Query 002707
Match_columns 890
No_of_seqs 197 out of 1233
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 17:10:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002707.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1426-1430//hhsearch_pdb/002707hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipc_A Preprotein translocase 1.0 1 1 1683.7 63.5 751 1-881 78-940 (997)
2 3jux_A Protein translocase sub 1.0 1 1 1601.4 60.1 671 1-879 74-818 (822)
3 1nkt_A Preprotein translocase 1.0 1 1 1507.7 68.9 732 1-882 110-868 (922)
4 2fsf_A Preprotein translocase 1.0 1 1 1455.0 53.8 713 1-883 73-827 (853)
5 1tf5_A Preprotein translocase 1.0 1 1 1385.5 63.7 680 1-881 82-785 (844)
6 3i32_A Heat resistant RNA depe 1.0 1 1 124.9 9.8 133 307-579 7-140 (300)
7 2db3_A ATP-dependent RNA helic 1.0 1 1 117.4 20.5 128 266-397 237-367 (434)
8 1hv8_A Putative ATP-dependent 1.0 1 1 117.3 18.6 124 267-397 180-305 (367)
9 1s2m_A Putative ATP-dependent 1.0 1 1 116.8 21.6 169 267-576 196-367 (400)
10 2v1x_A ATP-dependent DNA helic 1.0 1 1 116.4 19.8 166 267-575 202-375 (591)
No 1
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=1683.68 Aligned_cols=751 Identities=45% Similarity=0.716 Sum_probs=669.0
Q ss_pred CCCCCHHHHHHHHHHCCCEEECCC-----------------------CEECCCHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 998504689899850697210000-----------------------000150020200999999999918813102689
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 ~r~ydvQl~gg~~L~~G~iaEM~T-----------------------VvT~NdyLA~RD~e~~~~~y~~LGlsvg~i~~~ 57 (890)
|+|||||++|+++||+|+||||+| |+|+|+|||+||++||+++|++||++|+++..+
T Consensus 78 ~~Pt~VQ~~~ip~LlqG~IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg 157 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHA 157 (997)
T ss_dssp CCCCHHHHHHHHHHHTTSEEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred CCCCHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99967988624002477032336899639999999999998489779995889999999999999998649859999699
Q ss_pred CCHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCCHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99888850337998341396303667753106371000036999963477216880355089986114578887976369
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~r~~aY~~dI~YgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiiSg~~~~~~~~y~ 137 (890)
+++++|+.+|.|||||||+++||||||||+|+.+++++++|++++++|+|||||||||+|+|++|||||||++....+|.
T Consensus 158 ~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLIISgp~~~~~~lY~ 237 (997)
T 2ipc_A 158 STPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYY 237 (997)
T ss_dssp CCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEEEESCSSCHHHHH
T ss_pred CCHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEEECHHHHHHHCCCCCEEEECCCCCCHHHHH
T ss_conf 99999998739998997844661699997640056650224677743699761678997478887464078754158999
Q ss_pred HHHHHHHHHCCCC------------CEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999830597------------84996778845416846999998706899778888-2999999999999851259
Q 002707 138 VAAKVAELLVQGL------------HYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRD 204 (890)
Q Consensus 138 ~~~~~v~~l~~~~------------~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d 204 (890)
.++.+++.|.++. ||.+|++.++++||+.|+.++|+++++++||++.+ .|.|||.+||+|+++|++|
T Consensus 238 ~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~ALrA~~lf~rd 317 (997)
T 2ipc_A 238 KMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRD 317 (997)
T ss_dssp HHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999998563223333345677777598617635997657799999980995225713678999999999999997569
Q ss_pred CCEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 43088689499986999921369644903889999580994456874378753246772148410456894538999996
Q 002707 205 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 284 (890)
Q Consensus 205 ~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaiEaKEgl~i~~e~~t~a~IS~q~~Fr~Y~kL~GmTGTa~te~~El~~ 284 (890)
+||||+||+|+|||+||||+|+|||||+||||||||||||+|++||+|+|+||||||||+|+||+||||||+||+.||++
T Consensus 318 ~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGTA~tE~~Ef~~ 397 (997)
T 2ipc_A 318 RDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQE 397 (997)
T ss_dssp HHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHH
T ss_pred CCEEEECCEEEEEECCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHCHHHEECCCCCHHHHHHHHH
T ss_conf 87597889899997899836889866578899999981898887762036652989998573750469896679999999
Q ss_pred HHCCCEEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH-------------
Q ss_conf 6099959939999855322898089493379999999999845279969998243323899999999-------------
Q 002707 285 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK------------- 351 (890)
Q Consensus 285 iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~aii~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~------------- 351 (890)
+||++|++||||+|++|+|+||.||+|..+||.||+++|.++|++||||||||.||++||.||.+|+
T Consensus 398 iY~l~Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~ 477 (997)
T 2ipc_A 398 IYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRL 477 (997)
T ss_dssp HHCCCEEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHH
T ss_pred HHCCCEEECCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 86987898699998431258981774999999999999999997799889996979999999999730322320344444
Q ss_pred ---------------------------------------------------------------HCCCCCEEECCCCCCHH
Q ss_conf ---------------------------------------------------------------57998058416985402
Q 002707 352 ---------------------------------------------------------------QQGIPHNVLNARPKYAA 368 (890)
Q Consensus 352 ---------------------------------------------------------------~~gi~h~vLna~~k~~~ 368 (890)
+.||||+|||| |+|+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNA--K~he 555 (997)
T 2ipc_A 478 ELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNA--KHHA 555 (997)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECS--SSHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCC--CCHH
T ss_conf 54432221002310011233210000001111121122344311122344431011234578870987465145--5208
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHH
Q ss_conf 08999986299885999817887894200499714778999999998887642012224567899401345420230479
Q 002707 369 REAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLA 448 (890)
Q Consensus 369 ~Ea~IIa~AG~~G~VTIATNMAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (890)
+||+|||+||++|+||||||||||||||+|||||+++++..++... .+ + .. .....+
T Consensus 556 ~EAeIIAqAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~--------~~---------~--~~---~~~~~~- 612 (997)
T 2ipc_A 556 REAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEG--------FD---------R--YE---WKVELF- 612 (997)
T ss_dssp HHHHHHHTTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSC--------SS---------T--TH---HHHHHH-
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCEECCCCHHHHHHHHHHHHC--------CC---------C--CC---CCCCCC-
T ss_conf 7999999559998199975556799672058987899999887501--------46---------4--32---100000-
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999998755134467730233221000245666544438999988732025799971468888866421001234441
Q 002707 449 LLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEG 528 (890)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (890)
.......+ ..|.. ..-+ + ...++.+. +.+.++++.|..++
T Consensus 613 -------~~~~~~~~--~~~~~-------------------~~~~-------~----~~~~~~~~-~~~~~~~~~~~~e~ 652 (997)
T 2ipc_A 613 -------IKKMVAGK--EEEAR-------------------ALAQ-------E----LGIREELL-ERIREIREECKQDE 652 (997)
T ss_dssp -------HHHHHHTC--HHHHH-------------------HHHH-------H----TTCCHHHH-HHHHHHHHHHHHHH
T ss_pred -------CCCCCCCC--HHHCC-------------------CCCH-------H----HHHHHHHH-HHHHHHHHHHHHHH
T ss_conf -------00013440--12101-------------------1100-------1----22346678-88877665544445
Q ss_pred HHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 23552386289931589822367652012245899993479986572355411589147999997529999987553069
Q 002707 529 SEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAI 608 (890)
Q Consensus 529 ~~V~~~GGL~VIgTerheS~RID~QLrGRaGRQGdPGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~ 608 (890)
++|+++|||||||||||||||||||||||||||||||||||||||||+|||+|| ++++.++|.++++++++||+|+|+
T Consensus 653 ~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDdLmr~fg--~~~~~~~m~~l~~~~~~~Ie~~~v 730 (997)
T 2ipc_A 653 ERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFA--SDRVIAMLDRMGFDDSEPIEHPMV 730 (997)
T ss_dssp HHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSHHHHHSS--CTTHHHHHHHTCCCSSSCBCCHHH
T ss_pred HHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHC--HHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 679865871998235785199999996433569999874899987728887436--299999999719999875344699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999977689999998656877898899999999876118777799999999999999987007999998756
Q 002707 609 VRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYW 688 (890)
Q Consensus 609 ~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iY~~R~~iL~~~~~dl~~~I~~~~~~~i~~iv~~~~~~~~~~~~w 688 (890)
+++|++||++||++||++||++++||+|||.||++||++|+.||.+.++++++.|..|++++++.+|+.+.++...+++|
T Consensus 731 ~~~ie~AQkkvE~~nf~iRK~ll~yDdV~n~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~w 810 (997)
T 2ipc_A 731 TRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVASLAENFLNPEVHPEDW 810 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHSCSSCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHC
T ss_conf 99999999999997599999999789999999999999999998568332899999999999999999745876770013
Q ss_pred CHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 78999999999860001222106773101222101443332344577789999998632221222310134443125654
Q 002707 689 SLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDL 768 (890)
Q Consensus 689 d~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (890)
|+++|...+...++.. .+ ..+.+|.
T Consensus 811 ~~~~l~~~~~~~~~~~---------~~---------------------------------------~~~~~~~------- 835 (997)
T 2ipc_A 811 DLEGLKATLLDTAPQL---------QD---------------------------------------FPFAELR------- 835 (997)
T ss_dssp CHHHHHHHHHHSSCCC---------CS---------------------------------------SHHHHHH-------
T ss_pred CHHHHHHHHHHHCCCC---------CC---------------------------------------CCHHHHH-------
T ss_conf 7999999999861865---------68---------------------------------------8978873-------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 32434421269999999999999999887631189899999999999999969999999999989976000112478917
Q 002707 769 TKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPL 848 (890)
Q Consensus 769 ~~~~~~~~~~~~l~~~L~~~~~~~y~~k~~~~~~~~~~i~~~ER~ilL~~ID~~W~eHLd~Md~LRegI~LRsYaQkDPL 848 (890)
..+.+++.+++.+.+.+.|..+ ....+++.++++||.++|++||.+|+|||++||+||+|||||+||||||+
T Consensus 836 ------~~~~~~~~~~l~~~~~~~y~~k--~~~~~~~~~~~~er~~~L~~iD~~W~eHl~~md~Lr~~i~lr~y~q~dPl 907 (997)
T 2ipc_A 836 ------ALKAEEAVERLVEAALKAYEAR--EAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLRQGIFLRGYGQKDPF 907 (997)
T ss_dssp ------HSCSHHHHHHHHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSSSCHH
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf ------0688999999999999999998--87529999999999999999989999999999999988620032678969
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 889999999999999999999999847134476
Q 002707 849 EEYKIDGCRFFISMLSATRRLTVESLVQYWSSP 881 (890)
Q Consensus 849 ~EYk~Eaf~lF~~M~~~Ik~eiv~~Ll~~~~~~ 881 (890)
+|||+|||+||+.|+.+|+.+++++||++.+..
T Consensus 908 ~eyk~e~~~~F~~m~~~i~~~~~~~l~~~~~~~ 940 (997)
T 2ipc_A 908 QEYKIEATRLFNEMVAFIKSEVAKFLFRLKVEA 940 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999999999999998463555
No 2
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=1.00 E-value=1 Score=1601.35 Aligned_cols=671 Identities=42% Similarity=0.690 Sum_probs=633.1
Q ss_pred CCCCCHHHHHHHHHHCCCEEECCC-----------------------CEECCCHHHHCCHHHHHHHHHHHCCCCCCCCC-
Q ss_conf 998504689899850697210000-----------------------00015002020099999999991881310268-
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR- 56 (890)
Q Consensus 1 ~r~ydvQl~gg~~L~~G~iaEM~T-----------------------VvT~NdyLA~RD~e~~~~~y~~LGlsvg~i~~- 56 (890)
|||||||||||++||+|+||||+| |||+|+|||+||++||+|+|+|||||||+|.+
T Consensus 74 ~r~~dvQligg~~L~~G~iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~~ 153 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGKVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINSL 153 (822)
T ss_dssp CCCCHHHHHHHHHHHTTCEEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred CCCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 99868999889998189711135899856999999999996599649992638888968999999998709879997578
Q ss_pred -------------------------------------------------CCCHHHHHHCCCCCCEEECCCCHHHHHHHHH
Q ss_conf -------------------------------------------------9998888503379983413963036677531
Q 002707 57 -------------------------------------------------GMIPEERRSNYRCDITYTNNSELGFDYLRDN 87 (890)
Q Consensus 57 -------------------------------------------------~~~~~~r~~aY~~dI~YgT~~efgFDyLRD~ 87 (890)
++++++||+||+||||||||+||||||||||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~EfgFDYLRDn 233 (822)
T 3jux_A 154 GKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDN 233 (822)
T ss_dssp TEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHCCCCEECCCCCHHHHHHHHH
T ss_conf 75332110110012321001112344333210012200011110001246997999998069978726753016757750
Q ss_pred CCCCCCHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEEECCHHH
Q ss_conf 06371000036999963477216880355089986114578887976369999999983059784996778845416846
Q 002707 88 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEG 167 (890)
Q Consensus 88 ~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G 167 (890)
|+.+++++||| +++||||||||||||||||||||||||.+.++.+|..++.+++.|.++.||.+|++.++|+||++|
T Consensus 234 m~~~~~~~vqR---~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~lTe~G 310 (822)
T 3jux_A 234 LVLDYNDKVQR---GHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTIILTEEG 310 (822)
T ss_dssp SCSSTTSCCCC---CCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEEECHHH
T ss_pred CCCCHHHHCCC---CCCEEEEECCCCEEECCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCEEEECHHH
T ss_conf 24787875267---887699845554024589987053089987647999999999965868868998465748777878
Q ss_pred HHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999998706899778888-2999999999999851259430886894999869999213696449038899995809944
Q 002707 168 IALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKI 246 (890)
Q Consensus 168 ~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaiEaKEgl~i 246 (890)
+.++|.++++++||++.+ +|.+||.+||+|+++|++|+||||+||+|+|||+||||+|+|||||+||||||||||||+|
T Consensus 311 ~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKEgv~i 390 (822)
T 3jux_A 311 VAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPI 390 (822)
T ss_dssp HHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHHHSSCC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 99999871875335433667999999999999987079847988997999978989689898076588999999749988
Q ss_pred CCCCEEEEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHH
Q ss_conf 56874378753246772148410456894538999996609995993999985532289808949337999999999984
Q 002707 247 QADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESM 326 (890)
Q Consensus 247 ~~e~~t~a~IS~q~~Fr~Y~kL~GmTGTa~te~~El~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~aii~ei~~~ 326 (890)
++||+|+|+||||||||+|+||+||||||++++.||.++|+++|++||||+|++|+|.|+.+|.+..+||.++++++.+.
T Consensus 391 ~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~ 470 (822)
T 3jux_A 391 KEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKR 470 (822)
T ss_dssp CCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCEEECCCEEEECHHHHHHHHHHHHHHH
T ss_conf 87754267778999999722773888889569999999869819997799985346447178845789999999999988
Q ss_pred HHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCHHHHH
Q ss_conf 52799699982433238999999995799805841698540208999986299885999817887894200499714778
Q 002707 327 FRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLA 406 (890)
Q Consensus 327 ~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLna~~k~~~~Ea~IIa~AG~~G~VTIATNMAGRGTDIkLgg~~~~~~ 406 (890)
+..||||||+|.|++.||.|+..|.+.|++|++|||+ ++++|++|+++||++|+||||||||||||||+|||
T Consensus 471 ~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgk--q~~rE~~ii~~ag~~g~VtVATdmAgRGtDI~lg~------ 542 (822)
T 3jux_A 471 YKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAK--YHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLGP------ 542 (822)
T ss_dssp HHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSC--HHHHHHHHHHHHHSTTCEEEEETTTTTTCCCCCCT------
T ss_pred HHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCC------
T ss_conf 6079978999787899999999999779977981088--16899999996799984999766121874866886------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999888764201222456789940134542023047999999998755134467730233221000245666544
Q 002707 407 KKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQS 486 (890)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (890)
T Consensus 543 -------------------------------------------------------------------------------- 542 (822)
T 3jux_A 543 -------------------------------------------------------------------------------- 542 (822)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 43899998873202579997146888886642100123444123552386289931589822367652012245899993
Q 002707 487 MNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGS 566 (890)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheS~RID~QLrGRaGRQGdPGs 566 (890)
.|+++||||||+|++|+|+|+++|++|||||||+||+
T Consensus 543 -------------------------------------------~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~ 579 (822)
T 3jux_A 543 -------------------------------------------GVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGE 579 (822)
T ss_dssp -------------------------------------------TTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCE
T ss_pred -------------------------------------------CHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCEE
T ss_conf -------------------------------------------4100698879965799978888874276115989766
Q ss_pred EEEEEECCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47998657235541158914799999752999998755306999999999999977689999998656877898899999
Q 002707 567 TRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYD 646 (890)
Q Consensus 567 s~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iY~ 646 (890)
|+||+|+||++|+.|| ++++.++|.++++++++||++++++++|++||++||++||++||++++||+|||.||++||+
T Consensus 580 a~~fvsleD~l~r~fg--~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~AQkkvE~~nf~~Rk~ll~yDdv~n~QR~~iY~ 657 (822)
T 3jux_A 580 SIFFLSLEDDLLRIFG--SEQIGKVMNILKIEEGQPIQHPMLSKLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYS 657 (822)
T ss_dssp EEEEEETTSHHHHHTT--HHHHHHHHHHSSCCSSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHH--HHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999632178888631--89999999975999884642389999999999999985699999999888779999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHCCCC
Q ss_conf 99987611877779999999999999998700799999875678999999999860001222106773101222101443
Q 002707 647 LRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPE 726 (890)
Q Consensus 647 ~R~~iL~~~~~dl~~~I~~~~~~~i~~iv~~~~~~~~~~~~wd~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (890)
+|++||.++ ++.+.|..|++++++.+|+.+.+ +++||+++|...+...+.
T Consensus 658 ~R~~iL~~~--~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~------------------------ 707 (822)
T 3jux_A 658 LRDQILLEK--DYDEYLKDIFEDVVSTRVEEFCS----GKNWDIESLKNSLSFFPA------------------------ 707 (822)
T ss_dssp HHHHHHHCS--CCHHHHHHHHHHHHHHHHHHHSS----TTCCCCHHHHHHTTTSCS------------------------
T ss_pred HHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHCC----HHHCCHHHHHHHHHHHHC------------------------
T ss_conf 999986367--28999999999999999997278----101159999999997211------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 33234457778999999863222122231013444312565432434421269999999999999999887631189899
Q 002707 727 LNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVY 806 (890)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~y~~k~~~~~~~~~~ 806 (890)
..+... .. .....+++++++.+.+.+.|..+.+ ..+++
T Consensus 708 -------------~~~~~~-~~-------------------------~~~~~~~~~~~l~~~~~~~y~~k~~--~~~~~- 745 (822)
T 3jux_A 708 -------------GLFDLD-EK-------------------------QFSSSEELHDYLFNRLWEEYQRKKQ--EIGED- 745 (822)
T ss_dssp -------------CSCTTS-SC-------------------------CCSSHHHHHHHHHHHHHHHHHHHHH--HHGGG-
T ss_pred -------------CCCCCC-CC-------------------------CCCCHHHHHHHHHHHHHHHHHHHHH--HHHHH-
T ss_conf -------------246766-44-------------------------4479999999999999999999999--86699-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999699999999999899760001124789178899999999999999999999998471344
Q 002707 807 MKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWS 879 (890)
Q Consensus 807 i~~~ER~ilL~~ID~~W~eHLd~Md~LRegI~LRsYaQkDPL~EYk~Eaf~lF~~M~~~Ik~eiv~~Ll~~~~ 879 (890)
+++++|.++|++||.+|++||++||+||+|||||+||||||++|||+|||+||+.|+.+|+.+++++++++.-
T Consensus 746 ~~~~er~i~L~~iD~~W~~hl~~md~Lr~~i~lr~y~q~dPl~eyk~e~~~~F~~m~~~i~~~~~~~~~~~~~ 818 (822)
T 3jux_A 746 YRKVIRFLMLRIIDDHWRRYLEEVEHVKEAVQLRSYGQKDPIVEFKKETYYMFDEMMRRINDTIANYVLRVHH 818 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999899999999999999997546362589689999999999999999999999999999740
No 3
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=1.00 E-value=1 Score=1507.72 Aligned_cols=732 Identities=42% Similarity=0.684 Sum_probs=662.1
Q ss_pred CCCCCHHHHHHHHHHCCCEEECCC-----------------------CEECCCHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 998504689899850697210000-----------------------000150020200999999999918813102689
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 ~r~ydvQl~gg~~L~~G~iaEM~T-----------------------VvT~NdyLA~RD~e~~~~~y~~LGlsvg~i~~~ 57 (890)
|||||||++|+++||+|+||||+| |||+|+|||.||++||+++|++|||+|+++..+
T Consensus 110 ~rP~~VQ~~~ip~Ll~G~Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg 189 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILAT 189 (922)
T ss_dssp CCCCHHHHHHHHHHHTTEEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99888999977868559789706897319999999999997289869995789999999999999986649869999699
Q ss_pred CCHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCCHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99888850337998341396303667753106371000036999963477216880355089986114578887976369
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~r~~aY~~dI~YgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiiSg~~~~~~~~y~ 137 (890)
+++++|+.+|.|||||||+++||||||||+|+.+.+.+++| +++|+|||||||||||+|+||||||||.+.....|.
T Consensus 190 ~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr---~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~ 266 (922)
T 1nkt_A 190 MTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQR---GHHYAIVDEVDSILIDEARTPLIISGPADGASNWYT 266 (922)
T ss_dssp CCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---CCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHH
T ss_pred CCHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCHHHHCCC---CCCEEEEECHHHHHHHCCCCCEEECCCCCCCHHHHH
T ss_conf 99999998669998998861755899986543237661647---787899937678877347664121377875326999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCEEEECCEEEE
Q ss_conf 999999983059784996778845416846999998706899778888-2999999999999851259430886894999
Q 002707 138 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 216 (890)
Q Consensus 138 ~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~dg~V~i 216 (890)
.++.++..|.++.||.+|++.++++||++|+.++|.++++++||+..+ ++.+||.+||+|+++|++|+||+|+||+|+|
T Consensus 267 ~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vvi 346 (922)
T 1nkt_A 267 EFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLI 346 (922)
T ss_dssp HHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEE
T ss_pred HHHHHHHHCCCCCCCEECCCCCEEEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEE
T ss_conf 99999995754445501047636996576799999982974236872206789999999999874036400420683688
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCC
Q ss_conf 86999921369644903889999580994456874378753246772148410456894538999996609995993999
Q 002707 217 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 296 (890)
Q Consensus 217 VD~~TGR~~~gr~ws~GLHQaiEaKEgl~i~~e~~t~a~IS~q~~Fr~Y~kL~GmTGTa~te~~El~~iY~l~vv~IPt~ 296 (890)
||++|||+|+|||||+|||||||+||+++|+++++|+++||+||||++|+||+||||||+||+.||.++||++|++||||
T Consensus 347 VDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn 426 (922)
T 1nkt_A 347 VDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTN 426 (922)
T ss_dssp BCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCS
T ss_pred EECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf 75013751678634304668886114650156652344122388887655663066675558999999849876993899
Q ss_pred CCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHH
Q ss_conf 98553228980894933799999999998452799699982433238999999995799805841698540208999986
Q 002707 297 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 376 (890)
Q Consensus 297 kp~~R~d~pd~i~~t~~~k~~aii~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLna~~k~~~~Ea~IIa~ 376 (890)
+|++|+|+||.+|.+..+||.+|++++.++|..||||||||.|++.||.||..|++.||+|++||| +++++|++||++
T Consensus 427 ~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLna--k~~~rEa~iia~ 504 (922)
T 1nkt_A 427 MPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNA--KYHEQEATIIAV 504 (922)
T ss_dssp SCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECS--SCHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECC--CHHHHHHHHHHH
T ss_conf 985530478679847899999999999998726996899979799999999999977998898119--716899999996
Q ss_pred CCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 29988599981788789420049971477899999999888764201222456789940134542023047999999998
Q 002707 377 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 456 (890)
Q Consensus 377 AG~~G~VTIATNMAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (890)
||++|+||||||||||||||++|||++++++..++...+ .|. .
T Consensus 505 agr~G~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~------~~~---~---------------------------- 547 (922)
T 1nkt_A 505 AGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGL------DPV---E---------------------------- 547 (922)
T ss_dssp TTSTTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTC------CTT---T----------------------------
T ss_pred CCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHCCC------CCC---C----------------------------
T ss_conf 699984998366131583555789888999988765136------654---4----------------------------
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC
Q ss_conf 75513446773023322100024566654443899998873202579997146888886642100123444123552386
Q 002707 457 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 536 (890)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 536 (890)
. ++ .....|...+.++++.|..++++|+++||
T Consensus 548 ----------~---------------------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 579 (922)
T 1nkt_A 548 ----------T---------------------PE-----------------EYEAAWHSELPIVKEEASKEAKEVIEAGG 579 (922)
T ss_dssp ----------S---------------------HH-----------------HHHHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred ----------C---------------------CH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ----------5---------------------22-----------------56777788999999999876667875387
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 28993158982236765201224589999347998657235541158914799999752999998755306999999999
Q 002707 537 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 616 (890)
Q Consensus 537 L~VIgTerheS~RID~QLrGRaGRQGdPGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 616 (890)
||||||+||+|+|+|+|+|||||||||||+|+||+|++|++|++|| ++++..+|.++++++++||+++++++++++||
T Consensus 580 lhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ie~aQ 657 (922)
T 1nkt_A 580 LYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFN--GAALETLLTRLNLPDDVPIEAKMVTRAIKSAQ 657 (922)
T ss_dssp EEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTT--HHHHHHHHHHTTCCTTSCCCCHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 6798526899889998870553669998159999653688999861--58899999980899876545389999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHH
Q ss_conf 999977689999998656877898899999999876118777799999999999999987-0079999987567899999
Q 002707 617 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIF-GNVDPLKHPRYWSLDKLLK 695 (890)
Q Consensus 617 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iY~~R~~iL~~~~~dl~~~I~~~~~~~i~~iv~-~~~~~~~~~~~wd~~~L~~ 695 (890)
++||++||++||++++||+|||.||++||++|++||.+ +++.+.|..|++++++.+|+ .+ +...+++||+++|..
T Consensus 658 kkvE~~nf~iRk~ll~yDdv~n~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~~~~~v~~~~--~~~~~~~w~~~~l~~ 733 (922)
T 1nkt_A 658 TQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILEG--ENLKDQALDMVRDVITAYVDGAT--GEGYAEDWDLDALWT 733 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHTT--SSSCSSCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHC--CCCCCHHCCHHHHHH
T ss_conf 99876418999999988999999999999999999727--86799999999999999998754--457800117999999
Q ss_pred HHHHHHCHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99998600012221067731012221014433323445777899999986322212223101344431256543243442
Q 002707 696 EFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYR 775 (890)
Q Consensus 696 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (890)
.+...++.. ++. .+|... +.. .....
T Consensus 734 ~~~~~~~~~-------~~~-------------------------------------------~~~~~~--~~~--~~~~~ 759 (922)
T 1nkt_A 734 ALKTLYPVG-------ITA-------------------------------------------DSLTRK--DHE--FERDD 759 (922)
T ss_dssp HHHHHSCCC-------SCT-------------------------------------------TTTC--------------
T ss_pred HHHHHCCCC-------CCH-------------------------------------------HHHHHH--HCC--CCCCC
T ss_conf 999972878-------897-------------------------------------------887543--022--23346
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 1269999999999999999887631--18989999999999999996999999999998997600011247891788999
Q 002707 776 ATTNLLRKYLGDILIASYLNVVQES--RYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKI 853 (890)
Q Consensus 776 ~~~~~l~~~L~~~~~~~y~~k~~~~--~~~~~~i~~~ER~ilL~~ID~~W~eHLd~Md~LRegI~LRsYaQkDPL~EYk~ 853 (890)
.+.+++++++.+.+.+.|..+.... ..+++.++++||.++|++||.+|+|||++||+||+|||||+||||||++|||+
T Consensus 760 ~~~~~~~~~l~~~~~~~y~~k~~~~~~~~~~~~~~~~er~~~L~~iD~~W~eHl~~md~Lr~~i~lr~y~q~dPl~eyk~ 839 (922)
T 1nkt_A 760 LTREELLEALLKDAERAYAAREAELEEIAGEGAMRQLERNVLLNVIDRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQR 839 (922)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBTTBCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999999999999999998741347989999999999999998999999999999999875453436997999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999998471344766
Q 002707 854 DGCRFFISMLSATRRLTVESLVQYWSSPM 882 (890)
Q Consensus 854 Eaf~lF~~M~~~Ik~eiv~~Ll~~~~~~~ 882 (890)
|||+||+.|+.+|+.+++++||++.+...
T Consensus 840 e~~~~F~~m~~~i~~~~~~~l~~~~~~~~ 868 (922)
T 1nkt_A 840 EGYDMFMAMLDGMKEESVGFLFNVTVEAV 868 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999999984663677
No 4
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=1.00 E-value=1 Score=1455.03 Aligned_cols=713 Identities=40% Similarity=0.641 Sum_probs=656.1
Q ss_pred CCCCCHHHHHHHHHHCCCEEECCC-----------------------CEECCCHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 998504689899850697210000-----------------------000150020200999999999918813102689
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 ~r~ydvQl~gg~~L~~G~iaEM~T-----------------------VvT~NdyLA~RD~e~~~~~y~~LGlsvg~i~~~ 57 (890)
|+|||||++|+++||+|+||||+| |+|+|+|||.||++||+++|++||++|+++..+
T Consensus 73 ~~p~~VQ~~~i~~ll~G~Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG 152 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG 152 (853)
T ss_dssp CCCCHHHHHHHHHHHSSEEEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99886888336213377066406985589999999999997199479985879999999999999997649869999599
Q ss_pred CCHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCCHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99888850337998341396303667753106371000036999963477216880355089986114578887976369
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~r~~aY~~dI~YgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiiSg~~~~~~~~y~ 137 (890)
++++.|+.+|.|||+|||++.||||||||+|..++++++++ ++.|+||||||+||+|+|++||||||+.+.....|.
T Consensus 153 ~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~---~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~ 229 (853)
T 2fsf_A 153 MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQR---KLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYK 229 (853)
T ss_dssp CCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---SCCEEEESCHHHHTTTTTTCEEEEEEC---------
T ss_pred CCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCHHHHCCC---CCCEEEECCHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 99999998649998998870556899985332458671426---886899875677887357664100578864045999
Q ss_pred HHHHHHHHHCCC-----------CCEEEECCCCEEECCHHHHHHHHHHH---CC----CCCCCCCC-CHHHHHHHHHHHH
Q ss_conf 999999983059-----------78499677884541684699999870---68----99778888-2999999999999
Q 002707 138 VAAKVAELLVQG-----------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 198 (890)
Q Consensus 138 ~~~~~v~~l~~~-----------~~y~vd~~~k~v~Lte~G~~~~e~~~---~~----~~l~~~~~-~~~~~i~~Al~A~ 198 (890)
.++.++..|.++ .||.+|++.++++||+.|+.++|+++ ++ ++||++.+ ++.+||.+||+|+
T Consensus 230 ~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~ 309 (853)
T 2fsf_A 230 RVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAH 309 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHCHHHHCCCCCCCCCCCCCEECCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999996522002333345666652352344469976778999999987577655664456861104789999999999
Q ss_pred HHCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHCCCCCCCCCCCHHH
Q ss_conf 85125943088689499986999921369644903889999580994456874378753246772148410456894538
Q 002707 199 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 278 (890)
Q Consensus 199 ~l~~~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaiEaKEgl~i~~e~~t~a~IS~q~~Fr~Y~kL~GmTGTa~te 278 (890)
.+|++|+||+|+||+|+|||++|||+|+|||||+||||||||||+++|++++.|+++||+|+||++|++|+||||||+|+
T Consensus 310 ~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te 389 (853)
T 2fsf_A 310 ALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTE 389 (853)
T ss_dssp -----------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCC
T ss_pred HHHHCCCCCEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHH
T ss_conf 87403730053168179974235744678755234557887124631046641333121687886655662077776458
Q ss_pred HHHHHHHHCCCEEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCE
Q ss_conf 99999660999599399998553228980894933799999999998452799699982433238999999995799805
Q 002707 279 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 358 (890)
Q Consensus 279 ~~El~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~aii~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~ 358 (890)
+.||+++||++|++||||+|++|+|+||.+|.+..+||.|+++++.++|..||||||||.|++.||.||..|++.||+|+
T Consensus 390 ~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~ 469 (853)
T 2fsf_A 390 AFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHN 469 (853)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHCCCEEECCCCCCCEEECCCCEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEE
T ss_conf 99999985985798689997203327967983899999999999998752799789997938999999999997799889
Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 84169854020899998629988599981788789420049971477899999999888764201222456789940134
Q 002707 359 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 438 (890)
Q Consensus 359 vLna~~k~~~~Ea~IIa~AG~~G~VTIATNMAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (890)
+||| +++++|++||++||++|+||||||||||||||++||||++++.. +. +.+
T Consensus 470 vLna--k~~~rEa~iia~agr~G~VtIATnmAgRGtDI~l~gn~~~~~~~---------~~-~~~--------------- 522 (853)
T 2fsf_A 470 VLNA--KFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAA---------LE-NPT--------------- 522 (853)
T ss_dssp ECCT--TCHHHHHHHHHTTTSTTCEEEEESCCSSCSCCCTTCCHHHHHHH---------CS-SCC---------------
T ss_pred EECC--CHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH---------CC-CCH---------------
T ss_conf 8409--72699999999659998399865500288574189856765420---------12-212---------------
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 54202304799999999875513446773023322100024566654443899998873202579997146888886642
Q 002707 439 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 518 (890)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (890)
.+.+.
T Consensus 523 ---------------------------------------------------------------------------~~~~~ 527 (853)
T 2fsf_A 523 ---------------------------------------------------------------------------AEQIE 527 (853)
T ss_dssp ---------------------------------------------------------------------------SSHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
T ss_conf ---------------------------------------------------------------------------67899
Q ss_pred HHCCCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHCCCC
Q ss_conf 10012344412355238628993158982236765201224589999347998657235541158914799999752999
Q 002707 519 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 598 (890)
Q Consensus 519 ~~~~~~~~~~~~V~~~GGL~VIgTerheS~RID~QLrGRaGRQGdPGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~ 598 (890)
++++.|..++++|.++||||||||++|+|+|+|+|++||||||||||+|+||+|++|++|+.|| ++++..+|.+++++
T Consensus 528 ~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~r~f~--~~~~~~~~~~~~~~ 605 (853)
T 2fsf_A 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA--SDRVSGMMRKLGMK 605 (853)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGGGTTC--CHHHHTTGGGGCCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHH--HHHHHHHHHHHCCC
T ss_conf 9988765544678861872899725998889997600431358997059999654288898753--78999999860799
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99875530699999999999997768999999865687789889999999987611877779999999999999998700
Q 002707 599 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 678 (890)
Q Consensus 599 ~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iY~~R~~iL~~~~~dl~~~I~~~~~~~i~~iv~~~ 678 (890)
+++||+++++++++++||+++|++||++||++++||+|||.||++||++|+++|.++ ++.+.|..|++++++.+|+.+
T Consensus 606 ~~~~i~~~~~~~~i~~aq~~ve~~~~~~Rk~ll~yddv~n~QR~~iy~~R~~~l~~~--~~~~~i~~~~~~~~~~~~~~~ 683 (853)
T 2fsf_A 606 PGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDVS--DVSETINSIREDVFKATIDAY 683 (853)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHH
T ss_conf 843233499999999888776421568888899899999999999999999997378--579999999999999999985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 79999987567899999999986000122210677310122210144333234457778999999863222122231013
Q 002707 679 VDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLK 758 (890)
Q Consensus 679 ~~~~~~~~~wd~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (890)
.++...+++|++++|...+...++..+ .+.
T Consensus 684 ~~~~~~~~~w~~~~l~~~~~~~~~~~~--------------------------------------------------~~~ 713 (853)
T 2fsf_A 684 IPPQSLEEMWDIPGLQERLKNDFDLDL--------------------------------------------------PIA 713 (853)
T ss_dssp SCTTCCGGGCCHHHHHHHHHHHHCCCC--------------------------------------------------CHH
T ss_pred CCCCCCCHHHCHHHHHHHHHHHCCCCC--------------------------------------------------CHH
T ss_conf 586556002059999999998728788--------------------------------------------------878
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44431256543243442126999999999999999988763118989999999999999996999999999998997600
Q 002707 759 RWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVN 838 (890)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~y~~k~~~~~~~~~~i~~~ER~ilL~~ID~~W~eHLd~Md~LRegI~ 838 (890)
+|... ....+.+++++++.+.+.+.|..+. ...+++.++++||.++|++||.+|+|||++||+||+|||
T Consensus 714 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~k~--~~~~~~~~~~~er~~~L~~iD~~W~~hl~~md~Lr~~i~ 782 (853)
T 2fsf_A 714 EWLDK---------EPELHEETLRERILAQSIEVYQRKE--EVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIH 782 (853)
T ss_dssp HHHHH---------CTTCCHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHH---------CCCCCHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87543---------0359999999999999999999998--753999999999999999998999999999999999875
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 011247891788999999999999999999999984713447665
Q 002707 839 VRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSSPME 883 (890)
Q Consensus 839 LRsYaQkDPL~EYk~Eaf~lF~~M~~~Ik~eiv~~Ll~~~~~~~~ 883 (890)
||+||||||++|||+|||+||+.|+.+|+.+++++||++.+..-+
T Consensus 783 lr~y~q~dP~~ey~~e~~~~F~~m~~~i~~~~~~~l~~~~~~~~~ 827 (853)
T 2fsf_A 783 LRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPE 827 (853)
T ss_dssp TSSCSSSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 452536997999999999999999999999999999846088741
No 5
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=1.00 E-value=1 Score=1385.51 Aligned_cols=680 Identities=42% Similarity=0.702 Sum_probs=638.1
Q ss_pred CCCCCHHHHHHHHHHCCCEEECCC-----------------------CEECCCHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 998504689899850697210000-----------------------000150020200999999999918813102689
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 ~r~ydvQl~gg~~L~~G~iaEM~T-----------------------VvT~NdyLA~RD~e~~~~~y~~LGlsvg~i~~~ 57 (890)
++|||||++|+++||+|+||||+| |+|+|+|||.||++||+++|++|||+|+++..+
T Consensus 82 ~~pt~VQ~~~ip~ll~G~Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg 161 (844)
T 1tf5_A 82 MFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNS 161 (844)
T ss_dssp CCCCHHHHHHHHHHHTTSEEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99767999766787289778705982789999999999987289889996989999999999999986659849999699
Q ss_pred CCHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCCHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99888850337998341396303667753106371000036999963477216880355089986114578887976369
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~r~~aY~~dI~YgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiiSg~~~~~~~~y~ 137 (890)
+++++++.+|.|||||||+++||||||||+|..+.+.+++| +++|+|||||||||||+|+|||||||+.+.++..|.
T Consensus 162 ~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr---~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~ 238 (844)
T 1tf5_A 162 MSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR---PLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYV 238 (844)
T ss_dssp SCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---CCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHH
T ss_pred CCHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCHHHHCCC---CCCEEEECCHHHHHHHCCCCCHHHCCCCCCCHHHHH
T ss_conf 99999998659998998953545799987553145552646---787899885655423003210010587632125899
Q ss_pred HHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCEEEECCEEEE
Q ss_conf 999999983059784996778845416846999998706899778888-2999999999999851259430886894999
Q 002707 138 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 216 (890)
Q Consensus 138 ~~~~~v~~l~~~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~dg~V~i 216 (890)
.++.++..|.++.||.+|++.++++||++|+.++|.++++++||+..+ .|.+||.+||+|+.+|++|+||+|+||+|+|
T Consensus 239 ~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~i 318 (844)
T 1tf5_A 239 QANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVI 318 (844)
T ss_dssp HHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEE
T ss_pred HHHHHHHHCCCCCCCEECCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCEEEE
T ss_conf 99999995764456312135415996487799999983952237885530699999999999874238860775580687
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCC
Q ss_conf 86999921369644903889999580994456874378753246772148410456894538999996609995993999
Q 002707 217 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 296 (890)
Q Consensus 217 VD~~TGR~~~gr~ws~GLHQaiEaKEgl~i~~e~~t~a~IS~q~~Fr~Y~kL~GmTGTa~te~~El~~iY~l~vv~IPt~ 296 (890)
||++|||+|+||+||+|||||||+||+++|++++.|+++||+|+||++|++|+||||||++++.||.++|+++|+.||||
T Consensus 319 vDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn 398 (844)
T 1tf5_A 319 VDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN 398 (844)
T ss_dssp BCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCS
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCCEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEECCC
T ss_conf 52002651578736636678886224501045642332010788898876530677665046999999848863883689
Q ss_pred CCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHH
Q ss_conf 98553228980894933799999999998452799699982433238999999995799805841698540208999986
Q 002707 297 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 376 (890)
Q Consensus 297 kp~~R~d~pd~i~~t~~~k~~aii~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLna~~k~~~~Ea~IIa~ 376 (890)
+|++|+|+++.+|.+..+||.++++.+.++|..||||||||.|++.||.|+..|.+.|++|++||| +++++|++|+++
T Consensus 399 ~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg--~~~~rEr~ii~~ 476 (844)
T 1tf5_A 399 RPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNA--KNHEREAQIIEE 476 (844)
T ss_dssp SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECS--SCHHHHHHHHTT
T ss_pred CCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHH
T ss_conf 985224677479837899999999999998736996899978799999999999978998898648--852999999997
Q ss_pred CCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 29988599981788789420049971477899999999888764201222456789940134542023047999999998
Q 002707 377 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 456 (890)
Q Consensus 377 AG~~G~VTIATNMAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (890)
||++|+||||||||||||||+||
T Consensus 477 ag~~g~VlIATdmAgRG~DI~l~--------------------------------------------------------- 499 (844)
T 1tf5_A 477 AGQKGAVTIATNMAGRGTDIKLG--------------------------------------------------------- 499 (844)
T ss_dssp TTSTTCEEEEETTSSTTCCCCCC---------------------------------------------------------
T ss_pred CCCCCEEEEECCCCCCCCCCCCC---------------------------------------------------------
T ss_conf 69998399858742367574565---------------------------------------------------------
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC
Q ss_conf 75513446773023322100024566654443899998873202579997146888886642100123444123552386
Q 002707 457 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 536 (890)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 536 (890)
++|+++||
T Consensus 500 ------------------------------------------------------------------------~~V~~~gg 507 (844)
T 1tf5_A 500 ------------------------------------------------------------------------EGVKELGG 507 (844)
T ss_dssp ------------------------------------------------------------------------TTSGGGTS
T ss_pred ------------------------------------------------------------------------CHHHHCCC
T ss_conf ------------------------------------------------------------------------20221587
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 28993158982236765201224589999347998657235541158914799999752999998755306999999999
Q 002707 537 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 616 (890)
Q Consensus 537 L~VIgTerheS~RID~QLrGRaGRQGdPGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 616 (890)
||||+|++|+|+|+|+|++||||||||||+|+||+|++|++|+.|+ ++++..+|.+++++++++|+++++++++++||
T Consensus 508 l~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~r~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aq 585 (844)
T 1tf5_A 508 LAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFG--AERTMAMLDRFGMDDSTPIQSKMVSRAVESSQ 585 (844)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSH--HHHHHHHHHHHTCCSSSCBCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHH--HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 6899706998889997510740458999748999648898999876--89998889861899843133289999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 99997768999999865687789889999999987611877779999999999999998700799999875678999999
Q 002707 617 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 696 (890)
Q Consensus 617 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~iY~~R~~iL~~~~~dl~~~I~~~~~~~i~~iv~~~~~~~~~~~~wd~~~L~~~ 696 (890)
+++|++||++||++++||+|||.||++||++|+++|.+ +++.+.|..|++++++.+|+.+.++...+++|++++|...
T Consensus 586 ~~ve~~~~~~rk~ll~yddv~~~QR~~iy~~R~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~~ 663 (844)
T 1tf5_A 586 KRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDS--ENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDL 663 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SCCHHHHHHHHHHHHHHHHHHTSCSSCCTTCSSCCCHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 88753117899999999999999999999999999728--9679999999999999999985577677001269999999
Q ss_pred HHHHHCHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99986000122210677310122210144333234457778999999863222122231013444312565432434421
Q 002707 697 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 776 (890)
Q Consensus 697 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (890)
+...++. . .+.+... | ...
T Consensus 664 ~~~~~~~--~---------------------------------~~~~~~~-------------~-------------~~~ 682 (844)
T 1tf5_A 664 INTTYLD--E---------------------------------GALEKSD-------------I-------------FGK 682 (844)
T ss_dssp HHTTTSC--T---------------------------------TSCSSSS-------------C-------------SSC
T ss_pred HHHHCCC--C---------------------------------CCCCHHH-------------H-------------HCC
T ss_conf 9986076--6---------------------------------7999899-------------8-------------328
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 26999999999999999988763118989999999999999996999999999998997600011247891788999999
Q 002707 777 TTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGC 856 (890)
Q Consensus 777 ~~~~l~~~L~~~~~~~y~~k~~~~~~~~~~i~~~ER~ilL~~ID~~W~eHLd~Md~LRegI~LRsYaQkDPL~EYk~Eaf 856 (890)
+.+++++++.+.+.+.|..+. ...+++.++++||.++|++||.+|+|||++||+||+|||||+||||||++|||+|||
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~~l~~~D~~W~~hl~~m~~lr~~i~lr~~~q~dp~~ey~~e~~ 760 (844)
T 1tf5_A 683 EPDEMLELIMDRIITKYNEKE--EQFGKEQMREFEKVIVLRAVDSKWMDHIDAMDQLRQGIHLRAYAQTNPLREYQMEGF 760 (844)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--HHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSCSSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 999999999999999999988--740999999999999999998999999999999998864423357897999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999999847134476
Q 002707 857 RFFISMLSATRRLTVESLVQYWSSP 881 (890)
Q Consensus 857 ~lF~~M~~~Ik~eiv~~Ll~~~~~~ 881 (890)
+||+.|+.+|+.+++++||++.+..
T Consensus 761 ~~f~~m~~~i~~~~~~~l~~~~~~~ 785 (844)
T 1tf5_A 761 AMFEHMIESIEDEVAKFVMKAEIEN 785 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999998521555
No 6
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=124.94 Aligned_cols=133 Identities=21% Similarity=0.264 Sum_probs=106.5
Q ss_pred CEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHH-HCCCCCCEEE
Q ss_conf 089493379999999999845279969998243323899999999579980584169854020899998-6299885999
Q 002707 307 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 385 (890)
Q Consensus 307 ~i~~t~~~k~~aii~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLna~~k~~~~Ea~IIa-~AG~~G~VTI 385 (890)
.++.+..+|..++.+-+... .+.++||+|.+.+.++.++..|...|+.+..|++.-...+++.-+-. +.| ...|.|
T Consensus 7 ~i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g-~~~vLV 83 (300)
T 3i32_A 7 AVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG-EVRVLV 83 (300)
T ss_dssp EEECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT-SCCEEE
T ss_pred EEECCHHHHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC-CCEEEE
T ss_conf 99888889999999999856--999889998999999999999986799889996888999999999975237-836999
Q ss_pred ECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 81788789420049971477899999999888764201222456789940134542023047999999998755134467
Q 002707 386 STNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEG 465 (890)
Q Consensus 386 ATNMAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (890)
|||+|+||.||.
T Consensus 84 aT~va~~Gidi~-------------------------------------------------------------------- 95 (300)
T 3i32_A 84 ATDVAARGLDIP-------------------------------------------------------------------- 95 (300)
T ss_dssp ECSTTTCSTTCC--------------------------------------------------------------------
T ss_pred EECHHHCCCCCC--------------------------------------------------------------------
T ss_conf 803121680205--------------------------------------------------------------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEECCCC
Q ss_conf 73023322100024566654443899998873202579997146888886642100123444123552386289931589
Q 002707 466 KSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLH 545 (890)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerh 545 (890)
.|. |||....|
T Consensus 96 ----------------------------------------------------------------~v~-----~VI~~d~p 106 (300)
T 3i32_A 96 ----------------------------------------------------------------QVD-----LVVHYRMP 106 (300)
T ss_dssp ----------------------------------------------------------------CCS-----EEEESSCC
T ss_pred ----------------------------------------------------------------CEE-----EEEECCCC
T ss_conf ----------------------------------------------------------------603-----79974789
Q ss_pred CCHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHH
Q ss_conf 8223676520122458999934799865723554
Q 002707 546 ESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQ 579 (890)
Q Consensus 546 eS~RID~QLrGRaGRQGdPGss~f~lSleD~l~~ 579 (890)
.|.....|..|||||.|.+|.+.+|++-+|..+.
T Consensus 107 ~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~ 140 (300)
T 3i32_A 107 DRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDV 140 (300)
T ss_dssp SSTTHHHHHHTCCC-----CEEEEEECSSTHHHH
T ss_pred CCHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHH
T ss_conf 8988999971676748997449999673788999
No 7
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=117.37 Aligned_cols=128 Identities=14% Similarity=0.120 Sum_probs=83.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCE--EECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf 8410456894538999996609995--99399998553228980894933799999999998452799699982433238
Q 002707 266 PKLSGMTGTAKTEEKEFLKMFQMPV--IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENS 343 (890)
Q Consensus 266 ~kL~GmTGTa~te~~El~~iY~l~v--v~IPt~kp~~R~d~pd~i~~t~~~k~~aii~ei~~~~~~grPVLIgt~sI~~S 343 (890)
.++.+||+|...+..++...|--+. +.+.........-....+......|...+++.+.+. +.++||+|.+...+
T Consensus 237 ~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a 313 (434)
T 2db3_A 237 HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ---ADGTIVFVETKRGA 313 (434)
T ss_dssp CEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHC---CTTEEEECSSHHHH
T ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC---CCCEEEEEECCHHH
T ss_conf 569999556898999999986469889995356666665336999937177799999999857---99879999471899
Q ss_pred HHHHHHHHHCCCCCEEECCCCCCHHHHHHHHH-HCCCCCCEEEECCCCCCCCCEE
Q ss_conf 99999999579980584169854020899998-6299885999817887894200
Q 002707 344 EYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 344 E~ls~~L~~~gi~h~vLna~~k~~~~Ea~IIa-~AG~~G~VTIATNMAGRGTDIk 397 (890)
+.++..|...|++...+++.-...+++..+-. +.| ...|.|||++|+||.||.
T Consensus 314 ~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 314 DFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG-SMKVLIATSVASRGLDIK 367 (434)
T ss_dssp HHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS-SCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC-CCCEEEECHHHHCCCCCC
T ss_conf 999999986799879984999999999999999859-993999820645778832
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=117.33 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=79.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Q ss_conf 41045689453899999660999599399998553228980894933799999999998452799699982433238999
Q 002707 267 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYL 346 (890)
Q Consensus 267 kL~GmTGTa~te~~El~~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~aii~ei~~~~~~grPVLIgt~sI~~SE~l 346 (890)
++.+||+|...+..++...|--+...++...+.. . ....+..+...+..++.+.+. ..+.++||.|.+++.++.+
T Consensus 180 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l 254 (367)
T 1hv8_A 180 RILLFSATMPREILNLAKKYMGDYSFIKAKINAN-I-EQSYVEVNENERFEALCRLLK---NKEFYGLVFCKTKRDTKEL 254 (367)
T ss_dssp EEEEECSSCCHHHHHHHHHHCCSEEEEECCSSSS-S-EEEEEECCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCC-C-EEEEEEECHHHHHHHHHHHHH---CCCCCEEEEECCHHHHHHH
T ss_conf 1999961267789999999769973997037777-4-599998175889999999981---5898479997879999999
Q ss_pred HHHHHHCCCCCEEECCCCCCHHHHHHHHH--HCCCCCCEEEECCCCCCCCCEE
Q ss_conf 99999579980584169854020899998--6299885999817887894200
Q 002707 347 SDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 397 (890)
Q Consensus 347 s~~L~~~gi~h~vLna~~k~~~~Ea~IIa--~AG~~G~VTIATNMAGRGTDIk 397 (890)
+..|...|+....+++.....+++ +++. +.| ...|.|||+++++|.||.
T Consensus 255 ~~~L~~~~~~~~~~~~~~~~~~r~-~~~~~f~~~-~~~vlv~T~~~~~Gid~~ 305 (367)
T 1hv8_A 255 ASMLRDIGFKAGAIHGDLSQSQRE-KVIRLFKQK-KIRILIATDVMSRGIDVN 305 (367)
T ss_dssp HHHHHHTTCCEEEECSSSCHHHHH-HHHHHHHTT-SSSEEEECTTHHHHCCCS
T ss_pred HHHHHHCCCCEEEEECCCCHHHHH-HHHHHHHCC-CCEEEEECCHHHCCCCCC
T ss_conf 999996598769961999999999-999999769-980999877443577700
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=1.00 E-value=1 Score=116.79 Aligned_cols=169 Identities=20% Similarity=0.199 Sum_probs=113.1
Q ss_pred CCCCCCCCCHHHHHHHH-HHHCCCEEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf 41045689453899999-66099959939999855322898089493379999999999845279969998243323899
Q 002707 267 KLSGMTGTAKTEEKEFL-KMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY 345 (890)
Q Consensus 267 kL~GmTGTa~te~~El~-~iY~l~vv~IPt~kp~~R~d~pd~i~~t~~~k~~aii~ei~~~~~~grPVLIgt~sI~~SE~ 345 (890)
++.+||+|+.....++. ..++-.+..................+.....+...+..-+.. ..+.++||.|.+++.++.
T Consensus 196 ~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~ 273 (400)
T 1s2m_A 196 QSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSK--LQINQAIIFCNSTNRVEL 273 (400)
T ss_dssp EEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHHHH--CCCCCEEEEEECHHHHHH
T ss_conf 699999568878999999975898378832434457750689983523189999999864--377857999924899999
Q ss_pred HHHHHHHCCCCCEEECCCCCCHHHHHHHHH--HCCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999579980584169854020899998--629988599981788789420049971477899999999888764201
Q 002707 346 LSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREAL 423 (890)
Q Consensus 346 ls~~L~~~gi~h~vLna~~k~~~~Ea~IIa--~AG~~G~VTIATNMAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~ 423 (890)
++..|...|+....+++.-...+++ +++. +.| ...|.|||+++++|.||.-
T Consensus 274 l~~~L~~~~~~~~~~~~~~~~~~r~-~~~~~f~~g-~~~vLv~T~~~~~Gidip~------------------------- 326 (400)
T 1s2m_A 274 LAKKITDLGYSCYYSHARMKQQERN-KVFHEFRQG-KVRTLVCSDLLTRGIDIQA------------------------- 326 (400)
T ss_dssp HHHHHHHHTCCEEEECTTSCHHHHH-HHHHHHHTT-SSSEEEESSCSSSSCCCTT-------------------------
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHH-HHHHHHHCC-CCCEEEECCCCCCCCCCCC-------------------------
T ss_conf 9999986699769851779989999-999998659-9809998673114788667-------------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 22245678994013454202304799999999875513446773023322100024566654443899998873202579
Q 002707 424 NVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMY 503 (890)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (890)
T Consensus 327 -------------------------------------------------------------------------------- 326 (400)
T 1s2m_A 327 -------------------------------------------------------------------------------- 326 (400)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCH
Q ss_conf 9971468888866421001234441235523862899315898223676520122458999934799865723
Q 002707 504 PLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDE 576 (890)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheS~RID~QLrGRaGRQGdPGss~f~lSleD~ 576 (890)
+. +||....+.|..--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 327 ---------------------------~~-----~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~ 367 (400)
T 1s2m_A 327 ---------------------------VN-----VVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDR 367 (400)
T ss_dssp ---------------------------EE-----EEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGH
T ss_pred ---------------------------CC-----EEEEECCCCCHHHHHHHCCHHCCCCCCCEEEEEECCCHH
T ss_conf ---------------------------88-----899958999988978745030379898469998654069
No 10
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=1.00 E-value=1 Score=116.43 Aligned_cols=166 Identities=21% Similarity=0.233 Sum_probs=114.4
Q ss_pred CCCCCCCCCHHHH-HHHHHHHCCC---EEECCCCCCCCCCCCCCCEEE--CHHHHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 4104568945389-9999660999---599399998553228980894--933799999999998452799699982433
Q 002707 267 KLSGMTGTAKTEE-KEFLKMFQMP---VIEVPTNLPNIRVDLPIQSFA--TARGKWEYARQEVESMFRLGRPVLVGSTSV 340 (890)
Q Consensus 267 kL~GmTGTa~te~-~El~~iY~l~---vv~IPt~kp~~R~d~pd~i~~--t~~~k~~aii~ei~~~~~~grPVLIgt~sI 340 (890)
.+.+||+|+.... ..+.+..++. ++..+.++|..+... ... ....+...+++.+... ..+.++||.|.|.
T Consensus 202 ~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v---~~~~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr 277 (591)
T 2v1x_A 202 SLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEV---RQKPSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQ 277 (591)
T ss_dssp EEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEE---EECCSSHHHHHHHHHHHHTTT-TTTCEEEEECSSH
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEE---EECCCCHHHHHHHHHHHHHHH-CCCCCEEEEECCH
T ss_conf 689994579889999999983899868984677776657999---967875799999999999974-4588769996768
Q ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHH--HCCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 23899999999579980584169854020899998--6299885999817887894200499714778999999998887
Q 002707 341 ENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLL 418 (890)
Q Consensus 341 ~~SE~ls~~L~~~gi~h~vLna~~k~~~~Ea~IIa--~AG~~G~VTIATNMAGRGTDIkLgg~~~~~~~~~~~~~~~~~~ 418 (890)
+.++.++..|...|+....+++.-...+++ .++. ..| ...|.|||+++|+|.|+.
T Consensus 278 ~~~e~la~~L~~~g~~~~~~h~~l~~~~R~-~~~~~F~~g-~~~VlVAT~a~~~GID~p--------------------- 334 (591)
T 2v1x_A 278 KDSEQVTVSLQNLGIHAGAYHANLEPEDKT-TVHRKWSAN-EIQVVVATVAFGMGIDKP--------------------- 334 (591)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCHHHHH-HHHHHHHTT-SSSEEEECTTSCTTCCCS---------------------
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHH-HHHHHHHCC-CCEEEEEECHHHCCCCCC---------------------
T ss_conf 999999999997799789846987999999-999999769-983999845330687743---------------------
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64201222456789940134542023047999999998755134467730233221000245666544438999988732
Q 002707 419 TREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDK 498 (890)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (890)
T Consensus 335 -------------------------------------------------------------------------------- 334 (591)
T 2v1x_A 335 -------------------------------------------------------------------------------- 334 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCC
Q ss_conf 02579997146888886642100123444123552386289931589822367652012245899993479986572
Q 002707 499 QSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQD 575 (890)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheS~RID~QLrGRaGRQGdPGss~f~lSleD 575 (890)
.|. +||-...+.|..---|-.|||||-|.||.+..|.+.+|
T Consensus 335 -------------------------------~V~-----~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D 375 (591)
T 2v1x_A 335 -------------------------------DVR-----FVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGD 375 (591)
T ss_dssp -------------------------------CEE-----EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred -------------------------------CCC-----EEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
T ss_conf -------------------------------665-----89996999999999898540776999865999977688
Done!