BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002709
(890 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=4
Length = 750
Score = 223 bits (569), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 174/503 (34%), Positives = 267/503 (53%), Gaps = 21/503 (4%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+LIIRN+ FK +++K +F+ G V V IP D G +GFAFV+F +A A++
Sbjct: 115 RLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPD-GKMRGFAFVQFKNLLEAGKALKG 173
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNS-DSGSDD-DLGDDDAE 335
N ++ R +AVDWAV K+ Y A+ GV+ D +SG + + + +
Sbjct: 174 ANMKEIKGRTVAVDWAVAKDKYKDAQHASAP---GVKKSSDRKPKESGKKNCRVEEQVED 230
Query: 336 TASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS-DDSALVKGNKEQDS 394
+ ++ + S ++ + V + ++ + + S +DS L +G D
Sbjct: 231 SDDEEDDDSHDDEEERESTIASPVSVHKRAVKRAAPEESIEEDDSYEDSDLEEGGSSYDE 290
Query: 395 DKTVNES-AKVSDVSKLNSSKSKPKSLKQ--TEGEDELQNTIFICNLPFDLDNEEVKQRF 451
+ES A+ + + S+ K + L TEG+ T+FI NL FD + E + +
Sbjct: 291 GTVDSESSAEDQEDEDVPVSEKKKRKLPSDVTEGK-----TVFIRNLSFDSEEEALGEVL 345
Query: 452 SAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA-SKTTSGLGIFLKGRQLTVL 510
FG++ VLH T+ KG F +F T EAA ++A S G G+ L GRQL V
Sbjct: 346 QQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVD 405
Query: 511 KALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKM 570
A+ + A + K K T RNLYLA+EGLI GT AAEGVS DM+KR+ K
Sbjct: 406 LAVTRDEAAKLQTKKVKKPTGT-RNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKH 464
Query: 571 TKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKG 630
KL++ N VS+TRL ++NLPK++ +K L+KL ++A + IK+ + ++ LK
Sbjct: 465 QKLKNQNIFVSQTRLCLHNLPKAVDDKQLRKLLLEATRGEKGVR---IKECRVMRDLKGV 521
Query: 631 KVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLKQRNAK 690
K S G AF EF +H+HAL ALR NNNP+ FG + RPIVEF++++ + LK + +
Sbjct: 522 HGKMKGQSLGYAFAEFQKHEHALRALRHFNNNPEIFGSQKRPIVEFSLEDRRKLKVKELR 581
Query: 691 IQAQQQQNVESNTMDTYPNKLEK 713
IQ + Q +ES + + P K +K
Sbjct: 582 IQ-RSLQKMESKPVTSKPQKEQK 603
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV 43
+VT+KGS RGFGYV F+++ED RA +K T+ G KI V
Sbjct: 35 VVTEKGSKACRGFGYVTFSMLEDVQRA--LKEITTFEGCKIDV 75
Score = 37.4 bits (85), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK- 277
L + +P A+ ++++++FS VG V ++ + +GF +V F+ D + A+++
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 278 --FNGQKF 283
F G K
Sbjct: 66 TTFEGCKI 73
>sp|Q9NW13|RBM28_HUMAN RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3
Length = 759
Score = 186 bits (473), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 159/263 (60%), Gaps = 7/263 (2%)
Query: 432 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAAT-AAVS 490
T+FI NL FD + EE+ + FGE+ VLH T+ KG F +F T EAA ++
Sbjct: 336 TVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLA 395
Query: 491 ASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPA 550
AS G+ L GRQL V A+ + A + K K T RNLYLA+EGLI GT A
Sbjct: 396 ASPENEAGGLKLDGRQLKVDLAVTRDEAAKLQTTKVKKPTGT-RNLYLAREGLIRAGTKA 454
Query: 551 AEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSR 610
AEGVS DM+KR+ K KL+ N VSRTRL ++NLPK++ +K L+KL + A
Sbjct: 455 AEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSAT--- 511
Query: 611 ASKQKPV-IKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPE 669
S +K V IK+ + ++ LK + K S G AF EF EH+HAL ALR++NNNP+ FGP
Sbjct: 512 -SGEKGVRIKECRVMRDLKGVHGNMKGQSLGYAFAEFQEHEHALKALRLINNNPEIFGPL 570
Query: 670 HRPIVEFAVDNVQTLKQRNAKIQ 692
RPIVEF++++ + LK + +IQ
Sbjct: 571 KRPIVEFSLEDRRKLKMKELRIQ 593
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV 43
+VT+KGS RGFGYV F+++ED RA +K T+ G KI V
Sbjct: 35 VVTEKGSKACRGFGYVTFSMLEDVQRA--LKEITTFEGCKINV 75
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK- 277
L + +P A+ +++++FS VG V ++ + +GF +V F+ D + A+++
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 278 --FNGQKF 283
F G K
Sbjct: 66 TTFEGCKI 73
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
+ +K + RGFG+VQF + +A +A++ N + GR + V A+ + + K TQ
Sbjct: 145 IPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKD-----KYKDTQ 199
Query: 62 EVQAEDIEKTMDNK 75
V A EK+ ++K
Sbjct: 200 SVSAIGEEKSHESK 213
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 432 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 491
T+F+ LP +E++++ FS G V V + +K +G G++ F +E A+
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 492 SKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETND 532
T G I +TV K KKL +K +K KNE ++
Sbjct: 65 ITTFEGCKI-----NVTVAK---KKL-RNKTKEKGKNENSE 96
>sp|O74400|YOCE_SCHPO Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC4F6.14 PE=1 SV=1
Length = 674
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 149/563 (26%), Positives = 238/563 (42%), Gaps = 129/563 (22%)
Query: 218 KLIIRNIPFKAK-VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
+LIIRN+P+ K ++ FS G V + IP G GFAFV ++ AE A+
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIP-TKGGGRMCGFAFVWMKDRKAAEEAMN 166
Query: 277 KFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAET 336
NG + RPIAVDWAV K+ + + + E +++ E
Sbjct: 167 SLNGTEIDGRPIAVDWAVSKDAFEATTLKDASSE--------------------EENKEF 206
Query: 337 ASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDK 396
SD+ +S ED ++++ +EEVD S+ L ++E+ S+
Sbjct: 207 VSDEGHSIVTEDASADSESEEEVD-----------------GHSEGKELAGESEEEGSN- 248
Query: 397 TVNESAKVSDVSKLNSSKSKPKSLKQTEGEDE-LQNTIFICNLPFDLDNEEVKQRFSAFG 455
V DV S S S+ ++E L++T+F+ NL F+ +E+ F FG
Sbjct: 249 -------VDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFG 301
Query: 456 EVVSFVPVLHQVTKRPKGTGFLKFK-------TVEAATAAVSASKTTS------------ 496
+ V T R G GF+KF+ +E A+ + T +
Sbjct: 302 PLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEMASQLPTQEPTEAEKRFLPSVLVDE 361
Query: 497 GLG-------IFLKGRQLTVLKALDKKLAHD---KEIDKSKNETN---DHRNLYLAKEGL 543
G+ L GR L V A+ +K A D K + + K + D R+L+L EG
Sbjct: 362 GIDTDSVSSRFLLHGRLLKVTSAVTRKEASDINQKSLQERKQKMGKGVDRRHLFLLNEGK 421
Query: 544 ILEGTPAAEGVSDDDMSKR-QMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKL 602
I P +S+ D + R Q + ++K ++P H+S RL I N+ + + K L L
Sbjct: 422 IAADHPLFNSLSETDKTLRSQSIAQRKKLLEKNPTLHLSLNRLSIRNISRHIDPKILAML 481
Query: 603 CIDAV------VSRASKQKPV-----------IKQIKFLQSLKKGKVDTKH----YSRGV 641
A+ VS+ + +K+ K LK+ KV+T+ S+G
Sbjct: 482 GRQAIRGFMDDVSKGLRANITEEEENLDKGHRLKRGKSGGVLKQAKVETEKAGAGRSKGF 541
Query: 642 AFVEFTEHQHALVALRVLNNNPKTFG---------------PE------------HRPIV 674
F++F H++AL+ALR LN T PE R IV
Sbjct: 542 GFMQFISHKYALMALRWLNGREITVKKIIDAEIEWARKHKIPEPQLPNIDYNDRPRRLIV 601
Query: 675 EFAVDNVQTLKQRNAKIQAQQQQ 697
EFA++N+Q +K+R K ++ +Q+
Sbjct: 602 EFAIENIQVVKRRQEKEKSFRQK 624
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L +RN+ F+ K +++ + FS VG + + + N +TG ++G+ FV F+ DA+ A ++
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 279 NGQKFGKRPIAVDWAVPK 296
+K R + +D+A P+
Sbjct: 67 KNKKLHGRILRLDFATPR 84
Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+VT + E+RG+G+V F+++EDA RA + + GR + + A R +RS+V
Sbjct: 36 VVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPR-----KRSEVD 90
Query: 61 QEVQAEDIEKTM--DNKDGVI 79
+ Q + ++KT+ DN+ +I
Sbjct: 91 TD-QNKAVKKTIRQDNRPRLI 110
>sp|P37838|NOP4_YEAST Nucleolar protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NOP4 PE=1 SV=1
Length = 685
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 162/353 (45%), Gaps = 82/353 (23%)
Query: 432 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTV----EAATA 487
++F+ N+P+D E + FS FG V +PV+ + T KGT F+ FK E
Sbjct: 291 SVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTYNECIKN 350
Query: 488 AVSASKTTSGLG------IFLKGRQLTVLKAL---------DKKLAHDKE-IDKSKNETN 531
A +A T+ +G +GR L++ L +K A KE + K+ E
Sbjct: 351 APAAGSTSLLIGDDVMPEYVYEGRVLSITPTLVREDAGRMAEKNAAKRKEALGKAPGE-K 409
Query: 532 DHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKL-QSPNFHVSRTRLVIYNL 590
D RNLYL EG ++EG+ A+ +++ DM R+ ++ ++ +L ++P+ H+S TRL I NL
Sbjct: 410 DRRNLYLLNEGRVVEGSKMADLLTNTDMEIREKSYKLRVEQLKKNPSLHLSMTRLAIRNL 469
Query: 591 PKSMTEKGLKKLCIDAVVS-------------------RASKQKP--------------- 616
P++M +K LK L AVV R++K+K
Sbjct: 470 PRAMNDKALKALARKAVVEFATEVKNKERHPLSKEEIIRSTKEKYKFMGPDEIEAQKKKD 529
Query: 617 ----VIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKT------- 665
V+KQ K + +K T SRG FVEF +H++AL+ LR LN + T
Sbjct: 530 KKSGVVKQAKVIMEVKGS---TAGRSRGYGFVEFRDHKNALMGLRWLNCHAVTSDEILEG 586
Query: 666 ------------FGPEHRPIVEFAVDNVQTLKQRNAKIQAQQQQNVESNTMDT 706
G R VEFA++N +K+R +++ + + + DT
Sbjct: 587 LNDDEKKQVDNDLGKGRRLCVEFAIENSNVVKRRREQLKQARTKRTRPDNEDT 639
Score = 37.4 bits (85), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L +R+IP ++ D FS + + + +T+ S+GF FV F + D + A+ K
Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKA 86
Query: 279 NGQKFGKRPIAVDWA 293
KF + VD A
Sbjct: 87 RKTKFNGHILRVDIA 101
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
+K + + + +RN+P+ A + FS G V + TGL+KG AFV F
Sbjct: 285 NKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAF 338
Score = 33.5 bits (75), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + RGFG+V FAV +D A+ T G + V A R RSK T
Sbjct: 56 VVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRD-----RSKKT 110
Query: 61 QEV 63
EV
Sbjct: 111 SEV 113
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Query: 112 EDCSQKQRVARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 170
EDC + + RT +I L +M EE+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 171 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V Y T K A +++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 288
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 289 AVDWAVPKN 297
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 112/301 (37%), Gaps = 41/301 (13%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + +DA RA+ NG + + I V +A R S E +
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA--RPSSEVIKDA-- 106
Query: 61 QEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRV 120
+ + +TM KD E S+ G+ + R L D Q +
Sbjct: 107 -NLYISGLPRTMTQKD-----VEDMFSRF---GRIINSRV-------LVD-----QTTGL 145
Query: 121 ARTVIIGGLLNADMAEEV------HRLAGSIGTVCSVTYPLPKEELEQHGLAQ---EGCK 171
+R V AEE H+ GS + P + L+Q +
Sbjct: 146 SRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPAR 205
Query: 172 MDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVN 231
V + + + + + H I G V G+ + W + I N+ A
Sbjct: 206 RFGGPVHHQAQRFRFSPMGVDHMSGISGVNV-------PGNASSGWCIFIYNLGQDADEG 258
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291
+ MF P G V NV + + +T KGF FV T +A AI NG + G + + V
Sbjct: 259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318
Query: 292 W 292
+
Sbjct: 319 F 319
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 427 DELQNTIFICN-LPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAA 485
D++ T I N LP ++ EE++ FS+ GEV S + +V G GF+ + T + A
Sbjct: 15 DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 486 TAAVSASKTTSGL 498
A+S T +GL
Sbjct: 75 ERAIS---TLNGL 84
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 407 VSKLNSSKSKPKSLKQTEGEDELQ----NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVP 462
+S LN + + K++K + + ++I LP + ++V+ FS FG +++
Sbjct: 78 ISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRV 137
Query: 463 VLHQVTKRPKGTGFLKFKTVEAATAAVSA 491
++ Q T +G F++F A A+++
Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 14/189 (7%)
Query: 112 EDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 170
EDC + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 171 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 288
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 289 AVDWAVPKN 297
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
G+ + W + I N+ A + MF P G V NV + + +T KGF FV T +
Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297
Query: 271 AESAIQKFNGQKFGKRPIAVDW 292
A AI NG + G + + V +
Sbjct: 298 AAMAIASLNGYRLGDKILQVSF 319
Score = 33.9 bits (76), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 433 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 491
++I LP + ++V+ FS FG +++ ++ Q T +G F++F A A+++
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQ 276
K+++RNIPF+A EI+++FS G + V +P T TG +GF FV F K+DA+ A
Sbjct: 833 KILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFN 892
Query: 277 KF--NGQKFGKRPIAVDWA 293
+ +G+R + ++WA
Sbjct: 893 ALCHSTHLYGRR-LVLEWA 910
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 150/370 (40%), Gaps = 62/370 (16%)
Query: 206 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
Q E SKT ++++N+P ++++ F G + V +P T A V+F
Sbjct: 579 QAAAERSKTV---ILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGIT------AIVEF 629
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGV---QNKGDGNSD 322
+A A + KF P+ ++WA P ++SS +D K +
Sbjct: 630 LEPLEARKAFRHLAYSKFHHVPLYLEWA-PVGVFSSTAPQKKKLQDTPSEPMEKDPAEPE 688
Query: 323 SGSDDDLGDDDAETASDDSNSSEK------------EDLPS------NADFDEEVDIARK 364
+ D + +D+ T NSS K E LP N +FD + ++
Sbjct: 689 TVPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKE 748
Query: 365 VLNKLTSTTGSLPS---------LSDDSALVKGNKEQDSDKTVNE-SAKVSDVSKL---- 410
V +K+ + S LS V+ K + + K + + V D KL
Sbjct: 749 VFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRI 808
Query: 411 NSSKSKPK---SLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQ 466
+ +KP + K+ + + I + N+PF + E+++ FS FGE+ + +P
Sbjct: 809 SERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMT 868
Query: 467 VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV--------LKALDKKL- 517
T +G GF+ F T + A A +A ++ L GR+L + L+AL +K
Sbjct: 869 GTGTHRGFGFVDFLTKQDAKRAFNALCHST----HLYGRRLVLEWADSEVTLQALRRKTA 924
Query: 518 AHDKEIDKSK 527
AH E K K
Sbjct: 925 AHFHEPPKKK 934
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L +RN+P+ + +++ +FS G + ++ P ++ T KGFAF+ F A A +
Sbjct: 403 RLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAGA 308
+GQ F R + V + K S +A G+
Sbjct: 463 VDGQVFQGRMLHVLPSTIKKEASEDASALGS 493
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 433 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 492
+F+ NLP+ E++++ FS +G + + +TK+PKG F+ F E A A S
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 493 KTTSGLGIFLKGRQLTVLKALDKKLAHD 520
G +GR L VL + KK A +
Sbjct: 464 D-----GQVFQGRMLHVLPSTIKKEASE 486
Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 6 GSNEHRGFGYVQFAVMEDANRAVE-MKNGTSVGGRKIGVKHAMHRASLEQRRSKV 59
G+ HRGFG+V F +DA RA + + T + GR++ ++ A +L+ R K
Sbjct: 869 GTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEVTLQALRRKT 923
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQ 276
K+++RNIPF+A EI+++FS G + V +P T TG +GF FV F K+DA+ A
Sbjct: 825 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 884
Query: 277 KF--NGQKFGKRPIAVDWA 293
+ +G+R + ++WA
Sbjct: 885 ALCHSTHLYGRR-LVLEWA 902
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 418 KSLKQTEGEDELQNT--IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTG 475
++L + E E++L ++ +F+ NL + E++++ FSA+G + + +TK+PKG
Sbjct: 385 RTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFA 444
Query: 476 FLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 518
F+ F E A A + G +GR L VL + KK A
Sbjct: 445 FVTFMFPEHAVKAYAEVD-----GQVFQGRMLHVLPSTIKKEA 482
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 198 KGGTVWARQLGGEGSKTQKW----KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD 253
K T W + GE + + +L +RN+ + + +++ +FS G + ++ P ++
Sbjct: 377 KSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL 436
Query: 254 TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNI 298
T KGFAFV F A A + +GQ F R + V +P I
Sbjct: 437 TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV---LPSTI 478
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 137/344 (39%), Gaps = 60/344 (17%)
Query: 206 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
Q E SKT ++ +N+P EI++ FS G + V +P T A V+F
Sbjct: 576 QAAAERSKTV---ILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGIT------AIVEF 626
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGS 325
+A A + KF P+ ++WA P ++ + + + K + ++
Sbjct: 627 LEPLEARKAFRHLAYSKFHHVPLYLEWA-PIGVFGAAPQKKDSQHEQPAEKAEVEQETVL 685
Query: 326 DDDLGDDDAETASDDSN----------SSEKEDLPSNADFDEEVDIA--RKVLNKLTSTT 373
D + E A + E+E +P F + ++ + + L + S
Sbjct: 686 DPEGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKV 745
Query: 374 GSLPS-------------LSDDSALVKGNKEQDSDKTVNE-----------SAKVSDVS- 408
G++ S LS V+ K + + K + + ++S+ +
Sbjct: 746 GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERAT 805
Query: 409 --KLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLH 465
L S++ K KQT + I + N+PF + E+++ FS FGE+ + +P
Sbjct: 806 KPALTSTRKKQVPKKQT------TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKM 859
Query: 466 QVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 509
T +G GF+ F T + A A +A ++ L GR+L +
Sbjct: 860 TGTGAHRGFGFVDFITKQDAKKAFNALCHST----HLYGRRLVL 899
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 6 GSNEHRGFGYVQFAVMEDANRAVE-MKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQ 64
G+ HRGFG+V F +DA +A + + T + GR++ ++ A +++ R K + Q
Sbjct: 861 GTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQTLRRKTARHFQ 920
Query: 65 AEDIEKTMDNKDGVISGAE 83
+K DG++ E
Sbjct: 921 EPPKKKRSAVLDGILEQLE 939
Score = 33.5 bits (75), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+LI++N+P K + +F+ G + + + D G + F F+ F + +A++A+
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAALNH 61
Query: 278 FN 279
F+
Sbjct: 62 FH 63
>sp|Q19706|EIF3G_CAEEL Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis elegans GN=eif-3.G PE=3 SV=1
Length = 256
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 221 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280
+ N+P + +E++D+F +G V ++I + TGL KGFAFV F + DA AI + N
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 281 QKFGKRPIAVDWAVPKN 297
+ + V+W P N
Sbjct: 240 IRMYHMVLKVEWTRPSN 256
Score = 40.4 bits (93), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 430 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV 489
+NT + NLP +++ +E++ F G V+ +VT PKG F+ F++ + A A+
Sbjct: 175 ENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAI 234
Query: 490 S 490
+
Sbjct: 235 A 235
>sp|A8WLV5|EIF3G_CAEBR Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis briggsae GN=eif-3.G.1 PE=3 SV=2
Length = 261
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 221 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280
+ N+P + +E++D+F +G V ++I + TGL KGFAFV F + DA AI + N
Sbjct: 185 VTNLPQEMNEDELRDVFGRIGRVIRIFIARDKITGLPKGFAFVTFESRDDAARAIAELND 244
Query: 281 QKFGKRPIAVDWAVPKN 297
+ + V+W P N
Sbjct: 245 IRMYHMVLKVEWTRPSN 261
Score = 40.0 bits (92), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 421 KQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFK 480
+Q E +NT + NLP +++ +E++ F G V+ ++T PKG F+ F+
Sbjct: 171 RQMERNRSDENTCRVTNLPQEMNEDELRDVFGRIGRVIRIFIARDKITGLPKGFAFVTFE 230
Query: 481 TVEAATAAVS 490
+ + A A++
Sbjct: 231 SRDDAARAIA 240
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 12/191 (6%)
Query: 110 DKEDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQE 168
D D + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 7 DHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY- 63
Query: 169 GCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKA 228
V Y K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ------GFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTM 117
Query: 229 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKR 286
+++DMF P G + N + + TGLS+G AF++F + +AE AI FNG K
Sbjct: 118 TQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSE 177
Query: 287 PIAVDWAVPKN 297
PI V +A N
Sbjct: 178 PITVKFAANPN 188
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 112/306 (36%), Gaps = 43/306 (14%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + +DA RA+ NG + + I V A R S E +
Sbjct: 51 LIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVA--RPSSESIKDA-- 106
Query: 61 QEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRV 120
+ + +TM KD L G+ + R L D Q +
Sbjct: 107 -NLYISGLPRTMTQKD--------VEDMFLPFGRIINSRV-------LVD-----QATGL 145
Query: 121 ARTVIIGGLLNADMAEEV------HRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDA 174
+R V AEE H+ GS + +V + + + L + C A
Sbjct: 146 SRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPI-TVKFAANPNQNKNMALLSQLCHSPA 204
Query: 175 ----SAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V + + + + + H I G V S + W + I N+ A
Sbjct: 205 RRFGGPVHHQAQRFRFSPMGVDHMSSISGVNV-------ASSASSGWCIFIYNLGQDADE 257
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290
+ MF P G V NV + + +T KGF FV T +A AI NG + G + + V
Sbjct: 258 GILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQV 317
Query: 291 DWAVPK 296
+ K
Sbjct: 318 FFKTSK 323
>sp|Q5U259|ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-b PE=1 SV=1
Length = 326
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 12/191 (6%)
Query: 110 DKEDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQE 168
D D + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 7 DHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY- 63
Query: 169 GCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKA 228
V Y K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ------GFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTM 117
Query: 229 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKR 286
+++DMF P G + N + + TGLS+G AF++F + +AE AI FNG K
Sbjct: 118 TQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSE 177
Query: 287 PIAVDWAVPKN 297
PI V +A N
Sbjct: 178 PITVKFAANPN 188
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + I N+ A + MF P G V NV + + +T KGF FV T +A AI
Sbjct: 244 WCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIA 303
Query: 277 KFNGQKFGKRPIAVDWAVPKN 297
NG + G + + V + K+
Sbjct: 304 SLNGYRLGDKTLQVSFKTSKS 324
>sp|B5DGI7|RBM8A_SALSA RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1
Length = 175
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
+ W L + + +A +I D F+ G + N+++ + TG KG+A V++ ++A++
Sbjct: 70 VEGWILFVTGVHEEATEEDIHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQA 129
Query: 274 AIQKFNGQKFGKRPIAVDWAV 294
A++ NGQ +PI+VDW
Sbjct: 130 AMEGLNGQDMMGQPISVDWGF 150
>sp|Q1JQ73|ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1
Length = 337
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 7/194 (3%)
Query: 110 DKEDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKE---ELEQHGL 165
D D + + RT +I L +M + E+ L SIG V S K E+ L
Sbjct: 7 DHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSL 66
Query: 166 AQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIP 225
++ G + V Y K A ++ L+ ++ T+ + L I +P
Sbjct: 67 SK-GHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGLP 125
Query: 226 FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--F 283
+++DMF P G + N + + TGLS+G AF++F + +AE AI FNG K
Sbjct: 126 RTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPG 185
Query: 284 GKRPIAVDWAVPKN 297
PI V +A N
Sbjct: 186 SSEPITVKFAANPN 199
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S T W + + N+ A + MF P G V NV + + +T KGF FV T +A
Sbjct: 250 SATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 309
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPKN 297
AI NG + G + + V + K+
Sbjct: 310 AMAIASLNGYRLGDKTLQVSFKTSKS 335
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 279 NGQKFGKRPIAVDWA 293
NG++F R + VD A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 432 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV 489
++F+ N+P++ E++K FS G VVSF V + T +PKG GF +++ E A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 279 NGQKFGKRPIAVDWA 293
NG++F R + VD A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 432 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV 489
++F+ N+P++ E++K FS G VVSF V + T +PKG GF +++ E A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 279 NGQKFGKRPIAVDWA 293
NG++F R + VD A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 432 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV 489
++F+ N+P++ E++K FS G VVSF V + T +PKG GF +++ E A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 279 NGQKFGKRPIAVDWA 293
NG++F R + VD A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 20/127 (15%)
Query: 432 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 491
++F+ N+P++ E++K FS G VVSF V + T +PKG GF +++ E A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR- 75
Query: 492 SKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAA 551
L GR+ + +AL +D + +E N L ++E +P
Sbjct: 76 ---------NLNGREFSG-RAL--------RVDNAASEKNKEELKSLGTGAPVIE-SPYG 116
Query: 552 EGVSDDD 558
E +S +D
Sbjct: 117 ESISPED 123
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF35 PE=3 SV=1
Length = 294
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ +A ++++ MF G++ VY+ + DTG +GFAFV +T K A++A++
Sbjct: 216 LRVTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTLKSHAQAALEAM 275
Query: 279 NGQKFGKRPIAVDWAVPKN 297
+G F + VD++ +N
Sbjct: 276 DGHGFDNLIMKVDYSKKRN 294
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 279 NGQKFGKRPIAVDWA 293
NG++F R + VD A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 432 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV 489
++F+ N+P++ E++K FS G VVSF V + T +PKG GF +++ E A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 279 NGQKFGKRPIAVDWA 293
NG++F R + VD A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 432 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV 489
++F+ N+P++ E++K FS G VVSF V + T +PKG GF +++ E A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN---TDTGL--SKGFAFVK 264
EG KT+ K++++N+PF+A +++++FS G + ++ +P T TG ++GFAF++
Sbjct: 633 EGGKTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLE 692
Query: 265 FTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
FT +A A++ R + + WA
Sbjct: 693 FTTHTEAARAMEALKHTHLLGRHLVLQWA 721
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 433 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 492
+F+ NL F +E + FS +G + + Q T P GT FL+F E A AA A
Sbjct: 223 LFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKAL 282
Query: 493 KTTSGLGIFLKGRQLTVL 510
T IF +GR L VL
Sbjct: 283 DKT----IF-QGRLLHVL 295
Score = 40.0 bits (92), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 109/265 (41%), Gaps = 28/265 (10%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L +RN+ F + FS G + ++P + TG G AF++F DA +A +
Sbjct: 222 RLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKA 281
Query: 278 FNGQKFGKRPIAVDWAVP-KNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAET 336
+ F R + V +P + GAAAG+ V K G D G + DA+
Sbjct: 282 LDKTIFQGRLLHV---LPGRAKPGQEGAAAGS--GVVDGKVLGKRDEGRGEVKSKVDAKR 336
Query: 337 ASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDK 396
+ + L N+D +A V +++ + L + ++ VK + +
Sbjct: 337 KQESAKGVNWASLYMNSD-----AVAASVADRMGISKSELLNADSGNSAVKLALAETT-- 389
Query: 397 TVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 456
+ E+ K + + + +P+ + Q TI + N+P+ + + F+ G+
Sbjct: 390 VIEETKKYFEEAGIVLESLQPRVPRS-------QTTILVKNIPYGTSIQSLTDLFAPHGK 442
Query: 457 VVSFVPVLHQVTKRPKGT-GFLKFK 480
L +V P GT G ++F+
Sbjct: 443 -------LTRVLLPPAGTLGVVEFE 460
Score = 37.7 bits (86), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 433 IFICNLPFDLDNEEVKQRFSAFGEVVSF------VPVLHQVTKRPKGTGFLKFKTVEAAT 486
+ + NLPF+ ++V++ FSA+G++ S VP + +G FL+F T A
Sbjct: 642 VLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPT-STGAQSTRGFAFLEFTTHTEAA 700
Query: 487 AAVSASKTTSGLG 499
A+ A K T LG
Sbjct: 701 RAMEALKHTHLLG 713
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN---TDTGL--SKGFAFVK 264
EG KT+ K++++N+PF+A +++++FS G + ++ +P T TG ++GFAF++
Sbjct: 633 EGGKTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLE 692
Query: 265 FTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
FT +A A++ R + + WA
Sbjct: 693 FTTHTEAARAMEALKHTHLLGRHLVLQWA 721
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 433 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 492
+F+ NL F +E + FS +G + + Q T P GT FL+F E A AA A
Sbjct: 223 LFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKAL 282
Query: 493 KTTSGLGIFLKGRQLTVL 510
T IF +GR L VL
Sbjct: 283 DKT----IF-QGRLLHVL 295
Score = 40.0 bits (92), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 109/265 (41%), Gaps = 28/265 (10%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L +RN+ F + FS G + ++P + TG G AF++F DA +A +
Sbjct: 222 RLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKA 281
Query: 278 FNGQKFGKRPIAVDWAVP-KNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAET 336
+ F R + V +P + GAAAG+ V K G D G + DA+
Sbjct: 282 LDKTIFQGRLLHV---LPGRAKPGQEGAAAGS--GVVDGKVLGKRDEGRGEVKSKVDAKR 336
Query: 337 ASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDK 396
+ + L N+D +A V +++ + L + ++ VK + +
Sbjct: 337 KQESAKGVNWASLYMNSD-----AVAASVADRMGISKSELLNADSGNSAVKLALAETT-- 389
Query: 397 TVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 456
+ E+ K + + + +P+ + Q TI + N+P+ + + F+ G+
Sbjct: 390 VIEETKKYFEEAGIVLESLQPRVPRS-------QTTILVKNIPYGTSIQSLTDLFAPHGK 442
Query: 457 VVSFVPVLHQVTKRPKGT-GFLKFK 480
L +V P GT G ++F+
Sbjct: 443 -------LTRVLLPPAGTLGVVEFE 460
Score = 37.7 bits (86), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 433 IFICNLPFDLDNEEVKQRFSAFGEVVSF------VPVLHQVTKRPKGTGFLKFKTVEAAT 486
+ + NLPF+ ++V++ FSA+G++ S VP + +G FL+F T A
Sbjct: 642 VLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPT-STGAQSTRGFAFLEFTTHTEAA 700
Query: 487 AAVSASKTTSGLG 499
A+ A K T LG
Sbjct: 701 RAMEALKHTHLLG 713
>sp|A6SGN8|EIF3G_BOTFB Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia
fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1
Length = 288
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 199 GGTVWARQLGG-EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLS 257
GGT ++GG + + L + N+ A+ E++DMF G V V++ + +TGL+
Sbjct: 189 GGTAGGERMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLA 248
Query: 258 KGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
KGFAF+ F + DA A +K +G F + V++A
Sbjct: 249 KGFAFISFQERSDAAKACEKMDGYGFKHLILRVEFA 284
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L IRN+PF A +EI F G V V+IP + T SKG AFV F+ A +A +
Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSGGA 304
+G F R + + AV K+ + G+
Sbjct: 375 KDGSTFQGRLLHLLPAVNKDALAETGS 401
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
K++I+N+PF+A +I+D+FS G + +V +P D ++GF FV+++ R+A+SA++
Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDN-TTRGFGFVEYSTVREAQSAMEA 778
Query: 278 FNGQKFGKRPIAVDWA 293
R + + W+
Sbjct: 779 LKHTHLLGRHLVLQWS 794
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 433 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 492
+FI NLPF +E+ F +FG V L + TK KG F+ F A AA A
Sbjct: 316 LFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAK 375
Query: 493 KTTSGLGIFLKGRQLTVLKALDK 515
G +GR L +L A++K
Sbjct: 376 D-----GSTFQGRLLHLLPAVNK 393
Score = 40.0 bits (92), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 433 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 492
I I NLPF+ +++ FS+ G++ S V + + +G GF+++ TV A +A+ A
Sbjct: 721 ILIKNLPFEATKRDIRDLFSSQGQLKS-VRLPKKFDNTTRGFGFVEYSTVREAQSAMEAL 779
Query: 493 KTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDH 533
K T L GR L VL+ + +++D +++T H
Sbjct: 780 KHTH-----LLGRHL-VLQWSHLASSTQQQVDMQRSKTKQH 814
Score = 34.3 bits (77), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
+ KK N RGFG+V+++ + +A A+E T + GR + ++ + H AS Q++ + +
Sbjct: 750 LPKKFDNTTRGFGFVEYSTVREAQSAMEALKHTHLLGRHLVLQWS-HLASSTQQQVDMQR 808
Query: 62 EVQAEDIEKTMDN 74
+ T DN
Sbjct: 809 SKTKQHFVNTHDN 821
>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1
SV=1
Length = 887
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Query: 172 MDASAVLYTTVKSACASVALL-------HQKEIKGGTVWARQLGGEGSKTQK--WKLIIR 222
M V + T + A A +A + H+ ++K A Q G +K+ K K+I++
Sbjct: 709 MGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGKIIVK 768
Query: 223 NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282
N+PF+A ++ ++F+ G + +V +P D ++GFAFV+F ++AE+A+ + +G
Sbjct: 769 NLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQLHGVH 827
Query: 283 FGKRPIAVDW 292
R + + +
Sbjct: 828 LLGRRLVMQY 837
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274
Q +L +RNI + +K + + +FSP G + V++ +T TG SKGFA+V F ++A +A
Sbjct: 343 QTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNA 402
Query: 275 IQKFNGQKFGKRPIAV 290
+ + Q F R + +
Sbjct: 403 YVELDKQIFQGRLLHI 418
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 432 TIFICNLPFDLDNEEVKQRFSAF-GEVVSFVPVL----HQVTKRPKGTGFLKFKTVEAAT 486
+IFI NL F N+ + RF F G VV+ V HQ G GF++F+T E A
Sbjct: 664 SIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQAN 723
Query: 487 AAVSA 491
A ++A
Sbjct: 724 AVIAA 728
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 140/326 (42%), Gaps = 59/326 (18%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
++++N PF E+ +MF P G + + +P + A V+F A +A K
Sbjct: 534 ILVKNFPFGTTREELGEMFLPYGKLERLLMPP------AGTIAIVQFRDTTSARAAFTKL 587
Query: 279 NGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSG-----SDDDLGDDD 333
+ ++F I ++ PK+ ++ A +D + N ++ S +DL + +
Sbjct: 588 SYKRFKDGIIYLERG-PKDCFTKPAEA----DDLINNTSAKEEENPVEVKPSSNDLMEAN 642
Query: 334 AETASDDSNSSEKE--DLPSNADFDEEVDIA---RKVLNKLTSTTGSL------------ 376
+ SN+ +++ D P+ + F + ++ + + + ++ TG +
Sbjct: 643 KDVTEGSSNAHDEDVIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKH 702
Query: 377 --PSLSDDSALVKG-NKEQDS------DKTVNESAKV----SDVSKLNSSKSKPKSLKQT 423
+LS V+ KEQ + D TV + K+ S S +K KS K++
Sbjct: 703 QGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKS 762
Query: 424 EGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVE 483
I + NLPF+ ++V + F++FG++ S V V + K +G F++F +
Sbjct: 763 -------GKIIVKNLPFEATRKDVFELFNSFGQLKS-VRVPKKFDKSARGFAFVEFLLPK 814
Query: 484 AATAAVSASKTTSGLGIFLKGRQLTV 509
A A+ G+ L GR+L +
Sbjct: 815 EAENAMDQLH-----GVHLLGRRLVM 835
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRAS 51
GFG+V+F E AN + +GT + G KI +K + +AS
Sbjct: 710 GFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQAS 749
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291
+IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 292 WAV-----PKNIYSS 301
WA PK+ Y S
Sbjct: 181 WATRKPPAPKSTYES 195
Score = 33.5 bits (75), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 433 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 492
+F+ +L ++ E++K F+ FG + V T + KG GF+ F A A+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 493 KTTSGLGIFLKGRQL-------------TVLKALDKKLAHDKEIDKS 526
G +L GRQ+ + ++ K+L++D+ +++S
Sbjct: 168 G-----GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQS 209
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 208 GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267
GG+ +K K+II+N+PF++ + EI+ +F+ G + +V IP + G +GF FV+F
Sbjct: 787 GGQPNKPSS-KIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGG-HRGFGFVEFLT 844
Query: 268 KRDAESAIQKFNGQKFGKRPIAVDWA 293
+ +A++A++ F R + + +A
Sbjct: 845 EEEAKNAMEALGNSHFYGRHLVLQYA 870
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 97/246 (39%), Gaps = 26/246 (10%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
++ +RN+ + K +++ +FS G + ++IP + D+ SKG AF+ + +A A+
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALND 421
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETA 337
+G+ F R I V +P G AA A + + N G + +
Sbjct: 422 MDGKVFQGRLIHV---LP-------GKAAPAKQFSENKDNNNNGAEGGSSSFKAEKEQKQ 471
Query: 338 SDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL--PSLSDDSALVKGNKEQDSD 395
S S+ NA F I + + T G L P+ D + +
Sbjct: 472 KTTSGSTHN----WNALFMRSDAIVSSLAERYKMTQGQLLDPNQMDLAVRM--------- 518
Query: 396 KTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 455
T+ E+ +++ K + +G + + N+PF E+ + FS FG
Sbjct: 519 -TLMETHVINETKKFLEDQGVIIQDIGNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFG 577
Query: 456 EVVSFV 461
E+ V
Sbjct: 578 ELSRVV 583
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 202 VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFA 261
V + +G +GSK L+++NIPFK + +E+ ++FS G + V + ++ A
Sbjct: 538 VIIQDIGNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVL------SPARTIA 591
Query: 262 FVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIY 299
+++ +A+ + KF P+ ++WA P+ ++
Sbjct: 592 LIEYIHPNEAKVGFKNLAYSKFHHVPLYLEWA-PEGVF 628
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 24/136 (17%)
Query: 405 SDVSKLNSSKSKPKSLKQTEGEDELQ-----NTIFICNLPFDLDNEEVKQRFSAFGEVVS 459
++V ++N + P++ KQ+ + Q + I I NLPF+ +E+++ F+A+GE+ S
Sbjct: 764 TNVQEINKRRELPENSKQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQS 823
Query: 460 FVPVLHQVTKRP----KGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 515
++ K+P +G GF++F T E A A+ A + GR L + A
Sbjct: 824 V-----RIPKKPNGGHRGFGFVEFLTEEEAKNAMEALGNSH-----FYGRHLVLQYA--- 870
Query: 516 KLAHDKEIDKSKNETN 531
DK ID+ + + N
Sbjct: 871 --EQDKNIDELREKAN 884
Score = 40.0 bits (92), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSK 58
+ KK + HRGFG+V+F E+A A+E + GR + +++A ++++ R K
Sbjct: 826 IPKKPNGGHRGFGFVEFLTEEEAKNAMEALGNSHFYGRHLVLQYAEQDKNIDELREK 882
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 433 IFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 491
IF+ NL + E++++ FS FG++ +P+ + +K+ KG F+ + E A A++
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYD-SKKSKGIAFILYLIPENAVQALND 421
Query: 492 SKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETND 532
G +GR + VL K A K+ ++K+ N+
Sbjct: 422 MD-----GKVFQGRLIHVLPG---KAAPAKQFSENKDNNNN 454
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 115/275 (41%), Gaps = 41/275 (14%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L IRNI ++A + + +FS G + V+I +T TG SKGF +V+F K DA A +
Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETA 337
+ Q F R + + +P + K D D +L
Sbjct: 371 LDKQIFQGRLLHI---LPAD-----------------KKKDHRLDEFDLKNLPLKKQREL 410
Query: 338 SDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKT 397
+ ++ K N+ + + V +KL T L + S+ VK +
Sbjct: 411 KKKAQAA-KTQFSWNSLYMNSDAVLESVASKLGVTKSQLIDPENSSSAVK--------QA 461
Query: 398 VNESAKVSDVSKLNSSKS-KPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 456
+ E+ + DV K + S + E +D++ I + N PF +E+ + FSA+G+
Sbjct: 462 LAEAHVIGDVRKYFEDRGVDLTSFDKKERDDKI---ILVKNFPFGTTIDEIGELFSAYGQ 518
Query: 457 VVSFVPVLHQVTKRPKGT-GFLKFKTVEAATAAVS 490
L ++ P GT ++F+ +A AA S
Sbjct: 519 -------LKRMLMPPAGTIAIIEFRDAPSARAAFS 546
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 223 NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282
N+PF+A ++ ++F G + +V +P D ++GFAFV+F ++AE+A+ + G
Sbjct: 723 NLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAETAMSQLEGVH 781
Query: 283 FGKRPIAVDWA 293
R + + +A
Sbjct: 782 LLGRRLVMQYA 792
Score = 40.0 bits (92), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 219 LIIRNIPFKAKVNEIKDMFSP-----VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
+ ++N+ F V + D+F P V V P N+ LS GF FV+F K A
Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANV 678
Query: 274 AIQKFNGQ 281
AI +G
Sbjct: 679 AISTLDGH 686
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMH-----RASLEQRR 56
V KK RGF +V+F +M++A A+ G + GR++ +++A +E+
Sbjct: 748 VPKKFDQSARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDPENAEVEIERMT 807
Query: 57 SKVTQEVQAEDI 68
KV ++V +++
Sbjct: 808 KKVKKQVATQNL 819
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 140/330 (42%), Gaps = 52/330 (15%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + ++P + + D FS G V ++ + + T S G+A+V F DAE A+
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 279 NGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETAS 338
N +PI + W+ + ++ G GN + D D+ A
Sbjct: 64 NFDLVRNKPIRIMWS--------------QRDPSLRRSGVGNVFIKNLDRAIDNKAIY-- 107
Query: 339 DDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTV 398
D+ S+ L DE+ + S V E+ ++ ++
Sbjct: 108 -DTFSAFGNILSCKVATDEKGN-------------------SKGYGFVHFETEEAANTSI 147
Query: 399 NE-SAKVSDVSKLNSSKSKPKSLKQTE-GED-ELQNTIFICNLPFDLDNEEVKQRFSAFG 455
++ + + + K+ K P+ ++ E GE +L +++ N D D+E++K+ F +G
Sbjct: 148 DKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYG 207
Query: 456 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 515
++ S+ V+ + + KG GF+ F+T EAA AAV A +G +G+ L V +A K
Sbjct: 208 KITSY-KVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKD-MG---EGKSLYVARA-QK 261
Query: 516 KLAHDKEIDKSKNETNDHR-------NLYL 538
K +E+ + E R NLY+
Sbjct: 262 KAERQQELKRKFEELKQKRHESVFGVNLYV 291
Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 20/136 (14%)
Query: 177 VLYTTVKSACASVALLHQKEI-KGGTVWARQLGGEGSKTQKWK----------------- 218
V + T ++A A+V L+ K++ +G +++ + + + Q+ K
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGV 287
Query: 219 -LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
L ++N+ + ++ FSP G + + + + G SKGF FV F +A A+ +
Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKV-MTDEEGRSKGFGFVCFNAASEATCAVTE 346
Query: 278 FNGQKFGKRPIAVDWA 293
NG+ G +P+ V A
Sbjct: 347 LNGRVVGSKPLYVALA 362
>sp|Q0U6E7|EIF3G_PHANO Eukaryotic translation initiation factor 3 subunit G
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=TIF35 PE=3 SV=2
Length = 281
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 206 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
++GG+ + L + N+ A+ +++DMFS G V V++ + +TG +KGFAFV +
Sbjct: 191 KMGGKFDRDDSATLRVTNVSEFAEEQDLRDMFSRYGHVTRVFLAKDRETGRAKGFAFVSY 250
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWA 293
+ DA A +K +G FG + V++A
Sbjct: 251 ADRTDAAKACEKMDGFGFGHLILRVEFA 278
>sp|Q4P7G1|EIF3G_USTMA Eukaryotic translation initiation factor 3 subunit G OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=TIF35 PE=3 SV=1
Length = 308
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 206 QLGGEG--SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 263
++GG G S+ L + N+ A ++++++F G V VY+ + +TG+ KG+AFV
Sbjct: 212 KMGGLGGMSRDDLPTLRVTNLSEDADDDDLRELFMRFGRVVRVYVGRDRETGICKGYAFV 271
Query: 264 KFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
F + DA+ A QK +G+ + ++ W++P+
Sbjct: 272 SFENREDADRARQKVDGRGYDNLILSCQWSLPR 304
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291
+IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 292 WAV-----PKNIYSS 301
WA PK+ Y S
Sbjct: 181 WATRKPPAPKSTYES 195
>sp|A7EWN6|EIF3G_SCLS1 Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35
PE=3 SV=1
Length = 288
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 205 RQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVK 264
R GG+ + L + N+ A+ E++DMF G V V++ + +TGL+KGFAF+
Sbjct: 196 RMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFIS 255
Query: 265 FTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
F + DA A +K +G F + V++A
Sbjct: 256 FQERSDAAKACEKMDGYGFKHLILRVEFA 284
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 279 NGQKFGKRPIAVDWA 293
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 414 KSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKG 473
K +P+S EG + L N +F+ + + +E++Q FS FG V + VTK +G
Sbjct: 86 KKEPQSAP--EGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRG 143
Query: 474 TGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 512
GFL F TVE AT+A+ + GR L V KA
Sbjct: 144 FGFLSFSTVEEATSAIDNLNSQE-----FYGRVLNVQKA 177
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 206 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
Q EGS+ L + I + + +E++ +FS G V +V I T S+GF F+ F
Sbjct: 90 QSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWA 293
+ +A SAI N Q+F R + V A
Sbjct: 150 STVEEATSAIDNLNSQEFYGRVLNVQKA 177
>sp|A8NS61|EIF3G_BRUMA Eukaryotic translation initiation factor 3 subunit G OS=Brugia
malayi GN=Bm1_08615 PE=3 SV=1
Length = 287
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 208 GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267
GG ++++ + N+P + E++ +F VG V V+I + T KGFAFV F
Sbjct: 199 GGAERRSEENTCRVTNLPEECDEMELRALFGTVGTVNRVFIAKDKHTNKPKGFAFVTFEH 258
Query: 268 KRDAESAIQKFNGQKFGKRPIAVDW 292
+ E+AIQK NG K + V+W
Sbjct: 259 RSQTEAAIQKLNGYKLDHLVLKVEW 283
Score = 33.1 bits (74), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 430 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV 489
+NT + NLP + D E++ F G V + T +PKG F+ F+ AA+
Sbjct: 207 ENTCRVTNLPEECDEMELRALFGTVGTVNRVFIAKDKHTNKPKGFAFVTFEHRSQTEAAI 266
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+P+ + D+F+ +G V I + TG SKGF V+F + DA S+I+K
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 370
Query: 279 NGQKFGKRPIAVDWA 293
NG ++G RP+ + +A
Sbjct: 371 NGYRYGGRPLQLSYA 385
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G+ Q+ ++ + N+ ++ + E+K+ VG V N I N GLSKG A ++++
Sbjct: 69 GQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEI-LNLPNGLSKGCAIIEYSTA 127
Query: 269 RDAESAIQKFNGQKFGKRPIAV 290
+A +AI+ + QKF R + +
Sbjct: 128 EEARTAIKTLSNQKFMGRLVYI 149
Score = 40.8 bits (94), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 122 RTVIIGGLLNADMAEEVHRLAGSIGTV--CSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
R V +G L E+ G +G V C + LP +GL++ GC + + Y
Sbjct: 77 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILN-LP------NGLSK-GCAI----IEY 124
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQ------------------LGGEGSKTQKWKLII 221
+T + A ++ L ++ G V+ R+ G+ S+ + +L +
Sbjct: 125 STAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDR-QLFV 183
Query: 222 RNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ 281
N+P+ + ++KD+F G V I N + G S+G V + ++A AIQ +
Sbjct: 184 GNLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQMLHNT 242
Query: 282 KFGKRPIAV 290
F R + V
Sbjct: 243 DFMGRTLEV 251
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 279 NGQKFGKRPIAVDWA 293
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
>sp|Q9V535|RBM8A_DROME RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu PE=1 SV=1
Length = 165
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W L + +I +A+ +EI++ F G + N+++ + TG SKG+A V++ + A +A +
Sbjct: 73 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 132
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + + I VDW K
Sbjct: 133 ALNGAEIMGQTIQVDWCFVK 152
>sp|A4RHN3|EIF3G_MAGO7 Eukaryotic translation initiation factor 3 subunit G OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=TIF35 PE=3 SV=1
Length = 303
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ A+ E++DMF G V V++ + DTGL+KGFAF+ F + DA A K
Sbjct: 225 LRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKACNKM 284
Query: 279 NGQKFGKRPIAVDWA 293
+G F + V++A
Sbjct: 285 DGWGFKHLILRVEFA 299
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ F A + I ++F+ G V +V IP + +T KGF +V+F+ DA+ A+
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328
Query: 279 NGQKFGKRPIAVDWAVPK 296
G+ RP+ +D++ P+
Sbjct: 329 QGEYIDNRPVRLDFSSPR 346
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 428 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATA 487
E +T+F+ NL F+ D + + + F+ GEVVS H T++PKG G+++F +E A
Sbjct: 264 EPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKK 323
Query: 488 AVSA 491
A+ A
Sbjct: 324 ALDA 327
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 421 KQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFK 480
KQ E E TIF+ L + +D+E +K+ F G V+ + + T R +G G++ F+
Sbjct: 158 KQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFE 217
Query: 481 TVEAATAAV 489
A A+
Sbjct: 218 NKSYAEKAI 226
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHR 49
+GFGYVQF+ MEDA +A++ G + R + + + R
Sbjct: 308 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 346
Score = 33.9 bits (76), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSK 58
++ ++G++ RG+GYV F A +A++ G + GR I + + + R+K
Sbjct: 199 VIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK 256
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 129/294 (43%), Gaps = 50/294 (17%)
Query: 251 NTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK--RPIAVDWAVPKNIYSSGGAAAGA 308
N + GLS+G+ FV+F A+ +++FNG +P ++WA +S+G
Sbjct: 137 NKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWAS----FSTG------ 186
Query: 309 YEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNK 368
E ++N G S +GD + + + + + E PS V A+ VL+
Sbjct: 187 -EKRLENNGPDLSIF-----VGDLSPDVSDNLLHETFSEKYPS-------VKAAKVVLDA 233
Query: 369 LT--STTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVS--KLNSSKSK----PK-S 419
T S D++ K E + K + + ++ + K N + + P +
Sbjct: 234 NTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGT 293
Query: 420 LKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLK 478
L + EG D + TIF+ L + +E++KQ F+ FGE+VS +PV KG GF++
Sbjct: 294 LTRPEG-DIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG-------KGCGFVQ 345
Query: 479 FKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETND 532
F A A+ T + G+Q TV + + A+ + DK N+ D
Sbjct: 346 FVNRPNAEEALEKLNGT------VIGKQ-TVRLSWGRNPANKQPRDKYGNQWVD 392
Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291
++K F+ G + +V IP + KG FV+F + +AE A++K NG GK+ + +
Sbjct: 319 DLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLS 372
Query: 292 WA 293
W
Sbjct: 373 WG 374
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E S + KL + N+PF ++ +F G V V + ++ TG S+GF FV +
Sbjct: 84 EQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVS 143
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVP 295
+ E+A Q+FNG + RP+ V+ P
Sbjct: 144 EVEAAAQQFNGYELDGRPLRVNAGPP 169
Score = 40.8 bits (94), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 433 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 492
+F+ NLPF++D+ ++ Q F + G V + ++T R +G GF+ +V AA
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 493 KTTSGLGIFLKGRQLTV 509
G L GR L V
Sbjct: 153 N-----GYELDGRPLRV 164
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
++ + N+ + ++ +FS G V + ++ D+G SKGF FV + ++ ++AI+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 278 FNGQKFGKRPIAV 290
+G R I V
Sbjct: 265 LDGADLDGRQIRV 277
>sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing protein 1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MRD1 PE=3 SV=1
Length = 861
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 170 CKMDASAVLYTTVKSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK----WKLIIR 222
M V + T + A A ++ + I G + + + G GS+ +K K+I++
Sbjct: 684 LSMGFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAGSQEKKKAKNGKIIVK 743
Query: 223 NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG-Q 281
N+PF+A ++ ++F+ G + +V +P D ++GFAFV+F ++AE+A+ + G
Sbjct: 744 NLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFVLPKEAENAMDQLQGVH 802
Query: 282 KFGKRPI 288
G+R +
Sbjct: 803 LLGRRLV 809
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 212 SKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
+K QK +L +RNI + + ++ K +FSP G + V++ +T TG SKGFA+V F +
Sbjct: 319 AKIQKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEE 378
Query: 271 AESAIQKFNGQKFGKRPIAV 290
A A + + Q F R + +
Sbjct: 379 AVQAYIELDKQIFQGRLLHI 398
Score = 40.0 bits (92), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 102/283 (36%), Gaps = 101/283 (35%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
++++N PF E+ ++F P G + + +P + A V+F SA K
Sbjct: 514 ILVKNFPFGTTREELGELFVPFGKLERLLMPP------AGTIAIVQFRDIASGRSAFSKL 567
Query: 279 NGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETAS 338
++F I ++ PK+ ++ A + ED +++
Sbjct: 568 AFKRFKGTVIYLEKG-PKDCFTK----AASNEDAMEH----------------------- 599
Query: 339 DDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTV 398
D S KE PS+AD E V ++K +K +D D+ V
Sbjct: 600 -DEEKSAKEAGPSSADLLESVS-SKKTEDK-----------------------EDEDEQV 634
Query: 399 NESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 458
+ VS IFI NL F ++++ RF F V
Sbjct: 635 VDGPTVS---------------------------IFIKNLNFKTTSQQLTDRFKVFSGFV 667
Query: 459 SFVPVLHQVTKRP----------KGTGFLKFKTVEAATAAVSA 491
+ QV +P G GF++F+T E ATA +SA
Sbjct: 668 -----VAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQATAVISA 705
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 433 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 492
I + NLPF+ ++V + F++FG++ S V V + K +G F++F + A A+
Sbjct: 740 IIVKNLPFEATRKDVFELFNSFGQLKS-VRVPKKFDKSARGFAFVEFVLPKEAENAMDQL 798
Query: 493 KTTSGLGIFLKGRQLTV 509
+ G+ L GR+L +
Sbjct: 799 Q-----GVHLLGRRLVM 810
>sp|Q6DRC4|EIF3G_DANRE Eukaryotic translation initiation factor 3 subunit G OS=Danio rerio
GN=eif3g PE=1 SV=1
Length = 293
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 221 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280
+ N+ + +++++F P G + +Y+ + +TG SKGFAF+ F + DA AI +G
Sbjct: 216 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFISFHRREDAARAIAGVSG 275
Query: 281 QKFGKRPIAVDWAVPKN 297
+ + V+WA P N
Sbjct: 276 FGYDHLILNVEWAKPSN 292
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
K+ + N+PF A + ++F G V V + ++ TG S+GF FV + K + E+A Q+
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 278 FNGQKFGKRPIAVDWAVP 295
FNG + R + V+ P
Sbjct: 148 FNGYELDGRALRVNSGPP 165
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQ 54
+V + S RGFG+V ++ E+ N A+E +G + GR I V A R Q
Sbjct: 219 VVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQ 272
Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
++ + N+ + + ++ +FS G V + + ++ D+G S+GF FV ++ + +AI+
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 278 FNGQKFGKRPIAVDWA 293
+G R I V A
Sbjct: 249 LDGVDLNGRAIRVSPA 264
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 433 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 492
IF+ NLPF D+ + + F G V + ++T R +G GF+ + E AA
Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148
Query: 493 KTTSGLGIFLKGRQLTV 509
G L GR L V
Sbjct: 149 N-----GYELDGRALRV 160
Score = 33.5 bits (75), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 431 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVS 490
N +++ NL + +D + ++ FS G+VV V + + R +G GF+ + + E A+
Sbjct: 188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 247
Query: 491 ASKTTSGLGIFLKGRQLTVLKA 512
+ G+ L GR + V A
Sbjct: 248 SLD-----GVDLNGRAIRVSPA 264
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L + N+PF +++ ++F+ G V NV I ++ T S+GFAFV +A+ AI+
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 278 FNGQKFGKRPIAVDWA-VPK 296
F+G + G R + V++ VP+
Sbjct: 175 FDGSQVGGRTVKVNFPEVPR 194
>sp|Q6MFP4|EIF3G_NEUCR Eukaryotic translation initiation factor 3 subunit G OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=tif-35 PE=3 SV=2
Length = 297
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ A+ E++DMF G V V++ + DTGL+KGFAF+ F + DA A K
Sbjct: 219 LRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADRSDAVKACAKM 278
Query: 279 NGQKFGKRPIAVDWA 293
+G F + V++A
Sbjct: 279 DGFGFRHLILRVEFA 293
>sp|Q5D018|RBM8A_DANRE RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1
Length = 174
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 48/84 (57%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + W L + + +A ++ D F+ G + N+++ + TG KG+A V++
Sbjct: 65 GPQRSVEGWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETY 124
Query: 269 RDAESAIQKFNGQKFGKRPIAVDW 292
++A++A++ NGQ+ +PI+VDW
Sbjct: 125 KEAQAAMEGLNGQELMGQPISVDW 148
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 333,052,317
Number of Sequences: 539616
Number of extensions: 14738214
Number of successful extensions: 65548
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 1099
Number of HSP's that attempted gapping in prelim test: 49760
Number of HSP's gapped (non-prelim): 10204
length of query: 890
length of database: 191,569,459
effective HSP length: 127
effective length of query: 763
effective length of database: 123,038,227
effective search space: 93878167201
effective search space used: 93878167201
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)