764333333211 12589999999898888876554 4699999999874 234321
Q ss_pred CcchhcccCCCCcceEEeccCCeee
Q 002707 91 NSEQLVMRWPKPFHFAIVDEVDSVL 115 (890)
Q Consensus 91 ~~~~~v~r~~R~~~~aIVDEvDSiL 115 (890)
.....+ .+.++||||+|.++
T Consensus 118 --~r~~L~---~Vr~VIVDE~H~L~ 137 (1490)
T PRK09751 118 --ARETLR---GVETVIIDEVHAVA 137 (1490)
T ss_pred --hhhhhc---cCCEEEEecHHHhc
Confidence 112455 89999999999998
No 142
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=55.85 E-value=30 Score=45.46 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=65.3
Q ss_pred cCCeeEEEeechhHHhh-----cCccccccCCchhH--HHHHHhhhCCCe-EEcCCCCCcccccCCCcEE-eChhHHHH-
Q 002707 248 ADSVVVAQITYQSLFKL-----YPKLSGMTGTAKTE--EKEFLKMFQMPV-IEVPTNLPNIRVDLPIQSF-ATARGKWE- 317 (890)
Q Consensus 248 ~e~~t~a~IT~q~~Fr~-----Y~kL~GmTGTa~te--~~Ef~~iY~l~v-v~IPt~kp~~R~d~pd~i~-~t~~~k~~- 317 (890)
.....+.+|.--.+-+. +.++-|+|+|+..- ..-|..+.--.. ..=|+++|+--+..=.-|- ++...+++
T Consensus 452 dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qa 531 (1674)
T KOG0951|consen 452 DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQA 531 (1674)
T ss_pred ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHH
Confidence 34456677776666666 67999999999863 344655433222 2346777773322211111 11122222
Q ss_pred ---HHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEec
Q 002707 318 ---YARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 361 (890)
Q Consensus 318 ---AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLN 361 (890)
+..+.|.+...+ -+|||+..|-++.-..++.++..-.....|.
T Consensus 532 mNe~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls 577 (1674)
T KOG0951|consen 532 MNEACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLS 577 (1674)
T ss_pred HHHHHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHH
Confidence 455566654444 8999999999887777777765444433333
No 143
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=54.24 E-value=56 Score=39.22 Aligned_cols=149 Identities=23% Similarity=0.285 Sum_probs=88.1
Q ss_pred eEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhh-CCCeE
Q 002707 213 KALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF-QMPVI 291 (890)
Q Consensus 213 ~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY-~l~vv 291 (890)
.|+|+|+..-|....-....=|.+.+-.|-.+ |+.-||.|+- +..|...| |.+++
T Consensus 161 ~viiLDeahERtlATDiLmGllk~v~~~rpdL----------------------k~vvmSatl~--a~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 161 GVIILDEAHERTLATDILMGLLKEVVRNRPDL----------------------KLVVMSATLD--AEKFQRYFGNAPLL 216 (699)
T ss_pred cEEEechhhhhhHHHHHHHHHHHHHHhhCCCc----------------------eEEEeecccc--hHHHHHHhCCCCee
Confidence 58888986666555444444444444443222 5677888884 44577766 78899
Q ss_pred EcCCCCCcccccCCCcEEeCh--hHHHHHHHHHHHHhhhCCCc--EEEEecchhhHHHHHHHHHhC-------CCCceEe
Q 002707 292 EVPTNLPNIRVDLPIQSFATA--RGKWEYARQEVESMFRLGRP--VLVGSTSVENSEYLSDLLKQQ-------GIPHNVL 360 (890)
Q Consensus 292 ~IPt~kp~~R~d~pd~i~~t~--~~k~~AIi~ei~~~~~~grP--VLIgt~sI~~SE~ls~~L~~~-------gi~h~vL 360 (890)
.||--.|+-+ +|..+ .+.+.|.+.-|.+.|..+-| |||+-+.-++-|...+.+..+ +-|..|+
T Consensus 217 ~vpg~~PvEi------~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~ 290 (699)
T KOG0925|consen 217 AVPGTHPVEI------FYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVV 290 (699)
T ss_pred ecCCCCceEE------EecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEE
Confidence 9996556533 34433 44567999999988865544 899988887766555555432 2344444
Q ss_pred ccCCcchhh--HHHHHHhcCCC-CcEEEEcCCCC
Q 002707 361 NARPKYAAR--EAETVAQAGRK-YAITISTNMAG 391 (890)
Q Consensus 361 NA~~k~~~~--EA~IIa~AG~~-G~VTIATNMAG 391 (890)
--.|+..-+ |+.=...-|.. ..|.|+||+|-
T Consensus 291 PLyP~~qq~iFep~p~~~~~~~~RkvVvstniae 324 (699)
T KOG0925|consen 291 PLYPAQQQRIFEPAPEKRNGAYGRKVVVSTNIAE 324 (699)
T ss_pred ecCchhhccccCCCCcccCCCccceEEEEecchh
Confidence 332211111 11111222434 36999999984
No 144
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=52.54 E-value=40 Score=32.58 Aligned_cols=108 Identities=12% Similarity=0.186 Sum_probs=62.4
Q ss_pred cccccCCchhHH-HHHHhhhCCCeEEc--CCCCCcccc---------cCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEE
Q 002707 268 LSGMTGTAKTEE-KEFLKMFQMPVIEV--PTNLPNIRV---------DLPIQSFATARGKWEYARQEVESMFRLGRPVLV 335 (890)
Q Consensus 268 L~GmTGTa~te~-~Ef~~iY~l~vv~I--Pt~kp~~R~---------d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLI 335 (890)
+.|.||-.|... +.+.+..++.++-+ +...+..=+ ..+..++.+ +.+++++ -=|+|
T Consensus 5 i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~----l~~~~~~--------~DVvI 72 (124)
T PF01113_consen 5 IVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDD----LEELLEE--------ADVVI 72 (124)
T ss_dssp EETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-----HHHHTTH---------SEEE
T ss_pred EECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchh----HHHhccc--------CCEEE
Confidence 578888888764 55666678876533 333122211 222233322 2333322 22888
Q ss_pred EecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHHhcCCCCcEEEEcCC
Q 002707 336 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNM 389 (890)
Q Consensus 336 gt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIATNM 389 (890)
-+++.+.+....+.+.++|+|.-+=+.. ...++-+.+.++.+.-.|.+|.||
T Consensus 73 DfT~p~~~~~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~~a~~~~vl~a~Nf 124 (124)
T PF01113_consen 73 DFTNPDAVYDNLEYALKHGVPLVIGTTG--FSDEQIDELEELAKKIPVLIAPNF 124 (124)
T ss_dssp EES-HHHHHHHHHHHHHHT-EEEEE-SS--SHHHHHHHHHHHTTTSEEEE-SSS
T ss_pred EcCChHHhHHHHHHHHhCCCCEEEECCC--CCHHHHHHHHHHhccCCEEEeCCC
Confidence 8888888888888888888876553432 344555667777777899999998
No 145
>PLN02229 alpha-galactosidase
Probab=52.10 E-value=69 Score=37.90 Aligned_cols=124 Identities=10% Similarity=0.093 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhcccCcceEEeCCeEE--EEeCCCCccccCc-ccCchHHHHHHhHh------CCccccCCeeEEEee
Q 002707 187 WARFVMNALKAKEFYRRDVQYIVRNGKAL--IINELTGRVEEKR-RWSEGIHQAVEAKE------GLKIQADSVVVAQIT 257 (890)
Q Consensus 187 ~~~~i~~Al~A~~l~~~d~dYiV~dg~I~--iVD~~TGR~~~gr-~ws~GLHQalEaKE------gv~It~e~~t~a~IT 257 (890)
...-.-.|+.+..+-.-+-+||+-|+-=. --| ..|+++++. +|.+|+.-....-| |+-..+...|.+
T Consensus 81 ~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd-~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~--- 156 (427)
T PLN02229 81 VIKETADALVSTGLADLGYIHVNIDDCWSNLKRD-SKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQ--- 156 (427)
T ss_pred HHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcC-CCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccC---
Confidence 33444556666777778999999875211 123 369999975 79999988877644 565666666554
Q ss_pred chhHHhhcCccccccCCchhHHH--HHHhhhCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEE
Q 002707 258 YQSLFKLYPKLSGMTGTAKTEEK--EFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV 335 (890)
Q Consensus 258 ~q~~Fr~Y~kL~GmTGTa~te~~--Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLI 335 (890)
|.+|+.+-|+. +...-.|+|++.+=---. +.. ...+.+.++-+.+ .+.||||+.
T Consensus 157 ------------~~pGS~g~e~~DA~~fA~WGVDylK~D~C~~-------~~~--~~~~~y~~m~~AL---~~tGRpI~~ 212 (427)
T PLN02229 157 ------------VRPGSLFHEVDDADIFASWGVDYLKYDNCYN-------LGI--KPIERYPPMRDAL---NATGRSIFY 212 (427)
T ss_pred ------------CCCCCccHHHHHHHHHHHcCCCEEEecCCCC-------CCc--chhHHHHHHHHHH---HhhCCCcEE
Confidence 56788887653 334558999998721100 000 1234455554444 357999877
Q ss_pred E-ec
Q 002707 336 G-ST 338 (890)
Q Consensus 336 g-t~ 338 (890)
- |+
T Consensus 213 SlC~ 216 (427)
T PLN02229 213 SLCE 216 (427)
T ss_pred EecC
Confidence 5 65
No 146
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=49.54 E-value=1.2e+02 Score=37.12 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=42.6
Q ss_pred CCchhHHHHHHhhhCCCe---EEc---CCCCCcccccCCCcEEeChhHHHHHHHHH---HHHhhhCCCcEEEEecchhhH
Q 002707 273 GTAKTEEKEFLKMFQMPV---IEV---PTNLPNIRVDLPIQSFATARGKWEYARQE---VESMFRLGRPVLVGSTSVENS 343 (890)
Q Consensus 273 GTa~te~~Ef~~iY~l~v---v~I---Pt~kp~~R~d~pd~i~~t~~~k~~AIi~e---i~~~~~~grPVLIgt~sI~~S 343 (890)
.|.++-.+-..+.+|+.- +.+ ||-..-.-...|+..=.++.+|-..|++. ..++...|--.+-+|.+-.-+
T Consensus 459 ~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~C 538 (1034)
T KOG4150|consen 459 TPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLC 538 (1034)
T ss_pred CCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHH
Confidence 344443333344555543 333 44433334455554444455554444432 345677899999999998888
Q ss_pred HHHHH
Q 002707 344 EYLSD 348 (890)
Q Consensus 344 E~ls~ 348 (890)
|.+-.
T Consensus 539 EL~~~ 543 (1034)
T KOG4150|consen 539 ELVLC 543 (1034)
T ss_pred HHHHH
Confidence 87643
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=48.92 E-value=47 Score=40.74 Aligned_cols=81 Identities=20% Similarity=0.105 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhh-hCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCCC
Q 002707 314 GKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMA 390 (890)
Q Consensus 314 ~k~~AIi~ei~~~~-~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNMA 390 (890)
+-+.+++..+.+.. ..+..+||.++|-+..+.+.+.|+.......++... ..+.+ ++++ .++..+.+.|+|.=.
T Consensus 462 ~~~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~--~~~~~-~~l~~f~~~~~~~~lv~~gsf 538 (654)
T COG1199 462 ELLAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQG--EDERE-ELLEKFKASGEGLILVGGGSF 538 (654)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecC--CCcHH-HHHHHHHHhcCCeEEEeeccc
Confidence 33444444444332 234489999999999999999999987654555542 23444 3444 233233899999999
Q ss_pred CCCccee
Q 002707 391 GRGTDII 397 (890)
Q Consensus 391 GRGTDIk 397 (890)
--|.|+.
T Consensus 539 ~EGVD~~ 545 (654)
T COG1199 539 WEGVDFP 545 (654)
T ss_pred cCcccCC
Confidence 9999997
No 148
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=48.91 E-value=56 Score=41.78 Aligned_cols=119 Identities=24% Similarity=0.238 Sum_probs=71.5
Q ss_pred CccccccCCchhHHHHHHhhhC-CCeEEcCCC-CCcccccCCCcEEeChhH-HHHHHHHHHHHhhhC-CCcEEEEecchh
Q 002707 266 PKLSGMTGTAKTEEKEFLKMFQ-MPVIEVPTN-LPNIRVDLPIQSFATARG-KWEYARQEVESMFRL-GRPVLVGSTSVE 341 (890)
Q Consensus 266 ~kL~GmTGTa~te~~Ef~~iY~-l~vv~IPt~-kp~~R~d~pd~i~~t~~~-k~~AIi~ei~~~~~~-grPVLIgt~sI~ 341 (890)
-|+--||.|+.++. |.+.++ .+|+.||-- .|+...-.++.- .+. -..+++.-|...... .=.|||+-+-..
T Consensus 196 LKiIimSATld~~r--fs~~f~~apvi~i~GR~fPVei~Y~~~~~---~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 196 LKLIIMSATLDAER--FSAYFGNAPVIEIEGRTYPVEIRYLPEAE---ADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred ceEEEEecccCHHH--HHHHcCCCCEEEecCCccceEEEecCCCC---cchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 37888999997654 887776 899999854 355333222211 222 233555555444333 357999999999
Q ss_pred hHHHHHHHHHhCCC-C-ceE--eccCCcchhhHH-HHHHhcCCC-CcEEEEcCCCC
Q 002707 342 NSEYLSDLLKQQGI-P-HNV--LNARPKYAAREA-ETVAQAGRK-YAITISTNMAG 391 (890)
Q Consensus 342 ~SE~ls~~L~~~gi-~-h~v--LNA~~k~~~~EA-~IIa~AG~~-G~VTIATNMAG 391 (890)
+-+...+.|.+... + ..| |.+. -...|. .|+.-+... -.|.+|||.|=
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~--L~~~eQ~rvF~p~~~~~RKVVlATNIAE 324 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGA--LSAEEQVRVFEPAPGGKRKVVLATNIAE 324 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeecccc--CCHHHHHhhcCCCCCCcceEEEEccccc
Confidence 99999999988333 1 222 3332 112222 255433222 22999999985
No 149
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=48.18 E-value=36 Score=35.25 Aligned_cols=54 Identities=17% Similarity=0.098 Sum_probs=47.4
Q ss_pred cCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCC
Q 002707 303 DLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP 356 (890)
Q Consensus 303 d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~ 356 (890)
+|--.+|.+.++.+..++.-+.+-.+.|.+||+++.+....+.+.+.|.+.|+.
T Consensus 20 ~H~c~~Y~~~~e~~~~~~~Fi~~GL~~ge~~l~v~~~~~~~~~l~~~L~~~~~d 73 (191)
T PF14417_consen 20 DHICAFYDDEEELLEVLVPFIREGLARGERCLYVAPDPRRVEELRDELRKAGPD 73 (191)
T ss_pred ceEEEEECCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHhcCCc
Confidence 455578999999999999999999999999999999877888999999887664
No 150
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=47.89 E-value=17 Score=46.00 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCccccccCCCCHHHHhhccCC--CCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCee
Q 002707 37 AEWMERVHRFLGLSVGLIQRGMIPEERRSNYRC--DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 114 (890)
Q Consensus 37 ae~m~~~y~~LGLsvg~i~~~~~~~~rr~aY~~--DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSi 114 (890)
.+|++. .+|+.|++-+.++++.+|+..=.. ||.=+|..+|+.-..-. .-....+ ...|+||||+=++
T Consensus 93 L~~~~~---~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-----~~r~~l~---~vr~VIVDEiHel 161 (814)
T COG1201 93 LEEPLR---ELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-----KFRELLR---DVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHH---HcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-----HHHHHhc---CCcEEEeehhhhh
Confidence 345554 999999999999998888877765 99999999998532211 1123455 7889999998776
Q ss_pred eecCC
Q 002707 115 LIDEG 119 (890)
Q Consensus 115 LIDeA 119 (890)
.-..-
T Consensus 162 ~~sKR 166 (814)
T COG1201 162 AESKR 166 (814)
T ss_pred hcccc
Confidence 54443
No 151
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=47.72 E-value=13 Score=44.74 Aligned_cols=86 Identities=23% Similarity=0.201 Sum_probs=66.1
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCH--HHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCC
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIP--EERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKP 102 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~--~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~ 102 (890)
|||.-.-||-.=..-+..+-.+=|+.|..++.++.. ++|--.|.-|||-+|.+-|=-=|=-+|. .++.=+.
T Consensus 268 V~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~-------~l~~~k~ 340 (731)
T KOG0347|consen 268 VVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNT-------HLGNFKK 340 (731)
T ss_pred EecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhh-------hhhhhhh
Confidence 999999999988888888999999999999998874 3566777669999999976432223332 1221227
Q ss_pred cceEEeccCCeeeec
Q 002707 103 FHFAIVDEVDSVLID 117 (890)
Q Consensus 103 ~~~aIVDEvDSiLID 117 (890)
+.|++|||+|.|+=+
T Consensus 341 vkcLVlDEaDRmvek 355 (731)
T KOG0347|consen 341 VKCLVLDEADRMVEK 355 (731)
T ss_pred ceEEEEccHHHHhhh
Confidence 889999999999844
No 152
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=44.36 E-value=92 Score=33.72 Aligned_cols=55 Identities=25% Similarity=0.439 Sum_probs=43.4
Q ss_pred EEeChhHHHHHHHHHHHHhhhCCCc---EEEEecchhhHHHHHHHHHhCCCCceEecc
Q 002707 308 SFATARGKWEYARQEVESMFRLGRP---VLVGSTSVENSEYLSDLLKQQGIPHNVLNA 362 (890)
Q Consensus 308 i~~t~~~k~~AIi~ei~~~~~~grP---VLIgt~sI~~SE~ls~~L~~~gi~h~vLNA 362 (890)
.+.+..+....|+++|.+....|-| |-|.|++-..+..+++.|.+.|||..+-..
T Consensus 52 ~~~~~~~e~~~i~~~I~~l~~~~~~~~diAVL~R~~~~~~~i~~~L~~~gIp~~~~~~ 109 (351)
T PF13361_consen 52 EFDNEEEEAEYIAEEIKELIRNGIPPSDIAVLVRTNSQIKEIEDALKEAGIPYRISGS 109 (351)
T ss_dssp EESSHHHHHHHHHHHHHHHHHTTS-GGGEEEEESSGGHHHHHHHHHHHTTS-EEESSS
T ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCcccEEEEEECchhHHHHHHHHhhhcceeEeccc
Confidence 3556777778899999987766666 888999999999999999999999866443
No 153
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=44.09 E-value=14 Score=40.56 Aligned_cols=44 Identities=41% Similarity=0.691 Sum_probs=38.8
Q ss_pred chhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceEEEEecCchhhhhcc
Q 002707 528 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 582 (890)
Q Consensus 528 ~~~V~~~GGL~VIgTerheSrRID~QLrGR--aGRQGDPGss~f~lSLeD~l~~~f~ 582 (890)
..+|.+-|-.||.|+ |||| ||-+||.....|..+|+=+|+++-|
T Consensus 171 Gaev~A~G~i~v~g~-----------lrG~a~AG~~g~~~a~I~~~~~~~elv~IaG 216 (248)
T PRK04596 171 GAEVIADGSIHIYGT-----------LRGRALAGAQGNPDARIFCRDFHAELVAIAG 216 (248)
T ss_pred CCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeecCCccEEEEcc
Confidence 357888999999998 4555 7999999999999999999999887
No 154
>PRK00339 minC septum formation inhibitor; Reviewed
Probab=42.84 E-value=15 Score=40.28 Aligned_cols=44 Identities=36% Similarity=0.608 Sum_probs=39.9
Q ss_pred chhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceEEEEecCchhhhhcc
Q 002707 528 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 582 (890)
Q Consensus 528 ~~~V~~~GGL~VIgTerheSrRID~QLrGR--aGRQGDPGss~f~lSLeD~l~~~f~ 582 (890)
..+|.+-|=.||.|+ |||| ||-+||.....|..+||=+|+++-|
T Consensus 172 GAEViAdGnIhVyG~-----------LRGrA~AGa~Gd~~ArIf~~~l~aelvsIAg 217 (249)
T PRK00339 172 GAELLADGNIHVYGP-----------MRGRALAGIKGDTKARIFCQQLEAELVSIAG 217 (249)
T ss_pred CCEEEeCCCEEEEEE-----------cccEEEecCCCCCccEEEeccCCccEEEEcc
Confidence 368899999999998 7787 6999999999999999999999876
No 155
>PHA02558 uvsW UvsW helicase; Provisional
Probab=41.86 E-value=29 Score=41.36 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=31.6
Q ss_pred cCceEEEeccCC-CchhhHhhhhcccccCCCCCceEEEEecCch
Q 002707 534 LGGLHVIGTSLH-ESRRIDNQLRGRAGRQGDPGSTRFMVSLQDE 576 (890)
Q Consensus 534 ~GGL~VIgTerh-eSrRID~QLrGRaGRQGDPGss~f~lSLeD~ 576 (890)
..+|+.|.-.++ .|...=.|..||+||.|+.++...++.+=|+
T Consensus 411 ip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~ 454 (501)
T PHA02558 411 IKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDD 454 (501)
T ss_pred cccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecc
Confidence 345544444444 4566667999999999998888888888886
No 156
>PLN02748 tRNA dimethylallyltransferase
Probab=39.82 E-value=66 Score=38.51 Aligned_cols=80 Identities=28% Similarity=0.446 Sum_probs=44.5
Q ss_pred ccccccCCchhH-HHHHHhhhCCCeE-----------EcCCCCCccc--ccC---------CCcEEeChhHHHHHHHHHH
Q 002707 267 KLSGMTGTAKTE-EKEFLKMFQMPVI-----------EVPTNLPNIR--VDL---------PIQSFATARGKWEYARQEV 323 (890)
Q Consensus 267 kL~GmTGTa~te-~~Ef~~iY~l~vv-----------~IPt~kp~~R--~d~---------pd~i~~t~~~k~~AIi~ei 323 (890)
-|.|-|||.+|. +.++.+.+|..++ .|=|+||..- ..- |+.-| |...........|
T Consensus 26 ~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~y-sv~~F~~~A~~~I 104 (468)
T PLN02748 26 VVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEF-TAKDFRDHAVPLI 104 (468)
T ss_pred EEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcC-cHHHHHHHHHHHH
Confidence 378999999985 4566665553332 2778888742 222 22223 3333333444455
Q ss_pred HHhhhCC-CcEEEEecchhhHHHHHHHHH
Q 002707 324 ESMFRLG-RPVLVGSTSVENSEYLSDLLK 351 (890)
Q Consensus 324 ~~~~~~g-rPVLIgt~sI~~SE~ls~~L~ 351 (890)
.+.+++| .|||||=+.- ++..+|.
T Consensus 105 ~~I~~rgk~PIlVGGTgl----Yi~aLl~ 129 (468)
T PLN02748 105 EEILSRNGLPVIVGGTNY----YIQALVS 129 (468)
T ss_pred HHHHhcCCCeEEEcChHH----HHHHHHc
Confidence 5556555 6888885542 4444444
No 157
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=38.86 E-value=83 Score=35.71 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=46.9
Q ss_pred cccccCCchhH-HHHHHhhhCCCeEE-----------cCCCCCcc--ccc---------CCCcEEeChhHHHHHHHHHHH
Q 002707 268 LSGMTGTAKTE-EKEFLKMFQMPVIE-----------VPTNLPNI--RVD---------LPIQSFATARGKWEYARQEVE 324 (890)
Q Consensus 268 L~GmTGTa~te-~~Ef~~iY~l~vv~-----------IPt~kp~~--R~d---------~pd~i~~t~~~k~~AIi~ei~ 324 (890)
|+|=||+.+|. +-.|.+-+|.+|+. |-|.||.. +.. .|...| |...........|.
T Consensus 8 I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~y-sa~~f~~~a~~~i~ 86 (308)
T COG0324 8 IAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESY-SAAEFQRDALAAID 86 (308)
T ss_pred EECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccc-cHHHHHHHHHHHHH
Confidence 78999999996 45788877776654 55678763 211 244433 44555556677788
Q ss_pred HhhhCC-CcEEEEec
Q 002707 325 SMFRLG-RPVLVGST 338 (890)
Q Consensus 325 ~~~~~g-rPVLIgt~ 338 (890)
+.+..| -|||||=+
T Consensus 87 ~i~~rgk~pIlVGGT 101 (308)
T COG0324 87 DILARGKLPILVGGT 101 (308)
T ss_pred HHHhCCCCcEEEccH
Confidence 888888 78888743
No 158
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=38.00 E-value=19 Score=39.19 Aligned_cols=44 Identities=34% Similarity=0.623 Sum_probs=39.0
Q ss_pred chhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceEEEEecCchhhhhcc
Q 002707 528 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 582 (890)
Q Consensus 528 ~~~V~~~GGL~VIgTerheSrRID~QLrGR--aGRQGDPGss~f~lSLeD~l~~~f~ 582 (890)
..+|.+-|-.||.|+ |||| ||-+||.....|..+||=+|+++-|
T Consensus 156 GAev~A~G~i~v~G~-----------lrG~a~AG~~Gd~~A~If~~~l~aelvsIag 201 (235)
T PRK04516 156 GAELIADGNIHIYAP-----------MRGRALAGAKGDTSARIFIHSMQAELVSVAG 201 (235)
T ss_pred CCEEEeCCCEEEEEE-----------ccceEEecCCCCCccEEEeccCCccEEEEcc
Confidence 358889999999998 4565 7999999999999999999999877
No 159
>PLN02840 tRNA dimethylallyltransferase
Probab=37.48 E-value=86 Score=37.04 Aligned_cols=80 Identities=24% Similarity=0.441 Sum_probs=46.6
Q ss_pred ccccccCCchhH-HHHHHhhhCCCe-----------EEcCCCCCcc----ccc-------CCCcEEeChhHHHHHHHHHH
Q 002707 267 KLSGMTGTAKTE-EKEFLKMFQMPV-----------IEVPTNLPNI----RVD-------LPIQSFATARGKWEYARQEV 323 (890)
Q Consensus 267 kL~GmTGTa~te-~~Ef~~iY~l~v-----------v~IPt~kp~~----R~d-------~pd~i~~t~~~k~~AIi~ei 323 (890)
-++|-||+.+|. +.++.+.+|..+ +.|-|++|.. .+. .|+.-| +.........+.|
T Consensus 25 ~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~y-Sv~~F~~~A~~~I 103 (421)
T PLN02840 25 VISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDY-SVGAFFDDARRAT 103 (421)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCce-eHHHHHHHHHHHH
Confidence 478999999975 567777776543 3456778763 111 244444 3334334445556
Q ss_pred HHhhhCC-CcEEEEecchhhHHHHHHHHH
Q 002707 324 ESMFRLG-RPVLVGSTSVENSEYLSDLLK 351 (890)
Q Consensus 324 ~~~~~~g-rPVLIgt~sI~~SE~ls~~L~ 351 (890)
.+.+++| .|||||=+. -.|..+|.
T Consensus 104 ~~i~~rgkiPIvVGGTG----lYl~aLl~ 128 (421)
T PLN02840 104 QDILNRGRVPIVAGGTG----LYLRWYIY 128 (421)
T ss_pred HHHHhcCCCEEEEcCcc----HHHHHHhc
Confidence 6666667 578887543 24444444
No 160
>COG1204 Superfamily II helicase [General function prediction only]
Probab=37.08 E-value=37 Score=42.96 Aligned_cols=48 Identities=23% Similarity=0.217 Sum_probs=36.7
Q ss_pred chhhhccHHHHHHHHHHhCCccccccCCCCHHHHhhccCCCCeeecCcch
Q 002707 30 DYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSEL 79 (890)
Q Consensus 30 dyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~rr~aY~~DItYgT~~ef 79 (890)
-.||.-=++++. =|+.||++|+..+.+++.. ......|||+=+|..-|
T Consensus 86 kALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~-~~~l~~~~ViVtT~EK~ 133 (766)
T COG1204 86 KALAEEKYEEFS-RLEELGIRVGISTGDYDLD-DERLARYDVIVTTPEKL 133 (766)
T ss_pred HHHHHHHHHHhh-hHHhcCCEEEEecCCcccc-hhhhccCCEEEEchHHh
Confidence 357775566666 6699999999999887643 24678899999998854
No 161
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=36.71 E-value=1.2e+02 Score=34.93 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc
Q 002707 609 VRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTG 654 (890)
Q Consensus 609 ~~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~ 654 (890)
...|...|......+-+..+.+++...--+.+++-+|..|+.|+.|
T Consensus 43 v~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G 88 (337)
T PTZ00007 43 LKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQ 88 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcC
Confidence 3557888888888888888888888888889999999999999986
No 162
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.28 E-value=33 Score=43.12 Aligned_cols=107 Identities=12% Similarity=0.230 Sum_probs=57.8
Q ss_pred CCCcchhHHHHHHhhcC----Ceeeccc--------------------ceeccchhhhccHHHHHHHHHHhCCccccccC
Q 002707 1 MRHFDVQIIGGAVLHDG----SIAEMKT--------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 56 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G----~IaEMkT--------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~ 56 (890)
||||=.+.+-.+. .+| -|..|.| ||+.+..|.. +|...|-+|++++.+.+..
T Consensus 256 LRpYQ~eAl~~~~-~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~---QW~~ef~~~~~l~~~~I~~ 331 (732)
T TIGR00603 256 IRPYQEKSLSKMF-GNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVE---QWKQQFKMWSTIDDSQICR 331 (732)
T ss_pred cCHHHHHHHHHHH-hcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHH---HHHHHHHHhcCCCCceEEE
Confidence 4666555544442 234 3778887 6666777776 7888888888776443321
Q ss_pred CCCHHHHhhcc-CCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCee
Q 002707 57 GMIPEERRSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 114 (890)
Q Consensus 57 ~~~~~~rr~aY-~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSi 114 (890)
.+...|.... .++|+=+|.+-+..+.=|..-....-+.+ .++.++++|+|||=.+
T Consensus 332 -~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l--~~~~~gLII~DEvH~l 387 (732)
T TIGR00603 332 -FTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWL--TNREWGLILLDEVHVV 387 (732)
T ss_pred -EecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHh--ccccCCEEEEEccccc
Confidence 1111111112 36888888876654422211000000111 1237888999997644
No 163
>PRK05580 primosome assembly protein PriA; Validated
Probab=35.48 E-value=1.3e+02 Score=37.61 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhC-CCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcCC
Q 002707 313 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNM 389 (890)
Q Consensus 313 ~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~-gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATNM 389 (890)
..|....+.-+.+....|+.|||.+++++.+..+.+.|++. |+...++++.....++ .++.. ..|. ..|.|+|..
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r-~~~~~~~~~g~-~~IVVgTrs 250 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGER-LDEWRKAKRGE-AKVVIGARS 250 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHH-HHHHHHHHcCC-CCEEEeccH
Confidence 34555444445555567999999999999999999999874 7777788774211222 22332 2342 478999964
Q ss_pred C
Q 002707 390 A 390 (890)
Q Consensus 390 A 390 (890)
|
T Consensus 251 a 251 (679)
T PRK05580 251 A 251 (679)
T ss_pred H
Confidence 3
No 164
>PRK01973 septum formation inhibitor; Reviewed
Probab=35.10 E-value=22 Score=39.44 Aligned_cols=43 Identities=33% Similarity=0.549 Sum_probs=38.7
Q ss_pred hhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceEEEEecCchhhhhcc
Q 002707 529 SEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 582 (890)
Q Consensus 529 ~~V~~~GGL~VIgTerheSrRID~QLrGR--aGRQGDPGss~f~lSLeD~l~~~f~ 582 (890)
.+|..-|-.||.|+ |||| ||-+||.....|..+|+=+++++-|
T Consensus 192 AEviA~GnI~V~G~-----------lrGra~AG~~Gd~~A~If~~~l~aelvsIAg 236 (271)
T PRK01973 192 AEVIAEGNIHIYAP-----------LRGRALAGVHGNHDARIFCTCLEPELISIAG 236 (271)
T ss_pred CEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeccCCCcEEEECc
Confidence 58889999999997 5665 7999999999999999999999877
No 165
>PF06823 DUF1236: Protein of unknown function (DUF1236); InterPro: IPR009642 This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.
Probab=34.65 E-value=34 Score=30.11 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.0
Q ss_pred CcceEEeCCeEEEEeCCCCccc
Q 002707 204 DVQYIVRNGKALIINELTGRVE 225 (890)
Q Consensus 204 d~dYiV~dg~I~iVD~~TGR~~ 225 (890)
+-.|++.||+++|||..|.|+.
T Consensus 40 ~Y~Y~~v~~~~ViVdP~Tr~VV 61 (65)
T PF06823_consen 40 GYRYVVVNDRIVIVDPRTRRVV 61 (65)
T ss_pred CceEEEECCEEEEEcCCCCEEE
Confidence 7789999999999999999874
No 166
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.49 E-value=1.4e+02 Score=36.05 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=42.6
Q ss_pred HHHhhhCCCcEEEEecchhhHHHHHHHHHhC-CCCceEeccCCcchhhHHHHHH--hcCCCCcEEEEcC
Q 002707 323 VESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA--QAGRKYAITISTN 388 (890)
Q Consensus 323 i~~~~~~grPVLIgt~sI~~SE~ls~~L~~~-gi~h~vLNA~~k~~~~EA~IIa--~AG~~G~VTIATN 388 (890)
+......|+-|||.++++..+..+.+.|++. |....+++... ...+..++.. ..| ...|.|+|.
T Consensus 18 i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~-~~~er~~~~~~~~~g-~~~IVVGTr 84 (505)
T TIGR00595 18 IEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGL-SDSEKLQAWRKVKNG-EILVVIGTR 84 (505)
T ss_pred HHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCC-CHHHHHHHHHHHHcC-CCCEEECCh
Confidence 3444567888999999999999999999875 67788888742 1221122322 234 346788774
No 167
>PRK03511 minC septum formation inhibitor; Reviewed
Probab=34.48 E-value=23 Score=38.29 Aligned_cols=45 Identities=36% Similarity=0.551 Sum_probs=40.3
Q ss_pred chhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceEEEEecCchhhhhccC
Q 002707 528 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFSF 583 (890)
Q Consensus 528 ~~~V~~~GGL~VIgTerheSrRID~QLrGR--aGRQGDPGss~f~lSLeD~l~~~f~~ 583 (890)
..+|.+-|=.||.|+ |||| ||=+||+....|..+|+=+++++-|.
T Consensus 151 GAEViA~GnI~V~G~-----------LrG~a~AG~~Gd~~A~Ifa~~l~aelvsIAg~ 197 (228)
T PRK03511 151 GAELIADGNIHVYGM-----------MRGRALAGASGDRECQIFCTHLMAELVSIAGQ 197 (228)
T ss_pred CCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeccCCccEEEEcCE
Confidence 358999999999999 6777 69999999999999999999998773
No 168
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=34.04 E-value=23 Score=32.75 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=33.8
Q ss_pred CeEEeCCCCeeeccHhhHHHHHHHhcCCCCCC-----CC-CcHHHHH----HHHHHHH-HhcccCcceEEeCCeEEEE
Q 002707 151 HYTVELKNNSVELTEEGIALAEMALETNDLWD-----EN-DPWARFV----MNALKAK-EFYRRDVQYIVRNGKALII 217 (890)
Q Consensus 151 ~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~-----~~-~~~~~~i----~~Al~A~-~l~~~d~dYiV~dg~I~iV 217 (890)
+|++.+++-..|....|....+..-.|.+-+. .+ -.|..++ .+++++. .+-.+++||+|+||.|+.+
T Consensus 4 ffT~G~~EvRaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~f 81 (84)
T PF06071_consen 4 FFTAGPKEVRAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIHF 81 (84)
T ss_dssp EEEESSSEEEEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEEE
T ss_pred EEccCCCeEEEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEEE
Confidence 57777777777877777655443322321111 00 0222222 2445544 4456999999999999864
No 169
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=33.59 E-value=31 Score=41.57 Aligned_cols=87 Identities=26% Similarity=0.413 Sum_probs=66.7
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHHHH--hhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCC
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKP 102 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~r--r~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~ 102 (890)
|...-.-||+.=.++--.|-..||+.|-.+..+.+-++. +-.-.|+|+-+|...+- |.|-.+. +|+. .
T Consensus 327 ilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLi-d~Lenr~------lvl~---q 396 (673)
T KOG0333|consen 327 ILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLI-DSLENRY------LVLN---Q 396 (673)
T ss_pred eechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHH-HHHHHHH------HHhc---c
Confidence 444445677777777888889999988777778777777 77788999999999874 6664333 5666 8
Q ss_pred cceEEeccCCeeeecCCCCc
Q 002707 103 FHFAIVDEVDSVLIDEGRNP 122 (890)
Q Consensus 103 ~~~aIVDEvDSiLIDeArtp 122 (890)
+.|+++||+|-| ||.+--|
T Consensus 397 ctyvvldeadrm-iDmgfE~ 415 (673)
T KOG0333|consen 397 CTYVVLDEADRM-IDMGFEP 415 (673)
T ss_pred CceEeccchhhh-hcccccH
Confidence 999999999998 4776555
No 170
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=33.36 E-value=23 Score=40.24 Aligned_cols=47 Identities=26% Similarity=0.274 Sum_probs=34.1
Q ss_pred ccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeee
Q 002707 66 NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 116 (890)
Q Consensus 66 aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLI 116 (890)
.|...|.-+-.+-..|++|++.... ....+.. +|-.+|+||+|||-=
T Consensus 97 SderGisvvr~Kik~fakl~~~~~~-~~~~~~~---~fKiiIlDEcdsmts 143 (346)
T KOG0989|consen 97 SDERGISVVREKIKNFAKLTVLLKR-SDGYPCP---PFKIIILDECDSMTS 143 (346)
T ss_pred cccccccchhhhhcCHHHHhhcccc-ccCCCCC---cceEEEEechhhhhH
Confidence 3556666666777788999877652 3344555 899999999999853
No 171
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=33.23 E-value=52 Score=30.46 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=37.2
Q ss_pred CeEEeCCCCeeeccHhhHHHHHHHhcCCCCCCC-----C-CcHHHHHH-----HHHHHHHhcccCcceEEeCCeEEEE
Q 002707 151 HYTVELKNNSVELTEEGIALAEMALETNDLWDE-----N-DPWARFVM-----NALKAKEFYRRDVQYIVRNGKALII 217 (890)
Q Consensus 151 ~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~-----~-~~~~~~i~-----~Al~A~~l~~~d~dYiV~dg~I~iV 217 (890)
+|++-+++-..|....|...-+..-.|..-+.. + -.|..++. .|-.|-.+-.+++||+|+||.|+.+
T Consensus 4 ffT~G~~EvRAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~f 81 (83)
T cd04867 4 FFTAGPDEVRAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIFF 81 (83)
T ss_pred EECCCCCeEEEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEEE
Confidence 466666666677777775443322112221111 1 02333333 3444546667999999999998764
No 172
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=32.94 E-value=56 Score=30.31 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=56.3
Q ss_pred ccccccCCchhHHHHHHhhhCCCeEEcCCCCCcccccCCCcEEe-ChhHHHHHHHHHHHHhhhCCCcEEEE---ecchhh
Q 002707 267 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFA-TARGKWEYARQEVESMFRLGRPVLVG---STSVEN 342 (890)
Q Consensus 267 kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~-t~~~k~~AIi~ei~~~~~~grPVLIg---t~sI~~ 342 (890)
++.|+...-....+.+.+.|+.+ ...+.........+|.++- |.......++.. +.+.|.||++= +.|.++
T Consensus 27 ~v~~v~d~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~---~l~~g~~v~~EKP~~~~~~~ 101 (120)
T PF01408_consen 27 EVVAVCDPDPERAEAFAEKYGIP--VYTDLEELLADEDVDAVIIATPPSSHAEIAKK---ALEAGKHVLVEKPLALTLEE 101 (120)
T ss_dssp EEEEEECSSHHHHHHHHHHTTSE--EESSHHHHHHHTTESEEEEESSGGGHHHHHHH---HHHTTSEEEEESSSSSSHHH
T ss_pred EEEEEEeCCHHHHHHHHHHhccc--chhHHHHHHHhhcCCEEEEecCCcchHHHHHH---HHHcCCEEEEEcCCcCCHHH
Confidence 56677666666667788888887 3333332333335666654 444444444444 44578899985 778888
Q ss_pred HHHHHHHHHhCCCCceE
Q 002707 343 SEYLSDLLKQQGIPHNV 359 (890)
Q Consensus 343 SE~ls~~L~~~gi~h~v 359 (890)
++.|.+..++.|....|
T Consensus 102 ~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 102 AEELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhCCEEEE
Confidence 88888888888876543
No 173
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=32.23 E-value=2.4e+02 Score=27.73 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=51.6
Q ss_pred cccccCCchhH-HHHHHhhhCCCeEEcCCCCCc--ccccC-CCcE-EeChhHHHHHHHHHHHHhhhCCCcEEEEecchhh
Q 002707 268 LSGMTGTAKTE-EKEFLKMFQMPVIEVPTNLPN--IRVDL-PIQS-FATARGKWEYARQEVESMFRLGRPVLVGSTSVEN 342 (890)
Q Consensus 268 L~GmTGTa~te-~~Ef~~iY~l~vv~IPt~kp~--~R~d~-pd~i-~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~ 342 (890)
+.|.+|+.+|. +..+.+..+..++..=..... .+... .... ......+...+.+.+......|..++|.|...
T Consensus 3 l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t~~-- 80 (163)
T TIGR01313 3 LMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCSAL-- 80 (163)
T ss_pred EECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEeccc--
Confidence 67999999974 677777777555543222110 11111 1111 12233444566667777778888887777654
Q ss_pred HHHHHHHHHhCCCCceEec
Q 002707 343 SEYLSDLLKQQGIPHNVLN 361 (890)
Q Consensus 343 SE~ls~~L~~~gi~h~vLN 361 (890)
+......+...+.++.++.
T Consensus 81 ~~~~r~~~~~~~~~~~~i~ 99 (163)
T TIGR01313 81 KRHYRDILREAEPNLHFIY 99 (163)
T ss_pred HHHHHHHHHhcCCCEEEEE
Confidence 3444566667776665444
No 174
>COG1204 Superfamily II helicase [General function prediction only]
Probab=31.89 E-value=87 Score=39.75 Aligned_cols=135 Identities=18% Similarity=0.107 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhcccCcceEEeCCeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCcc
Q 002707 189 RFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKL 268 (890)
Q Consensus 189 ~~i~~Al~A~~l~~~d~dYiV~dg~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL 268 (890)
....+++|=...+-++++.+|.|.=-++-|+..|=+.+- |=+|.- .+...-+|
T Consensus 131 EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~----------iv~r~~-----------------~~~~~~ri 183 (766)
T COG1204 131 EKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLES----------IVARMR-----------------RLNELIRI 183 (766)
T ss_pred HHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehh----------HHHHHH-----------------hhCcceEE
Confidence 345666655455666777777765445545545544332 111110 11111489
Q ss_pred ccccCCchh--HHHHHHh--hhCCCeEEcCCCCCcccccCCCcEEeC------hhHHHHHHHHHHHHhhhCCCcEEEEec
Q 002707 269 SGMTGTAKT--EEKEFLK--MFQMPVIEVPTNLPNIRVDLPIQSFAT------ARGKWEYARQEVESMFRLGRPVLVGST 338 (890)
Q Consensus 269 ~GmTGTa~t--e~~Ef~~--iY~l~vv~IPt~kp~~R~d~pd~i~~t------~~~k~~AIi~ei~~~~~~grPVLIgt~ 338 (890)
.|++.|++. +-.+|.. .+--++-.+|..+|+.-... ....+ ......+..+.|.++++.|-+|||+|.
T Consensus 184 vgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~--~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~ 261 (766)
T COG1204 184 VGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGA--FLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVH 261 (766)
T ss_pred EEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceE--EEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEe
Confidence 999999986 3345543 23233445555555522111 11222 123446778888999999999999999
Q ss_pred chhhHHHHHHHHHh
Q 002707 339 SVENSEYLSDLLKQ 352 (890)
Q Consensus 339 sI~~SE~ls~~L~~ 352 (890)
|-..++..++.|..
T Consensus 262 sR~~a~~~A~~l~~ 275 (766)
T COG1204 262 SRKEAEKTAKKLRI 275 (766)
T ss_pred cCchHHHHHHHHHH
Confidence 99999999998885
No 175
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=31.60 E-value=77 Score=29.60 Aligned_cols=40 Identities=28% Similarity=0.398 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhCCCcEEEEecchhhH-HHHHHHHHhCCCCc
Q 002707 318 YARQEVESMFRLGRPVLVGSTSVENS-EYLSDLLKQQGIPH 357 (890)
Q Consensus 318 AIi~ei~~~~~~grPVLIgt~sI~~S-E~ls~~L~~~gi~h 357 (890)
...+-+....+.|.|+.+.|.+-..+ +.+++.|+..|++.
T Consensus 18 ga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 18 GAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp THHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 34556666778899999999998777 89999999999863
No 176
>PLN03231 putative alpha-galactosidase; Provisional
Probab=30.92 E-value=1.4e+02 Score=34.54 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=40.4
Q ss_pred HHHHHhcccCcceEEeCCeEE------------------EEeCCCCccccC-cccCc-----hHHHHHHh------HhCC
Q 002707 195 LKAKEFYRRDVQYIVRNGKAL------------------IINELTGRVEEK-RRWSE-----GIHQAVEA------KEGL 244 (890)
Q Consensus 195 l~A~~l~~~d~dYiV~dg~I~------------------iVD~~TGR~~~g-r~ws~-----GLHQalEa------KEgv 244 (890)
+.+..|-.-+-+|||.|+-=. -.|+ +||++|+ .||.. |+-....- |-|+
T Consensus 26 ~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~-~G~l~pd~~rFPs~~~~~G~k~lADyvHs~GLKfGI 104 (357)
T PLN03231 26 IVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDK-WGRPLPDPKRWPSTTGGKGFAPIAAKVHALGLKLGI 104 (357)
T ss_pred HHHcchHHhCCEEEEECCcccccccccccccccccccccccCC-CCCcccCcccCCCCccccCcHHHHHHHHhCCcceEE
Confidence 445666677889999884211 1454 5999998 69998 87655443 5677
Q ss_pred ccccCCeeEE
Q 002707 245 KIQADSVVVA 254 (890)
Q Consensus 245 ~It~e~~t~a 254 (890)
-..+-..|.|
T Consensus 105 Y~~~G~~tca 114 (357)
T PLN03231 105 HVMRGISTTA 114 (357)
T ss_pred EecCCccchh
Confidence 7777777665
No 177
>PRK00030 minC septum formation inhibitor; Provisional
Probab=30.62 E-value=29 Score=38.95 Aligned_cols=44 Identities=39% Similarity=0.653 Sum_probs=38.8
Q ss_pred chhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceEEEEecCchhhhhcc
Q 002707 528 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 582 (890)
Q Consensus 528 ~~~V~~~GGL~VIgTerheSrRID~QLrGR--aGRQGDPGss~f~lSLeD~l~~~f~ 582 (890)
..+|..-|=.||.|+ |||| ||-+||.....|..+|+=+|+++-|
T Consensus 213 GAEViAdGnIhVyG~-----------LrGra~AG~~Gd~~A~If~~~l~aelvsIAg 258 (292)
T PRK00030 213 GAEVIADGNVHVYGP-----------LRGKAMAGARGDTSARIFTTQLDAELLAVAG 258 (292)
T ss_pred CCEEEeCCCEEEEEE-----------cccEEEecCCCCCccEEEeccCCceEEEEcc
Confidence 357888899999997 6676 7999999999999999999999876
No 178
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=29.51 E-value=1.1e+02 Score=31.27 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=45.8
Q ss_pred eChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHh----CCCCceEecc
Q 002707 310 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLNA 362 (890)
Q Consensus 310 ~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~----~gi~h~vLNA 362 (890)
.+...+...++.-+.+++.+|.-|+|.|.+.+.++.|-+.|=. .-|||.+...
T Consensus 9 L~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~ 65 (154)
T PRK06646 9 TSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLD 65 (154)
T ss_pred eCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCC
Confidence 4778888899999999999999999999999999999999965 3589986443
No 179
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=29.13 E-value=28 Score=40.55 Aligned_cols=83 Identities=27% Similarity=0.296 Sum_probs=57.0
Q ss_pred ceeccchhhhccHHHHHHHHHHhCCccccccCCCCHHHH-hhcc-CCCCeeecCcchhhhHHhhhcccCcchhcccCCCC
Q 002707 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEER-RSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKP 102 (890)
Q Consensus 25 VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~r-r~aY-~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~ 102 (890)
|+|...-||..=++...++=...||-|.++..+++-..- ..-. .-+|.-+|..-+- |++.... ..-++ .
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~-----dhl~~Tk-gf~le---~ 204 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLW-----DHLENTK-GFSLE---Q 204 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHH-----HHHHhcc-CccHH---H
Confidence 999999999877776666666778888888887764422 2222 3388889998653 4443211 12234 6
Q ss_pred cceEEeccCCeeee
Q 002707 103 FHFAIVDEVDSVLI 116 (890)
Q Consensus 103 ~~~aIVDEvDSiLI 116 (890)
+.|.++||+|.+|=
T Consensus 205 lk~LVlDEADrlLd 218 (476)
T KOG0330|consen 205 LKFLVLDEADRLLD 218 (476)
T ss_pred hHHHhhchHHhhhh
Confidence 78999999999873
No 180
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=29.04 E-value=46 Score=44.32 Aligned_cols=70 Identities=20% Similarity=0.189 Sum_probs=44.8
Q ss_pred chhhhccHHHHHHHHHHhCCccccccCCCCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEec
Q 002707 30 DYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVD 109 (890)
Q Consensus 30 dyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVD 109 (890)
-.||+|=+++|+. -||-.||....-.+ +..-...|+|+|..-| .+.+... ..+. .+.++|||
T Consensus 132 rsLA~RVA~El~~---~lG~~VGY~vrf~~----~~s~~t~I~v~TpG~L-----L~~l~~d---~~Ls---~~~~IIID 193 (1294)
T PRK11131 132 RTVANRIAEELET---ELGGCVGYKVRFND----QVSDNTMVKLMTDGIL-----LAEIQQD---RLLM---QYDTIIID 193 (1294)
T ss_pred HHHHHHHHHHHhh---hhcceeceeecCcc----ccCCCCCEEEEChHHH-----HHHHhcC---Cccc---cCcEEEec
Confidence 3788888888873 36777777543211 1123578999998854 3333321 2355 89999999
Q ss_pred cCCeeeec
Q 002707 110 EVDSVLID 117 (890)
Q Consensus 110 EvDSiLID 117 (890)
|||-..+|
T Consensus 194 EAHERsLn 201 (1294)
T PRK11131 194 EAHERSLN 201 (1294)
T ss_pred Cccccccc
Confidence 99954444
No 181
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=28.96 E-value=93 Score=28.14 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=29.6
Q ss_pred HhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEe
Q 002707 325 SMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVL 360 (890)
Q Consensus 325 ~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vL 360 (890)
.....++||+|.|.+=..|...+..|++.|+....|
T Consensus 56 ~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l 91 (100)
T cd01523 56 DQLPDDQEVTVICAKEGSSQFVAELLAERGYDVDYL 91 (100)
T ss_pred hhCCCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEe
Confidence 334678999999999889999999999999873333
No 182
>PLN02692 alpha-galactosidase
Probab=28.93 E-value=2e+02 Score=34.08 Aligned_cols=122 Identities=13% Similarity=0.199 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcccCcceEEeCCeEE--EEeCCCCcccc-CcccCchHHHHHHhHh------CCccccCCeeEEEeechh
Q 002707 190 FVMNALKAKEFYRRDVQYIVRNGKAL--IINELTGRVEE-KRRWSEGIHQAVEAKE------GLKIQADSVVVAQITYQS 260 (890)
Q Consensus 190 ~i~~Al~A~~l~~~d~dYiV~dg~I~--iVD~~TGR~~~-gr~ws~GLHQalEaKE------gv~It~e~~t~a~IT~q~ 260 (890)
-...++.+..|-.-+-+||+-|+-=. --| .+|++++ ..+|.+|+......-| |+-..+.+.|.+
T Consensus 77 ~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd-~~G~~~~d~~kFP~G~k~ladyiH~~GLKfGIy~d~G~~tC~------ 149 (412)
T PLN02692 77 ETADALVSTGLSKLGYTYVNIDDCWAEIARD-EKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYSDAGYFTCS------ 149 (412)
T ss_pred HHHHHHHhccchhcCcEEEEEcCCcCCCCCC-CCCCeeeChhhcCCcHHHHHHHHHHCCCceEEEecCCccccC------
Confidence 33445556666677999999876321 123 4599998 5699999988877755 444555444321
Q ss_pred HHhhcCccccccCCchhHHH--HHHhhhCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEE-e
Q 002707 261 LFKLYPKLSGMTGTAKTEEK--EFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG-S 337 (890)
Q Consensus 261 ~Fr~Y~kL~GmTGTa~te~~--Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIg-t 337 (890)
.|..|..+-++. +...-.|+|++.+=---. +. .+..+.+.++.+.+. +.||||+.- |
T Consensus 150 --------~~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~-------~~--~~~~~~y~~m~~AL~---~tGRpI~~SlC 209 (412)
T PLN02692 150 --------KTMPGSLGHEEQDAKTFASWGIDYLKYDNCNN-------DG--SKPTVRYPVMTRALM---KAGRPIFFSLC 209 (412)
T ss_pred --------CCCCCchHHHHHHHHHHHhcCCCEEeccccCC-------CC--cchhHHHHHHHHHHH---HhCCCeEEEec
Confidence 134566665543 233458999987621100 00 011244555555543 579998874 6
Q ss_pred c
Q 002707 338 T 338 (890)
Q Consensus 338 ~ 338 (890)
+
T Consensus 210 ~ 210 (412)
T PLN02692 210 E 210 (412)
T ss_pred C
Confidence 5
No 183
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=28.85 E-value=33 Score=36.81 Aligned_cols=43 Identities=40% Similarity=0.577 Sum_probs=39.2
Q ss_pred hhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceEEEEecCchhhhhcc
Q 002707 529 SEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 582 (890)
Q Consensus 529 ~~V~~~GGL~VIgTerheSrRID~QLrGR--aGRQGDPGss~f~lSLeD~l~~~f~ 582 (890)
.+|.+-|=.||.|+ |||| ||=.||+....|.++|+=+++++-|
T Consensus 144 AEViA~GnI~V~G~-----------LrG~a~AG~~Gd~~A~I~a~~l~~elv~Iag 188 (221)
T PRK04804 144 AEVIADGSIHIYGT-----------LRGRAIAGASGDKEAVIICHSLEAELVSIAG 188 (221)
T ss_pred CEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeccCCccEEEECC
Confidence 58899999999998 6777 6999999999999999999999877
No 184
>PLN02808 alpha-galactosidase
Probab=28.72 E-value=1.9e+02 Score=33.82 Aligned_cols=121 Identities=14% Similarity=0.259 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcccCcceEEeCCeE--EEEeCCCCccccC-cccCchHHHHHHhHh------CCccccCCeeEEEeechh
Q 002707 190 FVMNALKAKEFYRRDVQYIVRNGKA--LIINELTGRVEEK-RRWSEGIHQAVEAKE------GLKIQADSVVVAQITYQS 260 (890)
Q Consensus 190 ~i~~Al~A~~l~~~d~dYiV~dg~I--~iVD~~TGR~~~g-r~ws~GLHQalEaKE------gv~It~e~~t~a~IT~q~ 260 (890)
-.-.++.+.-+-.-+-+||+-|+-= .--|+ .|+++++ .+|.+|+......=| |+-..+.+.|.+.
T Consensus 53 ~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~-~G~~~~d~~rFP~G~~~lad~iH~~GlkfGiy~~~G~~tC~~----- 126 (386)
T PLN02808 53 QTADAMVSSGLAALGYKYINLDDCWAELKRDS-QGNLVPKASTFPSGIKALADYVHSKGLKLGIYSDAGTLTCSK----- 126 (386)
T ss_pred HHHHHHHHcchHHhCCEEEEEcCCcCCCCcCC-CCCEeeChhhcCccHHHHHHHHHHCCCceEEEecCCccccCC-----
Confidence 3444555556667799999987532 11333 5999987 499999988777643 4444444333321
Q ss_pred HHhhcCccccccCCchhHHH--HHHhhhCCCeEEcCC-CCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEE-
Q 002707 261 LFKLYPKLSGMTGTAKTEEK--EFLKMFQMPVIEVPT-NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG- 336 (890)
Q Consensus 261 ~Fr~Y~kL~GmTGTa~te~~--Ef~~iY~l~vv~IPt-~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIg- 336 (890)
+..|..+-++. +...-.|+|++.+=- +.|. .+..+.+.++-+.+. +.||||+.-
T Consensus 127 ---------~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~----------~~~~~~y~~m~~AL~---~tGRpi~~sl 184 (386)
T PLN02808 127 ---------TMPGSLGHEEQDAKTFASWGIDYLKYDNCENTG----------TSPQERYPKMSKALL---NSGRPIFFSL 184 (386)
T ss_pred ---------CCCcchHHHHHHHHHHHHhCCCEEeecCcCCCC----------ccHHHHHHHHHHHHH---HhCCCeEEEe
Confidence 24666665543 233458999987631 1111 012344555555443 569998864
Q ss_pred ec
Q 002707 337 ST 338 (890)
Q Consensus 337 t~ 338 (890)
|+
T Consensus 185 c~ 186 (386)
T PLN02808 185 CE 186 (386)
T ss_pred cC
Confidence 65
No 185
>PF10861 DUF2784: Protein of Unknown function (DUF2784); InterPro: IPR021218 This is a family of uncharacterised protein. The function is not known however it is conserved in Bacteria.
Probab=26.98 E-value=32 Score=33.36 Aligned_cols=19 Identities=47% Similarity=0.774 Sum_probs=16.9
Q ss_pred hhHhhhhcccccCCCCCce
Q 002707 549 RIDNQLRGRAGRQGDPGST 567 (890)
Q Consensus 549 RID~QLrGRaGRQGDPGss 567 (890)
-.|||+|.|||++|-||+-
T Consensus 57 ~lE~~lR~~aG~~~y~~gF 75 (112)
T PF10861_consen 57 DLENWLRRRAGEAGYPGGF 75 (112)
T ss_pred HHHHHHHHHcCCCCCCCCH
Confidence 4789999999999999873
No 186
>TIGR01222 minC septum site-determining protein MinC. The minC protein assists in correct placement of the septum for cell division by inhibiting septum formation at other sites. Homologs from Deinocoocus, Synechocystis PCC 6803, and Helicobacter pylori do not hit the full length of the model and score between the trusted and noise cutoffs.
Probab=26.62 E-value=39 Score=36.08 Aligned_cols=43 Identities=42% Similarity=0.658 Sum_probs=39.3
Q ss_pred hhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceEEEEecCchhhhhcc
Q 002707 529 SEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 582 (890)
Q Consensus 529 ~~V~~~GGL~VIgTerheSrRID~QLrGR--aGRQGDPGss~f~lSLeD~l~~~f~ 582 (890)
.+|.+-|=.||.|+ |||| ||=+||.....|..+|+=+++++-|
T Consensus 142 AeViA~GnI~V~G~-----------LrG~a~AG~~Gd~~A~I~a~~l~ae~v~Iag 186 (217)
T TIGR01222 142 AEVLADGNIHVYGK-----------LRGRALAGANGDTSAVIFALDLQAELISIAG 186 (217)
T ss_pred CEEEeCCCEEEEEE-----------eccEEEcCCCCCCCcEEEeccCCccEEEECC
Confidence 58999999999998 6777 6999999999999999999999866
No 187
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=25.82 E-value=1.7e+02 Score=33.10 Aligned_cols=71 Identities=25% Similarity=0.358 Sum_probs=40.8
Q ss_pred ccccccCCchhH-HHHHHhhhCCCeE-----------EcCCCCCcccc----c-------CCCcEEeChhHHHHHHHHHH
Q 002707 267 KLSGMTGTAKTE-EKEFLKMFQMPVI-----------EVPTNLPNIRV----D-------LPIQSFATARGKWEYARQEV 323 (890)
Q Consensus 267 kL~GmTGTa~te-~~Ef~~iY~l~vv-----------~IPt~kp~~R~----d-------~pd~i~~t~~~k~~AIi~ei 323 (890)
-++|-||+.+|. +.++.+.+|..++ .|-|++|..-. . .|...| +.........+.|
T Consensus 8 ~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~-s~~~f~~~a~~~i 86 (307)
T PRK00091 8 VIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESY-SVADFQRDALAAI 86 (307)
T ss_pred EEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcc-cHHHHHHHHHHHH
Confidence 378999999985 5678877776544 45677776321 1 122323 3333333444555
Q ss_pred HHhhhCC-CcEEEEec
Q 002707 324 ESMFRLG-RPVLVGST 338 (890)
Q Consensus 324 ~~~~~~g-rPVLIgt~ 338 (890)
.+.+++| .|||||=+
T Consensus 87 ~~i~~~gk~pIlvGGt 102 (307)
T PRK00091 87 ADILARGKLPILVGGT 102 (307)
T ss_pred HHHHhCCCCEEEECcH
Confidence 5566666 56666543
No 188
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=25.57 E-value=84 Score=29.91 Aligned_cols=95 Identities=23% Similarity=0.263 Sum_probs=52.9
Q ss_pred cccccCCchh-HHHHHHhhhCCCeEEcCCCCCcccc-cCCCcEEeC-hhHHHHHHH-HHHHHhhhCCCcEEEEecchhh-
Q 002707 268 LSGMTGTAKT-EEKEFLKMFQMPVIEVPTNLPNIRV-DLPIQSFAT-ARGKWEYAR-QEVESMFRLGRPVLVGSTSVEN- 342 (890)
Q Consensus 268 L~GmTGTa~t-e~~Ef~~iY~l~vv~IPt~kp~~R~-d~pd~i~~t-~~~k~~AIi-~ei~~~~~~grPVLIgt~sI~~- 342 (890)
++|+.|+.+| -++++.+-.+..++.....+..... +.++..+.+ ...++..++ +.+....+.|.+++|-......
T Consensus 4 ~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~~~~~ 83 (143)
T PF13671_consen 4 LCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTNLSRE 83 (143)
T ss_dssp EEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS--SHH
T ss_pred EECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCcCCHH
Confidence 6899999997 4677887777444433332222222 222222211 222333343 5566677899999986555544
Q ss_pred -HHHHHHHHHhCCCCceEecc
Q 002707 343 -SEYLSDLLKQQGIPHNVLNA 362 (890)
Q Consensus 343 -SE~ls~~L~~~gi~h~vLNA 362 (890)
-+.+-+.+++.|.+..+..-
T Consensus 84 ~r~~~~~~~~~~~~~~~~v~l 104 (143)
T PF13671_consen 84 ERARLRELARKHGYPVRVVYL 104 (143)
T ss_dssp HHHHHHHHHHHCTEEEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEEE
Confidence 34677778888877665543
No 189
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=25.23 E-value=67 Score=39.39 Aligned_cols=84 Identities=25% Similarity=0.247 Sum_probs=54.7
Q ss_pred eccchhhhccHHHHHHHHHHhCCccccccCCCCHHHH------hhccCCCCeeecCcchhhhHHhhhcccCcchhcccCC
Q 002707 27 TVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEER------RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWP 100 (890)
Q Consensus 27 T~NdyLA~RDae~m~~~y~~LGLsvg~i~~~~~~~~r------r~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~ 100 (890)
+.=-.||..-++.+..=|.-||+.|+.-....--..+ -..-.|||+-||-. |+|||- .. .....
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYE--GiD~lL---Rt---g~~lg-- 337 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYE--GIDYLL---RT---GKDLG-- 337 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeech--hHHHHH---Hc---CCccc--
Confidence 3344689999999999999999999654321100001 12346899999988 899982 11 12222
Q ss_pred CCcceEEeccCCeeeecCCCCc
Q 002707 101 KPFHFAIVDEVDSVLIDEGRNP 122 (890)
Q Consensus 101 R~~~~aIVDEvDSiLIDeArtp 122 (890)
....++||||- +|=|+-|-|
T Consensus 338 -diGtVVIDEiH-tL~deERG~ 357 (830)
T COG1202 338 -DIGTVVIDEIH-TLEDEERGP 357 (830)
T ss_pred -ccceEEeeeee-eccchhccc
Confidence 67889999995 455554443
No 190
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=25.12 E-value=1.9e+02 Score=36.13 Aligned_cols=56 Identities=21% Similarity=0.171 Sum_probs=38.0
Q ss_pred hhCCCcEEEEecchhhHHHHHHHHH----hCCCCceEeccCCcchhhHHHHHHhcCCCCcEEEEcC
Q 002707 327 FRLGRPVLVGSTSVENSEYLSDLLK----QQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTN 388 (890)
Q Consensus 327 ~~~grPVLIgt~sI~~SE~ls~~L~----~~gi~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIATN 388 (890)
...|..|+|.|+|-+-+...++.+. ..|+.+.++.+. ...++.... ....||++||
T Consensus 141 al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg--~~~~~r~~~----y~~dIvygT~ 200 (656)
T PRK12898 141 ALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVED--QSPDERRAA----YGADITYCTN 200 (656)
T ss_pred hhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCC--CCHHHHHHH----cCCCEEEECC
Confidence 3468999999999998866655554 468888887764 122222222 2448999997
No 191
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=24.96 E-value=2.3e+02 Score=35.29 Aligned_cols=143 Identities=16% Similarity=0.162 Sum_probs=82.1
Q ss_pred eeEEEeechh-H----HhhcCccccccCCchhHHHHHH--hhhCCC-eEEcCCC----CCcccccCC-Cc-EEeChhHHH
Q 002707 251 VVVAQITYQS-L----FKLYPKLSGMTGTAKTEEKEFL--KMFQMP-VIEVPTN----LPNIRVDLP-IQ-SFATARGKW 316 (890)
Q Consensus 251 ~t~a~IT~q~-~----Fr~Y~kL~GmTGTa~te~~Ef~--~iY~l~-vv~IPt~----kp~~R~d~p-d~-i~~t~~~k~ 316 (890)
.|.|+++.-+ | |..|.+-.|+..-.-....=|- =-|+.. .+.||++ .|.-..+.. +. ...-...+.
T Consensus 376 ~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~~~~ 455 (636)
T TIGR03117 376 IVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAERTWL 455 (636)
T ss_pred EEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchhhHH
Confidence 4445555533 2 7777788887411000001122 112232 4678866 333332222 11 000124566
Q ss_pred HHHHHHHHHhhh-CCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHHHHHH----h-cCCCCcEEEEcCCC
Q 002707 317 EYARQEVESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA----Q-AGRKYAITISTNMA 390 (890)
Q Consensus 317 ~AIi~ei~~~~~-~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA~IIa----~-AG~~G~VTIATNMA 390 (890)
.++++++.+... .+--+||.++|-..-+.+++.|.. .++..+|--.. ...-++++. . ++..++|-++|.-+
T Consensus 456 ~~~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~-~l~~~~l~qg~--~~~~~~l~~~f~~~~~~~~~~vL~gt~sf 532 (636)
T TIGR03117 456 ENVSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVEL-GIPAEIVIQSE--KNRLASAEQQFLALYANGIQPVLIAAGGA 532 (636)
T ss_pred HHHHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHh-hcCCCEEEeCC--CccHHHHHHHHHHhhcCCCCcEEEeCCcc
Confidence 678888877654 455899999999999999999976 46666765421 111133333 1 23368999999999
Q ss_pred CCCcce
Q 002707 391 GRGTDI 396 (890)
Q Consensus 391 GRGTDI 396 (890)
.=|.|+
T Consensus 533 weGvDv 538 (636)
T TIGR03117 533 WTGIDL 538 (636)
T ss_pred cccccc
Confidence 999999
No 192
>PRK06893 DNA replication initiation factor; Validated
Probab=24.72 E-value=1.3e+02 Score=32.00 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=41.3
Q ss_pred ccccccCCchhH-----HHHHHhhhCCCeEEcCCCCCcc-------cccCCCcEEeChhH------HHH-HHHHHHHHhh
Q 002707 267 KLSGMTGTAKTE-----EKEFLKMFQMPVIEVPTNLPNI-------RVDLPIQSFATARG------KWE-YARQEVESMF 327 (890)
Q Consensus 267 kL~GmTGTa~te-----~~Ef~~iY~l~vv~IPt~kp~~-------R~d~pd~i~~t~~~------k~~-AIi~ei~~~~ 327 (890)
-|+|-+||.+|- +.++.+- +..+..+|.+.... +....+.++.++-. .|. ++..-+...+
T Consensus 43 ~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~ 121 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIK 121 (229)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHH
Confidence 378999999982 3555433 45666666642111 22234555543322 233 4444455566
Q ss_pred hCCCcEEEEecchh
Q 002707 328 RLGRPVLVGSTSVE 341 (890)
Q Consensus 328 ~~grPVLIgt~sI~ 341 (890)
+.|.+++|+|.+..
T Consensus 122 ~~~~~illits~~~ 135 (229)
T PRK06893 122 EQGKTLLLISADCS 135 (229)
T ss_pred HcCCcEEEEeCCCC
Confidence 77888877766553
No 193
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=24.60 E-value=90 Score=36.53 Aligned_cols=87 Identities=20% Similarity=0.082 Sum_probs=50.3
Q ss_pred CCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecch------hhHHHHHHHHHhCCCCceEe
Q 002707 287 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSV------ENSEYLSDLLKQQGIPHNVL 360 (890)
Q Consensus 287 ~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI------~~SE~ls~~L~~~gi~h~vL 360 (890)
|+.++.||+- .+||.+. |..+..++++++. -...-.+++-|.|= ...+.++++-++.||||-|=
T Consensus 122 Gl~~~vV~~~------~~~d~l~-td~~~ie~~i~~~---G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvN 191 (389)
T PF05889_consen 122 GLEPVVVENV------LEGDELI-TDLEAIEAKIEEL---GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVN 191 (389)
T ss_dssp T-EEEEE-EE------EETTEEE-EHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEE
T ss_pred CCeEEEeecc------CCCCeee-ccHHHHHHHHHHh---CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEc
Confidence 8999999873 3566554 4455555555333 22333444444442 23789999999999999998
Q ss_pred ccCCcchhhHHHHHHhcCCCCcE
Q 002707 361 NARPKYAAREAETVAQAGRKYAI 383 (890)
Q Consensus 361 NA~~k~~~~EA~IIa~AG~~G~V 383 (890)
||..-+..+=-.-|.+|.+.|+|
T Consensus 192 nAYgvQ~~~~~~~i~~a~~~GRv 214 (389)
T PF05889_consen 192 NAYGVQSSKCMHLIQQAWRVGRV 214 (389)
T ss_dssp GTTTTT-HHHHHHHHHHHHHSTC
T ss_pred cchhhhHHHHHHHHHHHHhcCCc
Confidence 88544444444667777665544
No 194
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=24.24 E-value=43 Score=36.38 Aligned_cols=44 Identities=41% Similarity=0.673 Sum_probs=39.0
Q ss_pred chhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceEEEEecCchhhhhcc
Q 002707 528 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 582 (890)
Q Consensus 528 ~~~V~~~GGL~VIgTerheSrRID~QLrGR--aGRQGDPGss~f~lSLeD~l~~~f~ 582 (890)
..+|.+-|=.||.|+ |||| ||=+||.....|.++|+=+++++-|
T Consensus 162 GAEViA~GnI~VyG~-----------LRG~a~AG~~Gd~~A~I~a~~l~pelvsIag 207 (239)
T PRK05177 162 GAEVVAGGSIHVYGA-----------LRGRAIAGAAGNPSARIFCRKLEAELLAIDG 207 (239)
T ss_pred CCEEEeCCCEEEEEE-----------cceEEEeCCCCCCccEEEeccCCceEEEEee
Confidence 358889999999998 6676 6999999999999999999999855
No 195
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=23.67 E-value=3.4e+02 Score=33.98 Aligned_cols=122 Identities=24% Similarity=0.310 Sum_probs=74.3
Q ss_pred CccccccCCchhHHHHHHhhh-CCCeEEcCCC-CCcccccCCCcEEeC---hhHHHHHHHHHHHHhhh--CCCcEEEEec
Q 002707 266 PKLSGMTGTAKTEEKEFLKMF-QMPVIEVPTN-LPNIRVDLPIQSFAT---ARGKWEYARQEVESMFR--LGRPVLVGST 338 (890)
Q Consensus 266 ~kL~GmTGTa~te~~Ef~~iY-~l~vv~IPt~-kp~~R~d~pd~i~~t---~~~k~~AIi~ei~~~~~--~grPVLIgt~ 338 (890)
-|+.-||+|+. ++-|.+.| +.+++.||-- .|+ .||-+ ..+-..+.+.-|.+.|. .---|||+-+
T Consensus 196 LklIimSATld--a~kfS~yF~~a~i~~i~GR~fPV-------ei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLt 266 (674)
T KOG0922|consen 196 LKLIIMSATLD--AEKFSEYFNNAPILTIPGRTFPV-------EILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLT 266 (674)
T ss_pred ceEEEEeeeec--HHHHHHHhcCCceEeecCCCCce-------eEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeC
Confidence 37888999986 44477755 5699999853 344 33322 23444566667777773 3336999999
Q ss_pred chhhHHHHHHHHHhC------CCCceE--eccCCcchhhHH-HHHHhcC-CCCcEEEEcCCCCCCcceecCC
Q 002707 339 SVENSEYLSDLLKQQ------GIPHNV--LNARPKYAAREA-ETVAQAG-RKYAITISTNMAGRGTDIILGG 400 (890)
Q Consensus 339 sI~~SE~ls~~L~~~------gi~h~v--LNA~~k~~~~EA-~IIa~AG-~~G~VTIATNMAGRGTDIkLgg 400 (890)
.-++-|...+.|.+. +++.-+ |.+. -..+|. .|-..+- -.-.|.+|||.|= |=|.+.|
T Consensus 267 GqeEIe~~~~~l~e~~~~~~~~~~~~~lply~a--L~~e~Q~rvF~p~p~g~RKvIlsTNIAE--TSlTI~G 334 (674)
T KOG0922|consen 267 GQEEIEAACELLRERAKSLPEDCPELILPLYGA--LPSEEQSRVFDPAPPGKRKVILSTNIAE--TSLTIDG 334 (674)
T ss_pred CHHHHHHHHHHHHHHhhhccccCcceeeeeccc--CCHHHhhccccCCCCCcceEEEEcceee--eeEEecc
Confidence 999999999998874 222111 2221 112222 2333331 1357999999984 5555554
No 196
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.99 E-value=3.1e+02 Score=30.77 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=69.3
Q ss_pred cccccCCchhHHHHHH---hhhCCCe-EEcCCC--CCcc------------cccCCCcEEeChhHHH-HHHHHHHHHhhh
Q 002707 268 LSGMTGTAKTEEKEFL---KMFQMPV-IEVPTN--LPNI------------RVDLPIQSFATARGKW-EYARQEVESMFR 328 (890)
Q Consensus 268 L~GmTGTa~te~~Ef~---~iY~l~v-v~IPt~--kp~~------------R~d~pd~i~~t~~~k~-~AIi~ei~~~~~ 328 (890)
++|..++.-.++-|+. +-.|.+- +.+||. +|.+ ..++|-.+|.. ...- ..+--++.....
T Consensus 77 iaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~-P~~tg~~l~~e~i~~la 155 (299)
T COG0329 77 IAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNI-PSRTGVDLSPETIARLA 155 (299)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeC-ccccCCCCCHHHHHHHh
Confidence 4455444444555554 4568884 567775 4442 23456555532 2111 122223333333
Q ss_pred CCCcEEEEecchh-hHHHHHHHHHhCCC-CceEeccCCcchhhHHHHHHhcCCCCcEEEEcCCCCC
Q 002707 329 LGRPVLVGSTSVE-NSEYLSDLLKQQGI-PHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGR 392 (890)
Q Consensus 329 ~grPVLIgt~sI~-~SE~ls~~L~~~gi-~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIATNMAGR 392 (890)
+ -|.+||...-. ....++++....+. .+.+++. .++.=..... .|-.|.|..+.|.+++
T Consensus 156 ~-~~nivgiKd~~gd~~~~~~~~~~~~~~~f~v~~G---~d~~~~~~~~-~G~~G~is~~~N~~p~ 216 (299)
T COG0329 156 E-HPNIVGVKDSSGDLDRLEEIIAALGDRDFIVLSG---DDELALPALL-LGADGVISVTANVAPE 216 (299)
T ss_pred c-CCCEEEEEeCCcCHHHHHHHHHhcCccCeeEEeC---chHHHHHHHh-CCCCeEEecccccCHH
Confidence 4 78888887554 45666766666666 6788887 2333234445 8999999999998765
No 197
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=22.96 E-value=2.1e+02 Score=35.83 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHhhhCCCc---EEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhH
Q 002707 312 ARGKWEYARQEVESMFRLGRP---VLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAARE 370 (890)
Q Consensus 312 ~~~k~~AIi~ei~~~~~~grP---VLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~E 370 (890)
..+--..|+++|.+.+..|.+ +.|.+++-..+..+...|.++|||+.+.....-+...|
T Consensus 321 ~~~Ea~~ia~~I~~l~~~g~~~~diAVL~R~~~~~~~le~~L~~~gIPy~~~g~~~f~~~~e 382 (715)
T TIGR01075 321 ELDEARFVVSRIKTWQRNGGALDECAVLYRSNAQSRVLEEALLQASIPYRIYGGMRFFERQE 382 (715)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCEEEEEecCchHHHHHHHHHHcCCCEEEeCCccccccHH
Confidence 334456788889888777743 78889999999999999999999999887643334444
No 198
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=22.41 E-value=2e+02 Score=32.50 Aligned_cols=71 Identities=15% Similarity=0.318 Sum_probs=38.9
Q ss_pred cccccCCchhH-HHHHH----hhhCCCe------EEcCCCCCccc----ccC-------CCcEEeChhHHHHHHHHHHHH
Q 002707 268 LSGMTGTAKTE-EKEFL----KMFQMPV------IEVPTNLPNIR----VDL-------PIQSFATARGKWEYARQEVES 325 (890)
Q Consensus 268 L~GmTGTa~te-~~Ef~----~iY~l~v------v~IPt~kp~~R----~d~-------pd~i~~t~~~k~~AIi~ei~~ 325 (890)
|.|-||+.+|. +-++. +|-+.|. +.|-|+||..- ..| |+.-| |.....+...+.|.+
T Consensus 9 I~GpTasGKS~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~-sv~~f~~~a~~~i~~ 87 (300)
T PRK14729 9 IFGPTAVGKSNILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEY-NLGIFYKEALKIIKE 87 (300)
T ss_pred EECCCccCHHHHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCce-eHHHHHHHHHHHHHH
Confidence 78999999985 33443 2333332 24678888742 111 33344 333333334445555
Q ss_pred hhhCC-CcEEEEecc
Q 002707 326 MFRLG-RPVLVGSTS 339 (890)
Q Consensus 326 ~~~~g-rPVLIgt~s 339 (890)
.++.| .|||||=+.
T Consensus 88 i~~~gk~PilvGGTg 102 (300)
T PRK14729 88 LRQQKKIPIFVGGSA 102 (300)
T ss_pred HHHCCCCEEEEeCch
Confidence 56656 688887544
No 199
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.27 E-value=1.4e+02 Score=30.31 Aligned_cols=64 Identities=16% Similarity=0.045 Sum_probs=38.6
Q ss_pred hHHHHHHh---hhCCCeEEcCCCCCcccccCCC-cEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchh
Q 002707 277 TEEKEFLK---MFQMPVIEVPTNLPNIRVDLPI-QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 341 (890)
Q Consensus 277 te~~Ef~~---iY~l~vv~IPt~kp~~R~d~pd-~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~ 341 (890)
.-+.+|.. ..|..+..++..... ..+..| .|+-+....-..+++-+..+++.|-||+.+|.+.+
T Consensus 43 ~~A~~~~~~l~~~g~~~~~~~~~~~~-~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 43 LVGKAFAMRLMHLGFNVYVVGETTTP-SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCcccC-CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 34455442 347777766543211 122233 34556666666777777777888888888888754
No 200
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=21.96 E-value=2.4e+02 Score=30.47 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccC
Q 002707 610 RQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGA 655 (890)
Q Consensus 610 ~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~ 655 (890)
.+|...|.++...+-...+...+-..--+.+++-+|..|+.|+.|.
T Consensus 5 ~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~ 50 (244)
T PF00956_consen 5 EALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGK 50 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccc
Confidence 4577888888888888888888888888899999999999999874
No 201
>PRK13947 shikimate kinase; Provisional
Probab=21.77 E-value=1.1e+02 Score=30.30 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=49.5
Q ss_pred cccccCCchhH-HHHHHhhhCCCeEEcCCCCCcccccCCCcEEeC-hhHHHHHHHHHHHHhhhCCCcEEEEecc--hhhH
Q 002707 268 LSGMTGTAKTE-EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFAT-ARGKWEYARQEVESMFRLGRPVLVGSTS--VENS 343 (890)
Q Consensus 268 L~GmTGTa~te-~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~t-~~~k~~AIi~ei~~~~~~grPVLIgt~s--I~~S 343 (890)
|.||.|+.+|. +..+.+.+|..++.........--..+..+|.. .+..|.+.-.++.+......++.|+|.. +-..
T Consensus 6 l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~vl~~ 85 (171)
T PRK13947 6 LIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGVVLNP 85 (171)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCCcCCH
Confidence 67999999975 677889999999887765322210111122322 2234555554554444334455556542 2333
Q ss_pred HHHHHHHHhCCCCceEecc
Q 002707 344 EYLSDLLKQQGIPHNVLNA 362 (890)
Q Consensus 344 E~ls~~L~~~gi~h~vLNA 362 (890)
+. ...|.+.++ .-.|.+
T Consensus 86 ~~-~~~l~~~~~-vv~L~~ 102 (171)
T PRK13947 86 EN-VVQLRKNGV-VICLKA 102 (171)
T ss_pred HH-HHHHHhCCE-EEEEEC
Confidence 33 344565553 334444
No 202
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=21.24 E-value=4.7e+02 Score=30.52 Aligned_cols=92 Identities=21% Similarity=0.184 Sum_probs=54.8
Q ss_pred hHHhhcC-ccccccCCchhH---------HHHHHhhhCCCeEEcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhh-
Q 002707 260 SLFKLYP-KLSGMTGTAKTE---------EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFR- 328 (890)
Q Consensus 260 ~~Fr~Y~-kL~GmTGTa~te---------~~Ef~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~- 328 (890)
+.++.|+ ++.++.+|.-++ .+++.+..+.+|+.++|. ..+- +..+=+.++++.+.....
T Consensus 78 ~i~~~~~P~~I~V~tTC~se~IGDDi~~v~~~~~~~~~~pVi~v~tp--gf~g--------~~~~G~~~~~~alv~~~~~ 147 (407)
T TIGR01279 78 QIKRDRNPSVIFLLSSCTPEVIKMDLEGLAERLSTNFGVPVLFAPAS--GLDY--------TFTQGEDTVLAALVPFCPE 147 (407)
T ss_pred HHHhhcCCCEEEEECCchHHHHHhhHHHHHHHHHHhhCCCEEEeeCC--Cccc--------cHHHHHHHHHHHHHHhhcc
Confidence 4456664 665555555432 356666678888888764 2111 112224444444433221
Q ss_pred -----CCCcEEEEecchhhHHHHHHHHHhCCCCce-Eec
Q 002707 329 -----LGRPVLVGSTSVENSEYLSDLLKQQGIPHN-VLN 361 (890)
Q Consensus 329 -----~grPVLIgt~sI~~SE~ls~~L~~~gi~h~-vLN 361 (890)
++.=+|+|.-+......|..+|+.-|++.. ++-
T Consensus 148 ~~~~~~~~vniiG~~~~~d~~elk~lL~~~Gi~v~~~lp 186 (407)
T TIGR01279 148 APASEQRALVLVGSVNDIVADQLRLELKQLGIPVVGFLP 186 (407)
T ss_pred ccCCCCCcEEEEeccChhhHHHHHHHHHHcCCeEEEEeC
Confidence 133377888787778899999999999986 664
No 203
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=21.13 E-value=3.1e+02 Score=34.95 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=36.6
Q ss_pred hCCCcEEEEecchhhHHHHHHHH----HhCCCCceEeccCCcchhhHHHHHHhcCCCCcEEEEcC
Q 002707 328 RLGRPVLVGSTSVENSEYLSDLL----KQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTN 388 (890)
Q Consensus 328 ~~grPVLIgt~sI~~SE~ls~~L----~~~gi~h~vLNA~~k~~~~EA~IIa~AG~~G~VTIATN 388 (890)
..|+.|+|.|++..-+...++.+ +..|+.+.+......+.....+.-..+ ....||++||
T Consensus 109 L~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~-y~~dIvygTp 172 (762)
T TIGR03714 109 LTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKI-YNSDIVYTTN 172 (762)
T ss_pred hcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHh-CCCCEEEECc
Confidence 46888999999999887666665 556888766443211111222222222 2457888885
No 204
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=21.04 E-value=25 Score=32.98 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=20.6
Q ss_pred ceEEeccCCee-----------eecCCCCcccccCCC
Q 002707 104 HFAIVDEVDSV-----------LIDEGRNPLLISGEA 129 (890)
Q Consensus 104 ~~aIVDEvDSi-----------LIDeArtpLiISg~~ 129 (890)
.++||||+|.+ |.|+.+.+++++|.+
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 68999999997 667777777777754
No 205
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.95 E-value=1.5e+02 Score=27.82 Aligned_cols=57 Identities=11% Similarity=0.003 Sum_probs=36.6
Q ss_pred hhh-CCCeEEcCCCC----CcccccCCCc-EEeChhHHHHHHHHHHHHhhhCCCcEEEEecchh
Q 002707 284 KMF-QMPVIEVPTNL----PNIRVDLPIQ-SFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 341 (890)
Q Consensus 284 ~iY-~l~vv~IPt~k----p~~R~d~pd~-i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~ 341 (890)
... +..+..++++. +. ..+..|. |.-+....-..+++-++..++.|-||+.+|.+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 22 ERLAGIPVEVEAASEFRYRRP-LLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred HHhcCCceEEEehhHhhhcCC-CCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 444 37777666321 11 1334454 4456666666788888888889999999999854
No 206
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=20.78 E-value=46 Score=42.73 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=20.9
Q ss_pred CCcceEEeccCCeeeecCCCCccccc
Q 002707 101 KPFHFAIVDEVDSVLIDEGRNPLLIS 126 (890)
Q Consensus 101 R~~~~aIVDEvDSiLIDeArtpLiIS 126 (890)
|.|+||||||+--|++=-.--||.+|
T Consensus 795 R~FD~cIiDEASQI~lP~~LgPL~~s 820 (1100)
T KOG1805|consen 795 RQFDYCIIDEASQILLPLCLGPLSFS 820 (1100)
T ss_pred cccCEEEEccccccccchhhhhhhhc
Confidence 59999999999999876666666555
No 207
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=20.74 E-value=58 Score=31.57 Aligned_cols=69 Identities=29% Similarity=0.344 Sum_probs=50.4
Q ss_pred EEeChhHHHHHHHHHHHHhhhCCCcEEEEecchh-hHHHHHHHHHhCCCCceEecc------------CCcchhhHHHHH
Q 002707 308 SFATARGKWEYARQEVESMFRLGRPVLVGSTSVE-NSEYLSDLLKQQGIPHNVLNA------------RPKYAAREAETV 374 (890)
Q Consensus 308 i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~-~SE~ls~~L~~~gi~h~vLNA------------~~k~~~~EA~II 374 (890)
-|.+..+-+.++++.+... + |++|+.+.-. -+..++..|.+.|++..++|+ +.|++...|..|
T Consensus 27 ~~~~~~~~~~~l~~~l~~~---~-~~~v~~E~tg~y~~~l~~~L~~~g~~v~~vnp~~~~~~~~~~~~~~KtD~~DA~~i 102 (144)
T PF01548_consen 27 KFENDPAGLEKLLDWLASL---G-PVLVVMEATGGYWRPLADFLQDAGIEVVVVNPLQVKRFRKSLGRRAKTDKIDARAI 102 (144)
T ss_pred EEeccccchhHHhhhhccc---c-ccccccccccccchhhhhheeccccccccccccccccccccccccccccccchHHH
Confidence 4566666677777666554 2 9999988876 367999999999998877775 235666678888
Q ss_pred HhcCCC
Q 002707 375 AQAGRK 380 (890)
Q Consensus 375 a~AG~~ 380 (890)
++....
T Consensus 103 a~~~~~ 108 (144)
T PF01548_consen 103 ARLLRR 108 (144)
T ss_pred HHHHhc
Confidence 877654
No 208
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=20.54 E-value=75 Score=40.61 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=43.8
Q ss_pred ceeccchhhhccHHH-HHHHH-HHhCCccccccCCCCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCC
Q 002707 25 VVTVNDYLAQRDAEW-MERVH-RFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKP 102 (890)
Q Consensus 25 VVT~NdyLA~RDae~-m~~~y-~~LGLsvg~i~~~~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~ 102 (890)
+||.-.-+|.+-... |...+ ..+|.+||......+ +..-...|+|+|..-| .+.+... .... +
T Consensus 49 lvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~----~~s~~t~I~v~T~G~L-----lr~l~~d---~~L~---~ 113 (819)
T TIGR01970 49 IMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN----KVSRRTRLEVVTEGIL-----TRMIQDD---PELD---G 113 (819)
T ss_pred EEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc----ccCCCCcEEEECCcHH-----HHHHhhC---cccc---c
Confidence 666665555444332 33222 345667776543221 1122458999999754 2333222 2345 7
Q ss_pred cceEEeccCCeeeec
Q 002707 103 FHFAIVDEVDSVLID 117 (890)
Q Consensus 103 ~~~aIVDEvDSiLID 117 (890)
+.++||||+|-..+|
T Consensus 114 v~~VIiDEaHER~L~ 128 (819)
T TIGR01970 114 VGALIFDEFHERSLD 128 (819)
T ss_pred CCEEEEeccchhhhc
Confidence 999999999975554
No 209
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=20.32 E-value=1.1e+02 Score=26.07 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEecchhhHHHHHHHHHhCCCCceEecc
Q 002707 334 LVGSTSVENSEYLSDLLKQQGIPHNVLNA 362 (890)
Q Consensus 334 LIgt~sI~~SE~ls~~L~~~gi~h~vLNA 362 (890)
|.-|.+.-+++.+...|...||++.+.|.
T Consensus 3 l~~~~~~~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 3 LYTAGDPIEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp EEEE--HHHHHHHHHHHHHTT--EE--S-
T ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEECC
Confidence 56778888999999999999999999775
No 210
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.16 E-value=1.8e+02 Score=27.36 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=34.3
Q ss_pred hCCCeEEcCCCC----CcccccCCCcE-EeChhHHHHHHHHHHHHhhhCCCcEEEEecch
Q 002707 286 FQMPVIEVPTNL----PNIRVDLPIQS-FATARGKWEYARQEVESMFRLGRPVLVGSTSV 340 (890)
Q Consensus 286 Y~l~vv~IPt~k----p~~R~d~pd~i-~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI 340 (890)
-|..+..+++.. .....+..|.+ .-+....-..+++-++.++++|-||+.+|.+.
T Consensus 25 ~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 25 TGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 366776665432 11222334443 44666666778878888888888888888764
No 211
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=20.06 E-value=2.7e+02 Score=34.98 Aligned_cols=60 Identities=17% Similarity=0.312 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHHHhhhCCC----cEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhH
Q 002707 311 TARGKWEYARQEVESMFRLGR----PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAARE 370 (890)
Q Consensus 311 t~~~k~~AIi~ei~~~~~~gr----PVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~E 370 (890)
+..+....|++.|.+.+..|. =+-|.|++-..+..+...|.++|||+.+.....-+...|
T Consensus 321 ~~~~Ea~~ia~~I~~l~~~~~~~~~diAVL~R~~~~~~~l~~~L~~~gIP~~~~g~~~f~~r~e 384 (726)
T TIGR01073 321 TERDEAQFVAGEIDKLVKNGERKYGDFAILYRTNAQSRVFEETLLKANIPYKIVGGLKFYDRKE 384 (726)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCCEEEEEeCchhHHHHHHHHHHcCCCEEEeCCcccccCHH
Confidence 444555678889988877663 467778888899999999999999998876642233344
Done!