Query 002710
Match_columns 890
No_of_seqs 491 out of 2850
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:34:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978 E3 ubiquitin ligase in 100.0 1.9E-40 4.2E-45 355.1 75.9 679 168-890 7-698 (698)
2 TIGR00606 rad50 rad50. This fa 99.9 9.1E-18 2E-22 207.9 79.0 726 38-836 309-1091(1311)
3 KOG0161 Myosin class II heavy 99.8 2.5E-12 5.5E-17 155.6 87.9 67 47-113 1075-1141(1930)
4 KOG0161 Myosin class II heavy 99.8 7.6E-12 1.6E-16 151.6 91.1 121 692-812 1445-1565(1930)
5 COG1196 Smc Chromosome segrega 99.8 1.8E-10 4E-15 141.6 88.9 8 869-876 1085-1092(1163)
6 TIGR00606 rad50 rad50. This fa 99.7 8.6E-10 1.9E-14 137.6 86.5 118 524-641 748-865 (1311)
7 TIGR02168 SMC_prok_B chromosom 99.7 2.3E-09 5E-14 136.4 88.4 31 79-109 168-198 (1179)
8 KOG4674 Uncharacterized conser 99.7 8.5E-09 1.8E-13 123.3 87.4 128 427-556 997-1135(1822)
9 COG1196 Smc Chromosome segrega 99.7 1.7E-09 3.6E-14 133.3 80.9 43 770-812 860-902 (1163)
10 KOG4674 Uncharacterized conser 99.7 1.2E-08 2.6E-13 122.0 88.3 61 49-109 533-605 (1822)
11 PRK02224 chromosome segregatio 99.7 6E-09 1.3E-13 126.7 78.3 35 321-355 265-299 (880)
12 PF10174 Cast: RIM-binding pro 99.7 3.4E-09 7.3E-14 119.8 69.0 26 424-449 235-260 (775)
13 PRK02224 chromosome segregatio 99.7 2E-08 4.3E-13 122.2 81.9 12 874-885 815-826 (880)
14 PF10174 Cast: RIM-binding pro 99.7 1.5E-08 3.2E-13 114.7 74.8 30 55-84 3-32 (775)
15 KOG0996 Structural maintenance 99.6 6.1E-08 1.3E-12 109.4 75.9 38 67-104 265-302 (1293)
16 PF01576 Myosin_tail_1: Myosin 99.6 1.6E-16 3.4E-21 185.6 0.0 215 42-269 12-227 (859)
17 PRK03918 chromosome segregatio 99.6 4.4E-07 9.5E-12 110.9 77.6 15 871-885 813-827 (880)
18 KOG0320 Predicted E3 ubiquitin 99.5 2.1E-15 4.5E-20 131.5 2.1 55 835-890 131-187 (187)
19 PRK03918 chromosome segregatio 99.5 5E-07 1.1E-11 110.4 75.5 32 745-776 666-697 (880)
20 KOG0962 DNA repair protein RAD 99.5 3.9E-07 8.4E-12 105.9 80.3 299 565-865 792-1117(1294)
21 KOG0996 Structural maintenance 99.5 9.3E-07 2E-11 100.2 80.5 109 593-702 780-898 (1293)
22 KOG0933 Structural maintenance 99.4 1.2E-06 2.5E-11 97.7 70.4 151 615-765 790-940 (1174)
23 PLN03208 E3 ubiquitin-protein 99.4 1.2E-13 2.5E-18 125.5 3.5 57 833-889 16-87 (193)
24 PF01576 Myosin_tail_1: Myosin 99.4 5.7E-14 1.2E-18 164.3 0.3 74 719-792 745-818 (859)
25 PF15227 zf-C3HC4_4: zinc fing 99.3 4.8E-13 1E-17 90.7 3.0 39 838-876 1-42 (42)
26 smart00504 Ubox Modified RING 99.3 6.3E-13 1.4E-17 102.2 3.3 53 836-889 2-54 (63)
27 KOG0287 Postreplication repair 99.3 4.5E-13 9.7E-18 128.4 0.1 56 834-890 22-77 (442)
28 KOG0317 Predicted E3 ubiquitin 99.3 1.6E-12 3.5E-17 123.5 3.5 56 833-889 237-292 (293)
29 KOG0823 Predicted E3 ubiquitin 99.3 1.7E-12 3.6E-17 119.8 2.8 57 833-889 45-103 (230)
30 TIGR00599 rad18 DNA repair pro 99.3 2.3E-12 4.9E-17 133.2 3.3 61 828-889 19-79 (397)
31 PRK01156 chromosome segregatio 99.3 2.9E-05 6.3E-10 94.7 78.5 34 520-553 416-449 (895)
32 PF13923 zf-C3HC4_2: Zinc fing 99.2 3E-12 6.5E-17 86.3 2.1 38 838-876 1-39 (39)
33 KOG0933 Structural maintenance 99.2 1.4E-05 3.1E-10 89.4 68.8 41 317-357 297-337 (1174)
34 KOG2164 Predicted E3 ubiquitin 99.2 4.1E-12 8.9E-17 130.8 2.6 56 835-890 186-245 (513)
35 PF13920 zf-C3HC4_3: Zinc fing 99.2 8.3E-12 1.8E-16 89.8 2.6 45 836-881 3-48 (50)
36 PRK01156 chromosome segregatio 99.2 5.7E-05 1.2E-09 92.1 76.8 17 527-543 476-492 (895)
37 PF14835 zf-RING_6: zf-RING of 99.2 5.9E-12 1.3E-16 90.0 1.3 55 831-888 3-58 (65)
38 PF04564 U-box: U-box domain; 99.2 1E-11 2.2E-16 97.2 2.2 55 835-889 4-58 (73)
39 COG5432 RAD18 RING-finger-cont 99.2 7.1E-12 1.5E-16 117.5 1.5 56 831-887 21-76 (391)
40 KOG0250 DNA repair protein RAD 99.1 4.7E-05 1E-09 87.0 58.3 48 605-652 661-708 (1074)
41 KOG0978 E3 ubiquitin ligase in 99.1 3.4E-05 7.3E-10 85.3 69.1 123 621-743 463-585 (698)
42 PRK04863 mukB cell division pr 99.1 0.00011 2.3E-09 90.9 84.8 42 316-357 437-478 (1486)
43 PF13639 zf-RING_2: Ring finge 99.1 2E-11 4.4E-16 85.1 0.5 40 837-877 2-44 (44)
44 PF13445 zf-RING_UBOX: RING-ty 99.1 3.5E-11 7.6E-16 81.1 1.3 36 838-874 1-43 (43)
45 PHA02926 zinc finger-like prot 99.1 7.5E-11 1.6E-15 107.6 3.5 56 834-889 169-238 (242)
46 PF00097 zf-C3HC4: Zinc finger 99.1 7.1E-11 1.5E-15 81.2 2.4 39 838-876 1-41 (41)
47 PF14634 zf-RING_5: zinc-RING 99.1 8.4E-11 1.8E-15 81.5 2.5 41 837-878 1-44 (44)
48 PHA02929 N1R/p28-like protein; 99.0 1.2E-10 2.6E-15 111.8 3.4 48 834-882 173-228 (238)
49 PF12128 DUF3584: Protein of u 99.0 0.00036 7.8E-09 86.9 78.6 32 323-354 354-385 (1201)
50 KOG0976 Rho/Rac1-interacting s 99.0 0.00016 3.4E-09 78.7 63.8 26 854-879 632-657 (1265)
51 PF05701 WEMBL: Weak chloropla 99.0 0.00021 4.6E-09 80.0 55.3 37 776-812 389-425 (522)
52 PRK04778 septation ring format 98.9 0.00029 6.2E-09 80.3 55.0 62 594-655 278-339 (569)
53 cd00162 RING RING-finger (Real 98.9 6.7E-10 1.4E-14 79.0 2.8 44 837-880 1-45 (45)
54 COG5574 PEX10 RING-finger-cont 98.9 4.5E-10 9.8E-15 105.6 2.3 51 835-885 215-266 (271)
55 KOG0250 DNA repair protein RAD 98.9 0.00044 9.6E-09 79.3 65.4 34 846-880 985-1020(1074)
56 PF00261 Tropomyosin: Tropomyo 98.9 8.4E-06 1.8E-10 81.1 31.5 204 602-805 26-229 (237)
57 smart00184 RING Ring finger. E 98.9 1.1E-09 2.5E-14 75.0 2.4 39 838-876 1-39 (39)
58 PF07888 CALCOCO1: Calcium bin 98.8 0.00044 9.6E-09 74.6 44.2 16 432-447 141-156 (546)
59 PF12128 DUF3584: Protein of u 98.8 0.0017 3.6E-08 81.1 77.8 18 531-548 515-532 (1201)
60 PF00261 Tropomyosin: Tropomyo 98.8 1.9E-05 4.1E-10 78.6 30.2 152 667-818 70-221 (237)
61 KOG4172 Predicted E3 ubiquitin 98.8 6.1E-10 1.3E-14 75.3 -1.1 52 836-889 8-60 (62)
62 PF07888 CALCOCO1: Calcium bin 98.8 0.00056 1.2E-08 73.9 45.8 16 797-812 441-456 (546)
63 KOG4643 Uncharacterized coiled 98.8 0.0009 1.9E-08 75.4 55.8 73 212-284 174-246 (1195)
64 KOG0964 Structural maintenance 98.8 0.00094 2E-08 75.0 77.0 31 375-405 397-427 (1200)
65 PRK04863 mukB cell division pr 98.8 0.0023 5E-08 79.5 87.6 60 755-814 1063-1122(1486)
66 KOG4643 Uncharacterized coiled 98.8 0.00098 2.1E-08 75.1 52.6 32 426-457 263-294 (1195)
67 KOG0964 Structural maintenance 98.7 0.0012 2.7E-08 74.1 74.2 17 492-508 481-497 (1200)
68 PRK04778 septation ring format 98.7 0.0014 3E-08 74.7 53.1 28 369-396 106-133 (569)
69 KOG0977 Nuclear envelope prote 98.7 0.00041 8.8E-09 74.9 38.0 35 520-554 99-133 (546)
70 PF05701 WEMBL: Weak chloropla 98.7 0.0018 3.9E-08 72.6 63.0 18 427-444 172-189 (522)
71 COG1579 Zn-ribbon protein, pos 98.6 3.1E-05 6.6E-10 74.5 25.2 12 869-880 220-231 (239)
72 KOG0311 Predicted E3 ubiquitin 98.6 4.6E-09 1E-13 102.8 -1.6 56 828-883 36-92 (381)
73 PF00038 Filament: Intermediat 98.6 0.00087 1.9E-08 70.7 38.0 41 768-808 264-304 (312)
74 KOG0018 Structural maintenance 98.6 0.0036 7.8E-08 71.6 64.3 69 640-708 683-751 (1141)
75 KOG0994 Extracellular matrix g 98.5 0.0042 9.1E-08 70.9 58.1 12 216-227 1202-1213(1758)
76 COG5152 Uncharacterized conser 98.5 2.8E-08 6.1E-13 88.1 1.4 47 835-882 196-242 (259)
77 KOG0824 Predicted E3 ubiquitin 98.5 3.6E-08 7.8E-13 94.5 2.1 48 836-883 8-55 (324)
78 PF00038 Filament: Intermediat 98.5 0.0027 5.9E-08 67.0 39.1 14 823-836 293-306 (312)
79 KOG0977 Nuclear envelope prote 98.5 0.0011 2.5E-08 71.6 34.6 38 475-512 39-76 (546)
80 PF06160 EzrA: Septation ring 98.5 0.0058 1.3E-07 69.4 58.2 155 593-747 273-430 (560)
81 PF12678 zf-rbx1: RING-H2 zinc 98.5 7.8E-08 1.7E-12 75.0 2.5 40 837-877 21-73 (73)
82 PF05483 SCP-1: Synaptonemal c 98.4 0.0046 1E-07 67.1 81.7 17 316-332 192-208 (786)
83 KOG0994 Extracellular matrix g 98.4 0.0072 1.6E-07 69.1 59.4 71 186-263 1203-1273(1758)
84 COG5243 HRD1 HRD ubiquitin lig 98.4 1.3E-07 2.7E-12 92.8 3.3 47 834-881 286-345 (491)
85 KOG0976 Rho/Rac1-interacting s 98.4 0.0072 1.6E-07 66.4 58.8 24 462-485 181-204 (1265)
86 PF14447 Prok-RING_4: Prokaryo 98.4 1.6E-07 3.5E-12 65.2 1.9 49 834-885 6-54 (55)
87 KOG1813 Predicted E3 ubiquitin 98.4 1.2E-07 2.6E-12 90.8 1.3 46 836-882 242-287 (313)
88 TIGR00570 cdk7 CDK-activating 98.4 2.9E-07 6.2E-12 91.3 3.8 38 852-889 25-62 (309)
89 KOG2879 Predicted E3 ubiquitin 98.4 2.4E-07 5.1E-12 87.7 3.0 47 835-881 239-287 (298)
90 PF04641 Rtf2: Rtf2 RING-finge 98.3 2.4E-07 5.1E-12 93.4 3.2 56 832-889 110-169 (260)
91 PF05557 MAD: Mitotic checkpoi 98.3 2.6E-06 5.7E-11 100.0 12.2 24 795-818 607-630 (722)
92 PF05557 MAD: Mitotic checkpoi 98.3 2.3E-06 4.9E-11 100.5 11.0 22 47-68 60-81 (722)
93 KOG1785 Tyrosine kinase negati 98.3 2.5E-07 5.5E-12 91.5 1.6 48 837-884 371-419 (563)
94 PF09730 BicD: Microtubule-ass 98.3 0.016 3.4E-07 65.7 43.5 38 371-408 30-67 (717)
95 COG5540 RING-finger-containing 98.3 3.8E-07 8.2E-12 87.1 2.4 48 835-882 323-373 (374)
96 KOG2177 Predicted E3 ubiquitin 98.3 3.5E-07 7.5E-12 100.1 2.2 47 831-878 9-55 (386)
97 PF06160 EzrA: Septation ring 98.2 0.021 4.6E-07 64.9 52.2 44 774-817 445-488 (560)
98 KOG4159 Predicted E3 ubiquitin 98.2 6E-07 1.3E-11 93.5 2.5 49 833-882 82-130 (398)
99 PF11789 zf-Nse: Zinc-finger o 98.2 7.4E-07 1.6E-11 64.9 2.0 45 833-877 9-55 (57)
100 KOG4265 Predicted E3 ubiquitin 98.2 5.6E-07 1.2E-11 89.6 1.5 48 834-882 289-337 (349)
101 KOG0018 Structural maintenance 98.2 0.029 6.3E-07 64.6 65.6 15 799-813 934-948 (1141)
102 PF12861 zf-Apc11: Anaphase-pr 98.2 1E-06 2.3E-11 68.4 2.3 47 836-882 22-83 (85)
103 KOG0802 E3 ubiquitin ligase [P 98.2 6.4E-07 1.4E-11 100.8 1.5 49 835-884 291-344 (543)
104 COG1579 Zn-ribbon protein, pos 98.1 0.0023 5E-08 61.9 25.1 27 836-863 198-229 (239)
105 KOG4673 Transcription factor T 98.1 0.021 4.6E-07 61.9 59.6 18 567-584 579-596 (961)
106 KOG4275 Predicted E3 ubiquitin 98.1 3.6E-07 7.9E-12 86.8 -2.0 47 836-889 301-348 (350)
107 KOG0971 Microtubule-associated 98.1 0.038 8.2E-07 62.0 48.8 84 499-582 304-389 (1243)
108 KOG3039 Uncharacterized conser 98.1 2.3E-06 5E-11 79.2 2.7 54 834-888 220-277 (303)
109 KOG4628 Predicted E3 ubiquitin 98.0 1.9E-06 4.1E-11 87.1 2.3 47 836-882 230-279 (348)
110 PF09726 Macoilin: Transmembra 98.0 0.0086 1.9E-07 68.7 31.5 72 747-818 589-660 (697)
111 KOG2660 Locus-specific chromos 98.0 1.2E-06 2.6E-11 85.9 0.5 55 829-884 9-64 (331)
112 PRK11637 AmiB activator; Provi 98.0 0.018 3.8E-07 63.6 32.9 6 835-840 306-311 (428)
113 PHA02562 46 endonuclease subun 98.0 0.0094 2E-07 69.0 32.0 11 870-880 496-506 (562)
114 PRK11637 AmiB activator; Provi 98.0 0.018 3.9E-07 63.6 31.8 72 600-671 49-120 (428)
115 PF15070 GOLGA2L5: Putative go 98.0 0.06 1.3E-06 60.9 40.9 74 656-729 155-228 (617)
116 COG5222 Uncharacterized conser 98.0 3.3E-06 7.1E-11 80.4 1.9 43 836-878 275-318 (427)
117 KOG4673 Transcription factor T 97.9 0.057 1.2E-06 58.7 64.8 30 173-202 412-441 (961)
118 PHA02562 46 endonuclease subun 97.9 0.014 3.1E-07 67.5 31.3 16 567-582 180-195 (562)
119 PF09726 Macoilin: Transmembra 97.9 0.031 6.6E-07 64.3 32.7 29 527-555 425-453 (697)
120 KOG0825 PHD Zn-finger protein 97.9 2.2E-06 4.8E-11 92.4 -0.3 49 837-886 125-176 (1134)
121 PF05622 HOOK: HOOK protein; 97.9 9.5E-06 2.1E-10 95.1 4.4 26 161-186 128-153 (713)
122 KOG1003 Actin filament-coating 97.8 0.024 5.2E-07 51.8 27.6 114 690-803 82-195 (205)
123 KOG0946 ER-Golgi vesicle-tethe 97.8 0.032 7E-07 62.0 29.1 37 781-817 905-941 (970)
124 PF05667 DUF812: Protein of un 97.8 0.083 1.8E-06 59.5 33.4 24 492-515 328-351 (594)
125 KOG0995 Centromere-associated 97.8 0.087 1.9E-06 56.8 46.6 97 490-589 264-360 (581)
126 COG4372 Uncharacterized protei 97.8 0.059 1.3E-06 54.5 33.2 61 656-716 132-192 (499)
127 COG1340 Uncharacterized archae 97.8 0.054 1.2E-06 53.8 34.5 26 599-624 63-88 (294)
128 KOG1002 Nucleotide excision re 97.8 9.6E-06 2.1E-10 83.7 1.5 52 833-884 534-589 (791)
129 KOG0946 ER-Golgi vesicle-tethe 97.7 0.067 1.4E-06 59.7 30.1 44 511-554 669-712 (970)
130 KOG0297 TNF receptor-associate 97.7 1.4E-05 3E-10 85.4 2.4 54 832-886 18-72 (391)
131 PF14662 CCDC155: Coiled-coil 97.7 0.037 7.9E-07 50.9 28.0 10 674-683 66-75 (193)
132 COG1340 Uncharacterized archae 97.7 0.071 1.5E-06 53.0 35.4 31 602-632 45-75 (294)
133 COG5220 TFB3 Cdk activating ki 97.6 8.2E-06 1.8E-10 75.2 -0.8 49 836-884 11-67 (314)
134 KOG4593 Mitotic checkpoint pro 97.6 0.17 3.6E-06 56.0 70.9 24 795-818 601-624 (716)
135 KOG0612 Rho-associated, coiled 97.6 0.26 5.7E-06 58.0 48.5 7 835-841 915-921 (1317)
136 KOG1571 Predicted E3 ubiquitin 97.6 1.4E-05 3E-10 79.9 -0.1 49 834-889 304-353 (355)
137 COG4372 Uncharacterized protei 97.6 0.12 2.6E-06 52.4 32.0 12 571-582 77-88 (499)
138 KOG1039 Predicted E3 ubiquitin 97.5 4.4E-05 9.6E-10 78.1 2.0 48 835-882 161-222 (344)
139 KOG1493 Anaphase-promoting com 97.5 2.5E-05 5.3E-10 57.8 -0.1 35 848-882 45-82 (84)
140 PF14570 zf-RING_4: RING/Ubox 97.5 9.9E-05 2.2E-09 50.6 2.8 44 838-881 1-48 (48)
141 PF14915 CCDC144C: CCDC144C pr 97.5 0.14 2.9E-06 50.6 39.5 48 676-723 208-255 (305)
142 PF05622 HOOK: HOOK protein; 97.5 2.7E-05 5.9E-10 91.3 0.0 14 869-882 692-705 (713)
143 PF05483 SCP-1: Synaptonemal c 97.4 0.29 6.3E-06 53.8 87.5 53 639-691 593-645 (786)
144 KOG1029 Endocytic adaptor prot 97.4 0.32 7E-06 54.0 35.4 56 640-695 465-520 (1118)
145 KOG4692 Predicted E3 ubiquitin 97.4 6.3E-05 1.4E-09 73.8 1.9 46 835-881 422-467 (489)
146 PF05667 DUF812: Protein of un 97.4 0.37 8E-06 54.5 34.3 41 673-713 489-529 (594)
147 PF12718 Tropomyosin_1: Tropom 97.4 0.052 1.1E-06 48.9 20.2 24 791-814 112-135 (143)
148 KOG0828 Predicted E3 ubiquitin 97.4 6.1E-05 1.3E-09 77.4 1.7 49 834-882 570-635 (636)
149 KOG0826 Predicted E3 ubiquitin 97.3 6.2E-05 1.4E-09 73.6 -0.1 54 835-889 300-354 (357)
150 KOG2817 Predicted E3 ubiquitin 97.3 0.00015 3.3E-09 73.6 2.6 60 831-890 330-394 (394)
151 KOG0804 Cytoplasmic Zn-finger 97.2 0.00011 2.4E-09 75.1 1.5 47 833-882 173-223 (493)
152 PF04849 HAP1_N: HAP1 N-termin 97.2 0.28 6.1E-06 49.4 28.3 29 806-834 274-304 (306)
153 KOG0980 Actin-binding protein 97.2 0.6 1.3E-05 53.1 33.0 15 820-834 596-610 (980)
154 PF09728 Taxilin: Myosin-like 97.2 0.37 8E-06 49.9 37.4 68 739-806 238-305 (309)
155 KOG1814 Predicted E3 ubiquitin 97.2 0.00032 6.9E-09 71.2 3.6 45 835-879 184-238 (445)
156 COG5194 APC11 Component of SCF 97.1 0.00024 5.3E-09 53.2 1.7 32 852-884 53-84 (88)
157 PF15070 GOLGA2L5: Putative go 97.1 0.84 1.8E-05 52.0 50.7 25 527-551 286-310 (617)
158 KOG1001 Helicase-like transcri 97.0 0.00023 4.9E-09 80.8 1.3 48 836-884 455-503 (674)
159 PRK09039 hypothetical protein; 97.0 0.26 5.7E-06 52.0 23.9 7 852-858 267-273 (343)
160 KOG3113 Uncharacterized conser 97.0 0.00038 8.2E-09 65.3 2.5 53 833-888 109-165 (293)
161 KOG0995 Centromere-associated 97.0 0.8 1.7E-05 49.8 44.0 19 566-584 306-324 (581)
162 KOG3800 Predicted E3 ubiquitin 96.8 0.00052 1.1E-08 66.4 1.8 35 852-886 22-56 (300)
163 PF09789 DUF2353: Uncharacteri 96.7 0.53 1.1E-05 48.1 22.2 31 654-684 72-102 (319)
164 PF10146 zf-C4H2: Zinc finger- 96.7 0.2 4.4E-06 48.9 18.4 28 857-885 196-223 (230)
165 KOG0962 DNA repair protein RAD 96.6 2.7 5.8E-05 51.0 81.0 35 522-556 633-667 (1294)
166 COG5175 MOT2 Transcriptional r 96.6 0.0009 1.9E-08 65.5 1.8 53 836-888 15-71 (480)
167 KOG2034 Vacuolar sorting prote 96.6 0.0034 7.3E-08 70.7 6.1 44 824-867 806-851 (911)
168 PF05290 Baculo_IE-1: Baculovi 96.6 0.007 1.5E-07 51.2 6.5 51 834-884 79-135 (140)
169 KOG3002 Zn finger protein [Gen 96.6 0.0013 2.7E-08 66.7 2.3 45 832-881 45-91 (299)
170 PF14915 CCDC144C: CCDC144C pr 96.6 0.95 2.1E-05 44.9 39.0 59 693-751 141-199 (305)
171 KOG1029 Endocytic adaptor prot 96.5 2 4.4E-05 48.1 37.6 77 603-679 442-518 (1118)
172 COG5236 Uncharacterized conser 96.4 0.0013 2.9E-08 64.5 1.5 46 835-880 61-107 (493)
173 KOG0971 Microtubule-associated 96.4 2.5 5.5E-05 48.3 70.5 21 869-889 1219-1239(1243)
174 KOG4185 Predicted E3 ubiquitin 96.4 0.0014 3E-08 68.5 1.6 36 845-880 19-54 (296)
175 COG0419 SbcC ATPase involved i 96.4 3.9 8.4E-05 50.2 80.6 8 850-857 815-822 (908)
176 KOG3161 Predicted E3 ubiquitin 96.4 0.00088 1.9E-08 71.5 0.1 38 834-874 10-51 (861)
177 PF10272 Tmpp129: Putative tra 96.4 0.0019 4E-08 66.7 2.4 37 852-888 310-358 (358)
178 KOG1100 Predicted E3 ubiquitin 96.3 0.0016 3.5E-08 62.3 1.4 41 837-882 160-201 (207)
179 PF11793 FANCL_C: FANCL C-term 96.3 0.001 2.2E-08 51.4 -0.0 48 835-882 2-67 (70)
180 COG5219 Uncharacterized conser 96.2 0.0017 3.6E-08 72.5 1.3 48 834-881 1468-1523(1525)
181 PF08647 BRE1: BRE1 E3 ubiquit 96.2 0.22 4.7E-06 41.4 13.2 85 646-730 2-86 (96)
182 KOG4362 Transcriptional regula 96.2 0.0016 3.5E-08 72.0 0.8 53 828-880 14-68 (684)
183 KOG3579 Predicted E3 ubiquitin 96.2 0.002 4.4E-08 61.6 1.3 34 835-868 268-305 (352)
184 KOG1734 Predicted RING-contain 96.2 0.0012 2.7E-08 62.6 -0.2 49 836-884 225-284 (328)
185 smart00744 RINGv The RING-vari 96.2 0.0035 7.6E-08 44.3 2.1 41 837-877 1-49 (49)
186 PF13514 AAA_27: AAA domain 96.1 6 0.00013 49.8 78.0 60 516-575 455-516 (1111)
187 KOG2114 Vacuolar assembly/sort 96.1 0.01 2.2E-07 66.3 6.5 75 789-880 807-882 (933)
188 COG4477 EzrA Negative regulato 96.1 2.6 5.7E-05 45.5 52.9 71 670-740 356-426 (570)
189 PF10473 CENP-F_leu_zip: Leuci 96.1 0.95 2.1E-05 40.2 21.1 7 695-701 79-85 (140)
190 PF05911 DUF869: Plant protein 96.0 4.3 9.4E-05 47.4 62.8 44 315-358 266-309 (769)
191 PF04849 HAP1_N: HAP1 N-termin 96.0 2.1 4.5E-05 43.4 29.4 58 636-693 209-266 (306)
192 PF10367 Vps39_2: Vacuolar sor 96.0 0.014 3.1E-07 50.4 5.7 30 834-863 77-108 (109)
193 KOG0963 Transcription factor/C 96.0 3.5 7.5E-05 45.5 45.3 149 592-740 183-340 (629)
194 KOG0980 Actin-binding protein 95.9 4.4 9.4E-05 46.6 38.2 10 7-16 17-26 (980)
195 KOG1941 Acetylcholine receptor 95.9 0.0043 9.4E-08 62.3 2.2 46 836-881 366-416 (518)
196 COG5185 HEC1 Protein involved 95.9 2.9 6.4E-05 44.0 34.7 88 184-271 271-358 (622)
197 KOG0963 Transcription factor/C 95.9 3.8 8.2E-05 45.2 41.2 23 609-631 186-208 (629)
198 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.8 1.3 2.7E-05 39.6 18.5 59 757-818 64-122 (132)
199 PF02891 zf-MIZ: MIZ/SP-RING z 95.8 0.0045 9.8E-08 43.9 1.3 44 836-879 3-50 (50)
200 KOG0993 Rab5 GTPase effector R 95.7 2.9 6.3E-05 43.1 36.2 76 786-868 426-507 (542)
201 PF03854 zf-P11: P-11 zinc fin 95.7 0.0055 1.2E-07 41.1 1.3 43 836-881 3-46 (50)
202 KOG0827 Predicted E3 ubiquitin 95.7 0.0053 1.2E-07 61.8 1.7 36 851-886 24-61 (465)
203 KOG1645 RING-finger-containing 95.6 0.003 6.5E-08 64.1 -0.0 42 848-889 22-64 (463)
204 PF10481 CENP-F_N: Cenp-F N-te 95.6 0.87 1.9E-05 44.2 15.9 54 763-816 78-131 (307)
205 COG3883 Uncharacterized protei 95.5 2.9 6.4E-05 41.4 28.2 65 600-664 33-97 (265)
206 KOG3970 Predicted E3 ubiquitin 95.5 0.0078 1.7E-07 55.5 2.0 47 836-882 51-106 (299)
207 PHA03096 p28-like protein; Pro 95.4 0.0063 1.4E-07 61.2 1.3 44 836-879 179-232 (284)
208 KOG3899 Uncharacterized conser 95.3 0.0057 1.2E-07 58.8 0.7 37 852-888 324-372 (381)
209 PF09730 BicD: Microtubule-ass 95.2 8.1 0.00018 44.6 67.0 96 166-271 30-125 (717)
210 PRK10929 putative mechanosensi 95.2 11 0.00025 46.2 45.8 44 662-705 266-309 (1109)
211 COG5109 Uncharacterized conser 95.1 0.012 2.6E-07 57.5 2.1 60 831-890 332-396 (396)
212 PRK11281 hypothetical protein; 95.1 12 0.00027 46.0 44.3 43 663-705 287-329 (1113)
213 COG3883 Uncharacterized protei 95.0 4.3 9.2E-05 40.3 30.7 30 629-658 69-98 (265)
214 KOG4185 Predicted E3 ubiquitin 95.0 0.098 2.1E-06 54.6 8.7 44 836-879 208-265 (296)
215 COG3813 Uncharacterized protei 95.0 0.016 3.4E-07 42.6 1.9 49 836-887 6-58 (84)
216 TIGR03185 DNA_S_dndD DNA sulfu 94.9 11 0.00023 44.5 38.9 9 876-884 580-588 (650)
217 PF08317 Spc7: Spc7 kinetochor 94.9 6.2 0.00014 41.6 28.6 15 820-834 276-290 (325)
218 KOG3039 Uncharacterized conser 94.8 0.018 3.9E-07 54.2 2.3 36 831-866 39-74 (303)
219 KOG2932 E3 ubiquitin ligase in 94.8 0.011 2.5E-07 57.5 1.0 42 836-880 91-133 (389)
220 KOG4593 Mitotic checkpoint pro 94.7 9.4 0.0002 42.9 63.7 26 593-618 386-411 (716)
221 KOG2930 SCF ubiquitin ligase, 94.6 0.017 3.6E-07 46.2 1.4 29 852-881 80-108 (114)
222 PF13514 AAA_27: AAA domain 94.6 18 0.00038 45.8 89.0 6 852-857 1016-1021(1111)
223 KOG0979 Structural maintenance 94.6 12 0.00027 43.9 61.1 36 373-408 316-351 (1072)
224 KOG4445 Uncharacterized conser 94.6 0.023 5.1E-07 55.2 2.5 49 835-883 115-188 (368)
225 KOG0298 DEAD box-containing he 94.5 0.092 2E-06 62.0 7.4 50 831-881 1149-1199(1394)
226 KOG0827 Predicted E3 ubiquitin 94.4 0.22 4.8E-06 50.6 8.9 46 837-883 198-247 (465)
227 KOG0979 Structural maintenance 94.3 14 0.00031 43.5 54.9 56 784-839 867-925 (1072)
228 KOG0825 PHD Zn-finger protein 94.3 0.017 3.8E-07 63.5 1.1 47 836-882 97-155 (1134)
229 COG4647 AcxC Acetone carboxyla 94.1 0.017 3.7E-07 48.1 0.5 22 840-861 62-83 (165)
230 PF14569 zf-UDP: Zinc-binding 94.0 0.044 9.5E-07 41.6 2.5 47 836-882 10-63 (80)
231 PF07111 HCR: Alpha helical co 94.0 13 0.00029 41.9 71.1 17 800-816 638-654 (739)
232 KOG1815 Predicted E3 ubiquitin 94.0 0.033 7.2E-07 61.4 2.6 54 833-886 68-131 (444)
233 PF05911 DUF869: Plant protein 93.7 18 0.0004 42.4 62.8 14 189-202 22-35 (769)
234 KOG4360 Uncharacterized coiled 93.6 8.1 0.00018 41.5 18.7 97 631-727 203-299 (596)
235 TIGR03007 pepcterm_ChnLen poly 93.3 17 0.00037 41.3 23.1 30 527-556 161-190 (498)
236 PRK11281 hypothetical protein; 93.2 28 0.0006 43.1 43.3 17 568-584 163-179 (1113)
237 PF10481 CENP-F_N: Cenp-F N-te 93.1 9.4 0.0002 37.4 19.7 13 795-807 177-189 (307)
238 KOG1812 Predicted E3 ubiquitin 93.1 0.044 9.5E-07 58.6 1.6 50 835-884 146-206 (384)
239 PF10235 Cript: Microtubule-as 93.1 0.05 1.1E-06 43.4 1.5 36 836-881 45-80 (90)
240 KOG4360 Uncharacterized coiled 93.1 15 0.00032 39.6 26.8 67 41-107 55-121 (596)
241 PF06906 DUF1272: Protein of u 93.0 0.09 2E-06 37.1 2.5 47 836-885 6-56 (57)
242 TIGR01843 type_I_hlyD type I s 92.9 18 0.00039 40.1 25.4 16 612-627 81-96 (423)
243 PF13851 GAS: Growth-arrest sp 92.9 9.5 0.00021 36.8 24.3 36 667-702 92-127 (201)
244 TIGR01843 type_I_hlyD type I s 92.9 18 0.0004 40.0 24.7 18 770-787 250-267 (423)
245 TIGR01005 eps_transp_fam exopo 92.7 16 0.00035 44.0 22.9 29 605-633 194-222 (754)
246 PF08317 Spc7: Spc7 kinetochor 92.6 16 0.00034 38.6 32.3 18 801-818 276-293 (325)
247 PF05883 Baculo_RING: Baculovi 92.4 0.059 1.3E-06 46.5 1.1 33 835-867 26-67 (134)
248 cd00065 FYVE FYVE domain; Zinc 92.3 0.048 1E-06 40.4 0.5 32 836-867 3-38 (57)
249 PRK10929 putative mechanosensi 92.3 36 0.00078 42.1 44.8 39 680-718 270-308 (1109)
250 PF04111 APG6: Autophagy prote 92.1 4.1 8.8E-05 42.5 14.5 41 777-817 96-136 (314)
251 PF12777 MT: Microtubule-bindi 92.0 12 0.00026 39.9 18.3 212 640-854 1-325 (344)
252 PF12325 TMF_TATA_bd: TATA ele 92.0 7.7 0.00017 33.6 14.9 32 599-630 24-55 (120)
253 TIGR01562 FdhE formate dehydro 91.8 0.05 1.1E-06 55.4 0.0 44 835-879 184-233 (305)
254 PF07800 DUF1644: Protein of u 91.7 0.12 2.7E-06 45.7 2.3 20 835-854 2-21 (162)
255 PF07191 zinc-ribbons_6: zinc- 91.7 0.022 4.7E-07 42.8 -1.9 40 836-881 2-41 (70)
256 PF10168 Nup88: Nuclear pore c 91.6 34 0.00074 40.3 22.6 10 602-611 562-571 (717)
257 TIGR00634 recN DNA repair prot 91.5 32 0.00069 39.7 26.2 12 571-582 164-175 (563)
258 TIGR03007 pepcterm_ChnLen poly 91.4 30 0.00065 39.3 25.5 26 599-624 162-187 (498)
259 KOG1428 Inhibitor of type V ad 91.2 0.11 2.5E-06 61.0 2.1 47 836-882 3487-3545(3738)
260 KOG1899 LAR transmembrane tyro 91.2 28 0.00061 38.5 22.1 13 872-884 389-401 (861)
261 PF01363 FYVE: FYVE zinc finge 91.1 0.015 3.2E-07 45.2 -3.6 33 835-867 9-45 (69)
262 PTZ00303 phosphatidylinositol 91.1 0.1 2.2E-06 57.7 1.5 32 836-867 461-501 (1374)
263 PF14319 Zn_Tnp_IS91: Transpos 90.7 0.085 1.8E-06 45.1 0.4 46 828-880 23-70 (111)
264 PF04111 APG6: Autophagy prote 90.5 6.5 0.00014 41.1 14.0 13 873-885 268-280 (314)
265 PF07111 HCR: Alpha helical co 90.4 36 0.00078 38.6 75.3 24 371-394 302-325 (739)
266 PRK04023 DNA polymerase II lar 90.2 0.16 3.4E-06 58.8 2.0 48 835-885 626-678 (1121)
267 PF02318 FYVE_2: FYVE-type zin 90.0 0.28 6E-06 42.7 3.0 44 835-878 54-102 (118)
268 TIGR03185 DNA_S_dndD DNA sulfu 89.8 48 0.001 39.1 41.5 26 529-554 264-289 (650)
269 PF08882 Acetone_carb_G: Aceto 89.8 0.078 1.7E-06 43.7 -0.5 13 848-860 24-36 (112)
270 COG2433 Uncharacterized conser 89.6 23 0.0005 39.3 17.3 35 773-807 474-508 (652)
271 PF10571 UPF0547: Uncharacteri 89.6 0.18 3.9E-06 30.0 1.0 12 870-881 14-25 (26)
272 PF13870 DUF4201: Domain of un 89.4 19 0.00042 34.0 23.4 21 660-680 48-68 (177)
273 PF04710 Pellino: Pellino; In 89.3 0.11 2.4E-06 53.4 0.0 49 835-883 328-403 (416)
274 KOG1952 Transcription factor N 89.3 0.29 6.2E-06 55.3 3.2 46 835-880 191-246 (950)
275 KOG2113 Predicted RNA binding 89.2 0.2 4.3E-06 49.2 1.6 49 830-881 338-387 (394)
276 PF10498 IFT57: Intra-flagella 89.1 18 0.00038 38.5 16.0 47 732-778 267-313 (359)
277 PF10146 zf-C4H2: Zinc finger- 89.1 25 0.00053 34.7 16.2 8 873-880 197-204 (230)
278 KOG0309 Conserved WD40 repeat- 88.8 0.26 5.7E-06 54.5 2.3 42 836-878 1029-1073(1081)
279 PRK03564 formate dehydrogenase 88.7 0.15 3.2E-06 52.0 0.4 43 835-878 187-234 (309)
280 PF00769 ERM: Ezrin/radixin/mo 88.7 28 0.00061 34.9 18.2 20 605-624 12-31 (246)
281 PF04216 FdhE: Protein involve 88.6 0.083 1.8E-06 54.7 -1.5 44 836-880 173-221 (290)
282 KOG2068 MOT2 transcription fac 88.6 0.36 7.9E-06 48.7 3.0 48 836-884 250-301 (327)
283 smart00064 FYVE Protein presen 88.5 0.14 3E-06 39.6 -0.0 32 836-867 11-46 (68)
284 PF08746 zf-RING-like: RING-li 88.3 0.48 1E-05 32.4 2.6 39 838-876 1-43 (43)
285 KOG1729 FYVE finger containing 88.3 0.1 2.3E-06 52.5 -0.9 46 836-881 169-225 (288)
286 KOG0804 Cytoplasmic Zn-finger 88.0 40 0.00087 35.9 17.8 51 673-723 352-402 (493)
287 PF06818 Fez1: Fez1; InterPro 87.9 25 0.00054 33.4 24.0 72 605-676 31-102 (202)
288 PF13870 DUF4201: Domain of un 87.8 25 0.00054 33.3 24.2 78 645-722 54-131 (177)
289 KOG2979 Protein involved in DN 87.7 12 0.00026 36.6 12.3 46 834-879 175-222 (262)
290 KOG1940 Zn-finger protein [Gen 87.5 0.21 4.6E-06 49.6 0.7 42 836-878 159-204 (276)
291 PF13240 zinc_ribbon_2: zinc-r 87.4 0.14 3E-06 29.5 -0.4 22 858-880 2-23 (23)
292 KOG3842 Adaptor protein Pellin 87.3 0.43 9.3E-06 47.0 2.5 37 848-884 373-417 (429)
293 COG3364 Zn-ribbon containing p 87.2 0.29 6.3E-06 39.3 1.1 26 849-879 4-29 (112)
294 COG4026 Uncharacterized protei 87.2 10 0.00022 35.8 11.1 66 751-816 141-206 (290)
295 PF04582 Reo_sigmaC: Reovirus 87.0 1.4 3E-05 45.0 6.1 118 699-816 38-155 (326)
296 PF09755 DUF2046: Uncharacteri 87.0 39 0.00084 34.5 35.8 56 529-584 180-245 (310)
297 smart00787 Spc7 Spc7 kinetocho 87.0 42 0.00091 35.0 30.5 14 820-833 271-284 (312)
298 PF15290 Syntaphilin: Golgi-lo 86.9 21 0.00045 35.3 13.4 8 193-200 133-140 (305)
299 PF05384 DegS: Sensor protein 86.6 26 0.00056 32.2 21.7 51 679-729 88-138 (159)
300 PF00769 ERM: Ezrin/radixin/mo 86.6 37 0.00081 34.0 18.0 17 798-814 186-202 (246)
301 PF09755 DUF2046: Uncharacteri 86.6 40 0.00088 34.4 33.8 48 687-734 154-202 (310)
302 KOG1850 Myosin-like coiled-coi 86.4 39 0.00085 34.1 39.7 30 740-769 245-274 (391)
303 PHA02862 5L protein; Provision 86.1 0.62 1.3E-05 40.5 2.6 46 836-882 3-54 (156)
304 PF15290 Syntaphilin: Golgi-lo 86.0 38 0.00083 33.6 15.1 70 592-663 69-140 (305)
305 PF06785 UPF0242: Uncharacteri 85.9 43 0.00093 34.1 20.1 56 657-712 102-157 (401)
306 PF13248 zf-ribbon_3: zinc-rib 85.8 0.23 4.9E-06 29.7 -0.1 23 857-880 4-26 (26)
307 PLN02189 cellulose synthase 85.7 0.45 9.9E-06 56.0 2.1 46 836-881 35-87 (1040)
308 KOG4718 Non-SMC (structural ma 85.6 0.49 1.1E-05 43.9 1.9 48 835-883 181-229 (235)
309 TIGR00634 recN DNA repair prot 85.5 77 0.0017 36.6 27.1 28 602-629 172-199 (563)
310 KOG3268 Predicted E3 ubiquitin 85.4 0.59 1.3E-05 41.8 2.2 31 852-882 189-229 (234)
311 KOG2462 C2H2-type Zn-finger pr 85.0 0.24 5.2E-06 48.4 -0.4 12 836-847 162-173 (279)
312 cd00350 rubredoxin_like Rubred 84.8 0.64 1.4E-05 29.7 1.6 12 869-880 16-27 (33)
313 PF07975 C1_4: TFIIH C1-like d 84.7 0.76 1.6E-05 32.5 2.1 39 838-877 2-50 (51)
314 KOG0249 LAR-interacting protei 84.5 79 0.0017 36.0 22.2 8 849-856 354-361 (916)
315 PRK11032 hypothetical protein; 84.5 31 0.00067 31.7 12.7 29 846-879 123-151 (160)
316 PF10571 UPF0547: Uncharacteri 84.5 0.31 6.6E-06 29.0 0.0 21 837-857 2-24 (26)
317 PLN02436 cellulose synthase A 84.5 0.55 1.2E-05 55.4 2.1 46 836-881 37-89 (1094)
318 PF05605 zf-Di19: Drought indu 84.3 0.4 8.7E-06 34.9 0.6 41 835-882 2-43 (54)
319 PF04710 Pellino: Pellino; In 84.3 0.33 7.1E-06 50.0 0.2 44 836-879 278-337 (416)
320 COG5185 HEC1 Protein involved 84.3 63 0.0014 34.6 42.1 51 485-535 302-352 (622)
321 KOG3842 Adaptor protein Pellin 84.0 0.51 1.1E-05 46.4 1.4 43 836-878 291-349 (429)
322 PF10267 Tmemb_cc2: Predicted 83.7 10 0.00023 40.4 10.9 19 858-876 361-379 (395)
323 PRK14714 DNA polymerase II lar 83.7 0.53 1.2E-05 56.3 1.6 49 836-884 668-723 (1337)
324 KOG0249 LAR-interacting protei 83.5 88 0.0019 35.6 20.6 113 606-718 71-185 (916)
325 COG0068 HypF Hydrogenase matur 83.5 0.6 1.3E-05 52.2 1.8 23 858-880 154-183 (750)
326 COG1592 Rubrerythrin [Energy p 83.1 2.6 5.6E-05 38.7 5.3 12 869-880 148-159 (166)
327 PF09986 DUF2225: Uncharacteri 82.8 0.53 1.1E-05 46.0 0.9 54 833-887 3-65 (214)
328 PLN02195 cellulose synthase A 82.6 0.87 1.9E-05 53.4 2.7 47 836-882 7-60 (977)
329 PRK13169 DNA replication intia 82.5 4.9 0.00011 34.0 6.4 10 840-849 85-94 (110)
330 smart00787 Spc7 Spc7 kinetocho 82.2 68 0.0015 33.4 31.7 18 801-818 271-288 (312)
331 KOG2113 Predicted RNA binding 82.1 0.37 7.9E-06 47.5 -0.5 50 832-881 133-183 (394)
332 PHA02825 LAP/PHD finger-like p 81.9 1.3 2.9E-05 39.5 2.9 48 835-883 8-61 (162)
333 PF12329 TMF_DNA_bd: TATA elem 81.8 23 0.0005 27.7 10.6 18 673-690 10-27 (74)
334 PLN02638 cellulose synthase A 81.8 0.83 1.8E-05 54.2 2.1 46 836-881 18-70 (1079)
335 COG2433 Uncharacterized conser 81.7 42 0.0009 37.5 14.5 26 750-775 479-504 (652)
336 PF14353 CpXC: CpXC protein 81.7 1 2.2E-05 40.0 2.3 48 836-883 2-51 (128)
337 PF09787 Golgin_A5: Golgin sub 81.7 1E+02 0.0022 35.1 36.9 14 571-584 158-171 (511)
338 PF12795 MscS_porin: Mechanose 81.2 63 0.0014 32.4 28.0 13 769-781 195-207 (240)
339 PF13851 GAS: Growth-arrest sp 81.2 55 0.0012 31.7 25.9 52 649-700 29-80 (201)
340 PRK10884 SH3 domain-containing 81.2 38 0.00082 32.8 12.8 8 604-611 99-106 (206)
341 KOG4739 Uncharacterized protei 80.8 0.59 1.3E-05 45.0 0.5 19 849-867 19-37 (233)
342 PRK10246 exonuclease subunit S 80.7 1.6E+02 0.0036 36.9 81.3 15 871-885 976-990 (1047)
343 PF11559 ADIP: Afadin- and alp 80.6 46 0.001 30.5 18.9 15 795-809 134-148 (151)
344 KOG1842 FYVE finger-containing 80.6 1.9 4.2E-05 45.1 4.0 46 820-865 162-214 (505)
345 KOG0972 Huntingtin interacting 80.5 65 0.0014 32.1 14.0 69 764-832 278-347 (384)
346 PF09538 FYDLN_acid: Protein o 80.3 0.95 2.1E-05 38.2 1.5 14 834-847 8-21 (108)
347 PF03833 PolC_DP2: DNA polymer 79.9 0.56 1.2E-05 53.6 0.0 47 835-884 655-706 (900)
348 PF04423 Rad50_zn_hook: Rad50 79.8 0.67 1.5E-05 33.7 0.4 12 872-883 22-33 (54)
349 KOG1899 LAR transmembrane tyro 79.7 1.1E+02 0.0024 34.2 20.7 32 671-702 170-201 (861)
350 PLN02915 cellulose synthase A 79.7 1.1 2.3E-05 53.2 2.1 46 836-881 16-68 (1044)
351 PF09738 DUF2051: Double stran 79.6 59 0.0013 33.6 14.2 25 788-812 220-244 (302)
352 KOG1812 Predicted E3 ubiquitin 79.6 0.78 1.7E-05 49.2 0.9 42 833-875 304-350 (384)
353 KOG1850 Myosin-like coiled-coi 79.2 76 0.0017 32.1 40.4 6 848-853 341-346 (391)
354 PRK12495 hypothetical protein; 79.0 2.8 6.1E-05 39.7 4.2 11 836-846 43-53 (226)
355 PF07503 zf-HYPF: HypF finger; 79.0 2.1 4.5E-05 27.7 2.4 26 857-882 1-33 (35)
356 PF12906 RINGv: RING-variant d 78.7 1.2 2.6E-05 31.2 1.4 39 838-876 1-47 (47)
357 KOG2462 C2H2-type Zn-finger pr 78.6 1.2 2.7E-05 43.7 1.8 16 836-851 188-203 (279)
358 PLN02400 cellulose synthase 78.6 1 2.2E-05 53.5 1.6 46 836-881 37-89 (1085)
359 PF15616 TerY-C: TerY-C metal 78.5 0.77 1.7E-05 40.0 0.4 44 832-882 74-117 (131)
360 PF10186 Atg14: UV radiation r 78.4 90 0.0019 32.5 20.4 11 836-846 174-184 (302)
361 KOG1815 Predicted E3 ubiquitin 78.4 1.1 2.3E-05 49.7 1.5 38 847-884 178-240 (444)
362 PF07106 TBPIP: Tat binding pr 78.3 12 0.00027 35.0 8.5 21 795-815 117-137 (169)
363 PF05384 DegS: Sensor protein 78.3 56 0.0012 30.1 23.0 7 722-728 110-116 (159)
364 TIGR01000 bacteriocin_acc bact 78.2 1.2E+02 0.0026 33.9 24.8 23 780-802 291-313 (457)
365 KOG4218 Nuclear hormone recept 77.8 1 2.2E-05 45.1 1.0 23 837-862 17-39 (475)
366 PF12773 DZR: Double zinc ribb 77.7 2.1 4.4E-05 30.5 2.4 41 838-884 1-43 (50)
367 PF09723 Zn-ribbon_8: Zinc rib 77.5 0.52 1.1E-05 32.1 -0.7 28 849-878 7-34 (42)
368 KOG0288 WD40 repeat protein Ti 77.1 1E+02 0.0023 32.6 17.1 54 614-667 15-68 (459)
369 TIGR02300 FYDLN_acid conserved 77.0 1.3 2.9E-05 37.8 1.4 28 833-860 7-39 (129)
370 KOG1853 LIS1-interacting prote 76.4 78 0.0017 30.8 22.5 12 798-809 168-179 (333)
371 PF13824 zf-Mss51: Zinc-finger 76.2 1.8 4E-05 31.0 1.7 13 870-882 14-26 (55)
372 PF14446 Prok-RING_1: Prokaryo 75.9 2.6 5.7E-05 30.1 2.4 42 836-882 6-53 (54)
373 COG3024 Uncharacterized protei 75.8 1.7 3.8E-05 31.8 1.5 15 870-884 7-21 (65)
374 PF10212 TTKRSYEDQ: Predicted 75.7 1.4E+02 0.0029 33.2 21.7 228 32-263 280-514 (518)
375 KOG2991 Splicing regulator [RN 75.2 85 0.0018 30.6 25.0 16 607-622 138-153 (330)
376 KOG1356 Putative transcription 75.2 0.88 1.9E-05 51.7 -0.2 46 836-881 230-282 (889)
377 PF06156 DUF972: Protein of un 74.8 13 0.00029 31.5 6.7 10 840-849 88-97 (107)
378 TIGR00373 conserved hypothetic 74.7 3.5 7.6E-05 38.0 3.6 34 835-884 109-142 (158)
379 PF07295 DUF1451: Protein of u 74.5 63 0.0014 29.3 11.3 29 846-879 111-139 (146)
380 PRK06266 transcription initiat 74.0 3.3 7.2E-05 39.0 3.4 34 835-884 117-150 (178)
381 KOG3362 Predicted BBOX Zn-fing 73.5 1.3 2.8E-05 38.3 0.5 32 836-868 119-151 (156)
382 KOG3799 Rab3 effector RIM1 and 73.3 8.2 0.00018 33.0 5.0 19 834-856 64-83 (169)
383 smart00290 ZnF_UBP Ubiquitin C 73.2 1.7 3.8E-05 30.9 1.0 24 837-860 1-24 (50)
384 PF13719 zinc_ribbon_5: zinc-r 73.1 1.5 3.2E-05 28.9 0.5 13 836-848 3-15 (37)
385 COG1675 TFA1 Transcription ini 72.9 4.3 9.3E-05 37.7 3.7 35 835-885 113-147 (176)
386 PF13094 CENP-Q: CENP-Q, a CEN 72.8 80 0.0017 29.2 15.5 76 37-112 9-84 (160)
387 PRK05978 hypothetical protein; 72.7 2.4 5.2E-05 38.1 2.0 32 836-883 34-65 (148)
388 PF12795 MscS_porin: Mechanose 72.5 1.1E+02 0.0024 30.7 26.2 20 795-814 193-212 (240)
389 PRK01343 zinc-binding protein; 72.5 2.6 5.6E-05 30.5 1.7 14 869-882 8-21 (57)
390 cd00729 rubredoxin_SM Rubredox 72.4 2 4.3E-05 27.6 1.0 10 870-879 18-27 (34)
391 PRK10869 recombination and rep 72.3 1.9E+02 0.0041 33.3 28.4 11 572-582 161-171 (553)
392 PF10013 DUF2256: Uncharacteri 72.2 2 4.4E-05 28.6 1.0 13 869-881 7-19 (42)
393 PRK11827 hypothetical protein; 72.0 1.8 3.9E-05 31.9 0.8 42 832-890 5-46 (60)
394 PRK00420 hypothetical protein; 71.8 1.4 3E-05 37.3 0.3 11 836-846 24-34 (112)
395 PF13717 zinc_ribbon_4: zinc-r 71.8 1.7 3.7E-05 28.4 0.6 12 836-847 3-14 (36)
396 COG3058 FdhE Uncharacterized p 71.5 1.7 3.8E-05 42.5 0.9 46 833-879 183-234 (308)
397 TIGR03017 EpsF chain length de 71.5 1.7E+02 0.0038 32.5 24.2 18 798-815 346-363 (444)
398 COG4260 Membrane protease subu 71.4 2 4.4E-05 42.1 1.3 45 828-881 299-345 (345)
399 PHA02768 hypothetical protein; 71.1 1.5 3.2E-05 31.6 0.2 39 836-883 6-44 (55)
400 KOG3726 Uncharacterized conser 70.0 2.5 5.5E-05 47.1 1.8 39 837-879 656-698 (717)
401 COG1655 Uncharacterized protei 70.0 0.75 1.6E-05 43.4 -1.8 13 835-847 19-31 (267)
402 PRK14559 putative protein seri 68.9 3 6.6E-05 47.9 2.2 25 857-882 29-53 (645)
403 PF10164 DUF2367: Uncharacteri 68.8 1.4 3E-05 35.5 -0.3 37 837-880 51-98 (98)
404 KOG2789 Putative Zn-finger pro 68.7 2.5 5.4E-05 43.4 1.3 32 834-865 73-106 (482)
405 TIGR00622 ssl1 transcription f 68.5 3.3 7.2E-05 34.9 1.8 41 836-877 56-110 (112)
406 TIGR02338 gimC_beta prefoldin, 68.4 76 0.0016 27.2 13.3 33 525-557 15-47 (110)
407 KOG2807 RNA polymerase II tran 67.5 1.7 3.7E-05 43.4 -0.1 45 836-880 291-355 (378)
408 PLN03086 PRLI-interacting fact 67.5 4.5 9.8E-05 45.2 3.1 50 832-881 450-515 (567)
409 KOG0396 Uncharacterized conser 67.1 2.8 6E-05 43.0 1.3 43 848-890 346-388 (389)
410 COG1867 TRM1 N2,N2-dimethylgua 67.1 2 4.4E-05 44.5 0.3 37 852-890 236-275 (380)
411 COG3677 Transposase and inacti 66.7 4.1 8.8E-05 36.0 2.1 42 831-885 26-68 (129)
412 cd01407 SIR2-fam SIR2 family o 66.6 5.4 0.00012 39.3 3.3 43 841-883 103-146 (218)
413 KOG1818 Membrane trafficking a 66.5 1.8 3.8E-05 48.4 -0.2 42 836-877 166-218 (634)
414 TIGR03017 EpsF chain length de 65.7 2.2E+02 0.0049 31.6 26.7 16 603-618 176-191 (444)
415 KOG1819 FYVE finger-containing 65.6 1.8 4E-05 45.4 -0.3 31 837-867 903-937 (990)
416 PF14205 Cys_rich_KTR: Cystein 65.3 2.3 5.1E-05 30.1 0.3 12 834-845 3-14 (55)
417 PF14369 zf-RING_3: zinc-finge 65.2 1.6 3.5E-05 28.2 -0.5 27 856-882 3-33 (35)
418 PF10234 Cluap1: Clusterin-ass 65.1 1.6E+02 0.0035 29.7 17.1 137 696-832 120-258 (267)
419 PF09538 FYDLN_acid: Protein o 65.0 3 6.5E-05 35.3 0.9 27 857-883 11-39 (108)
420 TIGR03830 CxxCG_CxxCG_HTH puta 65.0 1.9 4.1E-05 38.3 -0.3 40 838-884 1-45 (127)
421 COG1885 Uncharacterized protei 64.7 3.4 7.4E-05 33.5 1.1 14 869-882 48-61 (115)
422 KOG2991 Splicing regulator [RN 64.5 1.5E+02 0.0032 29.1 24.2 66 752-817 236-301 (330)
423 KOG0824 Predicted E3 ubiquitin 64.3 2 4.3E-05 42.7 -0.3 47 835-882 105-152 (324)
424 KOG1937 Uncharacterized conser 64.3 2.1E+02 0.0046 30.8 35.5 22 683-704 397-418 (521)
425 COG1645 Uncharacterized Zn-fin 64.3 2.1 4.6E-05 37.1 -0.1 22 836-861 29-50 (131)
426 PF13913 zf-C2HC_2: zinc-finge 63.8 2.7 5.8E-05 24.8 0.3 13 871-883 3-15 (25)
427 PRK14890 putative Zn-ribbon RN 63.4 5.7 0.00012 28.9 1.9 39 836-877 8-55 (59)
428 COG4338 Uncharacterized protei 63.3 2.2 4.8E-05 28.9 -0.1 12 870-881 12-23 (54)
429 KOG4302 Microtubule-associated 63.3 2.9E+02 0.0063 32.0 26.0 32 592-623 55-86 (660)
430 smart00531 TFIIE Transcription 63.2 4 8.7E-05 37.2 1.5 16 869-884 122-137 (147)
431 TIGR01000 bacteriocin_acc bact 62.6 2.6E+02 0.0057 31.3 26.4 24 598-621 97-120 (457)
432 PF09297 zf-NADH-PPase: NADH p 62.4 2.3 4.9E-05 26.9 -0.2 25 855-879 3-30 (32)
433 COG4306 Uncharacterized protei 62.1 4 8.7E-05 34.3 1.1 25 856-884 29-53 (160)
434 KOG4642 Chaperone-dependent E3 62.1 12 0.00026 36.4 4.3 55 835-889 211-265 (284)
435 COG1198 PriA Primosomal protei 62.0 3 6.5E-05 48.4 0.5 24 854-879 461-484 (730)
436 KOG2169 Zn-finger transcriptio 61.4 5.4 0.00012 46.2 2.4 55 831-885 302-360 (636)
437 COG0423 GRS1 Glycyl-tRNA synth 61.0 6 0.00013 43.1 2.5 52 835-890 88-147 (558)
438 PF04912 Dynamitin: Dynamitin 61.0 2.5E+02 0.0054 30.6 25.9 251 490-744 92-388 (388)
439 KOG0269 WD40 repeat-containing 60.8 6.6 0.00014 44.4 2.8 52 838-890 782-837 (839)
440 PF09889 DUF2116: Uncharacteri 60.4 5.1 0.00011 29.5 1.3 15 869-883 2-16 (59)
441 KOG0883 Cyclophilin type, U bo 60.4 5.7 0.00012 40.9 2.0 52 838-890 43-94 (518)
442 PRK03947 prefoldin subunit alp 60.2 1.3E+02 0.0028 27.1 14.1 94 674-767 5-137 (140)
443 TIGR02680 conserved hypothetic 60.0 5.1E+02 0.011 33.8 75.1 606 128-799 195-989 (1353)
444 PF10083 DUF2321: Uncharacteri 60.0 4.8 0.0001 35.9 1.3 32 855-890 28-59 (158)
445 PF10497 zf-4CXXC_R1: Zinc-fin 60.0 8.3 0.00018 32.6 2.7 39 839-877 22-68 (105)
446 COG2835 Uncharacterized conser 59.8 4.1 8.9E-05 29.7 0.7 43 831-890 4-46 (60)
447 PF14311 DUF4379: Domain of un 59.8 5.5 0.00012 29.0 1.4 21 853-876 34-55 (55)
448 TIGR02098 MJ0042_CXXC MJ0042 f 59.4 4.5 9.7E-05 26.8 0.8 31 836-880 3-35 (38)
449 PF04012 PspA_IM30: PspA/IM30 59.3 1.9E+02 0.004 28.5 23.2 169 644-815 13-186 (221)
450 PF10764 Gin: Inhibitor of sig 59.1 5.7 0.00012 27.6 1.3 31 837-868 1-31 (46)
451 KOG1962 B-cell receptor-associ 58.9 1.8E+02 0.0039 28.2 12.2 97 675-783 114-210 (216)
452 PF12777 MT: Microtubule-bindi 58.8 2.5E+02 0.0055 29.9 25.4 241 427-694 1-310 (344)
453 PF08581 Tup_N: Tup N-terminal 58.7 91 0.002 24.8 12.2 73 707-782 1-73 (79)
454 PHA00733 hypothetical protein 58.6 8.2 0.00018 34.1 2.5 47 836-882 41-111 (128)
455 PF13465 zf-H2C2_2: Zinc-finge 58.6 3.2 7E-05 24.7 0.0 13 869-881 13-25 (26)
456 KOG0230 Phosphatidylinositol-4 58.6 3.2 6.9E-05 50.7 -0.0 51 838-889 8-59 (1598)
457 PRK00418 DNA gyrase inhibitor; 58.2 6.8 0.00015 29.0 1.6 19 870-888 6-27 (62)
458 cd01410 SIRT7 SIRT7: Eukaryoti 58.1 10 0.00022 36.9 3.4 43 841-883 89-133 (206)
459 KOG1814 Predicted E3 ubiquitin 58.0 9 0.0002 40.1 3.0 60 825-884 263-382 (445)
460 smart00154 ZnF_AN1 AN1-like Zi 57.9 5.7 0.00012 26.5 1.1 23 838-860 1-25 (39)
461 KOG0288 WD40 repeat protein Ti 57.5 2.7E+02 0.0058 29.8 16.9 125 664-788 2-126 (459)
462 PF02148 zf-UBP: Zn-finger in 57.2 3.9 8.4E-05 30.9 0.2 21 838-858 1-22 (63)
463 PF04728 LPP: Lipoprotein leuc 57.1 74 0.0016 23.2 8.2 55 604-658 2-56 (56)
464 KOG4809 Rab6 GTPase-interactin 57.0 3.1E+02 0.0068 30.4 35.7 317 506-828 236-557 (654)
465 PRK00481 NAD-dependent deacety 56.9 9.5 0.00021 38.3 3.0 40 841-883 116-155 (242)
466 cd00632 Prefoldin_beta Prefold 56.8 1.2E+02 0.0026 25.6 12.6 89 642-730 1-104 (105)
467 smart00249 PHD PHD zinc finger 56.8 3.4 7.4E-05 28.6 -0.1 40 837-876 1-47 (47)
468 cd01408 SIRT1 SIRT1: Eukaryoti 56.4 11 0.00025 37.5 3.5 43 841-883 110-153 (235)
469 PRK00398 rpoP DNA-directed RNA 55.9 4.8 0.0001 28.0 0.5 29 835-880 3-31 (46)
470 PF07889 DUF1664: Protein of u 55.9 1.4E+02 0.0031 26.2 13.3 85 706-800 39-123 (126)
471 KOG2066 Vacuolar assembly/sort 55.9 3.6 7.8E-05 46.7 -0.2 38 837-876 786-830 (846)
472 PF15358 TSKS: Testis-specific 55.8 2.8E+02 0.006 29.4 24.6 280 595-876 108-457 (558)
473 KOG4080 Mitochondrial ribosoma 55.7 6.8 0.00015 35.1 1.5 32 829-867 87-118 (176)
474 PF02146 SIR2: Sir2 family; I 55.4 5.7 0.00012 37.7 1.1 43 841-883 99-142 (178)
475 smart00734 ZnF_Rad18 Rad18-lik 55.3 3.5 7.6E-05 24.6 -0.2 13 873-885 4-16 (26)
476 KOG2264 Exostosin EXT1L [Signa 55.2 1.1E+02 0.0023 33.8 10.3 71 747-817 81-151 (907)
477 PF15254 CCDC14: Coiled-coil d 55.1 4E+02 0.0088 31.1 25.8 224 536-775 329-559 (861)
478 TIGR02338 gimC_beta prefoldin, 55.1 1.4E+02 0.0029 25.6 13.1 89 641-729 4-107 (110)
479 COG2331 Uncharacterized protei 54.7 5.1 0.00011 30.5 0.5 30 849-880 14-43 (82)
480 PF03962 Mnd1: Mnd1 family; I 54.6 2E+02 0.0044 27.5 14.1 98 598-696 62-163 (188)
481 PRK03947 prefoldin subunit alp 54.6 1.6E+02 0.0035 26.4 14.6 96 639-734 5-139 (140)
482 PF10205 KLRAQ: Predicted coil 54.5 1.3E+02 0.0028 25.2 11.3 75 735-809 2-76 (102)
483 PLN02248 cellulose synthase-li 54.4 8.2 0.00018 46.4 2.3 32 853-885 150-181 (1135)
484 PF00096 zf-C2H2: Zinc finger, 54.3 4.6 0.0001 23.0 0.2 10 873-882 3-12 (23)
485 KOG2807 RNA polymerase II tran 54.2 6 0.00013 39.8 1.1 38 838-876 333-373 (378)
486 smart00647 IBR In Between Ring 54.1 6 0.00013 29.8 0.8 47 825-873 8-64 (64)
487 KOG3476 Microtubule-associated 54.1 2 4.4E-05 33.3 -1.7 34 837-880 56-89 (100)
488 COG5183 SSM4 Protein involved 53.9 8.3 0.00018 43.8 2.2 51 837-887 14-72 (1175)
489 PRK04406 hypothetical protein; 53.8 1.1E+02 0.0023 24.1 8.6 56 709-764 3-58 (75)
490 PRK09678 DNA-binding transcrip 53.4 6 0.00013 30.5 0.7 23 835-857 1-39 (72)
491 PF04065 Not3: Not1 N-terminal 53.4 2.4E+02 0.0052 28.0 19.3 176 393-571 5-207 (233)
492 PF08826 DMPK_coil: DMPK coile 53.0 95 0.0021 23.2 9.9 60 756-815 1-60 (61)
493 KOG4809 Rab6 GTPase-interactin 52.7 3.7E+02 0.0079 29.9 35.7 369 462-851 234-614 (654)
494 PF04012 PspA_IM30: PspA/IM30 52.7 2.4E+02 0.0052 27.8 23.9 176 600-778 11-201 (221)
495 PF01485 IBR: IBR domain; Int 52.5 3 6.5E-05 31.5 -1.1 47 825-873 8-64 (64)
496 PRK10246 exonuclease subunit S 52.3 5.9E+02 0.013 32.2 79.9 573 210-832 179-882 (1047)
497 PF04102 SlyX: SlyX; InterPro 52.3 1E+02 0.0022 23.7 7.3 52 714-765 1-52 (69)
498 KOG1705 Uncharacterized conser 52.2 5.9 0.00013 31.2 0.5 39 837-884 29-68 (110)
499 PRK00564 hypA hydrogenase nick 52.2 4.8 0.0001 34.9 0.0 26 854-879 70-97 (117)
500 KOG0006 E3 ubiquitin-protein l 52.1 8.5 0.00018 38.3 1.7 31 853-883 342-410 (446)
No 1
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-40 Score=355.05 Aligned_cols=679 Identities=30% Similarity=0.428 Sum_probs=487.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002710 168 LASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIEN 247 (890)
Q Consensus 168 l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~l~~ 247 (890)
+..++.............++.++...+.+...+.. +...+......+..+...++..++.+..++..+...+..
T Consensus 7 ~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~------~~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~e 80 (698)
T KOG0978|consen 7 LAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNR------VEEALTVLFDELAEENEKLQNLADHLQEKHATLSEQISE 80 (698)
T ss_pred hHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555544444333 333455666677777777888888888887777777777
Q ss_pred HHHhhhhhhHHHHHHHHHHH----HHHHHHHHHHHHhhhhccccCccccCccccccCCCCCCCCCCcccccchHHHHhhH
Q 002710 248 YISSHSVDQAEIQHLAETMA----ELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSV 323 (890)
Q Consensus 248 ~~~~~~~~~~~l~~l~~~~~----~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 323 (890)
+.+.+.....+...+...++ +++....+...+...+..... +....+++.......+.-....+..+...+
T Consensus 81 l~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~-----~~~t~~~~~~~~~~~~t~~~t~~~~l~~~i 155 (698)
T KOG0978|consen 81 LLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALE-----HLNTYGNGNGSLSGTITVNSTELEELRDEI 155 (698)
T ss_pred HHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCCCCcccccCcccccchhhhhhhccch
Confidence 77777777777777774333 333433333333333321111 111111111111111223334577888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 324 EEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLR 403 (890)
Q Consensus 324 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~e~~~l~~ 403 (890)
+.+......+..+++.++..+..+..++..+...+..+....... ...+..++ +...+.... .
T Consensus 156 ee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~e~~~~~-----~NE~l~~~~-------~ 218 (698)
T KOG0978|consen 156 EELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSE-----TFELRCLQ-----YNEELQRKT-------M 218 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHH-----hhhhccccc-------c
Confidence 888888888899999999888888888887776652221111110 00000000 000000000 0
Q ss_pred HHHHHHhhhchHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHHHHHHHH
Q 002710 404 REKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSG-RKDIKAEFRVMASALSKEMGMMEA 482 (890)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~-~~~~~~el~~~~~~l~~~~~~l~~ 482 (890)
...++ .....+..++..+..+..+++++....+......+ +..+..++..+...+......+..
T Consensus 219 ~~~e~---------------~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~ 283 (698)
T KOG0978|consen 219 ESDEA---------------INSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKE 283 (698)
T ss_pred hhhhh---------------hccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 01222456667777777778887777666655555 568899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhhhhHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHhccCCCCcc
Q 002710 483 QLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLK-ALIEKLQKDKLESQIMLDMYGQEGRDPR 561 (890)
Q Consensus 483 ~~~~~~~~~~~l~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~~~~el~~l~-~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 561 (890)
...+|.........++.....+...+.........+...+.....++..+. .-+..+......++.....+.......+
T Consensus 284 ~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~ 363 (698)
T KOG0978|consen 284 YERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKER 363 (698)
T ss_pred HHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhH
Confidence 888899888888888888888777666645555555555555555555555 3333444445555555556666666666
Q ss_pred hHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHhHH---HHHHHHHHH
Q 002710 562 DLMEIKESERR-AHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLS-AAEAEIIELV-AKLDASER---DVMELEEAM 635 (890)
Q Consensus 562 ~i~~l~~~~~~-~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~l~-~l~~el~~l~-~~~~~~~~---~~~~l~~~~ 635 (890)
++.....+... ++..+..+...+......+.+.... +...+.+++. -.+.+...++ ...+...+ +...+...+
T Consensus 364 di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~-E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~L 442 (698)
T KOG0978|consen 364 DILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARA-ETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEEL 442 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Confidence 66655555433 6666666666555444433333333 3333333333 3334445554 23444455 444455566
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 636 KSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESA 715 (890)
Q Consensus 636 ~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~ 715 (890)
.........+..++..++.++++++.++.++..++...+.+.-.++.+...+.+.+..+..++..+...+..+....+.+
T Consensus 443 qk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~ 522 (698)
T KOG0978|consen 443 QKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKL 522 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 716 KLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNE 795 (890)
Q Consensus 716 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~ 795 (890)
...+..++++.+.+......+..++..+...++...+.+.++...+..++..+......+..++..+.++..++......
T Consensus 523 ~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 523 ELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred HHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHhHhcccCcccccccccccCCcccccCCCcccHHHHHHHhccCCCCcc
Q 002710 796 RKKLEEELMEVNNKVAELTSETGE-AAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCP 874 (890)
Q Consensus 796 ~~~l~~e~~~l~~~l~~l~~~~~~-~~~~~l~~e~~~~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP 874 (890)
..++++++..++.++.+++....+ .....|.+++..|+..++||+|..+|+++|+++|||+||+.|++..+.+|+|+||
T Consensus 603 ~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP 682 (698)
T KOG0978|consen 603 RKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCP 682 (698)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999988876 6789999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCcCCCCcccccC
Q 002710 875 GCGTAFGQSDVRFVKI 890 (890)
Q Consensus 875 ~C~~~~~~~d~~~~~~ 890 (890)
.|+.+||++||+||||
T Consensus 683 ~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 683 KCNAAFGANDVHRIHL 698 (698)
T ss_pred CCCCCCCcccccccCC
Confidence 9999999999999997
No 2
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=9.1e-18 Score=207.93 Aligned_cols=726 Identities=13% Similarity=0.117 Sum_probs=398.3
Q ss_pred CCCCCCCccccchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHhhcCCCC
Q 002710 38 TPSSPSSNKSVDSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRAGGGS 117 (890)
Q Consensus 38 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~ 117 (890)
.|......+...+..+......+...+..++.....+...++.|..+...|...+..+...+.++...+..-+ ..
T Consensus 309 ~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 383 (1311)
T TIGR00606 309 NHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDG-----FE 383 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-----CC
Confidence 3444444556666677777777777777777777777777888888888888777777777776666555211 10
Q ss_pred CCcccCCCcCcCCCCCCCCCChhHHHHHHhhhccccCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHhh
Q 002710 118 NVLQKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDA----QRVKT 193 (890)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~----~~~~~ 193 (890)
+ ...++..+..|...+.....+....+..+...+.. .+..+
T Consensus 384 -------~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L 428 (1311)
T TIGR00606 384 -------R----------------------------GPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQA 428 (1311)
T ss_pred -------C----------------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111123344444444444444444444433333 33334
Q ss_pred HHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhHHHHHHH--HHHHHHHH
Q 002710 194 KSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLA--ETMAELEE 271 (890)
Q Consensus 194 ~~l~~~l~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~--~~~~~le~ 271 (890)
+.+...+.. ...........+......+..+..++..+ ......+..++..+..+...+..+. .....+..
T Consensus 429 ~ei~~~l~~---~eq~~~~~~e~~~~~~~~i~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1311)
T TIGR00606 429 DEIRDEKKG---LGRTIELKKEILEKKQEELKFVIKELQQL----EGSSDRILELDQELRKAERELSKAEKNSLTETLKK 501 (1311)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 444444333 22222233334444444444444444433 2222334444444444444444333 11112221
Q ss_pred HHHHHHHHhhhhccccCccccCccccccCCCCCCCCCCcccccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 272 SRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQL 351 (890)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 351 (890)
.+.........++ .....++..+.... ......+++.-++.++......+..+...+......+
T Consensus 502 ~i~~~~~~~~~le---------~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 565 (1311)
T TIGR00606 502 EVKSLQNEKADLD---------RKLRKLDQEMEQLN-------HHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSL 565 (1311)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111111110 00000000000000 2444455555556666666666665555554444433
Q ss_pred HHHHHHhchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHh---hhhchhHH
Q 002710 352 ENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESADAARN---TVDDSESR 428 (890)
Q Consensus 352 ~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 428 (890)
-+ .+ ..+ ......+..+...+..++.....+...+..+...+..+...+.....++........ .+.+|+..
T Consensus 566 ~~-~~-~~~---~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~ 640 (1311)
T TIGR00606 566 LG-YF-PNK---KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESD 640 (1311)
T ss_pred cC-CC-CCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 22 11 000 000111122233333333333333333333333333222222222222221111111 23456778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 429 IERLEVQLQKSIIEKNDLGLKMEEAIQDSG----------------------RKDIKAEFRVMASALSKEMGMMEAQLNR 486 (890)
Q Consensus 429 ~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~----------------------~~~~~~el~~~~~~l~~~~~~l~~~~~~ 486 (890)
+..++..+..+..++..+.....++..-.. ...|..++......++.....+...+..
T Consensus 641 L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~ 720 (1311)
T TIGR00606 641 LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKK 720 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 888888888888877777665554321111 1256666666666666666777777777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcchHHHH
Q 002710 487 WKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEI 566 (890)
Q Consensus 487 ~~~~~~~l~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l 566 (890)
++.....+..+...+..+.... ...++.+...+..+..++..+...+..+...+..+...++.+......+..|.++
T Consensus 721 ~~~~~e~l~~l~~~~~~~~~l~---~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~ 797 (1311)
T TIGR00606 721 KEKRRDEMLGLAPGRQSIIDLK---EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERF 797 (1311)
T ss_pred HHHHHHHHHHhhhhHHHHHHHH---HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7777777777777777665332 3456777778888888888888888888888888888887777777777778888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH---HHHHH
Q 002710 567 KESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSK---DREAE 643 (890)
Q Consensus 567 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~---~~~~~ 643 (890)
..++..+..++..+...+...+....+..++..+..+..++..+...+..+.........++..|+..+..+ ...+.
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~ 877 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888766655577888888888888898888888888888888888888885444333 33344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---H
Q 002710 644 AYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQL----QQINALVESA---K 716 (890)
Q Consensus 644 ~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el----~~~~~~~~~~---~ 716 (890)
........+...+..+...+..+...+..++..+..+..++..+...+..+.........++ ..+...+..+ .
T Consensus 878 ~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1311)
T TIGR00606 878 TNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44446666777777777777777777777777777777777666666655444433333222 2222222211 1
Q ss_pred HH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHH
Q 002710 717 LR------------ILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSS--DKEYEQIQRKT 782 (890)
Q Consensus 717 ~~------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~--~~~l~~l~~~l 782 (890)
.. +..+...+......++.+..++..+...+..+...+.........+...+..+ ..++..+..++
T Consensus 958 ~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI 1037 (1311)
T TIGR00606 958 KDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEEL 1037 (1311)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 22222333333333444444444444444444444444444444444444444 45555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHhHhcccCcc
Q 002710 783 EDMRKELENERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKAIL 836 (890)
Q Consensus 783 ~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~--~~~~~l~~e~~~~~~~l 836 (890)
..+..++.. .....+..+...+..++..+.+.... |.+..++.++..+...|
T Consensus 1038 ~~l~~~~~~--~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1038 KQHLKEMGQ--MQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554333 34467788888888888888887776 88888888887777666
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.85 E-value=2.5e-12 Score=155.63 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=44.4
Q ss_pred ccchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHhhc
Q 002710 47 SVDSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRA 113 (890)
Q Consensus 47 ~~~~~~l~~~~~~l~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~~~ 113 (890)
..++..++.+...+...+...++.+.+|++++..|.+.+......+..+.+...++...+..+..++
T Consensus 1075 e~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1075 ESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666667777777777777777777777777777777777777777665333
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.84 E-value=7.6e-12 Score=151.62 Aligned_cols=121 Identities=15% Similarity=0.248 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002710 692 SFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSS 771 (890)
Q Consensus 692 ~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 771 (890)
..+......+..++.............+..+...+......++.+..+...+...+..+...+.++...+.++......+
T Consensus 1445 ~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~l 1524 (1930)
T KOG0161|consen 1445 AEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRL 1524 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444455555555555555666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 772 DKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAE 812 (890)
Q Consensus 772 ~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~ 812 (890)
..++..++..+.++...+...+...-+++-++..++..+.+
T Consensus 1525 e~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er 1565 (1930)
T KOG0161|consen 1525 EQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIER 1565 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555555554454444444444433
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.79 E-value=1.8e-10 Score=141.62 Aligned_cols=8 Identities=25% Similarity=0.293 Sum_probs=5.7
Q ss_pred CCCCccCC
Q 002710 869 RHRKCPGC 876 (890)
Q Consensus 869 ~~~~CP~C 876 (890)
+.+.||+|
T Consensus 1085 ~~~PaPf~ 1092 (1163)
T COG1196 1085 KYRPAPFY 1092 (1163)
T ss_pred hhCCCCee
Confidence 45568888
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.75 E-value=8.6e-10 Score=137.61 Aligned_cols=118 Identities=12% Similarity=0.181 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhHHHHHHHHH
Q 002710 524 EQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAAC 603 (890)
Q Consensus 524 ~~~~el~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l 603 (890)
.+...+..+...+..+...+..+...+..+......+..+......+..+..++..++..+..................+
T Consensus 748 ~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~el 827 (1311)
T TIGR00606 748 ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQV 827 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHH
Confidence 33344444444444444444444433333332222222222222233444555555555444333322211111122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 002710 604 QQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDRE 641 (890)
Q Consensus 604 ~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~ 641 (890)
+.++..+..++..+...+..+......+...+..++..
T Consensus 828 e~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~k 865 (1311)
T TIGR00606 828 NQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSK 865 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444333
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.73 E-value=2.3e-09 Score=136.44 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=15.5
Q ss_pred HHHHHhhhhhhHHHHHHHhhhhhHHHHHHHH
Q 002710 79 KELQEKQTSYDEMLITVNQLWNLFVDDLILL 109 (890)
Q Consensus 79 ~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~l 109 (890)
..+..+.......+..+...+..+...+..+
T Consensus 168 ~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L 198 (1179)
T TIGR02168 168 SKYKERRKETERKLERTRENLDRLEDILNEL 198 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555544444
No 8
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.71 E-value=8.5e-09 Score=123.27 Aligned_cols=128 Identities=17% Similarity=0.169 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002710 427 SRIERLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKV 506 (890)
Q Consensus 427 ~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~el~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~ 506 (890)
.....+..++..+..++..+......+..... .+...+......+..........+-........+..++.++..+..
T Consensus 997 ~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~--~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~ 1074 (1822)
T KOG4674|consen 997 DKLLDLSREISSLQNELKSLLKAASQANEQIE--DLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCND 1074 (1822)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444444333333 3334444443333333333333333333333444444444333333
Q ss_pred hhhhh-------hHHhHHH----hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccC
Q 002710 507 SLSAK-------TNEQKRL----TDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQE 556 (890)
Q Consensus 507 ~l~~l-------~~~~~~l----~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~~~~~~~~ 556 (890)
.+..+ .+.+..+ ...-..+..++..+...+..+......|...++.+...
T Consensus 1075 e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~ 1135 (1822)
T KOG4674|consen 1075 ELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQ 1135 (1822)
T ss_pred HHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333 2222221 12222344555556666666666666666666655544
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.71 E-value=1.7e-09 Score=133.30 Aligned_cols=43 Identities=33% Similarity=0.575 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 770 SSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAE 812 (890)
Q Consensus 770 ~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~ 812 (890)
.+..++..+...+..+...+...+.....+..++..+...+..
T Consensus 860 ~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~ 902 (1163)
T COG1196 860 ELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 10
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.70 E-value=1.2e-08 Score=122.02 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=34.3
Q ss_pred chhHhhhhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHH
Q 002710 49 DSAVLQYQNQKLVQQLDSQKHELQ------------SLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILL 109 (890)
Q Consensus 49 ~~~~l~~~~~~l~~~l~~~~~e~~------------~l~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~l 109 (890)
.+..|+.+|..|...+..+--.+. .+...+..+...+......+......+..|......+
T Consensus 533 nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y 605 (1822)
T KOG4674|consen 533 NINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMY 605 (1822)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777665555333222 2333445555555555666666666666665555555
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=99.67 E-value=6e-09 Score=126.72 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 321 DSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQ 355 (890)
Q Consensus 321 ~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~ 355 (890)
..+..+...+......+..+...+..+...+..+.
T Consensus 265 ~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~ 299 (880)
T PRK02224 265 ETIAETEREREELAEEVRDLRERLEELEEERDDLL 299 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444443333333
No 12
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.67 E-value=3.4e-09 Score=119.84 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 424 DSESRIERLEVQLQKSIIEKNDLGLK 449 (890)
Q Consensus 424 ~~~~~~~~l~~~l~~~~~~~~~l~~~ 449 (890)
..+..+..++..+..+..++..++..
T Consensus 235 ~Kd~ki~~lEr~l~~le~Ei~~L~~~ 260 (775)
T PF10174_consen 235 EKDTKIASLERMLRDLEDEIYRLRSR 260 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455555555555555555555543
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=99.67 E-value=2e-08 Score=122.21 Aligned_cols=12 Identities=8% Similarity=-0.399 Sum_probs=6.5
Q ss_pred cCCCcCcCCCCc
Q 002710 874 PGCGTAFGQSDV 885 (890)
Q Consensus 874 P~C~~~~~~~d~ 885 (890)
.+...||+.-|.
T Consensus 815 ~ilDEp~~~lD~ 826 (880)
T PRK02224 815 LILDEPTVFLDS 826 (880)
T ss_pred eEecCCcccCCH
Confidence 345566665553
No 14
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.66 E-value=1.5e-08 Score=114.71 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002710 55 YQNQKLVQQLDSQKHELQSLEAKIKELQEK 84 (890)
Q Consensus 55 ~~~~~l~~~l~~~~~e~~~l~~~~~~l~~~ 84 (890)
.+...+....+.++.++....+.++.....
T Consensus 3 ~ql~~~q~E~e~L~~ele~~~~~l~~~~~~ 32 (775)
T PF10174_consen 3 AQLERLQRENERLRRELERKQSKLGSSMNS 32 (775)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 344444555555555555555554444444
No 15
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=6.1e-08 Score=109.43 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHH
Q 002710 67 QKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVD 104 (890)
Q Consensus 67 ~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~ 104 (890)
|..-+..+..++..|....+.+...+..+.+....|..
T Consensus 265 y~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~ 302 (1293)
T KOG0996|consen 265 YKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEG 302 (1293)
T ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555556666666666666666555555554444
No 16
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.59 E-value=1.6e-16 Score=185.59 Aligned_cols=215 Identities=16% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCCccccchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHhhcCCCCCCcc
Q 002710 42 PSSNKSVDSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRAGGGSNVLQ 121 (890)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 121 (890)
.+.-+...+..+..+...-......+.+.+.+|++++..|...+......+....+...+|..++..+..++....+...
T Consensus 12 ~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~ 91 (859)
T PF01576_consen 12 QLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQ 91 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 34445666777777777777888888999999999999999999999999999999999999999998766654432211
Q ss_pred cCCCcCcCCCCCCCCCChhHHHHHHhhhccccCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002710 122 KLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFH 201 (890)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~ 201 (890)
.. .+....++..-..|.+-++... . ..+.....+..+|.+....+...+..+......++.....+.
T Consensus 92 aq------~E~~kkrE~El~~Lrr~LEe~~----~---~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~ 158 (859)
T PF01576_consen 92 AQ------IELNKKREAELAKLRRDLEEAN----L---QHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLE 158 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hh------HHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111333333333333321100 0 022223345555555555555544444444443443333333
Q ss_pred hccCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 002710 202 EKLSA-EDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAETMAEL 269 (890)
Q Consensus 202 ~~~~~-~~~~~~l~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~l 269 (890)
..+.. ...+..+.......+.....+...+..+..++......+..+......+..++..+...+.+.
T Consensus 159 ~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~ 227 (859)
T PF01576_consen 159 AELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEA 227 (859)
T ss_dssp ---------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32211 122223333334444444444444444444444444444444444444444444444333333
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=99.55 E-value=4.4e-07 Score=110.89 Aligned_cols=15 Identities=7% Similarity=-0.401 Sum_probs=9.1
Q ss_pred CCccCCCcCcCCCCc
Q 002710 871 RKCPGCGTAFGQSDV 885 (890)
Q Consensus 871 ~~CP~C~~~~~~~d~ 885 (890)
+.+.+...||+.-|+
T Consensus 813 ~~~lilDEp~~~lD~ 827 (880)
T PRK03918 813 IPLLILDEPTPFLDE 827 (880)
T ss_pred CCeEEEeCCCcccCH
Confidence 344556677776664
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.1e-15 Score=131.49 Aligned_cols=55 Identities=35% Similarity=0.794 Sum_probs=51.0
Q ss_pred cccccccccccCC--cccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcccccC
Q 002710 835 ILKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 890 (890)
Q Consensus 835 ~l~C~iC~~~~~~--~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 890 (890)
.+.||||++.+.. ||.++|||+||..||+..++ ..++||+||+.+...++++|||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK-NTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHH-hCCCCCCcccccchhhheeccC
Confidence 4899999999866 67789999999999999999 6899999999999999999997
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=99.53 E-value=5e-07 Score=110.37 Aligned_cols=32 Identities=25% Similarity=0.157 Sum_probs=11.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002710 745 VNLETTKWELADAEKELKWLKSAVTSSDKEYE 776 (890)
Q Consensus 745 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~ 776 (890)
..+..+...+..+...+..+...+..+...+.
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~ 697 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLE 697 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 20
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.53 E-value=3.9e-07 Score=105.94 Aligned_cols=299 Identities=14% Similarity=0.155 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHhHHH
Q 002710 565 EIKESERRAHSQAEVLKNALDE-HSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEE---AMKSKDR 640 (890)
Q Consensus 565 ~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~---~~~~~~~ 640 (890)
.+..+.......+..+...+.. ......+..+..+...+...+..+..++..++.........+..+.. .......
T Consensus 792 ~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~ 871 (1294)
T KOG0962|consen 792 RFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQ 871 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666555544 33445788888888888888999999999988888887777776665 3444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 641 EAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRIL 720 (890)
Q Consensus 641 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~ 720 (890)
.+....+.+..+...+.++.+.+......+..+...+..+...+..+......+..+....+.-.+.....+......+.
T Consensus 872 ~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~ 951 (1294)
T KOG0962|consen 872 KIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLH 951 (1294)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777888888888888888888888888888777777777777766666643322222222233333333222
Q ss_pred HHHHHHHHH---------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHH
Q 002710 721 HAEEQMKAC---------LTEALRYNSEDRHLAVNLETTKWELADAEKELKWLK--SAVTSSDKEYEQIQRKTEDMRKEL 789 (890)
Q Consensus 721 ~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~--~~~~~~~~~l~~l~~~l~~l~~~l 789 (890)
........+ .+++..+...+......+......+......-..++ -.+..+..++..+..++..+..++
T Consensus 952 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi 1031 (1294)
T KOG0962|consen 952 QIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQI 1031 (1294)
T ss_pred HHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211000 122222333333333333333322222222111111 123455566666666666666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHhHhcccCcccccccccccCC---------cccccCCCcc-
Q 002710 790 ENERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKAILKCGVCFDRPKE---------VVITKCFHLF- 857 (890)
Q Consensus 790 ~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~--~~~~~l~~e~~~~~~~l~C~iC~~~~~~---------~~~~~CgH~f- 857 (890)
.... ...+.++...+......+.+...+ |.+..+..++..++..+.-+-|.+.-.+ ++-+.|-|.-
T Consensus 1032 ~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~DL~k 1109 (1294)
T KOG0962|consen 1032 LEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNKDLDK 1109 (1294)
T ss_pred HHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 556667778888888888888877 9999999999999888877766654322 2223566664
Q ss_pred cHHHHHHH
Q 002710 858 CNPCIQRN 865 (890)
Q Consensus 858 C~~C~~~~ 865 (890)
|+.|++..
T Consensus 1110 y~~aLD~A 1117 (1294)
T KOG0962|consen 1110 YYKALDKA 1117 (1294)
T ss_pred HHHHHHHH
Confidence 66666544
No 21
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=9.3e-07 Score=100.21 Aligned_cols=109 Identities=14% Similarity=0.177 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 002710 593 VKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQN--------- 663 (890)
Q Consensus 593 ~~~~~~~~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~--------- 663 (890)
+..+..+..........+..++..+...+..+...+..+...+......+..+...+..+...+..+....
T Consensus 780 v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~ 859 (1293)
T KOG0996|consen 780 VEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKR 859 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444333331
Q ss_pred -HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 002710 664 -QHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALA 702 (890)
Q Consensus 664 -~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~ 702 (890)
..+...+..++.++..+.....+ .+.+..++..+..+-
T Consensus 860 l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~ 898 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIG 898 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhh
Confidence 22333344444444444432222 445555555555443
No 22
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.2e-06 Score=97.65 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=73.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 002710 615 IELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFL 694 (890)
Q Consensus 615 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l 694 (890)
.++..++......+..-...+.......+.+.-+.+.+...+...+..+..+...+..+...+..+...+.........+
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~ 869 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKA 869 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 33333333333333333334444444444455555555555555555555544455555555444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002710 695 LSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLK 765 (890)
Q Consensus 695 ~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 765 (890)
..++......+......+..+......+..........+..+..++..+..+-......+..+.....++.
T Consensus 870 ~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 870 QAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 44444444444444444444444444444444444455555555555555555555556655555555444
No 23
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.40 E-value=1.2e-13 Score=125.48 Aligned_cols=57 Identities=30% Similarity=0.705 Sum_probs=50.7
Q ss_pred cCcccccccccccCCcccccCCCcccHHHHHHHhcc---------------CCCCccCCCcCcCCCCccccc
Q 002710 833 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI---------------RHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 833 ~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~---------------~~~~CP~C~~~~~~~d~~~~~ 889 (890)
...+.|+||++.+.+|++++|||+||..||..|+.. +...||.|+.++...++.|+|
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 345899999999999999999999999999999742 234699999999999999998
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.38 E-value=5.7e-14 Score=164.33 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002710 719 ILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENE 792 (890)
Q Consensus 719 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~ 792 (890)
|..++..+..+...++.-..........+..+...+.++...+.+-+.....+...+..++..+..+..+++.+
T Consensus 745 i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eea 818 (859)
T PF01576_consen 745 IAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEA 818 (859)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 33344444444444443333333344444444444444444444333333333344444444444433333333
No 25
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.35 E-value=4.8e-13 Score=90.70 Aligned_cols=39 Identities=36% Similarity=0.869 Sum_probs=32.3
Q ss_pred ccccccccCCcccccCCCcccHHHHHHHhccCCC---CccCC
Q 002710 838 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHR---KCPGC 876 (890)
Q Consensus 838 C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~---~CP~C 876 (890)
||||.+.|++||+++|||+||..||..+++.... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999986544 59998
No 26
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.33 E-value=6.3e-13 Score=102.16 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=49.5
Q ss_pred ccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCccccc
Q 002710 836 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
+.||||++.+.+||+++|||+||..|+..|+.. ...||.||.+++..|+.+++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCH
Confidence 689999999999999999999999999999985 77899999999999988874
No 27
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.29 E-value=4.5e-13 Score=128.38 Aligned_cols=56 Identities=38% Similarity=0.857 Sum_probs=51.8
Q ss_pred CcccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcccccC
Q 002710 834 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 890 (890)
Q Consensus 834 ~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 890 (890)
..+.|.||++.|+-|+++||||+||.-||..++. ....||.|..+|...+++.+||
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhH
Confidence 3489999999999999999999999999999998 6888999999999999988764
No 28
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.6e-12 Score=123.52 Aligned_cols=56 Identities=30% Similarity=0.648 Sum_probs=49.5
Q ss_pred cCcccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCccccc
Q 002710 833 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 833 ~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
.....|++|+++..+|..+||||+||-+||..|... ...||.||..|.+++|.-++
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcceeeec
Confidence 345799999999999999999999999999999985 34499999999999987654
No 29
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.7e-12 Score=119.80 Aligned_cols=57 Identities=33% Similarity=0.742 Sum_probs=52.2
Q ss_pred cCcccccccccccCCcccccCCCcccHHHHHHHhccCCCC--ccCCCcCcCCCCccccc
Q 002710 833 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRK--CPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 833 ~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~--CP~C~~~~~~~d~~~~~ 889 (890)
-..+.|.||++.-++||++.|||+||-.||..|+.++... ||+|...++...|.|||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 3568999999999999999999999999999999875543 89999999999999998
No 30
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=2.3e-12 Score=133.20 Aligned_cols=61 Identities=33% Similarity=0.587 Sum_probs=54.2
Q ss_pred hHhcccCcccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCccccc
Q 002710 828 EIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 828 e~~~~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
.+..++..+.|+||++.|.+|++++|||+||..|+..|+.. ...||.|+.++...+++++|
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~ 79 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNW 79 (397)
T ss_pred cccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccch
Confidence 45667778999999999999999999999999999999984 56899999999988887776
No 31
>PRK01156 chromosome segregation protein; Provisional
Probab=99.25 E-value=2.9e-05 Score=94.70 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 002710 520 DKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMY 553 (890)
Q Consensus 520 ~~~~~~~~el~~l~~~~~~l~~~~~~l~~~~~~~ 553 (890)
..+..+..++..+...+..+...+..+....+.+
T Consensus 416 ~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l 449 (895)
T PRK01156 416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEML 449 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444555555555555555555555544433
No 32
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.24 E-value=3e-12 Score=86.32 Aligned_cols=38 Identities=45% Similarity=1.096 Sum_probs=33.8
Q ss_pred ccccccccCCc-ccccCCCcccHHHHHHHhccCCCCccCC
Q 002710 838 CGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGC 876 (890)
Q Consensus 838 C~iC~~~~~~~-~~~~CgH~fC~~C~~~~~~~~~~~CP~C 876 (890)
|+||++.+.+| ++++|||+||..|+..|+.. ..+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 68899999999999999996 7899998
No 33
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.4e-05 Score=89.35 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=19.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 317 QELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNE 357 (890)
Q Consensus 317 ~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~ 357 (890)
..|...+..+..........+......+.....++..+...
T Consensus 297 ~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~ 337 (1174)
T KOG0933|consen 297 KALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKN 337 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 34444454444444444444444444444444444444433
No 34
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4.1e-12 Score=130.81 Aligned_cols=56 Identities=32% Similarity=0.708 Sum_probs=51.7
Q ss_pred cccccccccccCCcccccCCCcccHHHHHHHhccC----CCCccCCCcCcCCCCcccccC
Q 002710 835 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR----HRKCPGCGTAFGQSDVRFVKI 890 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~----~~~CP~C~~~~~~~d~~~~~~ 890 (890)
.+.||||+..+.-|+.+.|||+||.+||-.++.+. .++||+|+..|+..||+||||
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 68999999999999999999999999999998764 556999999999999999986
No 35
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.19 E-value=8.3e-12 Score=89.77 Aligned_cols=45 Identities=42% Similarity=1.072 Sum_probs=40.6
Q ss_pred ccccccccccCCcccccCCCc-ccHHHHHHHhccCCCCccCCCcCcC
Q 002710 836 LKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
..|+||++.+.+++++||||+ ||..|+..|+. ...+||+||.++.
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 679999999999999999999 99999999998 7888999999986
No 36
>PRK01156 chromosome segregation protein; Provisional
Probab=99.19 E-value=5.7e-05 Score=92.14 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHhH
Q 002710 527 AEIKSLKALIEKLQKDK 543 (890)
Q Consensus 527 ~el~~l~~~~~~l~~~~ 543 (890)
.++..+...+..+...+
T Consensus 476 ~~i~~l~~~i~~l~~~~ 492 (895)
T PRK01156 476 EKKSRLEEKIREIEIEV 492 (895)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 37
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.18 E-value=5.9e-12 Score=90.04 Aligned_cols=55 Identities=35% Similarity=0.780 Sum_probs=30.3
Q ss_pred cccCcccccccccccCCccc-ccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcccc
Q 002710 831 DCKAILKCGVCFDRPKEVVI-TKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 888 (890)
Q Consensus 831 ~~~~~l~C~iC~~~~~~~~~-~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~ 888 (890)
.++..+.|++|++.++.||+ ..|.|+||..|+...+.+ .||.|+.|.-..|++-+
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhh
Confidence 34455899999999999986 599999999999887663 49999999999998643
No 38
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.17 E-value=1e-11 Score=97.19 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=46.1
Q ss_pred cccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCccccc
Q 002710 835 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
.+.||||+..+.+||+++|||+||..||..|+..+...||+||.++...++.|++
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence 4889999999999999999999999999999997789999999999999998874
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.17 E-value=7.1e-12 Score=117.47 Aligned_cols=56 Identities=32% Similarity=0.598 Sum_probs=48.9
Q ss_pred cccCcccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCccc
Q 002710 831 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 887 (890)
Q Consensus 831 ~~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~ 887 (890)
.+..++.|-||..+++-|++++|||+||+-||..++. .+..||.||.+|...-++.
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~ 76 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRG 76 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhccc
Confidence 4456689999999999999999999999999999999 5888999999987655443
No 40
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.14 E-value=4.7e-05 Score=86.99 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002710 605 QRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETI 652 (890)
Q Consensus 605 ~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l 652 (890)
..+..++.++..++.++..+......++..+......+..+...+..+
T Consensus 661 ~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~ 708 (1074)
T KOG0250|consen 661 DEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQI 708 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445544444444444444444333333333333333333333333
No 41
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.4e-05 Score=85.30 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=59.9
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 002710 621 LDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQA 700 (890)
Q Consensus 621 ~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~ 700 (890)
++....++..|-.++.......-.+..+.....+.+..+......+..++..+......+...+..++.....+......
T Consensus 463 ~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~ 542 (698)
T KOG0978|consen 463 FEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESK 542 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 33333444444444444444444445555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 701 LARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHL 743 (890)
Q Consensus 701 l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 743 (890)
+..++..+...++.....+..+...+..++..++.....+.++
T Consensus 543 l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i 585 (698)
T KOG0978|consen 543 LIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQI 585 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444444444444444443333333
No 42
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.14 E-value=0.00011 Score=90.90 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=23.2
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 316 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNE 357 (890)
Q Consensus 316 ~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~ 357 (890)
...+...+......+......+..++..+..+...+..+...
T Consensus 437 dEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 437 ADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555554444
No 43
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.08 E-value=2e-11 Score=85.14 Aligned_cols=40 Identities=33% Similarity=0.810 Sum_probs=34.5
Q ss_pred cccccccccC---CcccccCCCcccHHHHHHHhccCCCCccCCC
Q 002710 837 KCGVCFDRPK---EVVITKCFHLFCNPCIQRNLEIRHRKCPGCG 877 (890)
Q Consensus 837 ~C~iC~~~~~---~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~ 877 (890)
.|+||++.+. .++.++|||+||..|+..|+.. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999984 4778899999999999999995 67999997
No 44
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.08 E-value=3.5e-11 Score=81.14 Aligned_cols=36 Identities=31% Similarity=0.805 Sum_probs=23.2
Q ss_pred ccccccccCC----cccccCCCcccHHHHHHHhccC---CCCcc
Q 002710 838 CGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIR---HRKCP 874 (890)
Q Consensus 838 C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~---~~~CP 874 (890)
||||.+ |.+ |++++|||+||..|++.++..+ ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999853 45688
No 45
>PHA02926 zinc finger-like protein; Provisional
Probab=99.07 E-value=7.5e-11 Score=107.59 Aligned_cols=56 Identities=27% Similarity=0.633 Sum_probs=43.0
Q ss_pred CcccccccccccCC---------cccccCCCcccHHHHHHHhccC-----CCCccCCCcCcCCCCccccc
Q 002710 834 AILKCGVCFDRPKE---------VVITKCFHLFCNPCIQRNLEIR-----HRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 834 ~~l~C~iC~~~~~~---------~~~~~CgH~fC~~C~~~~~~~~-----~~~CP~C~~~~~~~d~~~~~ 889 (890)
....|+||++...+ +++.+|||+||..||..|..++ .+.||+||..|..=-..++|
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 35899999987422 4666999999999999998754 34599999999864444444
No 46
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.06 E-value=7.1e-11 Score=81.20 Aligned_cols=39 Identities=36% Similarity=0.906 Sum_probs=36.3
Q ss_pred ccccccccCCcc-cccCCCcccHHHHHHHhc-cCCCCccCC
Q 002710 838 CGVCFDRPKEVV-ITKCFHLFCNPCIQRNLE-IRHRKCPGC 876 (890)
Q Consensus 838 C~iC~~~~~~~~-~~~CgH~fC~~C~~~~~~-~~~~~CP~C 876 (890)
|+||++.+..++ +++|||+||..|+..|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 899999999999999999 566779998
No 47
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.05 E-value=8.4e-11 Score=81.55 Aligned_cols=41 Identities=32% Similarity=0.916 Sum_probs=35.8
Q ss_pred ccccccccc---CCcccccCCCcccHHHHHHHhccCCCCccCCCc
Q 002710 837 KCGVCFDRP---KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 878 (890)
Q Consensus 837 ~C~iC~~~~---~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~ 878 (890)
.|++|+..| ..+++++|||+||..|+..+. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999999 348899999999999999997 46788999985
No 48
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.03 E-value=1.2e-10 Score=111.81 Aligned_cols=48 Identities=27% Similarity=0.738 Sum_probs=40.9
Q ss_pred CcccccccccccCC--------cccccCCCcccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 834 AILKCGVCFDRPKE--------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 834 ~~l~C~iC~~~~~~--------~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
....|+||++.+.+ +++++|||+||..|+..|+. ....||+||.+|..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEeeE
Confidence 34789999998755 25678999999999999988 57789999999985
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.01 E-value=0.00036 Score=86.87 Aligned_cols=32 Identities=6% Similarity=0.112 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 323 VEEAKILAADRLSEVEEAQQDNINLSKQLENL 354 (890)
Q Consensus 323 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l 354 (890)
+..+...+......+..+...+.....++..+
T Consensus 354 l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~ 385 (1201)
T PF12128_consen 354 LPEWRNELENLQEQLDLLTSKHQDIESKYNKL 385 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 50
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.95 E-value=0.00016 Score=78.68 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=21.9
Q ss_pred CCcccHHHHHHHhccCCCCccCCCcC
Q 002710 854 FHLFCNPCIQRNLEIRHRKCPGCGTA 879 (890)
Q Consensus 854 gH~fC~~C~~~~~~~~~~~CP~C~~~ 879 (890)
.|.-|..|+.+.+++.+.+-|.||.+
T Consensus 632 e~~elvtyL~sqi~~kqtkqpklgrr 657 (1265)
T KOG0976|consen 632 EHPELVTYLPSQIDAKQTKQPKLGRR 657 (1265)
T ss_pred ccHHHHhhchhhhchhcccCCccCCh
Confidence 36778899998888888999999865
No 51
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.95 E-value=0.00021 Score=79.96 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 776 EQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAE 812 (890)
Q Consensus 776 ~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~ 812 (890)
...+.++..+..+++.....+...+..+......+..
T Consensus 389 ~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ea 425 (522)
T PF05701_consen 389 EEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEA 425 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444444444444433
No 52
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.93 E-value=0.00029 Score=80.28 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002710 594 KAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQA 655 (890)
Q Consensus 594 ~~~~~~~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~ 655 (890)
+.+......+..+|+.+-..+..-.............+...+.........+..++..+...
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333444444444444444433333333333333344444444444444444444444333
No 53
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.92 E-value=6.7e-10 Score=78.97 Aligned_cols=44 Identities=34% Similarity=0.888 Sum_probs=37.7
Q ss_pred cccccccccCCcccc-cCCCcccHHHHHHHhccCCCCccCCCcCc
Q 002710 837 KCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAF 880 (890)
Q Consensus 837 ~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 880 (890)
.|+||++.+..++.+ +|||.||..|+..|+......||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999999676666 59999999999999986678899999764
No 54
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.5e-10 Score=105.59 Aligned_cols=51 Identities=29% Similarity=0.580 Sum_probs=45.6
Q ss_pred cccccccccccCCcccccCCCcccHHHHHH-HhccCCCCccCCCcCcCCCCc
Q 002710 835 ILKCGVCFDRPKEVVITKCFHLFCNPCIQR-NLEIRHRKCPGCGTAFGQSDV 885 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~-~~~~~~~~CP~C~~~~~~~d~ 885 (890)
.+.|+||++....|+.++|||+||.+|+-. |...+.-.||.||......+|
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 478999999999999999999999999999 766555569999999998877
No 55
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.89 E-value=0.00044 Score=79.34 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=16.4
Q ss_pred CCcccccCC-CcccHHHHHHHhccCCCCccC-CCcCc
Q 002710 846 KEVVITKCF-HLFCNPCIQRNLEIRHRKCPG-CGTAF 880 (890)
Q Consensus 846 ~~~~~~~Cg-H~fC~~C~~~~~~~~~~~CP~-C~~~~ 880 (890)
.++..|.=| ..|---|+--.+- ..-.||+ |--.|
T Consensus 985 ~d~~gLSGGERSFsTv~lllsLW-~~me~Pfr~LDEF 1020 (1074)
T KOG0250|consen 985 RDTRGLSGGERSFSTVCLLLSLW-EVMECPFRALDEF 1020 (1074)
T ss_pred ccccccCcccchHHHHHHHHHHh-HhhcCchhhhhHH
Confidence 334444445 3465566543332 2445886 43333
No 56
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.88 E-value=8.4e-06 Score=81.13 Aligned_cols=204 Identities=17% Similarity=0.243 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 602 ACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLV 681 (890)
Q Consensus 602 ~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 681 (890)
........++.++..|...+..+...+......+.....++..+..........+..+..........+..++..+....
T Consensus 26 ~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~ 105 (237)
T PF00261_consen 26 EAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAK 105 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444555555555555
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002710 682 SESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKEL 761 (890)
Q Consensus 682 ~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 761 (890)
.....+...+..+...+..++..+......+..+...+..++..+......+..++............++..|..+...+
T Consensus 106 ~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~l 185 (237)
T PF00261_consen 106 RRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKL 185 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555554455555555555555555555
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 762 KWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELME 805 (890)
Q Consensus 762 ~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~ 805 (890)
.............+..+...+..+...+.........+..+++.
T Consensus 186 keaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 186 KEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555444444444433
No 57
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.86 E-value=1.1e-09 Score=74.96 Aligned_cols=39 Identities=36% Similarity=0.960 Sum_probs=36.2
Q ss_pred ccccccccCCcccccCCCcccHHHHHHHhccCCCCccCC
Q 002710 838 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 876 (890)
Q Consensus 838 C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C 876 (890)
|+||++....+++++|||.||..|+..|+......||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789998
No 58
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.81 E-value=0.00044 Score=74.65 Aligned_cols=16 Identities=38% Similarity=0.401 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 002710 432 LEVQLQKSIIEKNDLG 447 (890)
Q Consensus 432 l~~~l~~~~~~~~~l~ 447 (890)
++..+..+..+...+.
T Consensus 141 lQ~qlE~~qkE~eeL~ 156 (546)
T PF07888_consen 141 LQNQLEECQKEKEELL 156 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 59
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.81 E-value=0.0017 Score=81.06 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 002710 531 SLKALIEKLQKDKLESQI 548 (890)
Q Consensus 531 ~l~~~~~~l~~~~~~l~~ 548 (890)
.+...+..+...+..+..
T Consensus 515 ~~~~~~~~~~~~~~~l~~ 532 (1201)
T PF12128_consen 515 QARRELEELRAQIAELQR 532 (1201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 60
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.78 E-value=1.9e-05 Score=78.65 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002710 667 LQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVN 746 (890)
Q Consensus 667 ~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 746 (890)
.............+..........+..+...+.............+......+..++..+......++.+...+..+...
T Consensus 70 e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~e 149 (237)
T PF00261_consen 70 EKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEE 149 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Confidence 33333333333333333333344444444444444444444444444455555555555555555555555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002710 747 LETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETG 818 (890)
Q Consensus 747 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~~ 818 (890)
+..+...+..+.............+...+..+...+.........++..+..|+..++.+...+......+.
T Consensus 150 l~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~ 221 (237)
T PF00261_consen 150 LKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK 221 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665666666666666677777777776666666666677777777776666666555544
No 61
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=6.1e-10 Score=75.28 Aligned_cols=52 Identities=27% Similarity=0.610 Sum_probs=44.5
Q ss_pred ccccccccccCCcccccCCCcc-cHHHHHHHhccCCCCccCCCcCcCCCCccccc
Q 002710 836 LKCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~f-C~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
-.|+||++.+-+.|+..|||+. |+.|--+.++.....||+||.++.. |++-|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d--vIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD--VIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH--HHHhh
Confidence 4699999999999999999995 9999999888777889999999864 44433
No 62
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.78 E-value=0.00056 Score=73.89 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002710 797 KKLEEELMEVNNKVAE 812 (890)
Q Consensus 797 ~~l~~e~~~l~~~l~~ 812 (890)
..|...+..|..+++.
T Consensus 441 QeL~~yi~~Le~r~~~ 456 (546)
T PF07888_consen 441 QELLEYIERLEQRLDK 456 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444333
No 63
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.77 E-value=0.0009 Score=75.39 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002710 212 QLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAETMAELEESRRKLVSLKMQKD 284 (890)
Q Consensus 212 ~l~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~le~~~~~~~~~~~~~~ 284 (890)
.+.-.+..++..+..++.++.+.-..+..+..+++.++.++..+..++..+..........+..+..+..+.+
T Consensus 174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~ae 246 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAE 246 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhh
Confidence 4555666666666666666666555555555555555555555544444444333333334444444443333
No 64
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=0.00094 Score=75.02 Aligned_cols=31 Identities=6% Similarity=0.019 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 375 DQLQHWNVEVERYKALTDSLLIDRSLVLRRE 405 (890)
Q Consensus 375 ~~~~~~~~~l~~~~~~~~~l~~e~~~l~~~~ 405 (890)
.++..+..-+.........++.++..+...+
T Consensus 397 ~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l 427 (1200)
T KOG0964|consen 397 SEIEKLKRGINDTKEQENILQKEIEDLESEL 427 (1200)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444333333
No 65
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.75 E-value=0.0023 Score=79.49 Aligned_cols=60 Identities=10% Similarity=0.190 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002710 755 ADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELT 814 (890)
Q Consensus 755 ~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~ 814 (890)
.++...+.....+...++..+.....++..+...+.........+...+...+..+...-
T Consensus 1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~ 1122 (1486)
T PRK04863 1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVL 1122 (1486)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666677667777777777777777777777777777766655543
No 66
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.75 E-value=0.00098 Score=75.10 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002710 426 ESRIERLEVQLQKSIIEKNDLGLKMEEAIQDS 457 (890)
Q Consensus 426 ~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~ 457 (890)
..++.+++..-..+.....+++..+..+....
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrars 294 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARS 294 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 44555555555555555555555555544444
No 67
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=0.0012 Score=74.11 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhhhhhh
Q 002710 492 DEALSLREKAVSLKVSL 508 (890)
Q Consensus 492 ~~l~~l~~~~~~l~~~l 508 (890)
..+..+..++...+..|
T Consensus 481 ~~i~~~~~dl~~~~~~L 497 (1200)
T KOG0964|consen 481 SLIANLEEDLSRAEKNL 497 (1200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 68
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.72 E-value=0.0014 Score=74.71 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 369 LYNLVNDQLQHWNVEVERYKALTDSLLI 396 (890)
Q Consensus 369 ~~~~l~~~~~~~~~~l~~~~~~~~~l~~ 396 (890)
.+..+...+...+..+..+...+..+..
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~~ 133 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEELQELLE 133 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 69
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.68 E-value=0.00041 Score=74.91 Aligned_cols=35 Identities=23% Similarity=0.125 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 002710 520 DKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYG 554 (890)
Q Consensus 520 ~~~~~~~~el~~l~~~~~~l~~~~~~l~~~~~~~~ 554 (890)
..+....++...+..++..+..++..++..+....
T Consensus 99 ~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~ 133 (546)
T KOG0977|consen 99 KLLDETARERAKLEIEITKLREELKELRKKLEKAE 133 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555554443
No 70
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.65 E-value=0.0018 Score=72.62 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002710 427 SRIERLEVQLQKSIIEKN 444 (890)
Q Consensus 427 ~~~~~l~~~l~~~~~~~~ 444 (890)
..+..|..++..+...+.
T Consensus 172 ~kve~L~~Ei~~lke~l~ 189 (522)
T PF05701_consen 172 EKVEELSKEIIALKESLE 189 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 71
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.63 E-value=3.1e-05 Score=74.51 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=8.7
Q ss_pred CCCCccCCCcCc
Q 002710 869 RHRKCPGCGTAF 880 (890)
Q Consensus 869 ~~~~CP~C~~~~ 880 (890)
.-..||.||.-.
T Consensus 220 ~iv~CP~CgRIL 231 (239)
T COG1579 220 EIVFCPYCGRIL 231 (239)
T ss_pred CCccCCccchHH
Confidence 455799998654
No 72
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.6e-09 Score=102.79 Aligned_cols=56 Identities=25% Similarity=0.650 Sum_probs=48.1
Q ss_pred hHhcccCcccccccccccCCcccc-cCCCcccHHHHHHHhccCCCCccCCCcCcCCC
Q 002710 828 EIKDCKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 883 (890)
Q Consensus 828 e~~~~~~~l~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 883 (890)
.+..+...+.|+||...++...++ .|+|.||+.||...+...+..||+||+.....
T Consensus 36 ~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 36 DLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred cHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 345556669999999999998777 79999999999999998899999999887643
No 73
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.59 E-value=0.00087 Score=70.74 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=16.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 768 VTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNN 808 (890)
Q Consensus 768 ~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~ 808 (890)
+..++.++..+...+.....+...+-...-.|+.+|..++.
T Consensus 264 i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 264 IAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33334444444444444333333333333444444444443
No 74
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=0.0036 Score=71.61 Aligned_cols=69 Identities=7% Similarity=0.047 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002710 640 REAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQI 708 (890)
Q Consensus 640 ~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~ 708 (890)
..+..+...+..+...+..+...+.....++...+..+..+..++..+...+......+..++..+..+
T Consensus 683 ~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~v 751 (1141)
T KOG0018|consen 683 SKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKV 751 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444445555555555444444444444444444444444444333
No 75
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.54 E-value=0.0042 Score=70.90 Aligned_cols=12 Identities=17% Similarity=0.005 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 002710 216 IDDMMKEEAKNL 227 (890)
Q Consensus 216 ~~~~~~~e~~~~ 227 (890)
....+++++..+
T Consensus 1202 ~f~~me~kl~~i 1213 (1758)
T KOG0994|consen 1202 RFLDMEEKLEEI 1213 (1758)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 76
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.52 E-value=2.8e-08 Score=88.08 Aligned_cols=47 Identities=32% Similarity=0.703 Sum_probs=41.7
Q ss_pred cccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 835 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
-+.|.||...|..||++.|||.||..|.-.... .+..|-+|++....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcceecchhhcc
Confidence 368999999999999999999999999988877 67889999987643
No 77
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.6e-08 Score=94.51 Aligned_cols=48 Identities=25% Similarity=0.658 Sum_probs=44.5
Q ss_pred ccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCC
Q 002710 836 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 883 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 883 (890)
-.|+||+....-||.++|+|.||+.||+.......+.||+||.+|..+
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 469999999999999999999999999999998888899999999865
No 78
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.50 E-value=0.0027 Score=66.98 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=8.4
Q ss_pred HHHHHhHhcccCcc
Q 002710 823 QKLQDEIKDCKAIL 836 (890)
Q Consensus 823 ~~l~~e~~~~~~~l 836 (890)
-.|+.+|..|+..+
T Consensus 293 ~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 293 LALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 34666777776543
No 79
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.48 E-value=0.0011 Score=71.57 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 002710 475 KEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKT 512 (890)
Q Consensus 475 ~~~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~l~ 512 (890)
.++..|.....++..+...+..|+.+-..|...+..+.
T Consensus 39 rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr 76 (546)
T KOG0977|consen 39 REKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLR 76 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555554444444443
No 80
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.47 E-value=0.0058 Score=69.35 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 002710 593 VKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFED---MQTQNQHLLQQ 669 (890)
Q Consensus 593 ~~~~~~~~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~---~~~~~~~~~~~ 669 (890)
++.+......+..+|+.+-..+..--.........+..+...+.........+..++..+...|.- --.....+..+
T Consensus 273 l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~ 352 (560)
T PF06160_consen 273 LDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQ 352 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 333334444444444444433333333333334444444444444444444555555555444421 11122333344
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002710 670 VAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNL 747 (890)
Q Consensus 670 ~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (890)
+..+......+...+..-...+..+......+...+..+......+...+..+...-...+..+..+...+......+
T Consensus 353 l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l 430 (560)
T PF06160_consen 353 LKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRL 430 (560)
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444455555555555555555555555555555555554555444444444444444444
No 81
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.47 E-value=7.8e-08 Score=74.95 Aligned_cols=40 Identities=30% Similarity=0.786 Sum_probs=32.5
Q ss_pred cccccccccCC-------------cccccCCCcccHHHHHHHhccCCCCccCCC
Q 002710 837 KCGVCFDRPKE-------------VVITKCFHLFCNPCIQRNLEIRHRKCPGCG 877 (890)
Q Consensus 837 ~C~iC~~~~~~-------------~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~ 877 (890)
.|+||...+.+ ++..+|||.|...||..|+. ....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-QNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence 59999999833 23448999999999999998 566999997
No 82
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.45 E-value=0.0046 Score=67.09 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=8.1
Q ss_pred hHHHHhhHHHHHHHHHH
Q 002710 316 LQELKDSVEEAKILAAD 332 (890)
Q Consensus 316 ~~~l~~~l~~~~~~~~~ 332 (890)
+..+....+.++-.+..
T Consensus 192 iekMi~aFEeLR~qAEn 208 (786)
T PF05483_consen 192 IEKMIAAFEELRVQAEN 208 (786)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555555554444433
No 83
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.45 E-value=0.0072 Score=69.12 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=28.8
Q ss_pred HHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 002710 186 IDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLA 263 (890)
Q Consensus 186 ~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~ 263 (890)
+..+...+..+...|....-+...+.++......+...+......+.. .+..|......+.-....++.|+
T Consensus 1203 f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~-------~E~~Lsdi~~~~~~a~~~LesLq 1273 (1758)
T KOG0994|consen 1203 FLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQ-------EEETLSDITNSLPLAGKDLESLQ 1273 (1758)
T ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hhhhhhhhhhccchhhhhHHHHH
Confidence 333444444444444332222233334444444444444444444444 44444444444443344444444
No 84
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.3e-07 Score=92.83 Aligned_cols=47 Identities=26% Similarity=0.535 Sum_probs=40.5
Q ss_pred Cccccccccccc-------------CCcccccCCCcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 834 AILKCGVCFDRP-------------KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 834 ~~l~C~iC~~~~-------------~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
..-.|.||++.. +.|..+||||+|-.+|++.|.. |+-.||+||.|+.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCccc
Confidence 357899999973 2278999999999999999999 8999999999943
No 85
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.39 E-value=0.0072 Score=66.39 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 462 IKAEFRVMASALSKEMGMMEAQLN 485 (890)
Q Consensus 462 ~~~el~~~~~~l~~~~~~l~~~~~ 485 (890)
+..++..+..........+....+
T Consensus 181 ~~~q~~tkl~e~~~en~~le~k~~ 204 (1265)
T KOG0976|consen 181 FNMEFQTKLAEANREKKALEEKLE 204 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343333333333333333333
No 86
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=98.37 E-value=1.6e-07 Score=65.24 Aligned_cols=49 Identities=31% Similarity=0.592 Sum_probs=41.7
Q ss_pred CcccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCc
Q 002710 834 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 885 (890)
Q Consensus 834 ~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 885 (890)
....|-.|...-...+++||||+.|..|.... +-.-||+|+.+|...|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCCC
Confidence 34678888888788999999999999999866 66679999999998775
No 87
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.2e-07 Score=90.85 Aligned_cols=46 Identities=30% Similarity=0.624 Sum_probs=41.9
Q ss_pred ccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 836 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
+.|-||...|.+||++.|||.||..|.-..+. ++.+|++|+..+..
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccc-cCCcceeccccccc
Confidence 57999999999999999999999999998887 77889999987654
No 88
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.35 E-value=2.9e-07 Score=91.25 Aligned_cols=38 Identities=24% Similarity=0.611 Sum_probs=33.5
Q ss_pred cCCCcccHHHHHHHhccCCCCccCCCcCcCCCCccccc
Q 002710 852 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 852 ~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
+|||.||.+|+..++..+...||.|+.++..+++++..
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~ 62 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQL 62 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccc
Confidence 89999999999998876777899999999998876653
No 89
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.4e-07 Score=87.69 Aligned_cols=47 Identities=30% Similarity=0.631 Sum_probs=39.7
Q ss_pred cccccccccccCCcccc-cCCCcccHHHHHHHhccC-CCCccCCCcCcC
Q 002710 835 ILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIR-HRKCPGCGTAFG 881 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~-~~~CP~C~~~~~ 881 (890)
...||+|++.+..|.+. +|||+||+.|+....... ...||.||.+..
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 46899999999998666 799999999999886632 357999998876
No 90
>PF04641 Rtf2: Rtf2 RING-finger
Probab=98.35 E-value=2.4e-07 Score=93.36 Aligned_cols=56 Identities=21% Similarity=0.461 Sum_probs=47.2
Q ss_pred ccCcccccccccccCC----cccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCccccc
Q 002710 832 CKAILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 832 ~~~~l~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
....+.|||++..|.. +++.||||+||..|+...- ....||.|+.+|...||++|.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEec
Confidence 3556899999998854 5667999999999999882 356799999999999998874
No 91
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.34 E-value=2.6e-06 Score=99.98 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 002710 795 ERKKLEEELMEVNNKVAELTSETG 818 (890)
Q Consensus 795 ~~~~l~~e~~~l~~~l~~l~~~~~ 818 (890)
++..++.++..+..++.+|+....
T Consensus 607 e~~~l~~~~~~~ekr~~RLkevf~ 630 (722)
T PF05557_consen 607 EIAELKAELASAEKRNQRLKEVFK 630 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666667777766655
No 92
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.32 E-value=2.3e-06 Score=100.51 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=0.0
Q ss_pred ccchhHhhhhhHHHHHHHHHHH
Q 002710 47 SVDSAVLQYQNQKLVQQLDSQK 68 (890)
Q Consensus 47 ~~~~~~l~~~~~~l~~~l~~~~ 68 (890)
..+...++++...|...+..++
T Consensus 60 ~~e~~~~k~~l~~Le~e~~~~~ 81 (722)
T PF05557_consen 60 RAELIELKAQLNQLEYELEQLK 81 (722)
T ss_dssp ----------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555544444433
No 93
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.28 E-value=2.5e-07 Score=91.51 Aligned_cols=48 Identities=27% Similarity=0.699 Sum_probs=42.9
Q ss_pred cccccccccCCcccccCCCcccHHHHHHHhccC-CCCccCCCcCcCCCC
Q 002710 837 KCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR-HRKCPGCGTAFGQSD 884 (890)
Q Consensus 837 ~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~-~~~CP~C~~~~~~~d 884 (890)
-|.||.++-+++.|-||||..|..|+-.|..+. +-.||+||..+....
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 599999999999999999999999999998654 567999999887655
No 94
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.28 E-value=0.016 Score=65.73 Aligned_cols=38 Identities=5% Similarity=0.180 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 371 NLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEI 408 (890)
Q Consensus 371 ~~l~~~~~~~~~~l~~~~~~~~~l~~e~~~l~~~~~~~ 408 (890)
..+..+|..++.++...+..+.....+.+.+.....++
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~ 67 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQEL 67 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666665555544333
No 95
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.8e-07 Score=87.15 Aligned_cols=48 Identities=27% Similarity=0.554 Sum_probs=41.7
Q ss_pred cccccccccccCC---cccccCCCcccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 835 ILKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 835 ~l~C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
-..|.||+..|.. .+++||-|.|--+|+.+|+-....+||+||.++-+
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3789999998844 68889999999999999998677789999998753
No 96
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.5e-07 Score=100.11 Aligned_cols=47 Identities=32% Similarity=0.740 Sum_probs=41.8
Q ss_pred cccCcccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCc
Q 002710 831 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 878 (890)
Q Consensus 831 ~~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~ 878 (890)
.+...+.|+||++.|..|++++|||+||..|+..++. ....||.|+.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 3445699999999999999999999999999999988 5678999994
No 97
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.22 E-value=0.021 Score=64.88 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002710 774 EYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSET 817 (890)
Q Consensus 774 ~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~ 817 (890)
-+......+..+...+.........+...+......+..|....
T Consensus 445 ~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t 488 (560)
T PF06160_consen 445 YFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKT 488 (560)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444433
No 98
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6e-07 Score=93.53 Aligned_cols=49 Identities=31% Similarity=0.734 Sum_probs=44.4
Q ss_pred cCcccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 833 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 833 ~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
...+.|.||+..+..||++||||+||..|+.+.++ ....||.|+.+|..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 66799999999999999999999999999999777 67779999998874
No 99
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.19 E-value=7.4e-07 Score=64.85 Aligned_cols=45 Identities=27% Similarity=0.524 Sum_probs=31.3
Q ss_pred cCcccccccccccCCcccc-cCCCcccHHHHHHHhc-cCCCCccCCC
Q 002710 833 KAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLE-IRHRKCPGCG 877 (890)
Q Consensus 833 ~~~l~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~-~~~~~CP~C~ 877 (890)
...+.|||....|.+||.. .|||+|....|..++. .+...||+-|
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 3458999999999999885 9999999999999994 3455699944
No 100
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=5.6e-07 Score=89.56 Aligned_cols=48 Identities=23% Similarity=0.665 Sum_probs=42.2
Q ss_pred CcccccccccccCCcccccCCCcc-cHHHHHHHhccCCCCccCCCcCcCC
Q 002710 834 AILKCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 834 ~~l~C~iC~~~~~~~~~~~CgH~f-C~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
+--.|-||+...++++++||.|+- |..|.+..- ...++||+||.+|..
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 346899999999999999999996 999998874 348889999999975
No 101
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=0.029 Score=64.57 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHh
Q 002710 799 LEEELMEVNNKVAEL 813 (890)
Q Consensus 799 l~~e~~~l~~~l~~l 813 (890)
|+..++.....++++
T Consensus 934 L~~kl~e~~~~l~~~ 948 (1141)
T KOG0018|consen 934 LQQKLEEKQSVLNRI 948 (1141)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555666666665555
No 102
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.16 E-value=1e-06 Score=68.39 Aligned_cols=47 Identities=30% Similarity=0.549 Sum_probs=35.4
Q ss_pred ccccccccccCC------------c-ccccCCCcccHHHHHHHhccC--CCCccCCCcCcCC
Q 002710 836 LKCGVCFDRPKE------------V-VITKCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQ 882 (890)
Q Consensus 836 l~C~iC~~~~~~------------~-~~~~CgH~fC~~C~~~~~~~~--~~~CP~C~~~~~~ 882 (890)
-.|+||...|.. | |.-.|||.|-..||..|+.+. ...||+||.+|..
T Consensus 22 d~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 22 DVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 456666665532 3 333899999999999999963 4569999998864
No 103
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=6.4e-07 Score=100.80 Aligned_cols=49 Identities=24% Similarity=0.561 Sum_probs=43.0
Q ss_pred cccccccccccCC-----cccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCC
Q 002710 835 ILKCGVCFDRPKE-----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 835 ~l~C~iC~~~~~~-----~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 884 (890)
...|+||.+.... |..++|||+||..|+..|++ +...||+||..+..+.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-r~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-RQQTCPTCRTVLYDYV 344 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHH-HhCcCCcchhhhhccc
Confidence 4689999999877 88999999999999999999 7888999999665544
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.15 E-value=0.0023 Score=61.87 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=14.5
Q ss_pred ccccccccccCC----cccccCCC-cccHHHHH
Q 002710 836 LKCGVCFDRPKE----VVITKCFH-LFCNPCIQ 863 (890)
Q Consensus 836 l~C~iC~~~~~~----~~~~~CgH-~fC~~C~~ 863 (890)
-.|+=|+-.... -|.. =++ +||.+|-.
T Consensus 198 ~~C~GC~m~l~~~~~~~V~~-~d~iv~CP~CgR 229 (239)
T COG1579 198 RVCGGCHMKLPSQTLSKVRK-KDEIVFCPYCGR 229 (239)
T ss_pred CcccCCeeeecHHHHHHHhc-CCCCccCCccch
Confidence 467778755433 2222 233 36888854
No 105
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.15 E-value=0.021 Score=61.89 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 002710 567 KESERRAHSQAEVLKNAL 584 (890)
Q Consensus 567 ~~~~~~~~~~~~~l~~~L 584 (890)
......+-.+|.+|...|
T Consensus 579 r~~~~~lvqqv~dLR~~L 596 (961)
T KOG4673|consen 579 RERESMLVQQVEDLRQTL 596 (961)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555666665554
No 106
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.6e-07 Score=86.78 Aligned_cols=47 Identities=30% Similarity=0.747 Sum_probs=39.1
Q ss_pred ccccccccccCCcccccCCCcc-cHHHHHHHhccCCCCccCCCcCcCCCCccccc
Q 002710 836 LKCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~f-C~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
.-|.||++.+.+.+.++|||+. |..|-.. ...||+||..+.. +.+||
T Consensus 301 ~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~r--vvrif 348 (350)
T KOG4275|consen 301 RLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYIVR--VVRIF 348 (350)
T ss_pred HHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHHHH--HHhhh
Confidence 5699999999999999999997 9999764 4479999988765 44444
No 107
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.07 E-value=0.038 Score=62.03 Aligned_cols=84 Identities=13% Similarity=0.251 Sum_probs=39.9
Q ss_pred HHHhhhhhhhhhhhHHhHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcch--HHHHHHHHHHHHHH
Q 002710 499 EKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRD--LMEIKESERRAHSQ 576 (890)
Q Consensus 499 ~~~~~l~~~l~~l~~~~~~l~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~--i~~l~~~~~~~~~~ 576 (890)
.++.+....++.++-+..-.+.....+..++..++..++.+...+.-|+..+..-.+....... +..++..-..+...
T Consensus 304 ~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKda 383 (1243)
T KOG0971|consen 304 EEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDA 383 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHH
Confidence 3344444444444433333334444555556666666666666666666655554443322222 33444444444444
Q ss_pred HHHHHh
Q 002710 577 AEVLKN 582 (890)
Q Consensus 577 ~~~l~~ 582 (890)
+-.|..
T Consensus 384 lVrLRD 389 (1243)
T KOG0971|consen 384 LVRLRD 389 (1243)
T ss_pred HHHHHh
Confidence 444433
No 108
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=2.3e-06 Score=79.22 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=46.8
Q ss_pred CcccccccccccCC----cccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcccc
Q 002710 834 AILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 888 (890)
Q Consensus 834 ~~l~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~ 888 (890)
..+.||||.+.+.+ .|+.||||+||..|+...+. ...-||+|+.+....||+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEee
Confidence 34889999999988 35559999999999999987 56679999999999998765
No 109
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.9e-06 Score=87.07 Aligned_cols=47 Identities=26% Similarity=0.568 Sum_probs=40.0
Q ss_pred ccccccccccCC---cccccCCCcccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 836 LKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 836 l~C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
..|.||++.|.. .++|||+|.|--.||+.|+....+.||+|...+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 589999999966 77899999999999999999554449999986653
No 110
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.04 E-value=0.0086 Score=68.68 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002710 747 LETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETG 818 (890)
Q Consensus 747 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~~ 818 (890)
.+.+-..+..++.+...++..+..-.+---.|-..+.+...+++.....+..-+.+|..|+.++..+-+...
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p 660 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMP 660 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333444444444444444444433333333444555555666666666666777778888888777766654
No 111
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.03 E-value=1.2e-06 Score=85.92 Aligned_cols=55 Identities=27% Similarity=0.724 Sum_probs=45.8
Q ss_pred HhcccCcccccccccccCCc-ccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCC
Q 002710 829 IKDCKAILKCGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 829 ~~~~~~~l~C~iC~~~~~~~-~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 884 (890)
+..+...+.|.+|...|.++ -++-|.|+||.+||-.++.. ...||+|+..++...
T Consensus 9 ~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 9 LTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTH 64 (331)
T ss_pred hhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCcc
Confidence 34455568999999999885 44589999999999999995 888999999888763
No 112
>PRK11637 AmiB activator; Provisional
Probab=98.02 E-value=0.018 Score=63.59 Aligned_cols=6 Identities=17% Similarity=-0.308 Sum_probs=2.7
Q ss_pred cccccc
Q 002710 835 ILKCGV 840 (890)
Q Consensus 835 ~l~C~i 840 (890)
.+.+|+
T Consensus 306 ~~~~Pv 311 (428)
T PRK11637 306 QAFWPV 311 (428)
T ss_pred CCccCC
Confidence 344444
No 113
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.00 E-value=0.0094 Score=69.04 Aligned_cols=11 Identities=9% Similarity=-0.049 Sum_probs=6.3
Q ss_pred CCCccCCCcCc
Q 002710 870 HRKCPGCGTAF 880 (890)
Q Consensus 870 ~~~CP~C~~~~ 880 (890)
.+...++..||
T Consensus 496 ~~~~lilDEp~ 506 (562)
T PHA02562 496 DTNLLILDEVF 506 (562)
T ss_pred CcCeEEEeccc
Confidence 34455566666
No 114
>PRK11637 AmiB activator; Provisional
Probab=97.97 E-value=0.018 Score=63.56 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 600 EAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVA 671 (890)
Q Consensus 600 ~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~ 671 (890)
+..+..++..+..++..++.++..+..++..+...+......+..+..++..+...+..++..+..+...+.
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333333333333333333333333333333333333333333333333333333
No 115
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.97 E-value=0.06 Score=60.92 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 656 FEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKAC 729 (890)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~ 729 (890)
+...-.++..+..++.+++..+..+..+...+...+..-..-...+...+..+...+..+...+..-...+..+
T Consensus 155 ~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~L 228 (617)
T PF15070_consen 155 ASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSL 228 (617)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444555666777777777766666666555555554444444444444444444444444443333333333
No 116
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.95 E-value=3.3e-06 Score=80.35 Aligned_cols=43 Identities=37% Similarity=0.756 Sum_probs=38.9
Q ss_pred ccccccccccCCcccc-cCCCcccHHHHHHHhccCCCCccCCCc
Q 002710 836 LKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGT 878 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~CP~C~~ 878 (890)
|.|+.|+...++|+.+ -|||+||..||...+-....+||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 8999999999999988 689999999999887767889999976
No 117
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.91 E-value=0.057 Score=58.71 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 002710 173 SSARELMKFIEEVIDAQRVKTKSIAEAFHE 202 (890)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~ 202 (890)
+.+...+..+...-+.+..++..+...+..
T Consensus 412 a~lEkKvqa~~kERDalr~e~kslk~ela~ 441 (961)
T KOG4673|consen 412 ATLEKKVQALTKERDALRREQKSLKKELAA 441 (961)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333344444333344444444444444444
No 118
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.91 E-value=0.014 Score=67.53 Aligned_cols=16 Identities=0% Similarity=0.117 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 002710 567 KESERRAHSQAEVLKN 582 (890)
Q Consensus 567 ~~~~~~~~~~~~~l~~ 582 (890)
...+..+..++..+..
T Consensus 180 ~~~i~~l~~~i~~l~~ 195 (562)
T PHA02562 180 NQQIQTLDMKIDHIQQ 195 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 119
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.90 E-value=0.031 Score=64.31 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 002710 527 AEIKSLKALIEKLQKDKLESQIMLDMYGQ 555 (890)
Q Consensus 527 ~el~~l~~~~~~l~~~~~~l~~~~~~~~~ 555 (890)
.++..|+.++...+..-.+|...+..+..
T Consensus 425 ~dvkkLraeLq~~Rq~E~ELRsqis~l~~ 453 (697)
T PF09726_consen 425 ADVKKLRAELQSSRQSEQELRSQISSLTN 453 (697)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 44444444444444444455555544443
No 120
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.90 E-value=2.2e-06 Score=92.42 Aligned_cols=49 Identities=22% Similarity=0.524 Sum_probs=39.8
Q ss_pred cccccccccCCccc---ccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcc
Q 002710 837 KCGVCFDRPKEVVI---TKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVR 886 (890)
Q Consensus 837 ~C~iC~~~~~~~~~---~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~ 886 (890)
.||+|...|.+..+ .+|||.||..|+..|.. ..-.||+||..|+.-+|.
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhheeeee
Confidence 68888888877322 38999999999999977 455799999999987654
No 121
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.88 E-value=9.5e-06 Score=95.07 Aligned_cols=26 Identities=4% Similarity=-0.061 Sum_probs=14.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002710 161 LQYVEEALASRHSSARELMKFIEEVI 186 (890)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~l~~~~~~~ 186 (890)
.+.|...+......+...+...+..+
T Consensus 128 ke~yI~~I~~Ld~~~Q~~im~~Iqev 153 (713)
T PF05622_consen 128 KEEYIQRIMELDESTQHAIMEAIQEV 153 (713)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45666666666666666665544433
No 122
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.83 E-value=0.024 Score=51.76 Aligned_cols=114 Identities=14% Similarity=0.224 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 690 VQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVT 769 (890)
Q Consensus 690 ~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 769 (890)
.+...-..+.-++.++.......+.....+..+...++.+..++..+...-..+....+.....+..+...+.+....-.
T Consensus 82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE 161 (205)
T KOG1003|consen 82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAE 161 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHH
Confidence 34444444444455555555555555555555555555555555555555445555555555555555555554444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 770 SSDKEYEQIQRKTEDMRKELENERNERKKLEEEL 803 (890)
Q Consensus 770 ~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~ 803 (890)
...+.+..+...+..+...+.........+...+
T Consensus 162 ~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eL 195 (205)
T KOG1003|consen 162 FAERRVAKLEKERDDLEEKLEEAKEKYEEAKKEL 195 (205)
T ss_pred HHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHH
Confidence 4445555555555554444444433333333333
No 123
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.032 Score=62.03 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002710 781 KTEDMRKELENERNERKKLEEELMEVNNKVAELTSET 817 (890)
Q Consensus 781 ~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~ 817 (890)
++.....+.+............+..++..+..|..--
T Consensus 905 ki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~ 941 (970)
T KOG0946|consen 905 KIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPV 941 (970)
T ss_pred cccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence 3334444444444444555555666666666655433
No 124
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.81 E-value=0.083 Score=59.54 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHh
Q 002710 492 DEALSLREKAVSLKVSLSAKTNEQ 515 (890)
Q Consensus 492 ~~l~~l~~~~~~l~~~l~~l~~~~ 515 (890)
.++..+...+..+...+..+..++
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~ 351 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEI 351 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333
No 125
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.087 Score=56.80 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcchHHHHHHH
Q 002710 490 TADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKES 569 (890)
Q Consensus 490 ~~~~l~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~ 569 (890)
+......++.++..+++-+..+.+........+..+..++.....+++.++.....|+..++.- ...+.++..+..+
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q---~iS~~dve~mn~E 340 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ---GISGEDVERMNLE 340 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 3344444555555555544444544555566666677777777777777777777777776533 4555667677777
Q ss_pred HHHHHHHHHHHHhhhhhhhH
Q 002710 570 ERRAHSQAEVLKNALDEHSL 589 (890)
Q Consensus 570 ~~~~~~~~~~l~~~L~~~~~ 589 (890)
...+...+..+..+++....
T Consensus 341 r~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 341 RNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777775554444
No 126
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.77 E-value=0.059 Score=54.48 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 656 FEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAK 716 (890)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~ 716 (890)
+......+..+..+...+..++..+..+...+.....++....+.+..-...+....-.+.
T Consensus 132 ~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~ 192 (499)
T COG4372 132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLK 192 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444444444444444433333333333333
No 127
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.76 E-value=0.054 Score=53.83 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002710 599 AEAACQQRLSAAEAEIIELVAKLDAS 624 (890)
Q Consensus 599 ~~~~l~~~l~~l~~el~~l~~~~~~~ 624 (890)
....+..++..+......+...+..+
T Consensus 63 ~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 63 ERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 128
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.75 E-value=9.6e-06 Score=83.67 Aligned_cols=52 Identities=29% Similarity=0.750 Sum_probs=44.6
Q ss_pred cCcccccccccccCCcccccCCCcccHHHHHHHhc----cCCCCccCCCcCcCCCC
Q 002710 833 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLE----IRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 833 ~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~----~~~~~CP~C~~~~~~~d 884 (890)
.....|.+|+++-.+++...|.|+||.-|+..++. ..+..||+|..+++..+
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 45578999999999999999999999999977765 35577999999988654
No 129
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.067 Score=59.66 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=18.5
Q ss_pred hhHHhHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 002710 511 KTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYG 554 (890)
Q Consensus 511 l~~~~~~l~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~~~~~~ 554 (890)
+...+..+......+..+.+.+..++.........++...+.++
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk 712 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLK 712 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444444333
No 130
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.73 E-value=1.4e-05 Score=85.38 Aligned_cols=54 Identities=31% Similarity=0.682 Sum_probs=47.0
Q ss_pred ccCcccccccccccCCcccc-cCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcc
Q 002710 832 CKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVR 886 (890)
Q Consensus 832 ~~~~l~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~ 886 (890)
+...+.|++|+..+.+|+.+ .|||.||..|+..|... ...||.|+.....+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEEL 72 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhcc
Confidence 45669999999999999995 99999999999999885 88899998877766544
No 131
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.73 E-value=0.037 Score=50.88 Aligned_cols=10 Identities=10% Similarity=-0.051 Sum_probs=3.6
Q ss_pred HHHHHHHHHh
Q 002710 674 DDLNIKLVSE 683 (890)
Q Consensus 674 ~~~i~~l~~e 683 (890)
+.++.++...
T Consensus 66 ~eEledLk~~ 75 (193)
T PF14662_consen 66 EEELEDLKTL 75 (193)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 132
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.69 E-value=0.071 Score=53.02 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002710 602 ACQQRLSAAEAEIIELVAKLDASERDVMELE 632 (890)
Q Consensus 602 ~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~ 632 (890)
.++.+...+...+..++.+.+.+..++..+.
T Consensus 45 eln~kvrE~~e~~~elr~~rdeineev~elK 75 (294)
T COG1340 45 ELNAKVRELREKAQELREERDEINEEVQELK 75 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 133
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=97.64 E-value=8.2e-06 Score=75.21 Aligned_cols=49 Identities=31% Similarity=0.793 Sum_probs=38.7
Q ss_pred cccccccc-ccCCc--ccc--c-CCCcccHHHHHHHhccCCCCcc--CCCcCcCCCC
Q 002710 836 LKCGVCFD-RPKEV--VIT--K-CFHLFCNPCIQRNLEIRHRKCP--GCGTAFGQSD 884 (890)
Q Consensus 836 l~C~iC~~-~~~~~--~~~--~-CgH~fC~~C~~~~~~~~~~~CP--~C~~~~~~~d 884 (890)
-.||||.. +|-+| +++ | |+|..|.+|+++.+..+...|| .|++.+....
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~k 67 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIK 67 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhc
Confidence 47999984 56554 222 6 9999999999999998888999 8987665443
No 134
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=0.17 Score=56.01 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 002710 795 ERKKLEEELMEVNNKVAELTSETG 818 (890)
Q Consensus 795 ~~~~l~~e~~~l~~~l~~l~~~~~ 818 (890)
++..++.++..+..+..+++....
T Consensus 601 ev~qlk~ev~s~ekr~~rlk~vF~ 624 (716)
T KOG4593|consen 601 EVAQLKKEVESAEKRNQRLKEVFA 624 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666666655544
No 135
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.63 E-value=0.26 Score=57.97 Aligned_cols=7 Identities=43% Similarity=0.971 Sum_probs=3.3
Q ss_pred ccccccc
Q 002710 835 ILKCGVC 841 (890)
Q Consensus 835 ~l~C~iC 841 (890)
++.|..|
T Consensus 915 e~~~k~~ 921 (1317)
T KOG0612|consen 915 ELTCKDC 921 (1317)
T ss_pred HHHHHHH
Confidence 3455544
No 136
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=1.4e-05 Score=79.93 Aligned_cols=49 Identities=33% Similarity=0.643 Sum_probs=37.1
Q ss_pred CcccccccccccCCcccccCCCccc-HHHHHHHhccCCCCccCCCcCcCCCCccccc
Q 002710 834 AILKCGVCFDRPKEVVITKCFHLFC-NPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 834 ~~l~C~iC~~~~~~~~~~~CgH~fC-~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
...-|.||.+.+++.+.+||||+.| -.|... .+.||.||..+.. +.++|
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~-----l~~CPvCR~rI~~--~~k~y 353 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKH-----LPQCPVCRQRIRL--VRKRY 353 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEEchHHHhh-----CCCCchhHHHHHH--HHHHh
Confidence 3468999999999999999999985 334432 3459999998876 44444
No 137
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.56 E-value=0.12 Score=52.37 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 002710 571 RRAHSQAEVLKN 582 (890)
Q Consensus 571 ~~~~~~~~~l~~ 582 (890)
.++..++..+..
T Consensus 77 ddi~~qlr~~rt 88 (499)
T COG4372 77 DDIRPQLRALRT 88 (499)
T ss_pred HHHHHHHHHHHH
Confidence 333344444444
No 138
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=4.4e-05 Score=78.05 Aligned_cols=48 Identities=27% Similarity=0.698 Sum_probs=39.1
Q ss_pred cccccccccccCCcc-----c---ccCCCcccHHHHHHHhccCC------CCccCCCcCcCC
Q 002710 835 ILKCGVCFDRPKEVV-----I---TKCFHLFCNPCIQRNLEIRH------RKCPGCGTAFGQ 882 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~-----~---~~CgH~fC~~C~~~~~~~~~------~~CP~C~~~~~~ 882 (890)
...|.||++....++ . .+|-|.||..||..|-..++ +.||+||.+...
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 478999999887755 2 57999999999999975444 679999987764
No 139
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=2.5e-05 Score=57.84 Aligned_cols=35 Identities=26% Similarity=0.612 Sum_probs=28.4
Q ss_pred cccc-cCCCcccHHHHHHHhccCCC--CccCCCcCcCC
Q 002710 848 VVIT-KCFHLFCNPCIQRNLEIRHR--KCPGCGTAFGQ 882 (890)
Q Consensus 848 ~~~~-~CgH~fC~~C~~~~~~~~~~--~CP~C~~~~~~ 882 (890)
|.++ .|-|.|=..||.+|+.+.+. .||+||..|..
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 4444 89999999999999986544 59999998864
No 140
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.48 E-value=9.9e-05 Score=50.58 Aligned_cols=44 Identities=27% Similarity=0.665 Sum_probs=23.2
Q ss_pred ccccccccCC--cccc--cCCCcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 838 CGVCFDRPKE--VVIT--KCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 838 C~iC~~~~~~--~~~~--~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
||+|.+.... ..++ +||+.+|..|...........||.||.++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 7889887633 2333 799999999999998767889999999863
No 141
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.46 E-value=0.14 Score=50.65 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=21.5
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 676 LNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAE 723 (890)
Q Consensus 676 ~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~ 723 (890)
.+..+......++..+..++.+.--+..++..+..........+-.+.
T Consensus 208 kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ 255 (305)
T PF14915_consen 208 KVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQ 255 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333444444444444455555555555555444444443333333333
No 142
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.46 E-value=2.7e-05 Score=91.31 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCCCccCCCcCcCC
Q 002710 869 RHRKCPGCGTAFGQ 882 (890)
Q Consensus 869 ~~~~CP~C~~~~~~ 882 (890)
++|-||.-|.+...
T Consensus 692 rqR~~~~~r~~~~~ 705 (713)
T PF05622_consen 692 RQRQATNARRGPSG 705 (713)
T ss_dssp --------------
T ss_pred HhhccccCCCCCCC
Confidence 66667755555443
No 143
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.44 E-value=0.29 Score=53.82 Aligned_cols=53 Identities=11% Similarity=0.185 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 002710 639 DREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQ 691 (890)
Q Consensus 639 ~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~ 691 (890)
...+..+...++.....+..++..+..+..++..-...+..+...+..+...+
T Consensus 593 enk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~ 645 (786)
T PF05483_consen 593 ENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEEL 645 (786)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433333333333333333333
No 144
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.32 Score=54.01 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 002710 640 REAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLL 695 (890)
Q Consensus 640 ~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~ 695 (890)
-.+.....+++.+....+.+...+.++..++.+++..+..+..+...+...+...+
T Consensus 465 ~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q 520 (1118)
T KOG1029|consen 465 VDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ 520 (1118)
T ss_pred eccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 33344444555555555555555566666666666666666655555555544433
No 145
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=6.3e-05 Score=73.76 Aligned_cols=46 Identities=28% Similarity=0.614 Sum_probs=41.5
Q ss_pred cccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 835 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
.-.||||.-.+-+.|+.||||.-|+.||...+. ....|-+|...+.
T Consensus 422 d~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 422 DNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred cccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 367999999999999999999999999999988 5677999998776
No 146
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.41 E-value=0.37 Score=54.48 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 673 RDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVE 713 (890)
Q Consensus 673 ~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~ 713 (890)
+..+|-.+...+.+-+.++..+..+...++.++..+...+.
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555444444433
No 147
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.41 E-value=0.052 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.255 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 002710 791 NERNERKKLEEELMEVNNKVAELT 814 (890)
Q Consensus 791 ~~~~~~~~l~~e~~~l~~~l~~l~ 814 (890)
.+...+..++.+...+..++..+.
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELE 135 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333334444444444444433
No 148
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=6.1e-05 Score=77.41 Aligned_cols=49 Identities=20% Similarity=0.601 Sum_probs=39.7
Q ss_pred Cccccccccccc-----------------CCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 834 AILKCGVCFDRP-----------------KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 834 ~~l~C~iC~~~~-----------------~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
...-|+||+... ++...+||-|+|-..|+..|.++..-.||+||.++-+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 346799999754 2255679999999999999999777789999998753
No 149
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=6.2e-05 Score=73.62 Aligned_cols=54 Identities=20% Similarity=0.393 Sum_probs=46.4
Q ss_pred cccccccccccCCcccc-cCCCcccHHHHHHHhccCCCCccCCCcCcCCCCccccc
Q 002710 835 ILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
.-.||||....-+|.++ .-|-+||.+|+-+++. ....||+-+.|....+++++|
T Consensus 300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred cccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchHHHHHHHh
Confidence 35899999988776555 6699999999999999 677899999999988887776
No 150
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00015 Score=73.59 Aligned_cols=60 Identities=18% Similarity=0.337 Sum_probs=50.7
Q ss_pred cccCcccccccccccCC---cccccCCCcccHHHHHHHhccCC--CCccCCCcCcCCCCcccccC
Q 002710 831 DCKAILKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRH--RKCPGCGTAFGQSDVRFVKI 890 (890)
Q Consensus 831 ~~~~~l~C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~~~--~~CP~C~~~~~~~d~~~~~~ 890 (890)
.+...+.|||=.+--.+ |+.+.|||+.|..-+.+....+. .|||-|-......|.++|||
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 45667899996543332 89999999999999999998766 78999999999999999997
No 151
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.25 E-value=0.00011 Score=75.13 Aligned_cols=47 Identities=23% Similarity=0.603 Sum_probs=38.0
Q ss_pred cCcccccccccccCC----cccccCCCcccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 833 KAILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 833 ~~~l~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
....+||||.++... .+++.|-|+|-.+|+..| ....||+||-.-.+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w---~~~scpvcR~~q~p 223 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW---WDSSCPVCRYCQSP 223 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhc---ccCcChhhhhhcCc
Confidence 345699999999866 356699999999999999 55679999976553
No 152
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.24 E-value=0.28 Score=49.40 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=14.8
Q ss_pred HHHHHHHhhhhhhH--HHHHHHHHhHhcccC
Q 002710 806 VNNKVAELTSETGE--AAIQKLQDEIKDCKA 834 (890)
Q Consensus 806 l~~~l~~l~~~~~~--~~~~~l~~e~~~~~~ 834 (890)
+..++..|+..+.. +.+...+++++.++.
T Consensus 274 L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 274 LQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444444444443 445556666666553
No 153
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.23 E-value=0.6 Score=53.09 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=8.1
Q ss_pred HHHHHHHHhHhcccC
Q 002710 820 AAIQKLQDEIKDCKA 834 (890)
Q Consensus 820 ~~~~~l~~e~~~~~~ 834 (890)
..+..+++.+..+..
T Consensus 596 ~~~q~lq~al~~ld~ 610 (980)
T KOG0980|consen 596 SGIQALQNALYQLDS 610 (980)
T ss_pred HHHHHHHHHHHhcCC
Confidence 345556666555543
No 154
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.19 E-value=0.37 Score=49.93 Aligned_cols=68 Identities=22% Similarity=0.229 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 739 EDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEV 806 (890)
Q Consensus 739 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l 806 (890)
-+..+..+++.....+..++.+...++.........+-.+..+......++..+...+.+|+.-+..+
T Consensus 238 ~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 238 VFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444433
No 155
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00032 Score=71.16 Aligned_cols=45 Identities=27% Similarity=0.780 Sum_probs=35.5
Q ss_pred cccccccccccCC---cccccCCCcccHHHHHHHhcc-------CCCCccCCCcC
Q 002710 835 ILKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEI-------RHRKCPGCGTA 879 (890)
Q Consensus 835 ~l~C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~-------~~~~CP~C~~~ 879 (890)
.+.|.||++.... .+.+||+|+||.+|...++.. ..-+||.|+.+
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 3789999999877 455699999999999999864 23359886644
No 156
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.11 E-value=0.00024 Score=53.25 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=28.2
Q ss_pred cCCCcccHHHHHHHhccCCCCccCCCcCcCCCC
Q 002710 852 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 852 ~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 884 (890)
.|-|.|=..||.+|+.+ ...||.|+.+|.-.|
T Consensus 53 ~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~~~ 84 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT-KGVCPLDRQTWVLAD 84 (88)
T ss_pred ecchHHHHHHHHHHHhh-CCCCCCCCceeEEec
Confidence 79999999999999997 556999999987544
No 157
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.08 E-value=0.84 Score=51.96 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 002710 527 AEIKSLKALIEKLQKDKLESQIMLD 551 (890)
Q Consensus 527 ~el~~l~~~~~~l~~~~~~l~~~~~ 551 (890)
.++...+..+..+......|+..+.
T Consensus 286 ~ELq~~qe~Lea~~qqNqqL~~qls 310 (617)
T PF15070_consen 286 QELQEAQEHLEALSQQNQQLQAQLS 310 (617)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333444444444444444444443
No 158
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.02 E-value=0.00023 Score=80.79 Aligned_cols=48 Identities=27% Similarity=0.736 Sum_probs=40.7
Q ss_pred ccccccccccCCcccccCCCcccHHHHHHHhccCCC-CccCCCcCcCCCC
Q 002710 836 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHR-KCPGCGTAFGQSD 884 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~-~CP~C~~~~~~~d 884 (890)
..|++|.+ ...+++++|||.||.+|+...+..... .||.|+..+...+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 888999999999999999999885444 5999997765443
No 159
>PRK09039 hypothetical protein; Validated
Probab=97.02 E-value=0.26 Score=52.02 Aligned_cols=7 Identities=14% Similarity=-0.553 Sum_probs=3.7
Q ss_pred cCCCccc
Q 002710 852 KCFHLFC 858 (890)
Q Consensus 852 ~CgH~fC 858 (890)
--||+=+
T Consensus 267 I~GHTD~ 273 (343)
T PRK09039 267 VDGHTDN 273 (343)
T ss_pred EEEecCC
Confidence 4566544
No 160
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.00038 Score=65.33 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=44.7
Q ss_pred cCcccccccccccCC----cccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcccc
Q 002710 833 KAILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 888 (890)
Q Consensus 833 ~~~l~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~ 888 (890)
+..+.|||-+-.+.. .++.+|||+|-..-++.. ....||.|+.+|...|++++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~dvIvl 165 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQEDDVIVL 165 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCcccccCeEee
Confidence 456899997766555 677799999999999887 57789999999999998875
No 161
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=0.8 Score=49.75 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 002710 566 IKESERRAHSQAEVLKNAL 584 (890)
Q Consensus 566 l~~~~~~~~~~~~~l~~~L 584 (890)
...++..+.....+|...+
T Consensus 306 kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554433
No 162
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00052 Score=66.40 Aligned_cols=35 Identities=26% Similarity=0.792 Sum_probs=31.5
Q ss_pred cCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcc
Q 002710 852 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVR 886 (890)
Q Consensus 852 ~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~ 886 (890)
+|||..|.+|++..+..+...||.|+.....+.++
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 89999999999999999999999999988776543
No 163
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.74 E-value=0.53 Score=48.08 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002710 654 QAFEDMQTQNQHLLQQVAERDDLNIKLVSES 684 (890)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~ 684 (890)
..+.+.+..+..+..++..+..++..+..++
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~ 102 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDI 102 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 3344444444444444444444444444433
No 164
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.69 E-value=0.2 Score=48.87 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=22.6
Q ss_pred ccHHHHHHHhccCCCCccCCCcCcCCCCc
Q 002710 857 FCNPCIQRNLEIRHRKCPGCGTAFGQSDV 885 (890)
Q Consensus 857 fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 885 (890)
.|.+|-+.++. ...-||.|...-.....
T Consensus 196 ~C~sC~qqIHR-NAPiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 196 TCQSCHQQIHR-NAPICPLCKAKSRSRNP 223 (230)
T ss_pred hhHhHHHHHhc-CCCCCcccccccccCCC
Confidence 49999999988 67889999887665543
No 165
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.63 E-value=2.7 Score=51.03 Aligned_cols=35 Identities=29% Similarity=0.185 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccC
Q 002710 522 CVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQE 556 (890)
Q Consensus 522 ~~~~~~el~~l~~~~~~l~~~~~~l~~~~~~~~~~ 556 (890)
+......+..+..++......+..|+.....|+.+
T Consensus 633 ~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~ 667 (1294)
T KOG0962|consen 633 IDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKF 667 (1294)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 34555666677777777777777777666666654
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.62 E-value=0.0009 Score=65.48 Aligned_cols=53 Identities=21% Similarity=0.556 Sum_probs=41.4
Q ss_pred ccccccccccC----CcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcccc
Q 002710 836 LKCGVCFDRPK----EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 888 (890)
Q Consensus 836 l~C~iC~~~~~----~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~ 888 (890)
-.||+|++.+. +-.-.+||-.+|..|....-..-+..||.||..+....|+.+
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~ 71 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYV 71 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEE
Confidence 34999998762 233348999999999888766566789999999998887654
No 167
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0034 Score=70.67 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=31.7
Q ss_pred HHHHhHhcccCcccccccccccCC-c-ccccCCCcccHHHHHHHhc
Q 002710 824 KLQDEIKDCKAILKCGVCFDRPKE-V-VITKCFHLFCNPCIQRNLE 867 (890)
Q Consensus 824 ~l~~e~~~~~~~l~C~iC~~~~~~-~-~~~~CgH~fC~~C~~~~~~ 867 (890)
.+..-..-+...-.|.+|+.++-. | ++.||||.|-..|+-....
T Consensus 806 ~l~~ry~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 806 KLRQRYRVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred HhhcceEEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 333344445555689999988643 4 6669999999999987754
No 168
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=96.59 E-value=0.007 Score=51.23 Aligned_cols=51 Identities=27% Similarity=0.598 Sum_probs=42.9
Q ss_pred CcccccccccccCCccccc----CCCcccHHHHHHHhcc--CCCCccCCCcCcCCCC
Q 002710 834 AILKCGVCFDRPKEVVITK----CFHLFCNPCIQRNLEI--RHRKCPGCGTAFGQSD 884 (890)
Q Consensus 834 ~~l~C~iC~~~~~~~~~~~----CgH~fC~~C~~~~~~~--~~~~CP~C~~~~~~~d 884 (890)
..+.|.||.+...+...++ ||-..|+.|.-..++. -.+.||.|...|..+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 5689999999988877663 9999999999998874 4567999999998754
No 169
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.55 E-value=0.0013 Score=66.66 Aligned_cols=45 Identities=33% Similarity=0.796 Sum_probs=36.3
Q ss_pred ccCcccccccccccCCcccccC--CCcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 832 CKAILKCGVCFDRPKEVVITKC--FHLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 832 ~~~~l~C~iC~~~~~~~~~~~C--gH~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
+...+.||||++.+.-|+ ..| ||+.|.+|.... ..+||+|+.+|+
T Consensus 45 ~~~lleCPvC~~~l~~Pi-~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPI-FQCDNGHLACSSCRTKV----SNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcccc-eecCCCcEehhhhhhhh----cccCCccccccc
Confidence 335689999998887664 445 899999998644 567999999998
No 170
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.55 E-value=0.95 Score=44.95 Aligned_cols=59 Identities=10% Similarity=0.180 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002710 693 FLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTK 751 (890)
Q Consensus 693 ~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (890)
.+.....-+..++......+..+..++......++...--++.+..++.+....+..++
T Consensus 141 ~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e 199 (305)
T PF14915_consen 141 NLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIE 199 (305)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433334444444444443333333
No 171
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=2 Score=48.11 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 603 CQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIK 679 (890)
Q Consensus 603 l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 679 (890)
++.++..|...+..|...+.+.+-.+......+.......+....++..+...|.+++..+..+.-+...+...+..
T Consensus 442 l~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq 518 (1118)
T KOG1029|consen 442 LQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQ 518 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33333333333333333333333333333334444444444444455555555555555544444444444444333
No 172
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.42 E-value=0.0013 Score=64.53 Aligned_cols=46 Identities=24% Similarity=0.540 Sum_probs=37.6
Q ss_pred cccccccccccCCcccccCCCcccHHHHHHHhc-cCCCCccCCCcCc
Q 002710 835 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLE-IRHRKCPGCGTAF 880 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~-~~~~~CP~C~~~~ 880 (890)
...|-||.....-.+++||||..|..|.-+.-. .....||+|+...
T Consensus 61 n~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 61 NMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 478999999988889999999999999876533 2455699999753
No 173
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.42 E-value=2.5 Score=48.30 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=15.7
Q ss_pred CCCCccCCCcCcCCCCccccc
Q 002710 869 RHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 869 ~~~~CP~C~~~~~~~d~~~~~ 889 (890)
+++--|+.+..|-..|+++++
T Consensus 1219 Phra~~~df~~f~t~d~kr~~ 1239 (1243)
T KOG0971|consen 1219 PHRAVPTDFATFPTSDFKRAK 1239 (1243)
T ss_pred CCccccCcccccccHHHHHHH
Confidence 455688888888888877654
No 174
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0014 Score=68.54 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=31.5
Q ss_pred cCCcccccCCCcccHHHHHHHhccCCCCccCCCcCc
Q 002710 845 PKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 880 (890)
Q Consensus 845 ~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 880 (890)
...|.+++|||+||..|+...+......||+||.+.
T Consensus 19 ~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 19 DHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred ccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 345788889999999999999997777899999994
No 175
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.40 E-value=3.9 Score=50.25 Aligned_cols=8 Identities=13% Similarity=-0.155 Sum_probs=3.5
Q ss_pred cccCCCcc
Q 002710 850 ITKCFHLF 857 (890)
Q Consensus 850 ~~~CgH~f 857 (890)
+++=|-+|
T Consensus 815 ~LSGGE~~ 822 (908)
T COG0419 815 TLSGGERF 822 (908)
T ss_pred cCCchHHH
Confidence 33444444
No 176
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.00088 Score=71.49 Aligned_cols=38 Identities=32% Similarity=0.725 Sum_probs=31.4
Q ss_pred CcccccccccccC----CcccccCCCcccHHHHHHHhccCCCCcc
Q 002710 834 AILKCGVCFDRPK----EVVITKCFHLFCNPCIQRNLEIRHRKCP 874 (890)
Q Consensus 834 ~~l~C~iC~~~~~----~~~~~~CgH~fC~~C~~~~~~~~~~~CP 874 (890)
..+.|+||...|. .||.+-|||+.|..|+... .+..||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l---yn~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL---YNASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH---hhccCC
Confidence 3478999977763 4999999999999999988 456788
No 177
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=96.38 E-value=0.0019 Score=66.70 Aligned_cols=37 Identities=30% Similarity=0.729 Sum_probs=29.9
Q ss_pred cCCCcccHHHHHHHhccCCC------------CccCCCcCcCCCCcccc
Q 002710 852 KCFHLFCNPCIQRNLEIRHR------------KCPGCGTAFGQSDVRFV 888 (890)
Q Consensus 852 ~CgH~fC~~C~~~~~~~~~~------------~CP~C~~~~~~~d~~~~ 888 (890)
.|.-++|.+|+-+|+.+|+. .||+||+.|-..||..|
T Consensus 310 ~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV~~v 358 (358)
T PF10272_consen 310 YCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDVCYV 358 (358)
T ss_pred cccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeeeecC
Confidence 45566799999999987542 39999999999998754
No 178
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0016 Score=62.30 Aligned_cols=41 Identities=32% Similarity=0.731 Sum_probs=34.6
Q ss_pred cccccccccCCcccccCCCc-ccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 837 KCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 837 ~C~iC~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
.|-.|...-..++++||.|. +|..|-.+ -+.||.|+.+...
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 39999999999999999998 59999763 3559999987765
No 179
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.30 E-value=0.001 Score=51.36 Aligned_cols=48 Identities=25% Similarity=0.595 Sum_probs=23.7
Q ss_pred cccccccccccC-C---c--ccc--cCCCcccHHHHHHHhcc----C------CCCccCCCcCcCC
Q 002710 835 ILKCGVCFDRPK-E---V--VIT--KCFHLFCNPCIQRNLEI----R------HRKCPGCGTAFGQ 882 (890)
Q Consensus 835 ~l~C~iC~~~~~-~---~--~~~--~CgH~fC~~C~~~~~~~----~------~~~CP~C~~~~~~ 882 (890)
.+.|+||+..+. . | +.. .||++|=..|+..|+.. + ...||.|+.++.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 367999998754 2 2 222 79999999999999863 2 1249999998864
No 180
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.25 E-value=0.0017 Score=72.51 Aligned_cols=48 Identities=19% Similarity=0.526 Sum_probs=37.3
Q ss_pred Cccccccccccc-------CCcccccCCCcccHHHHHHHhccCCC-CccCCCcCcC
Q 002710 834 AILKCGVCFDRP-------KEVVITKCFHLFCNPCIQRNLEIRHR-KCPGCGTAFG 881 (890)
Q Consensus 834 ~~l~C~iC~~~~-------~~~~~~~CgH~fC~~C~~~~~~~~~~-~CP~C~~~~~ 881 (890)
.--.|+||.... .+..+-.|.|-|-..|+-+|+.+.++ .||.||..|.
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 334799998754 23445579999999999999997655 5999997764
No 181
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=96.20 E-value=0.22 Score=41.39 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 646 IAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQ 725 (890)
Q Consensus 646 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~ 725 (890)
..++..+..++............++..++..+..+..++.+..+.+..+...++.+..++..+...+.....-+..+...
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~ 81 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKET 81 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45778888889999999999999999999999999999999999999999999999999999998888877777777664
Q ss_pred HHHHH
Q 002710 726 MKACL 730 (890)
Q Consensus 726 ~~~~~ 730 (890)
-..+.
T Consensus 82 E~~~~ 86 (96)
T PF08647_consen 82 EKEFV 86 (96)
T ss_pred HHHHH
Confidence 44433
No 182
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=96.18 E-value=0.0016 Score=71.95 Aligned_cols=53 Identities=28% Similarity=0.711 Sum_probs=43.0
Q ss_pred hHhcccCcccccccccccCCcccccCCCcccHHHHHHHhccCC--CCccCCCcCc
Q 002710 828 EIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRH--RKCPGCGTAF 880 (890)
Q Consensus 828 e~~~~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~--~~CP~C~~~~ 880 (890)
-+..+...+.|+||...+..|+.++|.|.||..|+...+.... ..||+|+...
T Consensus 14 vi~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 14 VINAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred HHHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 3445555699999999999999999999999999998877433 3599998543
No 183
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.002 Score=61.59 Aligned_cols=34 Identities=29% Similarity=0.803 Sum_probs=30.2
Q ss_pred cccccccccccCCcccccC----CCcccHHHHHHHhcc
Q 002710 835 ILKCGVCFDRPKEVVITKC----FHLFCNPCIQRNLEI 868 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~C----gH~fC~~C~~~~~~~ 868 (890)
-|.|++|++++-++....| .|-||+.|....++.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 3899999999999888877 599999999999874
No 184
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0012 Score=62.62 Aligned_cols=49 Identities=22% Similarity=0.455 Sum_probs=38.4
Q ss_pred ccccccccccCC----------cccccCCCcccHHHHHHHhccC-CCCccCCCcCcCCCC
Q 002710 836 LKCGVCFDRPKE----------VVITKCFHLFCNPCIQRNLEIR-HRKCPGCGTAFGQSD 884 (890)
Q Consensus 836 l~C~iC~~~~~~----------~~~~~CgH~fC~~C~~~~~~~~-~~~CP~C~~~~~~~d 884 (890)
--|.||...+.. ...+.|+|+|-..||..|.--+ ...||-|...+.-..
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 579999987743 5678999999999999997533 335999998776443
No 185
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.15 E-value=0.0035 Score=44.28 Aligned_cols=41 Identities=20% Similarity=0.643 Sum_probs=32.5
Q ss_pred ccccccc--ccCCcccccCC-----CcccHHHHHHHhccC-CCCccCCC
Q 002710 837 KCGVCFD--RPKEVVITKCF-----HLFCNPCIQRNLEIR-HRKCPGCG 877 (890)
Q Consensus 837 ~C~iC~~--~~~~~~~~~Cg-----H~fC~~C~~~~~~~~-~~~CP~C~ 877 (890)
.|-||++ ...++.+.||. |.|=.+|+..|+... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889997 44568888995 788899999999754 44699995
No 186
>PF13514 AAA_27: AAA domain
Probab=96.13 E-value=6 Score=49.82 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=31.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcc--hHHHHHHHHHHHHH
Q 002710 516 KRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPR--DLMEIKESERRAHS 575 (890)
Q Consensus 516 ~~l~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~i~~l~~~~~~~~~ 575 (890)
................+...+..+...+..+...+..+......|. .+...+......+.
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W~ 516 (1111)
T PF13514_consen 455 EAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEELAAARARRDAAWQ 516 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 3334444455555555666666666666666666666655443332 25555544444443
No 187
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.01 Score=66.30 Aligned_cols=75 Identities=19% Similarity=0.423 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHhcccCcccccccccccCCc-ccccCCCcccHHHHHHHhc
Q 002710 789 LENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEV-VITKCFHLFCNPCIQRNLE 867 (890)
Q Consensus 789 l~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~l~~e~~~~~~~l~C~iC~~~~~~~-~~~~CgH~fC~~C~~~~~~ 867 (890)
++.-+..++...+++...+.++..++.... .-..-+|+.|.-...-| |...|||.|-..|+.
T Consensus 807 I~qd~~~Ie~yk~~i~e~r~~l~~lr~sa~-------------i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---- 869 (933)
T KOG2114|consen 807 IEQDEDAIEVYKKDIEEKRQELETLRTSAQ-------------IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---- 869 (933)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhcccc-------------eeeeeeecccCCccccceeeeecccHHHHHhhc----
Confidence 334444555566666666666666554431 11225899999888776 556999999999997
Q ss_pred cCCCCccCCCcCc
Q 002710 868 IRHRKCPGCGTAF 880 (890)
Q Consensus 868 ~~~~~CP~C~~~~ 880 (890)
....+||.|....
T Consensus 870 ~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 870 DKEDKCPKCLPEL 882 (933)
T ss_pred cCcccCCccchhh
Confidence 2567899998743
No 188
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.12 E-value=2.6 Score=45.52 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 670 VAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSED 740 (890)
Q Consensus 670 ~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 740 (890)
+.++...+..+...+..-...+..++.....+...+.............+..+...-...+..+..+...+
T Consensus 356 L~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l 426 (570)
T COG4477 356 LKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKL 426 (570)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444444444444444444444444444333333343333333
No 189
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.08 E-value=0.95 Score=40.17 Aligned_cols=7 Identities=57% Similarity=0.582 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002710 695 LSEKQAL 701 (890)
Q Consensus 695 ~~~~~~l 701 (890)
..++..+
T Consensus 79 ~sEk~~L 85 (140)
T PF10473_consen 79 RSEKENL 85 (140)
T ss_pred HHHHHHH
Confidence 3333333
No 190
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.04 E-value=4.3 Score=47.39 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=27.5
Q ss_pred chHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002710 315 DLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNEL 358 (890)
Q Consensus 315 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l 358 (890)
.+..++.+...++..+..+..+|+..+.-+.....++..++..+
T Consensus 266 ~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 266 RLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666677766666666666666666655
No 191
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.00 E-value=2.1 Score=43.40 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 002710 636 KSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSF 693 (890)
Q Consensus 636 ~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~ 693 (890)
..+...+..+..++..........+.++..+..++..++.+...+..+...+.+.+..
T Consensus 209 ~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 209 SEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444443333333333
No 192
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.99 E-value=0.014 Score=50.41 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=24.6
Q ss_pred CcccccccccccCCc--ccccCCCcccHHHHH
Q 002710 834 AILKCGVCFDRPKEV--VITKCFHLFCNPCIQ 863 (890)
Q Consensus 834 ~~l~C~iC~~~~~~~--~~~~CgH~fC~~C~~ 863 (890)
..-.|++|+.++.+. ++.||||+|...|++
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 346799999998764 455999999999985
No 193
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.95 E-value=3.5 Score=45.53 Aligned_cols=149 Identities=18% Similarity=0.226 Sum_probs=76.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 592 RVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEA----MKSKDREAEAYIAEMETIGQAFEDMQTQNQHLL 667 (890)
Q Consensus 592 ~~~~~~~~~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~----~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~ 667 (890)
+...+.........++..++..+..+...+.....++..+... .....+++..+..+++.....+..++.++..+.
T Consensus 183 ~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~ 262 (629)
T KOG0963|consen 183 REAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLR 262 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666666766666666666666555554 444556666677777777777777777777666
Q ss_pred HHHHHHHHHHHHHH-HhHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 668 QQVAERDDLNIKLV-SESVKTKQVQSFLLSEKQALARQLQQIN----ALVESAKLRILHAEEQMKACLTEALRYNSED 740 (890)
Q Consensus 668 ~~~~~~~~~i~~l~-~e~~~~~~~~~~l~~~~~~l~~el~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 740 (890)
.++.........-. ..+......+......+..+..++..+. ..++.....|..++..+......++.+...+
T Consensus 263 ~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL 340 (629)
T KOG0963|consen 263 EQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKL 340 (629)
T ss_pred HHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655443322110 1122222223333333333333333222 2333444445555555554444444444443
No 194
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.94 E-value=4.4 Score=46.55 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=5.2
Q ss_pred CCCCccCCCC
Q 002710 7 LKEPEKKKPH 16 (890)
Q Consensus 7 ~~~~~~~~~~ 16 (890)
++|.-.||.|
T Consensus 17 ~~Et~~K~KH 26 (980)
T KOG0980|consen 17 KDETPPKRKH 26 (980)
T ss_pred cccCCCchhh
Confidence 4444555555
No 195
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.91 E-value=0.0043 Score=62.26 Aligned_cols=46 Identities=33% Similarity=0.652 Sum_probs=36.7
Q ss_pred ccccccccccCC----cccccCCCcccHHHHHHHhcc-CCCCccCCCcCcC
Q 002710 836 LKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEI-RHRKCPGCGTAFG 881 (890)
Q Consensus 836 l~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~-~~~~CP~C~~~~~ 881 (890)
+.|..|++.+.- --.+||.|+|-..|+..++.. ..+.||.||+..+
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 899999997632 455799999999999988864 4567999995444
No 196
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.86 E-value=2.9 Score=43.99 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=49.8
Q ss_pred HHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 002710 184 EVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLA 263 (890)
Q Consensus 184 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~ 263 (890)
..++.++...+.+...+.+.......+..+...+..+......+..-...+..+....-..+..+...+...+.++..++
T Consensus 271 ~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~ 350 (622)
T COG5185 271 TDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQ 350 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555443223344445556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHH
Q 002710 264 ETMAELEE 271 (890)
Q Consensus 264 ~~~~~le~ 271 (890)
...+.|..
T Consensus 351 ~~~d~L~~ 358 (622)
T COG5185 351 SNIDELHK 358 (622)
T ss_pred hhHHHHHH
Confidence 55555443
No 197
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.86 E-value=3.8 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 002710 609 AAEAEIIELVAKLDASERDVMEL 631 (890)
Q Consensus 609 ~l~~el~~l~~~~~~~~~~~~~l 631 (890)
.+..+...+..++..+...+..+
T Consensus 186 ~L~~~~~~~~~q~~~le~ki~~l 208 (629)
T KOG0963|consen 186 GLKDEEQNLQEQLEELEKKISSL 208 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444443333333
No 198
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.84 E-value=1.3 Score=39.60 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002710 757 AEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETG 818 (890)
Q Consensus 757 l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~~ 818 (890)
+..++..+...+..+..........+.... ..+......|+.++..+..++..|...|.
T Consensus 64 lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 64 LREELQELQQEINELKAEAESAKAELEESE---ASWEEQKEQLEKELSELEQRIEDLNEQNK 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444443333333322 23555667778888888888888887775
No 199
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.76 E-value=0.0045 Score=43.91 Aligned_cols=44 Identities=32% Similarity=0.640 Sum_probs=23.3
Q ss_pred ccccccccccCCcccc-cCCCcccHH---HHHHHhccCCCCccCCCcC
Q 002710 836 LKCGVCFDRPKEVVIT-KCFHLFCNP---CIQRNLEIRHRKCPGCGTA 879 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~-~CgH~fC~~---C~~~~~~~~~~~CP~C~~~ 879 (890)
+.||+.+.++.-|+.. .|-|.-|++ -+.....++.-+||+|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 7899999999998776 899998865 3444444455579999874
No 200
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=2.9 Score=43.09 Aligned_cols=76 Identities=16% Similarity=0.395 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHhcccCcccccccccccCC----ccccc--CCCcccH
Q 002710 786 RKELENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKE----VVITK--CFHLFCN 859 (890)
Q Consensus 786 ~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~l~~e~~~~~~~l~C~iC~~~~~~----~~~~~--CgH~fC~ 859 (890)
...+...+.-..++..++-.++..+..-.-... ..-.+|+.+++ .|+.|-..|.. |-.++ ||.+||.
T Consensus 426 ~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~-~le~ql~~~ve------~c~~~~aS~~slk~e~erl~qq~eqi~~~ 498 (542)
T KOG0993|consen 426 QQELDASEHVQEDLVKEIQSLQEQLEKERQSEQ-ELEWQLDDDVE------QCSNCDASFASLKVEPERLHQQCEQIFCM 498 (542)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH------HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 333344444445555555555555544333322 12222333332 47777766643 44444 9999999
Q ss_pred HHHHHHhcc
Q 002710 860 PCIQRNLEI 868 (890)
Q Consensus 860 ~C~~~~~~~ 868 (890)
.|.+..+..
T Consensus 499 ~~~Katvp~ 507 (542)
T KOG0993|consen 499 NCLKATVPS 507 (542)
T ss_pred hHHHhhccc
Confidence 999988753
No 201
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.68 E-value=0.0055 Score=41.11 Aligned_cols=43 Identities=30% Similarity=0.784 Sum_probs=26.0
Q ss_pred ccccccccccCCcccccCC-CcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 836 LKCGVCFDRPKEVVITKCF-HLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~Cg-H~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
+.|..|- |.+.-...|. |-.|..|+..++. ++..||+|+.++-
T Consensus 3 ~nCKsCW--f~~k~Li~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LP 46 (50)
T PF03854_consen 3 YNCKSCW--FANKGLIKCSDHYLCLNCLTLMLS-RSDRCPICGKPLP 46 (50)
T ss_dssp ----SS---S--SSEEE-SS-EEEHHHHHHT-S-SSSEETTTTEE--
T ss_pred ccChhhh--hcCCCeeeecchhHHHHHHHHHhc-cccCCCcccCcCc
Confidence 4566663 4555667898 7779999999888 7888999998764
No 202
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.0053 Score=61.77 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=28.3
Q ss_pred ccCCCcccHHHHHHHhccC--CCCccCCCcCcCCCCcc
Q 002710 851 TKCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQSDVR 886 (890)
Q Consensus 851 ~~CgH~fC~~C~~~~~~~~--~~~CP~C~~~~~~~d~~ 886 (890)
-.|||+|--.|+..|+.+. +|.||+|+...+...+.
T Consensus 24 ~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 24 GTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred cchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 3699999999999999853 36899999666655444
No 203
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.003 Score=64.08 Aligned_cols=42 Identities=29% Similarity=0.559 Sum_probs=33.9
Q ss_pred cccccCCCcccHHHHHHHhccCC-CCccCCCcCcCCCCccccc
Q 002710 848 VVITKCFHLFCNPCIQRNLEIRH-RKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 848 ~~~~~CgH~fC~~C~~~~~~~~~-~~CP~C~~~~~~~d~~~~~ 889 (890)
.|++.|||.|...||..|+-... ..||.|...-...++++.|
T Consensus 22 ~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 22 IVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred EeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 46779999999999999995211 1399999988888888876
No 204
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.57 E-value=0.87 Score=44.18 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=27.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002710 763 WLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSE 816 (890)
Q Consensus 763 ~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~ 816 (890)
.+......+.-++..-...+.-++.++......+.+++.++..++..+++....
T Consensus 78 ~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 78 NLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444444455555555555555566666666666666654443
No 205
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.49 E-value=2.9 Score=41.39 Aligned_cols=65 Identities=11% Similarity=0.247 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 600 EAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQ 664 (890)
Q Consensus 600 ~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~ 664 (890)
+..-...+..+......++.+++.+..++..+...+.....++.....++..+...|..+...+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555444444444444444444444444444444444333
No 206
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.0078 Score=55.50 Aligned_cols=47 Identities=21% Similarity=0.528 Sum_probs=38.8
Q ss_pred cccccccccc--CCcccccCCCcccHHHHHHHhcc-------CCCCccCCCcCcCC
Q 002710 836 LKCGVCFDRP--KEVVITKCFHLFCNPCIQRNLEI-------RHRKCPGCGTAFGQ 882 (890)
Q Consensus 836 l~C~iC~~~~--~~~~~~~CgH~fC~~C~~~~~~~-------~~~~CP~C~~~~~~ 882 (890)
-.|.+|.... .+++.+.|+|+|--.|++.|... ++..||.|..++-.
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 5899999886 55888899999999999999753 55679999887654
No 207
>PHA03096 p28-like protein; Provisional
Probab=95.41 E-value=0.0063 Score=61.17 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=31.6
Q ss_pred ccccccccccCC--------cccccCCCcccHHHHHHHhccCCC--CccCCCcC
Q 002710 836 LKCGVCFDRPKE--------VVITKCFHLFCNPCIQRNLEIRHR--KCPGCGTA 879 (890)
Q Consensus 836 l~C~iC~~~~~~--------~~~~~CgH~fC~~C~~~~~~~~~~--~CP~C~~~ 879 (890)
-.|+||+++... -.+..|-|.||..|+..|...+.. .||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 569999987533 344489999999999999764332 36666544
No 208
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.0057 Score=58.80 Aligned_cols=37 Identities=32% Similarity=0.724 Sum_probs=30.0
Q ss_pred cCCCcccHHHHHHHhccC------------CCCccCCCcCcCCCCcccc
Q 002710 852 KCFHLFCNPCIQRNLEIR------------HRKCPGCGTAFGQSDVRFV 888 (890)
Q Consensus 852 ~CgH~fC~~C~~~~~~~~------------~~~CP~C~~~~~~~d~~~~ 888 (890)
.|..++|.+|+-.|+-.| .-.||+||+.|-..||+.|
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~v 372 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHCV 372 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeEE
Confidence 477788999999998643 3359999999999998765
No 209
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.18 E-value=8.1 Score=44.62 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=49.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002710 166 EALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQI 245 (890)
Q Consensus 166 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~l 245 (890)
..+..+...+...+......+.....+++.+...... +......++.+...++.++.++...-..+-.++
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~----------~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQE----------LRKECEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455555555555555555555555555555444333 444444555555555555555544444444455
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHH
Q 002710 246 ENYISSHSVDQAEIQHLAETMAELEE 271 (890)
Q Consensus 246 ~~~~~~~~~~~~~l~~l~~~~~~le~ 271 (890)
..++..--.+++.+..++...-+++.
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~ 125 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEG 125 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 55555555555555555533334443
No 210
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.16 E-value=11 Score=46.16 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 002710 662 QNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQL 705 (890)
Q Consensus 662 ~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el 705 (890)
.+..+-..+.....++..+..+....++.+..+......+..++
T Consensus 266 ~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 266 INRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555554444444444
No 211
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.10 E-value=0.012 Score=57.45 Aligned_cols=60 Identities=17% Similarity=0.291 Sum_probs=47.7
Q ss_pred cccCcccccccccccCC---cccccCCCcccHHHHHHHhccC--CCCccCCCcCcCCCCcccccC
Q 002710 831 DCKAILKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQSDVRFVKI 890 (890)
Q Consensus 831 ~~~~~l~C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~~--~~~CP~C~~~~~~~d~~~~~~ 890 (890)
.+...+.|||-.+.-.+ |+++.|||+.-..-+.....++ ..+||-|-..-...++.+|||
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvrf 396 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVRF 396 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcccC
Confidence 45667899996554333 8999999999999888776643 447999999999999999986
No 212
>PRK11281 hypothetical protein; Provisional
Probab=95.07 E-value=12 Score=46.05 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 002710 663 NQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQL 705 (890)
Q Consensus 663 ~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el 705 (890)
+..+...+.....+++.+..+....++.+..+......+..++
T Consensus 287 N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 287 NLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444
No 213
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.97 E-value=4.3 Score=40.29 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=11.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002710 629 MELEEAMKSKDREAEAYIAEMETIGQAFED 658 (890)
Q Consensus 629 ~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~ 658 (890)
.++..++.....++..+..+|..+...|.+
T Consensus 69 ~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 69 DELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444433333
No 214
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.098 Score=54.64 Aligned_cols=44 Identities=27% Similarity=0.461 Sum_probs=36.8
Q ss_pred ccccccccccCC------ccccc--------CCCcccHHHHHHHhccCCCCccCCCcC
Q 002710 836 LKCGVCFDRPKE------VVITK--------CFHLFCNPCIQRNLEIRHRKCPGCGTA 879 (890)
Q Consensus 836 l~C~iC~~~~~~------~~~~~--------CgH~fC~~C~~~~~~~~~~~CP~C~~~ 879 (890)
..|.||...|.. |.++. |||+.|..|+...+.....+||+|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 468899888762 66666 999999999999988777899999974
No 215
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.95 E-value=0.016 Score=42.65 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=33.7
Q ss_pred cccccccccc----CCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCccc
Q 002710 836 LKCGVCFDRP----KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 887 (890)
Q Consensus 836 l~C~iC~~~~----~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~ 887 (890)
-.|.-|-.-+ .+..|..=-|+||..|....+. ..||.||..+....++|
T Consensus 6 PnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~---g~CPnCGGelv~RP~RP 58 (84)
T COG3813 6 PNCECCDRDLPPDSTDARICTFECTFCADCAENRLH---GLCPNCGGELVARPIRP 58 (84)
T ss_pred CCCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc---CcCCCCCchhhcCcCCh
Confidence 3566665432 1233333358999999997744 67999999999887776
No 216
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.90 E-value=11 Score=44.47 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=5.6
Q ss_pred CCcCcCCCC
Q 002710 876 CGTAFGQSD 884 (890)
Q Consensus 876 C~~~~~~~d 884 (890)
.-.||+.-|
T Consensus 580 iD~p~~~lD 588 (650)
T TIGR03185 580 IDTPLGRLD 588 (650)
T ss_pred EcCCccccC
Confidence 566666655
No 217
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.85 E-value=6.2 Score=41.62 Aligned_cols=15 Identities=7% Similarity=0.388 Sum_probs=8.6
Q ss_pred HHHHHHHHhHhcccC
Q 002710 820 AAIQKLQDEIKDCKA 834 (890)
Q Consensus 820 ~~~~~l~~e~~~~~~ 834 (890)
..+..|+..++.+..
T Consensus 276 ~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 276 SEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666555543
No 218
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.018 Score=54.21 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=31.4
Q ss_pred cccCcccccccccccCCcccccCCCcccHHHHHHHh
Q 002710 831 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNL 866 (890)
Q Consensus 831 ~~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~ 866 (890)
.+..--.|++|..++.+||++|=||+||..||-.++
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 344446899999999999999999999999998876
No 219
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.011 Score=57.47 Aligned_cols=42 Identities=24% Similarity=0.558 Sum_probs=30.8
Q ss_pred ccccccccccCCc-ccccCCCcccHHHHHHHhccCCCCccCCCcCc
Q 002710 836 LKCGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 880 (890)
Q Consensus 836 l~C~iC~~~~~~~-~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 880 (890)
..|--|...+.-. .++||-|+||..|.... ..+-||.|-..+
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICPLCDDRV 133 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcC---ccccCcCcccHH
Confidence 4677787665543 45699999999998654 345699997654
No 220
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.69 E-value=9.4 Score=42.92 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 593 VKAANEAEAACQQRLSAAEAEIIELV 618 (890)
Q Consensus 593 ~~~~~~~~~~l~~~l~~l~~el~~l~ 618 (890)
+..+++.+..+.....-+-.++.++.
T Consensus 386 lk~l~etl~~~~~~~~~~~tq~~Dl~ 411 (716)
T KOG4593|consen 386 LKELHETLARRLQKRALLLTQERDLN 411 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 221
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.017 Score=46.20 Aligned_cols=29 Identities=34% Similarity=0.582 Sum_probs=25.1
Q ss_pred cCCCcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 852 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 852 ~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
.|.|.|-+-||.+|+++|++ ||.|.....
T Consensus 80 ~CNHaFH~hCisrWlktr~v-CPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNV-CPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhcCc-CCCcCccee
Confidence 79999999999999997655 999987643
No 222
>PF13514 AAA_27: AAA domain
Probab=94.63 E-value=18 Score=45.77 Aligned_cols=6 Identities=0% Similarity=-0.579 Sum_probs=3.0
Q ss_pred cCCCcc
Q 002710 852 KCFHLF 857 (890)
Q Consensus 852 ~CgH~f 857 (890)
+-|..|
T Consensus 1016 ~~G~~~ 1021 (1111)
T PF13514_consen 1016 ADGERV 1021 (1111)
T ss_pred cCCeEe
Confidence 455554
No 223
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.59 E-value=12 Score=43.89 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 373 VNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEI 408 (890)
Q Consensus 373 l~~~~~~~~~~l~~~~~~~~~l~~e~~~l~~~~~~~ 408 (890)
....+......+..++......+..+....+.+..+
T Consensus 316 ~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~ 351 (1072)
T KOG0979|consen 316 IEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDA 351 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443333
No 224
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.56 E-value=0.023 Score=55.16 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=36.9
Q ss_pred cccccccccccCC-c--ccccCCCcccHHHHHHHhcc----------------------CCCCccCCCcCcCCC
Q 002710 835 ILKCGVCFDRPKE-V--VITKCFHLFCNPCIQRNLEI----------------------RHRKCPGCGTAFGQS 883 (890)
Q Consensus 835 ~l~C~iC~~~~~~-~--~~~~CgH~fC~~C~~~~~~~----------------------~~~~CP~C~~~~~~~ 883 (890)
...|.||+-.|.+ + ..++|.|-|-+.|+.+++.- -.-.||+||..++..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 3689999988855 3 45699999999999988742 111399999888753
No 225
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.48 E-value=0.092 Score=62.05 Aligned_cols=50 Identities=26% Similarity=0.516 Sum_probs=41.4
Q ss_pred cccCcccccccccccCC-cccccCCCcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 831 DCKAILKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 831 ~~~~~l~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
++-....|++|.+...+ ..+..|||.||..|...|+. ....||+|...++
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSIKG 1199 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhhhh
Confidence 33344699999999884 67779999999999999998 6888999986554
No 226
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.22 Score=50.62 Aligned_cols=46 Identities=22% Similarity=0.537 Sum_probs=37.8
Q ss_pred cccccccccCC----cccccCCCcccHHHHHHHhccCCCCccCCCcCcCCC
Q 002710 837 KCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 883 (890)
Q Consensus 837 ~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 883 (890)
.|+||+..++. ..-+.|||.+-..|+..|+.+ .++||.|+..+..+
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPKN 247 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhhh
Confidence 48999987655 455689999999999999996 78899999776543
No 227
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.33 E-value=14 Score=43.45 Aligned_cols=56 Identities=14% Similarity=0.292 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHhHhcccCccccc
Q 002710 784 DMRKELENERNERKKLEEELMEVNNKVAELTSETGE---AAIQKLQDEIKDCKAILKCG 839 (890)
Q Consensus 784 ~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~---~~~~~l~~e~~~~~~~l~C~ 839 (890)
....++..+..........++.+..++.......-. ..+..+.+.+..+-..+.|.
T Consensus 867 ~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~~mg~a 925 (1072)
T KOG0979|consen 867 VREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFSSMGCA 925 (1072)
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 333444444444445555555555555554444332 44555555555555555553
No 228
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.28 E-value=0.017 Score=63.50 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=32.8
Q ss_pred ccccccccccCC----cccc---cCCCcccHHHHHHHhcc----CCC-CccCCCcCcCC
Q 002710 836 LKCGVCFDRPKE----VVIT---KCFHLFCNPCIQRNLEI----RHR-KCPGCGTAFGQ 882 (890)
Q Consensus 836 l~C~iC~~~~~~----~~~~---~CgH~fC~~C~~~~~~~----~~~-~CP~C~~~~~~ 882 (890)
.+|++|...+.+ --+. .|||-||..||..|.+. +.. .||+|..+|..
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 466666665554 2333 49999999999999762 122 39999988863
No 229
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.11 E-value=0.017 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=17.7
Q ss_pred ccccccCCcccccCCCcccHHH
Q 002710 840 VCFDRPKEVVITKCFHLFCNPC 861 (890)
Q Consensus 840 iC~~~~~~~~~~~CgH~fC~~C 861 (890)
||...-+.++...|||.||..=
T Consensus 62 i~qs~~~rv~rcecghsf~d~r 83 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDYR 83 (165)
T ss_pred EEecccccEEEEeccccccChh
Confidence 5777777777779999999863
No 230
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=94.04 E-value=0.044 Score=41.56 Aligned_cols=47 Identities=26% Similarity=0.627 Sum_probs=21.9
Q ss_pred ccccccccccCC-------cccccCCCcccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 836 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 836 l~C~iC~~~~~~-------~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
-.|.||++...- +..--||-..|.+|..--.+-+...||.|+.+|..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 579999987522 23336888889999988877777789999988864
No 231
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.00 E-value=13 Score=41.87 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhhh
Q 002710 800 EEELMEVNNKVAELTSE 816 (890)
Q Consensus 800 ~~e~~~l~~~l~~l~~~ 816 (890)
..+...+..++..+...
T Consensus 638 ~~e~~rl~~rlqelerd 654 (739)
T PF07111_consen 638 KEEGQRLTQRLQELERD 654 (739)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444555555555443
No 232
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.033 Score=61.42 Aligned_cols=54 Identities=31% Similarity=0.771 Sum_probs=41.7
Q ss_pred cCcccccccccccCC-cccccCCCcccHHHHHHHhccC-----C--CCccC--CCcCcCCCCcc
Q 002710 833 KAILKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIR-----H--RKCPG--CGTAFGQSDVR 886 (890)
Q Consensus 833 ~~~l~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~~-----~--~~CP~--C~~~~~~~d~~ 886 (890)
.....|.||...+.. .+.+.|||.||..|...++.++ . .+||. |...++..+|.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~ 131 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVE 131 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceee
Confidence 455899999999986 7777999999999999988741 1 34665 77777766654
No 233
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.66 E-value=18 Score=42.39 Aligned_cols=14 Identities=7% Similarity=0.245 Sum_probs=6.3
Q ss_pred HHHhhHHHHHHHHh
Q 002710 189 QRVKTKSIAEAFHE 202 (890)
Q Consensus 189 ~~~~~~~l~~~l~~ 202 (890)
...++..+...|..
T Consensus 22 ae~e~~~lk~~l~~ 35 (769)
T PF05911_consen 22 AEAEAASLKQQLEA 35 (769)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 234
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.61 E-value=8.1 Score=41.45 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=48.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 631 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINA 710 (890)
Q Consensus 631 l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~ 710 (890)
+..++...+..+..+..++.....++....+++..+..++.+++.++.-+..+...+..-+......-..+..++..++.
T Consensus 203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleD 282 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELED 282 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555555555555555555555555544444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002710 711 LVESAKLRILHAEEQMK 727 (890)
Q Consensus 711 ~~~~~~~~~~~l~~~~~ 727 (890)
........+...++.++
T Consensus 283 kyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 283 KYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 235
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.27 E-value=17 Score=41.28 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhccC
Q 002710 527 AEIKSLKALIEKLQKDKLESQIMLDMYGQE 556 (890)
Q Consensus 527 ~el~~l~~~~~~l~~~~~~l~~~~~~~~~~ 556 (890)
.-..-+..++..++.++...+..+..|...
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFKQE 190 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777777777777777777666543
No 236
>PRK11281 hypothetical protein; Provisional
Probab=93.23 E-value=28 Score=43.11 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002710 568 ESERRAHSQAEVLKNAL 584 (890)
Q Consensus 568 ~~~~~~~~~~~~l~~~L 584 (890)
..+......+.++...|
T Consensus 163 ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 163 AALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 237
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.11 E-value=9.4 Score=37.40 Aligned_cols=13 Identities=46% Similarity=0.726 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 002710 795 ERKKLEEELMEVN 807 (890)
Q Consensus 795 ~~~~l~~e~~~l~ 807 (890)
++.+++.++..+.
T Consensus 177 erkrle~e~k~lq 189 (307)
T PF10481_consen 177 ERKRLEAEVKALQ 189 (307)
T ss_pred HHhhHHHHHHHHh
Confidence 4445555555554
No 238
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.044 Score=58.58 Aligned_cols=50 Identities=30% Similarity=0.848 Sum_probs=34.5
Q ss_pred cccccccccccCC----cccccCCCcccHHHHHHHhccC-----CCCccC--CCcCcCCCC
Q 002710 835 ILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIR-----HRKCPG--CGTAFGQSD 884 (890)
Q Consensus 835 ~l~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~-----~~~CP~--C~~~~~~~d 884 (890)
...|+||+..... ..+..|||.||..|...++..+ ...||. |...+...+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~ 206 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLES 206 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHH
Confidence 4689999944333 2356899999999999998843 234765 655555443
No 239
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=93.08 E-value=0.05 Score=43.38 Aligned_cols=36 Identities=22% Similarity=0.606 Sum_probs=27.7
Q ss_pred ccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 836 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
-.|-+|....-.+ ||.||..|.. ....|++||+.+.
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAY-----kkGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAY-----KKGICAMCGKKIL 80 (90)
T ss_pred ccccccccccccC-----CCccChhhhc-----ccCcccccCCeec
Confidence 3788887654433 9999999975 4567999999884
No 240
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.07 E-value=15 Score=39.58 Aligned_cols=67 Identities=19% Similarity=0.046 Sum_probs=39.3
Q ss_pred CCCCccccchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHH
Q 002710 41 SPSSNKSVDSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLI 107 (890)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~ 107 (890)
+++.-...|+..+-.-..+-.+.++..-+--..|-.+...|..+-...++.....-..+.++...+.
T Consensus 55 ~~~tkt~~d~d~lt~lle~k~~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels 121 (596)
T KOG4360|consen 55 RQMTKTYNDIDFLTELLEEKRRDLELAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELS 121 (596)
T ss_pred chhhccccchHHHHHHHhcccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhh
Confidence 3344566677777666666666665555555555566666666666666665555444554444444
No 241
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=93.01 E-value=0.09 Score=37.07 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=32.8
Q ss_pred ccccccccccC--CcccccCC--CcccHHHHHHHhccCCCCccCCCcCcCCCCc
Q 002710 836 LKCGVCFDRPK--EVVITKCF--HLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 885 (890)
Q Consensus 836 l~C~iC~~~~~--~~~~~~Cg--H~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 885 (890)
-.|..|...+. .+-..-|. .+||..|....+ ...||.||..|....+
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l---~~~CPNCgGelv~RP~ 56 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETML---NGVCPNCGGELVRRPR 56 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh---cCcCcCCCCccccCCC
Confidence 46777876542 22233344 489999999885 3679999999987644
No 242
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.92 E-value=18 Score=40.09 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhHHH
Q 002710 612 AEIIELVAKLDASERD 627 (890)
Q Consensus 612 ~el~~l~~~~~~~~~~ 627 (890)
.++..+...+..+...
T Consensus 81 ~~l~~l~~~~~~l~a~ 96 (423)
T TIGR01843 81 ADAAELESQVLRLEAE 96 (423)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 243
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.89 E-value=9.5 Score=36.84 Aligned_cols=36 Identities=19% Similarity=0.020 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 002710 667 LQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALA 702 (890)
Q Consensus 667 ~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~ 702 (890)
...+..++..+..+.-+...+.+.+..+..+.+.+.
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443
No 244
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.85 E-value=18 Score=40.02 Aligned_cols=18 Identities=6% Similarity=0.296 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 002710 770 SSDKEYEQIQRKTEDMRK 787 (890)
Q Consensus 770 ~~~~~l~~l~~~l~~l~~ 787 (890)
.+..++..+...+..+..
T Consensus 250 ~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 250 EAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 245
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.74 E-value=16 Score=44.00 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002710 605 QRLSAAEAEIIELVAKLDASERDVMELEE 633 (890)
Q Consensus 605 ~~l~~l~~el~~l~~~~~~~~~~~~~l~~ 633 (890)
....-+..++..++.++...+..+.....
T Consensus 194 ~a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 194 AAADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554443
No 246
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.56 E-value=16 Score=38.60 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 002710 801 EELMEVNNKVAELTSETG 818 (890)
Q Consensus 801 ~e~~~l~~~l~~l~~~~~ 818 (890)
.++..++..+..|....+
T Consensus 276 ~Ev~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 276 SEVKRLKAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 456666666666665554
No 247
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.39 E-value=0.059 Score=46.55 Aligned_cols=33 Identities=33% Similarity=0.706 Sum_probs=27.1
Q ss_pred cccccccccccCC---cccccCC------CcccHHHHHHHhc
Q 002710 835 ILKCGVCFDRPKE---VVITKCF------HLFCNPCIQRNLE 867 (890)
Q Consensus 835 ~l~C~iC~~~~~~---~~~~~Cg------H~fC~~C~~~~~~ 867 (890)
.+.|.||++...+ +|.++|| |+||..|+.+|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 4789999998755 6777898 5699999999943
No 248
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=92.33 E-value=0.048 Score=40.39 Aligned_cols=32 Identities=19% Similarity=0.439 Sum_probs=25.3
Q ss_pred ccccccccccC----CcccccCCCcccHHHHHHHhc
Q 002710 836 LKCGVCFDRPK----EVVITKCFHLFCNPCIQRNLE 867 (890)
Q Consensus 836 l~C~iC~~~~~----~~~~~~CgH~fC~~C~~~~~~ 867 (890)
-.|++|...|. .+....||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 46899987763 356668999999999987765
No 249
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.30 E-value=36 Score=42.06 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=15.7
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 680 LVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLR 718 (890)
Q Consensus 680 l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~ 718 (890)
+...+....+.++.+..+.......+..+......++.+
T Consensus 270 Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQ 308 (1109)
T PRK10929 270 LSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQ 308 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444433333
No 250
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.12 E-value=4.1 Score=42.54 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002710 777 QIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSET 817 (890)
Q Consensus 777 ~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~ 817 (890)
..-...+.+..++.....+...+...+......+++|+..+
T Consensus 96 ~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 96 EYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344444444444444455555555666666666665543
No 251
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=92.04 E-value=12 Score=39.91 Aligned_cols=212 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 640 REAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRI 719 (890)
Q Consensus 640 ~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~ 719 (890)
..+..-...+......+..++..+....-.+.........+...+..-......-+......+..+......+... -
T Consensus 1 erl~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~---~ 77 (344)
T PF12777_consen 1 ERLENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEI---K 77 (344)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCH---H
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------------------------------------------
Q 002710 720 LHAEEQMKACLTEALRYNSEDRHLAVNLET-------------------------------------------------- 749 (890)
Q Consensus 720 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 749 (890)
...+..+......+......+..+...--.
T Consensus 78 ~~a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~~~~~k~~~W~~ak~~l~~~~~Fl~ 157 (344)
T PF12777_consen 78 EEAEEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPKGKLPKDTSWESAKKLLSDSDNFLQ 157 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S-SEE---HHHHHHCHHCSSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhccccccccccHHHHHHHHHhHHHHHH
Q ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
Q 002710 750 -------------------------------------------------------------TKWELADAEKELKWLKSAV 768 (890)
Q Consensus 750 -------------------------------------------------------------~~~~i~~l~~~~~~~~~~~ 768 (890)
....+..+...+......+
T Consensus 158 ~L~~fd~~~i~~~~~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L 237 (344)
T PF12777_consen 158 RLKNFDKDNIPEATIKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQL 237 (344)
T ss_dssp HHHHS-GGG--HHHHHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHhHhcccCcccccccccccC
Q 002710 769 TSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKAILKCGVCFDRPK 846 (890)
Q Consensus 769 ~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~--~~~~~l~~e~~~~~~~l~C~iC~~~~~ 846 (890)
...+..+..+...+..+..+++....+...++.++.....++.+......+ ++..+..+.+..+...+.+-+..-...
T Consensus 238 ~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~lla 317 (344)
T PF12777_consen 238 AEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLLA 317 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHHH
Q ss_pred CcccccCC
Q 002710 847 EVVITKCF 854 (890)
Q Consensus 847 ~~~~~~Cg 854 (890)
...+..||
T Consensus 318 aa~isY~G 325 (344)
T PF12777_consen 318 AAFISYLG 325 (344)
T ss_dssp HHHHHCCC
T ss_pred HHHHHHcC
No 252
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.96 E-value=7.7 Score=33.62 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002710 599 AEAACQQRLSAAEAEIIELVAKLDASERDVME 630 (890)
Q Consensus 599 ~~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~ 630 (890)
.+..++.++..++.++..+....+.+..++..
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVK 55 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444433333
No 253
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=91.76 E-value=0.05 Score=55.43 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=32.0
Q ss_pred cccccccccccCCcccc----cCC--CcccHHHHHHHhccCCCCccCCCcC
Q 002710 835 ILKCGVCFDRPKEVVIT----KCF--HLFCNPCIQRNLEIRHRKCPGCGTA 879 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~----~Cg--H~fC~~C~~~~~~~~~~~CP~C~~~ 879 (890)
.-.||||+..+.-.++. .=| |.+|.-|--.|.- ...+||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-cCccCCCCCCC
Confidence 34899999887543333 245 4569999999966 45679999974
No 254
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.67 E-value=0.12 Score=45.67 Aligned_cols=20 Identities=25% Similarity=0.803 Sum_probs=17.0
Q ss_pred cccccccccccCCcccccCC
Q 002710 835 ILKCGVCFDRPKEVVITKCF 854 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~Cg 854 (890)
..+||||++.+-+.|+|-|.
T Consensus 2 d~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CccCceeccCCCceEEEEec
Confidence 47899999999998888764
No 255
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=91.66 E-value=0.022 Score=42.76 Aligned_cols=40 Identities=23% Similarity=0.534 Sum_probs=21.9
Q ss_pred ccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 836 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
+.||.|...+.-.- ||.+|..|-.... ....||.|+.++.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~--~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYK--KEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEE--EEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC----CEEECccccccce--ecccCCCcccHHH
Confidence 67999997743222 8888999977542 3456999987753
No 256
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.57 E-value=34 Score=40.30 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 002710 602 ACQQRLSAAE 611 (890)
Q Consensus 602 ~l~~~l~~l~ 611 (890)
.++..+..+.
T Consensus 562 ei~~rv~~Lk 571 (717)
T PF10168_consen 562 EIQRRVKLLK 571 (717)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 257
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.45 E-value=32 Score=39.70 Aligned_cols=12 Identities=8% Similarity=-0.114 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHh
Q 002710 571 RRAHSQAEVLKN 582 (890)
Q Consensus 571 ~~~~~~~~~l~~ 582 (890)
..+...+..+..
T Consensus 164 ~~~~~~~~~~~~ 175 (563)
T TIGR00634 164 RELYQAWLKARQ 175 (563)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 258
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.40 E-value=30 Score=39.32 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002710 599 AEAACQQRLSAAEAEIIELVAKLDAS 624 (890)
Q Consensus 599 ~~~~l~~~l~~l~~el~~l~~~~~~~ 624 (890)
...-++.++..++.++......+...
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 259
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=91.17 E-value=0.11 Score=61.04 Aligned_cols=47 Identities=30% Similarity=0.653 Sum_probs=34.2
Q ss_pred ccccccccccCC---cccccCCCcccHHHHHHHhccCC---------CCccCCCcCcCC
Q 002710 836 LKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRH---------RKCPGCGTAFGQ 882 (890)
Q Consensus 836 l~C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~~~---------~~CP~C~~~~~~ 882 (890)
--|-||+..--. .+.+.|||+|-..|+...+..|. ..||+|..++-.
T Consensus 3487 DmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3487 DMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 457788764322 45669999999999998877532 249999887753
No 260
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=91.16 E-value=28 Score=38.54 Aligned_cols=13 Identities=8% Similarity=0.018 Sum_probs=9.2
Q ss_pred CccCCCcCcCCCC
Q 002710 872 KCPGCGTAFGQSD 884 (890)
Q Consensus 872 ~CP~C~~~~~~~d 884 (890)
.||.-..+|+.-.
T Consensus 389 ~~~~~~qpf~~lp 401 (861)
T KOG1899|consen 389 NNITSAQPFSPLP 401 (861)
T ss_pred cccccCCcCCCCC
Confidence 3888888887643
No 261
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=91.11 E-value=0.015 Score=45.17 Aligned_cols=33 Identities=15% Similarity=0.436 Sum_probs=18.5
Q ss_pred cccccccccccCC----cccccCCCcccHHHHHHHhc
Q 002710 835 ILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLE 867 (890)
Q Consensus 835 ~l~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~ 867 (890)
.-.|.+|...|.- .....||++||..|......
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 3679999998833 45558999999999986654
No 262
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=91.08 E-value=0.1 Score=57.69 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=26.2
Q ss_pred ccccccccccC---------CcccccCCCcccHHHHHHHhc
Q 002710 836 LKCGVCFDRPK---------EVVITKCFHLFCNPCIQRNLE 867 (890)
Q Consensus 836 l~C~iC~~~~~---------~~~~~~CgH~fC~~C~~~~~~ 867 (890)
..|..|...|. .+.+..||++||..|......
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~ 501 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAH 501 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCccc
Confidence 46999999883 456789999999999987653
No 263
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=90.68 E-value=0.085 Score=45.10 Aligned_cols=46 Identities=28% Similarity=0.500 Sum_probs=31.5
Q ss_pred hHhcccCcccccccccccCCcccccCCCc--ccHHHHHHHhccCCCCccCCCcCc
Q 002710 828 EIKDCKAILKCGVCFDRPKEVVITKCFHL--FCNPCIQRNLEIRHRKCPGCGTAF 880 (890)
Q Consensus 828 e~~~~~~~l~C~iC~~~~~~~~~~~CgH~--fC~~C~~~~~~~~~~~CP~C~~~~ 880 (890)
+.+.+..++.|..-.-.+.......|||. ++++| ++|-||.|+..-
T Consensus 23 ~~k~~~~il~Crt~~~G~~~~~C~~Cg~~~~~~~SC-------k~R~CP~C~~~~ 70 (111)
T PF14319_consen 23 QRKAVEAILACRTEALGFHRYRCEDCGHEKIVYNSC-------KNRHCPSCQAKA 70 (111)
T ss_pred HHHHHHHHHhcCCccCCcceeecCCCCceEEecCcc-------cCcCCCCCCChH
Confidence 33444445777776666666677779987 48888 567799998653
No 264
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.48 E-value=6.5 Score=41.06 Aligned_cols=13 Identities=8% Similarity=-0.026 Sum_probs=5.9
Q ss_pred ccCCCcCcCCCCc
Q 002710 873 CPGCGTAFGQSDV 885 (890)
Q Consensus 873 CP~C~~~~~~~d~ 885 (890)
+++.+..++...|
T Consensus 268 y~i~~~~I~~~si 280 (314)
T PF04111_consen 268 YKIDKDKIGGVSI 280 (314)
T ss_dssp S-ECTTEECTCES
T ss_pred eeccCCccCCeee
Confidence 4555555554433
No 265
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=90.44 E-value=36 Score=38.61 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 371 NLVNDQLQHWNVEVERYKALTDSL 394 (890)
Q Consensus 371 ~~l~~~~~~~~~~l~~~~~~~~~l 394 (890)
.....-+..|..+++.+.-.+...
T Consensus 302 ~K~q~LL~~WREKVFaLmVQLkaQ 325 (739)
T PF07111_consen 302 RKCQQLLSRWREKVFALMVQLKAQ 325 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345666777888877776665443
No 266
>PRK04023 DNA polymerase II large subunit; Validated
Probab=90.20 E-value=0.16 Score=58.84 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=35.4
Q ss_pred cccccccccccCCcccccCCC-----cccHHHHHHHhccCCCCccCCCcCcCCCCc
Q 002710 835 ILKCGVCFDRPKEVVITKCFH-----LFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 885 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH-----~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 885 (890)
.-.|+-|+.......+-.||. .||..|-... ....||.|+.......-
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~---~~y~CPKCG~El~~~s~ 678 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEV---EEDECEKCGREPTPYSK 678 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCcceeCccccCcC---CCCcCCCCCCCCCccce
Confidence 358999998866566667995 4999994433 34569999998876653
No 267
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=90.00 E-value=0.28 Score=42.74 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=28.7
Q ss_pred cccccccccccC-----CcccccCCCcccHHHHHHHhccCCCCccCCCc
Q 002710 835 ILKCGVCFDRPK-----EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 878 (890)
Q Consensus 835 ~l~C~iC~~~~~-----~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~ 878 (890)
.-.|.+|..+|. ..+...|+|.+|..|--.......-.|.+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 468999988752 25666899999999976532222335888864
No 268
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.81 E-value=48 Score=39.06 Aligned_cols=26 Identities=8% Similarity=0.187 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhc
Q 002710 529 IKSLKALIEKLQKDKLESQIMLDMYG 554 (890)
Q Consensus 529 l~~l~~~~~~l~~~~~~l~~~~~~~~ 554 (890)
...+..++..+...+......+..+-
T Consensus 264 r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 264 REQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555554444444
No 269
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=89.80 E-value=0.078 Score=43.65 Aligned_cols=13 Identities=46% Similarity=0.902 Sum_probs=10.3
Q ss_pred cccccCCCcccHH
Q 002710 848 VVITKCFHLFCNP 860 (890)
Q Consensus 848 ~~~~~CgH~fC~~ 860 (890)
.+...|||.||..
T Consensus 24 ~vkc~CGh~f~d~ 36 (112)
T PF08882_consen 24 VVKCDCGHEFCDA 36 (112)
T ss_pred eeeccCCCeecCh
Confidence 4555899999976
No 270
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.62 E-value=23 Score=39.35 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 773 KEYEQIQRKTEDMRKELENERNERKKLEEELMEVN 807 (890)
Q Consensus 773 ~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~ 807 (890)
.++..+...+..|...+......+..|+..+..++
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555545555554444443
No 271
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=89.60 E-value=0.18 Score=29.98 Aligned_cols=12 Identities=42% Similarity=1.065 Sum_probs=6.5
Q ss_pred CCCccCCCcCcC
Q 002710 870 HRKCPGCGTAFG 881 (890)
Q Consensus 870 ~~~CP~C~~~~~ 881 (890)
.+.||.||-.|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 444666655553
No 272
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=89.43 E-value=19 Score=34.02 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002710 660 QTQNQHLLQQVAERDDLNIKL 680 (890)
Q Consensus 660 ~~~~~~~~~~~~~~~~~i~~l 680 (890)
+-++..+...+++...++..+
T Consensus 48 kien~~l~~kIeERn~eL~~L 68 (177)
T PF13870_consen 48 KIENQQLNEKIEERNKELLKL 68 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 273
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=89.34 E-value=0.11 Score=53.37 Aligned_cols=49 Identities=20% Similarity=0.395 Sum_probs=0.0
Q ss_pred ccccccccccc-------------------CCcccccCCCcccHHHHHHHhccC--------CCCccCCCcCcCCC
Q 002710 835 ILKCGVCFDRP-------------------KEVVITKCFHLFCNPCIQRNLEIR--------HRKCPGCGTAFGQS 883 (890)
Q Consensus 835 ~l~C~iC~~~~-------------------~~~~~~~CgH~fC~~C~~~~~~~~--------~~~CP~C~~~~~~~ 883 (890)
.-.||+|...- ...+.-||||+.-..+..-|.... ..-||+|..++...
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 47899998631 125666999998777887776531 12499999998754
No 274
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=89.33 E-value=0.29 Score=55.32 Aligned_cols=46 Identities=26% Similarity=0.681 Sum_probs=35.1
Q ss_pred cccccccccccCCc----ccccCCCcccHHHHHHHhcc------CCCCccCCCcCc
Q 002710 835 ILKCGVCFDRPKEV----VITKCFHLFCNPCIQRNLEI------RHRKCPGCGTAF 880 (890)
Q Consensus 835 ~l~C~iC~~~~~~~----~~~~CgH~fC~~C~~~~~~~------~~~~CP~C~~~~ 880 (890)
.+.|.||.+.++.. ....|+|+|=..||..|..+ ..-.||.|....
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 48999999987652 22379999999999999874 223599998443
No 275
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=89.19 E-value=0.2 Score=49.25 Aligned_cols=49 Identities=6% Similarity=-0.172 Sum_probs=39.4
Q ss_pred hcccCcccccccccccCCcccccCCCc-ccHHHHHHHhccCCCCccCCCcCcC
Q 002710 830 KDCKAILKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 830 ~~~~~~l~C~iC~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
+.+...+.|.+|....-..+..+|||- ||.+|..-. -...||+|.....
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s---~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASAS---ASPTSSTCDHNDH 387 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhhcc---cCCccccccccce
Confidence 456667899999999888898999985 899999833 5678999976543
No 276
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.08 E-value=18 Score=38.49 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002710 732 EALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQI 778 (890)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l 778 (890)
+++.+..+++.....+..++..+......+......+..+..+++..
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~v 313 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQV 313 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443333333333333333333333
No 277
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.06 E-value=25 Score=34.69 Aligned_cols=8 Identities=25% Similarity=0.941 Sum_probs=3.4
Q ss_pred ccCCCcCc
Q 002710 873 CPGCGTAF 880 (890)
Q Consensus 873 CP~C~~~~ 880 (890)
|-.|+.-|
T Consensus 197 C~sC~qqI 204 (230)
T PF10146_consen 197 CQSCHQQI 204 (230)
T ss_pred hHhHHHHH
Confidence 44444333
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.75 E-value=0.26 Score=54.48 Aligned_cols=42 Identities=21% Similarity=0.596 Sum_probs=33.2
Q ss_pred ccccccccccCC--cccccCCCcccHHHHHHHhccCCCCccC-CCc
Q 002710 836 LKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEIRHRKCPG-CGT 878 (890)
Q Consensus 836 l~C~iC~~~~~~--~~~~~CgH~fC~~C~~~~~~~~~~~CP~-C~~ 878 (890)
+.|.+|.-.... .++..|||+.-.+|...|+.+ +..||. ||.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~-gd~CpsGCGC 1073 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRT-GDVCPSGCGC 1073 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhc-CCcCCCCCCc
Confidence 578888876655 456699999999999999996 457997 554
No 279
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=88.69 E-value=0.15 Score=52.03 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=31.4
Q ss_pred cccccccccccCCcccc---cCCC--cccHHHHHHHhccCCCCccCCCc
Q 002710 835 ILKCGVCFDRPKEVVIT---KCFH--LFCNPCIQRNLEIRHRKCPGCGT 878 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~---~CgH--~fC~~C~~~~~~~~~~~CP~C~~ 878 (890)
.-.||||+..+.-.++. .=|+ .+|.-|--.|.- ...+||.|+.
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-VRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 47899999887543332 3454 459999999966 4567999996
No 280
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.66 E-value=28 Score=34.89 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 002710 605 QRLSAAEAEIIELVAKLDAS 624 (890)
Q Consensus 605 ~~l~~l~~el~~l~~~~~~~ 624 (890)
.++..++.+....+..+...
T Consensus 12 ~rL~q~eee~~~a~~~L~e~ 31 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEES 31 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 281
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=88.58 E-value=0.083 Score=54.70 Aligned_cols=44 Identities=30% Similarity=0.389 Sum_probs=21.8
Q ss_pred ccccccccccCCcccccC---C--CcccHHHHHHHhccCCCCccCCCcCc
Q 002710 836 LKCGVCFDRPKEVVITKC---F--HLFCNPCIQRNLEIRHRKCPGCGTAF 880 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~C---g--H~fC~~C~~~~~~~~~~~CP~C~~~~ 880 (890)
-.||||+..+.-.++..= | |.+|.-|--.|.- ....||.||..-
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNTD 221 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---S
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCCC
Confidence 589999988765444432 4 5679999999966 455799999753
No 282
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.56 E-value=0.36 Score=48.69 Aligned_cols=48 Identities=19% Similarity=0.588 Sum_probs=37.4
Q ss_pred ccccccccccCC---c-ccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCC
Q 002710 836 LKCGVCFDRPKE---V-VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 836 l~C~iC~~~~~~---~-~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 884 (890)
-.||+|...... + +-.||||..|..|...... ....||+||+++-.+.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCccccCc
Confidence 479999986522 2 2238999999999999887 6778999998776554
No 283
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.33 E-value=0.48 Score=32.40 Aligned_cols=39 Identities=23% Similarity=0.624 Sum_probs=21.1
Q ss_pred ccccccccCCcccc---cCCCcccHHHHHHHhccCCC-CccCC
Q 002710 838 CGVCFDRPKEVVIT---KCFHLFCNPCIQRNLEIRHR-KCPGC 876 (890)
Q Consensus 838 C~iC~~~~~~~~~~---~CgH~fC~~C~~~~~~~~~~-~CP~C 876 (890)
|.+|.+...--+.- .|+=.+=..|+..++..+.. +||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777765443333 37766778999999986665 49998
No 285
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=88.28 E-value=0.1 Score=52.49 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=33.1
Q ss_pred cccccccc-cc----CCcccccCCCcccHHHHHHHhc-----cC-CCCccCCCcCcC
Q 002710 836 LKCGVCFD-RP----KEVVITKCFHLFCNPCIQRNLE-----IR-HRKCPGCGTAFG 881 (890)
Q Consensus 836 l~C~iC~~-~~----~~~~~~~CgH~fC~~C~~~~~~-----~~-~~~CP~C~~~~~ 881 (890)
..|.+|.. .| +.+.+..||++||..|....+. ++ -+.|+.|-..+.
T Consensus 169 ~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~ 225 (288)
T KOG1729|consen 169 TECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELE 225 (288)
T ss_pred eecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHh
Confidence 58999998 44 3366779999999999877432 12 225999976663
No 286
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.05 E-value=40 Score=35.93 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 673 RDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAE 723 (890)
Q Consensus 673 ~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~ 723 (890)
.......+..+...+......+......++..+..++..+.....++....
T Consensus 352 ~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 352 QKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444444444444443333
No 287
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=87.94 E-value=25 Score=33.43 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 605 QRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDL 676 (890)
Q Consensus 605 ~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 676 (890)
.+|-.+...+...+..+......+..+...+.....+++....++........-+...+..+..++..+...
T Consensus 31 ~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~ 102 (202)
T PF06818_consen 31 SEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREE 102 (202)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHH
Confidence 444444555555555555555555555554444444444444444444444444444444443333333333
No 288
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.78 E-value=25 Score=33.27 Aligned_cols=78 Identities=12% Similarity=0.026 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 645 YIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHA 722 (890)
Q Consensus 645 l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l 722 (890)
+...++.-...+..+..........+......+..+..+...+...+......+..+..++..+......+......+
T Consensus 54 l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 54 LNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444444444444444444444444444444444444443333333
No 289
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=87.69 E-value=12 Score=36.62 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=36.6
Q ss_pred CcccccccccccCCcccc-cCCCcccHHHHHHHhcc-CCCCccCCCcC
Q 002710 834 AILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEI-RHRKCPGCGTA 879 (890)
Q Consensus 834 ~~l~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~-~~~~CP~C~~~ 879 (890)
-.+.||+-+..+.+|++- +|||+|=..-|...+.. ....||+=|++
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 347899988899998766 99999999988888763 35579996555
No 290
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=87.53 E-value=0.21 Score=49.60 Aligned_cols=42 Identities=21% Similarity=0.590 Sum_probs=35.5
Q ss_pred cccccccccc----CCcccccCCCcccHHHHHHHhccCCCCccCCCc
Q 002710 836 LKCGVCFDRP----KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 878 (890)
Q Consensus 836 l~C~iC~~~~----~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~ 878 (890)
..||||.+.. ..|..++|||.-=..|.......+ -.||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4599999754 447888999998899999998866 88999988
No 291
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=87.36 E-value=0.14 Score=29.47 Aligned_cols=22 Identities=32% Similarity=0.828 Sum_probs=11.3
Q ss_pred cHHHHHHHhccCCCCccCCCcCc
Q 002710 858 CNPCIQRNLEIRHRKCPGCGTAF 880 (890)
Q Consensus 858 C~~C~~~~~~~~~~~CP~C~~~~ 880 (890)
|..|=..+-. ....||.||.+|
T Consensus 2 Cp~CG~~~~~-~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIED-DAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCC-cCcchhhhCCcC
Confidence 3444333322 455577777654
No 292
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=87.30 E-value=0.43 Score=46.97 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=24.5
Q ss_pred cccccCCCcccHHHHHHHhccC--------CCCccCCCcCcCCCC
Q 002710 848 VVITKCFHLFCNPCIQRNLEIR--------HRKCPGCGTAFGQSD 884 (890)
Q Consensus 848 ~~~~~CgH~fC~~C~~~~~~~~--------~~~CP~C~~~~~~~d 884 (890)
....||||+.-..-..=|.... ..-||+|...+....
T Consensus 373 haF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 373 HAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred cccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 4556999986666666565431 224999998877553
No 293
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=87.24 E-value=0.29 Score=39.28 Aligned_cols=26 Identities=31% Similarity=0.654 Sum_probs=17.0
Q ss_pred ccccCCCcccHHHHHHHhccCCCCccCCCcC
Q 002710 849 VITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 879 (890)
Q Consensus 849 ~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~ 879 (890)
.+++|||+|-.. ...++ .=||.||..
T Consensus 4 ~CtrCG~vf~~g-~~~il----~GCp~CG~n 29 (112)
T COG3364 4 QCTRCGEVFDDG-SEEIL----SGCPKCGCN 29 (112)
T ss_pred eecccccccccc-cHHHH----ccCccccch
Confidence 467899999665 22221 239999864
No 294
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.20 E-value=10 Score=35.76 Aligned_cols=66 Identities=24% Similarity=0.317 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002710 751 KWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSE 816 (890)
Q Consensus 751 ~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~ 816 (890)
+..+.++..+...+...+..++.++...+..+..+..+...++....++..++..++.+++.|...
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 333333344444444444555555555555555555555555555556666666666666666554
No 295
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=87.05 E-value=1.4 Score=44.97 Aligned_cols=118 Identities=14% Similarity=0.203 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002710 699 QALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQI 778 (890)
Q Consensus 699 ~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l 778 (890)
..++.....+...+..+...+..+...+..+...+..+...+..+...+..++..+..+...+..+...+......+..+
T Consensus 38 saLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~L 117 (326)
T PF04582_consen 38 SALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDL 117 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHH
Confidence 33333333333444444444444444444444444444444444444444445555555555555555555555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002710 779 QRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSE 816 (890)
Q Consensus 779 ~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~ 816 (890)
+..+..+...+.+++..+...--.+..+..++..|...
T Consensus 118 qs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 118 QSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 66666666666666666666666666666666666544
No 296
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.97 E-value=39 Score=34.54 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcchH----------HHHHHHHHHHHHHHHHHHhhh
Q 002710 529 IKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDL----------MEIKESERRAHSQAEVLKNAL 584 (890)
Q Consensus 529 l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i----------~~l~~~~~~~~~~~~~l~~~L 584 (890)
+..|...+..+......|+..++.--.....++++ ..+...+..+...|..|...|
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL 245 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQL 245 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777766543444444443 233333444555555554433
No 297
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.95 E-value=42 Score=34.97 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=6.8
Q ss_pred HHHHHHHHhHhccc
Q 002710 820 AAIQKLQDEIKDCK 833 (890)
Q Consensus 820 ~~~~~l~~e~~~~~ 833 (890)
.++..|...+..+.
T Consensus 271 ~Ei~~Lk~~~~~Le 284 (312)
T smart00787 271 KEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555544443
No 298
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=86.92 E-value=21 Score=35.32 Aligned_cols=8 Identities=0% Similarity=0.306 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 002710 193 TKSIAEAF 200 (890)
Q Consensus 193 ~~~l~~~l 200 (890)
++.+.+.|
T Consensus 133 ieTmrssL 140 (305)
T PF15290_consen 133 IETMRSSL 140 (305)
T ss_pred HHHHHhhh
Confidence 33333333
No 299
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=86.65 E-value=26 Score=32.19 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=22.9
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 679 KLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKAC 729 (890)
Q Consensus 679 ~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~ 729 (890)
.+...+....+.-..|....+.++..+..+...++....-+..+.-.+.-+
T Consensus 88 ~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL 138 (159)
T PF05384_consen 88 ELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYL 138 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555555554444444444444443333333
No 300
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.63 E-value=37 Score=34.04 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002710 798 KLEEELMEVNNKVAELT 814 (890)
Q Consensus 798 ~l~~e~~~l~~~l~~l~ 814 (890)
+++..+..|+..|..++
T Consensus 186 ~lq~QL~~L~~EL~~~k 202 (246)
T PF00769_consen 186 RLQEQLKELKSELEQLK 202 (246)
T ss_dssp HHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444433
No 301
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.59 E-value=40 Score=34.40 Aligned_cols=48 Identities=21% Similarity=0.122 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 687 TKQVQSFLLSEKQALARQLQQIN-ALVESAKLRILHAEEQMKACLTEAL 734 (890)
Q Consensus 687 ~~~~~~~l~~~~~~l~~el~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 734 (890)
....+..+..++-.++..+..-+ .-++.+.+.+..+....+.++..++
T Consensus 154 ~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 154 KQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33334444444444444443322 2334455555555555555544443
No 302
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=86.40 E-value=39 Score=34.07 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 740 DRHLAVNLETTKWELADAEKELKWLKSAVT 769 (890)
Q Consensus 740 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 769 (890)
+..+..+++.+...+..++.+.-..+....
T Consensus 245 F~~fK~E~ekmtKk~kklEKE~l~wr~K~e 274 (391)
T KOG1850|consen 245 FTKFKQEMEKMTKKIKKLEKETLIWRTKWE 274 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444333333333
No 303
>PHA02862 5L protein; Provisional
Probab=86.08 E-value=0.62 Score=40.50 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=33.2
Q ss_pred ccccccccccCCcccccCCCc-----ccHHHHHHHhccC-CCCccCCCcCcCC
Q 002710 836 LKCGVCFDRPKEVVITKCFHL-----FCNPCIQRNLEIR-HRKCPGCGTAFGQ 882 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~-----fC~~C~~~~~~~~-~~~CP~C~~~~~~ 882 (890)
-.|=||++.-.+. ..||+-. .-.+|+..|+... ...||.|+.+|.-
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 3689999886544 4677532 3578999999853 3459999998864
No 304
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=86.03 E-value=38 Score=33.58 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=33.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 002710 592 RVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDR--EAEAYIAEMETIGQAFEDMQTQN 663 (890)
Q Consensus 592 ~~~~~~~~~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~--~~~~l~~e~~~l~~~~~~~~~~~ 663 (890)
.|..+...+..-+..+.+-..+|.+|+.++..+..++- +.+....++ .++....+|..|.+.++.++..+
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWI--EEECHRVEAQLALKEARkEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWI--EEECHRVEAQLALKEARKEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444555555556666666666666555442 222222222 22444445555555555444433
No 305
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=85.94 E-value=43 Score=34.07 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 657 EDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALV 712 (890)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~ 712 (890)
+.++...+++..++-....-+.+.......++.-+..+..+...++.++..+....
T Consensus 102 ~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 102 EQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333344444444433333333333333333334444444444443333333333
No 306
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=85.80 E-value=0.23 Score=29.66 Aligned_cols=23 Identities=30% Similarity=0.947 Sum_probs=13.1
Q ss_pred ccHHHHHHHhccCCCCccCCCcCc
Q 002710 857 FCNPCIQRNLEIRHRKCPGCGTAF 880 (890)
Q Consensus 857 fC~~C~~~~~~~~~~~CP~C~~~~ 880 (890)
+|..|-. .+....+.||.||.++
T Consensus 4 ~Cp~Cg~-~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 4 FCPNCGA-EIDPDAKFCPNCGAKL 26 (26)
T ss_pred CCcccCC-cCCcccccChhhCCCC
Confidence 4555544 2333566788887754
No 307
>PLN02189 cellulose synthase
Probab=85.69 E-value=0.45 Score=56.05 Aligned_cols=46 Identities=26% Similarity=0.619 Sum_probs=36.0
Q ss_pred ccccccccccCC-------cccccCCCcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 836 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 836 l~C~iC~~~~~~-------~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
-.|.||++...- +.+--||-..|.+|..--.+.++..||.|+..+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 489999997532 3344588889999997666667778999999987
No 308
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=85.63 E-value=0.49 Score=43.94 Aligned_cols=48 Identities=25% Similarity=0.618 Sum_probs=35.6
Q ss_pred cccccccccccCC-cccccCCCcccHHHHHHHhccCCCCccCCCcCcCCC
Q 002710 835 ILKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 883 (890)
Q Consensus 835 ~l~C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 883 (890)
...|.+|+...-- ..+-.||-.+--+|++..+. +...||.|+..|...
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q-~~~~cphc~d~w~h~ 229 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQ-RRDICPHCGDLWTHP 229 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhc-ccCcCCchhcccCcc
Confidence 4579999876433 33446766677899999998 466799999888764
No 309
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=85.46 E-value=77 Score=36.58 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002710 602 ACQQRLSAAEAEIIELVAKLDASERDVM 629 (890)
Q Consensus 602 ~l~~~l~~l~~el~~l~~~~~~~~~~~~ 629 (890)
.+..++..+......+..+++.+..++.
T Consensus 172 ~~~~~L~~l~~~~~~~~~eld~L~~ql~ 199 (563)
T TIGR00634 172 KARQQLKDRQQKEQELAQRLDFLQFQLE 199 (563)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 310
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.45 E-value=0.59 Score=41.80 Aligned_cols=31 Identities=26% Similarity=0.584 Sum_probs=25.0
Q ss_pred cCCCcccHHHHHHHhcc----CCC------CccCCCcCcCC
Q 002710 852 KCFHLFCNPCIQRNLEI----RHR------KCPGCGTAFGQ 882 (890)
Q Consensus 852 ~CgH~fC~~C~~~~~~~----~~~------~CP~C~~~~~~ 882 (890)
.||..|-.-|+-.|+.. |+. .||-|..|+.-
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 79999999999999862 332 49999998764
No 311
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=84.97 E-value=0.24 Score=48.41 Aligned_cols=12 Identities=17% Similarity=0.323 Sum_probs=7.7
Q ss_pred ccccccccccCC
Q 002710 836 LKCGVCFDRPKE 847 (890)
Q Consensus 836 l~C~iC~~~~~~ 847 (890)
..|++|...|..
T Consensus 162 ~~C~~C~K~YvS 173 (279)
T KOG2462|consen 162 FSCKYCGKVYVS 173 (279)
T ss_pred ccCCCCCceeee
Confidence 567777766644
No 312
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=84.77 E-value=0.64 Score=29.66 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=8.6
Q ss_pred CCCCccCCCcCc
Q 002710 869 RHRKCPGCGTAF 880 (890)
Q Consensus 869 ~~~~CP~C~~~~ 880 (890)
..-.||.|+.+-
T Consensus 16 ~~~~CP~Cg~~~ 27 (33)
T cd00350 16 APWVCPVCGAPK 27 (33)
T ss_pred CCCcCcCCCCcH
Confidence 355799998753
No 313
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=84.74 E-value=0.76 Score=32.49 Aligned_cols=39 Identities=31% Similarity=0.571 Sum_probs=21.0
Q ss_pred ccccccccCCc----------ccccCCCcccHHHHHHHhccCCCCccCCC
Q 002710 838 CGVCFDRPKEV----------VITKCFHLFCNPCIQRNLEIRHRKCPGCG 877 (890)
Q Consensus 838 C~iC~~~~~~~----------~~~~CgH~fC~~C~~~~~~~~~~~CP~C~ 877 (890)
|--|...|..+ ....|++.||..|=-=... .-..||.|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE-~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHE-TLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTT-TS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhc-cccCCcCCC
Confidence 44566666553 2337999999999544444 567799994
No 314
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.54 E-value=79 Score=35.96 Aligned_cols=8 Identities=0% Similarity=-0.101 Sum_probs=4.2
Q ss_pred ccccCCCc
Q 002710 849 VITKCFHL 856 (890)
Q Consensus 849 ~~~~CgH~ 856 (890)
++-|-||.
T Consensus 354 l~~psG~~ 361 (916)
T KOG0249|consen 354 LLSPSGAS 361 (916)
T ss_pred ccCcchhh
Confidence 33366664
No 315
>PRK11032 hypothetical protein; Provisional
Probab=84.50 E-value=31 Score=31.65 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=18.9
Q ss_pred CCcccccCCCcccHHHHHHHhccCCCCccCCCcC
Q 002710 846 KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 879 (890)
Q Consensus 846 ~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~ 879 (890)
..-|+..|||..|..=- ..-..||.|+..
T Consensus 123 G~LvC~~Cg~~~~~~~p-----~~i~pCp~C~~~ 151 (160)
T PRK11032 123 GNLVCEKCHHHLAFYTP-----EVLPLCPKCGHD 151 (160)
T ss_pred ceEEecCCCCEEEecCC-----CcCCCCCCCCCC
Confidence 44567789997765322 245569999853
No 316
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=84.49 E-value=0.31 Score=29.01 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=14.9
Q ss_pred cccccccccCCcccc--cCCCcc
Q 002710 837 KCGVCFDRPKEVVIT--KCFHLF 857 (890)
Q Consensus 837 ~C~iC~~~~~~~~~~--~CgH~f 857 (890)
.||-|...+...... .|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 589998877553333 599988
No 317
>PLN02436 cellulose synthase A
Probab=84.45 E-value=0.55 Score=55.42 Aligned_cols=46 Identities=26% Similarity=0.670 Sum_probs=36.1
Q ss_pred ccccccccccCC-------cccccCCCcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 836 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 836 l~C~iC~~~~~~-------~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
-.|.||++...- +.+--||-..|.+|..--.+..+..||.|+..+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 489999997522 3444688889999997666667778999999887
No 318
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=84.34 E-value=0.4 Score=34.87 Aligned_cols=41 Identities=17% Similarity=0.388 Sum_probs=26.0
Q ss_pred cccccccccccCCcccccCCCcccHHHHHHHhcc-CCCCccCCCcCcCC
Q 002710 835 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI-RHRKCPGCGTAFGQ 882 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~-~~~~CP~C~~~~~~ 882 (890)
.+.||.|+..+... .++.-|....... ....||+|...++.
T Consensus 2 ~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~~~~ 43 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSRVTD 43 (54)
T ss_pred CcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhhhhh
Confidence 47899999954432 2345555555432 34569999987664
No 319
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=84.33 E-value=0.33 Score=50.05 Aligned_cols=44 Identities=23% Similarity=0.436 Sum_probs=0.0
Q ss_pred cccccccccc-------------CC-cccccCCCcccHHHHHHHhc--cCCCCccCCCcC
Q 002710 836 LKCGVCFDRP-------------KE-VVITKCFHLFCNPCIQRNLE--IRHRKCPGCGTA 879 (890)
Q Consensus 836 l~C~iC~~~~-------------~~-~~~~~CgH~fC~~C~~~~~~--~~~~~CP~C~~~ 879 (890)
..|||=+..+ +. .|-+.|||++...=--.... .+.+.||+|+..
T Consensus 278 pQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------------------------------
T ss_pred CCCCcCCCccccccccccccccccCceeeccccceeeecccccccccccccccCCCcccc
Confidence 6899876532 11 36679999987643211111 247789999854
No 320
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=84.33 E-value=63 Score=34.62 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhhhhHHHHHHHHHHHHH
Q 002710 485 NRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKAL 535 (890)
Q Consensus 485 ~~~~~~~~~l~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~~~~el~~l~~~ 535 (890)
.+|+.+......+..-+..++.......|.+.++...+.....+|..|+..
T Consensus 302 ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~ 352 (622)
T COG5185 302 EKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSN 352 (622)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444444444444433333333333333
No 321
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=84.01 E-value=0.51 Score=46.45 Aligned_cols=43 Identities=28% Similarity=0.519 Sum_probs=26.6
Q ss_pred cccccccccc-------------CCc-ccccCCCcccHH--HHHHHhccCCCCccCCCc
Q 002710 836 LKCGVCFDRP-------------KEV-VITKCFHLFCNP--CIQRNLEIRHRKCPGCGT 878 (890)
Q Consensus 836 l~C~iC~~~~-------------~~~-~~~~CgH~fC~~--C~~~~~~~~~~~CP~C~~ 878 (890)
-.|||-+..+ +.| |-+.|||+-.+. -.+.....+.++||+|+.
T Consensus 291 PQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 291 PQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRV 349 (429)
T ss_pred CCCCcccceeecccccccccccccCCeEEEeccccccccccccccccCcccCcCCeeee
Confidence 6899876542 113 556899986543 112222346788999985
No 322
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=83.70 E-value=10 Score=40.44 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=9.0
Q ss_pred cHHHHHHHhccCCCCccCC
Q 002710 858 CNPCIQRNLEIRHRKCPGC 876 (890)
Q Consensus 858 C~~C~~~~~~~~~~~CP~C 876 (890)
|..|+-.++.+|.|.|-+|
T Consensus 361 ~~~~~~Pl~~tR~r~~~t~ 379 (395)
T PF10267_consen 361 VANCPLPLTRTRLRTLTTL 379 (395)
T ss_pred HhcCCcHHhhccHHHHHHH
Confidence 3445555555554444443
No 323
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=83.66 E-value=0.53 Score=56.25 Aligned_cols=49 Identities=18% Similarity=0.380 Sum_probs=34.7
Q ss_pred ccccccccccCCcccccCCCc-----ccHHHHHHHhc--cCCCCccCCCcCcCCCC
Q 002710 836 LKCGVCFDRPKEVVITKCFHL-----FCNPCIQRNLE--IRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~-----fC~~C~~~~~~--~~~~~CP~C~~~~~~~d 884 (890)
..||-|+..-....+-.||+. +|..|=...-. +....||.|+.+.....
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~ 723 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQ 723 (1337)
T ss_pred EECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccc
Confidence 699999986555566679955 49999765422 11347999998887654
No 324
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.52 E-value=88 Score=35.65 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Q 002710 606 RLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQ--QVAERDDLNIKLVSE 683 (890)
Q Consensus 606 ~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~e 683 (890)
.+..++..+.....+-.....-...++.++....+.+-...+....+...++-....+..... .+-.++..+..-..+
T Consensus 71 ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~a 150 (916)
T KOG0249|consen 71 RITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAA 150 (916)
T ss_pred ccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHH
Confidence 333444433333333333333344455555555555544455555554444444444433222 112223333333333
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 684 SVKTKQVQSFLLSEKQALARQLQQINALVESAKLR 718 (890)
Q Consensus 684 ~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~ 718 (890)
..............+..+..+++.+...+......
T Consensus 151 l~~aee~~~~~eer~~kl~~~~qe~naeL~rarqr 185 (916)
T KOG0249|consen 151 LTKAEEHSGNIEERTRKLEEQLEELNAELQRARQR 185 (916)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444333
No 325
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.49 E-value=0.6 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.778 Sum_probs=17.3
Q ss_pred cHHHHHHHhccCCC-------CccCCCcCc
Q 002710 858 CNPCIQRNLEIRHR-------KCPGCGTAF 880 (890)
Q Consensus 858 C~~C~~~~~~~~~~-------~CP~C~~~~ 880 (890)
|..|-..+-+.-.| .||.||-.+
T Consensus 154 C~~C~~EY~dP~nRRfHAQp~aCp~CGP~~ 183 (750)
T COG0068 154 CPFCDKEYKDPLNRRFHAQPIACPKCGPHL 183 (750)
T ss_pred CHHHHHHhcCccccccccccccCcccCCCe
Confidence 99999988764333 499999754
No 326
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=83.07 E-value=2.6 Score=38.67 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=9.0
Q ss_pred CCCCccCCCcCc
Q 002710 869 RHRKCPGCGTAF 880 (890)
Q Consensus 869 ~~~~CP~C~~~~ 880 (890)
....||+|+.|=
T Consensus 148 ~P~~CPiCga~k 159 (166)
T COG1592 148 APEVCPICGAPK 159 (166)
T ss_pred CCCcCCCCCChH
Confidence 456799999763
No 327
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.77 E-value=0.53 Score=46.00 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=30.0
Q ss_pred cCcccccccccccCCccccc-CCCc------ccHHH--HHHHhccCCCCccCCCcCcCCCCccc
Q 002710 833 KAILKCGVCFDRPKEVVITK-CFHL------FCNPC--IQRNLEIRHRKCPGCGTAFGQSDVRF 887 (890)
Q Consensus 833 ~~~l~C~iC~~~~~~~~~~~-CgH~------fC~~C--~~~~~~~~~~~CP~C~~~~~~~d~~~ 887 (890)
...+.||||...|+...+.+ =+.+ ||..= ++..+- .-..||.||=.|...|+..
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y-~V~vCP~CgyA~~~~~F~~ 65 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFY-EVWVCPHCGYAAFEEDFEK 65 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeee-eEEECCCCCCccccccccc
Confidence 34589999999997643331 1111 22211 111111 2234999999998887543
No 328
>PLN02195 cellulose synthase A
Probab=82.55 E-value=0.87 Score=53.44 Aligned_cols=47 Identities=19% Similarity=0.581 Sum_probs=36.2
Q ss_pred ccccccccccCC-------cccccCCCcccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 836 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 836 l~C~iC~~~~~~-------~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
-.|.||++...- +.+--||-..|.+|..=--+.++..||.|+..+..
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 479999985422 45557888899999965555567789999999983
No 329
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=82.47 E-value=4.9 Score=34.05 Aligned_cols=10 Identities=10% Similarity=0.006 Sum_probs=5.5
Q ss_pred ccccccCCcc
Q 002710 840 VCFDRPKEVV 849 (890)
Q Consensus 840 iC~~~~~~~~ 849 (890)
||...|..+.
T Consensus 85 ICn~~yG~~R 94 (110)
T PRK13169 85 ICNLHYGSRR 94 (110)
T ss_pred ecHHHhCCcC
Confidence 5665665543
No 330
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.16 E-value=68 Score=33.45 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 002710 801 EELMEVNNKVAELTSETG 818 (890)
Q Consensus 801 ~e~~~l~~~l~~l~~~~~ 818 (890)
.++..++.++..|....+
T Consensus 271 ~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 271 KEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 455666666666665553
No 331
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=82.05 E-value=0.37 Score=47.50 Aligned_cols=50 Identities=24% Similarity=0.202 Sum_probs=37.5
Q ss_pred ccCcccccccccccCCcccccCCCc-ccHHHHHHHhccCCCCccCCCcCcC
Q 002710 832 CKAILKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 832 ~~~~l~C~iC~~~~~~~~~~~CgH~-fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
+.....|.+|+.+-.=....+|||. ||-.|.-...-.+.+.||+|...+.
T Consensus 133 ~~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 133 KGATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred ccCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 4456788889876554455599986 8999977773448889999987765
No 332
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=81.92 E-value=1.3 Score=39.55 Aligned_cols=48 Identities=19% Similarity=0.445 Sum_probs=33.6
Q ss_pred cccccccccccCCcccccCC--Cc---ccHHHHHHHhccC-CCCccCCCcCcCCC
Q 002710 835 ILKCGVCFDRPKEVVITKCF--HL---FCNPCIQRNLEIR-HRKCPGCGTAFGQS 883 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~Cg--H~---fC~~C~~~~~~~~-~~~CP~C~~~~~~~ 883 (890)
.-.|=||++... +...||. .+ .=.+|+..|+... ...||.|+.+|...
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 357999998764 3334654 22 2578999999854 44699999988643
No 333
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=81.80 E-value=23 Score=27.73 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhHHhHHHH
Q 002710 673 RDDLNIKLVSESVKTKQV 690 (890)
Q Consensus 673 ~~~~i~~l~~e~~~~~~~ 690 (890)
-+..|..|+.+...+...
T Consensus 10 KDe~Ia~L~eEGekLSk~ 27 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKK 27 (74)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444443333333
No 334
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=81.77 E-value=0.83 Score=54.21 Aligned_cols=46 Identities=26% Similarity=0.653 Sum_probs=35.4
Q ss_pred ccccccccccCC-------cccccCCCcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 836 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 836 l~C~iC~~~~~~-------~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
-.|.||++...- +.+--||-..|.+|..=-.+.++..||.|+..+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 489999987522 4445788889999996555566778999999887
No 335
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.74 E-value=42 Score=37.48 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002710 750 TKWELADAEKELKWLKSAVTSSDKEY 775 (890)
Q Consensus 750 ~~~~i~~l~~~~~~~~~~~~~~~~~l 775 (890)
....|..|...+.+....+..++..+
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444333333333333333
No 336
>PF14353 CpXC: CpXC protein
Probab=81.74 E-value=1 Score=40.04 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=24.9
Q ss_pred ccccccccccCCcccccCCCcccHHHHHHHhcc--CCCCccCCCcCcCCC
Q 002710 836 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI--RHRKCPGCGTAFGQS 883 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~--~~~~CP~C~~~~~~~ 883 (890)
++||.|+..|.-.+-+.--=..=..=....+.. -...||.||..|...
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 678888877654332211111112223333331 123599999998754
No 337
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=81.67 E-value=1e+02 Score=35.06 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhh
Q 002710 571 RRAHSQAEVLKNAL 584 (890)
Q Consensus 571 ~~~~~~~~~l~~~L 584 (890)
..+...+..++.++
T Consensus 158 ~sL~ekl~lld~al 171 (511)
T PF09787_consen 158 RSLQEKLSLLDEAL 171 (511)
T ss_pred hhHHHHHHHHHHHH
Confidence 44445555555444
No 338
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=81.21 E-value=63 Score=32.39 Aligned_cols=13 Identities=8% Similarity=0.181 Sum_probs=4.8
Q ss_pred HhhHHHHHHHHHH
Q 002710 769 TSSDKEYEQIQRK 781 (890)
Q Consensus 769 ~~~~~~l~~l~~~ 781 (890)
..+...+..++..
T Consensus 195 ~~l~~~l~~Lq~~ 207 (240)
T PF12795_consen 195 QRLQQQLQALQNL 207 (240)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 339
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=81.19 E-value=55 Score=31.68 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 002710 649 METIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQA 700 (890)
Q Consensus 649 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~ 700 (890)
|..+...+.+++.........+.++..++..+..++..+......+...+..
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444544444444444444444433
No 340
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.18 E-value=38 Score=32.81 Aligned_cols=8 Identities=0% Similarity=0.214 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 002710 604 QQRLSAAE 611 (890)
Q Consensus 604 ~~~l~~l~ 611 (890)
+.++..++
T Consensus 99 e~el~~l~ 106 (206)
T PRK10884 99 ENQVKTLT 106 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 341
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=80.75 E-value=0.59 Score=45.04 Aligned_cols=19 Identities=37% Similarity=1.079 Sum_probs=15.6
Q ss_pred ccccCCCcccHHHHHHHhc
Q 002710 849 VITKCFHLFCNPCIQRNLE 867 (890)
Q Consensus 849 ~~~~CgH~fC~~C~~~~~~ 867 (890)
.++.|+|+||..|......
T Consensus 19 ~LTaC~HvfC~~C~k~~~~ 37 (233)
T KOG4739|consen 19 FLTACRHVFCEPCLKASSP 37 (233)
T ss_pred eeeechhhhhhhhcccCCc
Confidence 5669999999999986633
No 342
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=80.73 E-value=1.6e+02 Score=36.92 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=10.8
Q ss_pred CCccCCCcCcCCCCc
Q 002710 871 RKCPGCGTAFGQSDV 885 (890)
Q Consensus 871 ~~CP~C~~~~~~~d~ 885 (890)
..+-++..||+.-|+
T Consensus 976 ~~~l~lDEp~~~lD~ 990 (1047)
T PRK10246 976 IDSLFLDEGFGTLDS 990 (1047)
T ss_pred CCEEEEeCCCCcCCH
Confidence 456778888887664
No 343
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.61 E-value=46 Score=30.47 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 002710 795 ERKKLEEELMEVNNK 809 (890)
Q Consensus 795 ~~~~l~~e~~~l~~~ 809 (890)
++.+.+.+++.++.+
T Consensus 134 e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 134 ELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 344
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=80.59 E-value=1.9 Score=45.07 Aligned_cols=46 Identities=13% Similarity=0.312 Sum_probs=31.4
Q ss_pred HHHHHHHHhHhccc---Cccccccccccc----CCcccccCCCcccHHHHHHH
Q 002710 820 AAIQKLQDEIKDCK---AILKCGVCFDRP----KEVVITKCFHLFCNPCIQRN 865 (890)
Q Consensus 820 ~~~~~l~~e~~~~~---~~l~C~iC~~~~----~~~~~~~CgH~fC~~C~~~~ 865 (890)
..+..+...+--+. ....||+|...| +...+.-||-+.|..|..-.
T Consensus 162 ~k~k~~EqsvVpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~i 214 (505)
T KOG1842|consen 162 VKRKRLEQSVVPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFI 214 (505)
T ss_pred HHHHHHHhccccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhc
Confidence 44444544433322 336999999998 33566679999999998755
No 345
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=80.54 E-value=65 Score=32.11 Aligned_cols=69 Identities=9% Similarity=0.237 Sum_probs=31.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHhHhcc
Q 002710 764 LKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGE-AAIQKLQDEIKDC 832 (890)
Q Consensus 764 ~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~-~~~~~l~~e~~~~ 832 (890)
+-.+.+.+..++..++............-.....+.-.+++.++.++++-++.... +.+.++...+..+
T Consensus 278 l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKL 347 (384)
T KOG0972|consen 278 LMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKL 347 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHH
Confidence 33333333333444443333333333333334445555566666666665555443 3444444444433
No 346
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=80.30 E-value=0.95 Score=38.25 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=9.7
Q ss_pred CcccccccccccCC
Q 002710 834 AILKCGVCFDRPKE 847 (890)
Q Consensus 834 ~~l~C~iC~~~~~~ 847 (890)
....|+-|+.+|++
T Consensus 8 tKR~Cp~CG~kFYD 21 (108)
T PF09538_consen 8 TKRTCPSCGAKFYD 21 (108)
T ss_pred CcccCCCCcchhcc
Confidence 34578888887765
No 347
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=79.89 E-value=0.56 Score=53.55 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=0.0
Q ss_pred cccccccccccCCcccccCC-Cc----ccHHHHHHHhccCCCCccCCCcCcCCCC
Q 002710 835 ILKCGVCFDRPKEVVITKCF-HL----FCNPCIQRNLEIRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~Cg-H~----fC~~C~~~~~~~~~~~CP~C~~~~~~~d 884 (890)
...||-|...-....+-.|| || +|..|-... ....||.|+..+....
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~---~~~~C~~C~~~~~~~~ 706 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEV---EEDECPKCGRETTSYS 706 (900)
T ss_dssp -------------------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCccccceecccccccc---CccccccccccCcccc
Confidence 35899999876666666799 53 799998766 4558999998877543
No 348
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=79.82 E-value=0.67 Score=33.69 Aligned_cols=12 Identities=33% Similarity=0.947 Sum_probs=5.9
Q ss_pred CccCCCcCcCCC
Q 002710 872 KCPGCGTAFGQS 883 (890)
Q Consensus 872 ~CP~C~~~~~~~ 883 (890)
.||.|+.+|+..
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 788888888753
No 349
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.74 E-value=1.1e+02 Score=34.25 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 002710 671 AERDDLNIKLVSESVKTKQVQSFLLSEKQALA 702 (890)
Q Consensus 671 ~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~ 702 (890)
..++..--+|+.++..++=.+..++.+....+
T Consensus 170 tsLETqKlDLmaevSeLKLkltalEkeq~e~E 201 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLTALEKEQNETE 201 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHH
Confidence 34444444444444444444444443333333
No 350
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=79.73 E-value=1.1 Score=53.19 Aligned_cols=46 Identities=28% Similarity=0.613 Sum_probs=35.8
Q ss_pred ccccccccccCC-------cccccCCCcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 836 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 836 l~C~iC~~~~~~-------~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
-.|.||++...- +.+--||-..|.+|..=-.+.++..||.|+..+.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 579999987522 4445788889999997666667778999999987
No 351
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.61 E-value=59 Score=33.58 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 788 ELENERNERKKLEEELMEVNNKVAE 812 (890)
Q Consensus 788 ~l~~~~~~~~~l~~e~~~l~~~l~~ 812 (890)
.+..+-.+...|..++..++..++.
T Consensus 220 RLkKl~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 220 RLKKLADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555544
No 352
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.61 E-value=0.78 Score=49.23 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=29.1
Q ss_pred cCccccccccccc-----CCcccccCCCcccHHHHHHHhccCCCCccC
Q 002710 833 KAILKCGVCFDRP-----KEVVITKCFHLFCNPCIQRNLEIRHRKCPG 875 (890)
Q Consensus 833 ~~~l~C~iC~~~~-----~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~ 875 (890)
..+..||.|.-.+ -++++-.|||-||..|.-.|.. .+..|+.
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~-~~~~~~~ 350 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKT-HNGECYE 350 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhh-CCccccC
Confidence 3457799988654 2255556999999999988865 4444544
No 353
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=79.17 E-value=76 Score=32.13 Aligned_cols=6 Identities=17% Similarity=0.307 Sum_probs=2.4
Q ss_pred cccccC
Q 002710 848 VVITKC 853 (890)
Q Consensus 848 ~~~~~C 853 (890)
|+.-||
T Consensus 341 pe~~~~ 346 (391)
T KOG1850|consen 341 PESKPC 346 (391)
T ss_pred cccccc
Confidence 333333
No 354
>PRK12495 hypothetical protein; Provisional
Probab=79.03 E-value=2.8 Score=39.71 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=8.5
Q ss_pred ccccccccccC
Q 002710 836 LKCGVCFDRPK 846 (890)
Q Consensus 836 l~C~iC~~~~~ 846 (890)
..|+.|+.++.
T Consensus 43 ~hC~~CG~PIp 53 (226)
T PRK12495 43 AHCDECGDPIF 53 (226)
T ss_pred hhcccccCccc
Confidence 67999987655
No 355
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=79.03 E-value=2.1 Score=27.66 Aligned_cols=26 Identities=23% Similarity=0.908 Sum_probs=16.0
Q ss_pred ccHHHHHHHhccCCC-------CccCCCcCcCC
Q 002710 857 FCNPCIQRNLEIRHR-------KCPGCGTAFGQ 882 (890)
Q Consensus 857 fC~~C~~~~~~~~~~-------~CP~C~~~~~~ 882 (890)
+|..|...+.+..+| .||.||-.++-
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CGPr~~i 33 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCGPRYSI 33 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC-SCCC
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCCCCEEE
Confidence 488888887654333 49999987763
No 356
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=78.73 E-value=1.2 Score=31.17 Aligned_cols=39 Identities=28% Similarity=0.736 Sum_probs=23.7
Q ss_pred ccccccccCC--cccccCCCc-----ccHHHHHHHhcc-CCCCccCC
Q 002710 838 CGVCFDRPKE--VVITKCFHL-----FCNPCIQRNLEI-RHRKCPGC 876 (890)
Q Consensus 838 C~iC~~~~~~--~~~~~CgH~-----fC~~C~~~~~~~-~~~~CP~C 876 (890)
|-||++.... +.+.||+=. .=..|+..|+.. +..+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6688877543 567788622 246699999985 45569998
No 357
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=78.65 E-value=1.2 Score=43.68 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=10.9
Q ss_pred ccccccccccCCcccc
Q 002710 836 LKCGVCFDRPKEVVIT 851 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~ 851 (890)
..|.||++.|..|-+|
T Consensus 188 c~C~iCGKaFSRPWLL 203 (279)
T KOG2462|consen 188 CECGICGKAFSRPWLL 203 (279)
T ss_pred cccccccccccchHHh
Confidence 5677887777765444
No 358
>PLN02400 cellulose synthase
Probab=78.56 E-value=1 Score=53.48 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=34.9
Q ss_pred ccccccccccCC-------cccccCCCcccHHHHHHHhccCCCCccCCCcCcC
Q 002710 836 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 881 (890)
Q Consensus 836 l~C~iC~~~~~~-------~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~ 881 (890)
-.|.||++...- +.+--||-..|.+|..=--+.++..||.|+..+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 489999987522 4445788889999996555556667999999887
No 359
>PF15616 TerY-C: TerY-C metal binding domain
Probab=78.55 E-value=0.77 Score=39.99 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=30.8
Q ss_pred ccCcccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 832 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 832 ~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
|...-.||-|...+-=.+. .||++||..=- ....||-|+....-
T Consensus 74 L~g~PgCP~CGn~~~fa~C-~CGkl~Ci~g~------~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAFAVC-GCGKLFCIDGE------GEVTCPWCGNEGSF 117 (131)
T ss_pred hcCCCCCCCCcChhcEEEe-cCCCEEEeCCC------CCEECCCCCCeeee
Confidence 3344789999976654444 89999995431 35679999976543
No 360
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.42 E-value=90 Score=32.52 Aligned_cols=11 Identities=9% Similarity=-0.025 Sum_probs=5.8
Q ss_pred ccccccccccC
Q 002710 836 LKCGVCFDRPK 846 (890)
Q Consensus 836 l~C~iC~~~~~ 846 (890)
..++||+-++.
T Consensus 174 ~~~~I~~~~lp 184 (302)
T PF10186_consen 174 SEYTICGLPLP 184 (302)
T ss_pred CCeeecCcccC
Confidence 44556754443
No 361
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.36 E-value=1.1 Score=49.71 Aligned_cols=38 Identities=24% Similarity=0.527 Sum_probs=28.6
Q ss_pred CcccccCCCcccHHHHHHHhcc-------------------------CCCCccCCCcCcCCCC
Q 002710 847 EVVITKCFHLFCNPCIQRNLEI-------------------------RHRKCPGCGTAFGQSD 884 (890)
Q Consensus 847 ~~~~~~CgH~fC~~C~~~~~~~-------------------------~~~~CP~C~~~~~~~d 884 (890)
.+|.-.|||.||..|...|+.. ....||.|-.++..+.
T Consensus 178 ~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek~~ 240 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEKDG 240 (444)
T ss_pred cceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhccC
Confidence 3667799999999998877642 3345999988877654
No 362
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.34 E-value=12 Score=35.01 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 002710 795 ERKKLEEELMEVNNKVAELTS 815 (890)
Q Consensus 795 ~~~~l~~e~~~l~~~l~~l~~ 815 (890)
.+..+..++..+..++..|..
T Consensus 117 ~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 117 EIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555555555544
No 363
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=78.30 E-value=56 Score=30.06 Aligned_cols=7 Identities=14% Similarity=0.453 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002710 722 AEEQMKA 728 (890)
Q Consensus 722 l~~~~~~ 728 (890)
++..+..
T Consensus 110 LErrl~~ 116 (159)
T PF05384_consen 110 LERRLRN 116 (159)
T ss_pred HHHHHHH
Confidence 3333333
No 364
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=78.21 E-value=1.2e+02 Score=33.91 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002710 780 RKTEDMRKELENERNERKKLEEE 802 (890)
Q Consensus 780 ~~l~~l~~~l~~~~~~~~~l~~e 802 (890)
.++.....++..++..+..++..
T Consensus 291 ~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 291 QEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444333333
No 365
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=77.76 E-value=1 Score=45.11 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=13.7
Q ss_pred cccccccccCCcccccCCCcccHHHH
Q 002710 837 KCGVCFDRPKEVVITKCFHLFCNPCI 862 (890)
Q Consensus 837 ~C~iC~~~~~~~~~~~CgH~fC~~C~ 862 (890)
-||||++..... .-|-.-|.+|.
T Consensus 17 lCPVCGDkVSGY---HYGLLTCESCK 39 (475)
T KOG4218|consen 17 LCPVCGDKVSGY---HYGLLTCESCK 39 (475)
T ss_pred ccccccCccccc---eeeeeehhhhh
Confidence 599999887652 12333456663
No 366
>PF12773 DZR: Double zinc ribbon
Probab=77.71 E-value=2.1 Score=30.53 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=22.5
Q ss_pred ccccccccCCcccccCCCcccHHHHHHHh--ccCCCCccCCCcCcCCCC
Q 002710 838 CGVCFDRPKEVVITKCFHLFCNPCIQRNL--EIRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 838 C~iC~~~~~~~~~~~CgH~fC~~C~~~~~--~~~~~~CP~C~~~~~~~d 884 (890)
|+-|...... +-.||..|=.... ......||.|+..+..+.
T Consensus 1 Cp~Cg~~~~~------~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~ 43 (50)
T PF12773_consen 1 CPHCGTPNPD------DAKFCPHCGTPLPPPDQSKKICPNCGAENPPNA 43 (50)
T ss_pred CCCcCCcCCc------cccCChhhcCChhhccCCCCCCcCCcCCCcCCc
Confidence 5556554332 3445666655544 223456888888766543
No 367
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=77.46 E-value=0.52 Score=32.06 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=17.9
Q ss_pred ccccCCCcccHHHHHHHhccCCCCccCCCc
Q 002710 849 VITKCFHLFCNPCIQRNLEIRHRKCPGCGT 878 (890)
Q Consensus 849 ~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~ 878 (890)
....|||.|-.-.--.- .....||.||.
T Consensus 7 ~C~~Cg~~fe~~~~~~~--~~~~~CP~Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQSISE--DDPVPCPECGS 34 (42)
T ss_pred EeCCCCCEEEEEEEcCC--CCCCcCCCCCC
Confidence 34578888865542222 24567999987
No 368
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=77.06 E-value=1e+02 Score=32.58 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 614 IIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLL 667 (890)
Q Consensus 614 l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~ 667 (890)
+.+++.++.+.......+..+......+...+.+.+...+..+..++.++.++.
T Consensus 15 ~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 15 LIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444444444444444444444444433
No 369
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=77.02 E-value=1.3 Score=37.77 Aligned_cols=28 Identities=11% Similarity=-0.134 Sum_probs=17.8
Q ss_pred cCcccccccccccCC----c-ccccCCCcccHH
Q 002710 833 KAILKCGVCFDRPKE----V-VITKCFHLFCNP 860 (890)
Q Consensus 833 ~~~l~C~iC~~~~~~----~-~~~~CgH~fC~~ 860 (890)
-....||-|+.+|++ | |+.+||+.|=..
T Consensus 7 GtKr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 7 GTKRICPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred CccccCCCcCccccccCCCCccCCCcCCccCcc
Confidence 344679999988865 3 333677766433
No 370
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=76.39 E-value=78 Score=30.77 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 002710 798 KLEEELMEVNNK 809 (890)
Q Consensus 798 ~l~~e~~~l~~~ 809 (890)
+|..+...++..
T Consensus 168 RLkdEardlrqe 179 (333)
T KOG1853|consen 168 RLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHH
Confidence 333443333333
No 371
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=76.24 E-value=1.8 Score=31.00 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=9.4
Q ss_pred CCCccCCCcCcCC
Q 002710 870 HRKCPGCGTAFGQ 882 (890)
Q Consensus 870 ~~~CP~C~~~~~~ 882 (890)
...||.||.|+--
T Consensus 14 ~~~Cp~cGipthc 26 (55)
T PF13824_consen 14 NFECPDCGIPTHC 26 (55)
T ss_pred CCcCCCCCCcCcc
Confidence 4568888887754
No 372
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=75.93 E-value=2.6 Score=30.12 Aligned_cols=42 Identities=33% Similarity=0.677 Sum_probs=31.4
Q ss_pred ccccccccccC--C--cccccCCCcccHHHHHHHhccCCCCccC--CCcCcCC
Q 002710 836 LKCGVCFDRPK--E--VVITKCFHLFCNPCIQRNLEIRHRKCPG--CGTAFGQ 882 (890)
Q Consensus 836 l~C~iC~~~~~--~--~~~~~CgH~fC~~C~~~~~~~~~~~CP~--C~~~~~~ 882 (890)
-.|++|.+.|+ + +|...||=.+=..|.. +...|-. |+.+|.-
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~-----~~g~C~~~~c~~~~~~ 53 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE-----KAGGCINYSCGTGFEW 53 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh-----hCCceEeccCCCCccc
Confidence 57999999995 3 4555899888888876 4566877 8887753
No 373
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.85 E-value=1.7 Score=31.82 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=11.1
Q ss_pred CCCccCCCcCcCCCC
Q 002710 870 HRKCPGCGTAFGQSD 884 (890)
Q Consensus 870 ~~~CP~C~~~~~~~d 884 (890)
.++||+|++++.-..
T Consensus 7 ~v~CP~Cgkpv~w~~ 21 (65)
T COG3024 7 TVPCPTCGKPVVWGE 21 (65)
T ss_pred cccCCCCCCcccccc
Confidence 567999998877543
No 374
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=75.74 E-value=1.4e+02 Score=33.20 Aligned_cols=228 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred CccCCCCCCCCCCccccchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHh
Q 002710 32 PTMARNTPSSPSSNKSVDSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGV 111 (890)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~ 111 (890)
|.|.++||..-..+..+ +..-..-...|.+++.....++..|+.+.+...-+..-..-.+..=+..|.++...+.....
T Consensus 280 p~~~svpy~~a~~n~ri-l~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v 358 (518)
T PF10212_consen 280 PCPESVPYEEALANRRI-LLSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQV 358 (518)
T ss_pred CCCccCChHHHHhhhHH-HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q ss_pred hcCCCCCC--cccCCCcCcCCCCCCCCCChhHHHHHHhhhccccCCCcccchHHH-HHHHHhhHHHHHHHHHHHHHHHHH
Q 002710 112 RAGGGSNV--LQKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYV-EEALASRHSSARELMKFIEEVIDA 188 (890)
Q Consensus 112 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~l~~~~~~~~~ 188 (890)
........ ....+.+..........+....-+...+.........+....+.. ......|...+-..+.....+...
T Consensus 359 ~~s~~e~~~l~~~~e~~se~s~~~~~e~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~ 438 (518)
T PF10212_consen 359 AESSQESSVLSEASEQQSEASSQSVDEPLQPTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVH 438 (518)
T ss_pred ccchhhhhhhcccccccccccccccccccccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 002710 189 QRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEI----IHLKHKEYADQIENYISSHSVDQAEIQHLA 263 (890)
Q Consensus 189 ~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~l~~----~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~ 263 (890)
...+-..+...+.. .+.....+...+..+...+..++.++.. .+.++..+...+..+.+++.....+|+.++
T Consensus 439 f~~Ec~aL~~rL~~---aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 439 FYAECRALQKRLES---AEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 375
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=75.24 E-value=85 Score=30.64 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 002710 607 LSAAEAEIIELVAKLD 622 (890)
Q Consensus 607 l~~l~~el~~l~~~~~ 622 (890)
+..-+.++.++...+.
T Consensus 138 lA~kEQEmqe~~sqi~ 153 (330)
T KOG2991|consen 138 LATKEQEMQECTSQIQ 153 (330)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 376
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=75.17 E-value=0.88 Score=51.71 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=33.2
Q ss_pred ccccccccccCC--cccccCCCcccHHHHHHHhcc-----CCCCccCCCcCcC
Q 002710 836 LKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEI-----RHRKCPGCGTAFG 881 (890)
Q Consensus 836 l~C~iC~~~~~~--~~~~~CgH~fC~~C~~~~~~~-----~~~~CP~C~~~~~ 881 (890)
--|..|.....+ -++..|||.||..|+..|.-. ...+||+|+..-.
T Consensus 230 ~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 230 EMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCN 282 (889)
T ss_pred hhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcC
Confidence 469999987766 466799999999999999521 1224887664443
No 377
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=74.77 E-value=13 Score=31.47 Aligned_cols=10 Identities=10% Similarity=0.042 Sum_probs=5.6
Q ss_pred ccccccCCcc
Q 002710 840 VCFDRPKEVV 849 (890)
Q Consensus 840 iC~~~~~~~~ 849 (890)
||...|..+.
T Consensus 88 ICn~~yG~~R 97 (107)
T PF06156_consen 88 ICNVHYGSRR 97 (107)
T ss_pred eCcHHhCCcC
Confidence 5666665544
No 378
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=74.71 E-value=3.5 Score=38.03 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=21.9
Q ss_pred cccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCC
Q 002710 835 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 884 (890)
.+.||.|+..|.- . ..+. .+..||.||.++..-|
T Consensus 109 ~Y~Cp~c~~r~tf------------~---eA~~-~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 109 FFICPNMCVRFTF------------N---EAME-LNFTCPRCGAMLDYLD 142 (158)
T ss_pred eEECCCCCcEeeH------------H---HHHH-cCCcCCCCCCEeeecc
Confidence 4678888766642 1 1111 3788999999876544
No 379
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=74.51 E-value=63 Score=29.27 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=19.9
Q ss_pred CCcccccCCCcccHHHHHHHhccCCCCccCCCcC
Q 002710 846 KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 879 (890)
Q Consensus 846 ~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~ 879 (890)
...++..|||..+..=- ..-+.||.|+..
T Consensus 111 G~l~C~~Cg~~~~~~~~-----~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 111 GTLVCENCGHEVELTHP-----ERLPPCPKCGHT 139 (146)
T ss_pred ceEecccCCCEEEecCC-----CcCCCCCCCCCC
Confidence 34577789998776522 256679999854
No 380
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=74.02 E-value=3.3 Score=38.99 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=22.3
Q ss_pred cccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCC
Q 002710 835 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 884 (890)
.+.||.|+..|.- . ..+. .+..||.||.++..-|
T Consensus 117 ~Y~Cp~C~~rytf------------~---eA~~-~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 117 FFFCPNCHIRFTF------------D---EAME-YGFRCPQCGEMLEEYD 150 (178)
T ss_pred EEECCCCCcEEeH------------H---HHhh-cCCcCCCCCCCCeecc
Confidence 4778888766642 1 1112 4788999999876544
No 381
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=73.53 E-value=1.3 Score=38.35 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=24.7
Q ss_pred ccccccccccCCcccccCCCccc-HHHHHHHhcc
Q 002710 836 LKCGVCFDRPKEVVITKCFHLFC-NPCIQRNLEI 868 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~fC-~~C~~~~~~~ 868 (890)
-.|.||+ .+.-..++.||-.|| -.|...+-.+
T Consensus 119 ~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~HneT 151 (156)
T KOG3362|consen 119 KFCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNET 151 (156)
T ss_pred hhhhhcC-CCchhHHHhcCCceeechhhhhcccc
Confidence 4899999 777778889999996 4687766443
No 382
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.30 E-value=8.2 Score=32.99 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=12.5
Q ss_pred Ccccccccccc-cCCcccccCCCc
Q 002710 834 AILKCGVCFDR-PKEVVITKCFHL 856 (890)
Q Consensus 834 ~~l~C~iC~~~-~~~~~~~~CgH~ 856 (890)
...+|.||... |.+ -|||.
T Consensus 64 ddatC~IC~KTKFAD----G~GH~ 83 (169)
T KOG3799|consen 64 DDATCGICHKTKFAD----GCGHN 83 (169)
T ss_pred cCcchhhhhhccccc----ccCcc
Confidence 34789999975 444 35663
No 383
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=73.20 E-value=1.7 Score=30.89 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=18.4
Q ss_pred cccccccccCCcccccCCCcccHH
Q 002710 837 KCGVCFDRPKEVVITKCFHLFCNP 860 (890)
Q Consensus 837 ~C~iC~~~~~~~~~~~CgH~fC~~ 860 (890)
.|..|.....--+.+.|||++|..
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCC
Confidence 488888666556788999999943
No 384
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=73.06 E-value=1.5 Score=28.91 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=9.5
Q ss_pred ccccccccccCCc
Q 002710 836 LKCGVCFDRPKEV 848 (890)
Q Consensus 836 l~C~iC~~~~~~~ 848 (890)
+.||-|...|.-+
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 5788888877643
No 385
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=72.95 E-value=4.3 Score=37.69 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=22.4
Q ss_pred cccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCc
Q 002710 835 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 885 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 885 (890)
.+.||.|+-++. |=..|- -+..||.||......|-
T Consensus 113 ~y~C~~~~~r~s----------fdeA~~------~~F~Cp~Cg~~L~~~d~ 147 (176)
T COG1675 113 YYVCPNCHVKYS----------FDEAME------LGFTCPKCGEDLEEYDS 147 (176)
T ss_pred ceeCCCCCCccc----------HHHHHH------hCCCCCCCCchhhhccc
Confidence 477887776554 212222 35789999998876653
No 386
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=72.78 E-value=80 Score=29.24 Aligned_cols=76 Identities=16% Similarity=0.098 Sum_probs=55.1
Q ss_pred CCCCCCCCccccchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHhh
Q 002710 37 NTPSSPSSNKSVDSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVR 112 (890)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~~ 112 (890)
.||++.......++..+-..+..|.+++....+.+..|+..+.............+..++..+..+...+......
T Consensus 9 ~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 9 LPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444455667788888888889999988877777777777777777777777777777766666666666655444
No 387
>PRK05978 hypothetical protein; Provisional
Probab=72.70 E-value=2.4 Score=38.06 Aligned_cols=32 Identities=28% Similarity=0.636 Sum_probs=22.9
Q ss_pred ccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCC
Q 002710 836 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 883 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 883 (890)
..||-|.+ ||+| ..+++ -...||.|+..|...
T Consensus 34 grCP~CG~----------G~LF-----~g~Lk-v~~~C~~CG~~~~~~ 65 (148)
T PRK05978 34 GRCPACGE----------GKLF-----RAFLK-PVDHCAACGEDFTHH 65 (148)
T ss_pred CcCCCCCC----------Cccc-----ccccc-cCCCccccCCccccC
Confidence 57888875 5666 24555 456799999999865
No 388
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=72.50 E-value=1.1e+02 Score=30.66 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 002710 795 ERKKLEEELMEVNNKVAELT 814 (890)
Q Consensus 795 ~~~~l~~e~~~l~~~l~~l~ 814 (890)
.+..++..+..++..+....
T Consensus 193 ~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 193 RIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 389
>PRK01343 zinc-binding protein; Provisional
Probab=72.48 E-value=2.6 Score=30.52 Aligned_cols=14 Identities=36% Similarity=0.888 Sum_probs=9.3
Q ss_pred CCCCccCCCcCcCC
Q 002710 869 RHRKCPGCGTAFGQ 882 (890)
Q Consensus 869 ~~~~CP~C~~~~~~ 882 (890)
+...||+|+++|..
T Consensus 8 p~~~CP~C~k~~~~ 21 (57)
T PRK01343 8 PTRPCPECGKPSTR 21 (57)
T ss_pred CCCcCCCCCCcCcC
Confidence 34568888877653
No 390
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=72.44 E-value=2 Score=27.64 Aligned_cols=10 Identities=50% Similarity=1.202 Sum_probs=7.8
Q ss_pred CCCccCCCcC
Q 002710 870 HRKCPGCGTA 879 (890)
Q Consensus 870 ~~~CP~C~~~ 879 (890)
...||+|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3579999975
No 391
>PRK10869 recombination and repair protein; Provisional
Probab=72.33 E-value=1.9e+02 Score=33.29 Aligned_cols=11 Identities=9% Similarity=-0.333 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q 002710 572 RAHSQAEVLKN 582 (890)
Q Consensus 572 ~~~~~~~~l~~ 582 (890)
.+...+..+..
T Consensus 161 ~~y~~~~~~~~ 171 (553)
T PRK10869 161 AAYQLWHQSCR 171 (553)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 392
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.25 E-value=2 Score=28.60 Aligned_cols=13 Identities=38% Similarity=1.009 Sum_probs=10.8
Q ss_pred CCCCccCCCcCcC
Q 002710 869 RHRKCPGCGTAFG 881 (890)
Q Consensus 869 ~~~~CP~C~~~~~ 881 (890)
+...||+|+.+|+
T Consensus 7 p~K~C~~C~rpf~ 19 (42)
T PF10013_consen 7 PSKICPVCGRPFT 19 (42)
T ss_pred CCCcCcccCCcch
Confidence 4567999999996
No 393
>PRK11827 hypothetical protein; Provisional
Probab=71.97 E-value=1.8 Score=31.86 Aligned_cols=42 Identities=21% Similarity=0.116 Sum_probs=28.1
Q ss_pred ccCcccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcccccC
Q 002710 832 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 890 (890)
Q Consensus 832 ~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 890 (890)
+...+.||+|...+.-.. + ...-.|+.|+..|-..|-+||.|
T Consensus 5 LLeILaCP~ckg~L~~~~----~-------------~~~Lic~~~~laYPI~dgIPVlL 46 (60)
T PRK11827 5 LLEIIACPVCNGKLWYNQ----E-------------KQELICKLDNLAFPLRDGIPVLL 46 (60)
T ss_pred HHhheECCCCCCcCeEcC----C-------------CCeEECCccCeeccccCCccccC
Confidence 445689999987654100 0 01234999999999888888764
No 394
>PRK00420 hypothetical protein; Validated
Probab=71.80 E-value=1.4 Score=37.32 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=8.1
Q ss_pred ccccccccccC
Q 002710 836 LKCGVCFDRPK 846 (890)
Q Consensus 836 l~C~iC~~~~~ 846 (890)
-.||+|+.++.
T Consensus 24 ~~CP~Cg~pLf 34 (112)
T PRK00420 24 KHCPVCGLPLF 34 (112)
T ss_pred CCCCCCCCcce
Confidence 57999986554
No 395
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=71.75 E-value=1.7 Score=28.36 Aligned_cols=12 Identities=17% Similarity=0.481 Sum_probs=8.6
Q ss_pred ccccccccccCC
Q 002710 836 LKCGVCFDRPKE 847 (890)
Q Consensus 836 l~C~iC~~~~~~ 847 (890)
+.||-|...|.-
T Consensus 3 i~Cp~C~~~y~i 14 (36)
T PF13717_consen 3 ITCPNCQAKYEI 14 (36)
T ss_pred EECCCCCCEEeC
Confidence 578888877743
No 396
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=71.52 E-value=1.7 Score=42.48 Aligned_cols=46 Identities=20% Similarity=0.428 Sum_probs=30.9
Q ss_pred cCcccccccccccCCcccc----cCCCcc--cHHHHHHHhccCCCCccCCCcC
Q 002710 833 KAILKCGVCFDRPKEVVIT----KCFHLF--CNPCIQRNLEIRHRKCPGCGTA 879 (890)
Q Consensus 833 ~~~l~C~iC~~~~~~~~~~----~CgH~f--C~~C~~~~~~~~~~~CP~C~~~ 879 (890)
.....||+|+..+...++. .=|-.| |+-|...|..- ..||-.|+..
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~V-R~KC~nC~~t 234 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYV-RVKCSNCEQS 234 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHH-HHHhcccccc
Confidence 4456899999887653332 123334 99999999873 4468888653
No 397
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=71.49 E-value=1.7e+02 Score=32.53 Aligned_cols=18 Identities=6% Similarity=0.104 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 002710 798 KLEEELMEVNNKVAELTS 815 (890)
Q Consensus 798 ~l~~e~~~l~~~l~~l~~ 815 (890)
.++.+++..+..+..+-.
T Consensus 346 ~L~r~~~~~~~~y~~ll~ 363 (444)
T TIGR03017 346 VLQRDVENAQRAYDAAMQ 363 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 398
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=71.42 E-value=2 Score=42.07 Aligned_cols=45 Identities=22% Similarity=0.511 Sum_probs=26.8
Q ss_pred hHhcccCcccccccccccCCcccccCCCcccHHHHHHH-hcc-CCCCccCCCcCcC
Q 002710 828 EIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRN-LEI-RHRKCPGCGTAFG 881 (890)
Q Consensus 828 e~~~~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~-~~~-~~~~CP~C~~~~~ 881 (890)
+-...-..+.|+-|...- -++.|| |...- +.. ...-||.|+.+|.
T Consensus 299 qaa~pa~t~~~~r~~k~n---fc~ncG------~~~t~~~~ng~a~fcp~cgq~~~ 345 (345)
T COG4260 299 QAAAPAATWPCARCAKLN---FCLNCG------CGTTADFDNGKAKFCPECGQGFV 345 (345)
T ss_pred hhcCCcccCcchhccccc---cccccC------cccccCCccchhhhChhhcCCCC
Confidence 334445668999997654 455666 33322 221 2234999999874
No 399
>PHA02768 hypothetical protein; Provisional
Probab=71.11 E-value=1.5 Score=31.58 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=24.9
Q ss_pred ccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCC
Q 002710 836 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 883 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 883 (890)
+.|+.|+..|...-.+. +|. ..+. ...+|+.|++.|...
T Consensus 6 y~C~~CGK~Fs~~~~L~-~H~-------r~H~-k~~kc~~C~k~f~~~ 44 (55)
T PHA02768 6 YECPICGEIYIKRKSMI-THL-------RKHN-TNLKLSNCKRISLRT 44 (55)
T ss_pred cCcchhCCeeccHHHHH-HHH-------HhcC-CcccCCcccceeccc
Confidence 58999999987643321 121 1111 356899999999854
No 400
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.00 E-value=2.5 Score=47.08 Aligned_cols=39 Identities=23% Similarity=0.521 Sum_probs=29.3
Q ss_pred cccccccccCC----cccccCCCcccHHHHHHHhccCCCCccCCCcC
Q 002710 837 KCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 879 (890)
Q Consensus 837 ~C~iC~~~~~~----~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~ 879 (890)
+|-+|..+-.. +.++.|+-+||..|...+ ...||+|+..
T Consensus 656 ~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~----~~~~~vC~~~ 698 (717)
T KOG3726|consen 656 TCKVCQLPEDSETDVCRTTFCYTPYCVACSLDY----ASISEVCGPD 698 (717)
T ss_pred HHHHhcCCcCccccccCccccCCcchHhhhhhh----hccCcccCch
Confidence 68889866542 556689999999998876 3349999853
No 401
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.98 E-value=0.75 Score=43.40 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=11.0
Q ss_pred cccccccccccCC
Q 002710 835 ILKCGVCFDRPKE 847 (890)
Q Consensus 835 ~l~C~iC~~~~~~ 847 (890)
.+.||||...|..
T Consensus 19 ~ieCPvC~tkFkk 31 (267)
T COG1655 19 TIECPVCNTKFKK 31 (267)
T ss_pred eeccCcccchhhh
Confidence 5899999998865
No 402
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=68.89 E-value=3 Score=47.89 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=14.8
Q ss_pred ccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 857 FCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 857 fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
+|..|=...-. ..+.||.||.+++.
T Consensus 29 ~Cp~CG~~~~~-~~~fC~~CG~~~~~ 53 (645)
T PRK14559 29 PCPQCGTEVPV-DEAHCPNCGAETGT 53 (645)
T ss_pred cCCCCCCCCCc-ccccccccCCcccc
Confidence 46666544322 55668888776653
No 403
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=68.77 E-value=1.4 Score=35.53 Aligned_cols=37 Identities=30% Similarity=0.550 Sum_probs=23.0
Q ss_pred cccccccccCCcc-----------cccCCCcccHHHHHHHhccCCCCccCCCcCc
Q 002710 837 KCGVCFDRPKEVV-----------ITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 880 (890)
Q Consensus 837 ~C~iC~~~~~~~~-----------~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 880 (890)
.|+.|....-+.. .+|+|=++|.-+ +.++|+.|+..|
T Consensus 51 gCp~CrvG~le~~ft~~Gi~~AI~fFPiGilcc~~~-------r~~rC~nCG~~f 98 (98)
T PF10164_consen 51 GCPACRVGVLEDSFTCCGILCAIFFFPIGILCCLAM-------RERRCSNCGATF 98 (98)
T ss_pred CCCCCceeeecccccHHHHHHHHHHHhhHHHHhhhc-------CccccCCCCccC
Confidence 6888876543322 224554444433 788999999876
No 404
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=68.71 E-value=2.5 Score=43.44 Aligned_cols=32 Identities=19% Similarity=0.497 Sum_probs=24.5
Q ss_pred CcccccccccccCC--cccccCCCcccHHHHHHH
Q 002710 834 AILKCGVCFDRPKE--VVITKCFHLFCNPCIQRN 865 (890)
Q Consensus 834 ~~l~C~iC~~~~~~--~~~~~CgH~fC~~C~~~~ 865 (890)
....||||+-.|.. ..+.-|..++|..|.-.+
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPF 106 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecc
Confidence 34789999988765 345568899999998655
No 405
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.47 E-value=3.3 Score=34.91 Aligned_cols=41 Identities=29% Similarity=0.485 Sum_probs=31.4
Q ss_pred ccccccccccCCc--------------ccccCCCcccHHHHHHHhccCCCCccCCC
Q 002710 836 LKCGVCFDRPKEV--------------VITKCFHLFCNPCIQRNLEIRHRKCPGCG 877 (890)
Q Consensus 836 l~C~iC~~~~~~~--------------~~~~CgH~fC~~C~~~~~~~~~~~CP~C~ 877 (890)
..|--|...|..+ ....|++.||.+|=--+.. .-..||.|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe-~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE-SLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh-hccCCcCCC
Confidence 4599999888653 1558999999999666655 466799996
No 406
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.36 E-value=76 Score=27.17 Aligned_cols=33 Identities=6% Similarity=0.105 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCC
Q 002710 525 QMAEIKSLKALIEKLQKDKLESQIMLDMYGQEG 557 (890)
Q Consensus 525 ~~~el~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 557 (890)
+..++..+..++..+...+.+....++.+....
T Consensus 15 ~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~ 47 (110)
T TIGR02338 15 LQQQLQAVATQKQQVEAQLKEAEKALEELERLP 47 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444444555555555555555555555443
No 407
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=67.50 E-value=1.7 Score=43.45 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=0.0
Q ss_pred ccccccccccCC--------------------cccccCCCcccHHHHHHHhccCCCCccCCCcCc
Q 002710 836 LKCGVCFDRPKE--------------------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 880 (890)
Q Consensus 836 l~C~iC~~~~~~--------------------~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 880 (890)
..||||.-..-. |....=|-.||+.|-..........||.|...|
T Consensus 291 ~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~F 355 (378)
T KOG2807|consen 291 IECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVF 355 (378)
T ss_pred ccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchhcccee
No 408
>PLN03086 PRLI-interacting factor K; Provisional
Probab=67.45 E-value=4.5 Score=45.22 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=27.2
Q ss_pred ccCcccccccccccCC------------cccccCCCcccHHHHHHHhc----cCCCCccCCCcCcC
Q 002710 832 CKAILKCGVCFDRPKE------------VVITKCFHLFCNPCIQRNLE----IRHRKCPGCGTAFG 881 (890)
Q Consensus 832 ~~~~l~C~iC~~~~~~------------~~~~~CgH~fC~~C~~~~~~----~~~~~CP~C~~~~~ 881 (890)
+..-+.|+.|...|.. |+..|||..|-..-+..... .+...||+|+..|.
T Consensus 450 l~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 450 AKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred cccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 3444678888776642 22223665554443433322 13345889988885
No 409
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.09 E-value=2.8 Score=43.05 Aligned_cols=43 Identities=12% Similarity=-0.022 Sum_probs=35.9
Q ss_pred cccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcccccC
Q 002710 848 VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 890 (890)
Q Consensus 848 ~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 890 (890)
|.++|=||++...-+.+|-...+..||.-+..|.-.+..++|+
T Consensus 346 P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~l~kvy~ 388 (389)
T KOG0396|consen 346 PHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSELCKVYL 388 (389)
T ss_pred cccccCceeehhHHHHhhcccCCCcCCCCCccccHHHHHHHhc
Confidence 7888999999998888886644467999999999888888775
No 410
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=67.05 E-value=2 Score=44.54 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=23.7
Q ss_pred cCCCcc-cHHHH--HHHhccCCCCccCCCcCcCCCCcccccC
Q 002710 852 KCFHLF-CNPCI--QRNLEIRHRKCPGCGTAFGQSDVRFVKI 890 (890)
Q Consensus 852 ~CgH~f-C~~C~--~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 890 (890)
.=||++ |..|- ...+..-..+||.||..|.. .-|+|+
T Consensus 236 ~~g~~~~c~~cg~~~~~~~~~~~~c~~Cg~~~~~--~GPlW~ 275 (380)
T COG1867 236 NLGYIYHCSRCGEIVGSFREVDEKCPHCGGKVHL--AGPLWL 275 (380)
T ss_pred hcCcEEEcccccceecccccccccCCccccccee--ccCccc
Confidence 567774 88885 33333355679999987665 445553
No 411
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=66.74 E-value=4.1 Score=35.97 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=25.7
Q ss_pred cccCccccccccccc-CCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCc
Q 002710 831 DCKAILKCGVCFDRP-KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 885 (890)
Q Consensus 831 ~~~~~l~C~iC~~~~-~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 885 (890)
.......||.|.... ...-...+|| ...+||.|+..|...+-
T Consensus 26 ~~~~~~~cP~C~s~~~~k~g~~~~~~-------------qRyrC~~C~~tf~~~~~ 68 (129)
T COG3677 26 MQITKVNCPRCKSSNVVKIGGIRRGH-------------QRYKCKSCGSTFTVETG 68 (129)
T ss_pred hhcccCcCCCCCccceeeECCccccc-------------cccccCCcCcceeeecc
Confidence 334457899998666 2222234554 34568888888875543
No 412
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=66.62 E-value=5.4 Score=39.32 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=26.6
Q ss_pred cccccCCcccccCCCcccHH-HHHHHhccCCCCccCCCcCcCCC
Q 002710 841 CFDRPKEVVITKCFHLFCNP-CIQRNLEIRHRKCPGCGTAFGQS 883 (890)
Q Consensus 841 C~~~~~~~~~~~CgH~fC~~-C~~~~~~~~~~~CP~C~~~~~~~ 883 (890)
|+..+....+++|||.|-.. ..........+.||.|+..+.++
T Consensus 103 lHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cg~~lrP~ 146 (218)
T cd01407 103 LHGSLFRVRCTKCGKEYPRDELQADIDREEVPRCPKCGGLLRPD 146 (218)
T ss_pred CcCCcCcceeCCCcCCCcHHHHhHhhccCCCCcCCCCCCccCCC
Confidence 55666666677899887433 22111222456799999876654
No 413
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.55 E-value=1.8 Score=48.41 Aligned_cols=42 Identities=24% Similarity=0.589 Sum_probs=31.4
Q ss_pred cccccccccc----CCcccccCCCcccHHHHHHHhcc-------CCCCccCCC
Q 002710 836 LKCGVCFDRP----KEVVITKCFHLFCNPCIQRNLEI-------RHRKCPGCG 877 (890)
Q Consensus 836 l~C~iC~~~~----~~~~~~~CgH~fC~~C~~~~~~~-------~~~~CP~C~ 877 (890)
..|-.|-..| +.+.+..||-+||..|....+.. ..|.|-.|-
T Consensus 166 ~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~ 218 (634)
T KOG1818|consen 166 EECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCY 218 (634)
T ss_pred cccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhH
Confidence 4687787776 34778899999999999877642 345588883
No 414
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.73 E-value=2.2e+02 Score=31.62 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002710 603 CQQRLSAAEAEIIELV 618 (890)
Q Consensus 603 l~~~l~~l~~el~~l~ 618 (890)
+..++..++.++....
T Consensus 176 l~~ql~~~~~~l~~ae 191 (444)
T TIGR03017 176 FVQQIAALREDLARAQ 191 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 415
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=65.61 E-value=1.8 Score=45.41 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=22.8
Q ss_pred ccccccccc----CCcccccCCCcccHHHHHHHhc
Q 002710 837 KCGVCFDRP----KEVVITKCFHLFCNPCIQRNLE 867 (890)
Q Consensus 837 ~C~iC~~~~----~~~~~~~CgH~fC~~C~~~~~~ 867 (890)
.|..|.-+| +...+..||.+||..|......
T Consensus 903 ~cmacq~pf~afrrrhhcrncggifcg~cs~asap 937 (990)
T KOG1819|consen 903 QCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAP 937 (990)
T ss_pred hhhhccCcHHHHHHhhhhcccCceeecccccCCCC
Confidence 566666665 3367779999999999876643
No 416
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=65.29 E-value=2.3 Score=30.08 Aligned_cols=12 Identities=17% Similarity=0.645 Sum_probs=8.8
Q ss_pred Cccccccccccc
Q 002710 834 AILKCGVCFDRP 845 (890)
Q Consensus 834 ~~l~C~iC~~~~ 845 (890)
.++.||+|+..-
T Consensus 3 ~Wi~CP~CgnKT 14 (55)
T PF14205_consen 3 EWILCPICGNKT 14 (55)
T ss_pred eEEECCCCCCcc
Confidence 467899998543
No 417
>PF14369 zf-RING_3: zinc-finger
Probab=65.24 E-value=1.6 Score=28.22 Aligned_cols=27 Identities=22% Similarity=0.532 Sum_probs=16.7
Q ss_pred cccHHHHHHHhc----cCCCCccCCCcCcCC
Q 002710 856 LFCNPCIQRNLE----IRHRKCPGCGTAFGQ 882 (890)
Q Consensus 856 ~fC~~C~~~~~~----~~~~~CP~C~~~~~~ 882 (890)
-||..|-....- .....||.|+..|-.
T Consensus 3 ywCh~C~~~V~~~~~~~~~~~CP~C~~gFvE 33 (35)
T PF14369_consen 3 YWCHQCNRFVRIAPSPDSDVACPRCHGGFVE 33 (35)
T ss_pred EeCccCCCEeEeCcCCCCCcCCcCCCCcEeE
Confidence 368888654432 122349999998853
No 418
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=65.15 E-value=1.6e+02 Score=29.75 Aligned_cols=137 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002710 696 SEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEY 775 (890)
Q Consensus 696 ~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l 775 (890)
.....+..++......+-.+-..-..+.......-..--.+..--..+...+..+..++..+...+..+......+...+
T Consensus 120 k~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KI 199 (267)
T PF10234_consen 120 KAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKI 199 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHhHhcc
Q 002710 776 EQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDC 832 (890)
Q Consensus 776 ~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~--~~~~~l~~e~~~~ 832 (890)
++...++......+..++.-+--+-++.+.+..++..+-...-. ..+.-|..+++.+
T Consensus 200 ekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 200 EKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
No 419
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=65.03 E-value=3 Score=35.30 Aligned_cols=27 Identities=30% Similarity=0.731 Sum_probs=18.6
Q ss_pred ccHHHHHHHhcc--CCCCccCCCcCcCCC
Q 002710 857 FCNPCIQRNLEI--RHRKCPGCGTAFGQS 883 (890)
Q Consensus 857 fC~~C~~~~~~~--~~~~CP~C~~~~~~~ 883 (890)
.|.+|-.+.+.- ....||.||..|...
T Consensus 11 ~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 11 TCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 466776666552 223499999999876
No 420
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=65.03 E-value=1.9 Score=38.31 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=26.0
Q ss_pred ccccccc-c----CCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCC
Q 002710 838 CGVCFDR-P----KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 838 C~iC~~~-~----~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 884 (890)
||+|... . ......-|||.+-. .+ ....||.||..|-..+
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~G~~~~v-~~------~~~~C~~CGe~~~~~e 45 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYKGESITI-GV------PGWYCPACGEELLDPE 45 (127)
T ss_pred CCCCCCccceeeeecceEEEcCEEEEE-ee------eeeECCCCCCEEEcHH
Confidence 9999842 2 22344568887654 32 4556999998876544
No 421
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.67 E-value=3.4 Score=33.51 Aligned_cols=14 Identities=36% Similarity=0.985 Sum_probs=11.3
Q ss_pred CCCCccCCCcCcCC
Q 002710 869 RHRKCPGCGTAFGQ 882 (890)
Q Consensus 869 ~~~~CP~C~~~~~~ 882 (890)
+...||.||.+|..
T Consensus 48 G~t~CP~Cg~~~e~ 61 (115)
T COG1885 48 GSTSCPKCGEPFES 61 (115)
T ss_pred ccccCCCCCCccce
Confidence 56679999998875
No 422
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=64.48 E-value=1.5e+02 Score=29.09 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002710 752 WELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSET 817 (890)
Q Consensus 752 ~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~ 817 (890)
..|..+..+++-.+..-..+......+..-+.++..+++.....+--|+.++..-+.++.++..-+
T Consensus 236 Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 236 GRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544444445555555555555555555555555555556666665555555554443
No 423
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.31 E-value=2 Score=42.66 Aligned_cols=47 Identities=23% Similarity=0.636 Sum_probs=36.2
Q ss_pred cccccccccccCCcccc-cCCCcccHHHHHHHhccCCCCccCCCcCcCC
Q 002710 835 ILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 882 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~ 882 (890)
.-.|-+|...+.-|-.. -|+|-||..|-..|.. ..+-||.|+.....
T Consensus 105 ~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~-~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 105 HDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFA-MGNDCPDCRGKISP 152 (324)
T ss_pred ccceeeeeeeEEecccccCceeeeeecCCchhhh-hhhccchhhcCcCc
Confidence 35788888877665444 5999999999999987 56779998765543
No 424
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.27 E-value=2.1e+02 Score=30.81 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=8.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHH
Q 002710 683 ESVKTKQVQSFLLSEKQALARQ 704 (890)
Q Consensus 683 e~~~~~~~~~~l~~~~~~l~~e 704 (890)
.+.+.++.+..+..+...++.+
T Consensus 397 niRKq~~DI~Kil~etreLqkq 418 (521)
T KOG1937|consen 397 NIRKQEQDIVKILEETRELQKQ 418 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 425
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=64.26 E-value=2.1 Score=37.08 Aligned_cols=22 Identities=27% Similarity=0.473 Sum_probs=12.9
Q ss_pred ccccccccccCCcccccCCCcccHHH
Q 002710 836 LKCGVCFDRPKEVVITKCFHLFCNPC 861 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~fC~~C 861 (890)
..||.|+-+... +=|-+||..|
T Consensus 29 ~hCp~Cg~PLF~----KdG~v~CPvC 50 (131)
T COG1645 29 KHCPKCGTPLFR----KDGEVFCPVC 50 (131)
T ss_pred hhCcccCCccee----eCCeEECCCC
Confidence 579999876543 3344444444
No 426
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=63.76 E-value=2.7 Score=24.82 Aligned_cols=13 Identities=38% Similarity=0.953 Sum_probs=10.2
Q ss_pred CCccCCCcCcCCC
Q 002710 871 RKCPGCGTAFGQS 883 (890)
Q Consensus 871 ~~CP~C~~~~~~~ 883 (890)
..||.|+..|...
T Consensus 3 ~~C~~CgR~F~~~ 15 (25)
T PF13913_consen 3 VPCPICGRKFNPD 15 (25)
T ss_pred CcCCCCCCEECHH
Confidence 4699999998654
No 427
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=63.41 E-value=5.7 Score=28.92 Aligned_cols=39 Identities=31% Similarity=0.698 Sum_probs=26.4
Q ss_pred ccccccccccC--C-cccc---cCCCc-c--cHHHHHHHhccCCCCccCCC
Q 002710 836 LKCGVCFDRPK--E-VVIT---KCFHL-F--CNPCIQRNLEIRHRKCPGCG 877 (890)
Q Consensus 836 l~C~iC~~~~~--~-~~~~---~CgH~-f--C~~C~~~~~~~~~~~CP~C~ 877 (890)
..|+.|+..+. + .+.+ .||.. . |..|-+.. ..-.||.||
T Consensus 8 ~~CtSCg~~i~~~~~~~~F~CPnCG~~~I~RC~~CRk~~---~~Y~CP~CG 55 (59)
T PRK14890 8 PKCTSCGIEIAPREKAVKFLCPNCGEVIIYRCEKCRKQS---NPYTCPKCG 55 (59)
T ss_pred ccccCCCCcccCCCccCEeeCCCCCCeeEeechhHHhcC---CceECCCCC
Confidence 46888887653 2 2223 68887 2 89997644 456799997
No 428
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.34 E-value=2.2 Score=28.94 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=9.8
Q ss_pred CCCccCCCcCcC
Q 002710 870 HRKCPGCGTAFG 881 (890)
Q Consensus 870 ~~~CP~C~~~~~ 881 (890)
..-||.|+.||+
T Consensus 12 ~KICpvCqRPFs 23 (54)
T COG4338 12 DKICPVCQRPFS 23 (54)
T ss_pred hhhhhhhcCchH
Confidence 445999999996
No 429
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.26 E-value=2.9e+02 Score=32.04 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=17.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 592 RVKAANEAEAACQQRLSAAEAEIIELVAKLDA 623 (890)
Q Consensus 592 ~~~~~~~~~~~l~~~l~~l~~el~~l~~~~~~ 623 (890)
.++.+....+.+...|...++++..+-..+..
T Consensus 55 kve~a~~~~~~L~~~ia~~eael~~l~s~l~~ 86 (660)
T KOG4302|consen 55 KVEEASESKARLLQEIAVIEAELNDLCSALGE 86 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444445556666666666666665555443
No 430
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=63.23 E-value=4 Score=37.21 Aligned_cols=16 Identities=31% Similarity=0.829 Sum_probs=12.2
Q ss_pred CCCCccCCCcCcCCCC
Q 002710 869 RHRKCPGCGTAFGQSD 884 (890)
Q Consensus 869 ~~~~CP~C~~~~~~~d 884 (890)
+...||.||..+...|
T Consensus 122 ~~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 122 GTFTCPRCGEELEEDD 137 (147)
T ss_pred CcEECCCCCCEEEEcC
Confidence 4477999999886554
No 431
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=62.55 E-value=2.6e+02 Score=31.28 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 598 EAEAACQQRLSAAEAEIIELVAKL 621 (890)
Q Consensus 598 ~~~~~l~~~l~~l~~el~~l~~~~ 621 (890)
.....++.++..+..++..|...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~rL~a~~ 120 (457)
T TIGR01000 97 NQKQLLEQQLDNLKDQKKSLDTLK 120 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554443
No 432
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=62.39 E-value=2.3 Score=26.91 Aligned_cols=25 Identities=36% Similarity=0.894 Sum_probs=11.5
Q ss_pred CcccHHHHHHHhcc---CCCCccCCCcC
Q 002710 855 HLFCNPCIQRNLEI---RHRKCPGCGTA 879 (890)
Q Consensus 855 H~fC~~C~~~~~~~---~~~~CP~C~~~ 879 (890)
|.||..|=...... ..+.||.|+..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-E
T ss_pred CcccCcCCccccCCCCcCEeECCCCcCE
Confidence 66777775554332 23458888753
No 433
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.12 E-value=4 Score=34.30 Aligned_cols=25 Identities=24% Similarity=0.737 Sum_probs=16.4
Q ss_pred cccHHHHHHHhccCCCCccCCCcCcCCCC
Q 002710 856 LFCNPCIQRNLEIRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 856 ~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 884 (890)
-||..|-...+. .||+|..++...+
T Consensus 29 afcskcgeati~----qcp~csasirgd~ 53 (160)
T COG4306 29 AFCSKCGEATIT----QCPICSASIRGDY 53 (160)
T ss_pred HHHhhhchHHHh----cCCccCCcccccc
Confidence 377777665543 3888887776643
No 434
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.11 E-value=12 Score=36.41 Aligned_cols=55 Identities=15% Similarity=-0.007 Sum_probs=50.2
Q ss_pred cccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCccccc
Q 002710 835 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
.+.|.|-+..+++||++|-|=++-..=|...+..-++.-|+-|.++....+.|+|
T Consensus 211 ~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~ 265 (284)
T KOG4642|consen 211 YLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNL 265 (284)
T ss_pred hhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccch
Confidence 3788899999999999999999999999999887788899999999999988886
No 435
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=62.02 E-value=3 Score=48.42 Aligned_cols=24 Identities=33% Similarity=0.697 Sum_probs=15.3
Q ss_pred CCcccHHHHHHHhccCCCCccCCCcC
Q 002710 854 FHLFCNPCIQRNLEIRHRKCPGCGTA 879 (890)
Q Consensus 854 gH~fC~~C~~~~~~~~~~~CP~C~~~ 879 (890)
|.++|..|-.. ......||.|+..
T Consensus 461 ~~L~CH~Cg~~--~~~p~~Cp~Cgs~ 484 (730)
T COG1198 461 GQLRCHYCGYQ--EPIPQSCPECGSE 484 (730)
T ss_pred CeeEeCCCCCC--CCCCCCCCCCCCC
Confidence 55577777544 2234469999876
No 436
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=61.39 E-value=5.4 Score=46.20 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=35.2
Q ss_pred cccCcccccccccccCCcccc-cCCCcccHHHHHHHhc---cCCCCccCCCcCcCCCCc
Q 002710 831 DCKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLE---IRHRKCPGCGTAFGQSDV 885 (890)
Q Consensus 831 ~~~~~l~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~---~~~~~CP~C~~~~~~~d~ 885 (890)
.++..|.|++|+.+..-|+.- .|.|.=|+.=..-... .....||+|.+.+.-.++
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccch
Confidence 344568999998877654333 6777666654332222 244469999998887664
No 437
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=61.00 E-value=6 Score=43.09 Aligned_cols=52 Identities=17% Similarity=0.373 Sum_probs=0.0
Q ss_pred cccccccccccCC--------cccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcccccC
Q 002710 835 ILKCGVCFDRPKE--------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 890 (890)
Q Consensus 835 ~l~C~iC~~~~~~--------~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 890 (890)
...|+.|+..|+- .... ||| +-..=+...+.-....||.|+.++. +++.+.|
T Consensus 88 lv~c~~c~~~yRADHLiEe~l~~~~-~~~-~~~~e~~~ii~~~~ir~p~~g~~l~--~v~~FNL 147 (558)
T COG0423 88 LVECKKCGERYRADHLIEEYLGKDG-HGN-MSPEELTEIIREYDIRCPECGGELN--EVREFNL 147 (558)
T ss_pred eeeccccchhhhhhHHHHHHhhhcc-ccc-CCHHHHHHHHHHcCCcCCCcCCccC--Ccceeee
No 438
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=61.00 E-value=2.5e+02 Score=30.57 Aligned_cols=251 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhHHH---hhhhHHHHHHHHHHHHHHHHH------------------HHhHHHHHH
Q 002710 490 TADEALSLREKAVSLKVSLSAKTNEQKRL---TDKCVEQMAEIKSLKALIEKL------------------QKDKLESQI 548 (890)
Q Consensus 490 ~~~~l~~l~~~~~~l~~~l~~l~~~~~~l---~~~~~~~~~el~~l~~~~~~l------------------~~~~~~l~~ 548 (890)
....+.+|+.++.++...+.......... ..........+..|+..+..+ ......+..
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l~l~~~lg~~~~~~~~~~~~~~~~kl~~ 171 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSLKLEELLGEETAQDLSDPQKALSKKLLS 171 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHhhcccccchhhhcccccchhhHHHHHHH
Q ss_pred HHHHh------------------ccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 002710 549 MLDMY------------------GQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAA 610 (890)
Q Consensus 549 ~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~l~~l 610 (890)
.++.+ +-+......-......+..+...+..|+..+|........-........+-..+..+
T Consensus 172 ~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L 251 (388)
T PF04912_consen 172 QLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNEL 251 (388)
T ss_pred hhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHH
Q ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002710 611 EAEIIEL-VAKLDASERDVMELEEAMKSKDREAEAY------IAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSE 683 (890)
Q Consensus 611 ~~el~~l-~~~~~~~~~~~~~l~~~~~~~~~~~~~l------~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e 683 (890)
...+.-| ...++.+...+..|...+..+....... ...+..+-..+..+..-...+-.-+..+..- ..+..+
T Consensus 252 ~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL-~~lH~~ 330 (388)
T PF04912_consen 252 ERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTL-KSLHEE 330 (388)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 684 SVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLA 744 (890)
Q Consensus 684 ~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 744 (890)
.....+.+..+......+...+......+..+... +...+..+..++..++..+..++
T Consensus 331 a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 331 AAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccC
No 439
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.76 E-value=6.6 Score=44.42 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred ccccccccCCcccc--cCCCcccHHHHHHHhccCCCCccC--CCcCcCCCCcccccC
Q 002710 838 CGVCFDRPKEVVIT--KCFHLFCNPCIQRNLEIRHRKCPG--CGTAFGQSDVRFVKI 890 (890)
Q Consensus 838 C~iC~~~~~~~~~~--~CgH~fC~~C~~~~~~~~~~~CP~--C~~~~~~~d~~~~~~ 890 (890)
|.+|....+.+..- -|||.--.+|+..|+. ....||. |+..-....+.-.|.
T Consensus 782 CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~-~~s~ca~~~C~~~c~~~~~~D~~~ 837 (839)
T KOG0269|consen 782 CTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFF-KASPCAKSICPHLCHYSSFIDTFM 837 (839)
T ss_pred ceeecceeeeeEeecccccccccHHHHHHHHh-cCCCCccccCCccccccccchhhh
No 440
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=60.37 E-value=5.1 Score=29.47 Aligned_cols=15 Identities=33% Similarity=0.942 Sum_probs=0.0
Q ss_pred CCCCccCCCcCcCCC
Q 002710 869 RHRKCPGCGTAFGQS 883 (890)
Q Consensus 869 ~~~~CP~C~~~~~~~ 883 (890)
.++.||.||.++..+
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
No 441
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=60.36 E-value=5.7 Score=40.86 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=0.0
Q ss_pred ccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcccccC
Q 002710 838 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 890 (890)
Q Consensus 838 C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 890 (890)
|++-+-+|..||+++-|-+|-..-|-.|++ ...+-|+-|.+....|++++-|
T Consensus 43 C~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lk-k~g~nP~tG~kl~~~dLIkL~F 94 (518)
T KOG0883|consen 43 CSLTMLPFEDPVCTVDGTVFDLTAIVPWLK-KHGTNPITGQKLDGKDLIKLKF 94 (518)
T ss_pred ceeccccccCcccccCCcEEeeehhhHHHH-HcCCCCCCCCccccccceeeee
No 442
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=60.22 E-value=1.3e+02 Score=27.05 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q 002710 674 DDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRIL--------------------------------- 720 (890)
Q Consensus 674 ~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~--------------------------------- 720 (890)
...+..+......+...+..+...+..+...+..+...++.+..--.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002710 721 ------HAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSA 767 (890)
Q Consensus 721 ------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 767 (890)
.+.+.+..+...+..+...+..+...+..+...+..+...+..+..+
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 443
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=59.99 E-value=5.1e+02 Score=33.77 Aligned_cols=606 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred cCCCCCCCCCChhHHHHHHhhhccccCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccChh
Q 002710 128 QTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAE 207 (890)
Q Consensus 128 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 207 (890)
|.-...+.+.....|+...+ -..++..+..+.+.+.. ...++..+..+...+..+.. +......+.......
T Consensus 195 P~Ls~~~~~~~l~~~l~~~l------~~l~~~~i~~l~e~~~~-~~~~~~~le~l~~~~~~l~~-i~~~y~~y~~~~~~~ 266 (1353)
T TIGR02680 195 PQLSKKPDEGVLSDALTEAL------PPLDDDELTDVADALEQ-LDEYRDELERLEALERALRN-FLQRYRRYARTMLRR 266 (1353)
T ss_pred CCCCCCCChHHHHHHHHHhC------CCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_pred hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhHHHHHHH-----HHHHHHHHHHHHHHHHh
Q 002710 208 DAII--QLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLA-----ETMAELEESRRKLVSLK 280 (890)
Q Consensus 208 ~~~~--~l~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~-----~~~~~le~~~~~~~~~~ 280 (890)
.... .....+..+..++..+...+.........++..+..++..+..+..++..++ ....++......+....
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~ 346 (1353)
T TIGR02680 267 RATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQ 346 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhccccCccccCccccccCCCCCCCCCCcccccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 002710 281 MQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELND 360 (890)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~ 360 (890)
.... .... ........+......+.............+......+........=
T Consensus 347 ~~a~-------------------~~~~-------~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~~~a~~~~~ 400 (1353)
T TIGR02680 347 AAAA-------------------DARQ-------AIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGL 400 (1353)
T ss_pred HHHH-------------------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q ss_pred hhHhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhhchhHHHHHHHHHHH
Q 002710 361 DKYVHSSRLYNLVNDQLQHW---NVEVERYKALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQ 437 (890)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~---~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 437 (890)
............-......+ ......+......+...+..+....... ................+........
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~i~~L~~~~~~~----e~a~~~~~~~~~~~~el~~~~~~~~ 476 (1353)
T TIGR02680 401 SPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLRRRDDVA----DRAEATHAAARARRDELDEEAEQAA 476 (1353)
T ss_pred CccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhh-------------------------------cChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 438 KSIIEKNDLGLKMEEAIQD-------------------------------SGRKDIKAEFRVMASALSKEMGMMEAQLNR 486 (890)
Q Consensus 438 ~~~~~~~~l~~~l~~~~~~-------------------------------~~~~~~~~el~~~~~~l~~~~~~l~~~~~~ 486 (890)
..... ...........-. ........=..............+......
T Consensus 477 e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~ 555 (1353)
T TIGR02680 477 ARAEL-ADEAVHREGARLAWVDAWQAQLRELTILAVDDQPGALADLDSWDALLQGEAPVRVAVYSAVQPLADELTRERAA 555 (1353)
T ss_pred HHHHH-HHHHHHHHHHHHHHhhhHHhhhccchhhhhcchhhhhhhhcchhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhh-------------------------------------------------------
Q 002710 487 WKETADEALSLREKAVSLKVSLSAK------------------------------------------------------- 511 (890)
Q Consensus 487 ~~~~~~~l~~l~~~~~~l~~~l~~l------------------------------------------------------- 511 (890)
++.....+.....++......++.-
T Consensus 556 l~~~~~~l~e~~~el~~e~~~~e~~~~~~P~~~~~R~a~r~~~~pgaP~~~l~df~e~v~~~~ra~IEaAL~~~GLLDA~ 635 (1353)
T TIGR02680 556 LRLAEEVLEEERDALRTERERLEQGTDRDPPPPHTRAALRRAGRAGAPLWQLVDFADDVPADVRAGLEAALEAAGLLDAW 635 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHcCCCCCcchhheecCCCCCHHHHHHHHHHHHHCCCccee
Q ss_pred --------------------------------------------------------------------------------
Q 002710 512 -------------------------------------------------------------------------------- 511 (890)
Q Consensus 512 -------------------------------------------------------------------------------- 511 (890)
T Consensus 636 v~p~~~~~~~~~d~~l~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~v~~~L~~i~~~~~~~~~~~~~v~~dG~~r 715 (1353)
T TIGR02680 636 VTADGTLQDPDGAVLLHPATVAPGETLADVLRPWLDPPVSAERQPEVDPAAVTRVLEGIACGTADAGAAHTWIDVDGRFR 715 (1353)
T ss_pred eCCCcccccCCCceeecCCCcccCCCHHhhccCccCCCcchhccccCcHHHHHHHHhhccccCCCCCCCCeeECCCCcee
Q ss_pred -----------hHHhHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHH
Q 002710 512 -----------TNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVL 580 (890)
Q Consensus 512 -----------~~~~~~l~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~l 580 (890)
..+.-.....-.-+...|..|...+..+...+.. +...+..+...+..|
T Consensus 716 ~G~l~G~~~k~~a~~IG~~aR~~~R~~ri~el~~~IaeL~~~i~~--------------------l~~~l~~l~~r~~~L 775 (1353)
T TIGR02680 716 LGVLRGAWAKPAAEYIGAAARERARLRRIAELDARLAAVDDELAE--------------------LARELRALGARQRAL 775 (1353)
T ss_pred eeeeecccCCcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHH
Q 002710 581 KNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREA--EAYIAEMETIGQAFED 658 (890)
Q Consensus 581 ~~~L~~~~~~~~~~~~~~~~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~l~~e~~~l~~~~~~ 658 (890)
.......-....+.............+.....++......+......+......+...-..+ ..-...+..+...+..
T Consensus 776 ~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~ 855 (1353)
T TIGR02680 776 ADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKR 855 (1353)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 659 MQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNS 738 (890)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 738 (890)
+...+..+......+.... .........+..+...+.....++.....++.....++..+...+... ++.+..
T Consensus 856 y~~~l~~l~~~~~~L~~A~----~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~---~eel~a 928 (1353)
T TIGR02680 856 FGDHLHTLEVAVRELRHAA----TRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAM---VDEIRA 928 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 739 EDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKL 799 (890)
Q Consensus 739 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l 799 (890)
.+......+..+..++..+......+...+..+...+......+......-.....-...+
T Consensus 929 ~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~e~ 989 (1353)
T TIGR02680 929 RLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERAEARDHAIGQLREF 989 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 444
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.97 E-value=4.8 Score=35.90 Aligned_cols=32 Identities=22% Similarity=0.490 Sum_probs=0.0
Q ss_pred CcccHHHHHHHhccCCCCccCCCcCcCCCCcccccC
Q 002710 855 HLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 890 (890)
Q Consensus 855 H~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 890 (890)
|-||..|=...+.. ||.|+.++......+=+|
T Consensus 28 ~~fC~kCG~~tI~~----Cp~C~~~IrG~y~v~gv~ 59 (158)
T PF10083_consen 28 EKFCSKCGAKTITS----CPNCSTPIRGDYHVEGVF 59 (158)
T ss_pred HHHHHHhhHHHHHH----CcCCCCCCCCceecCCee
No 445
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=59.95 E-value=8.3 Score=32.59 Aligned_cols=39 Identities=31% Similarity=0.663 Sum_probs=0.0
Q ss_pred cccccccCCcccccCCCcccHHH--------HHHHhccCCCCccCCC
Q 002710 839 GVCFDRPKEVVITKCFHLFCNPC--------IQRNLEIRHRKCPGCG 877 (890)
Q Consensus 839 ~iC~~~~~~~~~~~CgH~fC~~C--------~~~~~~~~~~~CP~C~ 877 (890)
.+|....+.+....|.-.||..| +........-.||.|+
T Consensus 22 ~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Cr 68 (105)
T PF10497_consen 22 TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCR 68 (105)
T ss_pred eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCC
No 446
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=59.83 E-value=4.1 Score=29.74 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=0.0
Q ss_pred cccCcccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCcccccC
Q 002710 831 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 890 (890)
Q Consensus 831 ~~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 890 (890)
.+...+.||+|..+..-.-... .--||.|+..|-..|-+|+-|
T Consensus 4 ~LLeiLaCP~~kg~L~~~~~~~-----------------~L~c~~~~~aYpI~dGIPvlL 46 (60)
T COG2835 4 RLLEILACPVCKGPLVYDEEKQ-----------------ELICPRCKLAYPIRDGIPVLL 46 (60)
T ss_pred hhheeeeccCcCCcceEeccCC-----------------EEEecccCceeecccCccccC
No 447
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=59.80 E-value=5.5 Score=29.04 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=0.0
Q ss_pred CCCcc-cHHHHHHHhccCCCCccCC
Q 002710 853 CFHLF-CNPCIQRNLEIRHRKCPGC 876 (890)
Q Consensus 853 CgH~f-C~~C~~~~~~~~~~~CP~C 876 (890)
|||.| +...... .+...||.|
T Consensus 34 Cgh~w~~~v~~R~---~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDRT---RRGKGCPYC 55 (55)
T ss_pred CCCeeEccHhhhc---cCCCCCCCC
No 448
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=59.38 E-value=4.5 Score=26.76 Aligned_cols=31 Identities=23% Similarity=0.582 Sum_probs=0.0
Q ss_pred ccccccccccCCcccccCCCcccHHHHHHHhccCC--CCccCCCcCc
Q 002710 836 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRH--RKCPGCGTAF 880 (890)
Q Consensus 836 l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~--~~CP~C~~~~ 880 (890)
+.||-|...|.-+ ...+.... ..||.|+..|
T Consensus 3 ~~CP~C~~~~~v~--------------~~~~~~~~~~v~C~~C~~~~ 35 (38)
T TIGR02098 3 IQCPNCKTSFRVV--------------DSQLGANGGKVRCGKCGHVW 35 (38)
T ss_pred EECCCCCCEEEeC--------------HHHcCCCCCEEECCCCCCEE
No 449
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=59.33 E-value=1.9e+02 Score=28.54 Aligned_cols=169 Identities=11% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 002710 644 AYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQIN-----ALVESAKLR 718 (890)
Q Consensus 644 ~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~-----~~~~~~~~~ 718 (890)
.+..-+..++.-..-+...+.++...+..+...+.........+...+..+...+..+.......- ......-..
T Consensus 13 ~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~ 92 (221)
T PF04012_consen 13 NINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQR 92 (221)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 719 ILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKK 798 (890)
Q Consensus 719 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~ 798 (890)
...++..+..+...+..+...+..+...+..++..+.++......+..+........ .+...+..+. .......+.+
T Consensus 93 k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~-~~~~~~~~~~--~~~a~~~~er 169 (221)
T PF04012_consen 93 KADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK-KVNEALASFS--VSSAMDSFER 169 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCC--ccchHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002710 799 LEEELMEVNNKVAELTS 815 (890)
Q Consensus 799 l~~e~~~l~~~l~~l~~ 815 (890)
++..+..+.........
T Consensus 170 ~e~ki~~~ea~a~a~~e 186 (221)
T PF04012_consen 170 MEEKIEEMEARAEASAE 186 (221)
T ss_pred HHHHHHHHHHHHHHHHH
No 450
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=59.11 E-value=5.7 Score=27.60 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=0.0
Q ss_pred cccccccccCCcccccCCCcccHHHHHHHhcc
Q 002710 837 KCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI 868 (890)
Q Consensus 837 ~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~ 868 (890)
.|.||.....+ -+.-.|+.+|..|-..++.+
T Consensus 1 ~CiiC~~~~~~-GI~I~~~fIC~~CE~~iv~~ 31 (46)
T PF10764_consen 1 KCIICGKEKEE-GIHIYGKFICSDCEKEIVNT 31 (46)
T ss_pred CeEeCCCcCCC-CEEEECeEehHHHHHHhccC
No 451
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=58.91 E-value=1.8e+02 Score=28.23 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002710 675 DLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWEL 754 (890)
Q Consensus 675 ~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 754 (890)
.++-.+..++..+... +....+...+....+.... +++........+..+..+++.....++..+...
T Consensus 114 ~R~~~ll~~l~~l~~~--------~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~ 181 (216)
T KOG1962|consen 114 RRLHTLLRELATLRAN--------EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKV 181 (216)
T ss_pred HHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 002710 755 ADAEKELKWLKSAVTSSDKEYEQIQRKTE 783 (890)
Q Consensus 755 ~~l~~~~~~~~~~~~~~~~~l~~l~~~l~ 783 (890)
..+..+...+....+.+-++...++.++.
T Consensus 182 ~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 182 DALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHh
No 452
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=58.80 E-value=2.5e+02 Score=29.92 Aligned_cols=241 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002710 427 SRIERLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKV 506 (890)
Q Consensus 427 ~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~el~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~ 506 (890)
.++..--..+.........++..+........ ....+...+...+....................+.....++.....
T Consensus 1 erl~~GL~KL~et~~~V~~m~~~L~~~~~~L~--~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~ 78 (344)
T PF12777_consen 1 ERLENGLDKLKETEEQVEEMQEELEEKQPELE--EKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKE 78 (344)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHhHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcchHHHHHHHHHHHH---------HHH
Q 002710 507 SLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAH---------SQA 577 (890)
Q Consensus 507 ~l~~l~~~~~~l~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~---------~~~ 577 (890)
..+. .+....-.+......+..+.. ..+..+.++...+..|...-.-+.-+- ...
T Consensus 79 ~a~~----------~L~~a~P~L~~A~~al~~l~k------~di~Eiks~~~PP~~V~~V~~aV~iLl~~~~~~~k~~~W 142 (344)
T PF12777_consen 79 EAEE----------ELAEAEPALEEAQEALKSLDK------SDISEIKSYANPPEAVKLVMEAVCILLGPKGKLPKDTSW 142 (344)
T ss_dssp HHHH----------HHHHHHHHHHHHHHHHHCS-H------HHHHHHHHSSS--HHHHHHHHHHHHHTT-S-SEE---HH
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHhCCH------HHHHHHHhhCCCcHHHHHHHHHHhhHHhccccccccccH
Q ss_pred HHHHhhhhhhhHHHHhhHHHHHHHHHH-----------------------------------------------------
Q 002710 578 EVLKNALDEHSLELRVKAANEAEAACQ----------------------------------------------------- 604 (890)
Q Consensus 578 ~~l~~~L~~~~~~~~~~~~~~~~~~l~----------------------------------------------------- 604 (890)
.....-|..... -+..+.
T Consensus 143 ~~ak~~l~~~~~---------Fl~~L~~fd~~~i~~~~~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~ 213 (344)
T PF12777_consen 143 ESAKKLLSDSDN---------FLQRLKNFDKDNIPEATIKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVN 213 (344)
T ss_dssp HHHHCHHCSSTT---------HHHHHHHS-GGG--HHHHHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHH---------HHHHHHhhccccccHHHHHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 605 -------QRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLN 677 (890)
Q Consensus 605 -------~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 677 (890)
..+..++..+...+..+......+..+...+..+..+++....+...+...+......+.....-+..+..+.
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Q ss_pred HHHHHhHHhHHHHHHHH
Q 002710 678 IKLVSESVKTKQVQSFL 694 (890)
Q Consensus 678 ~~l~~e~~~~~~~~~~l 694 (890)
..+...+..+......+
T Consensus 294 ~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 294 ERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HCCHCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccc
No 453
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=58.69 E-value=91 Score=24.77 Aligned_cols=73 Identities=10% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002710 707 QINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKT 782 (890)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l 782 (890)
.+..-++.++.++..+..........-..++..+.....++..+...+.+++..-..++ ..++.++..+..++
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK---~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK---QQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
No 454
>PHA00733 hypothetical protein
Probab=58.61 E-value=8.2 Score=34.11 Aligned_cols=47 Identities=21% Similarity=0.422 Sum_probs=0.0
Q ss_pred ccccccccccCC---------------------cccccCCCcc-cHHHHHHHhc--cCCCCccCCCcCcCC
Q 002710 836 LKCGVCFDRPKE---------------------VVITKCFHLF-CNPCIQRNLE--IRHRKCPGCGTAFGQ 882 (890)
Q Consensus 836 l~C~iC~~~~~~---------------------~~~~~CgH~f-C~~C~~~~~~--~~~~~CP~C~~~~~~ 882 (890)
+.|.||...+.+ ..+..||-.| ...=+..... .....||.|+..|..
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~ 111 (128)
T PHA00733 41 LIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRN 111 (128)
T ss_pred HHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCC
No 455
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=58.61 E-value=3.2 Score=24.71 Aligned_cols=13 Identities=46% Similarity=1.147 Sum_probs=0.0
Q ss_pred CCCCccCCCcCcC
Q 002710 869 RHRKCPGCGTAFG 881 (890)
Q Consensus 869 ~~~~CP~C~~~~~ 881 (890)
+...||.|+..|.
T Consensus 13 k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 13 KPYKCPYCGKSFS 25 (26)
T ss_dssp SSEEESSSSEEES
T ss_pred CCCCCCCCcCeeC
No 456
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=58.59 E-value=3.2 Score=50.71 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=0.0
Q ss_pred ccccccccCC-cccccCCCcccHHHHHHHhccCCCCccCCCcCcCCCCccccc
Q 002710 838 CGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 838 C~iC~~~~~~-~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
|.-|...+.. ..+..||.+||..|-+.... +.+.|--|+......++.|.|
T Consensus 8 ~~~~~t~~~~~~~~~~~g~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~ 59 (1598)
T KOG0230|consen 8 CYDCDTSVNRRHHCRVCGRVFCSKCQDSPET-SIRVCNECRGQWEQGNVAPSD 59 (1598)
T ss_pred hhccccccccCCCCcccCceeccccCCCCcc-ceeehhhhhhhccccCCCCcc
No 457
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=58.18 E-value=6.8 Score=29.05 Aligned_cols=19 Identities=32% Similarity=0.614 Sum_probs=0.0
Q ss_pred CCCccCCCcCcC---CCCcccc
Q 002710 870 HRKCPGCGTAFG---QSDVRFV 888 (890)
Q Consensus 870 ~~~CP~C~~~~~---~~d~~~~ 888 (890)
...||+|++++. .+..+|+
T Consensus 6 ~v~CP~C~k~~~w~~~~~~rPF 27 (62)
T PRK00418 6 TVNCPTCGKPVEWGEISPFRPF 27 (62)
T ss_pred cccCCCCCCcccccCCCCcCCc
No 458
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=58.13 E-value=10 Score=36.87 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=0.0
Q ss_pred cccccCCcccccCCCcc-cHHHHHHHhcc-CCCCccCCCcCcCCC
Q 002710 841 CFDRPKEVVITKCFHLF-CNPCIQRNLEI-RHRKCPGCGTAFGQS 883 (890)
Q Consensus 841 C~~~~~~~~~~~CgH~f-C~~C~~~~~~~-~~~~CP~C~~~~~~~ 883 (890)
++..+....++.|||.| ....+...... ..+.||.|+..+.++
T Consensus 89 lHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~ 133 (206)
T cd01410 89 LHGNMFIEVCKSCGPEYVRDDVVETRGDKETGRRCHACGGILKDT 133 (206)
T ss_pred ecCCcCcccCCCCCCccchHHHHHHhhcCCCCCcCCCCcCccCCc
No 459
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.03 E-value=9 Score=40.06 Aligned_cols=60 Identities=23% Similarity=0.553 Sum_probs=0.0
Q ss_pred HHHhHhcccCcccccc--cccccCC------cccccCCCcccHHHHHHHhcc----------------------------
Q 002710 825 LQDEIKDCKAILKCGV--CFDRPKE------VVITKCFHLFCNPCIQRNLEI---------------------------- 868 (890)
Q Consensus 825 l~~e~~~~~~~l~C~i--C~~~~~~------~~~~~CgH~fC~~C~~~~~~~---------------------------- 868 (890)
++..++.+.....||- |-.+-.. ...-+|.-.||.-|...|+..
T Consensus 263 lqk~l~~msdv~yCPr~~Cq~p~~~d~~~~l~~CskCnFaFCtlCk~t~HG~s~Ck~~~~~~~~l~~~~~~~d~a~k~el 342 (445)
T KOG1814|consen 263 LQKTLELMSDVVYCPRACCQLPVKQDPGRALAICSKCNFAFCTLCKLTWHGVSPCKVKAEKLIELYLEYLEADEARKREL 342 (445)
T ss_pred HHHHHHhhcccccCChhhccCccccCchhhhhhhccCccHHHHHHHHhhcCCCcccCchHHHHHHHHHHhhcCHHHHHHH
Q ss_pred ------------------------CCCCccCCCcCcCCCC
Q 002710 869 ------------------------RHRKCPGCGTAFGQSD 884 (890)
Q Consensus 869 ------------------------~~~~CP~C~~~~~~~d 884 (890)
....||.|..++...+
T Consensus 343 e~Ryg~rvve~~vn~~lsekwl~~N~krCP~C~v~IEr~e 382 (445)
T KOG1814|consen 343 EKRYGKRVVEELVNDFLSEKWLESNSKRCPKCKVVIERSE 382 (445)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcCCCCCcccceeecCC
No 460
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=57.90 E-value=5.7 Score=26.49 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=0.0
Q ss_pred ccccccccCC-ccccc-CCCcccHH
Q 002710 838 CGVCFDRPKE-VVITK-CFHLFCNP 860 (890)
Q Consensus 838 C~iC~~~~~~-~~~~~-CgH~fC~~ 860 (890)
|.+|.....- |..-+ ||+.||..
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCccccc
No 461
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=57.53 E-value=2.7e+02 Score=29.77 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 664 QHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHL 743 (890)
Q Consensus 664 ~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 743 (890)
..+.......+.++.++..+++...+.+..+..+...+..+...+...+...+..+..++++...+....-........+
T Consensus 2 ~~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~ 81 (459)
T KOG0288|consen 2 APLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTL 81 (459)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002710 744 AVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKE 788 (890)
Q Consensus 744 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 788 (890)
.......+........++.++..+.......--.++..+..+...
T Consensus 82 t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~ 126 (459)
T KOG0288|consen 82 TVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIA 126 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHH
No 462
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=57.22 E-value=3.9 Score=30.87 Aligned_cols=21 Identities=24% Similarity=0.467 Sum_probs=0.0
Q ss_pred ccccccc-cCCcccccCCCccc
Q 002710 838 CGVCFDR-PKEVVITKCFHLFC 858 (890)
Q Consensus 838 C~iC~~~-~~~~~~~~CgH~fC 858 (890)
|.+|... ..--+.+.|||++|
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C 22 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGC 22 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEE
T ss_pred CCCCCCcCCceEEeCCCCcccc
No 463
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.08 E-value=74 Score=23.21 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002710 604 QQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFED 658 (890)
Q Consensus 604 ~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~ 658 (890)
..++..|..++..|..+++.+..++..+...+.....+.......+..+-..|..
T Consensus 2 ~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY~K 56 (56)
T PF04728_consen 2 NAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSYKK 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccC
No 464
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.98 E-value=3.1e+02 Score=30.41 Aligned_cols=317 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred hhhhhhhHHhHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHHHhhhh
Q 002710 506 VSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALD 585 (890)
Q Consensus 506 ~~l~~l~~~~~~l~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~L~ 585 (890)
..+.....++.-+.....+....|+.-...+..-...+..|..++..-.-.......-+.-..-.......+.-.....-
T Consensus 236 ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~er~I 315 (654)
T KOG4809|consen 236 AELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVERII 315 (654)
T ss_pred HHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHHHHH
Q ss_pred hhhHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 586 EHSLELRVKAANEAEAACQ---QRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQ 662 (890)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~---~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~ 662 (890)
....+..+....+....|+ .+...+...+..++..+.+....+-++......+.........++..+.-.++.-.+.
T Consensus 316 erLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEe 395 (654)
T KOG4809|consen 316 ERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEE 395 (654)
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 663 NQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRH 742 (890)
Q Consensus 663 ~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 742 (890)
+..+..++........+.... -.....+..+..++.............+..+-.-+...+....+.-..+..+......
T Consensus 396 c~kme~qLkkAh~~~ddar~~-pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kd 474 (654)
T KOG4809|consen 396 CSKMEAQLKKAHNIEDDARMN-PEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKD 474 (654)
T ss_pred HHHHHHHHHHHHHhhHhhhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhh
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--H
Q 002710 743 LAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGE--A 820 (890)
Q Consensus 743 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~--~ 820 (890)
......++...-..-..+...+-..+..-+.-...-...+. +..+-....+...+++....++.......+. .
T Consensus 475 qnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sqhlq-----~eel~~alektkQel~~tkarl~stqqslaEke~ 549 (654)
T KOG4809|consen 475 QNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQHLQ-----IEELMNALEKTKQELDATKARLASTQQSLAEKEA 549 (654)
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH-----HHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHh
Q 002710 821 AIQKLQDE 828 (890)
Q Consensus 821 ~~~~l~~e 828 (890)
-+..|..+
T Consensus 550 HL~nLr~e 557 (654)
T KOG4809|consen 550 HLANLRIE 557 (654)
T ss_pred HHHHHHHH
No 465
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=56.89 E-value=9.5 Score=38.34 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=0.0
Q ss_pred cccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCcCCC
Q 002710 841 CFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 883 (890)
Q Consensus 841 C~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~ 883 (890)
++..+....++.||+.|. ....+....+.||.|+.++.++
T Consensus 116 lHG~~~~~~C~~C~~~~~---~~~~~~~~~p~C~~Cgg~lrP~ 155 (242)
T PRK00481 116 LHGSLLRARCTKCGQTYD---LDEYLKPEPPRCPKCGGILRPD 155 (242)
T ss_pred ccCCcCceeeCCCCCCcC---hhhhccCCCCCCCCCCCccCCC
No 466
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=56.85 E-value=1.2e+02 Score=25.64 Aligned_cols=89 Identities=11% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------------HhHHHHHHHHHHHHHHHHHHHH
Q 002710 642 AEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSES---------------VKTKQVQSFLLSEKQALARQLQ 706 (890)
Q Consensus 642 ~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~---------------~~~~~~~~~l~~~~~~l~~el~ 706 (890)
+..+...+..++..+..+...+..+..++.+....+..+..-- .........+...+..+...+.
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 707 QINALVESAKLRILHAEEQMKACL 730 (890)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~~~~ 730 (890)
.+...+..+...+..+...+..+.
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
No 467
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=56.36 E-value=11 Score=37.50 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred cccccCCcccccCCCcc-cHHHHHHHhccCCCCccCCCcCcCCC
Q 002710 841 CFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQS 883 (890)
Q Consensus 841 C~~~~~~~~~~~CgH~f-C~~C~~~~~~~~~~~CP~C~~~~~~~ 883 (890)
++..+...+++.|||.| .............+.||.|+..+.++
T Consensus 110 lHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~ 153 (235)
T cd01408 110 AHGSFATAHCIKCKHKYPGDWMREDIFNQEVPKCPRCGGLVKPD 153 (235)
T ss_pred eCcCCCccccccCCCcCCHHHHHHHHhCCCCccCCCCCCCccCc
No 469
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=55.95 E-value=4.8 Score=28.02 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=0.0
Q ss_pred cccccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCc
Q 002710 835 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 880 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 880 (890)
.+.|+-|+..+.-.... ....||.||.++
T Consensus 3 ~y~C~~CG~~~~~~~~~-----------------~~~~Cp~CG~~~ 31 (46)
T PRK00398 3 EYKCARCGREVELDEYG-----------------TGVRCPYCGYRI 31 (46)
T ss_pred EEECCCCCCEEEECCCC-----------------CceECCCCCCeE
No 470
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=55.89 E-value=1.4e+02 Score=26.18 Aligned_cols=85 Identities=14% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002710 706 QQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDM 785 (890)
Q Consensus 706 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l 785 (890)
..+..-...+.+.+..+.+.+...+..+ ...++.+...+.+...-....+..+..+...+..+...+..+
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhL----------sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHL----------SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 002710 786 RKELENERNERKKLE 800 (890)
Q Consensus 786 ~~~l~~~~~~~~~l~ 800 (890)
......++..+..++
T Consensus 109 ~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 109 QQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHh
No 471
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.89 E-value=3.6 Score=46.71 Aligned_cols=38 Identities=24% Similarity=0.583 Sum_probs=0.0
Q ss_pred cccccccccC-------CcccccCCCcccHHHHHHHhccCCCCccCC
Q 002710 837 KCGVCFDRPK-------EVVITKCFHLFCNPCIQRNLEIRHRKCPGC 876 (890)
Q Consensus 837 ~C~iC~~~~~-------~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C 876 (890)
.|+.|+.+.- ..+++.|||+|-..|+....-.+. |..|
T Consensus 786 rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~--~~~~ 830 (846)
T KOG2066|consen 786 RCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA--CNIE 830 (846)
T ss_pred hhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc--cChh
No 472
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=55.78 E-value=2.8e+02 Score=29.40 Aligned_cols=280 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 595 AANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERD 674 (890)
Q Consensus 595 ~~~~~~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 674 (890)
++.+....++.-+-.++..|..|...-.....-+..|+.+...+...++.-..+-+.++.-...++.........+++.+
T Consensus 108 Di~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaE 187 (558)
T PF15358_consen 108 DITELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAE 187 (558)
T ss_pred cHHHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-----------------------------------
Q 002710 675 DLNIKLVSESVKTKQVQSFLLSEKQ-----ALARQLQQINALVES----------------------------------- 714 (890)
Q Consensus 675 ~~i~~l~~e~~~~~~~~~~l~~~~~-----~l~~el~~~~~~~~~----------------------------------- 714 (890)
.+-+.+...-.-++.++.-++.++. ..+.+++.+...++.
T Consensus 188 iKtnvLkqnS~~LEekLr~lq~qLqdE~prrqe~e~qELeqkleagls~~~l~p~~~~~g~~~p~~s~~~p~~~~~l~~~ 267 (558)
T PF15358_consen 188 IKTNVLKQNSALLEEKLRYLQQQLQDETPRRQEAEWQELEQKLEAGLSRSGLPPTADSTGCPGPPGSPEEPPRPRNLAPA 267 (558)
T ss_pred HHhcccccchHHHHHHHHHHHHHhcccCcchhhhhHHHHHHHHhhhhhhcCCCccccCCCCCCCCCCCCCCCCccccccc
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002710 715 --------------AKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQR 780 (890)
Q Consensus 715 --------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~ 780 (890)
....+...-.-+..+...+..+.....+-.-.....-.-+..+.-.+..+--+.+..+.+-.....
T Consensus 268 ~~~~~~rage~~~~seq~lqk~~s~LEelRrevssLtarw~qEega~qEaLrlLgglggRldgflgqWERaQ~eq~q~ar 347 (558)
T PF15358_consen 268 GWGGGPRAGEGPELSEQELQKVSSGLEELRREVSSLTARWHQEEGAVQEALRLLGGLGGRLDGFLGQWERAQREQAQTAR 347 (558)
T ss_pred ccccCCCCCCCccccHHhhcccCccHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHhcccCcccccccccc--cCCcc-cccCCCcc
Q 002710 781 KTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDR--PKEVV-ITKCFHLF 857 (890)
Q Consensus 781 ~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~~~~~~l~~e~~~~~~~l~C~iC~~~--~~~~~-~~~CgH~f 857 (890)
.+.++....+.+-.-.++--..+..++..++-|.... ..++.+-.++...+.-..-++-.+. ...++ +-.||..+
T Consensus 348 ~lqeLR~~~delct~versavs~asLrseLeglgpvK--PilEel~Rq~~~~rrg~d~~~~ldr~~~gsCarC~sqgqql 425 (558)
T PF15358_consen 348 GLQELRGRADELCTMVERSAVSVASLRSELEGLGPVK--PILEELGRQLQNSRRGPDLSMNLDRSPQGSCARCASQGQQL 425 (558)
T ss_pred HHHHHHHhHHHHHHHHHHhHhHHHHHHHHhhcccCcc--hHHHHHHHHHHhhccCCccccCCCcCCCCchHhHhhhhhhc
Q ss_pred cHHHHHHHhcc-------------CCCCccCC
Q 002710 858 CNPCIQRNLEI-------------RHRKCPGC 876 (890)
Q Consensus 858 C~~C~~~~~~~-------------~~~~CP~C 876 (890)
-..-++..+.. -...||.|
T Consensus 426 stesLqqllerAltplvdevkqr~l~pacpsc 457 (558)
T PF15358_consen 426 STESLQQLLERALTPLVDEVKQRGLPPACPSC 457 (558)
T ss_pred CHHHHHHHHHHHhHHHHHHHHhcCCCCCChHH
No 473
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=55.68 E-value=6.8 Score=35.11 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=0.0
Q ss_pred HhcccCcccccccccccCCcccccCCCcccHHHHHHHhc
Q 002710 829 IKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLE 867 (890)
Q Consensus 829 ~~~~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~ 867 (890)
+....+...||+|+-.-. .|+.|..|......
T Consensus 87 Lk~k~nl~~CP~CGh~k~-------a~~LC~~Cy~kV~k 118 (176)
T KOG4080|consen 87 LKPKDNLNTCPACGHIKP-------AHTLCDYCYAKVHK 118 (176)
T ss_pred ccchhccccCcccCcccc-------ccccHHHHHHHHHH
No 474
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=55.37 E-value=5.7 Score=37.71 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=0.0
Q ss_pred cccccCCcccccCCCcc-cHHHHHHHhccCCCCccCCCcCcCCC
Q 002710 841 CFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQS 883 (890)
Q Consensus 841 C~~~~~~~~~~~CgH~f-C~~C~~~~~~~~~~~CP~C~~~~~~~ 883 (890)
|+..+...++..||+.| ...-...........||.|+..+.++
T Consensus 99 lHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~C~~C~~~lrp~ 142 (178)
T PF02146_consen 99 LHGSLFRLRCSKCGKEYDREDIVDSIDEEEPPRCPKCGGLLRPD 142 (178)
T ss_dssp TTEEEEEEEETTTSBEEEGHHHHHHHHTTSSCBCTTTSCBEEEE
T ss_pred HHhhhceeeecCCCccccchhhcccccccccccccccCccCCCC
No 475
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=55.34 E-value=3.5 Score=24.59 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=0.0
Q ss_pred ccCCCcCcCCCCc
Q 002710 873 CPGCGTAFGQSDV 885 (890)
Q Consensus 873 CP~C~~~~~~~d~ 885 (890)
||+|+..+....+
T Consensus 4 CPiC~~~v~~~~i 16 (26)
T smart00734 4 CPVCFREVPENLI 16 (26)
T ss_pred CCCCcCcccHHHH
No 476
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=55.17 E-value=1.1e+02 Score=33.78 Aligned_cols=71 Identities=24% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002710 747 LETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSET 817 (890)
Q Consensus 747 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~ 817 (890)
+.....-+.....++.+++.+..++..++.++...+.++...+.+.+.+...++..++..+..+.++...+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
No 477
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=55.11 E-value=4e+02 Score=31.13 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHhccCCCCcch--HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002710 536 IEKLQKDKLESQIMLDMYGQEGRDPRD--LMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAE 613 (890)
Q Consensus 536 ~~~l~~~~~~l~~~~~~~~~~~~~~~~--i~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~l~~l~~e 613 (890)
.++.-.++..++-.+..+........+ +.++-.++...-.-+=.....-+ .-.++.-+..-+..+...|...
T Consensus 329 ~~kta~KVrt~KYLLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~tn------iq~EIALA~QplrsENaqLrRr 402 (861)
T PF15254_consen 329 PNKTAEKVRTLKYLLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGSTN------IQVEIALAMQPLRSENAQLRRR 402 (861)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhcccc------chhhhHhhhhhhhhhhHHHHHH
Q ss_pred HHHHHHHHHHhHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 002710 614 IIELVAKLDASERDV-----MELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTK 688 (890)
Q Consensus 614 l~~l~~~~~~~~~~~-----~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~ 688 (890)
+.-|..++.+.++.- .+..-++..++.---.+...+.+....++.++....++..-++....+...+
T Consensus 403 Lrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~-------- 474 (861)
T PF15254_consen 403 LRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRL-------- 474 (861)
T ss_pred HHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002710 689 QVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAV 768 (890)
Q Consensus 689 ~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 768 (890)
...+...-..+-........+...++-++.+.-..++.++-.++..+.+...+...+..-..+|..|..-...+...+
T Consensus 475 --~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sm 552 (861)
T PF15254_consen 475 --RKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSM 552 (861)
T ss_pred --HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHH
Q 002710 769 TSSDKEY 775 (890)
Q Consensus 769 ~~~~~~l 775 (890)
..+-..+
T Consensus 553 a~lL~dl 559 (861)
T PF15254_consen 553 AKLLSDL 559 (861)
T ss_pred HHHhhhc
No 478
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=55.05 E-value=1.4e+02 Score=25.63 Aligned_cols=89 Identities=15% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------------HhHHHHHHHHHHHHHHHHHHH
Q 002710 641 EAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSES---------------VKTKQVQSFLLSEKQALARQL 705 (890)
Q Consensus 641 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~---------------~~~~~~~~~l~~~~~~l~~el 705 (890)
.+..+...+..++..+..+...+..+..++.+...-+..+..-- .........+...++.++..+
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i 83 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRV 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 706 QQINALVESAKLRILHAEEQMKAC 729 (890)
Q Consensus 706 ~~~~~~~~~~~~~~~~l~~~~~~~ 729 (890)
..+......+...+..++..++.+
T Consensus 84 ~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 84 KTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 479
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.74 E-value=5.1 Score=30.51 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=0.0
Q ss_pred ccccCCCcccHHHHHHHhccCCCCccCCCcCc
Q 002710 849 VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 880 (890)
Q Consensus 849 ~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 880 (890)
.++.|||.| .-++.+-+..-..||.|+.+|
T Consensus 14 ~c~~cg~~~--dvvq~~~ddplt~ce~c~a~~ 43 (82)
T COG2331 14 ECTECGNRF--DVVQAMTDDPLTTCEECGARL 43 (82)
T ss_pred eecccchHH--HHHHhcccCccccChhhChHH
No 480
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.62 E-value=2e+02 Score=27.48 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 002710 598 EAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLL----QQVAER 673 (890)
Q Consensus 598 ~~~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~----~~~~~~ 673 (890)
.+.......+..+..++..++..+..+...+.......... .+...+..++..+...+..++.++.... ..+..+
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHH
Q 002710 674 DDLNIKLVSESVKTKQVQSFLLS 696 (890)
Q Consensus 674 ~~~i~~l~~e~~~~~~~~~~l~~ 696 (890)
...+..+.....+....+..+..
T Consensus 141 ~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 141 KEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
No 481
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=54.55 E-value=1.6e+02 Score=26.42 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------------------------------
Q 002710 639 DREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESV--------------------------------- 685 (890)
Q Consensus 639 ~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~--------------------------------- 685 (890)
...+..+...+..+...+..+...+..+...+.++..-+..+..-..
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 686 ------KTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEAL 734 (890)
Q Consensus 686 ------~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 734 (890)
.+...+..+...+..+...+..+...+..+...+..+...+..+.....
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~ 139 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAA 139 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 482
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=54.45 E-value=1.3e+02 Score=25.19 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 735 RYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNK 809 (890)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~ 809 (890)
.+..++..+.....-+...+.+-+.....+...+...+..+..+..+++.+.-....+...+..++.+++.....
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~~ 76 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQK 76 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 483
>PLN02248 cellulose synthase-like protein
Probab=54.40 E-value=8.2 Score=46.36 Aligned_cols=32 Identities=25% Similarity=0.708 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHhccCCCCccCCCcCcCCCCc
Q 002710 853 CFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 885 (890)
Q Consensus 853 CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~ 885 (890)
|++..|..|.-..+++ ...||.|..++...|+
T Consensus 150 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 150 CGFKICRDCYIDAVKS-GGICPGCKEPYKVTDL 181 (1135)
T ss_pred ccchhHHhHhhhhhhc-CCCCCCCccccccccc
No 484
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=54.32 E-value=4.6 Score=22.96 Aligned_cols=10 Identities=50% Similarity=1.381 Sum_probs=0.0
Q ss_pred ccCCCcCcCC
Q 002710 873 CPGCGTAFGQ 882 (890)
Q Consensus 873 CP~C~~~~~~ 882 (890)
||.|+..|..
T Consensus 3 C~~C~~~f~~ 12 (23)
T PF00096_consen 3 CPICGKSFSS 12 (23)
T ss_dssp ETTTTEEESS
T ss_pred CCCCCCccCC
No 485
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=54.23 E-value=6 Score=39.75 Aligned_cols=38 Identities=29% Similarity=0.630 Sum_probs=0.0
Q ss_pred ccccccccCC---cccccCCCcccHHHHHHHhccCCCCccCC
Q 002710 838 CGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRHRKCPGC 876 (890)
Q Consensus 838 C~iC~~~~~~---~~~~~CgH~fC~~C~~~~~~~~~~~CP~C 876 (890)
|-.|+..... ..+-.|-|+||..|=-=.+. .-..||.|
T Consensus 333 Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHe-sLh~CpgC 373 (378)
T KOG2807|consen 333 CFACQGELLSSGRYRCESCKNVFCLDCDVFIHE-SLHNCPGC 373 (378)
T ss_pred eeeeccccCCCCcEEchhccceeeccchHHHHh-hhhcCCCc
No 486
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=54.11 E-value=6 Score=29.82 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHhHhcccCccccc--ccccccCC-------cccc-cCCCcccHHHHHHHhccCCCCc
Q 002710 825 LQDEIKDCKAILKCG--VCFDRPKE-------VVIT-KCFHLFCNPCIQRNLEIRHRKC 873 (890)
Q Consensus 825 l~~e~~~~~~~l~C~--iC~~~~~~-------~~~~-~CgH~fC~~C~~~~~~~~~~~C 873 (890)
+...|+.-....-|| -|...... .|.- .|||.||..|...|+. ...|
T Consensus 8 ~~~~i~~~~~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H~--~~~C 64 (64)
T smart00647 8 LESYVESNPDLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWHS--PVSC 64 (64)
T ss_pred HHHHHhcCCCccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCCC--CCCC
No 487
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=54.09 E-value=2 Score=33.30 Aligned_cols=34 Identities=24% Similarity=0.675 Sum_probs=0.0
Q ss_pred cccccccccCCcccccCCCcccHHHHHHHhccCCCCccCCCcCc
Q 002710 837 KCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 880 (890)
Q Consensus 837 ~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~ 880 (890)
.|-||....-.| |.-||..|.. ...-|.+||+.+
T Consensus 56 kC~iCk~~vHQ~-----GshYC~tCAY-----~KgiCAMCGKki 89 (100)
T KOG3476|consen 56 KCRICKQLVHQP-----GSHYCQTCAY-----KKGICAMCGKKI 89 (100)
T ss_pred hhHHHHHHhcCC-----cchhHhHhhh-----hhhHHHHhhhHh
No 488
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=53.92 E-value=8.3 Score=43.75 Aligned_cols=51 Identities=20% Similarity=0.452 Sum_probs=0.0
Q ss_pred cccccc--cccCCcccccCCCc-----ccHHHHHHHhc-cCCCCccCCCcCcCCCCccc
Q 002710 837 KCGVCF--DRPKEVVITKCFHL-----FCNPCIQRNLE-IRHRKCPGCGTAFGQSDVRF 887 (890)
Q Consensus 837 ~C~iC~--~~~~~~~~~~CgH~-----fC~~C~~~~~~-~~~~~CP~C~~~~~~~d~~~ 887 (890)
+|-||. +...+|..-||.-+ .-.+|+-.|.. +...+|..|.-+|.-.||+.
T Consensus 14 ~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~ 72 (1175)
T COG5183 14 SCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYK 72 (1175)
T ss_pred hceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecc
No 489
>PRK04406 hypothetical protein; Provisional
Probab=53.80 E-value=1.1e+02 Score=24.11 Aligned_cols=56 Identities=13% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002710 709 NALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWL 764 (890)
Q Consensus 709 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 764 (890)
...+..+...+..|+..+.-....++.+...+......+..+..++..+...+..+
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 490
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=53.40 E-value=6 Score=30.54 Aligned_cols=23 Identities=17% Similarity=0.525 Sum_probs=0.0
Q ss_pred cccccccccccCC--------------cccc--cCCCcc
Q 002710 835 ILKCGVCFDRPKE--------------VVIT--KCFHLF 857 (890)
Q Consensus 835 ~l~C~iC~~~~~~--------------~~~~--~CgH~f 857 (890)
++.||.|+..-.- .... .|||+|
T Consensus 1 mm~CP~Cg~~a~irtSr~~s~~~~~~Y~qC~N~eCg~tF 39 (72)
T PRK09678 1 MFHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATF 39 (72)
T ss_pred CccCCCCCCccEEEEChhcChhhheeeeecCCCCCCCEE
No 491
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.38 E-value=2.4e+02 Score=27.97 Aligned_cols=176 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHH
Q 002710 393 SLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASA 472 (890)
Q Consensus 393 ~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~el~~~~~~ 472 (890)
.++.+++.+.+.+.+-...++....-... .......+.++..|..-...+..++..+..+....+.+ -...|......
T Consensus 5 KLQ~Eid~~lKkv~EG~~~F~~i~~K~~~-~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diK-dk~~L~e~Rk~ 82 (233)
T PF04065_consen 5 KLQQEIDRTLKKVQEGVEEFDEIYEKVES-ATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIK-DKKKLLENRKL 82 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc-cHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHhhhhhhhhhhhHHhHHHhhhhHHH
Q 002710 473 LSKEMGMMEAQLNRWKE---------------------------TADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQ 525 (890)
Q Consensus 473 l~~~~~~l~~~~~~~~~---------------------------~~~~l~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~~ 525 (890)
++..+.....-....+. +...+..|..++..+...++.+.....+- ..-...
T Consensus 83 IE~~MErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKk-k~~~~~ 161 (233)
T PF04065_consen 83 IEEQMERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKK-KKDSTK 161 (233)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ccCccc
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 002710 526 MAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESER 571 (890)
Q Consensus 526 ~~el~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 571 (890)
...+..+...+....-.+..|+..+..+....-.+..|..+...+.
T Consensus 162 ~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~V~~ikedie 207 (233)
T PF04065_consen 162 QERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQVEDIKEDIE 207 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
No 492
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=53.01 E-value=95 Score=23.23 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002710 756 DAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTS 815 (890)
Q Consensus 756 ~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~ 815 (890)
+++..+..--.....+..++.......-.+...+...+.....|..++..++.+++.+.+
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 493
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.67 E-value=3.7e+02 Score=29.91 Aligned_cols=369 Identities=12% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002710 462 IKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQK 541 (890)
Q Consensus 462 ~~~el~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~~~~el~~l~~~~~~l~~ 541 (890)
...++......+.-....+..-...+......|..-...+..|-.-|....-+...-...+.....--...-----..+.
T Consensus 234 ~~ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~er 313 (654)
T KOG4809|consen 234 RLAELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVER 313 (654)
T ss_pred HHHHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHHH
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710 542 DKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKL 621 (890)
Q Consensus 542 ~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~l~~l~~el~~l~~~~ 621 (890)
.+.-|+.....-+.+ ...+|.....+..+|.. .|..++.+.......+..++.....|....
T Consensus 314 ~IerLkeqr~rderE---------~~EeIe~~~ke~kdLkE---------kv~~lq~~l~eke~sl~dlkehassLas~g 375 (654)
T KOG4809|consen 314 IIERLKEQRERDERE---------RLEEIESFRKENKDLKE---------KVNALQAELTEKESSLIDLKEHASSLASAG 375 (654)
T ss_pred HHHHhcchhhhhHHH---------HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 002710 622 DASERDVMELEEAMKSKDREAEAYIAEMETIGQAFED------MQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLL 695 (890)
Q Consensus 622 ~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~ 695 (890)
......+..+.-.+.....++......+........+ +...+.++................+..++-.-+....
T Consensus 376 lk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeve 455 (654)
T KOG4809|consen 376 LKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVE 455 (654)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002710 696 SEKQALARQLQQINALVESAKLRILHAEEQ----MKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSS 771 (890)
Q Consensus 696 ~~~~~l~~el~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 771 (890)
.+..+-...+..+...+......+..+.-. .......++.....-..+...-..+. +..+-..+...++.+...
T Consensus 456 neKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sqhlq--~eel~~alektkQel~~t 533 (654)
T KOG4809|consen 456 NEKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQHLQ--IEELMNALEKTKQELDAT 533 (654)
T ss_pred hhhccccchhhhcCchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH--HHHHHHHHHHHhhChhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHhHhcccCcccccccccccCCcc
Q 002710 772 DKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKAILKCGVCFDRPKEVV 849 (890)
Q Consensus 772 ~~~l~~l~~~l~~l~~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~~~~--~~~~~l~~e~~~~~~~l~C~iC~~~~~~~~ 849 (890)
...+...+.-+.+-..-+.++.....+.-.++-..+.-...-..-... ........-+........--+|. .|..|+
T Consensus 534 karl~stqqslaEke~HL~nLr~errk~Lee~lemK~~a~k~~i~~d~~~~~~~~~~~~~~k~~~ev~~~~~~-k~~~~~ 612 (654)
T KOG4809|consen 534 KARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKKPAWKPGIHADMWRETHKPSNETVTKGSTEVTLAECL-KWLTTF 612 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCHHHHHHHhhhhhhHHHhhHHHHHHHHHH-ccccHH
Q ss_pred cc
Q 002710 850 IT 851 (890)
Q Consensus 850 ~~ 851 (890)
++
T Consensus 613 ql 614 (654)
T KOG4809|consen 613 QL 614 (654)
T ss_pred HH
No 494
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=52.67 E-value=2.4e+02 Score=27.77 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
Q 002710 600 EAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQN------------QHLL 667 (890)
Q Consensus 600 ~~~l~~~l~~l~~el~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~------------~~~~ 667 (890)
...+..-++.++.=..-|...+.++...+..+...+.........+..++......+..+.... ....
T Consensus 11 ~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al 90 (221)
T PF04012_consen 11 KANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREAL 90 (221)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002710 668 QQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNL 747 (890)
Q Consensus 668 ~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (890)
.....+...+..+...+..+...+..+...+..+...+..+......+..... .......+...+..+. .......+
T Consensus 91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~-~a~a~~~~~~~~~~~~--~~~a~~~~ 167 (221)
T PF04012_consen 91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN-AAKAQKKVNEALASFS--VSSAMDSF 167 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCC--ccchHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHH
Q 002710 748 ETTKWELADAEKELKWLKSAV---TSSDKEYEQI 778 (890)
Q Consensus 748 ~~~~~~i~~l~~~~~~~~~~~---~~~~~~l~~l 778 (890)
+.++..+..+.........-. ..+..++..+
T Consensus 168 er~e~ki~~~ea~a~a~~el~~~~~~~e~~l~~~ 201 (221)
T PF04012_consen 168 ERMEEKIEEMEARAEASAELADSDQDLEAELEEL 201 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHh
No 495
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=52.50 E-value=3 Score=31.49 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHhHhcccCcccccc--cccccCC-----c--cccc-CCCcccHHHHHHHhccCCCCc
Q 002710 825 LQDEIKDCKAILKCGV--CFDRPKE-----V--VITK-CFHLFCNPCIQRNLEIRHRKC 873 (890)
Q Consensus 825 l~~e~~~~~~~l~C~i--C~~~~~~-----~--~~~~-CgH~fC~~C~~~~~~~~~~~C 873 (890)
++.-+..-.....||- |...+.. . ++-+ |||.||..|-..|+. ...|
T Consensus 8 ~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~--~~~C 64 (64)
T PF01485_consen 8 LKRYLESDPNIRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPWHE--GVTC 64 (64)
T ss_dssp CHS---S---CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSESCT--TS-H
T ss_pred HHHHHHCCCCccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcccCC--CCCC
No 496
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=52.27 E-value=5.9e+02 Score=32.17 Aligned_cols=573 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002710 210 IIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYA----DQIENYISSHSVDQAEIQHLAETMAELEESRRKLVSLKMQKDI 285 (890)
Q Consensus 210 ~~~l~~~~~~~~~e~~~~~~~l~~~~~~~~~~~----~~l~~~~~~~~~~~~~l~~l~~~~~~le~~~~~~~~~~~~~~~ 285 (890)
...+......+..........+..+..++..+. ..+..+...+..+......+......+..
T Consensus 179 ~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~-------------- 244 (1047)
T PRK10246 179 TEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQQQQ-------------- 244 (1047)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q ss_pred ccCccccCccccccCCCCCCCCCCcccccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhh
Q 002710 286 ASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVH 365 (890)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~ 365 (890)
.......+..+...+......+..+.............+..--.......
T Consensus 245 ------------------------------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~e~a~~l~~ 294 (1047)
T PRK10246 245 ------------------------------SLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRP 294 (1047)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhCch
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhchHHHHHhhhhchhHHHHHHHHHHHHHHH
Q 002710 366 SSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVL----RREKEINVRAESADAARNTVDDSESRIERLEVQLQKSII 441 (890)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~e~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 441 (890)
....+..+...+......+......+........... .........+...................+ ..+.....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~-~~~~~~~~ 373 (1047)
T PRK10246 295 HWERIQEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQSLNTWLAEHDRFRQWNNEL-AGWRAQFS 373 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhhhhhHHhHH
Q 002710 442 EKNDLGLKMEEAIQDSGRKDIKAEFRVMASALS-KEMGMMEAQLNRWKETA---DEALSLREKAVSLKVSLSAKTNEQKR 517 (890)
Q Consensus 442 ~~~~l~~~l~~~~~~~~~~~~~~el~~~~~~l~-~~~~~l~~~~~~~~~~~---~~l~~l~~~~~~l~~~l~~l~~~~~~ 517 (890)
.+......+........ .....+........ ............+.... ..+..+...+..+...+..+......
T Consensus 374 ~l~~~~~~l~~l~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (1047)
T PRK10246 374 QQTSDREQLRQWQQQLT--HAEQKLNALPAITLTLTADEVAAALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLQVAIQN 451 (1047)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-----------------------------------ccCCCCcch
Q 002710 518 LTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMY-----------------------------------GQEGRDPRD 562 (890)
Q Consensus 518 l~~~~~~~~~el~~l~~~~~~l~~~~~~l~~~~~~~-----------------------------------~~~~~~~~~ 562 (890)
+...+......+..+...+..+...+..+....... .........
T Consensus 452 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~L~~GePCPVCGS~~HP~~~~~~~~~~~~~~~~ 531 (1047)
T PRK10246 452 VTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKDLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSR 531 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCcccCcCchhhccCCcchHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHhHH
Q 002710 563 LMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDAS---ERDVMELEEAMKSKD 639 (890)
Q Consensus 563 i~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~l~~l~~el~~l~~~~~~~---~~~~~~l~~~~~~~~ 639 (890)
+..+...+..+......+...+..... ...........+...+..+......+...+... ...+......+....
T Consensus 532 l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 609 (1047)
T PRK10246 532 LDALEKEVKKLGEEGAALRGQLDALTK--QLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHE 609 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHH---hHHhHH
Q 002710 640 REAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDL----------------------------NIKLVS---ESVKTK 688 (890)
Q Consensus 640 ~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------------i~~l~~---e~~~~~ 688 (890)
..+..... ...+...+..+...+..+...+..+... ...+.. .+..+.
T Consensus 610 ~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 688 (1047)
T PRK10246 610 RQLRLLSQ-RHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQEAQSWQQRQNELTALQ 688 (1047)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q 002710 689 QVQSFLLSEKQAL--------------ARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRH------------ 742 (890)
Q Consensus 689 ~~~~~l~~~~~~l--------------~~el~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------ 742 (890)
..+..+......+ ...+......+..+...+..+...+......+......+..
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~~~ 768 (1047)
T PRK10246 689 NRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQA 768 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q ss_pred ------HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Q 002710 743 ------LAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQ-----------------IQRKTEDMRKELENERNERKKL 799 (890)
Q Consensus 743 ------~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~-----------------l~~~l~~l~~~l~~~~~~~~~l 799 (890)
-...+..+...+..+...+......+..+...+.. +...+..+...+......+..+
T Consensus 769 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 848 (1047)
T PRK10246 769 FLAALLDEETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEI 848 (1047)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhhH-HHHHHHHHhHhcc
Q 002710 800 EEELMEVNNKVAELTSETGE-AAIQKLQDEIKDC 832 (890)
Q Consensus 800 ~~e~~~l~~~l~~l~~~~~~-~~~~~l~~e~~~~ 832 (890)
...+..+......+...... .....--..+..+
T Consensus 849 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 882 (1047)
T PRK10246 849 RQQLKQDADNRQQQQALMQQIAQATQQVEDWGYL 882 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=52.26 E-value=1e+02 Score=23.71 Aligned_cols=52 Identities=13% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002710 714 SAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLK 765 (890)
Q Consensus 714 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 765 (890)
.+...+..++..+.-....++.+...+......+..++..+..+...+..+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 498
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=52.22 E-value=5.9 Score=31.16 Aligned_cols=39 Identities=31% Similarity=0.772 Sum_probs=0.0
Q ss_pred cccccccccCCcccccCCCcc-cHHHHHHHhccCCCCccCCCcCcCCCC
Q 002710 837 KCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 837 ~C~iC~~~~~~~~~~~CgH~f-C~~C~~~~~~~~~~~CP~C~~~~~~~d 884 (890)
.|+|| +..+.||.-+- |..|.-.. .+..|-+|+. .+.+|
T Consensus 29 kC~IC-----DS~VRP~tlVRiC~eC~~Gs---~q~~ciic~~-~gV~d 68 (110)
T KOG1705|consen 29 KCVIC-----DSYVRPCTLVRICDECNYGS---YQGRCVICGG-VGVSD 68 (110)
T ss_pred ccccc-----ccccccceeeeeehhcCCcc---ccCceEEecC-Ccccc
No 499
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=52.20 E-value=4.8 Score=34.91 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHhccCCCC--ccCCCcC
Q 002710 854 FHLFCNPCIQRNLEIRHRK--CPGCGTA 879 (890)
Q Consensus 854 gH~fC~~C~~~~~~~~~~~--CP~C~~~ 879 (890)
+..+|..|-..+--..... ||.|+.+
T Consensus 70 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 70 VELECKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred CEEEhhhCCCccccCCccCCcCcCCCCC
No 500
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=52.08 E-value=8.5 Score=38.32 Aligned_cols=31 Identities=26% Similarity=0.635 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHhcc--------------------------------------CCCCccCCCcCcCCC
Q 002710 853 CFHLFCNPCIQRNLEI--------------------------------------RHRKCPGCGTAFGQS 883 (890)
Q Consensus 853 CgH~fC~~C~~~~~~~--------------------------------------~~~~CP~C~~~~~~~ 883 (890)
||-.||..|...++.. ..+.||.|+.|.-.+
T Consensus 342 Cgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~as~~TIk~tTkpCPkChvptErn 410 (446)
T KOG0006|consen 342 CGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAASKETIKKTTKPCPKCHVPTERN 410 (446)
T ss_pred chhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhhhhhhhhhccCCCCCccCccccC
Done!