Query 002710
Match_columns 890
No_of_seqs 465 out of 2850
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 18:12:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002710.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1426-1430//hhsearch_pdb/002710hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2l_A CHIP, carboxy terminus 1.0 1 1 115.3 2.6 59 831-889 204-262 (281)
2 1i84_S Smooth muscle myosin he 1.0 1 1 113.7 6.9 24 795-818 1145-1168(1184)
3 4ayc_A E3 ubiquitin-protein li 1.0 1 1 112.5 8.9 49 835-884 53-101 (138)
4 3fl2_A E3 ubiquitin-protein li 1.0 1 1 109.2 3.8 58 832-889 49-107 (124)
5 2f42_A STIP1 homology and U-bo 1.0 1 1 108.3 8.7 60 830-889 101-160 (179)
6 1z6u_A NP95-like ring finger p 1.0 1 1 108.0 3.1 57 833-889 76-133 (150)
7 2y1n_A E3 ubiquitin-protein li 1.0 1 1 105.5 4.0 56 832-887 329-384 (389)
8 1i84_S Smooth muscle myosin he 1.0 1 1 105.2 11.1 14 170-183 425-438 (1184)
9 3lrq_A E3 ubiquitin-protein li 1.0 1 1 104.9 2.6 61 830-890 17-78 (100)
10 2ckl_B Ubiquitin ligase protei 1.0 1 1 103.7 1.6 57 831-887 50-108 (165)
No 1
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=1.00 E-value=1 Score=115.34 Aligned_cols=59 Identities=17% Similarity=0.069 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 14574512222134478621458884458778887321888755777576889963345
Q 002710 831 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 831 ~~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
..-..+.||||++.|++||+++|||+||..||..|+......||+||.+|...++.|++
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~ 262 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 262 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECH
T ss_pred CCCCCCCCCCCCCHHCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCH
T ss_conf 99966179273887138859999897779999999987879996978999521086169
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=113.71 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999989998654432
Q 002710 795 ERKKLEEELMEVNNKVAELTSETG 818 (890)
Q Consensus 795 ~~~~l~~e~~~l~~~l~~l~~~~~ 818 (890)
....+..++..++..+..+...+.
T Consensus 1145 q~~~L~~ele~L~~~Ieel~~vn~ 1168 (1184)
T 1i84_S 1145 QKRDLSEELEALKTELEDTLDTTA 1168 (1184)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998766799
No 3
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=1.00 E-value=1 Score=112.47 Aligned_cols=49 Identities=31% Similarity=0.668 Sum_probs=44.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 45122221344786214588844587788873218887557775768899
Q 002710 835 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 884 (890)
Q Consensus 835 ~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d 884 (890)
.+.|+||++.|.+||++||||+||..|+..|+. +...||+||.+|...+
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCEE
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHH-CCCCCCCCCCCCCCCC
T ss_conf 599756272327966788999846999999997-6996999998278899
No 4
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=109.16 Aligned_cols=58 Identities=21% Similarity=0.564 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 457451222213447862145888445877888732188875577757688-9963345
Q 002710 832 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ-SDVRFVK 889 (890)
Q Consensus 832 ~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~-~d~~~~~ 889 (890)
+...+.|+||++.|.+||+++|||+||..|+..|+......||.||..|.. .++.+++
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 107 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQ 107 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCH
T ss_pred CCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 75389998689577694772287914499999999678098999986589988778789
No 5
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=1.00 E-value=1 Score=108.34 Aligned_cols=60 Identities=15% Similarity=0.066 Sum_probs=53.6
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 414574512222134478621458884458778887321888755777576889963345
Q 002710 830 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 889 (890)
Q Consensus 830 ~~~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~ 889 (890)
..+...+.||||++.|.+||+++|||+||..||..|+...+..||+||.+|...++.|++
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred CCCCHHHCCCCCCCCCCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHH
T ss_conf 589276164470341789848899897878999999996889897984999856281359
No 6
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=107.99 Aligned_cols=57 Identities=28% Similarity=0.625 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 574512222134478621458884458778887321888755777576889-963345
Q 002710 833 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS-DVRFVK 889 (890)
Q Consensus 833 ~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~-d~~~~~ 889 (890)
...+.|+||++.|.+||+++|||+||..||..|+......||+||..|... ++.+++
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~ 133 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNE 133 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCH
T ss_pred CCCCEEECCCHHHCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 4279900579042598882899903199999999839895999883578877788798
No 7
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=1.00 E-value=1 Score=105.51 Aligned_cols=56 Identities=25% Similarity=0.567 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45745122221344786214588844587788873218887557775768899633
Q 002710 832 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 887 (890)
Q Consensus 832 ~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~ 887 (890)
......|+||++.+.+|+++||||+||..|+..|+..+...||+||..+....+..
T Consensus 329 ~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE
T ss_conf 67899897157688883874799833179999999659998999988267760575
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=105.18 Aligned_cols=14 Identities=7% Similarity=-0.007 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 52899999999999
Q 002710 170 SRHSSARELMKFIE 183 (890)
Q Consensus 170 ~~~~~~~~~l~~~~ 183 (890)
.+.+-.+....+++
T Consensus 425 ~rdalak~lY~~lF 438 (1184)
T 1i84_S 425 AIEALAKAKFERLF 438 (1184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 9
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=1.00 E-value=1 Score=104.86 Aligned_cols=61 Identities=20% Similarity=0.617 Sum_probs=52.9
Q ss_pred HCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 414574512222134478621-4588844587788873218887557775768899633459
Q 002710 830 KDCKAILKCGVCFDRPKEVVI-TKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 890 (890)
Q Consensus 830 ~~~~~~l~C~iC~~~~~~~~~-~~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 890 (890)
..+...+.|+||++.|.+|++ ++|||+||..||..|+......||.||..|...++.++++
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~ 78 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 45887889962892300866658999842299999999778498988888489999576388
No 10
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=1.00 E-value=1 Score=103.66 Aligned_cols=57 Identities=30% Similarity=0.706 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 145745122221344786214-588844587788873218887557775768899-633
Q 002710 831 DCKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD-VRF 887 (890)
Q Consensus 831 ~~~~~l~C~iC~~~~~~~~~~-~CgH~fC~~C~~~~~~~~~~~CP~C~~~~~~~d-~~~ 887 (890)
.+...+.|+||++.|.+|+++ +|||+||..|+..|+..+...||.||..|...+ +.+
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~ 108 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRP 108 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEE
T ss_pred HCCCCCCCCCCCHHHHCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 07999999626927639388489989628999999998682979999980788566886
Done!