Query 002709
Match_columns 890
No_of_seqs 517 out of 4256
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:33:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0127 Nucleolar protein fibr 100.0 2.4E-64 5.3E-69 542.7 38.6 508 122-696 6-543 (678)
2 TIGR01628 PABP-1234 polyadenyl 100.0 6.7E-49 1.5E-53 467.6 44.5 369 123-696 2-376 (562)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.9E-44 1.7E-48 414.0 46.3 444 121-678 2-478 (481)
4 TIGR01628 PABP-1234 polyadenyl 100.0 2.1E-44 4.6E-49 429.0 35.3 327 1-518 32-367 (562)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.4E-40 1.2E-44 369.3 37.6 345 121-516 3-350 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.7E-40 1.5E-44 368.6 33.7 312 216-678 3-347 (352)
7 KOG0123 Polyadenylate-binding 100.0 7.4E-39 1.6E-43 354.1 30.6 359 123-696 3-361 (369)
8 KOG0110 RNA-binding protein (R 100.0 7.7E-39 1.7E-43 357.6 28.4 319 216-694 385-706 (725)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.7E-36 3.7E-41 352.7 40.1 336 10-515 37-480 (481)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 1E-36 2.3E-41 351.1 32.9 301 120-605 57-364 (578)
11 KOG0145 RNA-binding protein EL 100.0 7.4E-36 1.6E-40 295.8 25.2 301 213-677 38-355 (360)
12 KOG0145 RNA-binding protein EL 100.0 8.2E-36 1.8E-40 295.5 23.8 315 122-515 42-358 (360)
13 KOG0123 Polyadenylate-binding 100.0 2.9E-36 6.4E-41 333.5 22.9 312 2-516 31-350 (369)
14 KOG0117 Heterogeneous nuclear 100.0 1.8E-35 3.9E-40 314.0 24.6 249 118-517 80-333 (506)
15 TIGR01648 hnRNP-R-Q heterogene 100.0 1.6E-34 3.6E-39 332.9 30.7 278 181-678 18-305 (578)
16 KOG0127 Nucleolar protein fibr 100.0 5.7E-34 1.2E-38 308.2 26.2 338 217-678 6-376 (678)
17 KOG0117 Heterogeneous nuclear 100.0 1.4E-33 3E-38 299.7 28.3 289 179-687 41-338 (506)
18 TIGR01622 SF-CC1 splicing fact 100.0 2E-32 4.3E-37 318.7 37.0 338 118-514 86-447 (457)
19 TIGR01622 SF-CC1 splicing fact 100.0 1.6E-32 3.6E-37 319.4 33.2 323 214-680 87-448 (457)
20 TIGR01642 U2AF_lg U2 snRNP aux 100.0 9.7E-32 2.1E-36 317.3 32.5 277 117-514 171-501 (509)
21 TIGR01645 half-pint poly-U bin 100.0 3.7E-30 7.9E-35 297.0 36.9 169 119-296 105-284 (612)
22 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.3E-30 5E-35 305.6 32.4 309 213-680 172-502 (509)
23 KOG0148 Apoptosis-promoting RN 100.0 6.2E-31 1.3E-35 263.3 21.8 232 120-515 5-238 (321)
24 KOG0144 RNA-binding protein CU 100.0 6.1E-30 1.3E-34 270.7 22.9 382 120-516 33-505 (510)
25 KOG0144 RNA-binding protein CU 100.0 7.6E-30 1.6E-34 269.9 22.3 173 214-518 32-209 (510)
26 KOG0110 RNA-binding protein (R 100.0 3.5E-30 7.6E-35 288.5 17.4 366 11-516 246-694 (725)
27 KOG0148 Apoptosis-promoting RN 100.0 1.2E-29 2.6E-34 254.1 18.7 175 431-680 63-238 (321)
28 TIGR01659 sex-lethal sex-letha 100.0 4.7E-27 1E-31 259.2 21.8 172 212-516 103-276 (346)
29 TIGR01659 sex-lethal sex-letha 99.9 8.4E-27 1.8E-31 257.2 22.2 172 426-679 103-274 (346)
30 TIGR01645 half-pint poly-U bin 99.9 8.8E-26 1.9E-30 260.9 21.9 180 215-516 106-285 (612)
31 KOG1190 Polypyrimidine tract-b 99.9 2.4E-24 5.3E-29 226.8 28.8 418 119-678 26-489 (492)
32 KOG0124 Polypyrimidine tract-b 99.9 1E-23 2.2E-28 218.3 23.6 178 216-515 113-290 (544)
33 KOG0147 Transcriptional coacti 99.9 7.3E-25 1.6E-29 240.2 11.2 326 216-678 179-526 (549)
34 KOG0147 Transcriptional coacti 99.9 1.4E-23 3E-28 230.3 17.1 328 116-513 174-526 (549)
35 KOG0124 Polypyrimidine tract-b 99.9 6.6E-22 1.4E-26 205.0 24.2 169 117-294 109-288 (544)
36 KOG0131 Splicing factor 3b, su 99.9 4.9E-23 1.1E-27 196.1 12.6 172 213-516 6-178 (203)
37 KOG0131 Splicing factor 3b, su 99.9 1.8E-22 3.9E-27 192.2 12.5 169 120-297 8-178 (203)
38 KOG4212 RNA-binding protein hn 99.9 4.6E-21 9.9E-26 203.1 23.7 242 119-511 42-290 (608)
39 KOG1456 Heterogeneous nuclear 99.9 5.1E-19 1.1E-23 184.6 36.4 436 117-677 27-486 (494)
40 KOG0146 RNA-binding protein ET 99.8 2.5E-19 5.5E-24 179.2 11.4 226 429-677 18-362 (371)
41 KOG0146 RNA-binding protein ET 99.8 8.5E-19 1.8E-23 175.5 15.0 298 200-516 3-366 (371)
42 KOG0109 RNA-binding protein LA 99.8 2.6E-19 5.6E-24 181.9 11.0 147 123-296 4-150 (346)
43 KOG0109 RNA-binding protein LA 99.8 2.8E-19 6E-24 181.6 10.8 148 218-516 4-151 (346)
44 KOG4211 Splicing factor hnRNP- 99.8 8.1E-17 1.8E-21 175.1 30.1 459 120-661 9-494 (510)
45 KOG4212 RNA-binding protein hn 99.8 1.5E-17 3.3E-22 176.5 21.5 212 5-293 80-291 (608)
46 KOG1190 Polypyrimidine tract-b 99.8 6.7E-17 1.5E-21 171.1 23.3 273 120-513 149-489 (492)
47 KOG4211 Splicing factor hnRNP- 99.7 9.2E-17 2E-21 174.7 22.3 300 214-658 8-340 (510)
48 KOG4205 RNA-binding protein mu 99.7 1.5E-16 3.3E-21 170.6 11.4 175 215-518 5-179 (311)
49 KOG4205 RNA-binding protein mu 99.7 2.6E-16 5.6E-21 168.8 10.7 171 120-301 5-181 (311)
50 KOG0120 Splicing factor U2AF, 99.6 1.4E-15 3E-20 170.5 14.5 273 116-513 170-490 (500)
51 KOG0120 Splicing factor U2AF, 99.6 2.7E-15 5.8E-20 168.2 15.9 306 213-680 172-492 (500)
52 KOG4206 Spliceosomal protein s 99.6 2.4E-14 5.2E-19 142.8 18.1 207 216-513 9-220 (221)
53 KOG0105 Alternative splicing f 99.6 8.5E-15 1.8E-19 139.8 13.4 154 119-291 4-185 (241)
54 KOG4206 Spliceosomal protein s 99.6 3.6E-14 7.7E-19 141.6 17.3 204 429-677 8-219 (221)
55 KOG1456 Heterogeneous nuclear 99.5 5.8E-13 1.3E-17 139.7 22.1 304 213-678 28-361 (494)
56 PLN03134 glycine-rich RNA-bind 99.5 5.9E-14 1.3E-18 136.2 11.8 83 429-516 33-115 (144)
57 PLN03134 glycine-rich RNA-bind 99.5 7.5E-14 1.6E-18 135.5 12.2 85 213-297 31-115 (144)
58 KOG0105 Alternative splicing f 99.5 2.8E-13 6.1E-18 129.5 15.5 183 214-511 4-186 (241)
59 KOG1365 RNA-binding protein Fu 99.5 4.6E-13 9.9E-18 140.9 17.8 272 123-514 62-361 (508)
60 KOG1457 RNA binding protein (c 99.5 9.8E-13 2.1E-17 129.5 17.2 83 215-297 33-119 (284)
61 KOG1457 RNA binding protein (c 99.5 9.9E-13 2.1E-17 129.5 17.0 211 427-662 31-271 (284)
62 KOG1548 Transcription elongati 99.4 7E-12 1.5E-16 131.3 19.9 199 427-674 131-345 (382)
63 KOG1365 RNA-binding protein Fu 99.4 3.9E-12 8.4E-17 134.0 15.8 284 215-662 59-347 (508)
64 KOG0122 Translation initiation 99.4 1.3E-12 2.7E-17 130.9 9.7 84 213-296 186-269 (270)
65 PF00076 RRM_1: RNA recognitio 99.4 2.4E-12 5.2E-17 108.7 9.5 70 219-289 1-70 (70)
66 PF00076 RRM_1: RNA recognitio 99.4 2.9E-12 6.2E-17 108.3 9.7 70 433-508 1-70 (70)
67 KOG0122 Translation initiation 99.4 3E-12 6.5E-17 128.3 10.8 84 427-515 186-269 (270)
68 KOG1548 Transcription elongati 99.3 2E-11 4.4E-16 127.8 16.5 166 117-296 130-352 (382)
69 KOG0121 Nuclear cap-binding pr 99.3 2.7E-12 5.8E-17 116.0 6.9 79 215-293 35-113 (153)
70 KOG0106 Alternative splicing f 99.3 4.7E-12 1E-16 128.0 7.4 146 122-292 2-167 (216)
71 COG0724 RNA-binding proteins ( 99.3 2.9E-11 6.4E-16 129.9 14.0 80 216-295 115-194 (306)
72 KOG0106 Alternative splicing f 99.3 7.7E-12 1.7E-16 126.5 8.6 167 217-512 2-168 (216)
73 KOG0114 Predicted RNA-binding 99.3 1.9E-11 4.1E-16 106.5 8.9 81 428-516 16-96 (124)
74 PF14259 RRM_6: RNA recognitio 99.3 2.8E-11 6.1E-16 102.6 9.9 70 219-289 1-70 (70)
75 PF14259 RRM_6: RNA recognitio 99.2 2.9E-11 6.3E-16 102.5 9.2 70 433-508 1-70 (70)
76 KOG0125 Ataxin 2-binding prote 99.2 1.4E-11 3.1E-16 128.0 8.2 102 193-296 73-174 (376)
77 COG0724 RNA-binding proteins ( 99.2 9E-11 1.9E-15 126.1 14.2 171 430-661 115-289 (306)
78 KOG0121 Nuclear cap-binding pr 99.2 2.2E-11 4.7E-16 110.2 7.1 79 430-513 36-114 (153)
79 KOG0149 Predicted RNA-binding 99.2 1.7E-11 3.8E-16 122.6 7.0 78 430-513 12-89 (247)
80 PLN03120 nucleic acid binding 99.2 5.6E-11 1.2E-15 123.3 10.0 75 216-294 4-78 (260)
81 PLN03120 nucleic acid binding 99.2 8.3E-11 1.8E-15 122.1 10.8 77 430-515 4-80 (260)
82 KOG0107 Alternative splicing f 99.2 3.9E-11 8.5E-16 114.6 7.2 77 214-295 8-84 (195)
83 KOG0111 Cyclophilin-type pepti 99.2 2.9E-11 6.2E-16 118.8 5.3 90 213-302 7-96 (298)
84 KOG0130 RNA-binding protein RB 99.1 7.1E-11 1.5E-15 107.7 6.9 86 211-296 67-152 (170)
85 KOG0126 Predicted RNA-binding 99.1 8.9E-12 1.9E-16 119.3 0.9 82 213-294 32-113 (219)
86 KOG4207 Predicted splicing fac 99.1 8.7E-11 1.9E-15 114.7 7.2 79 430-513 13-91 (256)
87 KOG4207 Predicted splicing fac 99.1 7.6E-11 1.7E-15 115.1 6.8 84 211-294 8-91 (256)
88 KOG0125 Ataxin 2-binding prote 99.1 2.2E-10 4.7E-15 119.3 10.3 79 430-515 96-174 (376)
89 KOG0149 Predicted RNA-binding 99.1 7E-11 1.5E-15 118.3 6.5 80 214-294 10-89 (247)
90 PLN03213 repressor of silencin 99.1 1.6E-10 3.4E-15 125.3 9.4 79 214-296 8-88 (759)
91 KOG0126 Predicted RNA-binding 99.1 1.1E-11 2.5E-16 118.6 0.5 82 429-515 34-115 (219)
92 KOG0130 RNA-binding protein RB 99.1 1.1E-10 2.4E-15 106.4 6.7 84 427-515 69-152 (170)
93 KOG0113 U1 small nuclear ribon 99.1 2.6E-10 5.6E-15 117.4 10.0 81 428-513 99-179 (335)
94 smart00362 RRM_2 RNA recogniti 99.1 4.4E-10 9.6E-15 94.3 9.7 71 432-509 1-71 (72)
95 PLN03213 repressor of silencin 99.1 2.8E-10 6E-15 123.5 10.1 78 429-515 9-88 (759)
96 PLN03121 nucleic acid binding 99.1 3.6E-10 7.7E-15 115.5 10.1 76 215-294 4-79 (243)
97 KOG0114 Predicted RNA-binding 99.1 3.7E-10 7.9E-15 98.6 8.7 83 213-298 15-97 (124)
98 smart00362 RRM_2 RNA recogniti 99.1 4.8E-10 1E-14 94.1 8.9 71 218-290 1-71 (72)
99 KOG0107 Alternative splicing f 99.1 3.7E-10 8E-15 108.0 8.4 77 429-515 9-85 (195)
100 KOG0113 U1 small nuclear ribon 99.1 4.2E-10 9.1E-15 115.9 8.7 82 213-294 98-179 (335)
101 smart00360 RRM RNA recognition 99.1 7.5E-10 1.6E-14 92.5 8.9 70 435-509 1-70 (71)
102 PLN03121 nucleic acid binding 99.0 8.4E-10 1.8E-14 112.8 10.6 77 430-515 5-81 (243)
103 KOG4307 RNA binding protein RB 99.0 1.3E-08 2.8E-13 114.9 20.9 156 10-204 351-508 (944)
104 KOG0111 Cyclophilin-type pepti 99.0 1.1E-10 2.5E-15 114.6 3.8 81 430-515 10-90 (298)
105 smart00360 RRM RNA recognition 99.0 7.2E-10 1.6E-14 92.6 7.9 71 221-291 1-71 (71)
106 KOG4307 RNA binding protein RB 99.0 4.2E-09 9.1E-14 118.8 15.9 162 121-294 311-512 (944)
107 KOG4660 Protein Mei2, essentia 99.0 1.2E-09 2.7E-14 121.6 11.6 160 114-296 68-250 (549)
108 KOG0128 RNA-binding protein SA 99.0 6.4E-12 1.4E-16 145.1 -8.3 306 121-661 479-799 (881)
109 cd00590 RRM RRM (RNA recogniti 99.0 3.1E-09 6.8E-14 89.6 10.1 74 432-511 1-74 (74)
110 cd00590 RRM RRM (RNA recogniti 99.0 3.1E-09 6.7E-14 89.7 9.5 74 218-292 1-74 (74)
111 KOG0108 mRNA cleavage and poly 99.0 1.1E-09 2.4E-14 123.1 7.9 79 217-295 19-97 (435)
112 KOG0108 mRNA cleavage and poly 98.9 1.6E-09 3.4E-14 121.8 8.4 82 431-517 19-100 (435)
113 PF13893 RRM_5: RNA recognitio 98.9 5.7E-09 1.2E-13 84.3 8.3 56 233-293 1-56 (56)
114 KOG0128 RNA-binding protein SA 98.9 1.9E-10 4.1E-15 133.2 -2.5 199 13-295 616-814 (881)
115 PF13893 RRM_5: RNA recognitio 98.9 1.1E-08 2.3E-13 82.7 8.3 56 447-512 1-56 (56)
116 smart00361 RRM_1 RNA recogniti 98.8 1.3E-08 2.7E-13 86.4 8.5 61 444-509 2-69 (70)
117 KOG0129 Predicted RNA-binding 98.8 4.7E-08 1E-12 108.4 15.1 172 212-492 255-433 (520)
118 smart00361 RRM_1 RNA recogniti 98.8 1.3E-08 2.8E-13 86.3 7.9 61 230-290 2-69 (70)
119 KOG0129 Predicted RNA-binding 98.8 5.7E-08 1.2E-12 107.7 14.9 157 117-277 255-432 (520)
120 KOG0415 Predicted peptidyl pro 98.8 8.2E-09 1.8E-13 108.3 7.0 83 428-515 237-319 (479)
121 KOG0415 Predicted peptidyl pro 98.7 1.5E-08 3.2E-13 106.4 6.2 85 212-296 235-319 (479)
122 KOG4454 RNA binding protein (R 98.7 5E-09 1.1E-13 103.5 1.6 138 119-281 7-148 (267)
123 KOG4208 Nucleolar RNA-binding 98.7 6.3E-08 1.4E-12 95.6 8.1 83 214-296 47-130 (214)
124 KOG4210 Nuclear localization s 98.6 4.9E-08 1.1E-12 105.2 5.7 168 119-296 86-264 (285)
125 KOG4208 Nucleolar RNA-binding 98.6 1.4E-07 3.1E-12 93.1 8.4 83 428-515 47-130 (214)
126 KOG0112 Large RNA-binding prot 98.6 3.7E-08 8.1E-13 114.9 4.4 163 117-297 368-532 (975)
127 KOG4661 Hsp27-ERE-TATA-binding 98.5 3E-07 6.6E-12 101.6 10.3 85 426-515 401-485 (940)
128 KOG4454 RNA binding protein (R 98.5 2E-08 4.2E-13 99.4 0.9 80 212-293 5-84 (267)
129 KOG4210 Nuclear localization s 98.5 7.4E-08 1.6E-12 103.8 4.9 177 215-516 87-265 (285)
130 KOG0153 Predicted RNA-binding 98.5 2.9E-07 6.2E-12 97.3 8.8 79 427-515 225-303 (377)
131 KOG0132 RNA polymerase II C-te 98.5 3.1E-07 6.7E-12 105.7 7.7 77 429-516 420-496 (894)
132 KOG0132 RNA polymerase II C-te 98.4 4.2E-07 9.1E-12 104.7 7.6 77 216-298 421-497 (894)
133 KOG0153 Predicted RNA-binding 98.4 6.3E-07 1.4E-11 94.8 8.0 78 212-295 224-302 (377)
134 KOG0226 RNA-binding proteins [ 98.4 2.2E-07 4.8E-12 94.2 4.1 159 124-292 99-266 (290)
135 KOG0112 Large RNA-binding prot 98.4 2.1E-07 4.4E-12 108.9 4.4 163 426-679 368-530 (975)
136 KOG0226 RNA-binding proteins [ 98.4 3E-07 6.6E-12 93.2 4.2 81 431-516 191-271 (290)
137 KOG4661 Hsp27-ERE-TATA-binding 98.3 1.6E-06 3.6E-11 96.0 7.3 81 214-294 403-483 (940)
138 KOG0533 RRM motif-containing p 98.2 3E-06 6.6E-11 88.1 8.5 82 431-518 84-165 (243)
139 PF04059 RRM_2: RNA recognitio 98.2 2E-05 4.3E-10 70.5 12.0 82 582-677 1-84 (97)
140 PF04059 RRM_2: RNA recognitio 98.2 6.5E-06 1.4E-10 73.6 8.9 78 217-294 2-85 (97)
141 KOG0533 RRM motif-containing p 98.2 4.1E-06 9E-11 87.2 8.5 84 214-298 81-164 (243)
142 KOG4676 Splicing factor, argin 98.1 2.1E-06 4.6E-11 91.8 4.5 75 218-293 9-86 (479)
143 KOG0116 RasGAP SH3 binding pro 98.1 6.7E-06 1.5E-10 92.3 7.3 80 429-514 287-366 (419)
144 KOG0151 Predicted splicing reg 98.0 1.4E-05 3.1E-10 91.3 8.7 82 427-513 171-255 (877)
145 KOG4209 Splicing factor RNPS1, 98.0 1.1E-05 2.3E-10 84.4 6.4 83 213-296 98-180 (231)
146 KOG0116 RasGAP SH3 binding pro 97.9 1.6E-05 3.4E-10 89.4 6.4 79 216-295 288-366 (419)
147 KOG0151 Predicted splicing reg 97.9 2.7E-05 5.8E-10 89.2 7.3 83 213-295 171-256 (877)
148 KOG4676 Splicing factor, argin 97.8 9.3E-06 2E-10 87.0 3.1 151 122-284 8-214 (479)
149 KOG4660 Protein Mei2, essentia 97.8 2.4E-05 5.3E-10 88.0 4.9 72 427-508 72-143 (549)
150 KOG2193 IGF-II mRNA-binding pr 97.7 3.1E-06 6.6E-11 91.2 -2.4 154 218-515 3-157 (584)
151 KOG2193 IGF-II mRNA-binding pr 97.7 4.1E-06 8.8E-11 90.3 -2.5 150 123-293 3-154 (584)
152 PF11608 Limkain-b1: Limkain b 97.7 0.00023 5.1E-09 60.7 8.5 74 583-679 3-76 (90)
153 KOG4209 Splicing factor RNPS1, 97.7 4.8E-05 1E-09 79.6 5.3 78 430-513 101-178 (231)
154 PF11608 Limkain-b1: Limkain b 97.5 0.00032 7E-09 59.9 6.5 68 431-513 3-75 (90)
155 PF08777 RRM_3: RNA binding mo 97.5 0.00026 5.6E-09 64.9 6.4 75 431-511 2-76 (105)
156 KOG1995 Conserved Zn-finger pr 97.1 0.0005 1.1E-08 74.0 4.4 85 213-297 63-155 (351)
157 PF08777 RRM_3: RNA binding mo 97.1 0.0012 2.6E-08 60.5 6.3 70 217-292 2-76 (105)
158 KOG1995 Conserved Zn-finger pr 97.0 0.00058 1.3E-08 73.5 4.4 82 430-516 66-155 (351)
159 COG5175 MOT2 Transcriptional r 96.8 0.0027 5.8E-08 67.2 6.9 80 431-515 115-203 (480)
160 COG5175 MOT2 Transcriptional r 96.7 0.0031 6.7E-08 66.7 6.3 82 215-296 113-203 (480)
161 KOG2416 Acinus (induces apopto 96.6 0.004 8.6E-08 70.7 6.7 92 569-680 431-522 (718)
162 KOG0115 RNA-binding protein p5 96.5 0.0057 1.2E-07 63.0 6.4 79 432-512 33-111 (275)
163 PF14605 Nup35_RRM_2: Nup53/35 96.3 0.008 1.7E-07 47.8 4.9 52 217-275 2-53 (53)
164 KOG2314 Translation initiation 96.2 0.013 2.8E-07 66.3 8.1 79 214-293 56-141 (698)
165 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.013 2.8E-07 46.6 5.9 52 122-189 2-53 (53)
166 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.018 3.9E-07 52.1 6.6 78 215-294 5-90 (100)
167 KOG3152 TBP-binding protein, a 96.0 0.0047 1E-07 63.6 2.8 73 215-287 73-157 (278)
168 KOG0115 RNA-binding protein p5 95.9 0.012 2.5E-07 60.8 5.5 101 184-292 6-110 (275)
169 PF08675 RNA_bind: RNA binding 95.8 0.032 7E-07 47.9 6.7 60 212-280 5-64 (87)
170 PF05172 Nup35_RRM: Nup53/35/4 95.8 0.043 9.2E-07 49.7 7.9 80 120-203 5-84 (100)
171 KOG2314 Translation initiation 95.7 0.035 7.6E-07 63.0 8.7 80 428-513 56-142 (698)
172 KOG1855 Predicted RNA-binding 95.7 0.011 2.4E-07 64.9 4.5 66 428-493 229-307 (484)
173 KOG3152 TBP-binding protein, a 95.5 0.0082 1.8E-07 61.8 2.7 72 430-506 74-157 (278)
174 KOG4849 mRNA cleavage factor I 95.4 0.012 2.7E-07 62.6 3.5 79 215-293 79-159 (498)
175 KOG4849 mRNA cleavage factor I 95.3 0.015 3.3E-07 61.9 3.8 75 121-204 80-156 (498)
176 KOG1855 Predicted RNA-binding 95.0 0.03 6.5E-07 61.6 5.1 69 581-662 230-309 (484)
177 KOG2202 U2 snRNP splicing fact 95.0 0.011 2.4E-07 61.2 1.5 62 231-293 83-145 (260)
178 KOG1996 mRNA splicing factor [ 94.9 0.067 1.4E-06 56.1 7.1 78 431-513 282-365 (378)
179 KOG1996 mRNA splicing factor [ 94.8 0.056 1.2E-06 56.6 6.3 65 230-294 300-365 (378)
180 KOG2416 Acinus (induces apopto 94.4 0.04 8.6E-07 62.9 4.4 78 212-295 440-521 (718)
181 PF08952 DUF1866: Domain of un 94.4 0.18 3.9E-06 48.5 8.1 74 214-296 25-107 (146)
182 PF15023 DUF4523: Protein of u 93.9 0.19 4.1E-06 47.6 7.0 72 429-513 85-160 (166)
183 KOG2202 U2 snRNP splicing fact 93.8 0.032 6.9E-07 57.9 1.9 63 445-513 83-146 (260)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 93.6 0.2 4.2E-06 50.6 7.2 79 215-293 6-95 (176)
185 PF08952 DUF1866: Domain of un 92.5 0.58 1.3E-05 45.1 8.0 72 429-514 26-106 (146)
186 PF10309 DUF2414: Protein of u 91.9 0.77 1.7E-05 37.6 7.0 53 431-492 6-62 (62)
187 PF15023 DUF4523: Protein of u 91.0 0.76 1.6E-05 43.7 6.9 74 213-294 83-160 (166)
188 PF10309 DUF2414: Protein of u 90.9 0.79 1.7E-05 37.5 6.1 53 217-278 6-62 (62)
189 KOG2591 c-Mpl binding protein, 90.8 0.63 1.4E-05 53.2 7.3 94 183-289 148-245 (684)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 90.1 0.34 7.3E-06 48.9 4.2 80 430-514 7-97 (176)
191 PF08675 RNA_bind: RNA binding 90.1 0.83 1.8E-05 39.5 5.8 55 584-662 11-65 (87)
192 KOG2068 MOT2 transcription fac 89.2 0.16 3.5E-06 54.9 1.1 81 431-516 78-164 (327)
193 KOG4285 Mitotic phosphoprotein 88.3 1.4 3E-05 46.9 7.1 73 216-296 197-270 (350)
194 KOG2068 MOT2 transcription fac 87.8 0.27 5.9E-06 53.2 1.7 81 217-297 78-164 (327)
195 KOG4285 Mitotic phosphoprotein 85.6 2.2 4.7E-05 45.5 6.9 63 122-201 198-260 (350)
196 KOG2591 c-Mpl binding protein, 84.7 1.1 2.4E-05 51.2 4.6 69 121-205 175-247 (684)
197 PF10567 Nab6_mRNP_bdg: RNA-re 84.6 22 0.00047 38.3 13.6 205 429-678 14-230 (309)
198 KOG2135 Proteins containing th 84.4 0.57 1.2E-05 52.6 2.1 74 217-297 373-447 (526)
199 PF04847 Calcipressin: Calcipr 84.3 1.8 4E-05 43.8 5.5 62 229-296 8-71 (184)
200 PF07576 BRAP2: BRCA1-associat 82.5 9.9 0.00021 35.2 9.1 66 217-284 14-80 (110)
201 KOG2135 Proteins containing th 80.9 1 2.2E-05 50.6 2.4 73 430-514 372-445 (526)
202 KOG0804 Cytoplasmic Zn-finger 80.0 5.6 0.00012 44.8 7.7 69 581-667 73-141 (493)
203 PF07576 BRAP2: BRCA1-associat 79.8 13 0.00028 34.4 8.9 64 583-662 13-77 (110)
204 PF07292 NID: Nmi/IFP 35 domai 78.4 3.8 8.2E-05 36.2 4.7 64 175-238 1-74 (88)
205 KOG4574 RNA-binding protein (c 77.4 1.6 3.5E-05 52.5 2.7 79 218-302 300-380 (1007)
206 KOG2253 U1 snRNP complex, subu 76.0 2.5 5.3E-05 49.8 3.6 72 426-511 36-107 (668)
207 PF04847 Calcipressin: Calcipr 70.6 11 0.00023 38.3 6.4 63 443-514 8-70 (184)
208 KOG0804 Cytoplasmic Zn-finger 68.5 13 0.00028 42.0 6.9 68 430-504 74-142 (493)
209 PF07292 NID: Nmi/IFP 35 domai 67.8 6.9 0.00015 34.6 3.7 33 14-46 1-34 (88)
210 KOG2253 U1 snRNP complex, subu 64.6 4.9 0.00011 47.4 2.8 71 213-292 37-107 (668)
211 KOG4574 RNA-binding protein (c 63.8 6 0.00013 47.9 3.4 73 584-678 300-372 (1007)
212 KOG2318 Uncharacterized conser 59.0 34 0.00073 40.1 8.0 92 580-679 172-307 (650)
213 PF03880 DbpA: DbpA RNA bindin 57.6 36 0.00078 28.9 6.3 59 226-293 11-74 (74)
214 PF03880 DbpA: DbpA RNA bindin 57.4 11 0.00025 32.0 3.2 34 12-46 41-74 (74)
215 PF11767 SET_assoc: Histone ly 53.0 18 0.0004 30.1 3.6 29 15-43 37-65 (66)
216 KOG2318 Uncharacterized conser 50.8 56 0.0012 38.3 8.1 81 213-293 171-305 (650)
217 PF11767 SET_assoc: Histone ly 46.2 76 0.0016 26.5 6.2 55 227-290 11-65 (66)
218 PF14111 DUF4283: Domain of un 43.6 33 0.00072 33.2 4.5 78 172-250 55-139 (153)
219 TIGR02542 B_forsyth_147 Bacter 41.6 64 0.0014 29.7 5.4 44 225-268 83-129 (145)
220 KOG4019 Calcineurin-mediated s 35.2 36 0.00079 34.0 3.1 74 217-296 11-90 (193)
221 PF14111 DUF4283: Domain of un 32.5 26 0.00057 33.9 1.8 83 10-153 54-137 (153)
222 KOG4410 5-formyltetrahydrofola 31.4 68 0.0015 34.2 4.5 51 118-183 327-378 (396)
223 KOG4019 Calcineurin-mediated s 30.9 40 0.00087 33.7 2.7 74 431-515 11-90 (193)
224 KOG3424 40S ribosomal protein 28.9 2E+02 0.0044 26.7 6.5 51 593-654 34-84 (132)
225 KOG2295 C2H2 Zn-finger protein 24.3 14 0.0003 42.8 -2.0 74 215-288 230-303 (648)
226 PF03468 XS: XS domain; Inter 23.6 73 0.0016 29.8 2.9 56 432-490 10-75 (116)
227 KOG2295 C2H2 Zn-finger protein 23.5 12 0.00027 43.2 -2.6 73 429-506 230-302 (648)
228 PRK01178 rps24e 30S ribosomal 23.3 3.3E+02 0.0073 24.7 6.9 52 592-654 29-80 (99)
229 KOG4410 5-formyltetrahydrofola 21.8 1E+02 0.0022 32.9 3.8 48 217-269 331-378 (396)
230 PF10567 Nab6_mRNP_bdg: RNA-re 21.4 1.1E+02 0.0024 33.1 4.0 83 212-294 11-106 (309)
231 KOG2891 Surface glycoprotein [ 21.2 1.1E+02 0.0024 32.4 3.9 34 431-464 150-195 (445)
232 PF03468 XS: XS domain; Inter 20.8 82 0.0018 29.4 2.7 49 218-269 10-67 (116)
233 PTZ00071 40S ribosomal protein 20.4 3.6E+02 0.0077 25.9 6.7 51 593-654 35-86 (132)
No 1
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.4e-64 Score=542.72 Aligned_cols=508 Identities=39% Similarity=0.573 Sum_probs=385.4
Q ss_pred cEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 002709 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (890)
Q Consensus 122 rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~ 201 (890)
.||||++||++++.++|.++|+.+|+|..|.++.++. ++.++|||||.|.-.+|++.|++.+++..|.|+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~g---------s~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~ 76 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKG---------SSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRI 76 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCC---------cccccCccceeeehHhHHHHHHHHhhcCccccee
Confidence 7999999999999999999999999999999987763 6778999999999999999999999999999999
Q ss_pred EEEecCCCC------------------------CC--CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCC
Q 002709 202 VWARQLGGE------------------------GS--KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG 255 (890)
Q Consensus 202 i~v~~~~~~------------------------~~--~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g 255 (890)
|.+.+.... .. ....++|+|+|||+.+...+|..+|+.||.|+.|.||+... |
T Consensus 77 l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-g 155 (678)
T KOG0127|consen 77 LNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-G 155 (678)
T ss_pred cccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-C
Confidence 987442100 01 22368999999999999999999999999999999998765 5
Q ss_pred CcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCc--
Q 002709 256 LSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDD-- 333 (890)
Q Consensus 256 ~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 333 (890)
+-.|||||+|....+|..||+.+|+..|.|++|.|+||.++..|......... ..........+.+. +++.+++
T Consensus 156 klcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~---s~Kk~~~eEed~e~-~~d~~~~~~ 231 (678)
T KOG0127|consen 156 KLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQ---SLKKAVKEEEDKEA-DEDDGKDFD 231 (678)
T ss_pred CccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhh---hhhhccchhhhccc-ccccccccc
Confidence 55599999999999999999999999999999999999999988765433200 00000000000000 0000000
Q ss_pred -ccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhcccccccccccccc
Q 002709 334 -AETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNS 412 (890)
Q Consensus 334 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~ 412 (890)
.++..+ ....+..+..+. .+. .+.....++...++.+ .++..
T Consensus 232 ~Ed~e~d-~edeEe~D~~se-~~e------------------------------e~~~~Eee~~~vDd~e-~S~~~---- 274 (678)
T KOG0127|consen 232 EEDGEED-SEDEEETDGNSE-AFE------------------------------EGEESEEEEDDVDDEE-SSGKK---- 274 (678)
T ss_pred hhccccc-ccccccccccch-hhh------------------------------cccccccccccccccc-ccccC----
Confidence 000101 110010000000 000 0000000000000000 01110
Q ss_pred CCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHh
Q 002709 413 SKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 492 (890)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~l 492 (890)
........+....+...+.+|||+|||+++|+++|.++|++||.|.++.|+.++.|+.+.|+|||.|.+..+|+.||.+.
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 00000111112335667899999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCC-eeecCeEEEEEEccChhhhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhh
Q 002709 493 KTTSGLG-IFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMT 571 (890)
Q Consensus 493 n~~~~~g-~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~ 571 (890)
..+++.| +.|+||.|.|..|..+..+.+.+..+......+++||||..+|.|.+++|++.++|..||..|....+.+..
T Consensus 355 spa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k 434 (678)
T KOG0127|consen 355 SPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRK 434 (678)
T ss_pred CccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHH
Confidence 6666666 999999999999999999999888888888899999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHH
Q 002709 572 KLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQH 651 (890)
Q Consensus 572 ~~~~p~~~~s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~ 651 (890)
.+.+|++|+|.|+|.|+|||..++...|..|...+++.++++.-..|..+..+.... .+.+.||+||.|..|++
T Consensus 435 ~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~------k~~s~g~aF~~f~EhEh 508 (678)
T KOG0127|consen 435 KLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEK------KNYSEGYAFVGFTEHEH 508 (678)
T ss_pred hhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhh------hcccccccccCccHHHH
Confidence 999999999999999999999999999999999999988776444344333333222 34789999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCccEEEEecccHHHHHHHHHHHHHHHh
Q 002709 652 ALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLKQRNAKIQAQQQ 696 (890)
Q Consensus 652 A~~Al~~Lng~~~~~g~~~rliV~~A~e~~~~~~~r~~~~q~~~~ 696 (890)
|+.|++.+ |.-++++|+|+.+++ ..++.+.|..+|
T Consensus 509 alkalk~~-------G~lkq~~Vefev~~~---k~~~sk~q~f~q 543 (678)
T KOG0127|consen 509 ALKALKVL-------GVLKQAKVEFEVDGV---KAGRSKGQGFQQ 543 (678)
T ss_pred HHHhhhcc-------cccccceEEEEeccc---hhhhhhhhhHHH
Confidence 99999887 334899999999886 344444444444
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.7e-49 Score=467.60 Aligned_cols=369 Identities=21% Similarity=0.307 Sum_probs=304.1
Q ss_pred EEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 002709 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (890)
Q Consensus 123 tv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i 202 (890)
+|||+|||.++++++|+++|+.||.|.+|++++++. +++++|||||+|.+.++|.+|+..|++..|.|+.|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~---------t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i 72 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV---------TRRSLGYGYVNFQNPADAERALETMNFKRLGGKPI 72 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeE
Confidence 799999999999999999999999999999988863 78999999999999999999999999999999999
Q ss_pred EEecCCCC--CCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 002709 203 WARQLGGE--GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (890)
Q Consensus 203 ~v~~~~~~--~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng 280 (890)
+|...... .......+|||+|||.++++++|+++|+.||.|.+|.|..+. +|+++|||||+|.+.++|..|+..|||
T Consensus 73 ~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng 151 (562)
T TIGR01628 73 RIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNG 151 (562)
T ss_pred EeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcc
Confidence 98654322 223345689999999999999999999999999999999875 688999999999999999999999999
Q ss_pred ceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHH
Q 002709 281 QKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVD 360 (890)
Q Consensus 281 ~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (890)
..+.|+.|.|.+..++.....
T Consensus 152 ~~~~~~~i~v~~~~~~~~~~~----------------------------------------------------------- 172 (562)
T TIGR01628 152 MLLNDKEVYVGRFIKKHEREA----------------------------------------------------------- 172 (562)
T ss_pred cEecCceEEEecccccccccc-----------------------------------------------------------
Confidence 999999999976643321000
Q ss_pred HHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCC
Q 002709 361 IARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPF 440 (890)
Q Consensus 361 ~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~ 440 (890)
......++|||+|||.
T Consensus 173 ----------------------------------------------------------------~~~~~~~~l~V~nl~~ 188 (562)
T TIGR01628 173 ----------------------------------------------------------------APLKKFTNLYVKNLDP 188 (562)
T ss_pred ----------------------------------------------------------------ccccCCCeEEEeCCCC
Confidence 0001136899999999
Q ss_pred CCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeec----CeEEEEEEccChh
Q 002709 441 DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK----GRQLTVLKALDKK 516 (890)
Q Consensus 441 ~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~----Gr~l~V~~a~~k~ 516 (890)
++|+++|+++|+.||.|.++.++.+. ++.++|||||.|.+.++|.+|++.|+ |..+. |+.|.|.++..+.
T Consensus 189 ~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~-----g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 189 SVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMN-----GKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC-----CcEecccccceeeEeecccChh
Confidence 99999999999999999999988875 78899999999999999999999999 99999 9999999987664
Q ss_pred hhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCccCeEEEeCCCCCCCH
Q 002709 517 LAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTE 596 (890)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~~te 596 (890)
.... ..... ........ ......++|||+|||..+|+
T Consensus 263 er~~-~~~~~--------------------------------------~~~~~~~~----~~~~~~~~l~V~nl~~~~~~ 299 (562)
T TIGR01628 263 EREA-ELRRK--------------------------------------FEELQQER----KMKAQGVNLYVKNLDDTVTD 299 (562)
T ss_pred hhHH-HHHhh--------------------------------------HHhhhhhh----hcccCCCEEEEeCCCCccCH
Confidence 3211 00000 00000000 00113468999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccEEEE
Q 002709 597 KGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEF 676 (890)
Q Consensus 597 eeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~~~~~g~~~rliV~~ 676 (890)
++|+++|+ .||.|.+|+|++| .+ +.++|||||+|.++++|.+|+..|||. +|+ ++.|.|.|
T Consensus 300 ~~L~~~F~---------~~G~i~~~~i~~d-~~------g~~~g~gfV~f~~~~~A~~A~~~~~g~--~~~-gk~l~V~~ 360 (562)
T TIGR01628 300 EKLRELFS---------ECGEITSAKVMLD-EK------GVSRGFGFVCFSNPEEANRAVTEMHGR--MLG-GKPLYVAL 360 (562)
T ss_pred HHHHHHHH---------hcCCeEEEEEEEC-CC------CCcCCeEEEEeCCHHHHHHHHHHhcCC--eeC-CceeEEEe
Confidence 99999999 4999999999998 33 489999999999999999999999995 555 47778999
Q ss_pred ecccHHHHHHHHHHHHHHHh
Q 002709 677 AVDNVQTLKQRNAKIQAQQQ 696 (890)
Q Consensus 677 A~e~~~~~~~r~~~~q~~~~ 696 (890)
|. ....+++..+.+++
T Consensus 361 a~----~k~~~~~~~~~~~~ 376 (562)
T TIGR01628 361 AQ----RKEQRRAHLQDQFM 376 (562)
T ss_pred cc----CcHHHHHHHHHHHH
Confidence 94 44555555555544
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=7.9e-44 Score=414.02 Aligned_cols=444 Identities=17% Similarity=0.205 Sum_probs=282.6
Q ss_pred CcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHh--CCceec
Q 002709 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALL--HQKEIK 198 (890)
Q Consensus 121 ~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~l--n~~~i~ 198 (890)
+++|||+|||+++++++|+++|+.||.|.+|.++. +++||||+|.+.++|..|+..+ ++..|.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---------------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~ 66 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---------------GKRQALVEFEDEESAKACVNFATSVPIYIR 66 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---------------CCCEEEEEeCchHHHHHHHHHhhcCCceEc
Confidence 68999999999999999999999999999999853 3479999999999999999974 789999
Q ss_pred CeEEEEecCCCCC------------CCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEec
Q 002709 199 GGTVWARQLGGEG------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 266 (890)
Q Consensus 199 g~~i~v~~~~~~~------------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~ 266 (890)
|+.|+|....... ......+|||+||++.+|+++|+++|+.||.|.+|.|.++. .+++|||+|.
T Consensus 67 g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~ 142 (481)
T TIGR01649 67 GQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFE 142 (481)
T ss_pred CeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEEC
Confidence 9999996542110 11123479999999999999999999999999999998753 3479999999
Q ss_pred CHHHHHHHHHHhCCceeCC--eeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCc
Q 002709 267 CKRDAESAIQKFNGQKFGK--RPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSS 344 (890)
Q Consensus 267 ~~e~A~~Al~~lng~~l~g--~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (890)
+.++|.+|+..|||..|.| +.|+|.|+.+........... ..+... . ...+..+.....
T Consensus 143 ~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~-------------s~dyt~-----~-~l~~~~~~~~~~ 203 (481)
T TIGR01649 143 SVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDD-------------SRDYTN-----P-DLPGRRDPGLDQ 203 (481)
T ss_pred CHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccC-------------CCCCcC-----C-CCCCCCCCCcCc
Confidence 9999999999999999954 589999998765543222111 000000 0 000000000000
Q ss_pred cccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCc--------hhhccCCCCCCCchhhccccccccccccccCCCC
Q 002709 345 EKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDD--------SALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSK 416 (890)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~ 416 (890)
. .. ..+. .+.......|........ .....+....... ............
T Consensus 204 ~--~~---~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 261 (481)
T TIGR01649 204 T--HR---QRQP--------ALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPS---------RYRPAYEAAPLA 261 (481)
T ss_pred c--cc---cccc--------ccccCCCccCCCcccccCCCCCCcccccccCCCcccCCC---------CCcccccccccC
Confidence 0 00 0000 000000000000000000 0000000000000 000000000000
Q ss_pred CCcccccCCCCCCCCeEEEcCCCC-CCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccC
Q 002709 417 PKSLKQTEGEDELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTT 495 (890)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~V~NLp~-~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~ 495 (890)
++..........++++|||+|||+ .+|+++|+++|+.||.|..|+|+++. +|||||+|.+.++|..|+..||
T Consensus 262 ~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~ln-- 334 (481)
T TIGR01649 262 PAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLN-- 334 (481)
T ss_pred ccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC--
Confidence 000001111234678999999998 69999999999999999999998763 7999999999999999999999
Q ss_pred CCCCeeecCeEEEEEEccChhhhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCC
Q 002709 496 SGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQS 575 (890)
Q Consensus 496 ~~~g~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~ 575 (890)
|..|.|++|.|.++........ .++....+.+.....+..... |. ......+
T Consensus 335 ---g~~l~g~~l~v~~s~~~~~~~~-------------------~~~~~~~~~~~~~d~~~~~~~-r~-----~~~~~~~ 386 (481)
T TIGR01649 335 ---GVKLFGKPLRVCPSKQQNVQPP-------------------REGQLDDGLTSYKDYSSSRNH-RF-----KKPGSAN 386 (481)
T ss_pred ---CCEECCceEEEEEcccccccCC-------------------CCCcCcCCCcccccccCCccc-cC-----CCccccc
Confidence 9999999999999754321100 000000000000000000000 00 0000000
Q ss_pred -CCCCCccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCC--eEEEEEeecccCCccCCCCCcceEEEEEeCCHHHH
Q 002709 576 -PNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPV--IKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHA 652 (890)
Q Consensus 576 -p~~~~s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~--I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A 652 (890)
.....+..+|||.|||.++|+++|+++|+. ||. |..|+++... +..+|+|||+|.+.++|
T Consensus 387 ~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~---------~G~~~i~~ik~~~~~--------~~~~~~gfVeF~~~e~A 449 (481)
T TIGR01649 387 KNNIQPPSATLHLSNIPLSVSEEDLKELFAE---------NGVHKVKKFKFFPKD--------NERSKMGLLEWESVEDA 449 (481)
T ss_pred ccccCCCCcEEEEecCCCCCCHHHHHHHHHh---------cCCccceEEEEecCC--------CCcceeEEEEcCCHHHH
Confidence 011234578999999999999999999995 897 8888887532 12579999999999999
Q ss_pred HHHHHHhcCCCCCCCCCC-----ccEEEEec
Q 002709 653 LVALRVLNNNPKTFGPEH-----RPIVEFAV 678 (890)
Q Consensus 653 ~~Al~~Lng~~~~~g~~~-----rliV~~A~ 678 (890)
..||..|||. .++... .|.|.||.
T Consensus 450 ~~Al~~ln~~--~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 450 VEALIALNHH--QLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred HHHHHHhcCC--ccCCCCCCccceEEEEecc
Confidence 9999999996 334211 35688883
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.1e-44 Score=429.00 Aligned_cols=327 Identities=22% Similarity=0.332 Sum_probs=273.9
Q ss_pred CcccCCCCCccceEEEEecCHHHHHHHHHhhCCceeCCeeeEEeecccchhHHhhhhhhchhhhhhhhhhcccCCCCccc
Q 002709 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVIS 80 (890)
Q Consensus 1 iv~dk~tg~srG~AfV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~r~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (890)
|++|+.|++++|||||+|.+.+||++||+.+|+..|.|++|+|.|+...+.
T Consensus 32 v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~----------------------------- 82 (562)
T TIGR01628 32 VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPS----------------------------- 82 (562)
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccc-----------------------------
Confidence 467889999999999999999999999999999999999999999942110
Q ss_pred cccccchhhhhcccCCCCcccccccccccCccccccccCCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhh
Q 002709 81 GAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEEL 160 (890)
Q Consensus 81 ~~~~~~~~~~e~~~~~~~~k~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~ 160 (890)
.......+|||+|||.++++++|+++|+.||.|.+|+++.+.
T Consensus 83 -----------------------------------~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~--- 124 (562)
T TIGR01628 83 -----------------------------------LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE--- 124 (562)
T ss_pred -----------------------------------ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC---
Confidence 001124579999999999999999999999999999997764
Q ss_pred hhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEecCCCC-----CCCCCCcEEEEccCCCCCCHHHHHH
Q 002709 161 EQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGE-----GSKTQKWKLIIRNIPFKAKVNEIKD 235 (890)
Q Consensus 161 ~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v~~~~~~-----~~~~~~~~l~V~nLp~~~te~~L~~ 235 (890)
+|.++|||||+|.+.++|..|+..|++..+.|+.|.+...... ......++|||+|||.++|+++|++
T Consensus 125 -------~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~ 197 (562)
T TIGR01628 125 -------NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRE 197 (562)
T ss_pred -------CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHH
Confidence 5889999999999999999999999999999999988543211 1234457899999999999999999
Q ss_pred hhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC----CeeEEEEeecCCCCcCCCCCCCCcccc
Q 002709 236 MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG----KRPIAVDWAVPKNIYSSGGAAAGAYED 311 (890)
Q Consensus 236 ~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~----g~~I~V~~a~pk~~~~~~~~~~~~~~~ 311 (890)
+|+.||.|.++.+..+. +|.++|||||.|.+.++|.+|+..|+|..|. |+.|.|.++.++.....
T Consensus 198 ~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~---------- 266 (562)
T TIGR01628 198 LFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREA---------- 266 (562)
T ss_pred HHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHH----------
Confidence 99999999999999875 6889999999999999999999999999999 99999998754421000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCC
Q 002709 312 GVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKE 391 (890)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~ 391 (890)
.....+.....
T Consensus 267 -------------------------------------------------~~~~~~~~~~~-------------------- 277 (562)
T TIGR01628 267 -------------------------------------------------ELRRKFEELQQ-------------------- 277 (562)
T ss_pred -------------------------------------------------HHHhhHHhhhh--------------------
Confidence 00000000000
Q ss_pred CCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCC
Q 002709 392 QDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRP 471 (890)
Q Consensus 392 ~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~ 471 (890)
.......+++|||+|||..+|+++|+++|+.||.|.+|+++.+ .+|.+
T Consensus 278 -------------------------------~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~ 325 (562)
T TIGR01628 278 -------------------------------ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVS 325 (562)
T ss_pred -------------------------------hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCc
Confidence 0001123578999999999999999999999999999999998 58999
Q ss_pred CceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhh
Q 002709 472 KGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 518 (890)
Q Consensus 472 ~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~ 518 (890)
+|||||+|.+.++|.+|+..|| |..|+|++|.|.+|..+...
T Consensus 326 ~g~gfV~f~~~~~A~~A~~~~~-----g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 326 RGFGFVCFSNPEEANRAVTEMH-----GRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CCeEEEEeCCHHHHHHHHHHhc-----CCeeCCceeEEEeccCcHHH
Confidence 9999999999999999999999 99999999999999877544
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=5.4e-40 Score=369.34 Aligned_cols=345 Identities=22% Similarity=0.253 Sum_probs=237.9
Q ss_pred CcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 002709 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (890)
Q Consensus 121 ~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~ 200 (890)
..+|||+|||..+++++|+++|+.||+|.+|++++++. +|.++|||||+|.+.++|.+||..|+|..|.|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~---------~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~ 73 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKV---------TGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK 73 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCC---------CCccceEEEEEECcHHHHHHHHhhcccEEECCe
Confidence 46899999999999999999999999999999998874 789999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 002709 201 TVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (890)
Q Consensus 201 ~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng 280 (890)
.|.|.............+|||+|||..+++++|+.+|+.||.|..+.++.+..++.++|||||+|.+.++|..|+..|||
T Consensus 74 ~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 74 TIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred eEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 99997665544455677999999999999999999999999999999999887889999999999999999999999999
Q ss_pred ceeCC--eeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhH
Q 002709 281 QKFGK--RPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEE 358 (890)
Q Consensus 281 ~~l~g--~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (890)
..+.| .+|.|.|+............................... .............. ...+....+ .
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~--~ 223 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTI-------LTAAGIGPMHHAAA-RFRPSAGDF--T 223 (352)
T ss_pred CccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCcccc-------ccccCCCCccCccc-ccccCcchh--h
Confidence 99876 678888886543211100000000000000000000000 00000000000000 000000000 0
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCC-cccccCCCCCCCCeEEEcC
Q 002709 359 VDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPK-SLKQTEGEDELQNTIFICN 437 (890)
Q Consensus 359 ~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~l~V~N 437 (890)
........ .++.+........ . .+......... ...........+.+|||+|
T Consensus 224 ~~~~~~~~------~~~~~~~~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~N 276 (352)
T TIGR01661 224 AVLAHQQQ------QHAVAQQHAAQRA--S-------------------PPATDGQTAGLAAGAQIAASDGAGYCIFVYN 276 (352)
T ss_pred hhhhhhhh------hcccccccccccC--C-------------------CccccccccccccCCCCCCCCCCCcEEEEeC
Confidence 00000000 0000000000000 0 00000000000 0000001234456899999
Q ss_pred CCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChh
Q 002709 438 LPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 516 (890)
Q Consensus 438 Lp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~ 516 (890)
||+++++++|+++|++||.|.+|+|+.+..++.++|||||.|.+.++|.+||..|| |..|+|+.|.|.|+.++.
T Consensus 277 L~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ln-----G~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 277 LSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLN-----GYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhC-----CCEECCeEEEEEEccCCC
Confidence 99999999999999999999999999999999999999999999999999999999 999999999999988764
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6.7e-40 Score=368.60 Aligned_cols=312 Identities=23% Similarity=0.349 Sum_probs=228.8
Q ss_pred CcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002709 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (890)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~p 295 (890)
.++|||+|||..+++++|+++|+.||.|.+|.|+++..+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 57999999999999999999999999999999999998999999999999999999999999999999999999999865
Q ss_pred CCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCC
Q 002709 296 KNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGS 375 (890)
Q Consensus 296 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 375 (890)
...
T Consensus 83 ~~~----------------------------------------------------------------------------- 85 (352)
T TIGR01661 83 SSD----------------------------------------------------------------------------- 85 (352)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 320
Q ss_pred CCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCC
Q 002709 376 LPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 455 (890)
Q Consensus 376 ~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG 455 (890)
....++|||+|||..+++++|+.+|+.||
T Consensus 86 ---------------------------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G 114 (352)
T TIGR01661 86 ---------------------------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFG 114 (352)
T ss_pred ---------------------------------------------------ccccceEEECCccccCCHHHHHHHHhccC
Confidence 00135899999999999999999999999
Q ss_pred CeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecC--eEEEEEEccChhhhchhhhhhh---cccc
Q 002709 456 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKKLAHDKEIDKS---KNET 530 (890)
Q Consensus 456 ~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~G--r~l~V~~a~~k~~~~~~~~~~~---~~~~ 530 (890)
.|..+.++.+..++.++|||||+|.+.++|..|+..|| |..+.| ++|.|.|+.............. ....
T Consensus 115 ~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~-----g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~ 189 (352)
T TIGR01661 115 QIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN-----GTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNP 189 (352)
T ss_pred CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC-----CCccCCCceeEEEEECCCCCcCCchhcCchhhcccCc
Confidence 99999999988888999999999999999999999999 888876 6789999875542211111100 0000
Q ss_pred cccc-chh-hhccccccCCCCCCCCCChhhHHHHHHH----HHHhh----------------------hccCCCCCCCcc
Q 002709 531 NDHR-NLY-LAKEGLILEGTPAAEGVSDDDMSKRQML----HEKKM----------------------TKLQSPNFHVSR 582 (890)
Q Consensus 531 ~~~~-~l~-l~~eg~~~~~~p~a~~~s~~~~~~r~~~----~~~~~----------------------~~~~~p~~~~s~ 582 (890)
...+ .+- +...+...+................... ..... .....+.....+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (352)
T TIGR01661 190 QTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAG 269 (352)
T ss_pred ccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCC
Confidence 0000 000 0000000000000000000000000000 00000 000001101123
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 002709 583 TRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 662 (890)
Q Consensus 583 ~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~ 662 (890)
.+|||+|||+++++++|+++|+ +||.|.+|+|++|..++ .++|||||+|.++++|..||.+|||.
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~---------~fG~v~~v~i~~d~~t~------~skG~aFV~F~~~~~A~~Ai~~lnG~ 334 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFG---------PFGAVQNVKIIRDLTTN------QCKGYGFVSMTNYDEAAMAILSLNGY 334 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHH---------hCCCeEEEEEeEcCCCC------CccceEEEEECCHHHHHHHHHHhCCC
Confidence 3799999999999999999999 59999999999998776 89999999999999999999999996
Q ss_pred CCCCCCCCccEEEEec
Q 002709 663 PKTFGPEHRPIVEFAV 678 (890)
Q Consensus 663 ~~~~g~~~rliV~~A~ 678 (890)
.|+ +++|.|.|+.
T Consensus 335 --~~~-gr~i~V~~~~ 347 (352)
T TIGR01661 335 --TLG-NRVLQVSFKT 347 (352)
T ss_pred --EEC-CeEEEEEEcc
Confidence 444 3777799984
No 7
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-39 Score=354.15 Aligned_cols=359 Identities=23% Similarity=0.308 Sum_probs=294.9
Q ss_pred EEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 002709 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (890)
Q Consensus 123 tv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i 202 (890)
.|||| +++|+..|+++|+.+|+|+++++.++ . + +.|||||.|.++++|.+|+.+||...|.|+.|
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d----------~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ 67 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRD----------A-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPI 67 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeec----------C-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEE
Confidence 58999 99999999999999999999999766 2 4 99999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q 002709 203 WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (890)
Q Consensus 203 ~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~ 282 (890)
++.++.... ..|||+||+.+++...|.++|+.||.|++|++..+.. | ++|| ||+|.++++|.+|+..|||..
T Consensus 68 rim~s~rd~-----~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 68 RIMWSQRDP-----SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred EeehhccCC-----ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 998754332 2399999999999999999999999999999999864 5 9999 999999999999999999999
Q ss_pred eCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHH
Q 002709 283 FGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIA 362 (890)
Q Consensus 283 l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (890)
+.|+.|.|....++.........
T Consensus 140 l~~kki~vg~~~~~~er~~~~~~--------------------------------------------------------- 162 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAPLGE--------------------------------------------------------- 162 (369)
T ss_pred cCCCeeEEeeccchhhhcccccc---------------------------------------------------------
Confidence 99999999987654321110000
Q ss_pred HHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCC
Q 002709 363 RKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL 442 (890)
Q Consensus 363 ~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~ 442 (890)
....-+++||.|++.++
T Consensus 163 ---------------------------------------------------------------~~~~~t~v~vk~~~~~~ 179 (369)
T KOG0123|consen 163 ---------------------------------------------------------------YKKRFTNVYVKNLEEDS 179 (369)
T ss_pred ---------------------------------------------------------------hhhhhhhhheecccccc
Confidence 00012589999999999
Q ss_pred CHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhh
Q 002709 443 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKE 522 (890)
Q Consensus 443 tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~~~~~ 522 (890)
+++.|.++|..||.|.++.++.+. .+.++||+||.|.++++|..|+..|+ +..+++..+.|..+..+.+... .
T Consensus 180 ~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~-----~~~~~~~~~~V~~aqkk~e~~~-~ 252 (369)
T KOG0123|consen 180 TDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLN-----GKIFGDKELYVGRAQKKSEREA-E 252 (369)
T ss_pred chHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhcc-----CCcCCccceeecccccchhhHH-H
Confidence 999999999999999999988875 66699999999999999999999999 8999999999999876432210 0
Q ss_pred hhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCccCeEEEeCCCCCCCHHHHHHH
Q 002709 523 IDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKL 602 (890)
Q Consensus 523 ~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~~teeeL~~l 602 (890)
..+ ....... .+.......+|||.||+..++.+.|+++
T Consensus 253 -------------------------------------l~~-~~~~~~~----~~~~~~~~~nl~vknld~~~~~e~L~~~ 290 (369)
T KOG0123|consen 253 -------------------------------------LKR-KFEQEFA----KRSVSLQGANLYVKNLDETLSDEKLRKI 290 (369)
T ss_pred -------------------------------------Hhh-hhHhhhh----hccccccccccccccCccccchhHHHHH
Confidence 000 0000000 0111223467999999999999999999
Q ss_pred HHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccEEEEecccHH
Q 002709 603 CIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQ 682 (890)
Q Consensus 603 F~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~~~~~g~~~rliV~~A~e~~~ 682 (890)
|+. ||.|.+++|+.+. .+.++|||||+|.+.++|..|+..+|+. +.+ ++.+.|.++ +
T Consensus 291 f~~---------~GeI~s~kv~~~~-------~g~skG~gfV~fs~~eeA~~A~~~~n~~--~i~-~k~l~vav~----q 347 (369)
T KOG0123|consen 291 FSS---------FGEITSAKVMVDE-------NGKSKGFGFVEFSSPEEAKKAMTEMNGR--LIG-GKPLYVAVA----Q 347 (369)
T ss_pred Hhc---------ccceeeEEEEecc-------CCCccceEEEEcCCHHHHHHHHHhhChh--hhc-CCchhhhHH----h
Confidence 994 9999999999874 4689999999999999999999999995 444 255669988 5
Q ss_pred HHHHHHHHHHHHHh
Q 002709 683 TLKQRNAKIQAQQQ 696 (890)
Q Consensus 683 ~~~~r~~~~q~~~~ 696 (890)
+.+.+.++++.+++
T Consensus 348 r~~~r~~~~~~~~~ 361 (369)
T KOG0123|consen 348 RKEDRRARLQAVFG 361 (369)
T ss_pred hhccchhhhhhhcc
Confidence 66777777766655
No 8
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=7.7e-39 Score=357.63 Aligned_cols=319 Identities=24% Similarity=0.401 Sum_probs=223.4
Q ss_pred CcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002709 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (890)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~p 295 (890)
.+.|+|+|||..+..++|..+|..||.|..+.++. .| --|+|.|.++.+|..|+..|.+..+...++++.|+ |
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a-P 457 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA-P 457 (725)
T ss_pred cceeeeccCccccccHHHHHHhhcccccceeecCc---cc---ceeeeeecCccchHHHHHHhchhhhccCccccccC-h
Confidence 46899999999999999999999999999996663 22 23999999999999999999999999999999998 6
Q ss_pred CCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCC
Q 002709 296 KNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGS 375 (890)
Q Consensus 296 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 375 (890)
...+........ .. .......+.. .....+.
T Consensus 458 ~dvf~~~pka~~----------~~--~e~~~~~ee~-~~Er~s~------------------------------------ 488 (725)
T KOG0110|consen 458 EDVFTEDPKADD----------LS--AESRSKMEEN-PSERVSA------------------------------------ 488 (725)
T ss_pred hhhccCCccccc----------cc--cccccccccC-cceeccc------------------------------------
Confidence 555543210000 00 0000000000 0000000
Q ss_pred CCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCC
Q 002709 376 LPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 455 (890)
Q Consensus 376 ~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG 455 (890)
..+....+.+.++.. .+. ... ......+.|||+||++++|.++|..+|..+|
T Consensus 489 ----------~d~~v~eD~d~te~s--s~a---------------~~a-~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G 540 (725)
T KOG0110|consen 489 ----------EDGQVEEDKDPTEES--SLA---------------RVA-EDEETETKLFVKNLNFDTTLEDLEDLFSKQG 540 (725)
T ss_pred ----------ccccccccCCccccc--cch---------------hhh-hccccchhhhhhcCCcccchhHHHHHHHhcC
Confidence 000000000000000 000 000 0001113399999999999999999999999
Q ss_pred CeEEEEEeecCCCC---CCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhcccccc
Q 002709 456 EVVSFVPVLHQVTK---RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETND 532 (890)
Q Consensus 456 ~I~~v~i~~~~~~g---~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~~~~~ 532 (890)
.|.++.|...+... .+.|||||+|.+.++|+.|+..|+ |..|+|+.|.|.++..+.....- +
T Consensus 541 ~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq-----gtvldGH~l~lk~S~~k~~~~~g---K------- 605 (725)
T KOG0110|consen 541 TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ-----GTVLDGHKLELKISENKPASTVG---K------- 605 (725)
T ss_pred eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhc-----CceecCceEEEEeccCccccccc---c-------
Confidence 99999877654221 256999999999999999999999 99999999999998733221100 0
Q ss_pred ccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhc
Q 002709 533 HRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRAS 612 (890)
Q Consensus 533 ~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~ 612 (890)
...... ..+.|+|+|||+.++..+|+.+|.
T Consensus 606 --------------------------------------~~~~kk----~~tKIlVRNipFeAt~rEVr~LF~-------- 635 (725)
T KOG0110|consen 606 --------------------------------------KKSKKK----KGTKILVRNIPFEATKREVRKLFT-------- 635 (725)
T ss_pred --------------------------------------cccccc----ccceeeeeccchHHHHHHHHHHHh--------
Confidence 000000 147899999999999999999999
Q ss_pred cCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccEEEEecccHHHHHHHHHHHH
Q 002709 613 KQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLKQRNAKIQ 692 (890)
Q Consensus 613 ~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~~~~~g~~~rliV~~A~e~~~~~~~r~~~~q 692 (890)
+||.|.+|+|+.... ..-++|||||+|.++.+|.+|+.+|. .+|+|| +||+++||..+.. ++.-+.+-.
T Consensus 636 -aFGqlksvRlPKK~~------k~a~rGF~Fv~f~t~~ea~nA~~al~-STHlyG--RrLVLEwA~~d~~-~e~~r~r~A 704 (725)
T KOG0110|consen 636 -AFGQLKSVRLPKKIG------KGAHRGFGFVDFLTPREAKNAFDALG-STHLYG--RRLVLEWAKSDNT-MEALRERTA 704 (725)
T ss_pred -cccceeeeccchhhc------chhhccceeeeccCcHHHHHHHHhhc-ccceec--hhhheehhccchH-HHHHHHHHH
Confidence 699999999997532 34789999999999999999999999 469999 9999999988766 444444443
Q ss_pred HH
Q 002709 693 AQ 694 (890)
Q Consensus 693 ~~ 694 (890)
+.
T Consensus 705 ak 706 (725)
T KOG0110|consen 705 AK 706 (725)
T ss_pred HH
Confidence 33
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.7e-36 Score=352.65 Aligned_cols=336 Identities=19% Similarity=0.209 Sum_probs=242.7
Q ss_pred ccceEEEEecCHHHHHHHHHh--hCCceeCCeeeEEeecccchhHHhhhhhhchhhhhhhhhhcccCCCCccccccccch
Q 002709 10 HRGFGYVQFAVMEDANRAVEM--KNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSS 87 (890)
Q Consensus 10 srG~AfV~F~~~edA~~Al~~--lng~~i~Gr~I~V~~a~~r~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (890)
++|||||+|.+.++|.+|++. +++..|.|++|+|.++.++... +. .+ .
T Consensus 37 ~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~--~~---~~-------------~------------ 86 (481)
T TIGR01649 37 GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK--RD---GN-------------S------------ 86 (481)
T ss_pred CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc--cC---CC-------------C------------
Confidence 679999999999999999997 4789999999999999533200 00 00 0
Q ss_pred hhhhcccCCCCcccccccccccCccccccccCCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccC
Q 002709 88 KLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQ 167 (890)
Q Consensus 88 ~~~e~~~~~~~~k~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~ 167 (890)
+ . .........+|||+||++.+++++|+++|+.||.|.+|.++.+.
T Consensus 87 -------------------~-~----~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---------- 132 (481)
T TIGR01649 87 -------------------D-F----DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---------- 132 (481)
T ss_pred -------------------c-c----cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----------
Confidence 0 0 00001134579999999999999999999999999999986542
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHhCCceecCe--EEEEecCCC----------C----------C--------------
Q 002709 168 EGCKMDASAVLYTTVKSACASVALLHQKEIKGG--TVWARQLGG----------E----------G-------------- 211 (890)
Q Consensus 168 ~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~--~i~v~~~~~----------~----------~-------------- 211 (890)
..++|||+|.+.++|.+|+..|||..|.|. .|.|..... . +
T Consensus 133 ---~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~ 209 (481)
T TIGR01649 133 ---NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQ 209 (481)
T ss_pred ---CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccc
Confidence 236899999999999999999999999764 333211000 0 0
Q ss_pred -------------------------------------------------------------CCCCCcEEEEccCCC-CCC
Q 002709 212 -------------------------------------------------------------SKTQKWKLIIRNIPF-KAK 229 (890)
Q Consensus 212 -------------------------------------------------------------~~~~~~~l~V~nLp~-~~t 229 (890)
.....++|||+|||+ .+|
T Consensus 210 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt 289 (481)
T TIGR01649 210 PALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVN 289 (481)
T ss_pred cccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCC
Confidence 011456999999998 699
Q ss_pred HHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCcCCCCCCCCcc
Q 002709 230 VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAY 309 (890)
Q Consensus 230 e~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk~~~~~~~~~~~~~ 309 (890)
+++|+++|+.||.|.+|+|+.+ .+|||||+|.+.++|..||..|||..|.|++|.|.++............
T Consensus 290 ~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~---- 360 (481)
T TIGR01649 290 CDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQ---- 360 (481)
T ss_pred HHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCc----
Confidence 9999999999999999999885 4689999999999999999999999999999999998644321110000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCC
Q 002709 310 EDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGN 389 (890)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~ 389 (890)
.++.. ....++.... ... ..
T Consensus 361 -----------~~~~~------------------------~~~~d~~~~~------~~r-~~------------------ 380 (481)
T TIGR01649 361 -----------LDDGL------------------------TSYKDYSSSR------NHR-FK------------------ 380 (481)
T ss_pred -----------CcCCC------------------------cccccccCCc------ccc-CC------------------
Confidence 00000 0000000000 000 00
Q ss_pred CCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCCC--eEEEEEeecCC
Q 002709 390 KEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE--VVSFVPVLHQV 467 (890)
Q Consensus 390 ~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~--I~~v~i~~~~~ 467 (890)
.+.. .....-..++.+|||+|||..+|+++|+++|+.||. |..|++....
T Consensus 381 ------------------~~~~---------~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~- 432 (481)
T TIGR01649 381 ------------------KPGS---------ANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD- 432 (481)
T ss_pred ------------------Cccc---------ccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-
Confidence 0000 000001234679999999999999999999999998 7888775433
Q ss_pred CCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeE------EEEEEccCh
Q 002709 468 TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ------LTVLKALDK 515 (890)
Q Consensus 468 ~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~------l~V~~a~~k 515 (890)
++ .+++|||+|.+.++|..|+..|| +..|.|+. |.|.++.++
T Consensus 433 ~~-~~~~gfVeF~~~e~A~~Al~~ln-----~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 433 NE-RSKMGLLEWESVEDAVEALIALN-----HHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CC-cceeEEEEcCCHHHHHHHHHHhc-----CCccCCCCCCccceEEEEeccCC
Confidence 33 58999999999999999999999 99999985 999987653
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1e-36 Score=351.07 Aligned_cols=301 Identities=21% Similarity=0.237 Sum_probs=233.4
Q ss_pred CCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceec-
Q 002709 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK- 198 (890)
Q Consensus 120 ~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~- 198 (890)
..++|||+|||.++++++|+++|+.||.|.+|+|+++. +|.++|||||+|.+.++|..||+.||+..|.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~----------sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~ 126 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF----------SGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP 126 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC----------CCCccceEEEEeCCHHHHHHHHHHcCCCeecC
Confidence 46899999999999999999999999999999998883 7999999999999999999999999999885
Q ss_pred CeEEEEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCC-eEEEEE-cccCCCCCcceEEEEEecCHHHHHHHHH
Q 002709 199 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYI-PHNTDTGLSKGFAFVKFTCKRDAESAIQ 276 (890)
Q Consensus 199 g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-I~~v~i-~~~~~~g~~~g~afV~F~~~e~A~~Al~ 276 (890)
|+.+.+... ...++|||+|||..+++++|.++|+.++. +..+.+ ......++++|||||+|.++++|..|+.
T Consensus 127 Gr~l~V~~S------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Air 200 (578)
T TIGR01648 127 GRLLGVCIS------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARR 200 (578)
T ss_pred Ccccccccc------ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHH
Confidence 677666432 34679999999999999999999999863 444443 3333456789999999999999999999
Q ss_pred HhCC--ceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCC
Q 002709 277 KFNG--QKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNAD 354 (890)
Q Consensus 277 ~lng--~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (890)
.|+. ..+.|+.|.|+|+.|..... .
T Consensus 201 kL~~gki~l~Gr~I~VdwA~p~~~~d----------------------~------------------------------- 227 (578)
T TIGR01648 201 KLMPGRIQLWGHVIAVDWAEPEEEVD----------------------E------------------------------- 227 (578)
T ss_pred HhhccceEecCceEEEEeeccccccc----------------------c-------------------------------
Confidence 8864 35789999999997542100 0
Q ss_pred chhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEE
Q 002709 355 FDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIF 434 (890)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~ 434 (890)
+ .....++||
T Consensus 228 -----------------------------------------------~-----------------------~~~~~k~Lf 237 (578)
T TIGR01648 228 -----------------------------------------------D-----------------------VMAKVKILY 237 (578)
T ss_pred -----------------------------------------------c-----------------------ccccccEEE
Confidence 0 000135899
Q ss_pred EcCCCCCCCHHHHHHHHhhC--CCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEc
Q 002709 435 ICNLPFDLDNEEVKQRFSAF--GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 512 (890)
Q Consensus 435 V~NLp~~~tee~L~~~F~~f--G~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a 512 (890)
|+|||..+|+++|+++|+.| |.|+.|.++ ++||||+|.+.++|.+|++.|| +..|+|+.|.|.||
T Consensus 238 VgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~ln-----G~~i~Gr~I~V~~A 304 (578)
T TIGR01648 238 VRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELN-----GKELEGSEIEVTLA 304 (578)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhC-----CCEECCEEEEEEEc
Confidence 99999999999999999999 999998764 4699999999999999999999 99999999999999
Q ss_pred cChhhhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCccCeEEEeCCCC
Q 002709 513 LDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPK 592 (890)
Q Consensus 513 ~~k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~ 592 (890)
.+............. .+. ..... .... -.++.+.....+|++.|+++
T Consensus 305 kp~~~~~~~~~~rg~-------------gg~--~~~~~-----------------~~~~-~~g~~~sp~s~~~~~g~~~~ 351 (578)
T TIGR01648 305 KPVDKKSYVRYTRGT-------------GGR--GKERQ-----------------AARQ-SLGQVYDPASRSLAYEDYYY 351 (578)
T ss_pred cCCCccccccccccc-------------CCC--ccccc-----------------cccc-ccCcccCccccccccccccc
Confidence 876432111000000 000 00000 0000 00111222357899999999
Q ss_pred CCCHHHHHHHHHH
Q 002709 593 SMTEKGLKKLCID 605 (890)
Q Consensus 593 ~~teeeL~~lF~~ 605 (890)
..+++-+.++|..
T Consensus 352 ~~~~~~~~~~f~~ 364 (578)
T TIGR01648 352 HPPYAPSLHFPRM 364 (578)
T ss_pred cccccchhhcccc
Confidence 9999999999994
No 11
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.4e-36 Score=295.83 Aligned_cols=301 Identities=23% Similarity=0.375 Sum_probs=233.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
....+.|+|--||..+|+++|+.+|...|+|++|++++|+.+|.+-||+||.|-+++||++|+..|||..|..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccC
Q 002709 293 AVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTST 372 (890)
Q Consensus 293 a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (890)
+.|....
T Consensus 118 ARPSs~~------------------------------------------------------------------------- 124 (360)
T KOG0145|consen 118 ARPSSDS------------------------------------------------------------------------- 124 (360)
T ss_pred ccCChhh-------------------------------------------------------------------------
Confidence 9875310
Q ss_pred CCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHh
Q 002709 373 TGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFS 452 (890)
Q Consensus 373 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~ 452 (890)
-.+.+|||.+||..+|..+|..+|+
T Consensus 125 -------------------------------------------------------Ik~aNLYvSGlPktMtqkelE~iFs 149 (360)
T KOG0145|consen 125 -------------------------------------------------------IKDANLYVSGLPKTMTQKELEQIFS 149 (360)
T ss_pred -------------------------------------------------------hcccceEEecCCccchHHHHHHHHH
Confidence 0135899999999999999999999
Q ss_pred hCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecC--eEEEEEEccChhhhchhhhhhh-ccc
Q 002709 453 AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKKLAHDKEIDKS-KNE 529 (890)
Q Consensus 453 ~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~G--r~l~V~~a~~k~~~~~~~~~~~-~~~ 529 (890)
+||.|..-+|+.|..+|.++|.|||.|....+|+.||..|| |..-.| .+|.|.+|........+..... ...
T Consensus 150 ~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN-----G~~P~g~tepItVKFannPsq~t~~a~ls~ly~s 224 (360)
T KOG0145|consen 150 PFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN-----GQKPSGCTEPITVKFANNPSQKTNQALLSQLYQS 224 (360)
T ss_pred HhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc-----CCCCCCCCCCeEEEecCCcccccchhhhHHhhcC
Confidence 99999998999999999999999999999999999999999 544433 6899999987644433221110 000
Q ss_pred cccccc--hh----------h-hccccccCCCCCC-CCCChhhHHHHHHHHHHhhhccCCCCCCCccCeEEEeCCCCCCC
Q 002709 530 TNDHRN--LY----------L-AKEGLILEGTPAA-EGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMT 595 (890)
Q Consensus 530 ~~~~~~--l~----------l-~~eg~~~~~~p~a-~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~~t 595 (890)
...... ++ + .....+...+|.+ ++++. .....-|...-.+.+|||.||..+++
T Consensus 225 p~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~-------------l~~~~lp~~~~~g~ciFvYNLspd~d 291 (360)
T KOG0145|consen 225 PARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSG-------------LAGVNLPGGPGGGWCIFVYNLSPDAD 291 (360)
T ss_pred ccccCCCcccchhhhhccccccchhhhhccCCCccccccce-------------eeeeccCCCCCCeeEEEEEecCCCch
Confidence 000000 00 0 0000000011110 00000 01111233333568999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccEEE
Q 002709 596 EKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVE 675 (890)
Q Consensus 596 eeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~~~~~g~~~rliV~ 675 (890)
|.-|.++|. +||.|..|+|+||..++ .++|||||.+.+-++|..||..|||. .+| ++.|-|.
T Consensus 292 e~~LWQlFg---------pFGAv~nVKvirD~ttn------kCKGfgFVtMtNYdEAamAi~sLNGy--~lg-~rvLQVs 353 (360)
T KOG0145|consen 292 ESILWQLFG---------PFGAVTNVKVIRDFTTN------KCKGFGFVTMTNYDEAAMAIASLNGY--RLG-DRVLQVS 353 (360)
T ss_pred HhHHHHHhC---------cccceeeEEEEecCCcc------cccceeEEEecchHHHHHHHHHhcCc--ccc-ceEEEEE
Confidence 999999999 79999999999998766 89999999999999999999999996 345 2555598
Q ss_pred Ee
Q 002709 676 FA 677 (890)
Q Consensus 676 ~A 677 (890)
|-
T Consensus 354 FK 355 (360)
T KOG0145|consen 354 FK 355 (360)
T ss_pred Ee
Confidence 86
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.2e-36 Score=295.53 Aligned_cols=315 Identities=24% Similarity=0.299 Sum_probs=239.6
Q ss_pred cEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 002709 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (890)
Q Consensus 122 rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~ 201 (890)
..|+|.-||..+|+++|+.+|..+|+|++|++++||- +|.+.||+||.|..++||++|+..|||-.+..+.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKi---------tGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT 112 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKI---------TGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT 112 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccc---------cccccccceeeecChHHHHHHHhhhcceeeccce
Confidence 3467777899999999999999999999999999984 8999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q 002709 202 VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ 281 (890)
Q Consensus 202 i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~ 281 (890)
|.|...++.........|||.+||..+|..+|..+|++||.|..-+|..|..+|.++|.+||.|....+|+.||..|||.
T Consensus 113 IKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 113 IKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred EEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence 99988888888889999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred eeCC--eeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHH
Q 002709 282 KFGK--RPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEV 359 (890)
Q Consensus 282 ~l~g--~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (890)
.-.| .+|.|.|+............... .+.. .. ..++....
T Consensus 193 ~P~g~tepItVKFannPsq~t~~a~ls~l----y~sp---------------------------~r--r~~Gp~hh---- 235 (360)
T KOG0145|consen 193 KPSGCTEPITVKFANNPSQKTNQALLSQL----YQSP---------------------------AR--RYGGPMHH---- 235 (360)
T ss_pred CCCCCCCCeEEEecCCcccccchhhhHHh----hcCc---------------------------cc--cCCCcccc----
Confidence 8644 57999998643211110000000 0000 00 00000000
Q ss_pred HHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCC
Q 002709 360 DIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLP 439 (890)
Q Consensus 360 ~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp 439 (890)
+.-+-.+.+++. |.+...+..|+.....+. +.++ --......+.+|||.||.
T Consensus 236 ~~~r~r~~~~~~-----~~~~~~rfsP~~~d~m~~---------l~~~--------------~lp~~~~~g~ciFvYNLs 287 (360)
T KOG0145|consen 236 QAQRFRLDNLLN-----PHAAQARFSPMTIDGMSG---------LAGV--------------NLPGGPGGGWCIFVYNLS 287 (360)
T ss_pred hhhhhccccccc-----hhhhhccCCCccccccce---------eeee--------------ccCCCCCCeeEEEEEecC
Confidence 000000000000 000111111221111100 0000 000123347899999999
Q ss_pred CCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccCh
Q 002709 440 FDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 515 (890)
Q Consensus 440 ~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k 515 (890)
++++|.-|+.+|.+||.|..|+|++|..+.+++|||||.+.+-++|..||..|| |..++++.|.|.+...+
T Consensus 288 pd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLN-----Gy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 288 PDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN-----GYRLGDRVLQVSFKTNK 358 (360)
T ss_pred CCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhc-----CccccceEEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999 99999999999996543
No 13
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-36 Score=333.50 Aligned_cols=312 Identities=23% Similarity=0.367 Sum_probs=261.0
Q ss_pred cccCCCCCccceEEEEecCHHHHHHHHHhhCCceeCCeeeEEeecccchhHHhhhhhhchhhhhhhhhhcccCCCCcccc
Q 002709 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISG 81 (890)
Q Consensus 2 v~dk~tg~srG~AfV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~r~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (890)
.+|- | |.|||||+|.+++||++||+.||...|.|++|+|+|+.. .
T Consensus 31 c~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r-d------------------------------- 75 (369)
T KOG0123|consen 31 CRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR-D------------------------------- 75 (369)
T ss_pred eecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc-C-------------------------------
Confidence 3555 4 999999999999999999999999999999999999931 1
Q ss_pred ccccchhhhhcccCCCCcccccccccccCccccccccCCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhh
Q 002709 82 AEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELE 161 (890)
Q Consensus 82 ~~~~~~~~~e~~~~~~~~k~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~ 161 (890)
...|||.||+++++..+|+++|+.||.|++|++..+.
T Consensus 76 ---------------------------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~---- 112 (369)
T KOG0123|consen 76 ---------------------------------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE---- 112 (369)
T ss_pred ---------------------------------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC----
Confidence 1128999999999999999999999999999998875
Q ss_pred hccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEecCCCC--------CCCCCCcEEEEccCCCCCCHHHH
Q 002709 162 QHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGE--------GSKTQKWKLIIRNIPFKAKVNEI 233 (890)
Q Consensus 162 ~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v~~~~~~--------~~~~~~~~l~V~nLp~~~te~~L 233 (890)
.| ++|| ||+|.+.++|.+|+..+||..+.|+.|++...... ......+.++|.|++.+.+++.|
T Consensus 113 ------~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l 184 (369)
T KOG0123|consen 113 ------NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEEL 184 (369)
T ss_pred ------CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHH
Confidence 34 8999 99999999999999999999999999998442211 12344578999999999999999
Q ss_pred HHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCcCCCCCCCCcccccc
Q 002709 234 KDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGV 313 (890)
Q Consensus 234 ~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~ 313 (890)
..+|..||.|.++.++.+. .|.+++|+||.|.++++|..|+..|++..+.+..+.|..+..+.....
T Consensus 185 ~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~------------ 251 (369)
T KOG0123|consen 185 KDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREA------------ 251 (369)
T ss_pred HHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHH------------
Confidence 9999999999999999876 466999999999999999999999999999999999987754211000
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCC
Q 002709 314 QNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQD 393 (890)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~ 393 (890)
.....+....
T Consensus 252 -----------------------------------------------~l~~~~~~~~----------------------- 261 (369)
T KOG0123|consen 252 -----------------------------------------------ELKRKFEQEF----------------------- 261 (369)
T ss_pred -----------------------------------------------HHhhhhHhhh-----------------------
Confidence 0000000000
Q ss_pred CchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCc
Q 002709 394 SDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKG 473 (890)
Q Consensus 394 ~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g 473 (890)
..........+|||.||+..++.+.|+++|+.||.|.+++|+.+. .+.++|
T Consensus 262 ----------------------------~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG 312 (369)
T KOG0123|consen 262 ----------------------------AKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKG 312 (369)
T ss_pred ----------------------------hhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccc
Confidence 000012235699999999999999999999999999999988875 788999
Q ss_pred eEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChh
Q 002709 474 TGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 516 (890)
Q Consensus 474 ~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~ 516 (890)
||||+|.+.++|.+|+..+| +..+.|++|.|.++..+.
T Consensus 313 ~gfV~fs~~eeA~~A~~~~n-----~~~i~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 313 FGFVEFSSPEEAKKAMTEMN-----GRLIGGKPLYVAVAQRKE 350 (369)
T ss_pred eEEEEcCCHHHHHHHHHhhC-----hhhhcCCchhhhHHhhhc
Confidence 99999999999999999999 999999999999988443
No 14
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.8e-35 Score=314.02 Aligned_cols=249 Identities=24% Similarity=0.319 Sum_probs=215.8
Q ss_pred cCCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 002709 118 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (890)
Q Consensus 118 ~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i 197 (890)
...++.||||.||.++.|++|..+|.+.|+|.++++|+++. +|.++|||||.|.+.++|+.||..||+..|
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~---------sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei 150 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPF---------SGDNRGYAFVTFCTKEEAQEAIKELNNYEI 150 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeeccc---------CCCCcceEEEEeecHHHHHHHHHHhhCccc
Confidence 35789999999999999999999999999999999999974 899999999999999999999999999988
Q ss_pred -cCeEEEEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCC-eEEEEEcccCC-CCCcceEEEEEecCHHHHHHH
Q 002709 198 -KGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNTD-TGLSKGFAFVKFTCKRDAESA 274 (890)
Q Consensus 198 -~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-I~~v~i~~~~~-~g~~~g~afV~F~~~e~A~~A 274 (890)
.|+.|.|. .....++|||+|||.++++++|.+.|++.++ |..|.|...+. ..+++|||||+|.++..|..|
T Consensus 151 r~GK~igvc------~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~a 224 (506)
T KOG0117|consen 151 RPGKLLGVC------VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMA 224 (506)
T ss_pred cCCCEeEEE------EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHH
Confidence 47788775 3456789999999999999999999999875 77777766553 368999999999999999999
Q ss_pred HHHhCCc--eeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCC
Q 002709 275 IQKFNGQ--KFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSN 352 (890)
Q Consensus 275 l~~lng~--~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (890)
..+|-.. .+.|+.|.|+||.|.....
T Consensus 225 RrKl~~g~~klwgn~~tVdWAep~~e~d---------------------------------------------------- 252 (506)
T KOG0117|consen 225 RRKLMPGKIKLWGNAITVDWAEPEEEPD---------------------------------------------------- 252 (506)
T ss_pred HhhccCCceeecCCcceeeccCcccCCC----------------------------------------------------
Confidence 9887543 4689999999998763100
Q ss_pred CCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCe
Q 002709 353 ADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNT 432 (890)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 432 (890)
.+.++. -..
T Consensus 253 ------------------------------------------------ed~ms~-----------------------VKv 261 (506)
T KOG0117|consen 253 ------------------------------------------------EDTMSK-----------------------VKV 261 (506)
T ss_pred ------------------------------------------------hhhhhh-----------------------eee
Confidence 000111 158
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEc
Q 002709 433 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 512 (890)
Q Consensus 433 l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a 512 (890)
|||+||+.++|+|.|+++|..||.|+.|+.+ +.||||+|...++|.+||+.+| |..|+|..|.|.+|
T Consensus 262 LYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--------rDYaFVHf~eR~davkAm~~~n-----gkeldG~~iEvtLA 328 (506)
T KOG0117|consen 262 LYVRNLMESTTEETLKKLFNEFGKVERVKKP--------RDYAFVHFAEREDAVKAMKETN-----GKELDGSPIEVTLA 328 (506)
T ss_pred eeeeccchhhhHHHHHHHHHhccceEEeecc--------cceeEEeecchHHHHHHHHHhc-----CceecCceEEEEec
Confidence 9999999999999999999999999999776 4499999999999999999999 99999999999999
Q ss_pred cChhh
Q 002709 513 LDKKL 517 (890)
Q Consensus 513 ~~k~~ 517 (890)
.|...
T Consensus 329 KP~~k 333 (506)
T KOG0117|consen 329 KPVDK 333 (506)
T ss_pred CChhh
Confidence 98643
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.6e-34 Score=332.93 Aligned_cols=278 Identities=21% Similarity=0.270 Sum_probs=220.1
Q ss_pred CHHHHHHHHHHhCCceecCeEEEEecCCC-----CCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCC
Q 002709 181 TVKSACASVALLHQKEIKGGTVWARQLGG-----EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG 255 (890)
Q Consensus 181 s~e~A~~Ai~~ln~~~i~g~~i~v~~~~~-----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g 255 (890)
..+.|.+||..+++..+...........+ .......++|||+|||+++++++|+++|+.||.|..|+|++| .+|
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG 96 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSG 96 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCC
Confidence 46889999998888766433222211111 112345689999999999999999999999999999999999 789
Q ss_pred CcceEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcc
Q 002709 256 LSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDA 334 (890)
Q Consensus 256 ~~~g~afV~F~~~e~A~~Al~~lng~~l~-g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (890)
.++|||||+|.+.++|++||+.||+..|. |+.|.|.++.
T Consensus 97 ~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~---------------------------------------- 136 (578)
T TIGR01648 97 QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV---------------------------------------- 136 (578)
T ss_pred CccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc----------------------------------------
Confidence 99999999999999999999999999884 6666665431
Q ss_pred cccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCC
Q 002709 335 ETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSK 414 (890)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~ 414 (890)
T Consensus 137 -------------------------------------------------------------------------------- 136 (578)
T TIGR01648 137 -------------------------------------------------------------------------------- 136 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCCC-eEEEEEee-cCCCCCCCceEEEEECCHHHHHHHHHHh
Q 002709 415 SKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPVL-HQVTKRPKGTGFLKFKTVEAATAAVSAS 492 (890)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~-I~~v~i~~-~~~~g~~~g~aFV~F~~~e~A~~Ai~~l 492 (890)
..++|||+|||.++++++|.++|+.++. +..+.++. ....++++|||||+|.++++|..|+..|
T Consensus 137 --------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL 202 (578)
T TIGR01648 137 --------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKL 202 (578)
T ss_pred --------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHh
Confidence 0258999999999999999999999864 44443332 2235678999999999999999999988
Q ss_pred ccCCCCCeeecCeEEEEEEccChhhhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhc
Q 002709 493 KTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTK 572 (890)
Q Consensus 493 n~~~~~g~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~ 572 (890)
+.. ...+.|+.|.|.|+.+......
T Consensus 203 ~~g---ki~l~Gr~I~VdwA~p~~~~d~---------------------------------------------------- 227 (578)
T TIGR01648 203 MPG---RIQLWGHVIAVDWAEPEEEVDE---------------------------------------------------- 227 (578)
T ss_pred hcc---ceEecCceEEEEeecccccccc----------------------------------------------------
Confidence 621 3578999999999876532100
Q ss_pred cCCCCCCCccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCC--CCeEEEEEeecccCCccCCCCCcceEEEEEeCCHH
Q 002709 573 LQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQK--PVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQ 650 (890)
Q Consensus 573 ~~~p~~~~s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~--G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e 650 (890)
.......+|||+|||.++|+++|+++|+. | |.|..|+++ ++||||+|.+++
T Consensus 228 ----~~~~~~k~LfVgNL~~~~tee~L~~~F~~---------f~~G~I~rV~~~--------------rgfAFVeF~s~e 280 (578)
T TIGR01648 228 ----DVMAKVKILYVRNLMTTTTEEIIEKSFSE---------FKPGKVERVKKI--------------RDYAFVHFEDRE 280 (578)
T ss_pred ----cccccccEEEEeCCCCCCCHHHHHHHHHh---------cCCCceEEEEee--------------cCeEEEEeCCHH
Confidence 00001357999999999999999999994 8 999999775 579999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCccEEEEec
Q 002709 651 HALVALRVLNNNPKTFGPEHRPIVEFAV 678 (890)
Q Consensus 651 ~A~~Al~~Lng~~~~~g~~~rliV~~A~ 678 (890)
+|.+||..||+. .|. ++.|.|.||.
T Consensus 281 ~A~kAi~~lnG~--~i~-Gr~I~V~~Ak 305 (578)
T TIGR01648 281 DAVKAMDELNGK--ELE-GSEIEVTLAK 305 (578)
T ss_pred HHHHHHHHhCCC--EEC-CEEEEEEEcc
Confidence 999999999996 343 3777799995
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.7e-34 Score=308.22 Aligned_cols=338 Identities=23% Similarity=0.312 Sum_probs=230.5
Q ss_pred cEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002709 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (890)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk 296 (890)
.||||++||+.++.++|.++|+.+|+|..|.++.+..++.++|||||.|+-.+|+++|+..+++..|.|+.|.|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 69999999999999999999999999999999999988899999999999999999999999999999999999999765
Q ss_pred CCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCC
Q 002709 297 NIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 376 (890)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 376 (890)
.......... . + .+.+. +.
T Consensus 86 ~r~e~~~~~e-------~----~-----------------~veK~------------------------~~--------- 104 (678)
T KOG0127|consen 86 ARSEEVEKGE-------N----K-----------------AVEKP------------------------IE--------- 104 (678)
T ss_pred ccchhccccc-------c----h-----------------hhhcc------------------------cc---------
Confidence 3211000000 0 0 00000 00
Q ss_pred CCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCccccc-CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCC
Q 002709 377 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQT-EGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 455 (890)
Q Consensus 377 p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG 455 (890)
. +++. .....+...|.|+|||+.+.+.+|..+|+.||
T Consensus 105 --------------q----------------------------~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G 142 (678)
T KOG0127|consen 105 --------------Q----------------------------KRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFG 142 (678)
T ss_pred --------------c----------------------------CCcchhhccCccceEEeecCCcccCcHHHHHHHhhcc
Confidence 0 0000 00112246899999999999999999999999
Q ss_pred CeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhh------hhhh---
Q 002709 456 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKE------IDKS--- 526 (890)
Q Consensus 456 ~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~~~~~------~~~~--- 526 (890)
.|..|.|++... |.-.|||||.|....+|..|++.+| +..|+||+|-|.||.++....... +++.
T Consensus 143 ~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N-----~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~e 216 (678)
T KOG0127|consen 143 KVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFN-----GNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKE 216 (678)
T ss_pred eEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhcc-----CceecCceeEEeeecccccccccchhhhhhhhhccch
Confidence 999999987764 4445999999999999999999999 999999999999999986443211 1110
Q ss_pred ---ccccccccchhhhcccccc-------CC---------CCCCCCCChhhHHHHHHHHHHhhhccCC-CCCCCccCeEE
Q 002709 527 ---KNETNDHRNLYLAKEGLIL-------EG---------TPAAEGVSDDDMSKRQMLHEKKMTKLQS-PNFHVSRTRLV 586 (890)
Q Consensus 527 ---~~~~~~~~~l~l~~eg~~~-------~~---------~p~a~~~s~~~~~~r~~~~~~~~~~~~~-p~~~~s~~~L~ 586 (890)
.....+.-.-+...+|... .+ ..........+.+........+...... +..-.-..+||
T Consensus 217 Eed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVF 296 (678)
T KOG0127|consen 217 EEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVF 296 (678)
T ss_pred hhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEE
Confidence 0000000000000000000 00 0000000000000000000000001111 11111246899
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhc---CCC
Q 002709 587 IYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN---NNP 663 (890)
Q Consensus 587 V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Ln---g~~ 663 (890)
|+|||+++|+++|.++|+ +||.|..+.|+.++.|+ +++|.|||.|.+..+|..||.+.. +..
T Consensus 297 vRNL~fD~tEEel~~~fs---------kFG~v~ya~iV~~k~T~------~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g 361 (678)
T KOG0127|consen 297 VRNLPFDTTEEELKEHFS---------KFGEVKYAIIVKDKDTG------HSKGTAFVKFKTQIAAQNCIEAASPASEDG 361 (678)
T ss_pred EecCCccccHHHHHHHHH---------hhccceeEEEEeccCCC------CcccceEEEeccHHHHHHHHHhcCccCCCc
Confidence 999999999999999999 59999999999999887 999999999999999999999882 221
Q ss_pred CCCCCCCccEEEEec
Q 002709 664 KTFGPEHRPIVEFAV 678 (890)
Q Consensus 664 ~~~g~~~rliV~~A~ 678 (890)
.+...++-|.|..|.
T Consensus 362 ~~ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 362 SVLLDGRLLKVTLAV 376 (678)
T ss_pred eEEEeccEEeeeecc
Confidence 122233444599885
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=299.69 Aligned_cols=289 Identities=23% Similarity=0.305 Sum_probs=230.8
Q ss_pred eCCHHHHHHHHHHhCCceecCeEEEEecCCC------CCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccC
Q 002709 179 YTTVKSACASVALLHQKEIKGGTVWARQLGG------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 252 (890)
Q Consensus 179 F~s~e~A~~Ai~~ln~~~i~g~~i~v~~~~~------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~ 252 (890)
..+.++|.+||..-.+..|.-.. --+..++ ......++.|||+.||.++.|++|.-+|+..|.|..++|++|+
T Consensus 41 ~~~~eaal~al~E~tgy~l~ve~-gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~ 119 (506)
T KOG0117|consen 41 VQSEEAALKALLERTGYTLVVEN-GQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDP 119 (506)
T ss_pred cccHHHHHHHHHHhcCceEEEec-cccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecc
Confidence 34578888888765554432000 0011111 1134667899999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhCCcee-CCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCC
Q 002709 253 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKF-GKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGD 331 (890)
Q Consensus 253 ~~g~~~g~afV~F~~~e~A~~Al~~lng~~l-~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (890)
.+|.++|||||.|.+.++|+.||+.||+..| .|+.|.|..+..
T Consensus 120 ~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva------------------------------------ 163 (506)
T KOG0117|consen 120 FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA------------------------------------ 163 (506)
T ss_pred cCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee------------------------------------
Confidence 9999999999999999999999999999998 799999987641
Q ss_pred CcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccc
Q 002709 332 DDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLN 411 (890)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~ 411 (890)
T Consensus 164 -------------------------------------------------------------------------------- 163 (506)
T KOG0117|consen 164 -------------------------------------------------------------------------------- 163 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCCC-eEEEEEeecCC-CCCCCceEEEEECCHHHHHHHH
Q 002709 412 SSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPVLHQV-TKRPKGTGFLKFKTVEAATAAV 489 (890)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~-I~~v~i~~~~~-~g~~~g~aFV~F~~~e~A~~Ai 489 (890)
++.|||+|||.+.++++|.+.|++.++ |+.|.|...+. ..++||||||+|.++..|..|-
T Consensus 164 ------------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aR 225 (506)
T KOG0117|consen 164 ------------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMAR 225 (506)
T ss_pred ------------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHH
Confidence 368999999999999999999999875 66776655443 4579999999999999999999
Q ss_pred HHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHh
Q 002709 490 SASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKK 569 (890)
Q Consensus 490 ~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~ 569 (890)
..|-.. .+.|.|+.+.|.||.+..+..... |
T Consensus 226 rKl~~g---~~klwgn~~tVdWAep~~e~ded~------------------------------------m---------- 256 (506)
T KOG0117|consen 226 RKLMPG---KIKLWGNAITVDWAEPEEEPDEDT------------------------------------M---------- 256 (506)
T ss_pred hhccCC---ceeecCCcceeeccCcccCCChhh------------------------------------h----------
Confidence 888632 688999999999998874321000 0
Q ss_pred hhccCCCCCCCccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCH
Q 002709 570 MTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEH 649 (890)
Q Consensus 570 ~~~~~~p~~~~s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~ 649 (890)
. .-..|||+||+.++|++.|+++|.+ ||.|..|+.++| ||||.|.+.
T Consensus 257 -s---------~VKvLYVRNL~~~tTeE~lk~~F~~---------~G~veRVkk~rD--------------YaFVHf~eR 303 (506)
T KOG0117|consen 257 -S---------KVKVLYVRNLMESTTEETLKKLFNE---------FGKVERVKKPRD--------------YAFVHFAER 303 (506)
T ss_pred -h---------heeeeeeeccchhhhHHHHHHHHHh---------ccceEEeecccc--------------eeEEeecch
Confidence 0 1146999999999999999999995 999999988854 999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccEEEEecccHHHHHHH
Q 002709 650 QHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLKQR 687 (890)
Q Consensus 650 e~A~~Al~~Lng~~~~~g~~~rliV~~A~e~~~~~~~r 687 (890)
++|.+||..|||. .+-| ..|-|-+|.--.++...|
T Consensus 304 ~davkAm~~~ngk-eldG--~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 304 EDAVKAMKETNGK-ELDG--SPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HHHHHHHHHhcCc-eecC--ceEEEEecCChhhhccch
Confidence 9999999999996 4544 444499996544444444
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2e-32 Score=318.73 Aligned_cols=338 Identities=20% Similarity=0.286 Sum_probs=225.1
Q ss_pred cCCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 002709 118 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (890)
Q Consensus 118 ~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i 197 (890)
.+..++|||+|||..+++++|+++|+.||.|..|.++.++. +|.++|||||+|.+.++|.+||. |+|..|
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~---------~~~skg~afVeF~~~e~A~~Al~-l~g~~~ 155 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRN---------SRRSKGVAYVEFYDVESVIKALA-LTGQML 155 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---------CCCcceEEEEEECCHHHHHHHHH-hCCCEE
Confidence 45678999999999999999999999999999999998863 78999999999999999999997 899999
Q ss_pred cCeEEEEecCCCC------------CCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEe
Q 002709 198 KGGTVWARQLGGE------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265 (890)
Q Consensus 198 ~g~~i~v~~~~~~------------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F 265 (890)
.|+.|.+...... ......++|||+|||..+|+++|+++|+.||.|..|.|+.+..+|.++|||||+|
T Consensus 156 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f 235 (457)
T TIGR01622 156 LGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQF 235 (457)
T ss_pred CCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEE
Confidence 9999988543211 1112357999999999999999999999999999999999988889999999999
Q ss_pred cCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCcc
Q 002709 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSE 345 (890)
Q Consensus 266 ~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (890)
.+.++|..|+..|||..|.|++|.|.|+............. ....... .
T Consensus 236 ~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~----~~~~~~~-----~---------------------- 284 (457)
T TIGR01622 236 HDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTF----EDIDKQQ-----Q---------------------- 284 (457)
T ss_pred CCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhh----ccccccc-----c----------------------
Confidence 99999999999999999999999999986321111100000 0000000 0
Q ss_pred ccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCccc--cc
Q 002709 346 KEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLK--QT 423 (890)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~--~~ 423 (890)
.........................+.+++..... ..+.....+.. ........+............ ..
T Consensus 285 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (457)
T TIGR01622 285 ---MGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKI-ALMQKLQRDGI-----IDPNIPSRYATGALAIMARNSFVPS 355 (457)
T ss_pred ---CCcCCCccchHHHHHhhccCCCCccccCCCccchh-hhhcccccccc-----ccccccccccccccccccCCCCCCc
Confidence 00000000000000000000000000000000000 00000000000 000000000000000000000 00
Q ss_pred CCCCCCCCeEEEcCCCCCCC----------HHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhc
Q 002709 424 EGEDELQNTIFICNLPFDLD----------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 493 (890)
Q Consensus 424 ~~~~~~~~~l~V~NLp~~~t----------ee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln 493 (890)
........+|+|.||....+ .++|++.|++||.|..|.|.. ....|++||+|.+.++|.+|+..||
T Consensus 356 ~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e~A~~A~~~ln 431 (457)
T TIGR01622 356 TNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVDAALAAFQALN 431 (457)
T ss_pred ccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHHHHHHHHHHhc
Confidence 01234568999999965544 368999999999999998753 3467999999999999999999999
Q ss_pred cCCCCCeeecCeEEEEEEccC
Q 002709 494 TTSGLGIFLKGRQLTVLKALD 514 (890)
Q Consensus 494 ~~~~~g~~l~Gr~l~V~~a~~ 514 (890)
|..|+|+.|.|.+...
T Consensus 432 -----Gr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 432 -----GRYFGGKMITAAFVVN 447 (457)
T ss_pred -----CcccCCeEEEEEEEcH
Confidence 9999999999999764
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.6e-32 Score=319.44 Aligned_cols=323 Identities=24% Similarity=0.360 Sum_probs=220.7
Q ss_pred CCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002709 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (890)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a 293 (890)
...++|||+|||..+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||. |+|..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 346799999999999999999999999999999999999899999999999999999999997 8999999999999876
Q ss_pred cCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCC
Q 002709 294 VPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTT 373 (890)
Q Consensus 294 ~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (890)
.......... ..
T Consensus 166 ~~~~~~~~~~------------------------------------------------------------------~~-- 177 (457)
T TIGR01622 166 QAEKNRAAKA------------------------------------------------------------------AT-- 177 (457)
T ss_pred chhhhhhhhc------------------------------------------------------------------cc--
Confidence 3221000000 00
Q ss_pred CCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhh
Q 002709 374 GSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSA 453 (890)
Q Consensus 374 g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~ 453 (890)
...+ .....++|||+|||+.+|+++|+++|+.
T Consensus 178 -----------------------------~~~~-------------------~~p~~~~l~v~nl~~~~te~~l~~~f~~ 209 (457)
T TIGR01622 178 -----------------------------HQPG-------------------DIPNFLKLYVGNLHFNITEQELRQIFEP 209 (457)
T ss_pred -----------------------------ccCC-------------------CCCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 0000 0011469999999999999999999999
Q ss_pred CCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhccccc--
Q 002709 454 FGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETN-- 531 (890)
Q Consensus 454 fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~~~~-- 531 (890)
||.|..|.++.+..+|.++|||||+|.+.++|.+|+..|| |..|.|++|.|.|+...................
T Consensus 210 ~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~-----g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~ 284 (457)
T TIGR01622 210 FGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMN-----GFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQ 284 (457)
T ss_pred cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcC-----CcEECCEEEEEEEccCCCccccchhhhcccccccc
Confidence 9999999999999889999999999999999999999999 999999999999987432111100000000000
Q ss_pred cccc--------hh--hhcc----ccccCCCCC-C---CCCChh-----hHHHHHHH----HHHhhhccCCCCCCCccCe
Q 002709 532 DHRN--------LY--LAKE----GLILEGTPA-A---EGVSDD-----DMSKRQML----HEKKMTKLQSPNFHVSRTR 584 (890)
Q Consensus 532 ~~~~--------l~--l~~e----g~~~~~~p~-a---~~~s~~-----~~~~r~~~----~~~~~~~~~~p~~~~s~~~ 584 (890)
...+ +. +... +...++... . ..+... ........ .......+...+......+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (457)
T TIGR01622 285 MGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTC 364 (457)
T ss_pred CCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcE
Confidence 0000 00 0000 000000000 0 000000 00000000 0000001111112345678
Q ss_pred EEEeCCCCCCC----------HHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHH
Q 002709 585 LVIYNLPKSMT----------EKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALV 654 (890)
Q Consensus 585 L~V~NLP~~~t----------eeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~ 654 (890)
|+|.||....+ .++|++.|+ .||.|..|.|... .+.|++||+|.++++|..
T Consensus 365 l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~---------k~G~v~~v~v~~~----------~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 365 LVLSNMFDPATEEEPNFDNEILDDVKEECS---------KYGGVVHIYVDTK----------NSAGKIYLKFSSVDAALA 425 (457)
T ss_pred EEEecCCCCcccccchHHHHHHHHHHHHHH---------hcCCeeEEEEeCC----------CCceeEEEEECCHHHHHH
Confidence 99999954433 245666666 4999999988743 467999999999999999
Q ss_pred HHHHhcCCCCCCCCCCccEEEEeccc
Q 002709 655 ALRVLNNNPKTFGPEHRPIVEFAVDN 680 (890)
Q Consensus 655 Al~~Lng~~~~~g~~~rliV~~A~e~ 680 (890)
|+++|||. +|+ ++.|.|.|..+.
T Consensus 426 A~~~lnGr--~f~-gr~i~~~~~~~~ 448 (457)
T TIGR01622 426 AFQALNGR--YFG-GKMITAAFVVND 448 (457)
T ss_pred HHHHhcCc--ccC-CeEEEEEEEcHH
Confidence 99999994 787 355559999653
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=9.7e-32 Score=317.27 Aligned_cols=277 Identities=21% Similarity=0.250 Sum_probs=210.6
Q ss_pred ccCCCcEEEEcCCCccchHHHHHHHhhcC------------CCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHH
Q 002709 117 KQRVARTVIIGGLLNADMAEEVHRLAGSI------------GTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKS 184 (890)
Q Consensus 117 ~~~~~rtv~V~nLp~~~te~~L~~~F~~~------------G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~ 184 (890)
..+..++|||||||+.+++++|.++|..+ +.|..+.+ +..+|||||+|.+.++
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---------------~~~kg~afVeF~~~e~ 235 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---------------NKEKNFAFLEFRTVEE 235 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---------------CCCCCEEEEEeCCHHH
Confidence 44668999999999999999999999975 23444444 4567899999999999
Q ss_pred HHHHHHHhCCceecCeEEEEecCCCCC-----------------------------CCCCCcEEEEccCCCCCCHHHHHH
Q 002709 185 ACASVALLHQKEIKGGTVWARQLGGEG-----------------------------SKTQKWKLIIRNIPFKAKVNEIKD 235 (890)
Q Consensus 185 A~~Ai~~ln~~~i~g~~i~v~~~~~~~-----------------------------~~~~~~~l~V~nLp~~~te~~L~~ 235 (890)
|..||. |+|..|.|..|.|.....-. ......+|||+|||+.+|+++|++
T Consensus 236 A~~Al~-l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~ 314 (509)
T TIGR01642 236 ATFAMA-LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKE 314 (509)
T ss_pred Hhhhhc-CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 999995 99999999999885321100 112346899999999999999999
Q ss_pred hhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCcCCCCCCCCccccccCC
Q 002709 236 MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQN 315 (890)
Q Consensus 236 ~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~ 315 (890)
+|+.||.|..+.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++............. +
T Consensus 315 ~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~-----~--- 386 (509)
T TIGR01642 315 LLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSN-----G--- 386 (509)
T ss_pred HHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccc-----c---
Confidence 99999999999999998899999999999999999999999999999999999999985331100000000 0
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCc
Q 002709 316 KGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSD 395 (890)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~ 395 (890)
. .+...... .+..
T Consensus 387 -------~-------------------------~~~~~~~~--------~~~~--------------------------- 399 (509)
T TIGR01642 387 -------M-------------------------APVTLLAK--------ALSQ--------------------------- 399 (509)
T ss_pred -------c-------------------------cccccccc--------cchh---------------------------
Confidence 0 00000000 0000
Q ss_pred hhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCC----------CHHHHHHHHhhCCCeEEEEEeec
Q 002709 396 KTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL----------DNEEVKQRFSAFGEVVSFVPVLH 465 (890)
Q Consensus 396 ~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~----------tee~L~~~F~~fG~I~~v~i~~~ 465 (890)
.+ ......+..+|+|.||...- ..++|+++|+.||.|..|.|+.+
T Consensus 400 -------~~------------------~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~ 454 (509)
T TIGR01642 400 -------SI------------------LQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRP 454 (509)
T ss_pred -------hh------------------ccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeecc
Confidence 00 00011235689999996421 23689999999999999998865
Q ss_pred C---CCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccC
Q 002709 466 Q---VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 514 (890)
Q Consensus 466 ~---~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~ 514 (890)
. .++...|+|||+|.+.++|.+|+..|| |..|+|+.|.|.|...
T Consensus 455 ~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln-----Gr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 455 NGDRNSTPGVGKVFLEYADVRSAEKAMEGMN-----GRKFNDRVVVAAFYGE 501 (509)
T ss_pred CcCCCcCCCcceEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEEeCH
Confidence 2 345568999999999999999999999 9999999999999653
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3.7e-30 Score=297.04 Aligned_cols=169 Identities=14% Similarity=0.207 Sum_probs=154.1
Q ss_pred CCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceec
Q 002709 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (890)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (890)
...++|||+|||+.+++++|+++|..||.|.+|.++.++. +|+++|||||+|.+.++|..|+..|||..|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~---------TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~ 175 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA---------TGKHKGFAFVEYEVPEAAQLALEQMNGQMLG 175 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCC---------CCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe
Confidence 4578999999999999999999999999999999998864 7999999999999999999999999999999
Q ss_pred CeEEEEecCCCCC-----------CCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecC
Q 002709 199 GGTVWARQLGGEG-----------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (890)
Q Consensus 199 g~~i~v~~~~~~~-----------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~ 267 (890)
|+.|.|....... .....++|||+|||..+++++|+++|+.||.|.+|.|+++..+|.++|||||+|.+
T Consensus 176 GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 176 GRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred cceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC
Confidence 9999986432211 11234699999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002709 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (890)
Q Consensus 268 ~e~A~~Al~~lng~~l~g~~I~V~~a~pk 296 (890)
.++|.+||..||+..|+|+.|+|.++.++
T Consensus 256 ~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 256 LQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 99999999999999999999999999754
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.98 E-value=2.3e-30 Score=305.57 Aligned_cols=309 Identities=20% Similarity=0.236 Sum_probs=209.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccC------------CCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPV------------GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~------------G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng 280 (890)
....++|||+|||+.+|+++|.++|..| +.|..+.+. ..+|||||+|.+.++|..||. |+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 4456799999999999999999999974 344444443 367999999999999999995 999
Q ss_pred ceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHH
Q 002709 281 QKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVD 360 (890)
Q Consensus 281 ~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (890)
..|.|+.|.|....... ...... .. ........ ..
T Consensus 245 ~~~~g~~l~v~r~~~~~---~~~~~~----~~---~~~~~~~~------------------------------~~----- 279 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYI---PVPQIT----PE---VSQKNPDD------------------------------NA----- 279 (509)
T ss_pred eEeeCceeEecCccccC---CccccC----CC---CCCCCCcc------------------------------cc-----
Confidence 99999999986532110 000000 00 00000000 00
Q ss_pred HHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCC
Q 002709 361 IARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPF 440 (890)
Q Consensus 361 ~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~ 440 (890)
.... . + ..........++|||+|||+
T Consensus 280 ---------------------------~~~~-----------~-----~-----------~~~~~~~~~~~~l~v~nlp~ 305 (509)
T TIGR01642 280 ---------------------------KNVE-----------K-----L-----------VNSTTVLDSKDRIYIGNLPL 305 (509)
T ss_pred ---------------------------cccc-----------c-----c-----------cccccCCCCCCEEEEeCCCC
Confidence 0000 0 0 00000112347999999999
Q ss_pred CCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhch
Q 002709 441 DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHD 520 (890)
Q Consensus 441 ~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~~~ 520 (890)
.+|+++|+++|+.||.|..+.|+.+..+|.++|||||+|.+.++|..||..|| |..|+|+.|.|.+|........
T Consensus 306 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~-----g~~~~~~~l~v~~a~~~~~~~~ 380 (509)
T TIGR01642 306 YLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALN-----GKDTGDNKLHVQRACVGANQAT 380 (509)
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEECccCCCCCC
Confidence 99999999999999999999999998899999999999999999999999999 9999999999999864321110
Q ss_pred hhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCccCeEEEeCCCCC--C----
Q 002709 521 KEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKS--M---- 594 (890)
Q Consensus 521 ~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~--~---- 594 (890)
.. ..+ +... .......+.. . .+. . ...+..+|+|.||... +
T Consensus 381 ~~----------~~~------~~~~-~~~~~~~~~~-----------~---~~~-~-~~~~s~v~~l~N~~~~~~l~~d~ 427 (509)
T TIGR01642 381 ID----------TSN------GMAP-VTLLAKALSQ-----------S---ILQ-I-GGKPTKVVQLTNLVTGDDLMDDE 427 (509)
T ss_pred cc----------ccc------cccc-cccccccchh-----------h---hcc-c-cCCCceEEEeccCCchhHhcCcc
Confidence 00 000 0000 0000000000 0 000 0 0123468999999642 1
Q ss_pred ----CHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 002709 595 ----TEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEH 670 (890)
Q Consensus 595 ----teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~~~~~g~~~ 670 (890)
..++|+++|+ .||.|..|.|+++.... ..+.+.|+|||+|.++++|..||..|||. .|+ ++
T Consensus 428 ~~~~~~edl~~~f~---------~~G~v~~v~i~~~~~~~---~~~~~~G~~fV~F~~~e~A~~A~~~lnGr--~~~-gr 492 (509)
T TIGR01642 428 EYEEIYEDVKTEFS---------KYGPLINIVIPRPNGDR---NSTPGVGKVFLEYADVRSAEKAMEGMNGR--KFN-DR 492 (509)
T ss_pred hHHHHHHHHHHHHH---------hcCCeeEEEeeccCcCC---CcCCCcceEEEEECCHHHHHHHHHHcCCC--EEC-Ce
Confidence 2367888898 49999999999753221 12356799999999999999999999995 565 47
Q ss_pred ccEEEEeccc
Q 002709 671 RPIVEFAVDN 680 (890)
Q Consensus 671 rliV~~A~e~ 680 (890)
.|+|.|..++
T Consensus 493 ~v~~~~~~~~ 502 (509)
T TIGR01642 493 VVVAAFYGED 502 (509)
T ss_pred EEEEEEeCHH
Confidence 7779999754
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.2e-31 Score=263.29 Aligned_cols=232 Identities=26% Similarity=0.454 Sum_probs=190.0
Q ss_pred CCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecC
Q 002709 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (890)
Q Consensus 120 ~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g 199 (890)
..||||||||.+++|++-|..+|+.+|.|..++++++.-
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~----------------------------------------- 43 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL----------------------------------------- 43 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-----------------------------------------
Confidence 568999999999999999999999999999999976521
Q ss_pred eEEEEecCCC--CCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHH
Q 002709 200 GTVWARQLGG--EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (890)
Q Consensus 200 ~~i~v~~~~~--~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~ 277 (890)
+.+|...... ........-|||+.|...++-+.|++.|.+||.|.+++|++|..|++++||+||.|-+.++|+.||..
T Consensus 44 ~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 44 KVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred ccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 0111111110 11122355799999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchh
Q 002709 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDE 357 (890)
Q Consensus 278 lng~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (890)
|||..|++|.|+-.||..|....... ...|+
T Consensus 124 MnGqWlG~R~IRTNWATRKp~e~n~~------------------------------------------------~ltfd- 154 (321)
T KOG0148|consen 124 MNGQWLGRRTIRTNWATRKPSEMNGK------------------------------------------------PLTFD- 154 (321)
T ss_pred hCCeeeccceeeccccccCccccCCC------------------------------------------------CccHH-
Confidence 99999999999999997664100000 00000
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcC
Q 002709 358 EVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICN 437 (890)
Q Consensus 358 ~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~N 437 (890)
.+++. ....+++|||+|
T Consensus 155 ------eV~NQ---------------------------------------------------------ssp~NtsVY~G~ 171 (321)
T KOG0148|consen 155 ------EVYNQ---------------------------------------------------------SSPDNTSVYVGN 171 (321)
T ss_pred ------HHhcc---------------------------------------------------------CCCCCceEEeCC
Confidence 01110 122368999999
Q ss_pred CCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccCh
Q 002709 438 LPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 515 (890)
Q Consensus 438 Lp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k 515 (890)
++..+|+++|+..|++||.|.+|+|..+ +||+||.|.+.|+|..||..+| +..++|+.+++.|.+..
T Consensus 172 I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mN-----ntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 172 IASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMN-----NTEIGGQLVRCSWGKEG 238 (321)
T ss_pred cCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhc-----CceeCceEEEEeccccC
Confidence 9999999999999999999999999876 6999999999999999999999 99999999999998754
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=6.1e-30 Score=270.66 Aligned_cols=382 Identities=21% Similarity=0.297 Sum_probs=239.0
Q ss_pred CCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCc-eec
Q 002709 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK-EIK 198 (890)
Q Consensus 120 ~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~-~i~ 198 (890)
++-.+|||-||..|+|.||+.+|++||.|.+|.+++||. +|.++|||||.|.+.++|.+|+.+||+. .|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~---------t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlp 103 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKS---------TGQSKGCCFVKYYTRKEADEAINALHNQKTLP 103 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccc---------cCcccceEEEEeccHHHHHHHHHHhhcccccC
Confidence 455699999999999999999999999999999999984 8999999999999999999999999764 566
Q ss_pred Ce--EEEEecCCCCCCC-CCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHH
Q 002709 199 GG--TVWARQLGGEGSK-TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275 (890)
Q Consensus 199 g~--~i~v~~~~~~~~~-~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al 275 (890)
|- +|.++....+... ...+.|||+-|+..+||.+|+++|++||.|++|.|.++. .+.++|||||.|.+.+.|..||
T Consensus 104 G~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 104 GMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred CCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHH
Confidence 64 4556555444332 347789999999999999999999999999999999986 5899999999999999999999
Q ss_pred HHhCCce-e--CCeeEEEEeecCCCCcCCCCC----------------CCC---------cc-ccccCCCCCCCC--CCC
Q 002709 276 QKFNGQK-F--GKRPIAVDWAVPKNIYSSGGA----------------AAG---------AY-EDGVQNKGDGNS--DSG 324 (890)
Q Consensus 276 ~~lng~~-l--~g~~I~V~~a~pk~~~~~~~~----------------~~~---------~~-~~~~~~~~~~~~--~~~ 324 (890)
+.|||.. + +..+|.|.||.+++......- ... .. ..+.+.....+. -.+
T Consensus 183 ka~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g 262 (510)
T KOG0144|consen 183 KALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGG 262 (510)
T ss_pred HhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCccccc
Confidence 9999986 4 567899999988764321110 000 00 000000000000 000
Q ss_pred CCCCC--C--------------------CCc-----ccccCCC--CCCccccCCCCCCCchhH-----HHHHHHHhhhcc
Q 002709 325 SDDDL--G--------------------DDD-----AETASDD--SNSSEKEDLPSNADFDEE-----VDIARKVLNKLT 370 (890)
Q Consensus 325 ~~~~~--~--------------------~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 370 (890)
.-... . ... .....+. ......+........... ...+...+....
T Consensus 263 ~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~ 342 (510)
T KOG0144|consen 263 LPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTP 342 (510)
T ss_pred ccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCc
Confidence 00000 0 000 0000000 000000000000000000 001111110000
Q ss_pred c---CCCCCCCCC--CchhhccCC---CCCCCchhhccccccccc----------cccccCC----CCCCcccccCCCCC
Q 002709 371 S---TTGSLPSLS--DDSALVKGN---KEQDSDKTVNESAKVSDV----------SKLNSSK----SKPKSLKQTEGEDE 428 (890)
Q Consensus 371 ~---~~g~~p~~~--~~~~~~~~~---~~~~~~~~~~~~e~~~~~----------~p~~~~~----~~~~~~~~~~~~~~ 428 (890)
. ..|.+.... +..+...+. .....-+..........+ .|-..+. .....--....+..
T Consensus 343 ~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGp 422 (510)
T KOG0144|consen 343 ANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGP 422 (510)
T ss_pred hhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCC
Confidence 0 011111100 000000000 000000000000000000 0000000 00000011123566
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002709 429 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 508 (890)
Q Consensus 429 ~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~ 508 (890)
.+.+|||.+||.+.-+.+|-..|.+||.|.+.++..|+.|+.+++|+||.|++..+|..||..|| |+.+++++|+
T Consensus 423 eGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amn-----gfQig~Krlk 497 (510)
T KOG0144|consen 423 EGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMN-----GFQIGSKRLK 497 (510)
T ss_pred CccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhc-----chhhccccce
Confidence 78899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccChh
Q 002709 509 VLKALDKK 516 (890)
Q Consensus 509 V~~a~~k~ 516 (890)
|...+++.
T Consensus 498 VQlk~~~~ 505 (510)
T KOG0144|consen 498 VQLKRDRN 505 (510)
T ss_pred EEeeeccC
Confidence 99877653
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=7.6e-30 Score=269.94 Aligned_cols=173 Identities=27% Similarity=0.414 Sum_probs=149.6
Q ss_pred CCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCce-e--CCeeEEE
Q 002709 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-F--GKRPIAV 290 (890)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~-l--~g~~I~V 290 (890)
...-.+||+-+|..++|.||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..|+... | ...+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 445689999999999999999999999999999999999999999999999999999999999998765 4 3467888
Q ss_pred EeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcc
Q 002709 291 DWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLT 370 (890)
Q Consensus 291 ~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (890)
.+|.....
T Consensus 112 k~Ad~E~e------------------------------------------------------------------------ 119 (510)
T KOG0144|consen 112 KYADGERE------------------------------------------------------------------------ 119 (510)
T ss_pred cccchhhh------------------------------------------------------------------------
Confidence 77742110
Q ss_pred cCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHH
Q 002709 371 STTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQR 450 (890)
Q Consensus 371 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~ 450 (890)
.....+.|||+-|+..+||.+|+++
T Consensus 120 -------------------------------------------------------r~~~e~KLFvg~lsK~~te~evr~i 144 (510)
T KOG0144|consen 120 -------------------------------------------------------RIVEERKLFVGMLSKQCTENEVREI 144 (510)
T ss_pred -------------------------------------------------------ccccchhhhhhhccccccHHHHHHH
Confidence 0011368999999999999999999
Q ss_pred HhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecC--eEEEEEEccChhhh
Q 002709 451 FSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKKLA 518 (890)
Q Consensus 451 F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~G--r~l~V~~a~~k~~~ 518 (890)
|++||.|+.|.|+++. .+.+||||||+|.+.+.|..||++||+ ...+.| .+|.|.||.++...
T Consensus 145 Fs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng----~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 145 FSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNG----TQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred HHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhcc----ceeeccCCCceEEEecccCCCc
Confidence 9999999999999986 789999999999999999999999994 356665 58999999986544
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.97 E-value=3.5e-30 Score=288.48 Aligned_cols=366 Identities=20% Similarity=0.291 Sum_probs=270.8
Q ss_pred cceEEEEecCHHHHHHHHHhhCCceeCCeeeEEeecccchhHHhh-------------hhhhchhhhhhhhhhcccCCCC
Q 002709 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQR-------------RSKVTQEVQAEDIEKTMDNKDG 77 (890)
Q Consensus 11 rG~AfV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~r~~~~~r-------------~~~~~~~~~~~~~~~~~~~~~~ 77 (890)
+=||||.|..+++|.+|...++|..++||.|.|.++..+....+. -+...+......|+..++..+.
T Consensus 246 ~lfa~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~a 325 (725)
T KOG0110|consen 246 KLFAFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANA 325 (725)
T ss_pred HhhHHHhhhhhHHHHhhhhhccccccccceeeecCcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccH
Confidence 347999999999999999999999999999999999766533311 0111123345778877777776
Q ss_pred ccccccccchhhhhccc-----------------CCCCcccccccccccCccccccccCCCcEEEEcCCCccchHHHHHH
Q 002709 78 VISGAEKHSSKLLESGK-----------------TVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHR 140 (890)
Q Consensus 78 ~~~~~~~~~~~~~e~~~-----------------~~~~~k~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~~te~~L~~ 140 (890)
.+...+..+.+.++.-. ...+-+- .......+-..++.+.+..+.|+|+|||..+..++|..
T Consensus 326 va~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~-~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~ 404 (725)
T KOG0110|consen 326 VAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRR-FFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTE 404 (725)
T ss_pred HHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhh-hHHhhCcccccchhhhhhcceeeeccCccccccHHHHH
Confidence 65544443333322110 0000000 00011111123455777788999999999999999999
Q ss_pred HhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEecCC------------
Q 002709 141 LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLG------------ 208 (890)
Q Consensus 141 ~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v~~~~------------ 208 (890)
+|..||.|..|.+|. .|. -|+|.|..+.+|.+|+..|.+..+...++++....
T Consensus 405 ~F~~fG~i~rvllp~------------~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~ 469 (725)
T KOG0110|consen 405 AFLRFGEIGRVLLPP------------GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADD 469 (725)
T ss_pred HhhcccccceeecCc------------ccc---eeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccc
Confidence 999999999986631 232 48999999999999999999888776666431100
Q ss_pred -------C--------------------C-----------CCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcc
Q 002709 209 -------G--------------------E-----------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPH 250 (890)
Q Consensus 209 -------~--------------------~-----------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~ 250 (890)
. . ......++|||+||++..|.++|..+|..+|.|.+|.|..
T Consensus 470 ~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~k 549 (725)
T KOG0110|consen 470 LSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISK 549 (725)
T ss_pred cccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEec
Confidence 0 0 0011223499999999999999999999999999998876
Q ss_pred cCCC---CCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCC
Q 002709 251 NTDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDD 327 (890)
Q Consensus 251 ~~~~---g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (890)
.+.. -.+.|||||+|.+.++|+.|+..|+|..|.|+.|.|.++..+..-.. + +.
T Consensus 550 kkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~----------g------K~------- 606 (725)
T KOG0110|consen 550 KKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTV----------G------KK------- 606 (725)
T ss_pred cccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccc----------c------cc-------
Confidence 4421 13569999999999999999999999999999999999851110000 0 00
Q ss_pred CCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccc
Q 002709 328 DLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDV 407 (890)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 407 (890)
T Consensus 607 -------------------------------------------------------------------------------- 606 (725)
T KOG0110|consen 607 -------------------------------------------------------------------------------- 606 (725)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHH
Q 002709 408 SKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATA 487 (890)
Q Consensus 408 ~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~ 487 (890)
.......+.|+|+|||+..+..+|+.+|..||.|.+|+|+.....+.++|||||.|-++.+|.+
T Consensus 607 ----------------~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~n 670 (725)
T KOG0110|consen 607 ----------------KSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKN 670 (725)
T ss_pred ----------------cccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHH
Confidence 0001114689999999999999999999999999999998875666789999999999999999
Q ss_pred HHHHhccCCCCCeeecCeEEEEEEccChh
Q 002709 488 AVSASKTTSGLGIFLKGRQLTVLKALDKK 516 (890)
Q Consensus 488 Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~ 516 (890)
|+.+|. +.+|.||.|.+.||..-.
T Consensus 671 A~~al~-----STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 671 AFDALG-----STHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHhhc-----ccceechhhheehhccch
Confidence 999999 899999999999998643
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-29 Score=254.05 Aligned_cols=175 Identities=23% Similarity=0.355 Sum_probs=147.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEE
Q 002709 431 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 510 (890)
Q Consensus 431 ~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~ 510 (890)
..|||+.|...++-++|++.|.+||.|..++|++|..|++++|||||.|.+.++|+.||..|| |.+|++|.|+-.
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn-----GqWlG~R~IRTN 137 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN-----GQWLGRRTIRTN 137 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhC-----Ceeeccceeecc
Confidence 479999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EccChhhhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCccCeEEEeCC
Q 002709 511 KALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNL 590 (890)
Q Consensus 511 ~a~~k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NL 590 (890)
||..|..... ...+.-+.. -|. .....|++||.||
T Consensus 138 WATRKp~e~n--------------~~~ltfdeV------------------------------~NQ-ssp~NtsVY~G~I 172 (321)
T KOG0148|consen 138 WATRKPSEMN--------------GKPLTFDEV------------------------------YNQ-SSPDNTSVYVGNI 172 (321)
T ss_pred ccccCccccC--------------CCCccHHHH------------------------------hcc-CCCCCceEEeCCc
Confidence 9987752110 000000000 000 0113689999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 002709 591 PKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEH 670 (890)
Q Consensus 591 P~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~~~~~g~~~ 670 (890)
+..+||++|++.|+ +||.|..|+|+++ +||+||.|.++|.|..||..|||. .+-|
T Consensus 173 ~~~lte~~mr~~Fs---------~fG~I~EVRvFk~------------qGYaFVrF~tkEaAahAIv~mNnt-ei~G--- 227 (321)
T KOG0148|consen 173 ASGLTEDLMRQTFS---------PFGPIQEVRVFKD------------QGYAFVRFETKEAAAHAIVQMNNT-EIGG--- 227 (321)
T ss_pred CccccHHHHHHhcc---------cCCcceEEEEecc------------cceEEEEecchhhHHHHHHHhcCc-eeCc---
Confidence 99999999999999 6999999999976 899999999999999999999996 4443
Q ss_pred ccE-EEEeccc
Q 002709 671 RPI-VEFAVDN 680 (890)
Q Consensus 671 rli-V~~A~e~ 680 (890)
.++ |.|..|.
T Consensus 228 ~~VkCsWGKe~ 238 (321)
T KOG0148|consen 228 QLVRCSWGKEG 238 (321)
T ss_pred eEEEEeccccC
Confidence 555 9998764
No 28
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=4.7e-27 Score=259.15 Aligned_cols=172 Identities=26% Similarity=0.468 Sum_probs=155.9
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 002709 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (890)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~ 291 (890)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.+..+++++|||||+|.++++|.+||..|++..|.+++|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhccc
Q 002709 292 WAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTS 371 (890)
Q Consensus 292 ~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (890)
|+.+...
T Consensus 183 ~a~p~~~------------------------------------------------------------------------- 189 (346)
T TIGR01659 183 YARPGGE------------------------------------------------------------------------- 189 (346)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 9754210
Q ss_pred CCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHH
Q 002709 372 TTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRF 451 (890)
Q Consensus 372 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F 451 (890)
....++|||.|||.++|+++|+++|
T Consensus 190 -------------------------------------------------------~~~~~~lfV~nLp~~vtee~L~~~F 214 (346)
T TIGR01659 190 -------------------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIF 214 (346)
T ss_pred -------------------------------------------------------ccccceeEEeCCCCcccHHHHHHHH
Confidence 0012589999999999999999999
Q ss_pred hhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecC--eEEEEEEccChh
Q 002709 452 SAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKK 516 (890)
Q Consensus 452 ~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~G--r~l~V~~a~~k~ 516 (890)
+.||.|..|.|+++..++.++|||||+|.+.++|++||+.|| +..+.| ++|.|.+|....
T Consensus 215 ~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln-----g~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 215 GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN-----NVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCccCCCceeEEEEECCccc
Confidence 999999999999999999999999999999999999999999 888866 789999988653
No 29
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=8.4e-27 Score=257.18 Aligned_cols=172 Identities=24% Similarity=0.340 Sum_probs=151.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCe
Q 002709 426 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 505 (890)
Q Consensus 426 ~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr 505 (890)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.+..+++++|||||+|.+.++|.+||+.|+ +..|.++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~Ln-----G~~l~gr 177 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLN-----GITVRNK 177 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcC-----CCccCCc
Confidence 34457899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEccChhhhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCccCeE
Q 002709 506 QLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRL 585 (890)
Q Consensus 506 ~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L 585 (890)
+|.|.|+.+.... ...++|
T Consensus 178 ~i~V~~a~p~~~~-------------------------------------------------------------~~~~~l 196 (346)
T TIGR01659 178 RLKVSYARPGGES-------------------------------------------------------------IKDTNL 196 (346)
T ss_pred eeeeecccccccc-------------------------------------------------------------ccccee
Confidence 9999997542100 013679
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCC
Q 002709 586 VIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKT 665 (890)
Q Consensus 586 ~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~~~~ 665 (890)
||.|||..+|+++|+++|+ .||.|..|+|++|..++ .++|||||+|.++++|.+||+.||+. .+
T Consensus 197 fV~nLp~~vtee~L~~~F~---------~fG~V~~v~i~~d~~tg------~~kG~aFV~F~~~e~A~~Ai~~lng~-~~ 260 (346)
T TIGR01659 197 YVTNLPRTITDDQLDTIFG---------KYGQIVQKNILRDKLTG------TPRGVAFVRFNKREEAQEAISALNNV-IP 260 (346)
T ss_pred EEeCCCCcccHHHHHHHHH---------hcCCEEEEEEeecCCCC------ccceEEEEEECCHHHHHHHHHHhCCC-cc
Confidence 9999999999999999999 49999999999987666 88999999999999999999999996 34
Q ss_pred CCCCCccEEEEecc
Q 002709 666 FGPEHRPIVEFAVD 679 (890)
Q Consensus 666 ~g~~~rliV~~A~e 679 (890)
.+..+.|.|.||.+
T Consensus 261 ~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 261 EGGSQPLTVRLAEE 274 (346)
T ss_pred CCCceeEEEEECCc
Confidence 45445666999964
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=8.8e-26 Score=260.86 Aligned_cols=180 Identities=25% Similarity=0.427 Sum_probs=155.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002709 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (890)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~ 294 (890)
..++|||+|||+.+++++|+++|..||.|.+|.|+.+..+|+++|||||+|.+.++|.+|+..|||..|.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998542
Q ss_pred CCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCC
Q 002709 295 PKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTG 374 (890)
Q Consensus 295 pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 374 (890)
..... ... .. ..
T Consensus 186 ~~p~a----~~~---------------~~--------------------------------------------~~----- 197 (612)
T TIGR01645 186 NMPQA----QPI---------------ID--------------------------------------------MV----- 197 (612)
T ss_pred ccccc----ccc---------------cc--------------------------------------------cc-----
Confidence 11000 000 00 00
Q ss_pred CCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhC
Q 002709 375 SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF 454 (890)
Q Consensus 375 ~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~f 454 (890)
.......++|||+|||+++++++|+++|+.|
T Consensus 198 -------------------------------------------------~~~~~~~~rLfVgnLp~~vteedLk~lFs~F 228 (612)
T TIGR01645 198 -------------------------------------------------QEEAKKFNRIYVASVHPDLSETDIKSVFEAF 228 (612)
T ss_pred -------------------------------------------------cccccccceEEeecCCCCCCHHHHHHHHhhc
Confidence 0011123689999999999999999999999
Q ss_pred CCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChh
Q 002709 455 GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 516 (890)
Q Consensus 455 G~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~ 516 (890)
|.|.+|+|+.+..++.++|||||.|.+.++|.+|+..|| ++.|+|+.|.|.++.+..
T Consensus 229 G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amN-----g~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 229 GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-----LFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhC-----CCeeCCeEEEEEecCCCc
Confidence 999999999999899999999999999999999999999 999999999999998643
No 31
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.94 E-value=2.4e-24 Score=226.83 Aligned_cols=418 Identities=19% Similarity=0.253 Sum_probs=267.7
Q ss_pred CCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCC--ce
Q 002709 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ--KE 196 (890)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~--~~ 196 (890)
..++.|.++|||.+++|++|..++..||.|..+.+.. |++ .||++|.+.++|...+..+.. ..
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk-------------Gkn--QAflem~d~~sAvtmv~~y~~~~p~ 90 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK-------------GKN--QAFLEMADEESAVTMVNYYTSVTPV 90 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeec-------------cch--hhhhhhcchhhhhheeecccccCcc
Confidence 3678999999999999999999999999999988732 333 799999999999885443322 23
Q ss_pred ecCeEEEEecC----------------------------------------CCCCCCCCCcEEEEccCCCCCCHHHHHHh
Q 002709 197 IKGGTVWARQL----------------------------------------GGEGSKTQKWKLIIRNIPFKAKVNEIKDM 236 (890)
Q Consensus 197 i~g~~i~v~~~----------------------------------------~~~~~~~~~~~l~V~nLp~~~te~~L~~~ 236 (890)
+.|..|+|..+ +....+..--+++|.|+-+.++.+-|..+
T Consensus 91 lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqv 170 (492)
T KOG1190|consen 91 LRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQV 170 (492)
T ss_pred ccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHH
Confidence 45555555210 00011122347889999999999999999
Q ss_pred hccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee--CCeeEEEEeecCCCCcCCCCCCCCccccccC
Q 002709 237 FSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--GKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQ 314 (890)
Q Consensus 237 F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l--~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~ 314 (890)
|+.||.|..|.-.... +.-.|+|+|.+.+.|..|-..|+|..| +.+.|+|+|+.--..........
T Consensus 171 FS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndk-------- 238 (492)
T KOG1190|consen 171 FSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDK-------- 238 (492)
T ss_pred HhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccc--------
Confidence 9999999987655421 333499999999999999999999988 45678888876433322221110
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCC
Q 002709 315 NKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDS 394 (890)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~ 394 (890)
..|.. .. +-|......+....+...+.+.....| .+.+.....
T Consensus 239 -----SRDyT--------------np-------~LP~gd~~p~l~~~~~aa~~~~~~~~g----------~p~aip~~~- 281 (492)
T KOG1190|consen 239 -----SRDYT--------------NP-------DLPVGDGQPSLDQLMAAAFGSVPAVHG----------APLAIPSGA- 281 (492)
T ss_pred -----ccccc--------------CC-------CCCCCccccccchhhhccccccccccC----------CcccCCccc-
Confidence 00000 00 000000000000000001111000000 000000000
Q ss_pred chhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCC-CCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCc
Q 002709 395 DKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKG 473 (890)
Q Consensus 395 ~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~-~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g 473 (890)
+ .. .....+.. ....+..|.|.||.. .+|.+-|..+|+.||.|..|+|+.++ +.
T Consensus 282 --~-----------~a-----~~a~~~~~--~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd 336 (492)
T KOG1190|consen 282 --A-----------GA-----NAADGKIE--SPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KD 336 (492)
T ss_pred --h-----------hh-----cccccccc--cCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----Cc
Confidence 0 00 00000000 000157888998865 57999999999999999999998875 35
Q ss_pred eEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhccccccccchhhhccccccCCCCCCCC
Q 002709 474 TGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEG 553 (890)
Q Consensus 474 ~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~ 553 (890)
-|+|.|.+...|+-|++.|+ |..+.|++|+|.+++- .++.+..+|.-..+-...
T Consensus 337 ~ALIQmsd~~qAqLA~~hL~-----g~~l~gk~lrvt~SKH-------------------~~vqlp~egq~d~glT~d-- 390 (492)
T KOG1190|consen 337 NALIQMSDGQQAQLAMEHLE-----GHKLYGKKLRVTLSKH-------------------TNVQLPREGQEDQGLTKD-- 390 (492)
T ss_pred ceeeeecchhHHHHHHHHhh-----cceecCceEEEeeccC-------------------ccccCCCCCCcccccccc--
Confidence 79999999999999999999 9999999999999652 233344444322211111
Q ss_pred CChhhHHHHHHHHHHhhhccCCC-CCCCccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCcc
Q 002709 554 VSDDDMSKRQMLHEKKMTKLQSP-NFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKV 632 (890)
Q Consensus 554 ~s~~~~~~r~~~~~~~~~~~~~p-~~~~s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~ 632 (890)
...+.+. .-++...+++ +.+.+..+|++.|+|.++++++|+.+|.. +-|.|..-++.
T Consensus 391 y~~spLh------rfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~--------~g~~vkafkff-------- 448 (492)
T KOG1190|consen 391 YGNSPLH------RFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQE--------PGGQVKAFKFF-------- 448 (492)
T ss_pred CCCCchh------hccCcccccccccCCchhheeeccCCcccchhHHHHhhhc--------CCceEEeeeec--------
Confidence 1111111 1122223332 23345678999999999999999999996 34444444333
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccEEEEec
Q 002709 633 DTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAV 678 (890)
Q Consensus 633 ~~~~~srG~aFV~F~t~e~A~~Al~~Lng~~~~~g~~~rliV~~A~ 678 (890)
+..+-+|++.+.+.|+|..|+-.|+++ -.|.+..|.|.|+.
T Consensus 449 ---~kd~kmal~q~~sveeA~~ali~~hnh--~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 449 ---QKDRKMALPQLESVEEAIQALIDLHNH--YLGENHHLRVSFSK 489 (492)
T ss_pred ---CCCcceeecccCChhHhhhhccccccc--cCCCCceEEEEeec
Confidence 245789999999999999999999995 56777788899984
No 32
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1e-23 Score=218.33 Aligned_cols=178 Identities=28% Similarity=0.508 Sum_probs=152.8
Q ss_pred CcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002709 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (890)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~p 295 (890)
.++|||+.+.+.+.|+.|+..|.+||+|.+|.+..|+.|++.+|||||+|+-+|.|+.|++.|||..++||.|+|.. |
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr--P 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR--P 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC--C
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999973 2
Q ss_pred CCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCC
Q 002709 296 KNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGS 375 (890)
Q Consensus 296 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 375 (890)
.+. +.....- +....
T Consensus 191 sNm---------------------------------------------------pQAQpiI---D~vqe----------- 205 (544)
T KOG0124|consen 191 SNM---------------------------------------------------PQAQPII---DMVQE----------- 205 (544)
T ss_pred CCC---------------------------------------------------cccchHH---HHHHH-----------
Confidence 211 0000000 00000
Q ss_pred CCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCC
Q 002709 376 LPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 455 (890)
Q Consensus 376 ~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG 455 (890)
+......|||..+.++.+++||+.+|+.||
T Consensus 206 --------------------------------------------------eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG 235 (544)
T KOG0124|consen 206 --------------------------------------------------EAKKFNRIYVASVHPDLSETDIKSVFEAFG 235 (544)
T ss_pred --------------------------------------------------HHHhhheEEeeecCCCccHHHHHHHHHhhc
Confidence 011135899999999999999999999999
Q ss_pred CeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccCh
Q 002709 456 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 515 (890)
Q Consensus 456 ~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k 515 (890)
.|.+|.+.+.+..+.++|||||+|.+..+...|+..|| -+.|+|..|.|..+...
T Consensus 236 ~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN-----lFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 236 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-----LFDLGGQYLRVGKCVTP 290 (544)
T ss_pred ceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc-----hhhcccceEecccccCC
Confidence 99999999999888999999999999999999999999 89999999999987754
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.91 E-value=7.3e-25 Score=240.25 Aligned_cols=326 Identities=21% Similarity=0.316 Sum_probs=226.5
Q ss_pred CcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002709 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (890)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~p 295 (890)
.++||+--|+..+++.+|.++|+.+|.|..|.|+.|..+++++|.|||+|.+.+....||. |.|..+.|.+|.|.....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHH
Confidence 4688888899999999999999999999999999999999999999999999999999996 899999999999986532
Q ss_pred CCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCC
Q 002709 296 KNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGS 375 (890)
Q Consensus 296 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 375 (890)
.+.... ...+.+.
T Consensus 258 eknr~a---------------------------------------------------------------~~s~a~~---- 270 (549)
T KOG0147|consen 258 EKNRAA---------------------------------------------------------------NASPALQ---- 270 (549)
T ss_pred HHHHHH---------------------------------------------------------------hcccccc----
Confidence 110000 0000000
Q ss_pred CCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCC
Q 002709 376 LPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 455 (890)
Q Consensus 376 ~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG 455 (890)
..+ ...+...|||+||.+++++++|+.+|.+||
T Consensus 271 ----------~k~-------------------------------------~~~p~~rl~vgnLHfNite~~lr~ifepfg 303 (549)
T KOG0147|consen 271 ----------GKG-------------------------------------FTGPMRRLYVGNLHFNITEDMLRGIFEPFG 303 (549)
T ss_pred ----------ccc-------------------------------------cccchhhhhhcccccCchHHHHhhhccCcc
Confidence 000 011123499999999999999999999999
Q ss_pred CeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhccccccccc
Q 002709 456 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRN 535 (890)
Q Consensus 456 ~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~ 535 (890)
.|..|.+++|..+|.++|||||+|.+.++|.+|++.|| |+.|.|+.|.|.....+-...............+...
T Consensus 304 ~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~ln-----gfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~g 378 (549)
T KOG0147|consen 304 KIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLN-----GFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQG 378 (549)
T ss_pred cceeeeeccccccccccCcceEEEecHHHHHHHHHHhc-----cceecCceEEEEEeeeecccccccccccccchhhccc
Confidence 99999999999999999999999999999999999999 9999999999988665433221100000000001222
Q ss_pred hhhhccc------cccCCCCCCCCCChhh--------HHHHHHHHH-----HhhhccCCCCCCCccCeEEEeCC--CCCC
Q 002709 536 LYLAKEG------LILEGTPAAEGVSDDD--------MSKRQMLHE-----KKMTKLQSPNFHVSRTRLVIYNL--PKSM 594 (890)
Q Consensus 536 l~l~~eg------~~~~~~p~a~~~s~~~--------~~~r~~~~~-----~~~~~~~~p~~~~s~~~L~V~NL--P~~~ 594 (890)
+.+...| ...++.... ..+... +....+... ......-.|.+.++..||.++|+ |...
T Consensus 379 l~~~~~g~~Ql~~kla~~~~~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpste 457 (549)
T KOG0147|consen 379 LSLGSGGRNQLMAKLAEGKGRS-LPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTE 457 (549)
T ss_pred cccccccHHHHHHHHhccCCcc-ccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccc
Confidence 2222222 001111100 000000 000000000 00001113455566779999999 7778
Q ss_pred CHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccE-
Q 002709 595 TEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPI- 673 (890)
Q Consensus 595 teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~~~~~g~~~rli- 673 (890)
|+..+..-..+-|++.|.+ ||.|..|.+-. .+-|+.||.|.+.+.|..|+.+||| .||+ +++|
T Consensus 458 te~n~d~eI~edV~Eec~k-~g~v~hi~vd~-----------ns~g~VYvrc~s~~~A~~a~~alhg--rWF~--gr~It 521 (549)
T KOG0147|consen 458 TEPNWDQEIREDVIEECGK-HGKVCHIFVDK-----------NSAGCVYVRCPSAEAAGTAVKALHG--RWFA--GRMIT 521 (549)
T ss_pred cCcchhhHHHHHHHHHHHh-cCCeeEEEEcc-----------CCCceEEEecCcHHHHHHHHHHHhh--hhhc--cceeE
Confidence 8766666666666666654 99997765543 3459999999999999999999999 5998 6777
Q ss_pred EEEec
Q 002709 674 VEFAV 678 (890)
Q Consensus 674 V~~A~ 678 (890)
..|-.
T Consensus 522 a~~~~ 526 (549)
T KOG0147|consen 522 AKYLP 526 (549)
T ss_pred EEEee
Confidence 88874
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.91 E-value=1.4e-23 Score=230.29 Aligned_cols=328 Identities=22% Similarity=0.280 Sum_probs=220.1
Q ss_pred cccCCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCc
Q 002709 116 QKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK 195 (890)
Q Consensus 116 ~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~ 195 (890)
...++.||||+--|+...+..+|.++|+.+|.|..|.++.+.. ++.++|.|||+|.+.+....||. |.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~---------s~rskgi~Yvef~D~~sVp~aia-LsGq 243 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRN---------SRRSKGIAYVEFCDEQSVPLAIA-LSGQ 243 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecccc---------chhhcceeEEEEecccchhhHhh-hcCC
Confidence 4668899999999999999999999999999999999999874 78899999999999999999995 8999
Q ss_pred eecCeEEEEecCC--------------CCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEE
Q 002709 196 EIKGGTVWARQLG--------------GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFA 261 (890)
Q Consensus 196 ~i~g~~i~v~~~~--------------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~a 261 (890)
.+.|.+|.|.... +.+-..+...|||+||.+++++++|+.+|++||.|..|.++.+.++|.++||+
T Consensus 244 rllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfG 323 (549)
T KOG0147|consen 244 RLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFG 323 (549)
T ss_pred cccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcc
Confidence 9999999885421 11112233349999999999999999999999999999999999999999999
Q ss_pred EEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCC
Q 002709 262 FVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDS 341 (890)
Q Consensus 262 fV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (890)
||+|.+.++|.+|+..|||..|.|+.|+|......-...... ....+. +++ +..+-+.
T Consensus 324 fi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~----------~~~~d~---------D~~-d~~gl~~-- 381 (549)
T KOG0147|consen 324 FITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAA----------VTQFDF---------DED-DRQGLSL-- 381 (549)
T ss_pred eEEEecHHHHHHHHHHhccceecCceEEEEEeeeeccccccc----------cccccc---------chh-hcccccc--
Confidence 999999999999999999999999999998764321100000 000000 000 0000000
Q ss_pred CCccccCCCCCCCchhHHHHHHHHhhhcccCCC-CCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcc
Q 002709 342 NSSEKEDLPSNADFDEEVDIARKVLNKLTSTTG-SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSL 420 (890)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~ 420 (890)
+... ..+.. ..++...| .+++.... ........+.....+.......+.|...
T Consensus 382 ---------~~~g---~~Ql~----~kla~~~~~~~~s~~~~--~l~~~~~~~~~~~~~~~~~~~~~~p~~~-------- 435 (549)
T KOG0147|consen 382 ---------GSGG---RNQLM----AKLAEGKGRSLPSTAIS--ALLLLAKLASAAQFNGVVRVRSVDPADA-------- 435 (549)
T ss_pred ---------cccc---HHHHH----HHHhccCCccccchhhh--HHHhccccchHHhhcCCcCccccCcccc--------
Confidence 0000 11111 11111111 00110000 0000000000000000000011111100
Q ss_pred cccCCCCCCCCeEEEcCCCCC--CC--------HHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHH
Q 002709 421 KQTEGEDELQNTIFICNLPFD--LD--------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVS 490 (890)
Q Consensus 421 ~~~~~~~~~~~~l~V~NLp~~--~t--------ee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~ 490 (890)
.+.-..++.|+.|+|+=.. .| .++|.+-+.+||.|..|.|-.. +-|+.||.|.+.+.|..|+.
T Consensus 436 --~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~ 508 (549)
T KOG0147|consen 436 --SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVK 508 (549)
T ss_pred --ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHH
Confidence 0001134568888888332 22 3788899999999999866332 35999999999999999999
Q ss_pred HhccCCCCCeeecCeEEEEEEcc
Q 002709 491 ASKTTSGLGIFLKGRQLTVLKAL 513 (890)
Q Consensus 491 ~ln~~~~~g~~l~Gr~l~V~~a~ 513 (890)
+|| |.+|.|+.|...|-.
T Consensus 509 alh-----grWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 509 ALH-----GRWFAGRMITAKYLP 526 (549)
T ss_pred HHh-----hhhhccceeEEEEee
Confidence 999 999999999999843
No 35
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=6.6e-22 Score=204.98 Aligned_cols=169 Identities=14% Similarity=0.203 Sum_probs=153.1
Q ss_pred ccCCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 002709 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 196 (890)
Q Consensus 117 ~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~ 196 (890)
....-|+||||.|.....++.|+..|..||+|.+|.+..|. .+++.+|||||+|+-+|.|+.|++.|||..
T Consensus 109 ALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp---------~T~kHKgFAFVEYEvPEaAqLAlEqMNg~m 179 (544)
T KOG0124|consen 109 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP---------ATGKHKGFAFVEYEVPEAAQLALEQMNGQM 179 (544)
T ss_pred HHHHhHheeeeeeEEEechHHHHhhccCCCCcceeeccccc---------ccccccceEEEEEeCcHHHHHHHHHhcccc
Confidence 34567899999999999999999999999999999997776 489999999999999999999999999999
Q ss_pred ecCeEEEEecCCCCCC-----------CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEe
Q 002709 197 IKGGTVWARQLGGEGS-----------KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265 (890)
Q Consensus 197 i~g~~i~v~~~~~~~~-----------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F 265 (890)
++|+.|.|......+. .....+|||..+.++.+++||+..|+-||.|..|.+.+.+.++..+||+|++|
T Consensus 180 lGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy 259 (544)
T KOG0124|consen 180 LGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEY 259 (544)
T ss_pred ccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEe
Confidence 9999999964433222 12356999999999999999999999999999999999998889999999999
Q ss_pred cCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002709 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (890)
Q Consensus 266 ~~~e~A~~Al~~lng~~l~g~~I~V~~a~ 294 (890)
.+..+...|+..||-..|+|.-|+|-.+.
T Consensus 260 ~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 260 NNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred ccccchHHHhhhcchhhcccceEeccccc
Confidence 99999999999999999999999997764
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.89 E-value=4.9e-23 Score=196.08 Aligned_cols=172 Identities=30% Similarity=0.451 Sum_probs=154.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
.....+|||+||+..++++.|.++|-+.|+|..+.++++..+....|||||+|.++++|+.|++-||...|.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccC
Q 002709 293 AVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTST 372 (890)
Q Consensus 293 a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (890)
+.... +
T Consensus 86 as~~~---------------------~----------------------------------------------------- 91 (203)
T KOG0131|consen 86 ASAHQ---------------------K----------------------------------------------------- 91 (203)
T ss_pred ccccc---------------------c-----------------------------------------------------
Confidence 63100 0
Q ss_pred CCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHh
Q 002709 373 TGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFS 452 (890)
Q Consensus 373 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~ 452 (890)
....+.+|||+||.+.+++..|.+.|+
T Consensus 92 -----------------------------------------------------nl~vganlfvgNLd~~vDe~~L~dtFs 118 (203)
T KOG0131|consen 92 -----------------------------------------------------NLDVGANLFVGNLDPEVDEKLLYDTFS 118 (203)
T ss_pred -----------------------------------------------------cccccccccccccCcchhHHHHHHHHH
Confidence 011135899999999999999999999
Q ss_pred hCCCeEE-EEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChh
Q 002709 453 AFGEVVS-FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 516 (890)
Q Consensus 453 ~fG~I~~-v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~ 516 (890)
.||.|.. -.|++++.+|.++|||||.|.+.+.+.+|+.++| |..++.+++.|.++..+.
T Consensus 119 afG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n-----gq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 119 AFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN-----GQYLCNRPITVSYAFKKD 178 (203)
T ss_pred hccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc-----cchhcCCceEEEEEEecC
Confidence 9998776 4788999999999999999999999999999999 999999999999988653
No 37
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.88 E-value=1.8e-22 Score=192.23 Aligned_cols=169 Identities=22% Similarity=0.312 Sum_probs=152.7
Q ss_pred CCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecC
Q 002709 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (890)
Q Consensus 120 ~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g 199 (890)
...|||||||+..++++-|+++|-++|+|+.+.+|+++. +...+|||||+|.+.++|.-|++-||...|.|
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv---------~~~~qGygF~Ef~~eedadYAikiln~VkLYg 78 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRV---------TQKHQGYGFAEFRTEEDADYAIKILNMVKLYG 78 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhh---------cccccceeEEEEechhhhHHHHHHHHHHHhcC
Confidence 356999999999999999999999999999999999885 56789999999999999999999999999999
Q ss_pred eEEEEecCCCC-CCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEE-EEcccCCCCCcceEEEEEecCHHHHHHHHHH
Q 002709 200 GTVWARQLGGE-GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (890)
Q Consensus 200 ~~i~v~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v-~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~ 277 (890)
++|++...... ....-+.+|||+||.+.+++..|.+.|+.||.|... .|+++..||.++|||||.|.+.+.+.+|+..
T Consensus 79 rpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 79 RPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred ceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 99999776522 223345799999999999999999999999998753 7888999999999999999999999999999
Q ss_pred hCCceeCCeeEEEEeecCCC
Q 002709 278 FNGQKFGKRPIAVDWAVPKN 297 (890)
Q Consensus 278 lng~~l~g~~I~V~~a~pk~ 297 (890)
|||..++.++|.|.++..+.
T Consensus 159 ~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred hccchhcCCceEEEEEEecC
Confidence 99999999999999997553
No 38
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.88 E-value=4.6e-21 Score=203.08 Aligned_cols=242 Identities=16% Similarity=0.148 Sum_probs=196.7
Q ss_pred CCCcEEEEcCCCccchHHHHHHHhh-cCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 002709 119 RVARTVIIGGLLNADMAEEVHRLAG-SIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (890)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~-~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i 197 (890)
...|.+||.|||+++.+++|+++|+ +.|+|+.|.+..|. .|+++|+|.|+|.++|.+++|++.||...+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~----------~GK~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE----------SGKARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc----------CCCcCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 3457799999999999999999998 67899999998885 699999999999999999999999999999
Q ss_pred cCeEEEEecCCCCC------CCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHH
Q 002709 198 KGGTVWARQLGGEG------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271 (890)
Q Consensus 198 ~g~~i~v~~~~~~~------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A 271 (890)
.|+.|.|....... ......++|++++...+-..-|...|.--|.+.+-.+.+|. ++.+++..++.|.+.-.+
T Consensus 112 ~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~-Dr~sr~~~t~t~~~~~~~ 190 (608)
T KOG4212|consen 112 NGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDD-DRLSRRNNTNTMSNDYNN 190 (608)
T ss_pred cCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccc-cccccccCcccccccccc
Confidence 99999996543321 12345689999999999999999999888877666666664 578999999999988888
Q ss_pred HHHHHHhCCceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCC
Q 002709 272 ESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPS 351 (890)
Q Consensus 272 ~~Al~~lng~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (890)
..++..++.....-+++.+ |.
T Consensus 191 ~~~~~lfgl~~~Flr~~h~-f~---------------------------------------------------------- 211 (608)
T KOG4212|consen 191 SSNYNLFGLSASFLRSLHI-FS---------------------------------------------------------- 211 (608)
T ss_pred chhhhcccchhhhhhhccC-CC----------------------------------------------------------
Confidence 8777754433322222222 11
Q ss_pred CCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCC
Q 002709 352 NADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQN 431 (890)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 431 (890)
++...
T Consensus 212 ---------------------------------------------------------------------------pPl~~ 216 (608)
T KOG4212|consen 212 ---------------------------------------------------------------------------PPLHN 216 (608)
T ss_pred ---------------------------------------------------------------------------CCccc
Confidence 01124
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEE
Q 002709 432 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 511 (890)
Q Consensus 432 ~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~ 511 (890)
.+||.||.+.+....|.+.|.-.|.|.++.+-.++ .|.++|+|.++|..+-.|..||..++ +.-+..++..+..
T Consensus 217 k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~-----~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 217 KVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLD-----RQGLFDRRMTVRL 290 (608)
T ss_pred eeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhc-----cCCCccccceeec
Confidence 79999999999999999999999999999888887 56899999999999999999999998 6566667766665
No 39
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.87 E-value=5.1e-19 Score=184.56 Aligned_cols=436 Identities=18% Similarity=0.245 Sum_probs=272.4
Q ss_pred ccCCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHh--CC
Q 002709 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALL--HQ 194 (890)
Q Consensus 117 ~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~l--n~ 194 (890)
+...+-.|.|.+|-..+++.+|.+..+.||+|..+.++.. +..|.|+|++.+.|..++... +.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~---------------~r~alvefedi~~akn~Vnfaa~n~ 91 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH---------------KRQALVEFEDIEGAKNCVNFAADNQ 91 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc---------------cceeeeeeccccchhhheehhccCc
Confidence 4456778999999999999999999999999999887433 357999999999999998633 44
Q ss_pred ceecCeEEEEe--------cCCCCCCCCCCcEEEEc--cCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEE
Q 002709 195 KEIKGGTVWAR--------QLGGEGSKTQKWKLIIR--NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVK 264 (890)
Q Consensus 195 ~~i~g~~i~v~--------~~~~~~~~~~~~~l~V~--nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~ 264 (890)
..+.|...... +.+. ........|.+. |--+.+|-+-|..++...|.|.+|.|.+. +.-.|.|+
T Consensus 92 i~i~gq~Al~NyStsq~i~R~g~-es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVE 165 (494)
T KOG1456|consen 92 IYIAGQQALFNYSTSQCIERPGD-ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVE 165 (494)
T ss_pred ccccCchhhcccchhhhhccCCC-CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEe
Confidence 55556554332 2222 223334455544 44567899999999999999999999874 33469999
Q ss_pred ecCHHHHHHHHHHhCCcee--CCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCC
Q 002709 265 FTCKRDAESAIQKFNGQKF--GKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSN 342 (890)
Q Consensus 265 F~~~e~A~~Al~~lng~~l--~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (890)
|.+.+.|++|-..|||..| +...|+|+||.|............ +| ..+
T Consensus 166 Fdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~Dt-------------wD-----------------yTl 215 (494)
T KOG1456|consen 166 FDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDT-------------WD-----------------YTL 215 (494)
T ss_pred echhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCcc-------------cc-----------------ccC
Confidence 9999999999999999988 567899999998765443222110 00 011
Q ss_pred Cccc-cCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccC----CCCCCCchhhcccccccccccc--ccCCC
Q 002709 343 SSEK-EDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKG----NKEQDSDKTVNESAKVSDVSKL--NSSKS 415 (890)
Q Consensus 343 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~p~--~~~~~ 415 (890)
+.+. ...++...++.. +..+..........| ....+-.. . ....|. .....
T Consensus 216 p~~~~~~~~g~~~~~r~---------------~~p~~~~~~pss~~G~h~~y~sg~~~~------p-~~~~P~r~~~~~~ 273 (494)
T KOG1456|consen 216 PDLRGPYDPGRNHYDRQ---------------RQPAPLGYHPSSRGGGHSGYYSGDRHG------P-PHPPPSRYRDGYR 273 (494)
T ss_pred CCCCCCCCCCCCCCccc---------------cCCCccCCChhhcCCCCCCCcccccCC------C-CCCCCCCCccccc
Confidence 0000 000000000000 000000000000000 00000000 0 000000 00000
Q ss_pred CCCcccccCCCCCCCCeEEEcCCCCC-CCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhcc
Q 002709 416 KPKSLKQTEGEDELQNTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKT 494 (890)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~V~NLp~~-~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~ 494 (890)
.+ ..-.......+++.++|.+|... ++-+.|.++|..||.|..|+++..+ .|.|.|++.+..+.++|+..||
T Consensus 274 ~~-~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLn- 346 (494)
T KOG1456|consen 274 DG-RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLN- 346 (494)
T ss_pred cC-CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhc-
Confidence 00 00111134556899999999875 5678999999999999999988764 6899999999999999999999
Q ss_pred CCCCCeeecCeEEEEEEccChhhhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccC
Q 002709 495 TSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQ 574 (890)
Q Consensus 495 ~~~~g~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~ 574 (890)
+..+-|.+|.|..+.-.--. .-+.|+ +.+++|....++.+.-.+-.-.++..+.+++
T Consensus 347 ----n~~lfG~kl~v~~SkQ~~v~--------------~~~pfl-----LpDgSpSfKdys~SkNnRFssp~qAsKNrIq 403 (494)
T KOG1456|consen 347 ----NIPLFGGKLNVCVSKQNFVS--------------PVQPFL-----LPDGSPSFKDYSGSKNNRFSSPEQASKNRIQ 403 (494)
T ss_pred ----cCccccceEEEeeccccccc--------------cCCcee-----cCCCCcchhhcccccccccCChhHhhccccc
Confidence 89999999999885421100 001122 2334444333332221111112233334444
Q ss_pred CCCCCCccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHH
Q 002709 575 SPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALV 654 (890)
Q Consensus 575 ~p~~~~s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~ 654 (890)
.| +++|+..|.|..+||+.|..+|... --.-.+|+|+..+. ...--|.++|++.++|..
T Consensus 404 ~P-----s~vLHffNaP~~vtEe~l~~i~nek--------~v~~~svkvFp~ks--------erSssGllEfe~~s~Ave 462 (494)
T KOG1456|consen 404 PP-----SNVLHFFNAPLGVTEEQLIGICNEK--------DVPPTSVKVFPLKS--------ERSSSGLLEFENKSDAVE 462 (494)
T ss_pred CC-----cceeEEecCCCccCHHHHHHHhhhc--------CCCcceEEeecccc--------cccccceeeeehHHHHHH
Confidence 44 4889999999999999999999862 11245677774321 223578899999999999
Q ss_pred HHHHhcCCCCCCCCC-Ccc-EEEEe
Q 002709 655 ALRVLNNNPKTFGPE-HRP-IVEFA 677 (890)
Q Consensus 655 Al~~Lng~~~~~g~~-~rl-iV~~A 677 (890)
||..||..|. -+++ .-+ ++.|+
T Consensus 463 al~~~NH~pi-~~p~gs~PfilKlc 486 (494)
T KOG1456|consen 463 ALMKLNHYPI-EGPNGSFPFILKLC 486 (494)
T ss_pred HHHHhccccc-cCCCCCCCeeeeee
Confidence 9999999764 3332 333 35555
No 40
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2.5e-19 Score=179.25 Aligned_cols=226 Identities=22% Similarity=0.305 Sum_probs=151.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecC--eE
Q 002709 429 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQ 506 (890)
Q Consensus 429 ~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~G--r~ 506 (890)
..+.|||+-|...-.|+|++.+|.+||.|.+|.+.+.. +|.++|||||+|.+.-+|+.||..||+ ..++.| ..
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHg----SqTmpGASSS 92 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHG----SQTMPGASSS 92 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcc----cccCCCCccc
Confidence 46899999999999999999999999999999887775 889999999999999999999999994 355554 57
Q ss_pred EEEEEccChhhhchhhhhhhcccccccc----------------------------chhhhc-----------------c
Q 002709 507 LTVLKALDKKLAHDKEIDKSKNETNDHR----------------------------NLYLAK-----------------E 541 (890)
Q Consensus 507 l~V~~a~~k~~~~~~~~~~~~~~~~~~~----------------------------~l~l~~-----------------e 541 (890)
|.|.+|....++....+.....+-.... .-||.. .
T Consensus 93 LVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~an 172 (371)
T KOG0146|consen 93 LVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNAN 172 (371)
T ss_pred eEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhc
Confidence 9999988654433222111100000000 001110 0
Q ss_pred cccc--------------------CCCCCCC------------------------CC------Chh--hHHHHHHHH-HH
Q 002709 542 GLIL--------------------EGTPAAE------------------------GV------SDD--DMSKRQMLH-EK 568 (890)
Q Consensus 542 g~~~--------------------~~~p~a~------------------------~~------s~~--~~~~r~~~~-~~ 568 (890)
|.+. ++.+++. ++ ++. +........ ..
T Consensus 173 gl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~ 252 (371)
T KOG0146|consen 173 GLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQ 252 (371)
T ss_pred ccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHH
Confidence 0000 0000000 00 000 000000000 00
Q ss_pred --------h---hhccCC-C-------CCCCccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccC
Q 002709 569 --------K---MTKLQS-P-------NFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKK 629 (890)
Q Consensus 569 --------~---~~~~~~-p-------~~~~s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~ 629 (890)
. ...++. | -....+|+|||.+||.+..+.||..+|- +||.|.+.+++.|..|
T Consensus 253 Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~---------PFGhivSaKVFvDRAT 323 (371)
T KOG0146|consen 253 YAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFL---------PFGHIVSAKVFVDRAT 323 (371)
T ss_pred HhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhc---------cccceeeeeeeehhcc
Confidence 0 000010 1 1123579999999999999999999999 7999999999999877
Q ss_pred CccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccEEEEe
Q 002709 630 GKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFA 677 (890)
Q Consensus 630 ~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~~~~~g~~~rliV~~A 677 (890)
+ .|++||||.|+++..|+.||.+|||+. +|. +||.|++-
T Consensus 324 N------QSKCFGFVSfDNp~SaQaAIqAMNGFQ--IGM-KRLKVQLK 362 (371)
T KOG0146|consen 324 N------QSKCFGFVSFDNPASAQAAIQAMNGFQ--IGM-KRLKVQLK 362 (371)
T ss_pred c------cccceeeEecCCchhHHHHHHHhcchh--hhh-hhhhhhhc
Confidence 6 899999999999999999999999984 354 78877653
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=8.5e-19 Score=175.50 Aligned_cols=298 Identities=20% Similarity=0.250 Sum_probs=176.4
Q ss_pred eEEEEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 002709 200 GTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (890)
Q Consensus 200 ~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~ln 279 (890)
+.|.|.+...+.+....+.|||+-|...-.|+|++.+|..||.|.+|.+.+.. +|.++|+|||.|.+..+|..||..|+
T Consensus 3 rpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLH 81 (371)
T KOG0146|consen 3 RPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALH 81 (371)
T ss_pred CCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhc
Confidence 45666666666666688899999999999999999999999999999999865 68899999999999999999999999
Q ss_pred Ccee---CCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCC---Cc----cccC-
Q 002709 280 GQKF---GKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSN---SS----EKED- 348 (890)
Q Consensus 280 g~~l---~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~- 348 (890)
|..- ....|.|.|+...+.+........+...+.-+.-.- .- +--..... .. ....
T Consensus 82 gSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l--~~-----------g~~~ay~qalmQqQa~~~at~~ 148 (371)
T KOG0146|consen 82 GSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLAL--PF-----------GAYGAYAQALMQQQAALLATVA 148 (371)
T ss_pred ccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCcccc--cc-----------chhHHHHHHHHHHHHHHHHhhc
Confidence 9864 346788998864432211110000000111100000 00 00000000 00 0000
Q ss_pred CCCCCCchhH----HH-HHHHHhh-----hcccCCCCC-CCCC-----CchhhccCCCCC------CCchhhcc------
Q 002709 349 LPSNADFDEE----VD-IARKVLN-----KLTSTTGSL-PSLS-----DDSALVKGNKEQ------DSDKTVNE------ 400 (890)
Q Consensus 349 ~~~~~~~~~~----~~-~~~~~~~-----~~~~~~g~~-p~~~-----~~~~~~~~~~~~------~~~~~~~~------ 400 (890)
.+.-...... .+ .+.-..+ .+++..|.. |+.. ..-..+.+..+. .......+
T Consensus 149 ~~~L~p~~~~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng 228 (371)
T KOG0146|consen 149 GPYLSPMAAFAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANG 228 (371)
T ss_pred ccccChhhhhHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcC
Confidence 0000000000 00 0000000 111100100 0000 000001110000 00000000
Q ss_pred ---------------cccccc------cccc-----ccCCCCCCc-ccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhh
Q 002709 401 ---------------SAKVSD------VSKL-----NSSKSKPKS-LKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSA 453 (890)
Q Consensus 401 ---------------~e~~~~------~~p~-----~~~~~~~~~-~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~ 453 (890)
.....+ .+|. ......++. ......+..++|+|||..||....+.||...|-+
T Consensus 229 ~~pypaQsp~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~P 308 (371)
T KOG0146|consen 229 LHPYPAQSPTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLP 308 (371)
T ss_pred CccCCCCCccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcc
Confidence 000000 0111 011111111 1122346778999999999999999999999999
Q ss_pred CCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChh
Q 002709 454 FGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 516 (890)
Q Consensus 454 fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~ 516 (890)
||.|++.++..|+.|..+++||||.|+++.+|+.||.+|| |+.|+=++|+|.+..+|+
T Consensus 309 FGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMN-----GFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 309 FGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN-----GFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred ccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhc-----chhhhhhhhhhhhcCccc
Confidence 9999999999999999999999999999999999999999 999999999999987775
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.79 E-value=2.6e-19 Score=181.87 Aligned_cols=147 Identities=21% Similarity=0.278 Sum_probs=135.1
Q ss_pred EEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 002709 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (890)
Q Consensus 123 tv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i 202 (890)
.|||||||..+++.+|+.+|.+||+|++|.|+. .||||+.++...|..||..||+..|+|..|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-----------------NYgFVHiEdktaaedairNLhgYtLhg~nI 66 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK-----------------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNI 66 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec-----------------ccceEEeecccccHHHHhhcccceecceEE
Confidence 489999999999999999999999999999964 399999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q 002709 203 WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (890)
Q Consensus 203 ~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~ 282 (890)
.|..+... ....++|+|+||.+.++..+|+..|.+||+|..|.|++ +|+||.|...++|..|+..|++..
T Consensus 67 nVeaSksK--sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 67 NVEASKSK--SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred EEEecccc--CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccc
Confidence 99765432 34567899999999999999999999999999999976 489999999999999999999999
Q ss_pred eCCeeEEEEeecCC
Q 002709 283 FGKRPIAVDWAVPK 296 (890)
Q Consensus 283 l~g~~I~V~~a~pk 296 (890)
|.|++++|..+...
T Consensus 137 ~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSR 150 (346)
T ss_pred cccceeeeeeeccc
Confidence 99999999998543
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.79 E-value=2.8e-19 Score=181.61 Aligned_cols=148 Identities=26% Similarity=0.417 Sum_probs=136.0
Q ss_pred EEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 002709 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (890)
Q Consensus 218 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk~ 297 (890)
.|||+|||..+++.+|+.+|++||.|+.|.|+.+ ||||..++...|..||..|||..|.|..|.|+-+..+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 6999999999999999999999999999999864 89999999999999999999999999999999775331
Q ss_pred CcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCC
Q 002709 298 IYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 377 (890)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p 377 (890)
.
T Consensus 76 k------------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 76 K------------------------------------------------------------------------------- 76 (346)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCCCe
Q 002709 378 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 457 (890)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I 457 (890)
..++|+|+||.+.++..+|+..|.+||+|
T Consensus 77 ---------------------------------------------------~stkl~vgNis~tctn~ElRa~fe~ygpv 105 (346)
T KOG0109|consen 77 ---------------------------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPV 105 (346)
T ss_pred ---------------------------------------------------CccccccCCCCccccCHHHhhhhcccCCc
Confidence 13689999999999999999999999999
Q ss_pred EEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChh
Q 002709 458 VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 516 (890)
Q Consensus 458 ~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~ 516 (890)
..|.|+ ++|+||.|.-.++|..|+..|+ +..|.|++|+|..+.++-
T Consensus 106 iecdiv--------kdy~fvh~d~~eda~~air~l~-----~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 106 IECDIV--------KDYAFVHFDRAEDAVEAIRGLD-----NTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred eeeeee--------cceeEEEEeeccchHHHHhccc-----ccccccceeeeeeecccc
Confidence 999987 5699999999999999999999 999999999999987653
No 44
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.79 E-value=8.1e-17 Score=175.11 Aligned_cols=459 Identities=16% Similarity=0.139 Sum_probs=248.8
Q ss_pred CCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecC
Q 002709 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (890)
Q Consensus 120 ~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g 199 (890)
..-.|-+.+||+++|++||+++|+.+ .|..+.+++. +|+..|-|||+|.+.+++.+|++. +...+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~-----------~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~ 75 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR-----------NGRPSGEAYVEFTSEEDVEKALKK-DRESMGH 75 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc-----------CCCcCcceEEEeechHHHHHHHHh-hHHHhCC
Confidence 44567889999999999999999999 4666666443 699999999999999999999984 6666666
Q ss_pred eEEEEecC-----------CCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEE-EEEcccCCCCCcceEEEEEecC
Q 002709 200 GTVWARQL-----------GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN-VYIPHNTDTGLSKGFAFVKFTC 267 (890)
Q Consensus 200 ~~i~v~~~-----------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~-v~i~~~~~~g~~~g~afV~F~~ 267 (890)
+-|.|-.. ...........|-+++||+.||++||.++|+..-.|.. |.++.+. .+++.|-|||+|++
T Consensus 76 RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~s 154 (510)
T KOG4211|consen 76 RYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFES 154 (510)
T ss_pred ceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecC
Confidence 66655322 22222345678999999999999999999998766655 4455554 47799999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCcccc
Q 002709 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKE 347 (890)
Q Consensus 268 ~e~A~~Al~~lng~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (890)
.+.|+.|+.. |...|..+-|.|-.+............. ..... ...-+ . .+...-....
T Consensus 155 qe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~--~~~~r-----pGpy~-~---------~~a~Rg~~d~--- 213 (510)
T KOG4211|consen 155 QESAEIALGR-HRENIGHRYIEVFRSSRAEVKRAAGPGD--GRVGR-----PGPYD-R---------PGAPRGGYDY--- 213 (510)
T ss_pred HHHHHHHHHH-HHHhhccceEEeehhHHHHHHhhccccc--cccCC-----CCccc-c---------ccCCcccccc---
Confidence 9999999996 8888999999987654322211110000 00000 00000 0 0000000000
Q ss_pred CCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCC
Q 002709 348 DLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGED 427 (890)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~ 427 (890)
........+...-. ...... .+-.+..........+..+. ++... .|..+........-....-.
T Consensus 214 ~~~~~~~~~~~r~g--~~~~g~---~g~~~~~~~~d~~~~gs~~~---------~~~~~-~~~~~g~~~~g~~g~~~~~~ 278 (510)
T KOG4211|consen 214 GQGRDPGRNATRYG--AGGEGY---YGFSRYPSLQDYGNFGSYGG---------GRDPN-YPVSSGPHRQGGAGDYGNGG 278 (510)
T ss_pred ccccCCCccccccc--cccCCc---cccccCcccccccccccccc---------ccccc-cCCCCCcccCCCcccccCCC
Confidence 00000000000000 000000 00000000000000000000 00000 00000000000000001112
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEE
Q 002709 428 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 507 (890)
Q Consensus 428 ~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l 507 (890)
..+..++.++||+..++.++.++|+..-.+ .|.|-.. .+|+..|-|+|+|.+.++|..|+..- +..+..+.|
T Consensus 279 ~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Amskd------~anm~hrYV 350 (510)
T KOG4211|consen 279 PGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAMGKD------GANMGHRYV 350 (510)
T ss_pred CCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhhccC------CcccCccee
Confidence 223789999999999999999999986554 6666555 48999999999999999999998653 466666666
Q ss_pred EEEEccChhhhchhhhhhhc---ccccccc-chhhhccccccCC------CCCCCCCChhhHHHHHHHHHHhhhccCCCC
Q 002709 508 TVLKALDKKLAHDKEIDKSK---NETNDHR-NLYLAKEGLILEG------TPAAEGVSDDDMSKRQMLHEKKMTKLQSPN 577 (890)
Q Consensus 508 ~V~~a~~k~~~~~~~~~~~~---~~~~~~~-~l~l~~eg~~~~~------~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~ 577 (890)
.+..-- ...+......... ....+.. ....+. +....+ ...+.+......... .-.....|.
T Consensus 351 ElFln~-~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~-g~~~gG~~g~~~~~~~~G~~~~~~~~~------~~~Gy~g~~ 422 (510)
T KOG4211|consen 351 ELFLNG-APGASGGGGPSGPGGVGSSGDRNGGGGYAS-GSYGGGGNGGGGRGSPYGRPSDGYSSP------GGGGYSGPR 422 (510)
T ss_pred eecccC-CcccccCccCCCCCCccccccccCCCCccc-cccccCCCCCccccCCCCCCcccccCC------CCCCCcCcc
Confidence 655421 1000000000000 0000000 000000 000000 000000000000000 000000000
Q ss_pred -----CCCccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHH
Q 002709 578 -----FHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHA 652 (890)
Q Consensus 578 -----~~~s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A 652 (890)
.....-+|..+.+|+-.++.++.++|. +++. -+|.|.+|... ...|-|-|.|.+.+++
T Consensus 423 ~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~---------~~~~-a~~~~~yd~~~-------~~~~~a~~~~~~~~~~ 485 (510)
T KOG4211|consen 423 GYGRGPQNEHFVIRMRGAPFRASEADVYDFFH---------PIRP-AQVELLYDHQF-------QRSGDARVIFYNRKDY 485 (510)
T ss_pred cCCCCccccccccCcCCCCccccccchhhccc---------ccCc-ccccccccccc-------cccCceeEEEechhhh
Confidence 001123688899999999999999998 4554 46888888643 2378999999999999
Q ss_pred HHHHHHhcC
Q 002709 653 LVALRVLNN 661 (890)
Q Consensus 653 ~~Al~~Lng 661 (890)
+.||..-..
T Consensus 486 q~a~~~~~~ 494 (510)
T KOG4211|consen 486 QDALMKDKQ 494 (510)
T ss_pred HHHHHhhhh
Confidence 999865443
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.78 E-value=1.5e-17 Score=176.52 Aligned_cols=212 Identities=20% Similarity=0.186 Sum_probs=169.1
Q ss_pred CCCCCccceEEEEecCHHHHHHHHHhhCCceeCCeeeEEeecccchhHHhhhhhhchhhhhhhhhhcccCCCCccccccc
Q 002709 5 KGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEK 84 (890)
Q Consensus 5 k~tg~srG~AfV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~r~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (890)
...|++||+|.|+|.++|.+++|++.||...+.||+|.|+--. -. ++..
T Consensus 80 D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~-d~---q~~~--------------------------- 128 (608)
T KOG4212|consen 80 DESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH-DE---QRDQ--------------------------- 128 (608)
T ss_pred ccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC-ch---hhhh---------------------------
Confidence 4789999999999999999999999999999999999987651 11 0000
Q ss_pred cchhhhhcccCCCCcccccccccccCccccccccCCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhcc
Q 002709 85 HSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHG 164 (890)
Q Consensus 85 ~~~~~~e~~~~~~~~k~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~ 164 (890)
.....+...++|++++....-..-|...|+--|.+..-.+..|+
T Consensus 129 -----------------------------~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~------- 172 (608)
T KOG4212|consen 129 -----------------------------YGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDD------- 172 (608)
T ss_pred -----------------------------hhheeeccCcccccCcceecccccccccCCCCccccCCCCcccc-------
Confidence 11233566788999999988888898899888877766666664
Q ss_pred ccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeE
Q 002709 165 LAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW 244 (890)
Q Consensus 165 ~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~ 244 (890)
++.+++..+++|...-.+..++..++......+.+.+ -.++....+||.||.+.+....|.+.|.-.|.|.
T Consensus 173 ---Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~------f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~ 243 (608)
T KOG4212|consen 173 ---DRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHI------FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQ 243 (608)
T ss_pred ---cccccccCccccccccccchhhhcccchhhhhhhccC------CCCCccceeeeeccccccchHHHHHHhccceeee
Confidence 5888999999999888888877755544433333332 1344556899999999999999999999999999
Q ss_pred EEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002709 245 NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (890)
Q Consensus 245 ~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a 293 (890)
.|.+-.|+. |.++|||.++|..+-+|..||..|++.-+..++..+..-
T Consensus 244 ~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 244 SVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred eeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 999888875 689999999999999999999999987777777777653
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.76 E-value=6.7e-17 Score=171.05 Aligned_cols=273 Identities=20% Similarity=0.240 Sum_probs=195.8
Q ss_pred CCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCcc-EEEEEeCCHHHHHHHHHHhCCceec
Q 002709 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMD-ASAVLYTTVKSACASVALLHQKEIK 198 (890)
Q Consensus 120 ~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g-~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (890)
.--.++|+|+-+.++.+-|+.+|+.||.|+.|..+. ++.+ .|+|+|.+.+.|..|...|+|..|.
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~--------------Knn~FQALvQy~d~~sAq~AK~aLdGqnIy 214 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT--------------KNNGFQALVQYTDAVSAQAAKLALDGQNIY 214 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEe--------------cccchhhhhhccchhhHHHHHHhccCCccc
Confidence 445688999999999999999999999999887632 2233 4899999999999999999999998
Q ss_pred CeEEEEec--------------------------CC----------------------CCC---------------CCC-
Q 002709 199 GGTVWARQ--------------------------LG----------------------GEG---------------SKT- 214 (890)
Q Consensus 199 g~~i~v~~--------------------------~~----------------------~~~---------------~~~- 214 (890)
+.++.++- .+ .+. ...
T Consensus 215 ngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~ 294 (492)
T KOG1190|consen 215 NGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESP 294 (492)
T ss_pred CceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccC
Confidence 77664321 00 000 001
Q ss_pred -CCcEEEEccCC-CCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 215 -QKWKLIIRNIP-FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 215 -~~~~l~V~nLp-~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
....|.|.||. ..+|.+-|..+|+-||.|.+|+|..++ +-.|+|+|.+...|+.|+..|+|..|.|++|+|.+
T Consensus 295 ~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~ 369 (492)
T KOG1190|consen 295 SANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTL 369 (492)
T ss_pred CCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEee
Confidence 14678899885 569999999999999999999999864 35699999999999999999999999999999999
Q ss_pred ecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccC
Q 002709 293 AVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTST 372 (890)
Q Consensus 293 a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (890)
++............ +.+ .+ .++... .+...
T Consensus 370 SKH~~vqlp~egq~---------------d~g-------------------------lT-~dy~~s------pLhrf--- 399 (492)
T KOG1190|consen 370 SKHTNVQLPREGQE---------------DQG-------------------------LT-KDYGNS------PLHRF--- 399 (492)
T ss_pred ccCccccCCCCCCc---------------ccc-------------------------cc-ccCCCC------chhhc---
Confidence 87654322211000 000 00 000000 00000
Q ss_pred CCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHh
Q 002709 373 TGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFS 452 (890)
Q Consensus 373 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~ 452 (890)
..|-...+ ..-.++..+|.+.|+|.++++++|+++|.
T Consensus 400 ------------------------------------------kkpgsKN~-~ni~PpsatlHlsnip~svsee~lk~~f~ 436 (492)
T KOG1190|consen 400 ------------------------------------------KKPGSKNY-QNIFPPSATLHLSNIPPSVSEEDLKNLFQ 436 (492)
T ss_pred ------------------------------------------cCcccccc-cccCCchhheeeccCCcccchhHHHHhhh
Confidence 00000000 00123457999999999999999999999
Q ss_pred hCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecC-eEEEEEEcc
Q 002709 453 AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG-RQLTVLKAL 513 (890)
Q Consensus 453 ~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~G-r~l~V~~a~ 513 (890)
.-|........ .+..+.+|++.+.+.|+|..|+-.++ ...+++ +.|+|.+++
T Consensus 437 ~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~h-----nh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 437 EPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLH-----NHYLGENHHLRVSFSK 489 (492)
T ss_pred cCCceEEeeee----cCCCcceeecccCChhHhhhhccccc-----cccCCCCceEEEEeec
Confidence 98877665333 23457799999999999999999998 677754 589999865
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.75 E-value=9.2e-17 Score=174.68 Aligned_cols=300 Identities=21% Similarity=0.273 Sum_probs=186.8
Q ss_pred CCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002709 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (890)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a 293 (890)
.....|-+++|||++|+++|.++|+.++ |..+.+++ .+|+..|-|||+|.+.+++.+|+++ +...+..+-|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEcc
Confidence 3445788999999999999999999985 67777766 3699999999999999999999994 888899999999766
Q ss_pred cCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCC
Q 002709 294 VPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTT 373 (890)
Q Consensus 294 ~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (890)
.+...- .++.. .
T Consensus 84 ~~~e~d----------------------------------------------------------------~~~~~----~ 95 (510)
T KOG4211|consen 84 GGAEAD----------------------------------------------------------------WVMRP----G 95 (510)
T ss_pred CCcccc----------------------------------------------------------------ccccC----C
Confidence 433110 00000 0
Q ss_pred CCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhh
Q 002709 374 GSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSA 453 (890)
Q Consensus 374 g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~ 453 (890)
| |. .......|.+++||+.||++||.+||+.
T Consensus 96 g----------------------------------~~---------------s~~~d~vVRLRGLPfscte~dI~~FFaG 126 (510)
T KOG4211|consen 96 G----------------------------------PN---------------SSANDGVVRLRGLPFSCTEEDIVEFFAG 126 (510)
T ss_pred C----------------------------------CC---------------CCCCCceEEecCCCccCcHHHHHHHhcC
Confidence 0 00 0012358999999999999999999998
Q ss_pred CCCeEE-EEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhccc-c-
Q 002709 454 FGEVVS-FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNE-T- 530 (890)
Q Consensus 454 fG~I~~-v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~~-~- 530 (890)
.-.|.. +.++.+ ..+++.|-|||+|.+.+.|+.|+.... ..|+-|.|.|..+.-.+...........-. .
T Consensus 127 L~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~rhr------e~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpG 199 (510)
T KOG4211|consen 127 LEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGRHR------ENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPG 199 (510)
T ss_pred Ccccccceeeecc-CCCCcccceEEEecCHHHHHHHHHHHH------HhhccceEEeehhHHHHHHhhccccccccCCCC
Confidence 766655 334444 467799999999999999999998765 778889999987654322111100000000 0
Q ss_pred -----ccccch--hhh---------ccccccCCC------C--CC-CCCChhhHHHHHHHHHH-hhhccCCC----CCCC
Q 002709 531 -----NDHRNL--YLA---------KEGLILEGT------P--AA-EGVSDDDMSKRQMLHEK-KMTKLQSP----NFHV 580 (890)
Q Consensus 531 -----~~~~~l--~l~---------~eg~~~~~~------p--~a-~~~s~~~~~~r~~~~~~-~~~~~~~p----~~~~ 580 (890)
...+.. +.. .-+....+. + .. .........+....... .-.....+ +...
T Consensus 200 py~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~ 279 (510)
T KOG4211|consen 200 PYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGP 279 (510)
T ss_pred ccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCC
Confidence 000000 000 000000000 0 00 00000000000000000 00001111 1111
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Q 002709 581 SRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRV 658 (890)
Q Consensus 581 s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~ 658 (890)
....++.+.||+..++.++..+|+. .....|.|-..+ .++..|-|+|+|.|+++|..||-.
T Consensus 280 ~g~fv~MRGlpy~a~~~di~nfFsp----------l~p~~v~i~ig~-------dGr~TGEAdveF~t~edav~Amsk 340 (510)
T KOG4211|consen 280 GGHFVHMRGLPYDATENDIANFFSP----------LNPYRVHIEIGP-------DGRATGEADVEFATGEDAVGAMGK 340 (510)
T ss_pred CCceeeecCCCccCCCcchhhhcCC----------CCceeEEEEeCC-------CCccCCcceeecccchhhHhhhcc
Confidence 2367999999999999999999993 333356665432 358899999999999999998744
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.68 E-value=1.5e-16 Score=170.56 Aligned_cols=175 Identities=25% Similarity=0.457 Sum_probs=151.5
Q ss_pred CCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002709 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (890)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~ 294 (890)
..+.|||++|++.++++.|++.|.+||.|..|.+++++.+++++||+||.|.+++....+|.. .-..|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 567899999999999999999999999999999999999999999999999999999988874 5677899999988876
Q ss_pred CCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCC
Q 002709 295 PKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTG 374 (890)
Q Consensus 295 pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 374 (890)
|........
T Consensus 84 ~r~~~~~~~----------------------------------------------------------------------- 92 (311)
T KOG4205|consen 84 SREDQTKVG----------------------------------------------------------------------- 92 (311)
T ss_pred Ccccccccc-----------------------------------------------------------------------
Confidence 653211000
Q ss_pred CCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhC
Q 002709 375 SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF 454 (890)
Q Consensus 375 ~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~f 454 (890)
.......|||++||.++++++|+++|.+|
T Consensus 93 ---------------------------------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~ 121 (311)
T KOG4205|consen 93 ---------------------------------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQF 121 (311)
T ss_pred ---------------------------------------------------cccceeEEEecCcCCCCchHHHhhhhhcc
Confidence 00013589999999999999999999999
Q ss_pred CCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhh
Q 002709 455 GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 518 (890)
Q Consensus 455 G~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~ 518 (890)
|.|..+.++.|..+.+++||+||.|.+.+...+++.. . .+.|.|+.+.|..|.++...
T Consensus 122 g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~-----f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 122 GKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-K-----FHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ceeEeeEEeecccccccccceeeEeccccccceeccc-c-----eeeecCceeeEeeccchhhc
Confidence 9999999999999999999999999999999988764 3 68999999999999998643
No 49
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.66 E-value=2.6e-16 Score=168.82 Aligned_cols=171 Identities=20% Similarity=0.308 Sum_probs=148.7
Q ss_pred CCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecC
Q 002709 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (890)
Q Consensus 120 ~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g 199 (890)
..+.||||+|+++++++.|++.|+.||+|..|.++++.. +++++||+||.|.+++....++.. ..+.|.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~---------t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dg 74 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPS---------TGRSRGFGFVTFATPEGVDAVLNA-RTHKLDG 74 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCC---------CCCcccccceecCCCcchheeecc-cccccCC
Confidence 578999999999999999999999999999999999874 799999999999999999888774 5566788
Q ss_pred eEEEEecCCCCC--C----CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHH
Q 002709 200 GTVWARQLGGEG--S----KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273 (890)
Q Consensus 200 ~~i~v~~~~~~~--~----~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~ 273 (890)
+.|.+...-... . ......|||++||.+++++++++.|.+||.|..+.++.|..+.+.+||+||.|.+++.+.+
T Consensus 75 r~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 75 RSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred ccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 887664322111 1 1234589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeCCeeEEEEeecCCCCcCC
Q 002709 274 AIQKFNGQKFGKRPIAVDWAVPKNIYSS 301 (890)
Q Consensus 274 Al~~lng~~l~g~~I~V~~a~pk~~~~~ 301 (890)
++. .....|+|+.+.|..|.|+.....
T Consensus 155 v~~-~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 155 VTL-QKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ecc-cceeeecCceeeEeeccchhhccc
Confidence 998 588999999999999999876443
No 50
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=1.4e-15 Score=170.49 Aligned_cols=273 Identities=19% Similarity=0.260 Sum_probs=199.8
Q ss_pred cccCCCcEEEEcCCCccchHHHHHHHhhcC-----------C-CeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHH
Q 002709 116 QKQRVARTVIIGGLLNADMAEEVHRLAGSI-----------G-TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVK 183 (890)
Q Consensus 116 ~~~~~~rtv~V~nLp~~~te~~L~~~F~~~-----------G-~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e 183 (890)
.....++.+||+++|+.+.++.+..+|..- | .+..+.+ .....|||++|.+.+
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~---------------n~~~nfa~ie~~s~~ 234 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL---------------NLEKNFAFIEFRSIS 234 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee---------------cccccceeEEecCCC
Confidence 344667899999999999999999988854 3 3666665 344579999999999
Q ss_pred HHHHHHHHhCCceecCeEEEEecCCC-----------------------CCCCCCCcEEEEccCCCCCCHHHHHHhhccC
Q 002709 184 SACASVALLHQKEIKGGTVWARQLGG-----------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPV 240 (890)
Q Consensus 184 ~A~~Ai~~ln~~~i~g~~i~v~~~~~-----------------------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~ 240 (890)
+|..|+. +++..+.|..+.+..... .........+||++||..+++.++.++...|
T Consensus 235 ~at~~~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~f 313 (500)
T KOG0120|consen 235 EATEAMA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSF 313 (500)
T ss_pred chhhhhc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhc
Confidence 9999987 688888888776643211 0112345689999999999999999999999
Q ss_pred CCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCC
Q 002709 241 GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGN 320 (890)
Q Consensus 241 G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~ 320 (890)
|.+....++.+..+|.++||||.+|.++.....|+..|||..+++..|.|..|.+...........
T Consensus 314 g~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~-------------- 379 (500)
T KOG0120|consen 314 GPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNI-------------- 379 (500)
T ss_pred ccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCc--------------
Confidence 999999999999999999999999999999999999999999999999999886542211100000
Q ss_pred CCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhcc
Q 002709 321 SDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNE 400 (890)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 400 (890)
+. ..+. .+....
T Consensus 380 ~~------------------------------~~~~--------~i~~~~------------------------------ 391 (500)
T KOG0120|consen 380 SQ------------------------------SQVP--------GIPLLM------------------------------ 391 (500)
T ss_pred cc------------------------------cccc--------cchhhh------------------------------
Confidence 00 0000 000000
Q ss_pred ccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCC--CCC-C-------HHHHHHHHhhCCCeEEEEEeecCCC--
Q 002709 401 SAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLP--FDL-D-------NEEVKQRFSAFGEVVSFVPVLHQVT-- 468 (890)
Q Consensus 401 ~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp--~~~-t-------ee~L~~~F~~fG~I~~v~i~~~~~~-- 468 (890)
......+...|.+.|+= .+. . -|+|+.-|+.||.|.+|.|.+....
T Consensus 392 ----------------------~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~ 449 (500)
T KOG0120|consen 392 ----------------------TQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDEN 449 (500)
T ss_pred ----------------------cccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCC
Confidence 00011122344444441 111 1 2566777889999999998877322
Q ss_pred -CCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEcc
Q 002709 469 -KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 513 (890)
Q Consensus 469 -g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~ 513 (890)
....|..||+|.+.++|++|+++|+ |..|.||.+...|..
T Consensus 450 ~~~G~GkVFVefas~ed~qrA~~~L~-----GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 450 PVPGTGKVFVEFADTEDSQRAMEELT-----GRKFANRTVVASYYD 490 (500)
T ss_pred cCCCcccEEEEecChHHHHHHHHHcc-----CceeCCcEEEEEecC
Confidence 2457889999999999999999999 999999999998854
No 51
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.7e-15 Score=168.16 Aligned_cols=306 Identities=21% Similarity=0.346 Sum_probs=208.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccC-----------C-CeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPV-----------G-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-----------G-~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng 280 (890)
......++|+++|..++++..-.+|..- | .+..|.+-. ...|||++|.+.++|..|+. +++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~~-~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAMA-LDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhhc-ccc
Confidence 3456789999999999999999998863 2 255555543 56799999999999999998 799
Q ss_pred ceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHH
Q 002709 281 QKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVD 360 (890)
Q Consensus 281 ~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (890)
..+.|.++.+..-..... .. ... ..+.
T Consensus 245 ~~f~g~~~~~~r~~d~~~--~p-~~~-----------------------------------------~~~~--------- 271 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQP--VP-GIT-----------------------------------------LSPS--------- 271 (500)
T ss_pred hhhCCCCceecccccccC--Cc-cch-----------------------------------------hhhc---------
Confidence 999999988753211100 00 000 0000
Q ss_pred HHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCC
Q 002709 361 IARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPF 440 (890)
Q Consensus 361 ~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~ 440 (890)
. .+.+..... ..........+||+|||.
T Consensus 272 -------~----~~~~~~~~~-----------------------------------------~t~~~~~~~ki~v~~lp~ 299 (500)
T KOG0120|consen 272 -------Q----LGKVGLLPA-----------------------------------------STDVPDSPNKIFVGGLPL 299 (500)
T ss_pred -------c----ccccCCccc-----------------------------------------ccCcccccchhhhccCcC
Confidence 0 000000000 000111236899999999
Q ss_pred CCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhch
Q 002709 441 DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHD 520 (890)
Q Consensus 441 ~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~~~ 520 (890)
.+++.++.++...||.+....++.+..+|.++||||.+|.++.....|+..|| |..+++..|.|..|..-.....
T Consensus 300 ~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLn-----Gm~lgd~~lvvq~A~~g~~~~~ 374 (500)
T KOG0120|consen 300 YLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN-----GMQLGDKKLVVQRAIVGASNAN 374 (500)
T ss_pred ccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccc-----hhhhcCceeEeehhhccchhcc
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999875422211
Q ss_pred hhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCccCeEEEeCC--CCC-CCHH
Q 002709 521 KEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNL--PKS-MTEK 597 (890)
Q Consensus 521 ~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NL--P~~-~tee 597 (890)
. +.+++.. ...+.+ .+.-+...++...|++.|+ |.+ ..++
T Consensus 375 ~-----------~~~~~~~----~~~~i~----------------------~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~ 417 (500)
T KOG0120|consen 375 V-----------NFNISQS----QVPGIP----------------------LLMTQMAGIPTEVLCLTNVVTPDELKDDE 417 (500)
T ss_pred c-----------cCCcccc----ccccch----------------------hhhcccCCCcchhhhhhhcCCHHHhcchH
Confidence 0 0110000 000000 0000111223456777777 333 3567
Q ss_pred HHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccEEEEe
Q 002709 598 GLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFA 677 (890)
Q Consensus 598 eL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~~~~~g~~~rliV~~A 677 (890)
|+.++.+....+|+. ||.|.+|.|.++.... ......|-.||+|.+.++|++|+.+|+|. .|. ++.++..|.
T Consensus 418 EyeeIlEdvr~ec~k--~g~v~~v~ipr~~~~~---~~~~G~GkVFVefas~ed~qrA~~~L~Gr--KF~-nRtVvtsYy 489 (500)
T KOG0120|consen 418 EYEEILEDVRTECAK--FGAVRSVEIPRPYPDE---NPVPGTGKVFVEFADTEDSQRAMEELTGR--KFA-NRTVVASYY 489 (500)
T ss_pred HHHHHHHHHHHHhcc--cCceeEEecCCCCCCC---CcCCCcccEEEEecChHHHHHHHHHccCc--eeC-CcEEEEEec
Confidence 777777765555554 9999999999873222 23456789999999999999999999995 677 255557787
Q ss_pred ccc
Q 002709 678 VDN 680 (890)
Q Consensus 678 ~e~ 680 (890)
.++
T Consensus 490 deD 492 (500)
T KOG0120|consen 490 DED 492 (500)
T ss_pred CHH
Confidence 543
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.61 E-value=2.4e-14 Score=142.80 Aligned_cols=207 Identities=21% Similarity=0.291 Sum_probs=145.3
Q ss_pred CcEEEEccCCCCCCHHHHHH----hhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 002709 216 KWKLIIRNIPFKAKVNEIKD----MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (890)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~----~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~ 291 (890)
..+|||.||+..+..++|+. +|++||.|..|.... +.+.+|.|||.|.+.+.|..|+..|+|..|.|++++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999988 999999999888775 56799999999999999999999999999999999999
Q ss_pred eecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhccc
Q 002709 292 WAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTS 371 (890)
Q Consensus 292 ~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (890)
||..+..........- .+........ ....... . ...+..+
T Consensus 86 yA~s~sdii~~~~~~~-v~~~~k~~~~--------------~~~~~~~-----~---~~~ng~~---------------- 126 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTF-VEKEKKINGE--------------ILARIKQ-----P---LDTNGHF---------------- 126 (221)
T ss_pred cccCccchhhccCcee-ccccCccccc--------------cccccCC-----c---ccccccc----------------
Confidence 9976654433322110 0000000000 0000000 0 0000000
Q ss_pred CCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHH
Q 002709 372 TTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRF 451 (890)
Q Consensus 372 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F 451 (890)
..+.....+.+.. .....+...||+.|||..++.+.|..+|
T Consensus 127 --------------------------------------~~~~~~~~p~p~~-~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 127 --------------------------------------YNMNRMNLPPPFL-AQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred --------------------------------------cccccccCCCCcc-ccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 0000000111111 2234567899999999999999999999
Q ss_pred hhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeec-CeEEEEEEcc
Q 002709 452 SAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-GRQLTVLKAL 513 (890)
Q Consensus 452 ~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~-Gr~l~V~~a~ 513 (890)
..|.....++++... .+.|||+|.+...|..|..++. +..+- .+.+.|.++.
T Consensus 168 ~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq-----~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 168 EQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQ-----GFKITKKNTMQITFAK 220 (221)
T ss_pred hhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhc-----cceeccCceEEecccC
Confidence 999999998876543 6899999999999999999999 77775 8888888764
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=8.5e-15 Score=139.79 Aligned_cols=154 Identities=17% Similarity=0.248 Sum_probs=130.0
Q ss_pred CCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceec
Q 002709 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (890)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (890)
+..++|||||||.++-+.+|.++|.+||.|..|.+-. .....+||||+|+++.+|..||..-+|..+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~------------r~g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN------------RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEecc------------CCCCCCeeEEEecCccchhhhhhcccccccC
Confidence 4678999999999999999999999999999998821 1234689999999999999999999999999
Q ss_pred CeEEEEecCC--------------------------CCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccC
Q 002709 199 GGTVWARQLG--------------------------GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 252 (890)
Q Consensus 199 g~~i~v~~~~--------------------------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~ 252 (890)
|..|.|.... .........+|+|.+||...+.++|+++....|.|....+.+|
T Consensus 72 g~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD- 150 (241)
T KOG0105|consen 72 GCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD- 150 (241)
T ss_pred cceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-
Confidence 9999985421 1223455679999999999999999999999999998888876
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhCCceeC--CeeEEEE
Q 002709 253 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG--KRPIAVD 291 (890)
Q Consensus 253 ~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~--g~~I~V~ 291 (890)
|++.|+|...|+...|+..|....+. |-...+.
T Consensus 151 ------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 151 ------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred ------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 47999999999999999999887763 4444443
No 54
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.59 E-value=3.6e-14 Score=141.59 Aligned_cols=204 Identities=25% Similarity=0.336 Sum_probs=141.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecC
Q 002709 429 LQNTIFICNLPFDLDNEEVKQ----RFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 504 (890)
Q Consensus 429 ~~~~l~V~NLp~~~tee~L~~----~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~G 504 (890)
+..||||.||+..+..++|+. +|+.||.|..|... .+.+.+|-|||.|.+.+.|..|+.+|+ |+.|.|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~-----gfpFyg 79 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQ-----GFPFYG 79 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhc-----CCcccC
Confidence 345999999999999999888 99999999998554 356789999999999999999999999 999999
Q ss_pred eEEEEEEccChhhhchhhhh-hhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCC---CCC
Q 002709 505 RQLTVLKALDKKLAHDKEID-KSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPN---FHV 580 (890)
Q Consensus 505 r~l~V~~a~~k~~~~~~~~~-~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~---~~~ 580 (890)
+++.|.||..+...-.+... ........ +.--+...+ ..+...+.... .....++.|. .+.
T Consensus 80 K~mriqyA~s~sdii~~~~~~~v~~~~k~-~~~~~~~~~----~~~~~ng~~~~----------~~~~~~p~p~~~~~~p 144 (221)
T KOG4206|consen 80 KPMRIQYAKSDSDIIAQAPGTFVEKEKKI-NGEILARIK----QPLDTNGHFYN----------MNRMNLPPPFLAQMAP 144 (221)
T ss_pred chhheecccCccchhhccCceeccccCcc-ccccccccC----Ccccccccccc----------cccccCCCCccccCCC
Confidence 99999999876543221100 00000000 000000000 00000000000 0000011111 123
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 002709 581 SRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN 660 (890)
Q Consensus 581 s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Ln 660 (890)
+...|++.|||.+++.+.|..+|+ +|+....|+++.. -.+.|||+|.+...|..|..+|+
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~---------qf~g~keir~i~~-----------~~~iAfve~~~d~~a~~a~~~lq 204 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFE---------QFPGFKEIRLIPP-----------RSGIAFVEFLSDRQASAAQQALQ 204 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHh---------hCcccceeEeccC-----------CCceeEEecchhhhhHHHhhhhc
Confidence 456899999999999999999999 6999999999853 36899999999999999999999
Q ss_pred CCCCCCCCCCccEEEEe
Q 002709 661 NNPKTFGPEHRPIVEFA 677 (890)
Q Consensus 661 g~~~~~g~~~rliV~~A 677 (890)
+..+ .+.+.+.|.||
T Consensus 205 ~~~i--t~~~~m~i~~a 219 (221)
T KOG4206|consen 205 GFKI--TKKNTMQITFA 219 (221)
T ss_pred ccee--ccCceEEeccc
Confidence 9743 33466668777
No 55
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.55 E-value=5.8e-13 Score=139.71 Aligned_cols=304 Identities=18% Similarity=0.184 Sum_probs=196.1
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHh--CCceeCCeeEEE
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF--NGQKFGKRPIAV 290 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l--ng~~l~g~~I~V 290 (890)
...+..|.|++|-..++|.+|.+.++.||.|..+.++. .+..|.|+|++.+.|..++... +...+.|+.-.+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P------~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP------HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEecc------ccceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 44566899999999999999999999999999887765 3456999999999999888632 122234444444
Q ss_pred EeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcc
Q 002709 291 DWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLT 370 (890)
Q Consensus 291 ~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (890)
.++.......
T Consensus 102 NyStsq~i~R---------------------------------------------------------------------- 111 (494)
T KOG1456|consen 102 NYSTSQCIER---------------------------------------------------------------------- 111 (494)
T ss_pred ccchhhhhcc----------------------------------------------------------------------
Confidence 4432111100
Q ss_pred cCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEc--CCCCCCCHHHHH
Q 002709 371 STTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFIC--NLPFDLDNEEVK 448 (890)
Q Consensus 371 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~--NLp~~~tee~L~ 448 (890)
.......++..|.+. |--+.+|.+-|.
T Consensus 112 ---------------------------------------------------~g~es~~pN~VLl~TIlNp~YpItvDVly 140 (494)
T KOG1456|consen 112 ---------------------------------------------------PGDESATPNKVLLFTILNPQYPITVDVLY 140 (494)
T ss_pred ---------------------------------------------------CCCCCCCCCeEEEEEeecCccccchhhhh
Confidence 000011223344443 555678999999
Q ss_pred HHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhcc
Q 002709 449 QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKN 528 (890)
Q Consensus 449 ~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~ 528 (890)
.++.+.|.|..|.|+.. + --.|.|+|++.+.|++|..+||++ ..+-+-.+|+|.||.+-.-. ..+...
T Consensus 141 ~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGA---DIYsGCCTLKIeyAkP~rln----V~knd~ 208 (494)
T KOG1456|consen 141 TICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGA---DIYSGCCTLKIEYAKPTRLN----VQKNDK 208 (494)
T ss_pred hhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccc---cccccceeEEEEecCcceee----eeecCC
Confidence 99999999999977654 2 347999999999999999999933 23335589999999874211 111111
Q ss_pred ccccccchhhhcc---ccc---cCCCCCCCCCChhhH-------------------HHHHHHHHHhhhccCCCCCCCccC
Q 002709 529 ETNDHRNLYLAKE---GLI---LEGTPAAEGVSDDDM-------------------SKRQMLHEKKMTKLQSPNFHVSRT 583 (890)
Q Consensus 529 ~~~~~~~l~l~~e---g~~---~~~~p~a~~~s~~~~-------------------~~r~~~~~~~~~~~~~p~~~~s~~ 583 (890)
..+|...-++... |.- .-.-|+..+..++.. ..|......--.....|....+++
T Consensus 209 DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~ 288 (494)
T KOG1456|consen 209 DTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGC 288 (494)
T ss_pred ccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCc
Confidence 1222221111100 000 000000000000000 000000000001133345556789
Q ss_pred eEEEeCCCC-CCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 002709 584 RLVIYNLPK-SMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 662 (890)
Q Consensus 584 ~L~V~NLP~-~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~ 662 (890)
.+.|.+|.. .++-+.|..+|. .||.|..|++|+-. .|.|.|++.+..+.++|+..|||.
T Consensus 289 VmMVyGLdh~k~N~drlFNl~C---------lYGNV~rvkFmkTk-----------~gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 289 VMMVYGLDHGKMNCDRLFNLFC---------LYGNVERVKFMKTK-----------PGTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred EEEEEeccccccchhhhhhhhh---------hcCceeeEEEeecc-----------cceeEEEcCcHHHHHHHHHHhccC
Confidence 999999965 578889999999 69999999999742 689999999999999999999998
Q ss_pred CCCCCCCCccEEEEec
Q 002709 663 PKTFGPEHRPIVEFAV 678 (890)
Q Consensus 663 ~~~~g~~~rliV~~A~ 678 (890)
+ +|| .+|-|.++.
T Consensus 349 ~-lfG--~kl~v~~Sk 361 (494)
T KOG1456|consen 349 P-LFG--GKLNVCVSK 361 (494)
T ss_pred c-ccc--ceEEEeecc
Confidence 4 688 788888883
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.53 E-value=5.9e-14 Score=136.24 Aligned_cols=83 Identities=34% Similarity=0.572 Sum_probs=79.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002709 429 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 508 (890)
Q Consensus 429 ~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~ 508 (890)
..++|||+|||+++|+++|+++|++||.|.+|.|+.+..++.++|||||+|.+.++|+.|++.|| +..|+|+.|.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln-----g~~i~Gr~l~ 107 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD-----GKELNGRHIR 107 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC-----CCEECCEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccChh
Q 002709 509 VLKALDKK 516 (890)
Q Consensus 509 V~~a~~k~ 516 (890)
|.|+.++.
T Consensus 108 V~~a~~~~ 115 (144)
T PLN03134 108 VNPANDRP 115 (144)
T ss_pred EEeCCcCC
Confidence 99998654
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.52 E-value=7.5e-14 Score=135.53 Aligned_cols=85 Identities=27% Similarity=0.439 Sum_probs=79.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
....++|||+|||+.+++++|+++|++||.|.+|.|+.+..+++++|||||+|.+.++|+.|+..||+..|.|+.|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 002709 293 AVPKN 297 (890)
Q Consensus 293 a~pk~ 297 (890)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97653
No 58
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.8e-13 Score=129.51 Aligned_cols=183 Identities=19% Similarity=0.264 Sum_probs=132.4
Q ss_pred CCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002709 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (890)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a 293 (890)
...++|||+|||.++-+.+|.++|.+||.|..|.|...+ ...+||||+|+++-+|+.||..-+|..+.|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 346799999999999999999999999999999885432 25789999999999999999999999999999999997
Q ss_pred cCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCC
Q 002709 294 VPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTT 373 (890)
Q Consensus 294 ~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (890)
.--... ......
T Consensus 81 rggr~s-~~~~G~------------------------------------------------------------------- 92 (241)
T KOG0105|consen 81 RGGRSS-SDRRGS------------------------------------------------------------------- 92 (241)
T ss_pred cCCCcc-cccccc-------------------------------------------------------------------
Confidence 422100 000000
Q ss_pred CCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhh
Q 002709 374 GSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSA 453 (890)
Q Consensus 374 g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~ 453 (890)
...-... +.. ..+...++ .......|.|.+||...+.++|++++..
T Consensus 93 --y~gggrg-----Ggg--------------------~gg~rgpp-------srrSe~RVvVsGLp~SgSWQDLKDHmRe 138 (241)
T KOG0105|consen 93 --YSGGGRG-----GGG--------------------GGGRRGPP-------SRRSEYRVVVSGLPPSGSWQDLKDHMRE 138 (241)
T ss_pred --cCCCCCC-----CCC--------------------CCcccCCc-------ccccceeEEEecCCCCCchHHHHHHHHh
Confidence 0000000 000 00000011 1223468999999999999999999999
Q ss_pred CCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEE
Q 002709 454 FGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 511 (890)
Q Consensus 454 fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~ 511 (890)
-|.|....+.+| |++.|.|...++...|+..|..+ .+.-.|....+..
T Consensus 139 aGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~---~~~seGe~~yirv 186 (241)
T KOG0105|consen 139 AGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQ---KFRSEGETAYIRV 186 (241)
T ss_pred hCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccc---cccCcCcEeeEEe
Confidence 999999877654 58999999999999999999843 2222566555554
No 59
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.51 E-value=4.6e-13 Score=140.90 Aligned_cols=272 Identities=21% Similarity=0.287 Sum_probs=186.4
Q ss_pred EEEEcCCCccchHHHHHHHhhcC----CCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceec
Q 002709 123 TVIIGGLLNADMAEEVHRLAGSI----GTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (890)
Q Consensus 123 tv~V~nLp~~~te~~L~~~F~~~----G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (890)
.|-..+||+..+..+|..+|... |.+.-|.. ..|...|.|.|.|.+.|.-..|++. +.+.+.
T Consensus 62 vvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~-------------~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g 127 (508)
T KOG1365|consen 62 VVRARGLPWQSSDQDIARFFKGLNIANGGRALCLN-------------AQGRRNGEALVRFVDPEGRDLALKR-HKHHMG 127 (508)
T ss_pred EEEecCCCCCcccCCHHHHHhhhhccccceeeeeh-------------hhhccccceEEEecCchhhhhhhHh-hhhhcc
Confidence 34567999999999999999843 22222221 3577789999999999999999885 667777
Q ss_pred CeEEEEecCCCC----------------CCCCCCcEEEEccCCCCCCHHHHHHhhccC----CCeEEEEEcccCCCCCcc
Q 002709 199 GGTVWARQLGGE----------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPV----GLVWNVYIPHNTDTGLSK 258 (890)
Q Consensus 199 g~~i~v~~~~~~----------------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~~~~~g~~~ 258 (890)
++.|.+-...++ .++...-.|-+++||+++++.++.++|.+- |....|.++..+ +|+..
T Consensus 128 ~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpT 206 (508)
T KOG1365|consen 128 TRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPT 206 (508)
T ss_pred CCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcc
Confidence 777765332111 112234467788999999999999999742 234455555533 68999
Q ss_pred eEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccC
Q 002709 259 GFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETAS 338 (890)
Q Consensus 259 g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (890)
|-|||.|..+++|+.||.+ |...|+.|-|.+-
T Consensus 207 GdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF----------------------------------------------- 238 (508)
T KOG1365|consen 207 GDAFVLFACEEDAQFALRK-HRQNIGQRYIELF----------------------------------------------- 238 (508)
T ss_pred cceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH-----------------------------------------------
Confidence 9999999999999999996 6556665555442
Q ss_pred CCCCCccccCCCCCCCchhHHHHHHHHhhhcccC-CCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCC
Q 002709 339 DDSNSSEKEDLPSNADFDEEVDIARKVLNKLTST-TGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKP 417 (890)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~ 417 (890)
.++.....+++++.... .++.+. . |...+.
T Consensus 239 -----------------RSTaaEvqqvlnr~~s~pLi~~~~------s-----------------------p~~p~~--- 269 (508)
T KOG1365|consen 239 -----------------RSTAAEVQQVLNREVSEPLIPGLT------S-----------------------PLLPGG--- 269 (508)
T ss_pred -----------------HHhHHHHHHHHHhhccccccCCCC------C-----------------------CCCCCC---
Confidence 23333344444443320 000000 0 000000
Q ss_pred CcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCCC-eEE--EEEeecCCCCCCCceEEEEECCHHHHHHHHHHhcc
Q 002709 418 KSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVS--FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKT 494 (890)
Q Consensus 418 ~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~-I~~--v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~ 494 (890)
+....+......+|.+++||+..+.++|.+||..|-. |.. |.++.+ ..|++.|-|||+|.+.++|..|....+
T Consensus 270 --p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~h- 345 (508)
T KOG1365|consen 270 --PARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCH- 345 (508)
T ss_pred --ccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHH-
Confidence 0000112223569999999999999999999999874 444 666666 478999999999999999999999988
Q ss_pred CCCCCeeecCeEEEEEEccC
Q 002709 495 TSGLGIFLKGRQLTVLKALD 514 (890)
Q Consensus 495 ~~~~g~~l~Gr~l~V~~a~~ 514 (890)
.....+|.|.|..+.-
T Consensus 346 ----k~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 346 ----KKLMKSRYIEVFPCSV 361 (508)
T ss_pred ----HhhcccceEEEeeccH
Confidence 6677799999988653
No 60
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.49 E-value=9.8e-13 Score=129.48 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=68.5
Q ss_pred CCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEccc-CCCCCcceEEEEEecCHHHHHHHHHHhCCcee---CCeeEEE
Q 002709 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRPIAV 290 (890)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~-~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l---~g~~I~V 290 (890)
.-++|||.+||.++...+|..+|..|-..+.+.|-.. ....-.+.+|||.|.+..+|..|+..|||..| .+..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3579999999999999999999999877666655432 11123458999999999999999999999999 6889999
Q ss_pred EeecCCC
Q 002709 291 DWAVPKN 297 (890)
Q Consensus 291 ~~a~pk~ 297 (890)
+++....
T Consensus 113 ElAKSNt 119 (284)
T KOG1457|consen 113 ELAKSNT 119 (284)
T ss_pred eehhcCc
Confidence 9987543
No 61
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.49 E-value=9.9e-13 Score=129.45 Aligned_cols=211 Identities=24% Similarity=0.267 Sum_probs=128.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeec-CCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeec--
Q 002709 427 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH-QVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-- 503 (890)
Q Consensus 427 ~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~-~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~-- 503 (890)
...-+||||.+||.++-..+|+.+|..|-.-+.+.|.+. +.....+.+|||.|.+..+|..|+.+|| |..|+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLN-----GvrFDpE 105 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALN-----GVRFDPE 105 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhc-----Ceeeccc
Confidence 344589999999999999999999999977777655433 2233456899999999999999999999 99996
Q ss_pred -CeEEEEEEccChhhhchhhhhhhcccc----ccccchh-------hhccccccCC----CCCCCCCChhhHHHHHHHHH
Q 002709 504 -GRQLTVLKALDKKLAHDKEIDKSKNET----NDHRNLY-------LAKEGLILEG----TPAAEGVSDDDMSKRQMLHE 567 (890)
Q Consensus 504 -Gr~l~V~~a~~k~~~~~~~~~~~~~~~----~~~~~l~-------l~~eg~~~~~----~p~a~~~s~~~~~~r~~~~~ 567 (890)
+..|++.+|+.....++......-... .+.++.- ...++...+. .-.+..+-..+......+..
T Consensus 106 ~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a 185 (284)
T KOG1457|consen 106 TGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSA 185 (284)
T ss_pred cCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhh
Confidence 789999999865433221111100000 0000000 0000100000 00011111111111101000
Q ss_pred HhhhccCC--------CCC---CCccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCC
Q 002709 568 KKMTKLQS--------PNF---HVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKH 636 (890)
Q Consensus 568 ~~~~~~~~--------p~~---~~s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~ 636 (890)
...+.+. ... ..--.+|||-||...+||++|+.+|+. |....-++|.- .
T Consensus 186 -~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~---------~~gf~~l~~~~---~------- 245 (284)
T KOG1457|consen 186 -PDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSR---------YPGFHILKIRA---R------- 245 (284)
T ss_pred -hhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHh---------CCCceEEEEec---C-------
Confidence 0000000 000 011247999999999999999999995 77766665542 1
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhcCC
Q 002709 637 YSRGVAFVEFTEHQHALVALRVLNNN 662 (890)
Q Consensus 637 ~srG~aFV~F~t~e~A~~Al~~Lng~ 662 (890)
..-..|||+|.+.+.|..||..|+|+
T Consensus 246 ~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 246 GGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred CCcceEeecHHHHHHHHHHHHHhhcc
Confidence 13569999999999999999999997
No 62
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.44 E-value=7e-12 Score=131.27 Aligned_cols=199 Identities=17% Similarity=0.276 Sum_probs=132.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEE--------EEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCC
Q 002709 427 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 498 (890)
Q Consensus 427 ~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~--------v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~ 498 (890)
...++.|||.|||.++|.+++.++|+.+|.|.. |+|.++. .|..+|=|+|+|...++...|+..|+
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilD----- 204 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILD----- 204 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhC-----
Confidence 334678999999999999999999999998865 7777775 58999999999999999999999999
Q ss_pred CeeecCeEEEEEEccChhhhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhh----hccC
Q 002709 499 GIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKM----TKLQ 574 (890)
Q Consensus 499 g~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~----~~~~ 574 (890)
+..|.|+.|.|..|.=......-...+.+ + +..-.++....+.+. ..-.
T Consensus 205 e~~~rg~~~rVerAkfq~Kge~~~~~k~k--------------~-------------k~~~~kk~~k~q~k~~dw~pd~~ 257 (382)
T KOG1548|consen 205 EDELRGKKLRVERAKFQMKGEYDASKKEK--------------G-------------KCKDKKKLKKQQQKLLDWRPDRD 257 (382)
T ss_pred cccccCcEEEEehhhhhhccCcCcccccc--------------c-------------ccccHHHHHHHHHhhcccCCCcc
Confidence 89999999999988632110000000000 0 000001111111110 0001
Q ss_pred CCCCCCccCeEEEeCC--CC--CCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHH
Q 002709 575 SPNFHVSRTRLVIYNL--PK--SMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQ 650 (890)
Q Consensus 575 ~p~~~~s~~~L~V~NL--P~--~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e 650 (890)
.++.....++|.|+|| |. ..+.+.|.++=.+ +++.|.+ ||.|.+|.|.-. ++.|.+-|.|.+.+
T Consensus 258 ~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked-l~eec~K-~G~v~~vvv~d~----------hPdGvvtV~f~n~e 325 (382)
T KOG1548|consen 258 DPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED-LTEECEK-FGQVRKVVVYDR----------HPDGVVTVSFRNNE 325 (382)
T ss_pred ccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH-HHHHHHH-hCCcceEEEecc----------CCCceeEEEeCChH
Confidence 1222334578999999 32 3343334443222 2333332 999999977632 67899999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCccEE
Q 002709 651 HALVALRVLNNNPKTFGPEHRPIV 674 (890)
Q Consensus 651 ~A~~Al~~Lng~~~~~g~~~rliV 674 (890)
+|..||+.|+| ++|+ .|-+.
T Consensus 326 eA~~ciq~m~G--R~fd--gRql~ 345 (382)
T KOG1548|consen 326 EADQCIQTMDG--RWFD--GRQLT 345 (382)
T ss_pred HHHHHHHHhcC--eeec--ceEEE
Confidence 99999999999 5887 44443
No 63
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.41 E-value=3.9e-12 Score=134.01 Aligned_cols=284 Identities=19% Similarity=0.267 Sum_probs=179.1
Q ss_pred CCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002709 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (890)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~ 294 (890)
....|-.++||+..++.+|..+|........-..+.....|+..|.|.|.|.+.+.-..|++. +...+.++.|.|--+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccC
Confidence 344667889999999999999998643222222222223477889999999999999999995 7888899999886654
Q ss_pred CCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCC
Q 002709 295 PKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTG 374 (890)
Q Consensus 295 pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 374 (890)
+...+......+ .
T Consensus 138 ge~f~~iagg~s--------------------------------~----------------------------------- 150 (508)
T KOG1365|consen 138 GEEFLKIAGGTS--------------------------------N----------------------------------- 150 (508)
T ss_pred chhheEecCCcc--------------------------------c-----------------------------------
Confidence 332111000000 0
Q ss_pred CCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhC
Q 002709 375 SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF 454 (890)
Q Consensus 375 ~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~f 454 (890)
. +.++. .....-.|.+++||+++++.++.+||.+-
T Consensus 151 ----------e---------------------~~~fl--------------sk~~qvivRmRGLPfdat~~dVv~FF~~~ 185 (508)
T KOG1365|consen 151 ----------E---------------------AAPFL--------------SKENQVIVRMRGLPFDATALDVVEFFGPP 185 (508)
T ss_pred ----------c---------------------CCCCC--------------CcccceEEEecCCCCCcchHHHHHhcCCC
Confidence 0 00000 00012368889999999999999999632
Q ss_pred ----CCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhcccc
Q 002709 455 ----GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNET 530 (890)
Q Consensus 455 ----G~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~~~ 530 (890)
|..+.|-++. ..+|+..|-|||.|..+++|+.|+.... ..++-|.|.+..+... +..+.-+..
T Consensus 186 cpv~~g~egvLFV~-rpdgrpTGdAFvlfa~ee~aq~aL~khr------q~iGqRYIElFRSTaa------Evqqvlnr~ 252 (508)
T KOG1365|consen 186 CPVTGGTEGVLFVT-RPDGRPTGDAFVLFACEEDAQFALRKHR------QNIGQRYIELFRSTAA------EVQQVLNRE 252 (508)
T ss_pred CcccCCccceEEEE-CCCCCcccceEEEecCHHHHHHHHHHHH------HHHhHHHHHHHHHhHH------HHHHHHHhh
Confidence 2344553333 3489999999999999999999998754 4556666666543221 111111100
Q ss_pred ccccchhhhccccccC-CCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCccCeEEEeCCCCCCCHHHHHHHHHHHHhh
Q 002709 531 NDHRNLYLAKEGLILE-GTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVS 609 (890)
Q Consensus 531 ~~~~~l~l~~eg~~~~-~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~~teeeL~~lF~~~~~~ 609 (890)
. .++.|.. ++|...+. + ..+..+ ..+..+|.+++||++++.++|..+|.++...
T Consensus 253 ~--------s~pLi~~~~sp~~p~~-p--------------~~~~p~--~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~ 307 (508)
T KOG1365|consen 253 V--------SEPLIPGLTSPLLPGG-P--------------ARLVPP--TRSKDCVRLRGLPYEATVEDILDFLGDFATD 307 (508)
T ss_pred c--------cccccCCCCCCCCCCC-c--------------cccCCC--CCCCCeeEecCCChhhhHHHHHHHHHHHhhh
Confidence 0 0111111 11111100 0 000000 1125689999999999999999999986433
Q ss_pred hhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 002709 610 RASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 662 (890)
Q Consensus 610 ~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~ 662 (890)
. ....|.+..+ .+|++.|-|||+|.+.+.|..|....+++
T Consensus 308 i------~f~gVHmv~N-------~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 308 I------RFQGVHMVLN-------GQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred c------ccceeEEEEc-------CCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 2 1122555554 46789999999999999999999999885
No 64
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.3e-12 Score=130.93 Aligned_cols=84 Identities=31% Similarity=0.670 Sum_probs=80.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
....++|-|.||+.++++.+|.++|.+||.|.+|.|.+|..||.++|||||.|.+.++|++||..|||.-+..-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 002709 293 AVPK 296 (890)
Q Consensus 293 a~pk 296 (890)
+.|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9886
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.37 E-value=2.4e-12 Score=108.75 Aligned_cols=70 Identities=37% Similarity=0.668 Sum_probs=66.9
Q ss_pred EEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 002709 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (890)
Q Consensus 219 l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~ 289 (890)
|||+|||..+|+++|+++|+.||.|..+.+..+ .++..++||||+|.+.++|..|+..|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5788999999999999999999999999999999985
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.37 E-value=2.9e-12 Score=108.27 Aligned_cols=70 Identities=30% Similarity=0.572 Sum_probs=66.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002709 433 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 508 (890)
Q Consensus 433 l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~ 508 (890)
|||+|||.++|+++|+++|+.||.|..+.++.+ .++..+++|||.|.+.++|..|++.|+ |..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~-----g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELN-----GKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcC-----CCEECccCcC
Confidence 799999999999999999999999999999887 578899999999999999999999999 9999999885
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3e-12 Score=128.25 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeE
Q 002709 427 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 506 (890)
Q Consensus 427 ~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~ 506 (890)
....++|.|.||+.++++.+|+++|.+||.|..|.|.+++.||.++|||||.|.+.++|.+||..|| |+-++.-.
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln-----G~gyd~LI 260 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN-----GYGYDNLI 260 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc-----CcccceEE
Confidence 3456899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEEccCh
Q 002709 507 LTVLKALDK 515 (890)
Q Consensus 507 l~V~~a~~k 515 (890)
|.|.|+.|+
T Consensus 261 LrvEwskP~ 269 (270)
T KOG0122|consen 261 LRVEWSKPS 269 (270)
T ss_pred EEEEecCCC
Confidence 999999875
No 68
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.35 E-value=2e-11 Score=127.82 Aligned_cols=166 Identities=17% Similarity=0.266 Sum_probs=135.7
Q ss_pred ccCCCcEEEEcCCCccchHHHHHHHhhcCCCeEE--------EEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHH
Q 002709 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCS--------VTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACAS 188 (890)
Q Consensus 117 ~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~A 188 (890)
.+..+..|||.|||.++|.+++.++|++||.|.. |++-++. .|.-+|-|+|.|-..+++..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~----------~G~lKGDaLc~y~K~ESVeLA 199 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN----------QGKLKGDALCCYIKRESVELA 199 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC----------CCCccCceEEEeecccHHHHH
Confidence 3456778999999999999999999999998764 5554443 589999999999999999999
Q ss_pred HHHhCCceecCeEEEEecCC--------------------------------------CCCCCCCCcEEEEccCCC----
Q 002709 189 VALLHQKEIKGGTVWARQLG--------------------------------------GEGSKTQKWKLIIRNIPF---- 226 (890)
Q Consensus 189 i~~ln~~~i~g~~i~v~~~~--------------------------------------~~~~~~~~~~l~V~nLp~---- 226 (890)
+..|++..|.|..|.|.... ........++|+++|+=.
T Consensus 200 ~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~ 279 (382)
T KOG1548|consen 200 IKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDF 279 (382)
T ss_pred HHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHh
Confidence 99999999999999984310 011233457999999832
Q ss_pred CCC-------HHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002709 227 KAK-------VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (890)
Q Consensus 227 ~~t-------e~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk 296 (890)
..+ .++|.+-+..||.|.+|.|.-. .+.|.+-|.|.+.++|..||+.|+|..|.||.|......-+
T Consensus 280 ~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 280 EKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 222 4677788999999999988643 37789999999999999999999999999999999877544
No 69
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=2.7e-12 Score=115.99 Aligned_cols=79 Identities=25% Similarity=0.550 Sum_probs=75.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002709 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (890)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a 293 (890)
.+++|||+||++.++|++|.++|+.+|.|..|.+-.|..+..+.|||||+|.+.++|..|+..++|..|..++|+|+|-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4579999999999999999999999999999999999888899999999999999999999999999999999999985
No 70
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=4.7e-12 Score=128.02 Aligned_cols=146 Identities=29% Similarity=0.449 Sum_probs=123.9
Q ss_pred cEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 002709 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (890)
Q Consensus 122 rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~ 201 (890)
..||||+||+.+.+.+|..+|..||.|..|.+ ..||+||+|.+..+|..|+..|++..|.|..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m-----------------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM-----------------KNGFGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee-----------------ecccceeccCchhhhhcccchhcCceeccee
Confidence 36899999999999999999999999999887 2378999999999999999999999999987
Q ss_pred EEEecCCC------C---C-----------CCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEE
Q 002709 202 VWARQLGG------E---G-----------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFA 261 (890)
Q Consensus 202 i~v~~~~~------~---~-----------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~a 261 (890)
+-+..... . + .....+.++|.|++..+...+|.++|..+|.+....+ ..++|
T Consensus 65 ~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~ 136 (216)
T KOG0106|consen 65 LVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFA 136 (216)
T ss_pred eeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hcccc
Confidence 54422210 0 0 1234578999999999999999999999999854433 45689
Q ss_pred EEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 262 FVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 262 fV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
||+|...++|..|+..|++..+.++.|.+..
T Consensus 137 ~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 137 FVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 9999999999999999999999999999943
No 71
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.28 E-value=2.9e-11 Score=129.90 Aligned_cols=80 Identities=34% Similarity=0.663 Sum_probs=77.0
Q ss_pred CcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002709 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (890)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~p 295 (890)
.++|||+|||+.+|+++|.++|..||.|..|.+..+..++.++|||||.|.+.++|..|+..|+|..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988899999999999999999999999999999999999999754
No 72
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=7.7e-12 Score=126.49 Aligned_cols=167 Identities=23% Similarity=0.381 Sum_probs=129.8
Q ss_pred cEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002709 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (890)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk 296 (890)
..|||++||+.+.+.+|..+|..||.|..|.+. .||+||+|.+.-+|..|+..||+..|+|-.+.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999988774 478999999999999999999999999999999998643
Q ss_pred CCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCC
Q 002709 297 NIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 376 (890)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 376 (890)
..... .... + +. .. +
T Consensus 74 ~~~~g-~~~~-------------g-~r--------------------------~~---~--------------------- 88 (216)
T KOG0106|consen 74 RRGRG-RPRG-------------G-DR--------------------------RS---D--------------------- 88 (216)
T ss_pred ccccC-CCCC-------------C-Cc--------------------------cc---h---------------------
Confidence 21100 0000 0 00 00 0
Q ss_pred CCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCCC
Q 002709 377 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 456 (890)
Q Consensus 377 p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~ 456 (890)
... .....-..+.|+|.|++..+...+|.++|.++|.
T Consensus 89 ---------------------------~~~----------------~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~ 125 (216)
T KOG0106|consen 89 ---------------------------SRR----------------YRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGE 125 (216)
T ss_pred ---------------------------hhc----------------cCCcccccceeeeccchhhhhHHHHhhhhcccCC
Confidence 000 0001122478999999999999999999999999
Q ss_pred eEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEc
Q 002709 457 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 512 (890)
Q Consensus 457 I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a 512 (890)
+....+ ..+++||+|.+.++|..|+..|+ +..+.|+.|.+...
T Consensus 126 ~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~-----~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 126 VTYVDA--------RRNFAFVEFSEQEDAKRALEKLD-----GKKLNGRRISVEKN 168 (216)
T ss_pred Cchhhh--------hccccceeehhhhhhhhcchhcc-----chhhcCceeeeccc
Confidence 855433 36799999999999999999999 99999999999443
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.9e-11 Score=106.49 Aligned_cols=81 Identities=25% Similarity=0.417 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEE
Q 002709 428 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 507 (890)
Q Consensus 428 ~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l 507 (890)
..++-|||+|||+++|.++..++|..||.|..|+|=..+ ..+|.|||.|++..+|.+|+..|+ |+.+.++.|
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhls-----g~n~~~ryl 87 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLS-----GYNVDNRYL 87 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhc-----ccccCCceE
Confidence 346799999999999999999999999999999885443 468999999999999999999999 999999999
Q ss_pred EEEEccChh
Q 002709 508 TVLKALDKK 516 (890)
Q Consensus 508 ~V~~a~~k~ 516 (890)
.|.+..+..
T Consensus 88 ~vlyyq~~~ 96 (124)
T KOG0114|consen 88 VVLYYQPED 96 (124)
T ss_pred EEEecCHHH
Confidence 999987654
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.26 E-value=2.8e-11 Score=102.58 Aligned_cols=70 Identities=34% Similarity=0.632 Sum_probs=64.8
Q ss_pred EEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 002709 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (890)
Q Consensus 219 l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~ 289 (890)
|||+|||+++++++|.++|+.||.|..+.+..+.. +..+++|||+|.+.++|..|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999999999999884
No 75
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.25 E-value=2.9e-11 Score=102.46 Aligned_cols=70 Identities=29% Similarity=0.500 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002709 433 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 508 (890)
Q Consensus 433 l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~ 508 (890)
|||+|||+.+++++|+++|+.||.|..+.+..++. +.++++|||+|.+.++|.+|+..++ +..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~-----~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLN-----GKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCC-----CcEECCEEcC
Confidence 79999999999999999999999999999998876 8899999999999999999999998 8999999884
No 76
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1.4e-11 Score=128.04 Aligned_cols=102 Identities=28% Similarity=0.412 Sum_probs=87.8
Q ss_pred CCceecCeEEEEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHH
Q 002709 193 HQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 272 (890)
Q Consensus 193 n~~~i~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~ 272 (890)
++....|..+...+...........+|+|.|||+..-+-||+.+|.+||.|++|.|+.+.. -++||+||+|++.+||+
T Consensus 73 ~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--GSKGFGFVTmen~~dad 150 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--GSKGFGFVTMENPADAD 150 (376)
T ss_pred CCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--CCCccceEEecChhhHH
Confidence 4455556666665555555666678999999999999999999999999999999998753 39999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEeecCC
Q 002709 273 SAIQKFNGQKFGKRPIAVDWAVPK 296 (890)
Q Consensus 273 ~Al~~lng~~l~g~~I~V~~a~pk 296 (890)
+|..+|||..+.||+|.|..+.+.
T Consensus 151 RARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 151 RARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHhhcceeeceEEEEeccchh
Confidence 999999999999999999998754
No 77
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.23 E-value=9e-11 Score=126.11 Aligned_cols=171 Identities=25% Similarity=0.324 Sum_probs=123.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002709 430 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 509 (890)
Q Consensus 430 ~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V 509 (890)
.++|||+|||.++|+++|.++|..||.|..+.+..+..++.++|||||.|.+.++|..|+..++ +..|.|++|.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~-----~~~~~~~~~~v 189 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN-----GKELEGRPLRV 189 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC-----CCeECCceeEe
Confidence 5899999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred EEccC----hhhhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCccCeE
Q 002709 510 LKALD----KKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRL 585 (890)
Q Consensus 510 ~~a~~----k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L 585 (890)
.++.. +...... ....... .............+.+
T Consensus 190 ~~~~~~~~~~~~~~~~--------------~~~~~~~---------------------------~~~~~~~~~~~~~~~~ 228 (306)
T COG0724 190 QKAQPASQPRSELSNN--------------LDASFAK---------------------------KLSRGKALLLEKSDNL 228 (306)
T ss_pred eccccccccccccccc--------------cchhhhc---------------------------ccccccccccccccee
Confidence 99654 1110000 0000000 0000001112235689
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 002709 586 VIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 661 (890)
Q Consensus 586 ~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng 661 (890)
++.|++..++..++..+|. .+|.|..+.+..... ......+.++.+.....+..++.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (306)
T COG0724 229 YVGNLPLKTAEEELADLFK---------SRGDIVRASLPPSKD------GKIPKSRSFVGNEASKDALESNSRGNK 289 (306)
T ss_pred eccccccccchhHHHHhcc---------ccccceeeeccCCCC------CcccccccccchhHHHhhhhhhccccc
Confidence 9999999999999999999 588886666654321 113444555666666666655555444
No 78
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.2e-11 Score=110.17 Aligned_cols=79 Identities=23% Similarity=0.366 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002709 430 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 509 (890)
Q Consensus 430 ~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V 509 (890)
++||||+||++.++||+|.++|+.+|.|..|.+=.|+.+..+-|||||+|.+.++|..|+..++ |..|+.++|.|
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryis-----gtrLddr~ir~ 110 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYIS-----GTRLDDRPIRI 110 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhc-----cCcccccceee
Confidence 5899999999999999999999999999999888888888999999999999999999999999 99999999999
Q ss_pred EEcc
Q 002709 510 LKAL 513 (890)
Q Consensus 510 ~~a~ 513 (890)
.|..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 9854
No 79
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=1.7e-11 Score=122.60 Aligned_cols=78 Identities=32% Similarity=0.526 Sum_probs=73.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002709 430 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 509 (890)
Q Consensus 430 ~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V 509 (890)
-+.|||+||++.++.+.|+++|++||.|++..|+.|+.+|+++|||||+|.+.++|.+|++..| -.|+||+..|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~------piIdGR~aNc 85 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN------PIIDGRKANC 85 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC------Cccccccccc
Confidence 4789999999999999999999999999999999999999999999999999999999999876 7899999999
Q ss_pred EEcc
Q 002709 510 LKAL 513 (890)
Q Consensus 510 ~~a~ 513 (890)
.+|.
T Consensus 86 nlA~ 89 (247)
T KOG0149|consen 86 NLAS 89 (247)
T ss_pred chhh
Confidence 8865
No 80
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.20 E-value=5.6e-11 Score=123.35 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=70.1
Q ss_pred CcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002709 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (890)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~ 294 (890)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. ++|||||+|.++++|..||. |+|..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 46999999999999999999999999999999998753 57999999999999999996 99999999999999975
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.19 E-value=8.3e-11 Score=122.13 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002709 430 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 509 (890)
Q Consensus 430 ~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V 509 (890)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. ++|||||+|.+.++|..||. |+ |..|.|+.|.|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-Ln-----G~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LS-----GATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hc-----CCeeCCceEEE
Confidence 47999999999999999999999999999999988753 57999999999999999995 99 99999999999
Q ss_pred EEccCh
Q 002709 510 LKALDK 515 (890)
Q Consensus 510 ~~a~~k 515 (890)
.++.+.
T Consensus 75 t~a~~~ 80 (260)
T PLN03120 75 TPAEDY 80 (260)
T ss_pred EeccCC
Confidence 998743
No 82
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=3.9e-11 Score=114.60 Aligned_cols=77 Identities=30% Similarity=0.491 Sum_probs=71.7
Q ss_pred CCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002709 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (890)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a 293 (890)
...+.|||+||+..+++.||..+|..||.|.+|.|.++ +.|||||+|+++-+|+.|+..|+|..|+|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34679999999999999999999999999999999875 6799999999999999999999999999999999998
Q ss_pred cC
Q 002709 294 VP 295 (890)
Q Consensus 294 ~p 295 (890)
.-
T Consensus 83 ~G 84 (195)
T KOG0107|consen 83 TG 84 (195)
T ss_pred cC
Confidence 53
No 83
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.9e-11 Score=118.77 Aligned_cols=90 Identities=27% Similarity=0.430 Sum_probs=83.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
....++|||++|...+++.-|...|-+||.|..|.++.|.++++.+|||||+|.-.|+|..||..||+..|.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcCCC
Q 002709 293 AVPKNIYSSG 302 (890)
Q Consensus 293 a~pk~~~~~~ 302 (890)
|.|.+.....
T Consensus 87 AkP~kikegs 96 (298)
T KOG0111|consen 87 AKPEKIKEGS 96 (298)
T ss_pred cCCccccCCC
Confidence 9987764443
No 84
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=7.1e-11 Score=107.66 Aligned_cols=86 Identities=26% Similarity=0.532 Sum_probs=81.0
Q ss_pred CCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 002709 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (890)
Q Consensus 211 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V 290 (890)
.....++.|||.++...+|+++|.+.|..||.|..+.+-.|..||-.+|||+|+|.+.++|+.|+..|||..|.|..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCC
Q 002709 291 DWAVPK 296 (890)
Q Consensus 291 ~~a~pk 296 (890)
+|+.-+
T Consensus 147 Dw~Fv~ 152 (170)
T KOG0130|consen 147 DWCFVK 152 (170)
T ss_pred EEEEec
Confidence 998644
No 85
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=8.9e-12 Score=119.31 Aligned_cols=82 Identities=28% Similarity=0.429 Sum_probs=77.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
...+..|||+|||+.+||.+|.-.|++||.|..|.+++|..||+++||||+.|.+..+...|+..|||..|.||.|+|+.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ec
Q 002709 293 AV 294 (890)
Q Consensus 293 a~ 294 (890)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 53
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.13 E-value=8.7e-11 Score=114.70 Aligned_cols=79 Identities=24% Similarity=0.430 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002709 430 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 509 (890)
Q Consensus 430 ~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V 509 (890)
-.+|.|-||-+-++.++|+.+|++||.|-.|.|+.|..|+.++|||||.|....+|+.|+++|+ |.+|+|+.|.|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damD-----G~~ldgRelrV 87 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMD-----GAVLDGRELRV 87 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhc-----ceeeccceeee
Confidence 4789999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEcc
Q 002709 510 LKAL 513 (890)
Q Consensus 510 ~~a~ 513 (890)
++|.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 9876
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.13 E-value=7.6e-11 Score=115.10 Aligned_cols=84 Identities=32% Similarity=0.544 Sum_probs=79.1
Q ss_pred CCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 002709 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (890)
Q Consensus 211 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V 290 (890)
.......+|.|-||-+.++.++|+.+|++||.|-+|.|++|..|+.++|||||.|....+|+.|+..|+|..|+|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeec
Q 002709 291 DWAV 294 (890)
Q Consensus 291 ~~a~ 294 (890)
++|.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 8874
No 88
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=2.2e-10 Score=119.34 Aligned_cols=79 Identities=23% Similarity=0.525 Sum_probs=74.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002709 430 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 509 (890)
Q Consensus 430 ~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V 509 (890)
.+.|+|.||||...+-||+.+|.+||.|.+|.|+.+. ..++|||||+|++.++|++|-++|| |.++.||+|.|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LH-----gt~VEGRkIEV 168 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELH-----GTVVEGRKIEV 168 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhh-----cceeeceEEEE
Confidence 4789999999999999999999999999999999874 4489999999999999999999999 99999999999
Q ss_pred EEccCh
Q 002709 510 LKALDK 515 (890)
Q Consensus 510 ~~a~~k 515 (890)
..|..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 998866
No 89
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=7e-11 Score=118.31 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=73.8
Q ss_pred CCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002709 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (890)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a 293 (890)
..-+.|||++|+|.++.+.|+++|++||.|++..|+.|+.+|+++||+||+|.+.+.|.+|++. -.-.|+||+-.|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3456899999999999999999999999999999999999999999999999999999999996 456789999999887
Q ss_pred c
Q 002709 294 V 294 (890)
Q Consensus 294 ~ 294 (890)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 90
>PLN03213 repressor of silencing 3; Provisional
Probab=99.12 E-value=1.6e-10 Score=125.28 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=72.6
Q ss_pred CCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCH--HHHHHHHHHhCCceeCCeeEEEE
Q 002709 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK--RDAESAIQKFNGQKFGKRPIAVD 291 (890)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~--e~A~~Al~~lng~~l~g~~I~V~ 291 (890)
....+|||+||++.+++++|..+|..||.|.+|.|++ .+| +|||||+|.+. .++.+||..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 4457999999999999999999999999999999994 466 99999999987 78999999999999999999999
Q ss_pred eecCC
Q 002709 292 WAVPK 296 (890)
Q Consensus 292 ~a~pk 296 (890)
.|.|.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 98764
No 91
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=1.1e-11 Score=118.55 Aligned_cols=82 Identities=27% Similarity=0.439 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002709 429 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 508 (890)
Q Consensus 429 ~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~ 508 (890)
.+.-|||+|||++.||.+|..+|++||.|+.|.+++|..||.++||||++|.+.-+...|+..|| |+.|.||.|.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~N-----Giki~gRtir 108 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLN-----GIKILGRTIR 108 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccC-----CceecceeEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccCh
Q 002709 509 VLKALDK 515 (890)
Q Consensus 509 V~~a~~k 515 (890)
|......
T Consensus 109 VDHv~~Y 115 (219)
T KOG0126|consen 109 VDHVSNY 115 (219)
T ss_pred eeecccc
Confidence 9875543
No 92
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=1.1e-10 Score=106.37 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeE
Q 002709 427 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 506 (890)
Q Consensus 427 ~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~ 506 (890)
..++..|||.++...+|+++|.+.|..||.|..+.+-.|..||..+|||+|+|.+.++|++|+.++| |..|.|..
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~N-----g~~ll~q~ 143 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALN-----GAELLGQN 143 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhcc-----chhhhCCc
Confidence 3457899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEEccCh
Q 002709 507 LTVLKALDK 515 (890)
Q Consensus 507 l~V~~a~~k 515 (890)
|.|.|+.-+
T Consensus 144 v~VDw~Fv~ 152 (170)
T KOG0130|consen 144 VSVDWCFVK 152 (170)
T ss_pred eeEEEEEec
Confidence 999998754
No 93
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=2.6e-10 Score=117.45 Aligned_cols=81 Identities=23% Similarity=0.461 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEE
Q 002709 428 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 507 (890)
Q Consensus 428 ~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l 507 (890)
.+-+||||.-|+++++|..|+..|+.||.|..|.|+.+..||+++|||||+|.+.-+...|.+..+ |..|+|+.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad-----G~~Idgrri 173 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD-----GIKIDGRRI 173 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc-----CceecCcEE
Confidence 456899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEcc
Q 002709 508 TVLKAL 513 (890)
Q Consensus 508 ~V~~a~ 513 (890)
.|.+-.
T Consensus 174 ~VDvER 179 (335)
T KOG0113|consen 174 LVDVER 179 (335)
T ss_pred EEEecc
Confidence 999844
No 94
>smart00362 RRM_2 RNA recognition motif.
Probab=99.11 E-value=4.4e-10 Score=94.33 Aligned_cols=71 Identities=38% Similarity=0.586 Sum_probs=66.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002709 432 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 509 (890)
Q Consensus 432 ~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V 509 (890)
+|||+|||..++.++|+++|..||.|..+.+..+. +.++|+|||.|.+.++|..|+..++ +..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~-----~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALN-----GTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhC-----CcEECCEEEee
Confidence 58999999999999999999999999999888765 6789999999999999999999999 89999999987
No 95
>PLN03213 repressor of silencing 3; Provisional
Probab=99.10 E-value=2.8e-10 Score=123.45 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCH--HHHHHHHHHhccCCCCCeeecCeE
Q 002709 429 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTV--EAATAAVSASKTTSGLGIFLKGRQ 506 (890)
Q Consensus 429 ~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~--e~A~~Ai~~ln~~~~~g~~l~Gr~ 506 (890)
.+.+|||+||++.+++++|..+|+.||.|..|.|++ .+| ||||||.|.+. .++.+||..|| |..+.|+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLN-----GAEWKGR~ 79 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYN-----GCVWKGGR 79 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhc-----CCeecCce
Confidence 357999999999999999999999999999999984 466 99999999987 78999999999 99999999
Q ss_pred EEEEEccCh
Q 002709 507 LTVLKALDK 515 (890)
Q Consensus 507 l~V~~a~~k 515 (890)
|.|..|.+.
T Consensus 80 LKVNKAKP~ 88 (759)
T PLN03213 80 LRLEKAKEH 88 (759)
T ss_pred eEEeeccHH
Confidence 999999874
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.09 E-value=3.6e-10 Score=115.48 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=69.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002709 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (890)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~ 294 (890)
.+++|||+||++.+|+++|+++|+.||.|.+|.|+++. ...+||||+|.++++|..|+. |+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999874 456899999999999999996 99999999999998763
No 97
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=3.7e-10 Score=98.58 Aligned_cols=83 Identities=28% Similarity=0.462 Sum_probs=74.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
+.-.+.|||+|||+.+|.++..++|..||.|..|+|-.... .+|-|||.|++..+|.+|+..|+|..+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 33457899999999999999999999999999999976543 689999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002709 293 AVPKNI 298 (890)
Q Consensus 293 a~pk~~ 298 (890)
..|...
T Consensus 92 yq~~~~ 97 (124)
T KOG0114|consen 92 YQPEDA 97 (124)
T ss_pred cCHHHH
Confidence 877543
No 98
>smart00362 RRM_2 RNA recognition motif.
Probab=99.08 E-value=4.8e-10 Score=94.13 Aligned_cols=71 Identities=45% Similarity=0.789 Sum_probs=66.7
Q ss_pred EEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 002709 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (890)
Q Consensus 218 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V 290 (890)
+|||+|||..++.++|+++|..||.|..+.+..+. +.++|+|||+|.+.++|..|+..+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999999998765 678899999999999999999999999999999887
No 99
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=3.7e-10 Score=108.04 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002709 429 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 508 (890)
Q Consensus 429 ~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~ 508 (890)
..+.|||+||+..+++.||..+|..||.|.+|.|... +.|||||+|.++-+|..|+..|+ |..|+|..|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LD-----G~~~cG~r~r 78 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLD-----GKDICGSRIR 78 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcC-----CccccCceEE
Confidence 3689999999999999999999999999999987664 58999999999999999999999 9999999999
Q ss_pred EEEccCh
Q 002709 509 VLKALDK 515 (890)
Q Consensus 509 V~~a~~k 515 (890)
|.+..-.
T Consensus 79 VE~S~G~ 85 (195)
T KOG0107|consen 79 VELSTGR 85 (195)
T ss_pred EEeecCC
Confidence 9987643
No 100
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=4.2e-10 Score=115.93 Aligned_cols=82 Identities=23% Similarity=0.407 Sum_probs=77.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
..+-+||||.-|+++++|..|+..|+.||.|..|.|+++..||+++|||||+|.++-+...|.+..+|..|.|+.|.|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ec
Q 002709 293 AV 294 (890)
Q Consensus 293 a~ 294 (890)
-.
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 43
No 101
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=7.5e-10 Score=92.52 Aligned_cols=70 Identities=39% Similarity=0.568 Sum_probs=66.1
Q ss_pred EcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002709 435 ICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 509 (890)
Q Consensus 435 V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V 509 (890)
|+|||..+++++|+.+|..||.|..+.+..++.++.++|+|||.|.+.++|..|+..++ +..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~-----~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN-----GKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC-----CCeeCCcEEEe
Confidence 57999999999999999999999999998887778899999999999999999999999 89999999887
No 102
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.05 E-value=8.4e-10 Score=112.80 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002709 430 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 509 (890)
Q Consensus 430 ~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V 509 (890)
+.+|||+||++.+|+++|+++|+.||.|.+|.|+++. ...+||||+|.++++|..|+ .|+ |..|.+++|.|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLn-----Ga~l~d~~I~I 75 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLS-----GATIVDQRVCI 75 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcC-----CCeeCCceEEE
Confidence 5799999999999999999999999999999999874 45689999999999999999 599 99999999999
Q ss_pred EEccCh
Q 002709 510 LKALDK 515 (890)
Q Consensus 510 ~~a~~k 515 (890)
..+...
T Consensus 76 t~~~~y 81 (243)
T PLN03121 76 TRWGQY 81 (243)
T ss_pred EeCccc
Confidence 987643
No 103
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.05 E-value=1.3e-08 Score=114.86 Aligned_cols=156 Identities=7% Similarity=-0.079 Sum_probs=101.2
Q ss_pred ccceEEEEecCHHHHHHHHHhhCCceeCCeeeEEeecccchhHHhhhhhhchhhhhhhhhhcccCCCCccccccccchhh
Q 002709 10 HRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKL 89 (890)
Q Consensus 10 srG~AfV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~r~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (890)
..|.+||.|....++++|++. |.+.+-.|.|.|.++.... ......++ ....+.... ..+
T Consensus 351 ~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~-------~~~a~~~~----~~~~~~~~~----~~h---- 410 (944)
T KOG4307|consen 351 QTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLG-------RNGAPPFQ----AGVPPPVIQ----NNH---- 410 (944)
T ss_pred cCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCccc-------cccCcccc----ccCCCCccc----ccC----
Confidence 378999999999999999999 8899999999999884221 00000000 000000000 000
Q ss_pred hhcccCCCCcccccccccccCc-cccccccCCCcEEEEcCCCccchHHHHHHHhhcCCCeEE-EEeeCCchhhhhccccC
Q 002709 90 LESGKTVKPRKAATLGIDLADK-EDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCS-VTYPLPKEELEQHGLAQ 167 (890)
Q Consensus 90 ~e~~~~~~~~k~~~~~~~~~~~-~~~s~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~-v~i~~~k~~~~~~~~~~ 167 (890)
+ .+.+......-. .....-....-+|||..||..+++.++.++|...-.|++ |.+-+. .
T Consensus 411 --------g-~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~----------P 471 (944)
T KOG4307|consen 411 --------G-RPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL----------P 471 (944)
T ss_pred --------C-CCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC----------C
Confidence 0 000000000000 001123356788999999999999999999998888777 555332 4
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 002709 168 EGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWA 204 (890)
Q Consensus 168 ~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v 204 (890)
++.-++.|||.|..++++.+|...-+...++-+.|+|
T Consensus 472 ~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 472 TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 6888899999999999999998876777777777776
No 104
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.1e-10 Score=114.60 Aligned_cols=81 Identities=23% Similarity=0.400 Sum_probs=78.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002709 430 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 509 (890)
Q Consensus 430 ~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V 509 (890)
.++|||++|...+|+.-|...|=+||.|..|.++.|..++++||||||+|.-.|+|..||..|| +..|.||.|.|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMn-----esEL~GrtirV 84 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMN-----ESELFGRTIRV 84 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCc-----hhhhcceeEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred EEccCh
Q 002709 510 LKALDK 515 (890)
Q Consensus 510 ~~a~~k 515 (890)
.+|.|.
T Consensus 85 N~AkP~ 90 (298)
T KOG0111|consen 85 NLAKPE 90 (298)
T ss_pred eecCCc
Confidence 999975
No 105
>smart00360 RRM RNA recognition motif.
Probab=99.03 E-value=7.2e-10 Score=92.64 Aligned_cols=71 Identities=38% Similarity=0.707 Sum_probs=66.6
Q ss_pred EccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 002709 221 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (890)
Q Consensus 221 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~ 291 (890)
|+|||..+++++|+.+|..||.|..+.+..+..++.++|||||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778899999999999999999999999999999998873
No 106
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.03 E-value=4.2e-09 Score=118.75 Aligned_cols=162 Identities=13% Similarity=0.031 Sum_probs=115.7
Q ss_pred CcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 002709 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (890)
Q Consensus 121 ~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~ 200 (890)
.+.+-+.+.+...+..+++++|-.. .|.++.+..+. ..+...|-++|.|....++++|+.. |...+-.+
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~---------v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R 379 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENR---------VAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNR 379 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhh---------cCCCcCCceEEEecCcchHHHHHhc-Cchhhhhc
Confidence 3445577889999999999998743 23333332111 1233468899999999999999885 44444445
Q ss_pred EEEEecCCC----------------------------------C-----CCCCCCcEEEEccCCCCCCHHHHHHhhccCC
Q 002709 201 TVWARQLGG----------------------------------E-----GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVG 241 (890)
Q Consensus 201 ~i~v~~~~~----------------------------------~-----~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G 241 (890)
.+.+.+.+. . ....-..+|||..||..+++..+.++|...-
T Consensus 380 ~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~ 459 (944)
T KOG4307|consen 380 PFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA 459 (944)
T ss_pred ceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhh
Confidence 554422100 0 0112356999999999999999999999977
Q ss_pred CeEE-EEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002709 242 LVWN-VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (890)
Q Consensus 242 ~I~~-v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~ 294 (890)
.|++ |.|.+- -+++-++.|||.|..++++..|+..-+...++.+.|+|.-..
T Consensus 460 ~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 460 AVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred hhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 7777 555544 367889999999999999999988767777788899997653
No 107
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=1.2e-09 Score=121.64 Aligned_cols=160 Identities=18% Similarity=0.133 Sum_probs=114.1
Q ss_pred cccccCCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 002709 114 CSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLH 193 (890)
Q Consensus 114 ~s~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln 193 (890)
++.+....++|+|-|||.++++++|+.+|+.||+|..|+. +-..+|.+||+|.+..+|+.|++.|+
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--------------t~~~~~~~~v~FyDvR~A~~Alk~l~ 133 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--------------TPNKRGIVFVEFYDVRDAERALKALN 133 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--------------ccccCceEEEEEeehHhHHHHHHHHH
Confidence 3455567899999999999999999999999999999775 44567899999999999999999999
Q ss_pred CceecCeEEEEecCCC-----------------------CCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcc
Q 002709 194 QKEIKGGTVWARQLGG-----------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPH 250 (890)
Q Consensus 194 ~~~i~g~~i~v~~~~~-----------------------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~ 250 (890)
+..|.|+.+. ++.+. .........++. .|++..+..-++-.|.-+|.+.. ..
T Consensus 134 ~~~~~~~~~k-~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~-- 208 (549)
T KOG4660|consen 134 RREIAGKRIK-RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE-- 208 (549)
T ss_pred HHHhhhhhhc-CCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-cc--
Confidence 9999988876 22110 000111112222 28888887666777777887664 22
Q ss_pred cCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002709 251 NTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (890)
Q Consensus 251 ~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk 296 (890)
++.-...-|+.|.+..++..++..+ |..+.+....+.++.+-
T Consensus 209 ---~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 209 ---TPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred ---ccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCCC
Confidence 2222235678888888886666643 66677777667776653
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=6.4e-12 Score=145.13 Aligned_cols=306 Identities=18% Similarity=0.157 Sum_probs=216.8
Q ss_pred CcEEEEcCCCccchHHHHH-HHhhcCC------CeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 002709 121 ARTVIIGGLLNADMAEEVH-RLAGSIG------TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLH 193 (890)
Q Consensus 121 ~rtv~V~nLp~~~te~~L~-~~F~~~G------~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln 193 (890)
.++.+|.|-+.......|. .++.-|+ ...+++ ....+||+.-.++++|..++..+.
T Consensus 479 d~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R-----------------~~~R~ay~~~~~~~~~~ev~~~~~ 541 (881)
T KOG0128|consen 479 DKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSAR-----------------KVLRKAYSQVVDPEDALEVLEFFR 541 (881)
T ss_pred hhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHH-----------------HHHHHHHhcCcCchhHHHHHHHHH
Confidence 3456777877777777777 5555443 333222 245689999999999999998876
Q ss_pred CceecCeEEEEe---c----CCCCCCCCCCcEEEEccCCCCCCHH-HHHHhhccCCCeEEEEEcccCCCCCcceEEEEEe
Q 002709 194 QKEIKGGTVWAR---Q----LGGEGSKTQKWKLIIRNIPFKAKVN-EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265 (890)
Q Consensus 194 ~~~i~g~~i~v~---~----~~~~~~~~~~~~l~V~nLp~~~te~-~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F 265 (890)
+.......+-+- + ..-...........+.|+.+..... ..+..|..+|.|..|.++..........++++.+
T Consensus 542 r~Ere~gtl~~~~~~~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~ 621 (881)
T KOG0128|consen 542 RFEREYGTLESFDLCPEKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQ 621 (881)
T ss_pred HHHhccccHHHHhhhHHhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhh
Confidence 655443322110 0 0001123344567777876666555 5778899999999999886332222333788999
Q ss_pred cCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCcc
Q 002709 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSE 345 (890)
Q Consensus 266 ~~~e~A~~Al~~lng~~l~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (890)
....+++.|.. ..+..+.++.+.|..+.+....
T Consensus 622 s~~~~~esat~-pa~~~~a~~~~av~~ad~~~~~---------------------------------------------- 654 (881)
T KOG0128|consen 622 SKHGSAESATV-PAGGALANRSAAVGLADAEEKE---------------------------------------------- 654 (881)
T ss_pred ccccchhhccc-ccccccCCccccCCCCCchhhh----------------------------------------------
Confidence 99988888887 4777777777766655433200
Q ss_pred ccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCC
Q 002709 346 KEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEG 425 (890)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~ 425 (890)
.+|.... .
T Consensus 655 -------~~~kvs~-----------------------------------------------------------------n 662 (881)
T KOG0128|consen 655 -------ENFKVSP-----------------------------------------------------------------N 662 (881)
T ss_pred -------hccCcCc-----------------------------------------------------------------h
Confidence 0000000 0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCe
Q 002709 426 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 505 (890)
Q Consensus 426 ~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr 505 (890)
......++||+||+..+.+++|...|..||.+..+.+......++.+|+|||.|..++.|.+|+.... +..++
T Consensus 663 ~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-----~~~~g-- 735 (881)
T KOG0128|consen 663 EIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-----SCFFG-- 735 (881)
T ss_pred HHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-----hhhhh--
Confidence 00112589999999999999999999999999988877677788999999999999999999998665 33322
Q ss_pred EEEEEEccChhhhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCccCeE
Q 002709 506 QLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRL 585 (890)
Q Consensus 506 ~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L 585 (890)
+ ..|
T Consensus 736 ---------K-------------------------------------------------------------------~~v 739 (881)
T KOG0128|consen 736 ---------K-------------------------------------------------------------------ISV 739 (881)
T ss_pred ---------h-------------------------------------------------------------------hhh
Confidence 0 249
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 002709 586 VIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 661 (890)
Q Consensus 586 ~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng 661 (890)
+|+|.|+..|.++|+.+|. .+|.+++++++.. ..+.++|.|||.|.+..+|..++..+..
T Consensus 740 ~i~g~pf~gt~e~~k~l~~---------~~gn~~~~~~vt~-------r~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 740 AISGPPFQGTKEELKSLAS---------KTGNVTSLRLVTV-------RAGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred heeCCCCCCchHHHHhhcc---------ccCCccccchhhh-------hccccccceeccCCCcchhhhhcccchh
Confidence 9999999999999999999 4999999987654 2458999999999999999998776665
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.99 E-value=3.1e-09 Score=89.62 Aligned_cols=74 Identities=39% Similarity=0.551 Sum_probs=67.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEE
Q 002709 432 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 511 (890)
Q Consensus 432 ~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~ 511 (890)
+|+|+|||..+++++|+++|..||.|..+.+..+..+ .++|+|||.|.+.++|..|+..++ +..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~-----~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALN-----GKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEEeC
Confidence 4899999999999999999999999999988877644 678999999999999999999999 8889999999864
No 110
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.97 E-value=3.1e-09 Score=89.66 Aligned_cols=74 Identities=39% Similarity=0.714 Sum_probs=68.3
Q ss_pred EEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 218 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
+|+|+|||..+++++|+++|..||.|..+.+..+..+ ...++|||.|.+.++|..|+..+++..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999886643 6789999999999999999999999999999999874
No 111
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.96 E-value=1.1e-09 Score=123.09 Aligned_cols=79 Identities=33% Similarity=0.594 Sum_probs=77.1
Q ss_pred cEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002709 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (890)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~p 295 (890)
+.|||+|+|+++++++|.++|+..|.|.++++..|+.+|+.+||||++|.+.++|..|++.|||..+.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999854
No 112
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.94 E-value=1.6e-09 Score=121.81 Aligned_cols=82 Identities=34% Similarity=0.558 Sum_probs=79.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEE
Q 002709 431 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 510 (890)
Q Consensus 431 ~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~ 510 (890)
+.|||+|+|+++++++|.++|+..|.|.+++++.|+.+|.++||||++|.+.++|..|++.|| |..+.||+|.|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lN-----g~~~~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLN-----GAEFNGRKLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcC-----CcccCCceEEee
Confidence 799999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EccChhh
Q 002709 511 KALDKKL 517 (890)
Q Consensus 511 ~a~~k~~ 517 (890)
|+.....
T Consensus 94 ~~~~~~~ 100 (435)
T KOG0108|consen 94 YASNRKN 100 (435)
T ss_pred cccccch
Confidence 9886543
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.91 E-value=5.7e-09 Score=84.30 Aligned_cols=56 Identities=39% Similarity=0.726 Sum_probs=50.9
Q ss_pred HHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002709 233 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (890)
Q Consensus 233 L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a 293 (890)
|+++|++||.|..+.+..+. +++|||+|.+.++|..|+..|||..+.|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997642 589999999999999999999999999999999986
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=1.9e-10 Score=133.17 Aligned_cols=199 Identities=20% Similarity=0.148 Sum_probs=162.3
Q ss_pred eEEEEecCHHHHHHHHHhhCCceeCCeeeEEeecccchhHHhhhhhhchhhhhhhhhhcccCCCCccccccccchhhhhc
Q 002709 13 FGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLES 92 (890)
Q Consensus 13 ~AfV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~r~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 92 (890)
++|+.+....+|+.|..- .+..+.++.+.|..+.+++....
T Consensus 616 ~~~~~~s~~~~~esat~p-a~~~~a~~~~av~~ad~~~~~~~-------------------------------------- 656 (881)
T KOG0128|consen 616 QQQKVQSKHGSAESATVP-AGGALANRSAAVGLADAEEKEEN-------------------------------------- 656 (881)
T ss_pred hhhhhhccccchhhcccc-cccccCCccccCCCCCchhhhhc--------------------------------------
Confidence 889999999999999887 88889999999988864441100
Q ss_pred ccCCCCcccccccccccCccccccccCCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCc
Q 002709 93 GKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKM 172 (890)
Q Consensus 93 ~~~~~~~k~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~ 172 (890)
-++ .....+..+++||.||++.+.+.+|...|..+|.+..+.+...+ ..+..+
T Consensus 657 -~kv-----------------s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~---------n~~~~r 709 (881)
T KOG0128|consen 657 -FKV-----------------SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHK---------NEKRFR 709 (881)
T ss_pred -cCc-----------------CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHh---------hccccc
Confidence 000 00122456788999999999999999999999988777664222 368889
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecCeEEEEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccC
Q 002709 173 DASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 252 (890)
Q Consensus 173 g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~ 252 (890)
|+|||.|..+++|.+||....++.++ ...|+|+|+|+..|.++|+.+|..+|.+.++.++...
T Consensus 710 G~~Y~~F~~~~~~~aaV~f~d~~~~g-----------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r 772 (881)
T KOG0128|consen 710 GKAYVEFLKPEHAGAAVAFRDSCFFG-----------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR 772 (881)
T ss_pred cceeeEeecCCchhhhhhhhhhhhhh-----------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh
Confidence 99999999999999999965555443 3479999999999999999999999999999887765
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002709 253 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (890)
Q Consensus 253 ~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~p 295 (890)
.|+++|.|||.|.++.+|.+++..+++..+.-+.+.|..+.|
T Consensus 773 -~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 773 -AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred -ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 589999999999999999999998888888777777777665
No 115
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.86 E-value=1.1e-08 Score=82.69 Aligned_cols=56 Identities=34% Similarity=0.497 Sum_probs=50.1
Q ss_pred HHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEc
Q 002709 447 VKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 512 (890)
Q Consensus 447 L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a 512 (890)
|+++|++||.|..+.+.... +++|||+|.+.++|..|+..|| |..++|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~-----~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLN-----GRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHT-----TSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC-----CCEECCcEEEEEEC
Confidence 68999999999999775442 6999999999999999999999 99999999999986
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=98.84 E-value=1.3e-08 Score=86.37 Aligned_cols=61 Identities=26% Similarity=0.511 Sum_probs=55.3
Q ss_pred HHHHHHHHh----hCCCeEEEE-EeecCCC--CCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002709 444 NEEVKQRFS----AFGEVVSFV-PVLHQVT--KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 509 (890)
Q Consensus 444 ee~L~~~F~----~fG~I~~v~-i~~~~~~--g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V 509 (890)
+++|+++|+ .||.|.++. ++.++.+ +.++|||||.|.+.++|.+|+..|| |..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~-----g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLN-----GRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhC-----CCEECCEEEEe
Confidence 578888898 999999995 7777666 8899999999999999999999999 99999999976
No 117
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=4.7e-08 Score=108.36 Aligned_cols=172 Identities=23% Similarity=0.304 Sum_probs=120.3
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCC---CCcce---EEEEEecCHHHHHHHHHHhCCceeCC
Q 002709 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT---GLSKG---FAFVKFTCKRDAESAIQKFNGQKFGK 285 (890)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~---g~~~g---~afV~F~~~e~A~~Al~~lng~~l~g 285 (890)
...-.+.|||++||++++|+.|...|..||.+. |..+..... -..+| |+|+.|+++...+.-+.. .....
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a---C~~~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA---CSEGE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH---Hhhcc
Confidence 344567899999999999999999999999876 666642211 12455 999999999888776654 33355
Q ss_pred eeEEEEeecCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHH
Q 002709 286 RPIAVDWAVPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKV 365 (890)
Q Consensus 286 ~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (890)
..+.+..+.|.-.-.. .....+...+.+|-.+
T Consensus 331 ~~~yf~vss~~~k~k~-----------------------------------------VQIrPW~laDs~fv~d------- 362 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKE-----------------------------------------VQIRPWVLADSDFVLD------- 362 (520)
T ss_pred cceEEEEecCcccccc-----------------------------------------eeEEeeEeccchhhhc-------
Confidence 5555555433210000 0000000000000000
Q ss_pred hhhcccCCCCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHH
Q 002709 366 LNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNE 445 (890)
Q Consensus 366 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee 445 (890)
....-.+.+||||++||--++.+
T Consensus 363 ---------------------------------------------------------~sq~lDprrTVFVGgvprpl~A~ 385 (520)
T KOG0129|consen 363 ---------------------------------------------------------HNQPIDPRRTVFVGGLPRPLTAE 385 (520)
T ss_pred ---------------------------------------------------------cCcccCccceEEecCCCCcchHH
Confidence 00023346899999999999999
Q ss_pred HHHHHHh-hCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHh
Q 002709 446 EVKQRFS-AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 492 (890)
Q Consensus 446 ~L~~~F~-~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~l 492 (890)
+|..+|. -||.|.++-|-.|+.-+.++|-|-|.|.+..+-.+||.+-
T Consensus 386 eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 386 ELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred HHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 9999999 6999999999999888999999999999999999999863
No 118
>smart00361 RRM_1 RNA recognition motif.
Probab=98.82 E-value=1.3e-08 Score=86.29 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=54.5
Q ss_pred HHHHHHhhc----cCCCeEEEE-EcccCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 002709 230 VNEIKDMFS----PVGLVWNVY-IPHNTDT--GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (890)
Q Consensus 230 e~~L~~~F~----~~G~I~~v~-i~~~~~~--g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V 290 (890)
+++|+++|+ .||.|.+|. |+.+..+ +.++|||||.|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999985 6665555 889999999999999999999999999999999986
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=5.7e-08 Score=107.67 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=116.5
Q ss_pred ccCCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCC--
Q 002709 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ-- 194 (890)
Q Consensus 117 ~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~-- 194 (890)
-...++.||||+||++++++.|...|..||.+. |..+...+ ..+..+...+-||+|+.|+++..++.-+.++..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~---~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKAN---SRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCcc---ccccCCCCCcccEEEEEecchHHHHHHHHHHhhcc
Confidence 345678999999999999999999999999865 34543211 011111122235999999999999988776532
Q ss_pred --ce-------ecCeEEEEec---------CCCCCCCCCCcEEEEccCCCCCCHHHHHHhhc-cCCCeEEEEEcccCCCC
Q 002709 195 --KE-------IKGGTVWARQ---------LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFS-PVGLVWNVYIPHNTDTG 255 (890)
Q Consensus 195 --~~-------i~g~~i~v~~---------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~~~~~g 255 (890)
.. +..+.+.|++ ......-....||||++||.-++.++|..+|. -||.|..+-|-.|++-+
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 11 1222232222 01122344567999999999999999999999 59999999999998778
Q ss_pred CcceEEEEEecCHHHHHHHHHH
Q 002709 256 LSKGFAFVKFTCKRDAESAIQK 277 (890)
Q Consensus 256 ~~~g~afV~F~~~e~A~~Al~~ 277 (890)
-++|-|=|.|.+..+-.+||..
T Consensus 411 YPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 411 YPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCcceeeecccHHHHHHHhh
Confidence 8999999999999999999985
No 120
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.2e-09 Score=108.26 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEE
Q 002709 428 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 507 (890)
Q Consensus 428 ~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l 507 (890)
++...|||+-|.+-+|+++|.-+|+.||.|.+|.|+++..||.+..||||+|.+.+++.+|.-.|+ ...|+.+.|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd-----NvLIDDrRI 311 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD-----NVLIDDRRI 311 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhc-----ceeeccceE
Confidence 346799999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccCh
Q 002709 508 TVLKALDK 515 (890)
Q Consensus 508 ~V~~a~~k 515 (890)
+|.++++-
T Consensus 312 HVDFSQSV 319 (479)
T KOG0415|consen 312 HVDFSQSV 319 (479)
T ss_pred Eeehhhhh
Confidence 99997754
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.5e-08 Score=106.38 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=80.3
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 002709 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (890)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~ 291 (890)
..++...|||.-|.+-+|.++|.-+|+.||.|.+|.|+++..||.+-.||||+|.+.+++++|.-+|++..|..+.|.|+
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 35567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCC
Q 002709 292 WAVPK 296 (890)
Q Consensus 292 ~a~pk 296 (890)
|++.-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 98754
No 122
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=5e-09 Score=103.52 Aligned_cols=138 Identities=19% Similarity=0.270 Sum_probs=117.7
Q ss_pred CCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceec
Q 002709 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (890)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (890)
..-+||||+|+-..++++-|.++|-..|+|..|.|+..+ ++..+ ||||.|.++-...-|+.-+||..+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~----------d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ----------DQEQK-FAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc----------cCCCc-eeeeecccccchhhhhhhcccchhc
Confidence 356899999999999999999999999999999998765 45555 9999999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCCCcEEEEcc----CCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHH
Q 002709 199 GGTVWARQLGGEGSKTQKWKLIIRN----IPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274 (890)
Q Consensus 199 g~~i~v~~~~~~~~~~~~~~l~V~n----Lp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A 274 (890)
+..+.+. ++.++ |...++++.+...|+..|.+..+++.++.. |+++.++||.+......-.+
T Consensus 76 ~~e~q~~-------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 76 EDEEQRT-------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred cchhhcc-------------cccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHH
Confidence 8887774 44455 667789999999999999999999998764 88999999988877666666
Q ss_pred HHHhCCc
Q 002709 275 IQKFNGQ 281 (890)
Q Consensus 275 l~~lng~ 281 (890)
+....+.
T Consensus 142 ~~~y~~l 148 (267)
T KOG4454|consen 142 LDLYQGL 148 (267)
T ss_pred hhhhccc
Confidence 6654443
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.66 E-value=6.3e-08 Score=95.63 Aligned_cols=83 Identities=25% Similarity=0.332 Sum_probs=76.6
Q ss_pred CCCcEEEEccCCCCCCHHHHHHhhccC-CCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 214 TQKWKLIIRNIPFKAKVNEIKDMFSPV-GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
.....+||..+|..+.+.+|..+|.+| |.|..+++.++..||.++|||||+|.+++.|.-|-+.||+..|.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345589999999999999999999998 7888888989999999999999999999999999999999999999999998
Q ss_pred ecCC
Q 002709 293 AVPK 296 (890)
Q Consensus 293 a~pk 296 (890)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7554
No 124
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.59 E-value=4.9e-08 Score=105.20 Aligned_cols=168 Identities=17% Similarity=0.252 Sum_probs=135.0
Q ss_pred CCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceec
Q 002709 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (890)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (890)
+..+++|++++...+.+.++-.++..+|.+..+.+.... ....++|++++.|...+.+..|+.......+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~---------~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~ 156 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLE---------DSLSSKGGLSVHFAGKSQFFAALEESGSKVLD 156 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhc---------cccccccceeeccccHHHHHHHHHhhhccccc
Confidence 467899999999999999888999999987776664433 36788999999999999999999864444554
Q ss_pred CeEEEEe-----c-----CCCCCCCCCCcEEE-EccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecC
Q 002709 199 GGTVWAR-----Q-----LGGEGSKTQKWKLI-IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (890)
Q Consensus 199 g~~i~v~-----~-----~~~~~~~~~~~~l~-V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~ 267 (890)
+..+... . ...........++| |+||+..+++++|+.+|..+|.|..++++.+..++...|||||.|..
T Consensus 157 ~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 157 GNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred cccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 4443221 0 00011222334555 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002709 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (890)
Q Consensus 268 ~e~A~~Al~~lng~~l~g~~I~V~~a~pk 296 (890)
...+..++.. ....+.++++.+.+..+.
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 237 GNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred chhHHHHhhc-ccCcccCcccccccCCCC
Confidence 9999999987 788899999999987654
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.59 E-value=1.4e-07 Score=93.14 Aligned_cols=83 Identities=22% Similarity=0.364 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhC-CCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeE
Q 002709 428 ELQNTIFICNLPFDLDNEEVKQRFSAF-GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 506 (890)
Q Consensus 428 ~~~~~l~V~NLp~~~tee~L~~~F~~f-G~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~ 506 (890)
.....+||..+|.-+.+.+|..+|.+| |.|..+++-++..||.++|||||+|.+.+.|.-|-+.|| ++.|.|+.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMN-----NYLl~e~l 121 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMN-----NYLLMEHL 121 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhh-----hhhhhhhe
Confidence 345689999999999999999999998 778888888999999999999999999999999999999 99999999
Q ss_pred EEEEEccCh
Q 002709 507 LTVLKALDK 515 (890)
Q Consensus 507 l~V~~a~~k 515 (890)
|.|.+-.+-
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 999986543
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=3.7e-08 Score=114.88 Aligned_cols=163 Identities=18% Similarity=0.197 Sum_probs=136.5
Q ss_pred ccCCCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 002709 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 196 (890)
Q Consensus 117 ~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~ 196 (890)
....++|||+|||+..+++.+|+..|..+|.|..|.|-... -+....||||.|.+...+-.|...+.+..
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~----------~~~esa~~f~~~~n~dmtp~ak~e~s~~~ 437 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH----------IKTESAYAFVSLLNTDMTPSAKFEESGPL 437 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC----------CCcccchhhhhhhccccCcccchhhcCCc
Confidence 45678999999999999999999999999999998884332 35556799999999999999999998888
Q ss_pred ecCeEEEEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHH
Q 002709 197 IKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276 (890)
Q Consensus 197 i~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~ 276 (890)
|....+.+.-.. ......+.++|++|+.++....|...|..||.|..|.+-. ...||||.|.+...|+.|+.
T Consensus 438 I~~g~~r~glG~--~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 438 IGNGTHRIGLGQ--PKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATH 509 (975)
T ss_pred cccCcccccccc--cccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHH
Confidence 876665553221 1445667999999999999999999999999999876643 45699999999999999999
Q ss_pred HhCCceeCC--eeEEEEeecCCC
Q 002709 277 KFNGQKFGK--RPIAVDWAVPKN 297 (890)
Q Consensus 277 ~lng~~l~g--~~I~V~~a~pk~ 297 (890)
.|-|..|+| +.|.|.|+.+..
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred HHhcCcCCCCCcccccccccCCC
Confidence 999999954 679999987543
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.54 E-value=3e-07 Score=101.64 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCe
Q 002709 426 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 505 (890)
Q Consensus 426 ~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr 505 (890)
....+++|||.+|...+...+|+++|++||.|+-.+|+.+..+.-.++|+||++.+.++|.+||..|| -..|+|+
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH-----rTELHGr 475 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH-----RTELHGR 475 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh-----hhhhcce
Confidence 34567999999999999999999999999999999999888777789999999999999999999999 8999999
Q ss_pred EEEEEEccCh
Q 002709 506 QLTVLKALDK 515 (890)
Q Consensus 506 ~l~V~~a~~k 515 (890)
.|.|..+.+.
T Consensus 476 mISVEkaKNE 485 (940)
T KOG4661|consen 476 MISVEKAKNE 485 (940)
T ss_pred eeeeeecccC
Confidence 9999998753
No 128
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=2e-08 Score=99.37 Aligned_cols=80 Identities=23% Similarity=0.296 Sum_probs=70.3
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 002709 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (890)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~ 291 (890)
.....++|||.||-..++|+-|.++|-+.|+|..|.|+.+.. +..+ ||||.|.++.....|+..|||..+.+..|.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 344567999999999999999999999999999999988764 5455 99999999999999999999999988888876
Q ss_pred ee
Q 002709 292 WA 293 (890)
Q Consensus 292 ~a 293 (890)
+-
T Consensus 83 ~r 84 (267)
T KOG4454|consen 83 LR 84 (267)
T ss_pred cc
Confidence 53
No 129
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.52 E-value=7.4e-08 Score=103.82 Aligned_cols=177 Identities=18% Similarity=0.234 Sum_probs=138.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCC-ceeCCeeEEEEee
Q 002709 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG-QKFGKRPIAVDWA 293 (890)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng-~~l~g~~I~V~~a 293 (890)
..+++|++++...+.+.++..++..+|.+..+.+........++|+++|.|...+.+..|+.. .+ ..+.++.+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccccccccCccc
Confidence 457899999999999999999999999887777776666778999999999999999999995 44 3555555544433
Q ss_pred cCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCC
Q 002709 294 VPKNIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTT 373 (890)
Q Consensus 294 ~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (890)
...........
T Consensus 166 ~~~~~~~~n~~--------------------------------------------------------------------- 176 (285)
T KOG4210|consen 166 TRRGLRPKNKL--------------------------------------------------------------------- 176 (285)
T ss_pred ccccccccchh---------------------------------------------------------------------
Confidence 22110000000
Q ss_pred CCCCCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEE-EcCCCCCCCHHHHHHHHh
Q 002709 374 GSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIF-ICNLPFDLDNEEVKQRFS 452 (890)
Q Consensus 374 g~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~-V~NLp~~~tee~L~~~F~ 452 (890)
.........++| |.||++.+++++|+.+|.
T Consensus 177 -------------------------------------------------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~ 207 (285)
T KOG4210|consen 177 -------------------------------------------------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFV 207 (285)
T ss_pred -------------------------------------------------cccccCccccceeecccccccchHHHhhhcc
Confidence 000111223555 999999999999999999
Q ss_pred hCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChh
Q 002709 453 AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 516 (890)
Q Consensus 453 ~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k~ 516 (890)
.+|.|..++++.++.++.+.|||||.|.....+..++.. . ...+.++++.+.+..+..
T Consensus 208 ~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 208 SSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-Q-----TRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred CcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-c-----cCcccCcccccccCCCCc
Confidence 999999999999999999999999999999999999987 6 788999999999877653
No 130
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=2.9e-07 Score=97.30 Aligned_cols=79 Identities=27% Similarity=0.400 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeE
Q 002709 427 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 506 (890)
Q Consensus 427 ~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~ 506 (890)
+..-.+|||++|-..+++.+|+++|.+||.|+++.++.. +++|||.|.+.++|+.|.+.+-. -..++|.+
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n----~lvI~G~R 294 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFN----KLVINGFR 294 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcc----eeeecceE
Confidence 334579999999999999999999999999999988654 57999999999999999877642 67889999
Q ss_pred EEEEEccCh
Q 002709 507 LTVLKALDK 515 (890)
Q Consensus 507 l~V~~a~~k 515 (890)
|.|.|+.++
T Consensus 295 l~i~Wg~~~ 303 (377)
T KOG0153|consen 295 LKIKWGRPK 303 (377)
T ss_pred EEEEeCCCc
Confidence 999999883
No 131
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.45 E-value=3.1e-07 Score=105.71 Aligned_cols=77 Identities=19% Similarity=0.440 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002709 429 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 508 (890)
Q Consensus 429 ~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~ 508 (890)
.++||||++|+..+++.+|..+|+.||.|.+|.++. ++|||||++....+|.+|+.+|+ ...+.++.|+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~-----n~kv~~k~Ik 488 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLS-----NVKVADKTIK 488 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHh-----cccccceeeE
Confidence 468999999999999999999999999999997653 58999999999999999999999 8999999999
Q ss_pred EEEccChh
Q 002709 509 VLKALDKK 516 (890)
Q Consensus 509 V~~a~~k~ 516 (890)
|.||..+-
T Consensus 489 i~Wa~g~G 496 (894)
T KOG0132|consen 489 IAWAVGKG 496 (894)
T ss_pred EeeeccCC
Confidence 99999763
No 132
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.41 E-value=4.2e-07 Score=104.65 Aligned_cols=77 Identities=27% Similarity=0.519 Sum_probs=72.1
Q ss_pred CcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002709 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (890)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~p 295 (890)
++||||++|+..+++.+|..+|+.||.|.+|.++. ++|||||......+|.+|+.+|+...+.++.|+|.|+.-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 57999999999999999999999999999998876 789999999999999999999999999999999999976
Q ss_pred CCC
Q 002709 296 KNI 298 (890)
Q Consensus 296 k~~ 298 (890)
+..
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 543
No 133
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=6.3e-07 Score=94.76 Aligned_cols=78 Identities=28% Similarity=0.385 Sum_probs=68.6
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCeeEEE
Q 002709 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF-NGQKFGKRPIAV 290 (890)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l-ng~~l~g~~I~V 290 (890)
......+|||++|-..+++.+|+++|-+||.|.+|.+.. ..++|||+|.+.+.|+.|...+ +...|.|.+|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec------ccccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 344567999999999999999999999999999999876 4569999999999999998764 555679999999
Q ss_pred EeecC
Q 002709 291 DWAVP 295 (890)
Q Consensus 291 ~~a~p 295 (890)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99987
No 134
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.39 E-value=2.2e-07 Score=94.18 Aligned_cols=159 Identities=13% Similarity=0.123 Sum_probs=117.3
Q ss_pred EEEcCCCccchHHH-H--HHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 002709 124 VIIGGLLNADMAEE-V--HRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (890)
Q Consensus 124 v~V~nLp~~~te~~-L--~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~ 200 (890)
.+++++-..+..+- | ...|+.+-.....+++.+. .+..++++|+.|.....-.++-..-+++.+.-.
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~----------p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~ 168 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR----------PQPIRPEAFESFKASDALLKAETEKEKKKIGKP 168 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcC----------CCccCcccccCcchhhhhhhhccccccccccCc
Confidence 44555544443332 2 4556665554444444432 467789999999877776666555556555544
Q ss_pred EEEEecC------CCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHH
Q 002709 201 TVWARQL------GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274 (890)
Q Consensus 201 ~i~v~~~------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A 274 (890)
.|+.... ..........+||.+.|.-.++++-|-..|.+|-.....+++++..||+++||+||.|.+..++..|
T Consensus 169 ~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 169 PVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred ceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHH
Confidence 4443211 0112345678999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHhCCceeCCeeEEEEe
Q 002709 275 IQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 275 l~~lng~~l~g~~I~V~~ 292 (890)
+..|+|..++.++|.+.-
T Consensus 249 mrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 249 MREMNGKYVGSRPIKLRK 266 (290)
T ss_pred HHhhcccccccchhHhhh
Confidence 999999999999998753
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=2.1e-07 Score=108.87 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=130.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCe
Q 002709 426 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 505 (890)
Q Consensus 426 ~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr 505 (890)
+...+++||++||+..+++.+|+-.|..||.|..|.|-... -+....||||.|.+...+-.|+..+. +..|..-
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s-----~~~I~~g 441 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEES-----GPLIGNG 441 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhc-----CCccccC
Confidence 34457899999999999999999999999999998775442 44556799999999999999998887 6666555
Q ss_pred EEEEEEccChhhhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCCccCeE
Q 002709 506 QLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRL 585 (890)
Q Consensus 506 ~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L 585 (890)
.+.+.+..++ ....+.+
T Consensus 442 ~~r~glG~~k---------------------------------------------------------------st~ttr~ 458 (975)
T KOG0112|consen 442 THRIGLGQPK---------------------------------------------------------------STPTTRL 458 (975)
T ss_pred cccccccccc---------------------------------------------------------------cccceee
Confidence 5555443321 0124789
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCC
Q 002709 586 VIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKT 665 (890)
Q Consensus 586 ~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~~~~ 665 (890)
++..|+.++....|...|.+ ||.|..|.+- +.--||+|.|.++..|+.|++.|.|.| +
T Consensus 459 ~sgglg~w~p~~~l~r~fd~---------fGpir~Idy~------------hgq~yayi~yes~~~aq~a~~~~rgap-~ 516 (975)
T KOG0112|consen 459 QSGGLGPWSPVSRLNREFDR---------FGPIRIIDYR------------HGQPYAYIQYESPPAAQAATHDMRGAP-L 516 (975)
T ss_pred ccCCCCCCChHHHHHHHhhc---------cCcceeeecc------------cCCcceeeecccCccchhhHHHHhcCc-C
Confidence 99999999999999999996 9999887553 235699999999999999999999985 3
Q ss_pred CCCCCccEEEEecc
Q 002709 666 FGPEHRPIVEFAVD 679 (890)
Q Consensus 666 ~g~~~rliV~~A~e 679 (890)
=++.+++.|.||.+
T Consensus 517 G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 517 GGPPRRLRVDLASP 530 (975)
T ss_pred CCCCcccccccccC
Confidence 45567777999953
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.36 E-value=3e-07 Score=93.20 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=75.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEE
Q 002709 431 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 510 (890)
Q Consensus 431 ~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~ 510 (890)
..||.+.|.-+++++.|...|.+|-.-...+++++..||+++||+||.|.+..++..|+..|+ |.+++.++|.+.
T Consensus 191 fRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~-----gkyVgsrpiklR 265 (290)
T KOG0226|consen 191 FRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN-----GKYVGSRPIKLR 265 (290)
T ss_pred ceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhc-----ccccccchhHhh
Confidence 689999999999999999999999988888999999999999999999999999999999999 999999999887
Q ss_pred EccChh
Q 002709 511 KALDKK 516 (890)
Q Consensus 511 ~a~~k~ 516 (890)
....+.
T Consensus 266 kS~wke 271 (290)
T KOG0226|consen 266 KSEWKE 271 (290)
T ss_pred hhhHHh
Confidence 655443
No 137
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.25 E-value=1.6e-06 Score=96.00 Aligned_cols=81 Identities=20% Similarity=0.330 Sum_probs=75.2
Q ss_pred CCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002709 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (890)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a 293 (890)
...++|||.+|...+-..+|+.+|++||.|...+|+.+..+--.++|+||++.+.++|.+||..|+...|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34678999999999999999999999999999999988777668999999999999999999999999999999999987
Q ss_pred c
Q 002709 294 V 294 (890)
Q Consensus 294 ~ 294 (890)
.
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 5
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.24 E-value=3e-06 Score=88.13 Aligned_cols=82 Identities=23% Similarity=0.406 Sum_probs=74.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEE
Q 002709 431 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 510 (890)
Q Consensus 431 ~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~ 510 (890)
..|+|.|||+.|++++|+++|..||.+..+.+-+++ .|.+.|+|-|.|...++|..|++.++ ++.++|+.|.+.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~-----gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYN-----GVALDGRPMKIE 157 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhc-----CcccCCceeeeE
Confidence 689999999999999999999999998888777775 89999999999999999999999999 999999999999
Q ss_pred EccChhhh
Q 002709 511 KALDKKLA 518 (890)
Q Consensus 511 ~a~~k~~~ 518 (890)
...+....
T Consensus 158 ~i~~~~~~ 165 (243)
T KOG0533|consen 158 IISSPSQS 165 (243)
T ss_pred EecCcccc
Confidence 87765444
No 139
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.21 E-value=2e-05 Score=70.54 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=66.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 002709 582 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 661 (890)
Q Consensus 582 ~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng 661 (890)
+|+|.|+|||...|.++|.+++... -.|...-+-++.|..+. -+.|||||.|.+++.|..-.+.++|
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~-------~~g~yDF~YLPiDf~~~------~N~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEH-------FKGKYDFFYLPIDFKNK------CNLGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHh-------ccCcceEEEeeeeccCC------CceEEEEEEcCCHHHHHHHHHHHcC
Confidence 3799999999999999999999874 25778888888887665 6899999999999999999999999
Q ss_pred CCCCCCC-CCccE-EEEe
Q 002709 662 NPKTFGP-EHRPI-VEFA 677 (890)
Q Consensus 662 ~~~~~g~-~~rli-V~~A 677 (890)
.+ |-.. ..++. |.||
T Consensus 68 ~~-w~~~~s~Kvc~i~yA 84 (97)
T PF04059_consen 68 KK-WPNFNSKKVCEISYA 84 (97)
T ss_pred Cc-cccCCCCcEEEEehh
Confidence 73 3211 13333 7777
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.21 E-value=6.5e-06 Score=73.62 Aligned_cols=78 Identities=28% Similarity=0.435 Sum_probs=69.0
Q ss_pred cEEEEccCCCCCCHHHHHHhhcc--CCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC----CeeEEE
Q 002709 217 WKLIIRNIPFKAKVNEIKDMFSP--VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG----KRPIAV 290 (890)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~--~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~----g~~I~V 290 (890)
+||+|+|||...|.++|.+++.. .|...-+-+|.|..++.+.|||||.|.+++.|......++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988876 367777889999889999999999999999999999999999884 566778
Q ss_pred Eeec
Q 002709 291 DWAV 294 (890)
Q Consensus 291 ~~a~ 294 (890)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8875
No 141
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.20 E-value=4.1e-06 Score=87.15 Aligned_cols=84 Identities=27% Similarity=0.459 Sum_probs=75.8
Q ss_pred CCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002709 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (890)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a 293 (890)
.....|+|.|||+.+++++|+++|..||.+..+.|..++ .|.+.|.|-|.|...++|..|++.++|..+.|++|.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344789999999999999999999999999888888876 6889999999999999999999999999999999999887
Q ss_pred cCCCC
Q 002709 294 VPKNI 298 (890)
Q Consensus 294 ~pk~~ 298 (890)
.+...
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 65543
No 142
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.12 E-value=2.1e-06 Score=91.79 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=62.8
Q ss_pred EEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCC---CCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002709 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (890)
Q Consensus 218 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~---g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a 293 (890)
.|.|.||.+++|.++++.+|...|.|..+.|+.+... ......|||.|.+...+..|-. |.++.|-++.|.|-.+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 7999999999999999999999999999988764322 2356689999999999887776 7888888888877654
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.06 E-value=6.7e-06 Score=92.33 Aligned_cols=80 Identities=26% Similarity=0.335 Sum_probs=68.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002709 429 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 508 (890)
Q Consensus 429 ~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~ 508 (890)
...+|||+|||++++..+|.++|..||.|....|......+...+||||.|.+.++++.||.+. -..+++++|.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As------p~~ig~~kl~ 360 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS------PLEIGGRKLN 360 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC------ccccCCeeEE
Confidence 4566999999999999999999999999999877765433444499999999999999999875 4889999999
Q ss_pred EEEccC
Q 002709 509 VLKALD 514 (890)
Q Consensus 509 V~~a~~ 514 (890)
|.-..+
T Consensus 361 Veek~~ 366 (419)
T KOG0116|consen 361 VEEKRP 366 (419)
T ss_pred EEeccc
Confidence 987554
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.01 E-value=1.4e-05 Score=91.32 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCC---CCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeec
Q 002709 427 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV---TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 503 (890)
Q Consensus 427 ~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~---~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~ 503 (890)
++..++|||+||++.++++.|...|..||+|.+++|+.... ..+.+.||||.|.+..+|++|+..|+ |..+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lq-----g~iv~ 245 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQ-----GIIVM 245 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhc-----ceeee
Confidence 44568999999999999999999999999999999987552 23578899999999999999999999 99999
Q ss_pred CeEEEEEEcc
Q 002709 504 GRQLTVLKAL 513 (890)
Q Consensus 504 Gr~l~V~~a~ 513 (890)
+..+.+.|+.
T Consensus 246 ~~e~K~gWgk 255 (877)
T KOG0151|consen 246 EYEMKLGWGK 255 (877)
T ss_pred eeeeeecccc
Confidence 9999999984
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.98 E-value=1.1e-05 Score=84.36 Aligned_cols=83 Identities=23% Similarity=0.374 Sum_probs=76.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
......+||+|+.+.+|.+++..+|+.||.|..+.|+.+...|.++|||||+|.+.+.+..|+. |+|..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3455689999999999999999999999999999999999888999999999999999999999 999999999999998
Q ss_pred ecCC
Q 002709 293 AVPK 296 (890)
Q Consensus 293 a~pk 296 (890)
..-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7543
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.90 E-value=1.6e-05 Score=89.40 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=67.7
Q ss_pred CcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002709 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (890)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~p 295 (890)
..+|||+|||.+++..+|.++|..||.|....|......++..+||||+|.+.+++..||.+ +-..|+++++.|+--.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34599999999999999999999999999888876443455559999999999999999996 67788999999986543
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.86 E-value=2.7e-05 Score=89.22 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=73.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccC---CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT---DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~---~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~ 289 (890)
.+..++|||+||++.++++.|...|..||+|.+|+|+... +..+.+.||||-|.+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4556899999999999999999999999999999987643 2245677999999999999999999999999999999
Q ss_pred EEeecC
Q 002709 290 VDWAVP 295 (890)
Q Consensus 290 V~~a~p 295 (890)
+-|+.+
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999843
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.84 E-value=9.3e-06 Score=86.98 Aligned_cols=151 Identities=11% Similarity=0.111 Sum_probs=116.0
Q ss_pred cEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 002709 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (890)
Q Consensus 122 rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~ 201 (890)
..|.|.||.+.++.++++.+|...|.|..+.++.+-+ ...-......|||.|.+...+..|-. |.+..+-+..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~------d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdra 80 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVD------DSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRA 80 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCC------CccCcceeeeEEEeccCCcceeHHhh-hccceeeeee
Confidence 3789999999999999999999999999999865432 11223456789999999998887754 7777777787
Q ss_pred EEEecCCCCCC--------------------------------------------------------CCCCcEEEEccCC
Q 002709 202 VWARQLGGEGS--------------------------------------------------------KTQKWKLIIRNIP 225 (890)
Q Consensus 202 i~v~~~~~~~~--------------------------------------------------------~~~~~~l~V~nLp 225 (890)
+.|.+...... ..-..+|+|.+|+
T Consensus 81 liv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~ 160 (479)
T KOG4676|consen 81 LIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLI 160 (479)
T ss_pred EEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcch
Confidence 77654221000 0012579999999
Q ss_pred CCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 002709 226 FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (890)
Q Consensus 226 ~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~ 284 (890)
..+...++-+.|..+|.|....+.. +....+|.|.|........|+.. +|..+.
T Consensus 161 ~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 161 SAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 9999999999999999988766643 44667888999999999999984 776655
No 149
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=2.4e-05 Score=87.98 Aligned_cols=72 Identities=28% Similarity=0.450 Sum_probs=63.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeE
Q 002709 427 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 506 (890)
Q Consensus 427 ~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~ 506 (890)
....++|+|-|||..|++++|+.+|+.||+|..|+. +-..+|.+||+|.+.-+|++|+++|+ +..+.|+.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~-----~~~~~~~~ 141 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALN-----RREIAGKR 141 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHH-----HHHhhhhh
Confidence 445689999999999999999999999999999754 33468999999999999999999999 88888777
Q ss_pred EE
Q 002709 507 LT 508 (890)
Q Consensus 507 l~ 508 (890)
|.
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 66
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.74 E-value=3.1e-06 Score=91.18 Aligned_cols=154 Identities=21% Similarity=0.279 Sum_probs=122.4
Q ss_pred EEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCCeeEEEEeecCC
Q 002709 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGKRPIAVDWAVPK 296 (890)
Q Consensus 218 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~-l~g~~I~V~~a~pk 296 (890)
.+|++||.+.++..+|..+|.....-.+-.++. ..|||||.+.+...|.+|++.++|.. +.|.++.|.++.|+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 589999999999999999998642111111111 45899999999999999999999975 78999999887655
Q ss_pred CCcCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCC
Q 002709 297 NIYSSGGAAAGAYEDGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 376 (890)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 376 (890)
...
T Consensus 77 kqr----------------------------------------------------------------------------- 79 (584)
T KOG2193|consen 77 KQR----------------------------------------------------------------------------- 79 (584)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 310
Q ss_pred CCCCCchhhccCCCCCCCchhhccccccccccccccCCCCCCcccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhCCC
Q 002709 377 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 456 (890)
Q Consensus 377 p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~ 456 (890)
.+.+-|+|+|+....+-|..++..||.
T Consensus 80 -----------------------------------------------------srk~Qirnippql~wevld~Ll~qyg~ 106 (584)
T KOG2193|consen 80 -----------------------------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGT 106 (584)
T ss_pred -----------------------------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCC
Confidence 245889999999999999999999999
Q ss_pred eEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccCh
Q 002709 457 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 515 (890)
Q Consensus 457 I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~k 515 (890)
+..|..+. +....-..-|.|.+.+.+..||..++ |..|....+.|.|-...
T Consensus 107 ve~~eqvn---t~~etavvnvty~~~~~~~~ai~kl~-----g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 107 VENCEQVN---TDSETAVVNVTYSAQQQHRQAIHKLN-----GPQLENQHLKVGYIPDE 157 (584)
T ss_pred HhHhhhhc---cchHHHHHHHHHHHHHHHHHHHHhhc-----chHhhhhhhhcccCchh
Confidence 99986532 22223345578999999999999999 99999999999986544
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.68 E-value=4.1e-06 Score=90.25 Aligned_cols=150 Identities=19% Similarity=0.247 Sum_probs=118.4
Q ss_pred EEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCc-eecCeE
Q 002709 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK-EIKGGT 201 (890)
Q Consensus 123 tv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~-~i~g~~ 201 (890)
.+||+||.+.++..+|..+|... +++.++. ---..||+||.+.+...|.+|++.++|. .+.|+.
T Consensus 3 klyignL~p~~~psdl~svfg~a------k~~~~g~---------fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr 67 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA------KIPGSGQ---------FLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKR 67 (584)
T ss_pred cccccccCCCCChHHHHHHhccc------cCCCCcc---------eeeecceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence 47999999999999999999866 3332222 1113479999999999999999999885 678888
Q ss_pred EEEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcc-cCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 002709 202 VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPH-NTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (890)
Q Consensus 202 i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~-~~~~g~~~g~afV~F~~~e~A~~Al~~lng 280 (890)
+.+...-. .....+.+-|+|+|+....+-|..+...||.+..|.... +. -.-..-|+|.+.+.++.||..|+|
T Consensus 68 ~e~~~sv~--kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~----etavvnvty~~~~~~~~ai~kl~g 141 (584)
T KOG2193|consen 68 QEVEHSVP--KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS----ETAVVNVTYSAQQQHRQAIHKLNG 141 (584)
T ss_pred eeccchhh--HHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch----HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 87744322 233445699999999999999999999999999886642 22 222344789999999999999999
Q ss_pred ceeCCeeEEEEee
Q 002709 281 QKFGKRPIAVDWA 293 (890)
Q Consensus 281 ~~l~g~~I~V~~a 293 (890)
..|....+.|.|.
T Consensus 142 ~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 142 PQLENQHLKVGYI 154 (584)
T ss_pred hHhhhhhhhcccC
Confidence 9999999999886
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.68 E-value=0.00023 Score=60.71 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=47.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 002709 583 TRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 662 (890)
Q Consensus 583 ~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~ 662 (890)
+.|+|.|||...+...|+.-+....-.| -|.|.+| +.+.|+|.|.+++.|.+|+.-|+|-
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNC----GGkVl~v----------------~~~tAilrF~~~~~A~RA~KRmegE 62 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNC----GGKVLSV----------------SGGTAILRFPNQEFAERAQKRMEGE 62 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTT----T--EEE------------------TT-EEEEESSHHHHHHHHHHHTT-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhcc----CCEEEEE----------------eCCEEEEEeCCHHHHHHHHHhhccc
Confidence 4699999999988766655444322222 4566655 3589999999999999999999996
Q ss_pred CCCCCCCCccEEEEecc
Q 002709 663 PKTFGPEHRPIVEFAVD 679 (890)
Q Consensus 663 ~~~~g~~~rliV~~A~e 679 (890)
.+|| .++.|.|...
T Consensus 63 -dVfG--~kI~v~~~~~ 76 (90)
T PF11608_consen 63 -DVFG--NKISVSFSPK 76 (90)
T ss_dssp --SSS--S--EEESS--
T ss_pred -cccc--ceEEEEEcCC
Confidence 7898 8999999953
No 153
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.67 E-value=4.8e-05 Score=79.57 Aligned_cols=78 Identities=17% Similarity=0.306 Sum_probs=73.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002709 430 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 509 (890)
Q Consensus 430 ~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V 509 (890)
...+||+|+.+.+|.+++..+|+.||.|..+.+..+...+.++||+||.|.+.+.+..|+. |+ +..|.|+.+.|
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~-----gs~i~~~~i~v 174 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LD-----GSEIPGPAIEV 174 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cC-----Cccccccccee
Confidence 4689999999999999999999999999999999999898999999999999999999999 99 99999999999
Q ss_pred EEcc
Q 002709 510 LKAL 513 (890)
Q Consensus 510 ~~a~ 513 (890)
.+..
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 9865
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.47 E-value=0.00032 Score=59.87 Aligned_cols=68 Identities=28% Similarity=0.391 Sum_probs=47.6
Q ss_pred CeEEEcCCCCCCCHHHHH----HHHhhCC-CeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCe
Q 002709 431 NTIFICNLPFDLDNEEVK----QRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 505 (890)
Q Consensus 431 ~~l~V~NLp~~~tee~L~----~~F~~fG-~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr 505 (890)
..|||.|||.+.+...|+ .++..+| .|.+| ..+.|+|.|.+.+.|.+|.+.|+ |-.+.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRme-----gEdVfG~ 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRME-----GEDVFGN 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHT-----T--SSSS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhc-----ccccccc
Confidence 479999999999876654 5556776 45554 25789999999999999999999 9999999
Q ss_pred EEEEEEcc
Q 002709 506 QLTVLKAL 513 (890)
Q Consensus 506 ~l~V~~a~ 513 (890)
.|.|.+..
T Consensus 68 kI~v~~~~ 75 (90)
T PF11608_consen 68 KISVSFSP 75 (90)
T ss_dssp --EEESS-
T ss_pred eEEEEEcC
Confidence 99999864
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.46 E-value=0.00026 Score=64.86 Aligned_cols=75 Identities=28% Similarity=0.355 Sum_probs=48.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEE
Q 002709 431 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 510 (890)
Q Consensus 431 ~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~ 510 (890)
+.|+|.+++..++.++|+++|+.||.|.+|.+.. ....|||.|.+.+.|+.|+..+....+.+..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~------G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR------GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T------T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC------CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5799999999999999999999999999987643 2457999999999999999999755444567777777666
Q ss_pred E
Q 002709 511 K 511 (890)
Q Consensus 511 ~ 511 (890)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 5
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.07 E-value=0.0005 Score=73.98 Aligned_cols=85 Identities=26% Similarity=0.360 Sum_probs=76.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccCCCeE--------EEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW--------NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~ 284 (890)
.....+|||-+||..+++.+|.++|.++|.|. .|.|.++.+|+..++-|.|.|.+...|+.|+..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567999999999999999999999999764 4677888899999999999999999999999999999999
Q ss_pred CeeEEEEeecCCC
Q 002709 285 KRPIAVDWAVPKN 297 (890)
Q Consensus 285 g~~I~V~~a~pk~ 297 (890)
+..|.|.++....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998886543
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.07 E-value=0.0012 Score=60.48 Aligned_cols=70 Identities=20% Similarity=0.295 Sum_probs=44.2
Q ss_pred cEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCc-----eeCCeeEEEE
Q 002709 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ-----KFGKRPIAVD 291 (890)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~-----~l~g~~I~V~ 291 (890)
+.|+|.+++..++-++|++.|+.||.|..|.+.. ....|||.|.+++.|+.|+..+.-. .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~------G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR------GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T------T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC------CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5789999999999999999999999999988876 2346999999999999999876433 4566555554
Q ss_pred e
Q 002709 292 W 292 (890)
Q Consensus 292 ~ 292 (890)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.03 E-value=0.00058 Score=73.52 Aligned_cols=82 Identities=22% Similarity=0.249 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhCCCeEE--------EEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCee
Q 002709 430 QNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 501 (890)
Q Consensus 430 ~~~l~V~NLp~~~tee~L~~~F~~fG~I~~--------v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~ 501 (890)
..+|||-+||..+++.+|.++|.++|.|.. |.|.+++.|+.+++-|.|.|.+...|+.|+.-++ +..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a-----gkd 140 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA-----GKD 140 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc-----ccc
Confidence 468999999999999999999999998753 6777888999999999999999999999999999 999
Q ss_pred ecCeEEEEEEccChh
Q 002709 502 LKGRQLTVLKALDKK 516 (890)
Q Consensus 502 l~Gr~l~V~~a~~k~ 516 (890)
|.|.+|.|.+|..+.
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999999987654
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.80 E-value=0.0027 Score=67.17 Aligned_cols=80 Identities=21% Similarity=0.415 Sum_probs=62.8
Q ss_pred CeEEEcCCCCCCCHHHH------HHHHhhCCCeEEEEEeecCCCC-CCCc-e-EEEEECCHHHHHHHHHHhccCCCCCee
Q 002709 431 NTIFICNLPFDLDNEEV------KQRFSAFGEVVSFVPVLHQVTK-RPKG-T-GFLKFKTVEAATAAVSASKTTSGLGIF 501 (890)
Q Consensus 431 ~~l~V~NLp~~~tee~L------~~~F~~fG~I~~v~i~~~~~~g-~~~g-~-aFV~F~~~e~A~~Ai~~ln~~~~~g~~ 501 (890)
.-+||-+||+.+..|++ .++|.+||.|..|.|-.....- ...+ + .||.|.+.++|.+||.+.+ |..
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vD-----gs~ 189 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD-----GSL 189 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhc-----ccc
Confidence 46899999999877763 4799999999988654432111 1122 2 3999999999999999999 999
Q ss_pred ecCeEEEEEEccCh
Q 002709 502 LKGRQLTVLKALDK 515 (890)
Q Consensus 502 l~Gr~l~V~~a~~k 515 (890)
++||.|...|...+
T Consensus 190 ~DGr~lkatYGTTK 203 (480)
T COG5175 190 LDGRVLKATYGTTK 203 (480)
T ss_pred ccCceEeeecCchH
Confidence 99999999997654
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.68 E-value=0.0031 Score=66.71 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=64.7
Q ss_pred CCcEEEEccCCCCCCHHHH------HHhhccCCCeEEEEEcccCCC-CCcceEE--EEEecCHHHHHHHHHHhCCceeCC
Q 002709 215 QKWKLIIRNIPFKAKVNEI------KDMFSPVGLVWNVYIPHNTDT-GLSKGFA--FVKFTCKRDAESAIQKFNGQKFGK 285 (890)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L------~~~F~~~G~I~~v~i~~~~~~-g~~~g~a--fV~F~~~e~A~~Al~~lng~~l~g 285 (890)
...-+||-+||+.+-.+++ .++|.+||.|..|.|-+...+ ....+.+ ||.|.+.++|.+||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3456899999988877663 479999999998888654311 1222334 999999999999999999999999
Q ss_pred eeEEEEeecCC
Q 002709 286 RPIAVDWAVPK 296 (890)
Q Consensus 286 ~~I~V~~a~pk 296 (890)
+.|+..|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999987654
No 161
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.58 E-value=0.004 Score=70.71 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=71.9
Q ss_pred hhhccCCCCCCCccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCC
Q 002709 569 KMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTE 648 (890)
Q Consensus 569 ~~~~~~~p~~~~s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t 648 (890)
...+..+|.-+.....|||.||=.-+|.-+|+.|+.+ -.|.|... +|. +-+-.|||.|.+
T Consensus 431 ~~~RvpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~r--------tgg~Vee~-WmD-----------kIKShCyV~yss 490 (718)
T KOG2416|consen 431 PKERVPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGR--------TGGNVEEF-WMD-----------KIKSHCYVSYSS 490 (718)
T ss_pred ccccCCCCCCCCccceEeeecccccchHHHHHHHHhh--------ccCchHHH-HHH-----------HhhcceeEeccc
Confidence 4445667777777889999999777899999999996 36666666 442 236789999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCccEEEEeccc
Q 002709 649 HQHALVALRVLNNNPKTFGPEHRPIVEFAVDN 680 (890)
Q Consensus 649 ~e~A~~Al~~Lng~~~~~g~~~rliV~~A~e~ 680 (890)
.++|.+-..+|||-.-.-+..++|++.|+.++
T Consensus 491 ~eEA~atr~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 491 VEEAAATREALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred HHHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence 99999999999995222244588999999654
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.47 E-value=0.0057 Score=63.03 Aligned_cols=79 Identities=23% Similarity=0.388 Sum_probs=65.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEE
Q 002709 432 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 511 (890)
Q Consensus 432 ~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~ 511 (890)
.|||.||+.-++.+.|..-|+.||.|....++.|. .+++.+-++|.|...-.|.+|...+.. .+.+....+++..|..
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~-~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCRE-GGFGGTTGGRPVGVEP 110 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhcc-CccccCCCCCccCCCh
Confidence 69999999999999999999999999987666664 678899999999999999999998852 2334555677777665
Q ss_pred c
Q 002709 512 A 512 (890)
Q Consensus 512 a 512 (890)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 3
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.25 E-value=0.008 Score=47.75 Aligned_cols=52 Identities=23% Similarity=0.561 Sum_probs=42.8
Q ss_pred cEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHH
Q 002709 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275 (890)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al 275 (890)
+.|-|.+.|.... +.+..+|..||.|..+.+.. ...++||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4788999987665 55666999999999988873 3457999999999999985
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.013 Score=66.32 Aligned_cols=79 Identities=24% Similarity=0.500 Sum_probs=64.3
Q ss_pred CCCcEEEEccCCCCCC------HHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee-CCe
Q 002709 214 TQKWKLIIRNIPFKAK------VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF-GKR 286 (890)
Q Consensus 214 ~~~~~l~V~nLp~~~t------e~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l-~g~ 286 (890)
.-...|+|-|+|---. ..-|..+|+++|.|..+.++.+..+| .+||.|++|.+..+|..|++.|||..| ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3456899999985322 23456799999999999999887755 999999999999999999999999998 567
Q ss_pred eEEEEee
Q 002709 287 PIAVDWA 293 (890)
Q Consensus 287 ~I~V~~a 293 (890)
++.|...
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 7777654
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.22 E-value=0.013 Score=46.57 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=42.6
Q ss_pred cEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHH
Q 002709 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASV 189 (890)
Q Consensus 122 rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai 189 (890)
+.|-|.|.+++..+. ++..|..||+|..+.+. ......||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~---------------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP---------------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC---------------CCCcEEEEEECCHHHHHhhC
Confidence 578899999877654 66699999999999883 23458999999999999985
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.02 E-value=0.018 Score=52.08 Aligned_cols=78 Identities=17% Similarity=0.251 Sum_probs=52.7
Q ss_pred CCcEEEEccCCCCCCHHHHHHhhccCCCeEEEE-EcccC------CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCee
Q 002709 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVY-IPHNT------DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (890)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~-i~~~~------~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~ 287 (890)
..+.|.|=+.|.. ....|...|+.||.|.+.. +.++. ..-....+..|.|.++.+|.+||.. ||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 3457888899887 5678889999999998764 11100 0012456899999999999999995 999998864
Q ss_pred -EEEEeec
Q 002709 288 -IAVDWAV 294 (890)
Q Consensus 288 -I~V~~a~ 294 (890)
+-|.|..
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4567663
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.96 E-value=0.0047 Score=63.56 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=61.7
Q ss_pred CCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCC--------CCcce----EEEEEecCHHHHHHHHHHhCCce
Q 002709 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT--------GLSKG----FAFVKFTCKRDAESAIQKFNGQK 282 (890)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~--------g~~~g----~afV~F~~~e~A~~Al~~lng~~ 282 (890)
....||+++||+.+...-|+++|+.||.|-+|.+.....+ |.+.+ -|.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3458999999999999999999999999999998765544 22332 26799999999999999999999
Q ss_pred eCCee
Q 002709 283 FGKRP 287 (890)
Q Consensus 283 l~g~~ 287 (890)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98865
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.93 E-value=0.012 Score=60.82 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=80.7
Q ss_pred HHHHHHHHhCCceecCeEEEEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEE
Q 002709 184 SACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 263 (890)
Q Consensus 184 ~A~~Ai~~ln~~~i~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV 263 (890)
-|..|-..|++....|+.+.|+.. ....|||.||+..+..+.|...|+.||.|....+..|. .++..+-++|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa-------~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v 77 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFA-------MHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIV 77 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEee-------ccceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchh
Confidence 356666779999999999999753 22689999999999999999999999999987777664 4788899999
Q ss_pred EecCHHHHHHHHHHhCCce----eCCeeEEEEe
Q 002709 264 KFTCKRDAESAIQKFNGQK----FGKRPIAVDW 292 (890)
Q Consensus 264 ~F~~~e~A~~Al~~lng~~----l~g~~I~V~~ 292 (890)
.|...-.|..|+..++-.- ..+++.-|..
T Consensus 78 ~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 78 EFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred hhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 9999999999999763222 2455555543
No 169
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.80 E-value=0.032 Score=47.91 Aligned_cols=60 Identities=22% Similarity=0.395 Sum_probs=45.0
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 002709 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (890)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng 280 (890)
.+......+|. +|..+...||.++|+.||.|. |..+.+. -|||...+.+.|..|+..+..
T Consensus 5 ~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 5 QPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp --SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 44556677787 999999999999999999987 6666543 499999999999999998753
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.78 E-value=0.043 Score=49.67 Aligned_cols=80 Identities=15% Similarity=0.039 Sum_probs=49.8
Q ss_pred CCcEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecC
Q 002709 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (890)
Q Consensus 120 ~~rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g 199 (890)
..+.|.|-+.|+.. ...|.++|++||.|++..-+..... ..+..+.......-.|+|.++.+|.+||.. ||..|.|
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~--~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g 80 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSS--GINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSG 80 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG------------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETT
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeeccccccc--ccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcC
Confidence 34579999999984 4567789999999988751110000 000000112345889999999999999985 9999988
Q ss_pred eEEE
Q 002709 200 GTVW 203 (890)
Q Consensus 200 ~~i~ 203 (890)
..+-
T Consensus 81 ~~mv 84 (100)
T PF05172_consen 81 SLMV 84 (100)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 6553
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.75 E-value=0.035 Score=63.00 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=64.6
Q ss_pred CCCCeEEEcCCCCCCC------HHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCee
Q 002709 428 ELQNTIFICNLPFDLD------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 501 (890)
Q Consensus 428 ~~~~~l~V~NLp~~~t------ee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~ 501 (890)
.....|+|-|+|.--. ..-|..+|+++|.|....++.+..+| ++||.|++|.+..+|+.|++.|| |..
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~-----G~~ 129 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLN-----GKR 129 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcc-----cce
Confidence 4457999999986432 23456899999999999888887555 89999999999999999999999 887
Q ss_pred ec-CeEEEEEEcc
Q 002709 502 LK-GRQLTVLKAL 513 (890)
Q Consensus 502 l~-Gr~l~V~~a~ 513 (890)
|+ .+++.|..-.
T Consensus 130 ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 130 LDKNHTFFVRLFK 142 (698)
T ss_pred ecccceEEeehhh
Confidence 75 6777776543
No 172
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.69 E-value=0.011 Score=64.90 Aligned_cols=66 Identities=24% Similarity=0.258 Sum_probs=56.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeec---CCCC--C--------CCceEEEEECCHHHHHHHHHHhc
Q 002709 428 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH---QVTK--R--------PKGTGFLKFKTVEAATAAVSASK 493 (890)
Q Consensus 428 ~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~---~~~g--~--------~~g~aFV~F~~~e~A~~Ai~~ln 493 (890)
-++++|.+.|||.+-.-+.|.++|+.+|.|..|+|+.. +.+. . .+-+|||+|...+.|.+|.+.|+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 35789999999999999999999999999999998765 3222 1 25679999999999999999997
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.55 E-value=0.0082 Score=61.83 Aligned_cols=72 Identities=15% Similarity=0.284 Sum_probs=60.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCC--------CCCC----ceEEEEECCHHHHHHHHHHhccCCC
Q 002709 430 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVT--------KRPK----GTGFLKFKTVEAATAAVSASKTTSG 497 (890)
Q Consensus 430 ~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~--------g~~~----g~aFV~F~~~e~A~~Ai~~ln~~~~ 497 (890)
...||+.+||+.+....|+++|+.||.|-.|.+.....+ |.++ .-|+|+|.+...|..+...||
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln---- 149 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN---- 149 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC----
Confidence 358999999999999999999999999999987665544 2222 237899999999999999999
Q ss_pred CCeeecCeE
Q 002709 498 LGIFLKGRQ 506 (890)
Q Consensus 498 ~g~~l~Gr~ 506 (890)
+..|+|+.
T Consensus 150 -n~~Iggkk 157 (278)
T KOG3152|consen 150 -NTPIGGKK 157 (278)
T ss_pred -CCccCCCC
Confidence 88888864
No 174
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.40 E-value=0.012 Score=62.59 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=69.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHhhccCC--CeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 215 QKWKLIIRNIPFKAKVNEIKDMFSPVG--LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
...++||+||-|.+|+++|.+.+...| .+.++++..++.+|.++|||+|...+.....+-++.|-...|.|..-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 345899999999999999999888876 477788888888899999999999999999999999999999888776654
Q ss_pred e
Q 002709 293 A 293 (890)
Q Consensus 293 a 293 (890)
.
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 3
No 175
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.31 E-value=0.015 Score=61.93 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=63.0
Q ss_pred CcEEEEcCCCccchHHHHHHHhhcCC--CeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceec
Q 002709 121 ARTVIIGGLLNADMAEEVHRLAGSIG--TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (890)
Q Consensus 121 ~rtv~V~nLp~~~te~~L~~~F~~~G--~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (890)
--++|||||.+++|.+||.+.....| .+.+++++-+. ..|.++|||+|...+.....+.++.|-...|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR---------~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH 150 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENR---------TNGQSKGYALLVLNSDAAVKQTMEILPTKTIH 150 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcc---------cCCcccceEEEEecchHHHHHHHHhcccceec
Confidence 34689999999999999999999888 46777775543 47999999999999999999999999888888
Q ss_pred CeEEEE
Q 002709 199 GGTVWA 204 (890)
Q Consensus 199 g~~i~v 204 (890)
|..-.|
T Consensus 151 GQ~P~V 156 (498)
T KOG4849|consen 151 GQSPTV 156 (498)
T ss_pred CCCCee
Confidence 765444
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.00 E-value=0.03 Score=61.63 Aligned_cols=69 Identities=25% Similarity=0.310 Sum_probs=56.9
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeec---ccCCccCCCCCc--------ceEEEEEeCCH
Q 002709 581 SRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQS---LKKGKVDTKHYS--------RGVAFVEFTEH 649 (890)
Q Consensus 581 s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd---~~~~~~~~~~~s--------rG~aFV~F~t~ 649 (890)
+..+|.+.|||.+-.-+.|.++|+ .+|.|..|+|+.- +..+ .+.+ +-+|||+|.+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg---------~~G~IksIRIckPgaip~d~----r~~~~~~~~~~tk~~AlvEye~~ 296 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFG---------TVGSIKSIRICKPGAIPEDV----RGFPKKYFELQTKECALVEYEEV 296 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhh---------cccceeeeeecCCCCCCccc----ccCCccchhhhhhhhhhhhhhhh
Confidence 457899999999999999999999 5999999999975 3222 2222 34899999999
Q ss_pred HHHHHHHHHhcCC
Q 002709 650 QHALVALRVLNNN 662 (890)
Q Consensus 650 e~A~~Al~~Lng~ 662 (890)
+.|.+|.+.||..
T Consensus 297 ~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 297 EAARKARELLNPE 309 (484)
T ss_pred HHHHHHHHhhchh
Confidence 9999999999775
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.95 E-value=0.011 Score=61.16 Aligned_cols=62 Identities=23% Similarity=0.396 Sum_probs=52.3
Q ss_pred HHHHHhhc-cCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002709 231 NEIKDMFS-PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (890)
Q Consensus 231 ~~L~~~F~-~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a 293 (890)
++|...|+ +||.|..+.|..+.. -.-.|-+||.|..+++|++|+..||+..|.|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 56666666 899999887765432 346788999999999999999999999999999999987
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.94 E-value=0.067 Score=56.09 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=59.9
Q ss_pred CeEEEcCC--CCCCC---HHHHHHHHhhCCCeEEEEEeecCCCCCC-CceEEEEECCHHHHHHHHHHhccCCCCCeeecC
Q 002709 431 NTIFICNL--PFDLD---NEEVKQRFSAFGEVVSFVPVLHQVTKRP-KGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 504 (890)
Q Consensus 431 ~~l~V~NL--p~~~t---ee~L~~~F~~fG~I~~v~i~~~~~~g~~-~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~G 504 (890)
+.|.++|+ +-.++ ++++.+.+.+||.|..|.|...+..... .--.||+|...++|.+|+-.|| |.+|+|
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdln-----GRyFGG 356 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLN-----GRYFGG 356 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcC-----Cceecc
Confidence 45666666 33343 4678899999999999977766532221 2347999999999999999999 999999
Q ss_pred eEEEEEEcc
Q 002709 505 RQLTVLKAL 513 (890)
Q Consensus 505 r~l~V~~a~ 513 (890)
|.+...|..
T Consensus 357 r~v~A~Fyn 365 (378)
T KOG1996|consen 357 RVVSACFYN 365 (378)
T ss_pred eeeeheecc
Confidence 999988743
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.83 E-value=0.056 Score=56.61 Aligned_cols=65 Identities=26% Similarity=0.253 Sum_probs=52.6
Q ss_pred HHHHHHhhccCCCeEEEEEcccCCCCC-cceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002709 230 VNEIKDMFSPVGLVWNVYIPHNTDTGL-SKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (890)
Q Consensus 230 e~~L~~~F~~~G~I~~v~i~~~~~~g~-~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~ 294 (890)
++++.+.+.+||.|..|.|...+..-. -.--.||+|...++|.+|+-.|||..|+|+.+...|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467889999999999988866542111 12237999999999999999999999999999998864
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.43 E-value=0.04 Score=62.94 Aligned_cols=78 Identities=14% Similarity=0.289 Sum_probs=63.9
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHhhcc-CCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---CCee
Q 002709 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSP-VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRP 287 (890)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l---~g~~ 287 (890)
.......|||.||-.-+|.-+|+.++.. .|.|....| |. -+..|||.|.+.++|..-+.+|||..+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3445679999999999999999999995 666666522 22 456799999999999999999999988 6778
Q ss_pred EEEEeecC
Q 002709 288 IAVDWAVP 295 (890)
Q Consensus 288 I~V~~a~p 295 (890)
|.+.|...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88888753
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.41 E-value=0.18 Score=48.48 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=52.6
Q ss_pred CCCcEEEEccCC-----CCCCH----HHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 002709 214 TQKWKLIIRNIP-----FKAKV----NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (890)
Q Consensus 214 ~~~~~l~V~nLp-----~~~te----~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~ 284 (890)
+...||.|.=+. ...-. .+|.+.|..||.+.-|++.-+ .-+|.|.+-.+|.+|+. |+|..++
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 345577777555 11222 367789999999887777653 37999999999999998 7999999
Q ss_pred CeeEEEEeecCC
Q 002709 285 KRPIAVDWAVPK 296 (890)
Q Consensus 285 g~~I~V~~a~pk 296 (890)
|+.|.|..-.|.
T Consensus 96 g~~l~i~LKtpd 107 (146)
T PF08952_consen 96 GRTLKIRLKTPD 107 (146)
T ss_dssp TEEEEEEE----
T ss_pred CEEEEEEeCCcc
Confidence 999999876543
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.93 E-value=0.19 Score=47.55 Aligned_cols=72 Identities=26% Similarity=0.269 Sum_probs=55.3
Q ss_pred CCCeEEEcCCCCCC----CHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecC
Q 002709 429 LQNTIFICNLPFDL----DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 504 (890)
Q Consensus 429 ~~~~l~V~NLp~~~----tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~G 504 (890)
+-.||.|+=|..++ +-..|...++.||+|.+|.+. .+..|.|.|.+..+|.+|+.++. ....|
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~------s~~pg 151 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQ------SRAPG 151 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhc------CCCCC
Confidence 34688887666555 334455667889999998653 35689999999999999999997 36678
Q ss_pred eEEEEEEcc
Q 002709 505 RQLTVLKAL 513 (890)
Q Consensus 505 r~l~V~~a~ 513 (890)
..+.+.|-.
T Consensus 152 tm~qCsWqq 160 (166)
T PF15023_consen 152 TMFQCSWQQ 160 (166)
T ss_pred ceEEeeccc
Confidence 889998854
No 183
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.79 E-value=0.032 Score=57.86 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=51.4
Q ss_pred HHHHHHHh-hCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEcc
Q 002709 445 EEVKQRFS-AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 513 (890)
Q Consensus 445 e~L~~~F~-~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~ 513 (890)
++|...|+ +||.|+.+.|..+ ....-.|-+||.|...++|++|++.|| +.++.|++|+..+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~ln-----nRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLN-----NRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHc-----CccccCCcceeeecC
Confidence 45555556 8999999865443 233467889999999999999999999 999999999998854
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.61 E-value=0.2 Score=50.56 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=51.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHhhcc-CCCe---EEEE--EcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---C
Q 002709 215 QKWKLIIRNIPFKAKVNEIKDMFSP-VGLV---WNVY--IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG---K 285 (890)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~I---~~v~--i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~---g 285 (890)
....|.|++||+++|++++.+.++. ++.- ..+. .......-....-|||.|.+.+++...+..++|..|. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4468999999999999999998887 6665 2332 2221111123456999999999999999999998872 2
Q ss_pred --eeEEEEee
Q 002709 286 --RPIAVDWA 293 (890)
Q Consensus 286 --~~I~V~~a 293 (890)
.+..|++|
T Consensus 86 ~~~~~~VE~A 95 (176)
T PF03467_consen 86 NEYPAVVEFA 95 (176)
T ss_dssp -EEEEEEEE-
T ss_pred CCcceeEEEc
Confidence 34566776
No 185
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.45 E-value=0.58 Score=45.07 Aligned_cols=72 Identities=28% Similarity=0.344 Sum_probs=50.7
Q ss_pred CCCeEEEcCCCC-----CCCH----HHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCC
Q 002709 429 LQNTIFICNLPF-----DLDN----EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLG 499 (890)
Q Consensus 429 ~~~~l~V~NLp~-----~~te----e~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g 499 (890)
+..||.|.=+.+ .... .+|.+.|..||.+.-++++ .+.-+|.|.+-+.|.+|+. ++ |
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv--------~~~mwVTF~dg~sALaals-~d-----g 91 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV--------GDTMWVTFRDGQSALAALS-LD-----G 91 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE--------TTCEEEEESSCHHHHHHHH-GC-----C
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe--------CCeEEEEECccHHHHHHHc-cC-----C
Confidence 345777764441 1223 3677889999998877665 2468999999999999986 77 9
Q ss_pred eeecCeEEEEEEccC
Q 002709 500 IFLKGRQLTVLKALD 514 (890)
Q Consensus 500 ~~l~Gr~l~V~~a~~ 514 (890)
..++|+.|.|....+
T Consensus 92 ~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 92 IQVNGRTLKIRLKTP 106 (146)
T ss_dssp SEETTEEEEEEE---
T ss_pred cEECCEEEEEEeCCc
Confidence 999999999998554
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.88 E-value=0.77 Score=37.62 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=43.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhC----CCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHh
Q 002709 431 NTIFICNLPFDLDNEEVKQRFSAF----GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 492 (890)
Q Consensus 431 ~~l~V~NLp~~~tee~L~~~F~~f----G~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~l 492 (890)
..|+|+|+. +++.++|+.+|..| + ...|..+-|. .|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999995 68889999999998 4 4566666553 5889999999999999865
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.03 E-value=0.76 Score=43.65 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=56.6
Q ss_pred CCCCcEEEEccCCCCCC----HHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 002709 213 KTQKWKLIIRNIPFKAK----VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~t----e~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I 288 (890)
.+...+|.|+=|..++. ...+...++.||+|.+|.+. .+.-|.|.|.+..+|-+|+.++.. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 44566888886665543 34455667789999998775 334599999999999999998765 6788899
Q ss_pred EEEeec
Q 002709 289 AVDWAV 294 (890)
Q Consensus 289 ~V~~a~ 294 (890)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 999864
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.87 E-value=0.79 Score=37.54 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=43.6
Q ss_pred cEEEEccCCCCCCHHHHHHhhccC----CCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHh
Q 002709 217 WKLIIRNIPFKAKVNEIKDMFSPV----GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278 (890)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l 278 (890)
..|+|+++. +++-++|+.+|..| ++ ..|..+-|. -|=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999985 68889999999998 54 457777664 2889999999999999864
No 189
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.79 E-value=0.63 Score=53.18 Aligned_cols=94 Identities=18% Similarity=0.305 Sum_probs=67.5
Q ss_pred HHHHHHHHHhCCceecCeEEEEecCCCCCCCCCCcEEEEccCCCCCCHHHHHHhhcc--CCCeEEEEEcccCCCCCcceE
Q 002709 183 KSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP--VGLVWNVYIPHNTDTGLSKGF 260 (890)
Q Consensus 183 e~A~~Ai~~ln~~~i~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~--~G~I~~v~i~~~~~~g~~~g~ 260 (890)
+-...++...-+..+..+...|++ ....+.|+++-||...-+++|+.||.. +-.+.+|.+-.+..
T Consensus 148 dLI~Evlresp~VqvDekgekVrp------~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------- 214 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRP------NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------- 214 (684)
T ss_pred HHHHHHHhcCCCceeccCcccccc------CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------
Confidence 333445555556666666666652 345578899999999999999999986 66788888866431
Q ss_pred EEEEecCHHHHHHHHHHhCCc--eeCCeeEE
Q 002709 261 AFVKFTCKRDAESAIQKFNGQ--KFGKRPIA 289 (890)
Q Consensus 261 afV~F~~~e~A~~Al~~lng~--~l~g~~I~ 289 (890)
=||+|.+..||+.|.+.|.-. .|.|++|-
T Consensus 215 WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 599999999999999876432 35555553
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.10 E-value=0.34 Score=48.86 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=50.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhh-CCCe---EEEEEeecC-CCC-CCCceEEEEECCHHHHHHHHHHhccCCCCCeeec
Q 002709 430 QNTIFICNLPFDLDNEEVKQRFSA-FGEV---VSFVPVLHQ-VTK-RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 503 (890)
Q Consensus 430 ~~~l~V~NLp~~~tee~L~~~F~~-fG~I---~~v~i~~~~-~~g-~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~ 503 (890)
...|.||+||+++|++++.+.+++ ++.. .++.-.... ... ....-|||.|.+.++....+..++ |+.|.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~-----g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD-----GHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT-----TEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC-----CcEEE
Confidence 468999999999999999998777 6655 333311221 111 123469999999999999999999 76663
Q ss_pred C-----eEEEEEEccC
Q 002709 504 G-----RQLTVLKALD 514 (890)
Q Consensus 504 G-----r~l~V~~a~~ 514 (890)
+ .+..|.+|.-
T Consensus 82 D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 82 DSKGNEYPAVVEFAPY 97 (176)
T ss_dssp -TTS-EEEEEEEE-SS
T ss_pred CCCCCCcceeEEEcch
Confidence 2 2455666553
No 191
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.08 E-value=0.83 Score=39.51 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=42.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 002709 584 RLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 662 (890)
Q Consensus 584 ~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~ 662 (890)
..+|. .|..+-..||.+||+ +||.|. |..+-| .-|||.....+.|..|+..+.-+
T Consensus 11 VFhlt-FPkeWK~~DI~qlFs---------pfG~I~-VsWi~d-------------TSAfV~l~~r~~~~~v~~~~~~~ 65 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFS---------PFGQIY-VSWIND-------------TSAFVALHNRDQAKVVMNTLKKN 65 (87)
T ss_dssp EEEEE---TT--HHHHHHHCC---------CCCCEE-EEEECT-------------TEEEEEECCCHHHHHHHHHHTT-
T ss_pred EEEEe-CchHhhhhhHHHHhc---------cCCcEE-EEEEcC-------------CcEEEEeecHHHHHHHHHHhccC
Confidence 34554 999999999999999 799985 666643 58999999999999999999864
No 192
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.25 E-value=0.16 Score=54.90 Aligned_cols=81 Identities=21% Similarity=0.391 Sum_probs=63.4
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHhhCCCeEEEEEeecCC--CC-CCCceEEEEECCHHHHHHHHHHhccCCCCCeeecC
Q 002709 431 NTIFICNLPFDLDNEEVK---QRFSAFGEVVSFVPVLHQV--TK-RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 504 (890)
Q Consensus 431 ~~l~V~NLp~~~tee~L~---~~F~~fG~I~~v~i~~~~~--~g-~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~G 504 (890)
.-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. .+ ....-++|.|...++|..||...+ |+.++|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~-----g~~~dg 152 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVD-----GFVDDG 152 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhh-----hHHhhh
Confidence 457888899887665554 5899999999987766542 11 122348999999999999999999 999999
Q ss_pred eEEEEEEccChh
Q 002709 505 RQLTVLKALDKK 516 (890)
Q Consensus 505 r~l~V~~a~~k~ 516 (890)
+.|...++..+-
T Consensus 153 ~~lka~~gttky 164 (327)
T KOG2068|consen 153 RALKASLGTTKY 164 (327)
T ss_pred hhhHHhhCCCcc
Confidence 999888877654
No 193
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.30 E-value=1.4 Score=46.93 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=56.6
Q ss_pred CcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCee-EEEEeec
Q 002709 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP-IAVDWAV 294 (890)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~-I~V~~a~ 294 (890)
...|.|-++|+... .-|..+|++||.|.+..... +..+-+|.|.+.-+|++||.+ ||..|+|.. |-|..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 56788888887644 56778999999998765542 456899999999999999996 999997764 5566554
Q ss_pred CC
Q 002709 295 PK 296 (890)
Q Consensus 295 pk 296 (890)
.+
T Consensus 269 Dk 270 (350)
T KOG4285|consen 269 DK 270 (350)
T ss_pred CH
Confidence 43
No 194
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.76 E-value=0.27 Score=53.20 Aligned_cols=81 Identities=11% Similarity=0.219 Sum_probs=62.3
Q ss_pred cEEEEccCCCCCCHHHHH---HhhccCCCeEEEEEcccCC--CC-CcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 002709 217 WKLIIRNIPFKAKVNEIK---DMFSPVGLVWNVYIPHNTD--TG-LSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (890)
Q Consensus 217 ~~l~V~nLp~~~te~~L~---~~F~~~G~I~~v~i~~~~~--~g-~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V 290 (890)
.-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. .+ ....-+||.|...++|..||...+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457777888776655554 5899999999998877652 11 12223899999999999999999999999999888
Q ss_pred EeecCCC
Q 002709 291 DWAVPKN 297 (890)
Q Consensus 291 ~~a~pk~ 297 (890)
.+..++-
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 8776543
No 195
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.64 E-value=2.2 Score=45.47 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=49.0
Q ss_pred cEEEEcCCCccchHHHHHHHhhcCCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 002709 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (890)
Q Consensus 122 rtv~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~ 201 (890)
.-|-|-++|+.... -|..+|..||.|+.... +.+..+-+|.|.+.-+|.+||.+ +|..|.|..
T Consensus 198 ~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~---------------~~ngNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVT---------------PSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccchh-HHHHHHHhhCeeeeeec---------------CCCCceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 45667788876654 46679999999998765 23445899999999999999985 888887653
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=84.72 E-value=1.1 Score=51.20 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=55.4
Q ss_pred CcEEEEcCCCccchHHHHHHHhhc--CCCeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHHHHHHHHHHhCC--ce
Q 002709 121 ARTVIIGGLLNADMAEEVHRLAGS--IGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ--KE 196 (890)
Q Consensus 121 ~rtv~V~nLp~~~te~~L~~~F~~--~G~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~--~~ 196 (890)
-|.|+|.-||..+-.++|..+|+. |-.+.+|.+..+. --||+|++..||+.|...|.. ..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----------------nWyITfesd~DAQqAykylreevk~ 238 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----------------NWYITFESDTDAQQAYKYLREEVKT 238 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----------------ceEEEeecchhHHHHHHHHHHHHHh
Confidence 355678889999999999999994 7789999984432 279999999999999988743 56
Q ss_pred ecCeEEEEe
Q 002709 197 IKGGTVWAR 205 (890)
Q Consensus 197 i~g~~i~v~ 205 (890)
|.|+.|.++
T Consensus 239 fqgKpImAR 247 (684)
T KOG2591|consen 239 FQGKPIMAR 247 (684)
T ss_pred hcCcchhhh
Confidence 777777654
No 197
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=84.56 E-value=22 Score=38.25 Aligned_cols=205 Identities=17% Similarity=0.201 Sum_probs=113.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCC-------CCCCCceEEEEECCHHHHHHHH----HHhccCCC
Q 002709 429 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-------TKRPKGTGFLKFKTVEAATAAV----SASKTTSG 497 (890)
Q Consensus 429 ~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~-------~g~~~g~aFV~F~~~e~A~~Ai----~~ln~~~~ 497 (890)
..+.|.+.|+..+++-..+...|-.||+|++|.++.+.. .........+.|-+.+.|.... +.|.+-
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf-- 91 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF-- 91 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH--
Confidence 467899999999999999999999999999999887651 1234567899999988765543 222211
Q ss_pred CCeeecCeEEEEEEccChhhhchhhhhhhccccccccchhhhccccccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCC
Q 002709 498 LGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPN 577 (890)
Q Consensus 498 ~g~~l~Gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~l~l~~eg~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~ 577 (890)
...+....|.|.+..-+-..+... +....|...++.. .+. . -+-++.
T Consensus 92 -K~~L~S~~L~lsFV~l~y~~~~~~-----~~~~~~~~~~~~~-----------------------~L~---~-~i~~~g 138 (309)
T PF10567_consen 92 -KTKLKSESLTLSFVSLNYQKKTDP-----NDEEADFSDYLVA-----------------------SLQ---Y-NIINRG 138 (309)
T ss_pred -HHhcCCcceeEEEEEEeccccccc-----cccccchhhHHhh-----------------------hhh---h-eeecCC
Confidence 245667777777754211000000 0000011001100 000 0 001111
Q ss_pred CCCccCeEEEeCCCCCCCHHHHH-HHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHH
Q 002709 578 FHVSRTRLVIYNLPKSMTEKGLK-KLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVAL 656 (890)
Q Consensus 578 ~~~s~~~L~V~NLP~~~teeeL~-~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al 656 (890)
....|.|. +-..+..++|. +.+. +......+. =+|.+|.|+--... ...-+..||.+.|-+...|...+
T Consensus 139 ---ATRSl~Ie-F~~~~~~~dl~~~kL~-fL~~~~n~R-YVlEsIDlVna~~~----~~~Fp~~YaILtFlnIsMAiEV~ 208 (309)
T PF10567_consen 139 ---ATRSLAIE-FKDPVDKDDLIEKKLP-FLKNSNNKR-YVLESIDLVNADEP----SKHFPKNYAILTFLNISMAIEVL 208 (309)
T ss_pred ---cceEEEEE-ecCccchhHHHHHhhh-hhccCCCce-EEEEEEEEeccCcc----cccCCcceEEEeehhHHhHHHHH
Confidence 11235555 33455444432 2222 211111111 25778888743221 23347789999999999999999
Q ss_pred HHhcCCCCCCCCCCccEEEEec
Q 002709 657 RVLNNNPKTFGPEHRPIVEFAV 678 (890)
Q Consensus 657 ~~Lng~~~~~g~~~rliV~~A~ 678 (890)
.-|..+....|-.+..+|..+.
T Consensus 209 dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 209 DYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred HHHHhcccccCcceEEEEeccC
Confidence 9998543444544555566663
No 198
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=84.41 E-value=0.57 Score=52.64 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=59.5
Q ss_pred cEEEEccCCCCC-CHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002709 217 WKLIIRNIPFKA-KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (890)
Q Consensus 217 ~~l~V~nLp~~~-te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a~p 295 (890)
+.|-+.-.|+.. |..+|..+|.+||.|..|.|-.. .-.|.|+|.+..+|-.|.. .++..|.++.|+|-|..|
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 344455555554 57899999999999999988553 3459999999999977777 599999999999999987
Q ss_pred CC
Q 002709 296 KN 297 (890)
Q Consensus 296 k~ 297 (890)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 54
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.34 E-value=1.8 Score=43.83 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=46.0
Q ss_pred CHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCeeEEEEeecCC
Q 002709 229 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN--GQKFGKRPIAVDWAVPK 296 (890)
Q Consensus 229 te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~ln--g~~l~g~~I~V~~a~pk 296 (890)
....|+.+|..|+.+..+...+ +-+-..|.|.+.++|..|...|+ +..+.|..++|-|+.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3578999999999988776665 33458999999999999999999 99999999999998543
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=82.47 E-value=9.9 Score=35.16 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=48.5
Q ss_pred cEEEEccCCCCCCHHHHHHhhccC-CCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 002709 217 WKLIIRNIPFKAKVNEIKDMFSPV-GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (890)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~ 284 (890)
..+.+-..|+.++-++|..+.+.+ ..|..++|+++. ..++-.+.+.|.+.++|......+||+.|.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344455555556666776666655 357788888864 236667999999999999999999999884
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=80.93 E-value=1 Score=50.65 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=58.6
Q ss_pred CCeEEEcCCCCCC-CHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002709 430 QNTIFICNLPFDL-DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 508 (890)
Q Consensus 430 ~~~l~V~NLp~~~-tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~ 508 (890)
.+.|-+.-.|+.. |-.+|..+|..||.|..|.+-.. --.|.|+|.+..+|-.|.. .+ +..|++|.|+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~-----~avlnnr~iK 439 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SH-----GAVLNNRFIK 439 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cc-----cceecCceeE
Confidence 4566666677766 57899999999999999976432 3469999999999977764 45 7999999999
Q ss_pred EEEccC
Q 002709 509 VLKALD 514 (890)
Q Consensus 509 V~~a~~ 514 (890)
|.|-.+
T Consensus 440 l~whnp 445 (526)
T KOG2135|consen 440 LFWHNP 445 (526)
T ss_pred EEEecC
Confidence 999765
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.04 E-value=5.6 Score=44.80 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=59.0
Q ss_pred ccCeEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 002709 581 SRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN 660 (890)
Q Consensus 581 s~~~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Ln 660 (890)
+.+.|+|-.+|..+|-.||..|+..+ ...|..++|+||.. +.+=.++|.|.+.++|..-...+|
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~--------~~~I~~irivRd~~--------pnrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASF--------IKQISDIRIVRDGM--------PNRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHH--------hhhhheeEEeecCC--------CceEEEEEEeccchhHHHHHHHcC
Confidence 36789999999999999999999853 56799999999743 457789999999999999999999
Q ss_pred CCCCCCC
Q 002709 661 NNPKTFG 667 (890)
Q Consensus 661 g~~~~~g 667 (890)
|. .|.
T Consensus 137 Gk--~Fn 141 (493)
T KOG0804|consen 137 GK--QFN 141 (493)
T ss_pred CC--cCC
Confidence 96 454
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=79.79 E-value=13 Score=34.37 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=46.2
Q ss_pred CeEEEeCCCCC-CCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 002709 583 TRLVIYNLPKS-MTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 661 (890)
Q Consensus 583 ~~L~V~NLP~~-~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng 661 (890)
+.|.|--.|.. ++-.+|..+... .-..|..++|++|.. +++-.+.+.|.+.+.|..-....||
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~--------~~~~i~~~riird~~--------pnrymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAP--------FREDIEHIRIIRDGT--------PNRYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhc--------ccccEEEEEEeeCCC--------CceEEEEEEECCHHHHHHHHHHhCC
Confidence 44555455554 455566544443 245688899998742 4678999999999999999999999
Q ss_pred C
Q 002709 662 N 662 (890)
Q Consensus 662 ~ 662 (890)
.
T Consensus 77 k 77 (110)
T PF07576_consen 77 K 77 (110)
T ss_pred C
Confidence 6
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=78.40 E-value=3.8 Score=36.17 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=43.9
Q ss_pred EEEEeCCHHHHHHHHHHh-CCceecCeEEEEec--CCCC-------CCCCCCcEEEEccCCCCCCHHHHHHhhc
Q 002709 175 SAVLYTTVKSACASVALL-HQKEIKGGTVWARQ--LGGE-------GSKTQKWKLIIRNIPFKAKVNEIKDMFS 238 (890)
Q Consensus 175 afV~F~s~e~A~~Ai~~l-n~~~i~g~~i~v~~--~~~~-------~~~~~~~~l~V~nLp~~~te~~L~~~F~ 238 (890)
|+|+|....-|+..+..- +...+.+..+.+.. .... ......++|.|.|||....+++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999988742 22344555554432 1111 1245667999999999999999997643
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=77.45 E-value=1.6 Score=52.46 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=66.2
Q ss_pred EEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee--CCeeEEEEeecC
Q 002709 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--GKRPIAVDWAVP 295 (890)
Q Consensus 218 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l--~g~~I~V~~a~p 295 (890)
..++.|.+-..+..-|..+|+.||.|.++...++- ..|.|.|.+.+.|..|+.+|+|..+ -|-+.+|.++.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34455566677888999999999999998887753 4699999999999999999999986 788999999988
Q ss_pred CCCcCCC
Q 002709 296 KNIYSSG 302 (890)
Q Consensus 296 k~~~~~~ 302 (890)
-..|...
T Consensus 374 ~~~~ep~ 380 (1007)
T KOG4574|consen 374 LPMYEPP 380 (1007)
T ss_pred cccccCC
Confidence 7777655
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=75.96 E-value=2.5 Score=49.79 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=61.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCe
Q 002709 426 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 505 (890)
Q Consensus 426 ~~~~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr 505 (890)
+.++..++||+|+...+..+-+..+...+|.|.++.... |||+.|..+..+.+|+..++ -..++|.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t-----~~~~~~~ 101 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLT-----ELNIDDQ 101 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhc-----ccCCCcc
Confidence 344567999999999999999999999999998875431 99999999999999999998 7788888
Q ss_pred EEEEEE
Q 002709 506 QLTVLK 511 (890)
Q Consensus 506 ~l~V~~ 511 (890)
.+.+..
T Consensus 102 kl~~~~ 107 (668)
T KOG2253|consen 102 KLIENV 107 (668)
T ss_pred hhhccc
Confidence 887765
No 207
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=70.62 E-value=11 Score=38.32 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=44.1
Q ss_pred CHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccC
Q 002709 443 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 514 (890)
Q Consensus 443 tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~l~V~~a~~ 514 (890)
....|+++|..|+.+..+.++. +-+-..|.|.+.+.|.+|...|+.. +..+.|..|.|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~---~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWD---GTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST-----TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhccc---ccccCCCceEEEEccc
Confidence 4578999999999988875553 3456899999999999999998721 5789999999999853
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.45 E-value=13 Score=42.01 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=57.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhCC-CeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecC
Q 002709 430 QNTIFICNLPFDLDNEEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 504 (890)
Q Consensus 430 ~~~l~V~NLp~~~tee~L~~~F~~fG-~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~G 504 (890)
++.|+|-.+|..+|-.||..|+..|- .|..++|+++.. ..+-.++|.|.+.++|....+.+| |..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efN-----Gk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFN-----GKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcC-----CCcCCC
Confidence 67899999999999999999998875 578899998642 245678999999999999999999 777753
No 209
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=67.81 E-value=6.9 Score=34.57 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=24.7
Q ss_pred EEEEecCHHHHHHHHHhhCCc-eeCCeeeEEeec
Q 002709 14 GYVQFAVMEDANRAVEMKNGT-SVGGRKIGVKHA 46 (890)
Q Consensus 14 AfV~F~~~edA~~Al~~lng~-~i~Gr~I~V~~a 46 (890)
|+|+|..++=|++-++.-... .+.+..+.|..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 789999999999999884333 455666666655
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=64.60 E-value=4.9 Score=47.41 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=60.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002709 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~ 292 (890)
.....+|||+|+...+..+-+..+...+|.|.++.... |||+.|..+.-+.+|+..++-..++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34557999999999999999999999999987665432 899999999999999999888888888777654
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=63.84 E-value=6 Score=47.86 Aligned_cols=73 Identities=23% Similarity=0.283 Sum_probs=59.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCC
Q 002709 584 RLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNP 663 (890)
Q Consensus 584 ~L~V~NLP~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~Al~~Lng~~ 663 (890)
..++.|.+-..+-.-|..+|.+ ||.|.+...+|+ -..|.|+|.+.+.|..|+.+|+|.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~---------yg~v~s~wtlr~------------~N~alvs~~s~~sai~a~dAl~gke 358 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSD---------YGSVASAWTLRD------------LNMALVSFSSVESAILALDALQGKE 358 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHh---------hcchhhheeccc------------ccchhhhhHHHHHHHHhhhhhcCCc
Confidence 4667777778889999999995 999999988876 5789999999999999999999974
Q ss_pred CCCCCCCccEEEEec
Q 002709 664 KTFGPEHRPIVEFAV 678 (890)
Q Consensus 664 ~~~g~~~rliV~~A~ 678 (890)
.+-.+-...|.||.
T Consensus 359 -vs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 359 -VSVTGAPSRVSFAK 372 (1007)
T ss_pred -ccccCCceeEEecc
Confidence 34333344488883
No 212
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.00 E-value=34 Score=40.07 Aligned_cols=92 Identities=20% Similarity=0.160 Sum_probs=63.2
Q ss_pred CccCeEEEeCCCCC-CCHHHHHHHHHHHHhhhhccCCC-CeEEEEEeec----------ccCCcc---------------
Q 002709 580 VSRTRLVIYNLPKS-MTEKGLKKLCIDAVVSRASKQKP-VIKQIKFLQS----------LKKGKV--------------- 632 (890)
Q Consensus 580 ~s~~~L~V~NLP~~-~teeeL~~lF~~~~~~~~~~~~G-~I~~v~i~rd----------~~~~~~--------------- 632 (890)
-...+|-|-||.+. +.-++|.-+|..++ |+| .|.+|.|... ...|++
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFl------P~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~s 245 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFL------PKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESES 245 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhc------CCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCccccc
Confidence 34578999999885 78999999999765 444 8999988732 112210
Q ss_pred ---------------CCCCCcc-eEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCccE-EEEecc
Q 002709 633 ---------------DTKHYSR-GVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPI-VEFAVD 679 (890)
Q Consensus 633 ---------------~~~~~sr-G~aFV~F~t~e~A~~Al~~Lng~~~~~g~~~rli-V~~A~e 679 (890)
+..++-+ =||.|+|.+++.|.+.+..+.|. -|+...-.+ +.|-++
T Consensus 246 D~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~--EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 246 DDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGI--EFESSANKLDLRFIPD 307 (650)
T ss_pred chhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcc--eeccccceeeeeecCC
Confidence 0000111 28999999999999999999995 455433333 777654
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=57.65 E-value=36 Score=28.86 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=35.4
Q ss_pred CCCCHHHHHHhhccCCC-----eEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002709 226 FKAKVNEIKDMFSPVGL-----VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (890)
Q Consensus 226 ~~~te~~L~~~F~~~G~-----I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V~~a 293 (890)
..++..+|..++...+. |-.|.|.. .|+||+-... .|..++..|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 36778888888877643 55666654 3788887755 788899999999999999999864
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=57.37 E-value=11 Score=31.98 Aligned_cols=34 Identities=32% Similarity=0.596 Sum_probs=20.2
Q ss_pred ceEEEEecCHHHHHHHHHhhCCceeCCeeeEEeec
Q 002709 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHA 46 (890)
Q Consensus 12 G~AfV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a 46 (890)
-|+||.-.. +.|..+|+.|++..+.|++|+|+.|
T Consensus 41 ~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 41 NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 477877654 4899999999999999999999875
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=52.97 E-value=18 Score=30.12 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=26.6
Q ss_pred EEEecCHHHHHHHHHhhCCceeCCeeeEE
Q 002709 15 YVQFAVMEDANRAVEMKNGTSVGGRKIGV 43 (890)
Q Consensus 15 fV~F~~~edA~~Al~~lng~~i~Gr~I~V 43 (890)
||.|.+.++|++++...+|..+.+..|.+
T Consensus 37 YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 37 YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 89999999999999999999998887754
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.78 E-value=56 Score=38.33 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=61.1
Q ss_pred CCCCcEEEEccCCCC-CCHHHHHHhhccC----CCeEEEEEcccC----------CCC----------------------
Q 002709 213 KTQKWKLIIRNIPFK-AKVNEIKDMFSPV----GLVWNVYIPHNT----------DTG---------------------- 255 (890)
Q Consensus 213 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~~~----------~~g---------------------- 255 (890)
.....+|-|-||.|. +.-.+|.-+|+.| |.|.+|.|.... ..|
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445678999999985 7889999988876 579999886421 011
Q ss_pred ---------------CcceEEEEEecCHHHHHHHHHHhCCceeCCe--eEEEEee
Q 002709 256 ---------------LSKGFAFVKFTCKRDAESAIQKFNGQKFGKR--PIAVDWA 293 (890)
Q Consensus 256 ---------------~~~g~afV~F~~~e~A~~Al~~lng~~l~g~--~I~V~~a 293 (890)
...-||.|+|.+.+.|......++|..|... .|-+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1235799999999999999999999999654 4444443
No 217
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=46.25 E-value=76 Score=26.50 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=43.0
Q ss_pred CCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 002709 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (890)
Q Consensus 227 ~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I~V 290 (890)
.++-++|+..+..|+-.. |..+ ..| =||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d-----~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDD-----RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEec-----CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 577899999999997533 3333 233 489999999999999999999887777654
No 218
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=43.58 E-value=33 Score=33.19 Aligned_cols=78 Identities=9% Similarity=-0.016 Sum_probs=53.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEecCCCCCC------CCCCcEEEEccCCCC-CCHHHHHHhhccCCCeE
Q 002709 172 MDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS------KTQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVW 244 (890)
Q Consensus 172 ~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v~~~~~~~~------~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~ 244 (890)
.++..+.|.+.+++..++.. ....+.|..+.+..-.+... .....-|.|.|||.. .+++-|..+-+.+|.+.
T Consensus 55 ~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i 133 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPI 133 (153)
T ss_pred CCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeE
Confidence 46899999999999998773 44455665555433221111 112334677899987 67788899999999998
Q ss_pred EEEEcc
Q 002709 245 NVYIPH 250 (890)
Q Consensus 245 ~v~i~~ 250 (890)
.+....
T Consensus 134 ~vD~~t 139 (153)
T PF14111_consen 134 EVDENT 139 (153)
T ss_pred EEEcCC
Confidence 776543
No 219
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=41.58 E-value=64 Score=29.71 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHhhcc---CCCeEEEEEcccCCCCCcceEEEEEecCH
Q 002709 225 PFKAKVNEIKDMFSP---VGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268 (890)
Q Consensus 225 p~~~te~~L~~~F~~---~G~I~~v~i~~~~~~g~~~g~afV~F~~~ 268 (890)
|+.+|..+|+++|+. |-.|.+-.+.+|..-.-+-..||..|...
T Consensus 83 PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 83 PYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 678899999999986 55555555555533223556788888754
No 220
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=35.22 E-value=36 Score=34.02 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=53.3
Q ss_pred cEEEEccCCCCCC-----HHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCe-eEEE
Q 002709 217 WKLIIRNIPFKAK-----VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR-PIAV 290 (890)
Q Consensus 217 ~~l~V~nLp~~~t-----e~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~-~I~V 290 (890)
..+++.+++..+- ......+|.+|....-..+.+ +.+..-|.|.+++.|..|...+++..|.|. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 3577777766543 233456777776655444444 556678999999999999999999999888 7777
Q ss_pred EeecCC
Q 002709 291 DWAVPK 296 (890)
Q Consensus 291 ~~a~pk 296 (890)
-++++.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 777654
No 221
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=32.47 E-value=26 Score=33.90 Aligned_cols=83 Identities=17% Similarity=0.087 Sum_probs=57.2
Q ss_pred ccceEEEEecCHHHHHHHHHhhCCceeCCeeeEEeecccchhHHhhhhhhchhhhhhhhhhcccCCCCccccccccchhh
Q 002709 10 HRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKL 89 (890)
Q Consensus 10 srG~AfV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~r~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (890)
..|+..+.|.+.+|+.+++.. ..-.+.|..|.+..-.+.....
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~------------------------------------ 96 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPS------------------------------------ 96 (153)
T ss_pred CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccccccc------------------------------------
Confidence 468889999999999999887 6666778777777663221000
Q ss_pred hhcccCCCCcccccccccccCccccccccCCCcEEEEcCCCcc-chHHHHHHHhhcCCCeEEEEe
Q 002709 90 LESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNA-DMAEEVHRLAGSIGTVCSVTY 153 (890)
Q Consensus 90 ~e~~~~~~~~k~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~-~te~~L~~~F~~~G~V~~v~i 153 (890)
. . .-....--|-|.|||.. ++++-+..+.+.+|.+..+..
T Consensus 97 -----------------~----~---~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~ 137 (153)
T PF14111_consen 97 -----------------E----V---KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDE 137 (153)
T ss_pred -----------------c----c---ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEc
Confidence 0 0 00011234567899997 667778889999999999876
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=31.41 E-value=68 Score=34.19 Aligned_cols=51 Identities=8% Similarity=0.060 Sum_probs=39.3
Q ss_pred cCCCcEEEEcCCCccchHHHHHHHhhcCC-CeEEEEeeCCchhhhhccccCCCCCccEEEEEeCCHH
Q 002709 118 QRVARTVIIGGLLNADMAEEVHRLAGSIG-TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVK 183 (890)
Q Consensus 118 ~~~~rtv~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e 183 (890)
.....-||++|||.++-..||...+.+.| ...++.. ....|-||++|.+..
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw---------------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW---------------KGHFGKCFLHFGNRK 378 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCceeEee---------------ecCCcceeEecCCcc
Confidence 34456699999999999999999999887 3455554 335678999997653
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=30.94 E-value=40 Score=33.73 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=54.3
Q ss_pred CeEEEcCCCCCCC-----HHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCe
Q 002709 431 NTIFICNLPFDLD-----NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 505 (890)
Q Consensus 431 ~~l~V~NLp~~~t-----ee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr 505 (890)
.++.+++++..+- .....++|..|.......+++ +.+..-|.|.+++.|..|.-.++ +..|.|.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~-----~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLH-----STSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhh-----hcccCCC
Confidence 5788888887762 233455666666555544432 35567789999999999999999 8888888
Q ss_pred -EEEEEEccCh
Q 002709 506 -QLTVLKALDK 515 (890)
Q Consensus 506 -~l~V~~a~~k 515 (890)
.+...++++.
T Consensus 80 ~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 80 NELKLYFAQPG 90 (193)
T ss_pred ceEEEEEccCC
Confidence 8888888764
No 224
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=28.88 E-value=2e+02 Score=26.71 Aligned_cols=51 Identities=10% Similarity=0.123 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHH
Q 002709 593 SMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALV 654 (890)
Q Consensus 593 ~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~ 654 (890)
.++.+||++-+.+. |-.-.++.+..+..+- ++.+.+.|||.| |++.+.|.+
T Consensus 34 ~vsK~EirEKla~m--------Ykt~~d~V~vfgfrt~--~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKM--------YKTTPDAVFVFGFRTH--FGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHH--------hcCCcceEEEEEeeec--cCCcccceeeee-eehHHHHHh
Confidence 67899999988874 4443444344333332 456788999987 677776543
No 225
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=24.26 E-value=14 Score=42.81 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=55.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 002709 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (890)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~l~g~~I 288 (890)
..++|||+|++++++-.+|..+|..+-.+..+.+...........+.+|.|.---.-..|+.+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 35789999999999999999999998777666654433223455678899997777777888888877654443
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=23.61 E-value=73 Score=29.78 Aligned_cols=56 Identities=20% Similarity=0.393 Sum_probs=30.4
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECC-HHHHHHHHH
Q 002709 432 TIFICNLPFD---------LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKT-VEAATAAVS 490 (890)
Q Consensus 432 ~l~V~NLp~~---------~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~-~e~A~~Ai~ 490 (890)
++.|-|+|.. ++.++|.+.|+.|..+. ++.+... ..++|+++|.|.. ..--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 6777788653 35689999999999875 4455554 2468999999974 444444443
No 227
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=23.49 E-value=12 Score=43.16 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=54.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEeecCCCCCCCceEEEEECCHHHHHHHHHHhccCCCCCeeecCeE
Q 002709 429 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 506 (890)
Q Consensus 429 ~~~~l~V~NLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~g~~~g~aFV~F~~~e~A~~Ai~~ln~~~~~g~~l~Gr~ 506 (890)
..++||++|++++++-.+|..+|+.+-.+..+.+...........+++|.|...-.-..|+.+|| +..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn-----~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN-----GIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh-----hccccccc
Confidence 35899999999999999999999998776666554333333455678999987777777777787 55554433
No 228
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=23.29 E-value=3.3e+02 Score=24.70 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHH
Q 002709 592 KSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALV 654 (890)
Q Consensus 592 ~~~teeeL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~ 654 (890)
...+..+|++-+.. .|+.=.+..++....+. ++.+.+.|||.| |++.+.|..
T Consensus 29 ~tpsr~eirekLa~--------~~~~~~~~vvv~~~~t~--fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAA--------MLNADKELVVVRKIKTE--YGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHH--------HHCcCCCEEEEEccCcc--CCCceEEEEEEE-ECCHHHHHh
Confidence 36788999988886 36654455566555554 567888899887 567766554
No 229
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=21.75 E-value=1e+02 Score=32.91 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=36.0
Q ss_pred cEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHH
Q 002709 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269 (890)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e 269 (890)
+-|+|+|||.++.-.+|+..+...|.+- ..|... | ..|-||++|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk---g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK---G-HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEeee---c-CCcceeEecCCcc
Confidence 5699999999999999999998877542 223221 2 5677999998753
No 230
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=21.42 E-value=1.1e+02 Score=33.06 Aligned_cols=83 Identities=8% Similarity=0.221 Sum_probs=61.0
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHhhccCCCeEEEEEcccC-------CCCCcceEEEEEecCHHHHHHHHH----HhCC
Q 002709 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT-------DTGLSKGFAFVKFTCKRDAESAIQ----KFNG 280 (890)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-------~~g~~~g~afV~F~~~e~A~~Al~----~lng 280 (890)
.....+.|.+.|+...++-..+...|-.||+|++|.++.+. ..........+.|-+.+.+..... .|+.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999998764 112345668899999887655433 2222
Q ss_pred --ceeCCeeEEEEeec
Q 002709 281 --QKFGKRPIAVDWAV 294 (890)
Q Consensus 281 --~~l~g~~I~V~~a~ 294 (890)
..+....+.|.|..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 23567778887764
No 231
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=21.22 E-value=1.1e+02 Score=32.41 Aligned_cols=34 Identities=24% Similarity=0.550 Sum_probs=27.8
Q ss_pred CeEEEcCCCCCC------------CHHHHHHHHhhCCCeEEEEEee
Q 002709 431 NTIFICNLPFDL------------DNEEVKQRFSAFGEVVSFVPVL 464 (890)
Q Consensus 431 ~~l~V~NLp~~~------------tee~L~~~F~~fG~I~~v~i~~ 464 (890)
.|||+.+||-.| +++-|+..|..||.|..|.|+.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 588888888543 6788999999999999987764
No 232
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=20.84 E-value=82 Score=29.43 Aligned_cols=49 Identities=27% Similarity=0.245 Sum_probs=27.6
Q ss_pred EEEEccCCCC---------CCHHHHHHhhccCCCeEEEEEcccCCCCCcceEEEEEecCHH
Q 002709 218 KLIIRNIPFK---------AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269 (890)
Q Consensus 218 ~l~V~nLp~~---------~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e 269 (890)
+++|-|+|.. ++.++|.+.|+.|.++. +..+.+.. -..|+++|.|...-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCCh
Confidence 6778887643 45688999999999876 55555442 37899999998644
No 233
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=20.37 E-value=3.6e+02 Score=25.86 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCC-CeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHH
Q 002709 593 SMTEKGLKKLCIDAVVSRASKQKP-VIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALV 654 (890)
Q Consensus 593 ~~teeeL~~lF~~~~~~~~~~~~G-~I~~v~i~rd~~~~~~~~~~~srG~aFV~F~t~e~A~~ 654 (890)
..+..+|++-+.. .|+ .=.++-++....+. ++.+.+.|||.| |++.+.|..
T Consensus 35 TpSr~eirekLA~--------~~~v~d~~~Vvv~~~~T~--fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAK--------QYKVADARTIVLFGFKTK--FGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHH--------HhCCCCCCEEEEEccEec--CCCceEEEEEEE-ECCHHHHHh
Confidence 6789999999887 377 33344444444444 567788899987 567665544
Done!