BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002711
(889 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/173 (67%), Positives = 144/173 (83%)
Query: 122 TKSGAARALKGLKFITKNVGTEGWGEVEKRFDELAVDGMLPKSSFGQCIGMNESKDFASE 181
TKS AA ALKGL+F+T VG +GW VEKRF++L VDG+L +S FG+CIGM+ S +FA +
Sbjct: 4 TKSSAAVALKGLQFVTAKVGNDGWAAVEKRFNQLQVDGVLLRSRFGKCIGMDGSDEFAVQ 63
Query: 182 LFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEI 241
+FD+LAR+RG+ +TK EL+ F+EQ+TDQ FD RL TFFDMVDKN DGR+T EEVKEI
Sbjct: 64 MFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEI 123
Query: 242 IALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAPSQSA 294
IALSASANKLSKI+ER +EY ALIMEELDP NLGYIE+ +LE LLLQ+PS++A
Sbjct: 124 IALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQSPSEAA 176
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 106/216 (49%), Gaps = 40/216 (18%)
Query: 684 LLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDV----LNNIKQQKEIEEGITED 739
+ +DGP+G ++D Y+V++LVG GIG TP SI+K V NN K
Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLK--------- 51
Query: 740 GGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVM----NEVAEYDQDGVIELHNYCTS 795
K+ YFYW+ R+ +FEWF ++ +++ E + G + + Y T
Sbjct: 52 -------------LKKIYFYWLCRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTG 98
Query: 796 VYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGV 855
++E A ++HH + D+++G + KT + RPNW FK +A +H + R+GV
Sbjct: 99 -WDESQANHF------AVHHDEEK-DVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGV 150
Query: 856 FYCGAPGLTGELRR--LSQDFSRKTTTKFDFHKENF 889
F CG L L + +S S F F+KENF
Sbjct: 151 FLCGPEALAETLSKQSISNSESGPRGVHFIFNKENF 186
>pdb|1R6E|A Chain A, Solution Structure Of The Catalytic Domain Of Sope2
Length = 168
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Query: 673 GQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEI 732
G A P + + A + KD LL+ G+ TP + I + N EI
Sbjct: 26 GNASKDPAYARQTCEAILSAVYSNNKDQCCKLLISKGVSITPFLKEIGEAAQNAGLPGEI 85
Query: 733 EEGITEDGGATKNSKKKPF----ATKRAYFYWVTREQGSFEWF--RGVMNEVAEYDQDGV 786
+ G+ GGA N P + K + + +Q SF+ + + VM EV G
Sbjct: 86 KNGVFTPGGAGANPFVVPLIASASIKYPHMFINHNQQVSFKAYAEKIVMKEVTPLFNKGT 145
Query: 787 I 787
+
Sbjct: 146 M 146
>pdb|1R9K|A Chain A, Representative Solution Structure Of The Catalytic Domain
Of Sope2
Length = 172
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Query: 673 GQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEI 732
G A P + + A + KD LL+ G+ TP + I + N EI
Sbjct: 30 GNASKDPAYARQTCEAILSAVYSNNKDQCCKLLISKGVSITPFLKEIGEAAQNAGLPGEI 89
Query: 733 EEGITEDGGATKNSKKKPF----ATKRAYFYWVTREQGSFEWF--RGVMNEVAEYDQDGV 786
+ G+ GGA N P + K + + +Q SF+ + + VM EV G
Sbjct: 90 KNGVFTPGGAGANPFVVPLIASASIKYPHMFINHNQQVSFKAYAEKIVMKEVTPLFNKGT 149
Query: 787 I 787
+
Sbjct: 150 M 150
>pdb|2IA0|A Chain A, Transcriptional Regulatory Protein Pf0864 From Pyrococcus
Furiosus A Member Of The Asnc Family (Pf0864)
pdb|2IA0|B Chain B, Transcriptional Regulatory Protein Pf0864 From Pyrococcus
Furiosus A Member Of The Asnc Family (Pf0864)
Length = 171
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 219 ETFFDMVDKNL------DGRITEEEVKEIIALSASA--NKLSKIQER--VEEYAALIMEE 268
E D +D+N+ D R+T E+ E + S ++ K+QER +E Y ++ E+
Sbjct: 12 EIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71
Query: 269 LDPHNLGYIEL 279
L P +L I L
Sbjct: 72 LKPKHLALIVL 82
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNL 274
+ L F M DKN DG I EE+K I L A+ ++ ++ +EE +M++ D +N
Sbjct: 94 EEELSDLFRMFDKNADGYIDLEELK--IMLQATGETIT--EDDIEE----LMKDGDKNND 145
Query: 275 GYIE 278
G I+
Sbjct: 146 GRID 149
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNL 274
+ L F M DKN DG I EE+K I L A+ ++ ++ +EE +M++ D +N
Sbjct: 94 EEELSDLFRMFDKNADGYIDLEELK--IMLQATGETIT--EDDIEE----LMKDGDKNND 145
Query: 275 GYIE 278
G I+
Sbjct: 146 GRID 149
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNL 274
+ L F M DKN DG I EE+K I L A+ ++ ++ +EE +M++ D +N
Sbjct: 94 EEELSDLFRMFDKNADGYIDLEELK--IMLQATGETIT--EDDIEE----LMKDGDKNND 145
Query: 275 GYIE 278
G I+
Sbjct: 146 GRID 149
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I
Length = 81
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNL 274
+ L F M DKN DG I EE+K I L A+ ++ ++ +EE +M++ D +N
Sbjct: 14 EEELSDLFRMFDKNADGYIDLEELK--IMLQATGETIT--EDDIEE----LMKDGDKNND 65
Query: 275 GYIE 278
G I+
Sbjct: 66 GRID 69
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNL 274
+ L F M DKN DG I EE+K I L A+ ++ ++ +EE +M++ D +N
Sbjct: 6 EEELSDLFRMFDKNADGYIDLEELK--IMLQATGETIT--EDDIEE----LMKDGDKNND 57
Query: 275 GYIE 278
G I+
Sbjct: 58 GRID 61
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNL 274
+ L F M DKN DG I EE+K I L A+ ++ ++ +EE +M++ D +N
Sbjct: 4 EEELSDLFRMFDKNADGYIDLEELK--IMLQATGETIT--EDDIEE----LMKDGDKNND 55
Query: 275 GYIE 278
G I+
Sbjct: 56 GRID 59
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNL 274
+ L F M DKN DG I EE+K I L A+ ++ ++ +EE +M++ D +N
Sbjct: 9 EEELSDLFRMFDKNADGYIDLEELK--IMLQATGETIT--EDDIEE----LMKDGDKNND 60
Query: 275 GYIE 278
G I+
Sbjct: 61 GRID 64
>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Miconazole
pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
Length = 403
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 20/130 (15%)
Query: 602 KYTSGQY--IFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTLGDWTSQLKSIFAKVCQP 659
+ GQY + ++ A+ Q +S++ P I ++ G QP
Sbjct: 184 NFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRSYRISVKREGGGP-----------QP 232
Query: 660 PSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISII 719
P S LL + D ++ + PYG+ D ++L+ G+G TP++S++
Sbjct: 233 PGY-VSNLLHDHVNVGD------QVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSML 285
Query: 720 KDVLNNIKQQ 729
K L +Q
Sbjct: 286 KVALQAPPRQ 295
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 20/130 (15%)
Query: 602 KYTSGQY--IFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTLGDWTSQLKSIFAKVCQP 659
+ GQY + ++ A+ Q +S++ P I ++ G QP
Sbjct: 184 NFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRTYRISVKREGGGP-----------QP 232
Query: 660 PSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISII 719
P S LL + D ++ + PYG+ D ++L+ G+G TP++S++
Sbjct: 233 PGY-VSNLLHDHVNVGD------QVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSML 285
Query: 720 KDVLNNIKQQ 729
K L +Q
Sbjct: 286 KVALQAPPRQ 295
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 106 ELKRMASSKRFDKVDRTKSGAARALKGLKFITKNVGTEGWGE-VEKRFDELAVDGMLPKS 164
E ++ + FD D +G +K LK + +G E E ++K E+ +G K
Sbjct: 2 EEQKQEIREAFDLFDADGTGTID-VKELKVAMRALGFEPKKEEIKKMISEIDKEGT-GKM 59
Query: 165 SFGQCI-----GMNESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLE 219
+FG + M+E KD E+ A + I+ L+ +++ + D L+
Sbjct: 60 NFGDFLTVMTQKMSE-KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQ 118
Query: 220 TFFDMVDKNLDGRITEEEVKEII 242
D D++ DG ++E+E I+
Sbjct: 119 EMIDEADRDGDGEVSEQEFLRIM 141
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 217 RLETFFDMVDKNLDGRITEEEVKE-IIALSASANKLSKIQERVEEYAALIMEELDPHNLG 275
L F +DKN DG++ ++E+ E L N+L +++ VEE I++E+D G
Sbjct: 356 ELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELK-NVEEEVDNILKEVDFDKNG 414
Query: 276 YIE 278
YIE
Sbjct: 415 YIE 417
>pdb|2OL5|A Chain A, Crystal Structure Of A Protease Synthase And Sporulation
Negative Regulatory Protein Pai 2 From Bacillus
Stearothermophilus
pdb|2OL5|B Chain B, Crystal Structure Of A Protease Synthase And Sporulation
Negative Regulatory Protein Pai 2 From Bacillus
Stearothermophilus
Length = 202
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 531 VLFIIHGYFLYLSKKWYKRT----TWMYLAVPV 559
VL I HG Y+S WY+ TW Y+AV V
Sbjct: 70 VLAIFHGPHCYISPSWYETNQAVPTWNYVAVHV 102
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 106 ELKRMASSKRFDKVDRTKSGAARALKGLKFITKNVGTEGWGE-VEKRFDELAVDGMLPKS 164
E ++ + FD D SG A K LK + +G E E ++K E+ DG
Sbjct: 24 EEQKQEIREAFDLFDTDGSGTIDA-KELKVAMRALGFEPKKEEIKKMISEIDKDGS-GTI 81
Query: 165 SFGQCIGMNESK----DFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLET 220
F + + M +K D E+ A S +IT +LR +++ + + L+
Sbjct: 82 DFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQE 141
Query: 221 FFDMVDKNLDGRITEEEVKEII 242
D+N D I E+E I+
Sbjct: 142 MIAEADRNDDNEIDEDEFIRIM 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,251,817
Number of Sequences: 62578
Number of extensions: 1088251
Number of successful extensions: 2701
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2683
Number of HSP's gapped (non-prelim): 36
length of query: 889
length of database: 14,973,337
effective HSP length: 107
effective length of query: 782
effective length of database: 8,277,491
effective search space: 6472997962
effective search space used: 6472997962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)