Query 002711
Match_columns 889
No_of_seqs 613 out of 4394
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:36:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0039 Ferric reductase, NADH 100.0 1E-101 3E-106 915.7 47.4 644 194-889 2-646 (646)
2 PLN02631 ferric-chelate reduct 100.0 8.3E-59 1.8E-63 545.8 36.2 367 340-798 108-492 (699)
3 PLN02292 ferric-chelate reduct 100.0 2.2E-58 4.8E-63 543.5 38.8 340 372-798 167-512 (702)
4 PLN02844 oxidoreductase/ferric 100.0 8.4E-58 1.8E-62 540.0 42.4 468 340-889 110-720 (722)
5 COG4097 Predicted ferric reduc 100.0 8E-39 1.7E-43 337.4 29.1 380 382-889 48-435 (438)
6 cd06186 NOX_Duox_like_FAD_NADP 100.0 1.8E-32 4E-37 285.7 23.7 205 581-889 2-210 (210)
7 cd06195 FNR1 Ferredoxin-NADP+ 99.9 3.2E-26 6.9E-31 244.0 21.9 228 580-889 2-241 (241)
8 cd06197 FNR_like_2 FAD/NAD(P) 99.9 3.4E-26 7.3E-31 240.2 21.5 191 583-889 3-219 (220)
9 cd06216 FNR_iron_sulfur_bindin 99.9 7.7E-26 1.7E-30 241.4 24.3 233 564-889 2-243 (243)
10 cd06189 flavin_oxioreductase N 99.9 5.5E-26 1.2E-30 239.5 22.1 220 579-889 2-224 (224)
11 cd06198 FNR_like_3 NAD(P) bind 99.9 6.9E-26 1.5E-30 237.3 22.3 207 588-889 7-215 (216)
12 cd06184 flavohem_like_fad_nad_ 99.9 1.3E-25 2.8E-30 240.2 24.7 231 575-889 6-243 (247)
13 PRK08051 fre FMN reductase; Va 99.9 1.6E-25 3.4E-30 237.3 21.9 223 576-889 3-229 (232)
14 cd06215 FNR_iron_sulfur_bindin 99.9 3E-25 6.6E-30 234.8 22.6 225 579-889 2-231 (231)
15 cd06217 FNR_iron_sulfur_bindin 99.9 3.9E-25 8.5E-30 234.6 23.3 229 575-889 1-235 (235)
16 cd06191 FNR_iron_sulfur_bindin 99.9 3.3E-25 7.1E-30 234.7 22.3 226 579-889 2-231 (231)
17 cd06213 oxygenase_e_transfer_s 99.9 4.3E-25 9.3E-30 233.2 23.1 222 577-889 2-227 (227)
18 cd06194 FNR_N-term_Iron_sulfur 99.9 3.4E-25 7.4E-30 233.1 21.1 216 581-889 2-221 (222)
19 cd06190 T4MO_e_transfer_like T 99.9 5.9E-25 1.3E-29 232.8 22.7 227 581-889 2-231 (232)
20 cd06212 monooxygenase_like The 99.9 6.8E-25 1.5E-29 232.4 22.9 225 577-889 2-231 (232)
21 cd06209 BenDO_FAD_NAD Benzoate 99.9 8.5E-25 1.8E-29 231.0 23.0 221 577-889 3-227 (228)
22 cd06210 MMO_FAD_NAD_binding Me 99.9 8.5E-25 1.8E-29 232.2 23.0 225 576-889 2-235 (236)
23 cd06214 PA_degradation_oxidore 99.9 1.7E-24 3.8E-29 230.5 24.8 230 576-889 2-240 (241)
24 cd06187 O2ase_reductase_like T 99.9 8.6E-25 1.9E-29 230.2 21.6 220 581-889 2-224 (224)
25 cd06211 phenol_2-monooxygenase 99.9 1.4E-24 3.1E-29 230.9 22.6 227 576-889 7-238 (238)
26 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 1.5E-24 3.2E-29 244.1 23.8 231 576-889 2-241 (352)
27 cd00322 FNR_like Ferredoxin re 99.9 1.8E-24 3.9E-29 227.2 21.0 209 583-875 3-214 (223)
28 cd06188 NADH_quinone_reductase 99.9 1.4E-24 3.1E-29 236.8 20.8 230 576-889 10-283 (283)
29 PRK10684 HCP oxidoreductase, N 99.9 4.6E-24 9.9E-29 238.0 22.6 225 576-889 10-237 (332)
30 cd06196 FNR_like_1 Ferredoxin 99.9 3.7E-24 8E-29 224.6 20.3 205 577-876 2-210 (218)
31 PRK07609 CDP-6-deoxy-delta-3,4 99.9 5.3E-24 1.2E-28 238.4 22.1 227 574-889 101-332 (339)
32 PRK13289 bifunctional nitric o 99.9 1.4E-23 3.1E-28 240.2 25.2 233 574-889 153-392 (399)
33 PRK11872 antC anthranilate dio 99.9 1.1E-23 2.4E-28 235.5 21.7 224 575-889 106-335 (340)
34 PF08030 NAD_binding_6: Ferric 99.9 2.4E-24 5.1E-29 213.9 14.3 153 700-872 1-156 (156)
35 cd06221 sulfite_reductase_like 99.9 1.9E-23 4E-28 224.2 20.9 207 581-876 2-214 (253)
36 PRK00054 dihydroorotate dehydr 99.9 5.1E-23 1.1E-27 220.5 24.1 148 575-777 4-151 (250)
37 cd06183 cyt_b5_reduct_like Cyt 99.9 3.1E-23 6.7E-28 219.8 22.1 217 579-876 2-226 (234)
38 PRK10926 ferredoxin-NADP reduc 99.9 4E-23 8.7E-28 220.9 23.1 215 575-874 4-228 (248)
39 cd06218 DHOD_e_trans FAD/NAD b 99.9 4.2E-23 9.1E-28 220.6 23.1 209 581-889 2-213 (246)
40 PRK08345 cytochrome-c3 hydroge 99.9 5.9E-23 1.3E-27 224.4 24.2 225 575-876 5-236 (289)
41 COG1018 Hmp Flavodoxin reducta 99.9 2.5E-22 5.4E-27 214.9 24.2 222 574-889 4-230 (266)
42 PRK05713 hypothetical protein; 99.9 7.1E-23 1.5E-27 226.4 20.1 212 576-889 92-308 (312)
43 cd06185 PDR_like Phthalate dio 99.9 1.6E-22 3.4E-27 211.1 21.4 202 582-889 2-210 (211)
44 cd06220 DHOD_e_trans_like2 FAD 99.9 2.5E-22 5.4E-27 212.9 22.4 200 578-889 1-200 (233)
45 cd06219 DHOD_e_trans_like1 FAD 99.9 2.9E-22 6.3E-27 214.4 22.9 144 579-779 2-148 (248)
46 cd06192 DHOD_e_trans_like FAD/ 99.9 2.2E-22 4.7E-27 214.8 21.4 144 581-778 2-147 (243)
47 PRK08221 anaerobic sulfite red 99.9 5.3E-22 1.2E-26 214.0 22.6 207 577-876 9-216 (263)
48 PLN03116 ferredoxin--NADP+ red 99.9 7.4E-22 1.6E-26 217.5 24.0 236 576-875 25-282 (307)
49 PTZ00274 cytochrome b5 reducta 99.9 8.8E-22 1.9E-26 217.0 23.3 224 572-869 49-280 (325)
50 PRK05464 Na(+)-translocating N 99.9 5.4E-22 1.2E-26 227.2 21.9 230 576-889 134-407 (409)
51 cd06208 CYPOR_like_FNR These f 99.9 2.2E-21 4.7E-26 212.0 24.7 233 577-875 10-262 (286)
52 PRK06222 ferredoxin-NADP(+) re 99.9 2.2E-21 4.7E-26 211.2 22.7 200 578-875 2-204 (281)
53 TIGR02911 sulfite_red_B sulfit 99.9 2.4E-21 5.1E-26 208.7 22.0 207 577-876 7-214 (261)
54 TIGR01941 nqrF NADH:ubiquinone 99.9 1.3E-21 2.8E-26 223.8 20.0 230 576-889 130-403 (405)
55 PRK05802 hypothetical protein; 99.9 5.3E-21 1.1E-25 211.0 23.8 150 576-779 65-223 (320)
56 cd06182 CYPOR_like NADPH cytoc 99.9 9E-21 1.9E-25 204.7 22.8 208 587-876 14-239 (267)
57 cd06200 SiR_like1 Cytochrome p 99.9 1.6E-20 3.4E-25 200.6 22.4 149 589-794 17-175 (245)
58 PTZ00319 NADH-cytochrome B5 re 99.9 1.2E-20 2.7E-25 207.0 20.8 221 573-875 31-291 (300)
59 PLN03115 ferredoxin--NADP(+) r 99.9 4.9E-20 1.1E-24 205.4 23.6 227 588-877 108-344 (367)
60 cd06201 SiR_like2 Cytochrome p 99.8 9.8E-20 2.1E-24 199.0 23.2 212 574-876 44-269 (289)
61 COG0543 UbiB 2-polyprenylpheno 99.8 2.2E-19 4.7E-24 192.1 23.2 204 577-876 9-216 (252)
62 TIGR03224 benzo_boxA benzoyl-C 99.8 2E-19 4.3E-24 205.2 23.7 155 577-780 144-324 (411)
63 PF08022 FAD_binding_8: FAD-bi 99.8 2E-22 4.4E-27 186.1 -1.8 100 576-693 2-104 (105)
64 KOG0534 NADH-cytochrome b-5 re 99.8 2.4E-19 5.3E-24 190.4 21.0 222 574-876 50-278 (286)
65 PLN02252 nitrate reductase [NA 99.8 2.2E-19 4.9E-24 219.8 23.3 224 573-877 632-881 (888)
66 COG5126 FRQ1 Ca2+-binding prot 99.8 6.7E-19 1.5E-23 171.0 13.9 141 138-290 12-158 (160)
67 PRK12779 putative bifunctional 99.8 5.1E-18 1.1E-22 210.7 23.6 214 573-876 646-871 (944)
68 PRK12778 putative bifunctional 99.8 5.1E-18 1.1E-22 208.9 22.9 200 578-875 2-204 (752)
69 cd06193 siderophore_interactin 99.8 1.1E-17 2.3E-22 177.7 21.3 133 580-767 1-159 (235)
70 KOG0034 Ca2+/calmodulin-depend 99.8 4.1E-18 8.9E-23 171.4 13.0 148 139-291 26-178 (187)
71 PF08414 NADPH_Ox: Respiratory 99.8 6.5E-19 1.4E-23 153.7 5.8 99 118-216 1-100 (100)
72 PTZ00306 NADH-dependent fumara 99.7 5E-17 1.1E-21 207.4 23.4 223 574-876 913-1153(1167)
73 PRK12775 putative trifunctiona 99.7 1.9E-16 4.2E-21 198.3 23.2 201 578-876 2-205 (1006)
74 KOG0027 Calmodulin and related 99.7 3.6E-16 7.8E-21 154.4 12.5 137 141-288 3-149 (151)
75 KOG0044 Ca2+ sensor (EF-Hand s 99.6 5.9E-16 1.3E-20 155.8 11.5 149 140-291 23-178 (193)
76 PTZ00184 calmodulin; Provision 99.6 3E-14 6.6E-19 139.4 14.0 140 137-287 2-147 (149)
77 cd06206 bifunctional_CYPOR The 99.6 2.6E-14 5.7E-19 162.6 14.7 204 603-877 147-353 (384)
78 PTZ00183 centrin; Provisional 99.6 3.7E-14 8.1E-19 140.5 13.8 141 139-290 10-156 (158)
79 cd06207 CyPoR_like NADPH cytoc 99.5 6.8E-14 1.5E-18 159.1 16.4 191 618-877 161-355 (382)
80 cd06199 SiR Cytochrome p450- l 99.5 5.4E-14 1.2E-18 158.5 14.8 200 600-877 129-333 (360)
81 KOG0028 Ca2+-binding protein ( 99.5 1.1E-13 2.4E-18 131.2 12.0 139 140-289 27-171 (172)
82 TIGR01931 cysJ sulfite reducta 99.5 1.9E-13 4E-18 163.3 15.4 136 601-781 367-506 (597)
83 PF01794 Ferric_reduct: Ferric 99.4 2.7E-13 5.9E-18 129.1 8.0 120 381-533 4-124 (125)
84 KOG0038 Ca2+-binding kinase in 99.4 9.9E-13 2.2E-17 122.2 10.2 145 141-292 23-181 (189)
85 cd06203 methionine_synthase_re 99.4 6.9E-12 1.5E-16 143.2 18.9 135 618-795 171-315 (398)
86 PRK06214 sulfite reductase; Pr 99.4 1.2E-11 2.6E-16 144.3 18.5 137 617-794 312-450 (530)
87 cd06204 CYPOR NADPH cytochrome 99.4 1.7E-11 3.6E-16 140.8 19.0 194 618-876 175-388 (416)
88 COG2871 NqrF Na+-transporting 99.4 2E-11 4.2E-16 125.8 16.9 218 590-877 149-399 (410)
89 cd06202 Nitric_oxide_synthase 99.3 1.7E-11 3.6E-16 140.4 16.8 196 619-876 175-374 (406)
90 KOG0031 Myosin regulatory ligh 99.3 1.6E-11 3.5E-16 115.8 13.4 133 141-288 27-165 (171)
91 PF00175 NAD_binding_1: Oxidor 99.3 1.3E-11 2.8E-16 114.6 10.8 107 705-869 1-109 (109)
92 PRK10953 cysJ sulfite reductas 99.3 6E-11 1.3E-15 141.2 15.9 135 602-781 371-509 (600)
93 PF13499 EF-hand_7: EF-hand do 99.1 1.7E-10 3.7E-15 97.0 8.7 66 217-286 1-66 (66)
94 KOG0036 Predicted mitochondria 99.1 2.9E-10 6.4E-15 123.0 11.1 130 146-291 14-149 (463)
95 PF00970 FAD_binding_6: Oxidor 99.1 4E-10 8.7E-15 102.9 8.0 90 578-693 2-97 (99)
96 KOG3378 Globins and related he 99.0 6.9E-10 1.5E-14 113.8 7.7 129 573-724 147-286 (385)
97 KOG0037 Ca2+-binding protein, 99.0 3.3E-09 7.3E-14 106.6 12.4 126 146-288 57-188 (221)
98 KOG4223 Reticulocalbin, calume 99.0 1.4E-09 3E-14 115.3 8.8 133 144-284 161-301 (325)
99 KOG0030 Myosin essential light 99.0 4.6E-09 1E-13 97.8 10.8 135 143-287 8-150 (152)
100 PRK06567 putative bifunctional 99.0 5.4E-09 1.2E-13 127.4 14.5 111 577-714 792-907 (1028)
101 KOG0027 Calmodulin and related 98.9 2.1E-08 4.6E-13 99.0 12.8 107 178-290 9-115 (151)
102 cd05022 S-100A13 S-100A13: S-1 98.8 9.5E-09 2.1E-13 91.5 7.6 67 216-288 8-75 (89)
103 cd05026 S-100Z S-100Z: S-100Z 98.8 2.3E-08 5E-13 90.2 8.2 70 216-288 10-81 (93)
104 cd05027 S-100B S-100B: S-100B 98.7 4E-08 8.7E-13 87.5 8.2 67 216-288 8-79 (88)
105 PTZ00183 centrin; Provisional 98.7 1.9E-07 4E-12 92.4 13.5 101 179-289 19-119 (158)
106 PTZ00184 calmodulin; Provision 98.6 2.8E-07 6.1E-12 89.9 12.7 101 179-289 13-113 (149)
107 COG5126 FRQ1 Ca2+-binding prot 98.6 4.2E-07 9.1E-12 89.0 12.5 108 175-290 15-122 (160)
108 PLN02964 phosphatidylserine de 98.6 1.3E-07 2.9E-12 111.8 10.3 101 140-244 137-243 (644)
109 cd05031 S-100A10_like S-100A10 98.6 1.8E-07 3.8E-12 84.7 8.1 68 215-288 7-79 (94)
110 KOG0377 Protein serine/threoni 98.6 2.5E-07 5.5E-12 100.6 10.0 157 117-289 442-616 (631)
111 cd05025 S-100A1 S-100A1: S-100 98.5 2.3E-07 4.9E-12 83.6 8.0 71 215-288 8-80 (92)
112 KOG0028 Ca2+-binding protein ( 98.5 8.1E-07 1.8E-11 85.1 12.0 102 179-290 35-136 (172)
113 KOG1158 NADP/FAD dependent oxi 98.5 4.7E-07 1E-11 106.7 12.4 204 605-877 409-618 (645)
114 smart00027 EH Eps15 homology d 98.5 2.1E-07 4.5E-12 84.6 7.3 85 215-314 9-93 (96)
115 KOG4223 Reticulocalbin, calume 98.5 2.8E-07 6.2E-12 97.9 9.1 141 143-290 74-230 (325)
116 cd05023 S-100A11 S-100A11: S-1 98.5 3.6E-07 7.9E-12 81.6 8.4 70 216-288 9-80 (89)
117 cd00252 SPARC_EC SPARC_EC; ext 98.5 3.3E-07 7.1E-12 85.8 7.3 64 214-290 46-109 (116)
118 cd00052 EH Eps15 homology doma 98.5 3.9E-07 8.4E-12 76.5 6.9 60 219-288 2-61 (67)
119 cd05029 S-100A6 S-100A6: S-100 98.4 6.4E-07 1.4E-11 79.8 8.1 66 217-288 11-79 (88)
120 COG0369 CysJ Sulfite reductase 98.4 2.7E-06 5.8E-11 100.5 14.9 185 619-877 371-560 (587)
121 PLN02964 phosphatidylserine de 98.4 2.3E-06 4.9E-11 101.5 13.4 121 158-290 118-245 (644)
122 cd00213 S-100 S-100: S-100 dom 98.4 1.1E-06 2.4E-11 78.3 7.6 71 215-288 7-79 (88)
123 KOG0044 Ca2+ sensor (EF-Hand s 98.3 4.1E-06 8.9E-11 85.0 10.3 104 175-288 24-128 (193)
124 KOG4666 Predicted phosphate ac 98.3 1.4E-06 3E-11 91.9 7.0 138 143-293 220-364 (412)
125 PF13499 EF-hand_7: EF-hand do 98.2 2.4E-06 5.2E-11 71.7 5.8 61 179-242 2-66 (66)
126 KOG2562 Protein phosphatase 2 98.2 3E-06 6.5E-11 93.8 7.7 133 147-284 279-420 (493)
127 PF13833 EF-hand_8: EF-hand do 98.2 4.2E-06 9.1E-11 67.3 6.5 53 229-288 1-53 (54)
128 cd00051 EFh EF-hand, calcium b 98.2 4.8E-06 1E-10 67.6 6.7 61 218-286 2-62 (63)
129 KOG0037 Ca2+-binding protein, 98.1 9E-06 2E-10 82.2 7.9 123 143-286 94-218 (221)
130 cd05030 calgranulins Calgranul 98.0 2.6E-05 5.7E-10 69.6 7.9 69 217-288 9-79 (88)
131 PF13833 EF-hand_8: EF-hand do 97.9 2.2E-05 4.8E-10 63.1 6.4 50 194-243 2-52 (54)
132 KOG2643 Ca2+ binding protein, 97.9 4.7E-05 1E-09 83.9 10.7 127 149-287 236-383 (489)
133 PF00036 EF-hand_1: EF hand; 97.9 1.3E-05 2.9E-10 55.6 4.2 27 217-243 1-27 (29)
134 PF14658 EF-hand_9: EF-hand do 97.9 2.3E-05 5E-10 64.9 6.2 62 220-288 2-64 (66)
135 PRK05419 putative sulfite oxid 97.9 5.7E-05 1.2E-09 78.1 9.1 127 411-571 68-194 (205)
136 KOG0036 Predicted mitochondria 97.8 6E-05 1.3E-09 82.6 9.5 148 128-289 35-184 (463)
137 KOG1159 NADP-dependent flavopr 97.8 2.9E-05 6.4E-10 86.7 7.0 128 607-778 357-484 (574)
138 KOG0751 Mitochondrial aspartat 97.8 0.00011 2.5E-09 81.5 10.8 140 146-289 33-208 (694)
139 PF00036 EF-hand_1: EF hand; 97.8 2.4E-05 5.3E-10 54.3 3.3 27 262-288 2-28 (29)
140 PRK12309 transaldolase/EF-hand 97.7 0.00012 2.6E-09 82.8 8.7 70 198-288 314-385 (391)
141 cd05026 S-100Z S-100Z: S-100Z 97.7 0.00018 3.8E-09 65.0 8.0 65 179-245 12-82 (93)
142 KOG0041 Predicted Ca2+-binding 97.6 0.00017 3.8E-09 71.6 7.8 66 216-290 99-165 (244)
143 cd05027 S-100B S-100B: S-100B 97.6 0.00022 4.8E-09 63.6 7.8 64 179-244 10-79 (88)
144 KOG0034 Ca2+/calmodulin-depend 97.6 0.00015 3.2E-09 73.7 7.4 93 147-243 70-174 (187)
145 cd00051 EFh EF-hand, calcium b 97.6 0.00024 5.2E-09 57.3 7.2 60 180-242 3-62 (63)
146 cd05024 S-100A10 S-100A10: A s 97.6 0.00017 3.8E-09 64.0 6.5 68 217-288 9-76 (91)
147 cd05022 S-100A13 S-100A13: S-1 97.6 0.00028 6E-09 63.0 7.8 65 179-245 10-76 (89)
148 COG2717 Predicted membrane pro 97.6 0.00062 1.3E-08 69.5 11.1 124 414-571 71-194 (209)
149 PF13405 EF-hand_6: EF-hand do 97.5 0.00011 2.5E-09 51.8 4.1 27 217-243 1-27 (31)
150 PF13202 EF-hand_5: EF hand; P 97.5 0.00014 3.1E-09 48.6 3.8 25 218-242 1-25 (25)
151 cd05025 S-100A1 S-100A1: S-100 97.5 0.00039 8.4E-09 62.6 8.0 66 177-244 9-80 (92)
152 KOG2643 Ca2+ binding protein, 97.5 0.00019 4E-09 79.3 6.3 127 148-289 320-454 (489)
153 cd05031 S-100A10_like S-100A10 97.4 0.00063 1.4E-08 61.5 7.8 64 179-243 10-78 (94)
154 KOG0030 Myosin essential light 97.3 0.0015 3.3E-08 61.6 9.6 108 175-290 9-118 (152)
155 cd00052 EH Eps15 homology doma 97.3 0.00054 1.2E-08 57.2 6.2 59 180-243 2-60 (67)
156 smart00027 EH Eps15 homology d 97.3 0.0013 2.8E-08 59.7 8.6 61 179-244 12-72 (96)
157 cd00252 SPARC_EC SPARC_EC; ext 97.3 0.001 2.2E-08 62.4 8.0 59 177-242 48-106 (116)
158 cd05029 S-100A6 S-100A6: S-100 97.3 0.00089 1.9E-08 59.7 7.2 64 180-244 13-79 (88)
159 KOG4065 Uncharacterized conser 97.2 0.00088 1.9E-08 60.8 6.5 72 213-285 64-142 (144)
160 cd05023 S-100A11 S-100A11: S-1 97.2 0.0019 4.1E-08 57.7 8.3 64 180-244 12-80 (89)
161 PF13202 EF-hand_5: EF hand; P 97.0 0.00063 1.4E-08 45.5 3.0 23 264-286 3-25 (25)
162 KOG0040 Ca2+-binding actin-bun 97.0 0.0031 6.6E-08 78.2 10.1 132 141-287 2248-2397(2399)
163 cd05030 calgranulins Calgranul 96.9 0.0031 6.6E-08 56.3 7.4 65 179-244 10-79 (88)
164 KOG0031 Myosin regulatory ligh 96.9 0.015 3.3E-07 55.9 12.3 97 180-290 35-131 (171)
165 cd00213 S-100 S-100: S-100 dom 96.9 0.0039 8.5E-08 55.4 7.9 65 178-244 9-79 (88)
166 PF12763 EF-hand_4: Cytoskelet 96.8 0.0049 1.1E-07 56.7 7.6 92 213-318 7-98 (104)
167 PF10591 SPARC_Ca_bdg: Secrete 96.7 0.003 6.5E-08 59.1 5.6 73 202-284 40-112 (113)
168 PF14788 EF-hand_10: EF hand; 96.7 0.0062 1.3E-07 47.8 6.3 48 196-243 1-48 (51)
169 KOG4251 Calcium binding protei 96.5 0.003 6.6E-08 64.6 4.7 70 215-289 100-169 (362)
170 KOG4251 Calcium binding protei 96.5 0.0023 5E-08 65.5 3.5 131 146-286 101-262 (362)
171 PF14788 EF-hand_10: EF hand; 96.4 0.0096 2.1E-07 46.8 5.7 48 232-287 1-48 (51)
172 cd05024 S-100A10 S-100A10: A s 96.2 0.0089 1.9E-07 53.2 5.3 30 214-243 46-75 (91)
173 PF13405 EF-hand_6: EF-hand do 96.2 0.0057 1.2E-07 43.1 3.2 26 263-288 3-28 (31)
174 PF12763 EF-hand_4: Cytoskelet 96.1 0.011 2.3E-07 54.4 5.7 48 195-244 24-71 (104)
175 COG2375 ViuB Siderophore-inter 96.1 1.6 3.6E-05 46.7 22.5 125 574-722 16-165 (265)
176 PF14658 EF-hand_9: EF-hand do 95.9 0.023 4.9E-07 47.3 6.0 59 182-243 3-63 (66)
177 PRK12309 transaldolase/EF-hand 95.9 0.011 2.5E-07 67.0 5.8 57 171-243 328-384 (391)
178 KOG0046 Ca2+-binding actin-bun 95.8 0.024 5.3E-07 64.3 7.7 67 217-289 20-86 (627)
179 KOG0377 Protein serine/threoni 95.6 0.025 5.3E-07 62.8 6.9 65 177-244 547-615 (631)
180 KOG0040 Ca2+-binding actin-bun 95.2 0.031 6.7E-07 69.8 6.2 73 218-292 2255-2328(2399)
181 KOG0039 Ferric reductase, NADH 95.1 0.24 5.2E-06 60.4 13.6 80 157-243 1-88 (646)
182 KOG3866 DNA-binding protein of 94.9 0.038 8.2E-07 58.6 5.4 90 198-287 225-323 (442)
183 smart00054 EFh EF-hand, calciu 94.5 0.045 9.7E-07 36.3 3.2 26 218-243 2-27 (29)
184 smart00054 EFh EF-hand, calciu 94.4 0.051 1.1E-06 36.0 3.3 26 263-288 3-28 (29)
185 KOG0038 Ca2+-binding kinase in 94.2 0.061 1.3E-06 51.2 4.4 93 147-243 75-176 (189)
186 KOG0751 Mitochondrial aspartat 93.8 0.14 3E-06 57.8 7.0 86 148-243 110-206 (694)
187 KOG0041 Predicted Ca2+-binding 92.9 0.53 1.1E-05 47.5 8.8 95 180-283 102-198 (244)
188 KOG0169 Phosphoinositide-speci 92.2 1.1 2.3E-05 54.0 11.6 151 126-289 111-275 (746)
189 KOG1029 Endocytic adaptor prot 92.2 0.81 1.7E-05 54.4 10.3 134 141-287 11-256 (1118)
190 KOG0046 Ca2+-binding actin-bun 92.1 0.22 4.8E-06 56.8 5.5 76 134-209 7-86 (627)
191 KOG2562 Protein phosphatase 2 91.2 0.35 7.6E-06 54.7 5.8 129 147-286 226-377 (493)
192 PF09279 EF-hand_like: Phospho 90.9 0.44 9.6E-06 41.7 5.2 67 217-290 1-71 (83)
193 KOG0035 Ca2+-binding actin-bun 90.4 1.4 3E-05 54.3 10.3 102 138-240 739-848 (890)
194 KOG4347 GTPase-activating prot 90.3 0.5 1.1E-05 55.6 6.3 102 133-238 489-612 (671)
195 PF10591 SPARC_Ca_bdg: Secrete 89.7 0.17 3.7E-06 47.3 1.6 29 143-171 51-81 (113)
196 PF08021 FAD_binding_9: Sidero 89.4 2.2 4.9E-05 40.1 8.9 90 579-693 1-117 (117)
197 KOG4578 Uncharacterized conser 88.2 0.37 8E-06 51.9 3.0 69 217-292 334-402 (421)
198 PLN02952 phosphoinositide phos 85.1 4.1 8.9E-05 48.9 9.8 91 195-288 15-110 (599)
199 PF09069 EF-hand_3: EF-hand; 84.0 7 0.00015 35.0 8.4 71 215-290 2-77 (90)
200 KOG4065 Uncharacterized conser 82.4 1.3 2.9E-05 40.7 3.3 64 140-205 63-142 (144)
201 KOG1707 Predicted Ras related/ 80.6 5.4 0.00012 47.0 8.1 149 141-291 190-346 (625)
202 KOG3555 Ca2+-binding proteogly 79.8 2.1 4.5E-05 46.7 4.1 63 215-289 249-311 (434)
203 KOG4666 Predicted phosphate ac 79.4 1.9 4.1E-05 46.8 3.7 84 194-289 241-325 (412)
204 PF09279 EF-hand_like: Phospho 78.8 4.1 9E-05 35.5 5.2 62 179-244 2-69 (83)
205 KOG0169 Phosphoinositide-speci 77.2 14 0.0003 44.9 10.3 98 180-289 136-233 (746)
206 KOG0998 Synaptic vesicle prote 77.1 1.9 4.1E-05 54.2 3.4 137 141-290 124-347 (847)
207 KOG4403 Cell surface glycoprot 71.9 34 0.00074 38.7 10.9 61 179-246 70-131 (575)
208 PF09068 EF-hand_2: EF hand; 71.5 20 0.00043 34.3 8.1 91 133-243 26-124 (127)
209 KOG0035 Ca2+-binding actin-bun 68.6 9.3 0.0002 47.4 6.3 73 215-290 746-818 (890)
210 KOG4578 Uncharacterized conser 68.2 3.5 7.7E-05 44.7 2.4 51 193-243 346-397 (421)
211 KOG0042 Glycerol-3-phosphate d 63.3 7.9 0.00017 45.3 4.1 66 217-290 594-659 (680)
212 PF05517 p25-alpha: p25-alpha 60.9 75 0.0016 31.4 10.1 66 180-245 2-70 (154)
213 KOG2243 Ca2+ release channel ( 59.5 13 0.00029 47.0 5.2 59 221-288 4062-4120(5019)
214 PF05042 Caleosin: Caleosin re 53.5 39 0.00084 33.9 6.5 24 217-240 8-31 (174)
215 KOG1955 Ral-GTPase effector RA 51.4 19 0.0004 41.4 4.4 61 218-288 233-293 (737)
216 PF08726 EFhand_Ca_insen: Ca2+ 50.3 16 0.00034 31.0 2.9 59 213-284 3-65 (69)
217 KOG3555 Ca2+-binding proteogly 49.8 24 0.00052 38.8 4.8 90 147-243 212-309 (434)
218 PF05042 Caleosin: Caleosin re 48.8 53 0.0011 33.0 6.7 69 215-286 95-164 (174)
219 KOG4347 GTPase-activating prot 47.4 29 0.00063 41.5 5.3 59 215-282 554-612 (671)
220 PF09068 EF-hand_2: EF hand; 45.5 2.6E+02 0.0055 26.8 10.6 103 180-287 3-124 (127)
221 PF05517 p25-alpha: p25-alpha 44.6 73 0.0016 31.5 7.1 65 218-288 1-69 (154)
222 PF14145 YrhK: YrhK-like prote 42.6 57 0.0012 26.8 4.9 52 520-572 5-56 (59)
223 PF01794 Ferric_reduct: Ferric 39.8 60 0.0013 30.0 5.5 51 481-540 2-55 (125)
224 KOG1264 Phospholipase C [Lipid 38.4 1.7E+02 0.0037 36.1 9.8 160 123-289 116-294 (1267)
225 KOG4004 Matricellular protein 38.4 12 0.00026 37.9 0.5 55 222-286 193-248 (259)
226 PF09842 DUF2069: Predicted me 37.8 3.4E+02 0.0073 25.2 10.1 52 418-502 54-105 (109)
227 PF08414 NADPH_Ox: Respiratory 36.7 1.3E+02 0.0029 27.4 6.6 65 216-290 30-94 (100)
228 KOG2871 Uncharacterized conser 35.6 27 0.00059 38.9 2.6 66 214-286 307-372 (449)
229 KOG1029 Endocytic adaptor prot 33.1 51 0.0011 40.1 4.4 58 146-206 195-255 (1118)
230 PLN02631 ferric-chelate reduct 32.4 65 0.0014 39.8 5.4 55 829-889 642-697 (699)
231 PF00033 Cytochrom_B_N: Cytoch 32.1 1.1E+02 0.0023 30.6 6.2 28 414-441 44-71 (188)
232 MTH00156 CYTB cytochrome b; Pr 31.9 8.1E+02 0.017 27.8 13.8 38 397-435 150-187 (356)
233 PLN02292 ferric-chelate reduct 31.4 69 0.0015 39.7 5.4 54 829-889 646-700 (702)
234 KOG1265 Phospholipase C [Lipid 30.7 2.3E+02 0.0051 35.4 9.3 126 157-288 161-299 (1189)
235 COG5522 Predicted integral mem 28.9 76 0.0016 32.7 4.2 25 516-540 126-150 (236)
236 MTH00191 CYTB cytochrome b; Pr 28.7 5.2E+02 0.011 29.5 11.5 29 473-502 278-307 (365)
237 KOG0042 Glycerol-3-phosphate d 28.5 34 0.00074 40.3 2.0 49 195-243 608-656 (680)
238 cd07313 terB_like_2 tellurium 28.2 1.5E+02 0.0033 26.6 6.0 81 157-242 12-98 (104)
239 PF13301 DUF4079: Protein of u 27.8 2.6E+02 0.0055 28.4 7.9 88 415-538 78-166 (175)
240 TIGR01848 PHA_reg_PhaR polyhyd 26.0 1.6E+02 0.0035 27.2 5.4 68 223-290 10-79 (107)
241 MTH00074 CYTB cytochrome b; Pr 25.7 8.1E+02 0.017 28.1 12.4 30 473-502 282-311 (380)
242 cd07316 terB_like_DjlA N-termi 25.0 2.3E+02 0.0049 25.4 6.5 59 178-241 37-98 (106)
243 PF04876 Tenui_NCP: Tenuivirus 24.9 1.6E+02 0.0035 28.7 5.4 34 256-292 131-164 (175)
244 PLN02222 phosphoinositide phos 24.9 1.8E+02 0.0038 35.3 7.1 65 216-288 25-90 (581)
245 PF14358 DUF4405: Domain of un 24.8 65 0.0014 26.6 2.6 25 414-438 39-63 (64)
246 cd07313 terB_like_2 tellurium 24.5 83 0.0018 28.4 3.5 54 229-288 12-65 (104)
247 COG4097 Predicted ferric reduc 23.9 1.9E+02 0.0042 32.8 6.6 66 468-541 32-98 (438)
248 PF12174 RST: RCD1-SRO-TAF4 (R 23.8 1.3E+02 0.0029 25.5 4.3 49 194-245 6-54 (70)
249 MTH00131 CYTB cytochrome b; Pr 23.0 7.4E+02 0.016 28.4 11.4 29 473-502 281-310 (380)
250 PF09874 DUF2101: Predicted me 22.9 3.6E+02 0.0078 27.9 7.8 39 571-609 136-175 (206)
251 MTH00053 CYTB cytochrome b; Pr 22.3 7.9E+02 0.017 28.2 11.4 29 473-502 282-311 (381)
252 PLN00151 potassium transporter 22.1 5.2E+02 0.011 32.6 10.3 20 340-359 303-322 (852)
253 PF01292 Ni_hydr_CYTB: Prokary 21.9 4.6E+02 0.01 25.9 8.7 22 417-438 43-64 (182)
254 PRK10639 formate dehydrogenase 21.8 3.7E+02 0.008 27.9 8.2 24 516-539 146-170 (211)
255 MTH00086 CYTB cytochrome b; Pr 21.7 1.2E+03 0.025 26.5 12.5 28 473-501 269-297 (355)
256 KOG2557 Uncharacterized conser 21.5 98 0.0021 34.7 3.7 64 178-243 58-121 (427)
257 PLN02952 phosphoinositide phos 21.5 2.2E+02 0.0047 34.7 6.9 83 157-243 13-109 (599)
258 MTH00100 CYTB cytochrome b; Pr 21.5 5E+02 0.011 29.7 9.7 29 473-502 281-310 (379)
259 PLN02844 oxidoreductase/ferric 21.2 1.4E+02 0.003 37.2 5.4 55 476-539 155-212 (722)
260 PF03904 DUF334: Domain of unk 21.1 2.5E+02 0.0054 29.5 6.3 10 557-566 214-223 (230)
261 MTH00022 CYTB cytochrome b; Va 21.0 7.4E+02 0.016 28.4 10.9 29 473-502 280-309 (379)
262 PLN02228 Phosphoinositide phos 20.8 2.3E+02 0.005 34.2 7.0 68 214-289 22-93 (567)
263 TIGR02787 codY_Gpos GTP-sensin 20.6 2.1E+02 0.0046 30.5 5.8 36 139-174 176-212 (251)
264 MTH00016 CYTB cytochrome b; Va 20.5 7.8E+02 0.017 28.2 10.9 29 473-502 282-311 (378)
265 PF07879 PHB_acc_N: PHB/PHA ac 20.2 1.5E+02 0.0032 24.8 3.6 22 223-244 10-31 (64)
No 1
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-101 Score=915.72 Aligned_cols=644 Identities=55% Similarity=0.974 Sum_probs=572.2
Q ss_pred CCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCC
Q 002711 194 SSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHN 273 (889)
Q Consensus 194 ~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~ 273 (889)
+| |+++||. +.+.+.|++++.+|+|+|+ +||.++.+|+.++++.+...+.+..++++.+++.+.++++.|.++
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDH 74 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccc
Confidence 37 9999999 6788999999999999999 999999999999999877776688889999999999999999999
Q ss_pred CCcccHHHHHHHHHhCCCcccccccchhhhhhhhhhccCCCCCCCcccccccccccccccccceeehhHHHHHHHHHHHH
Q 002711 274 LGYIELYNLEMLLLQAPSQSANLLTDSRVLSQMLSQRLVPTKDRNPIKKCCRGLSYFVQDNWKRIWVMLLWLSICAGLFT 353 (889)
Q Consensus 274 dG~Is~~EF~~~l~~~p~~~~~~~~~~~~l~~~~s~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~v~lf~ 353 (889)
.|++.++++..++.+.|.+.....+...+++.++.+.+.|.+ ..+..+++.....+++++|.++|.+++|+.+++++|.
T Consensus 75 ~~y~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~ 153 (646)
T KOG0039|consen 75 KGYITNEDLEILLLQIPTLLFAILLSFANLSLLLSQPLKPTR-RKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFT 153 (646)
T ss_pred cceeeecchhHHHHhchHHHHHHHHHHHHHHhhhcccccccc-ccccchheeeeeeeeccceEeeeeehHHHHHHHHHHH
Confidence 999999999999999997642211111145566777777655 4456677778888999999999999999999999999
Q ss_pred HHHHhccccchhhhcceeeeeecchhhhHHHHHHHHHHHhhhhhhhhccccccCCceecCCcchhHHHHHHHHHHHHhhh
Q 002711 354 WKFIQYKHRAVFHVMGYCVTTAKGAAETLKFNMALILLPVCRNTITWLRSRTKLGQVVPFDDNINFHKVIAVGIAIGVGL 433 (889)
Q Consensus 354 ~~~~~y~~~~~~~~~g~~~~~a~~~a~~l~~n~~lill~~~Rn~l~~Lr~~t~l~~~~~~d~~~~fHr~ig~~~~~~~~l 433 (889)
|++.+|....+++++|+++++++++|.++++||+++++++|||.++||+..+.+..++|+|+++.||+.+|..+...+.+
T Consensus 154 ~~~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~ 233 (646)
T KOG0039|consen 154 WRFLQYVYLGTRHILGLCLALARGSAETLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILL 233 (646)
T ss_pred HHHHHHHhhhhhhhhhheeeeeccccccchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHH
Confidence 99999988778899999999999999999999999999999999999996588889999999999999999999999999
Q ss_pred hhhhhhhcccccccccCccccc-CccCccCCCCCCcccccccccchhHHHHHHHHHHHHHHhhhhhHhhccCCchhhhhc
Q 002711 434 HAGAHLTCDFPRLLHATDEEYE-PMKPFFGDDRPDDYWWFVKGTEGWTGVVMVVLMAISYTLAQPWFRRNRLNLPKILKK 512 (889)
Q Consensus 434 H~~~~l~~~f~~~~~~~~~~~~-~l~~~~~~~~~~~yw~~~~~~~g~tG~i~lv~~~i~~~~s~~~~Rr~~~~~~~~~~~ 512 (889)
|.++|.+|.|+.++|.....+. ....+++ ++.|++++.++.++||++++++|++|+++|+++|||+
T Consensus 234 H~w~~~~~~~~~~ih~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~---------- 300 (646)
T KOG0039|consen 234 HIWLHLVNFFPFLVHGLEYTISLASELFFL---PKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRR---------- 300 (646)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhccc---chhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHH----------
Confidence 9999999988888876543221 1222232 5578888999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhhhccccccceehhhhhhhhhhHhHHHHHHHHhhccccEEEEEEEEecCCEEE
Q 002711 513 LTGFNAFWYSHHLFVIVYVLFIIHGYFLYLSKKWYKRTTWMYLAVPVLLYACERLIRAFRSGYKSVRILKVAVYPGNVLA 592 (889)
Q Consensus 513 ~~~ye~F~~~H~l~~i~~vll~~H~~~~~l~~~w~~~~~w~y~~~~~~l~~~drl~R~~r~~~~~~~i~~v~~~~~~v~~ 592 (889)
.||+|||+|||++++|+++++||...++. .+|+|+++|+++|++||++|..|+ ..+++++++..+|+++++
T Consensus 301 --~~e~F~ytH~l~~v~~illi~hg~~~~~~------~~w~~~~~p~~ly~~dR~~r~~r~-~~~~~i~~~~llp~~vi~ 371 (646)
T KOG0039|consen 301 --FYEAFWYTHHLYIVFYILLIIHGGFRLLG------TTWMYIAVPVLLYILDRILRFLRS-QKNVKIAKVVLLPSDVLE 371 (646)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcccccc------cchhHHHHHHHHHHHHHHHHHHHH-hcCceEEEEEEcCCCeEE
Confidence 79999999999999999999999876542 689999999999999999999999 578999999999999999
Q ss_pred EEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCCCCceEEEEEecCcchHHHHHHHhhccCCCCCCCcccccccc
Q 002711 593 LQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADI 672 (889)
Q Consensus 593 l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~ 672 (889)
|++++|++|+|+||||+||+||++++||||||||+|+|+|+++++|||+.||||++|++.+++.|+++..+.+
T Consensus 372 L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsvhIk~~g~wT~~L~~~~~~~~~~~~~~~~------- 444 (646)
T KOG0039|consen 372 LIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSVHIKALGDWTEKLRNAFSEVSQPPESDKS------- 444 (646)
T ss_pred EEEeCCCCCCCCCCCEEEEECccccccccCCceeecCCCCCEEEEEEEecCcHHHHHHHHHhhhccccccccc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999765544322111
Q ss_pred ccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCc
Q 002711 673 GQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFA 752 (889)
Q Consensus 673 ~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (889)
...+++.||||||++++++.+||+++|||||+|+||++|++++++++.+..+...+ .+.......
T Consensus 445 ------~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~---------~~~~~~~~~ 509 (646)
T KOG0039|consen 445 ------YPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAP---------TSDYSDSLK 509 (646)
T ss_pred ------ccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCc---------cccccccce
Confidence 23679999999999999999999999999999999999999999998665321000 112233456
Q ss_pred cceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCcccccc
Q 002711 753 TKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHF 832 (889)
Q Consensus 753 ~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~ 832 (889)
+++++|+|++|++.+++||.+++.++.+.+..+.+++|+|+|+.++++|++++++.|.|.+.|++++.|+++|++..+|+
T Consensus 510 ~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~ 589 (646)
T KOG0039|consen 510 LKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHF 589 (646)
T ss_pred ecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeC
Confidence 88999999999999999999999999998887889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 833 ARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 833 GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
|||||++++++++..|++.+++||+||||+|.+++|+.|.+.+.++.+.|+||+|+|
T Consensus 590 gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~~~~~~~~f~~E~F 646 (646)
T KOG0039|consen 590 GRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSSSTATRFEFHKENF 646 (646)
T ss_pred CCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcccccCceeeeeeccC
Confidence 999999999999999988789999999999999999999999988889999999998
No 2
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=8.3e-59 Score=545.80 Aligned_cols=367 Identities=23% Similarity=0.409 Sum_probs=288.7
Q ss_pred hhHHHHHHHHHHHHHHHHhccccchhh-----------hcceeeeeecchhhhHHHHHHHHHHHhhhh-hhhhccccccC
Q 002711 340 VMLLWLSICAGLFTWKFIQYKHRAVFH-----------VMGYCVTTAKGAAETLKFNMALILLPVCRN-TITWLRSRTKL 407 (889)
Q Consensus 340 ~~~l~~~~~v~lf~~~~~~y~~~~~~~-----------~~g~~~~~a~~~a~~l~~n~~lill~~~Rn-~l~~Lr~~t~l 407 (889)
+-++++++.+++++|.+..|-.... . .......+|.++|.....|+++++||+.|| .++||+|
T Consensus 108 ~e~~~~~~f~~~~~w~~~~y~~~~~-~~~~~~~~~~~~~~~~l~~ig~RtGila~~~lpll~L~a~Rnn~L~~ltG---- 182 (699)
T PLN02631 108 TELTFSLLFVALLAWSLYNYLYLSY-HVHLHNDDNAKIWQAKFRAFGLRIGYVGHICWAFLFFPVTRASTILPLVG---- 182 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-eeccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHC----
Confidence 4457778888888887776643221 1 012345678899999999999999999997 5899999
Q ss_pred CceecCCcchhHHHHHHHHHHHHhhhhhhhhhhcccccccccCcccccCccCccCCCCCCcccccccccchhHHHHHHHH
Q 002711 408 GQVVPFDDNINFHKVIAVGIAIGVGLHAGAHLTCDFPRLLHATDEEYEPMKPFFGDDRPDDYWWFVKGTEGWTGVVMVVL 487 (889)
Q Consensus 408 ~~~~~~d~~~~fHr~ig~~~~~~~~lH~~~~l~~~f~~~~~~~~~~~~~l~~~~~~~~~~~yw~~~~~~~g~tG~i~lv~ 487 (889)
|+|++++.||||+|+++++++++|+++++.. +.. .+.+. ..+. ....|| .+++|++++++
T Consensus 183 ---~s~e~~i~yHRWlGri~~~la~iH~i~y~i~-~~~-----~~~~~---~~~~--w~~~~~------~~~~GviA~v~ 242 (699)
T PLN02631 183 ---LTSESSIKYHIWLGHVSNFLFLVHTVVFLIY-WAM-----INKLM---ETFA--WNPTYV------PNLAGTIAMVI 242 (699)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-----hchhh---hhhh--cccccc------hHHHHHHHHHH
Confidence 9999999999999999999999999999865 211 11111 0010 001122 35789999999
Q ss_pred HHHHHHhhhhhHhhccCCchhhhhccccchhHHHHHHHHHHHHHHHHHHhhhhhhccccccceehhh-hhhhhhhHhHHH
Q 002711 488 MAISYTLAQPWFRRNRLNLPKILKKLTGFNAFWYSHHLFVIVYVLFIIHGYFLYLSKKWYKRTTWMY-LAVPVLLYACER 566 (889)
Q Consensus 488 ~~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~l~~~w~~~~~w~y-~~~~~~l~~~dr 566 (889)
+++|+++|+++|||+ +||+|+++|++++++++++++|.. ..|.| +++++++|++||
T Consensus 243 ~~lm~~~Sl~~~RRr------------~YE~F~~~Hillaifiv~~~~H~g-----------~~w~~~~~~~ialw~~DR 299 (699)
T PLN02631 243 GIAMWVTSLPSFRRK------------KFELFFYTHHLYGLYIVFYVIHVG-----------DSWFCMILPNIFLFFIDR 299 (699)
T ss_pred HHHHHHhccHHHHhh------------hhhHHHHHHHHHHHHHHheEEecC-----------CchHHHHHHHHHHHHHHH
Confidence 999999999999998 799999999999987777788852 12433 456688999999
Q ss_pred HHHHHhhccccEEEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCC--CCceEEEEEecCc
Q 002711 567 LIRAFRSGYKSVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPG--DDYLSIHIRTLGD 644 (889)
Q Consensus 567 l~R~~r~~~~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~--~~~l~l~Ir~~G~ 644 (889)
++|.+|+.. ..++++++.+|++++++++++|++++|+||||++|++|..+.+|||||||+|+|+ ++.++++||..|+
T Consensus 300 ~lR~~r~~~-~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg 378 (699)
T PLN02631 300 YLRFLQSTK-RSRLVSARILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGS 378 (699)
T ss_pred HHHHHHHhc-eEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCCh
Confidence 999999874 4788889999999999999998889999999999999999999999999999984 5789999999999
Q ss_pred chHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHH
Q 002711 645 WTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLN 724 (889)
Q Consensus 645 wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~ 724 (889)
||++|++.+.. .++ ..+|.||||||.+..+..+++.+|+||||+||||++|++++++.
T Consensus 379 ~T~~L~~~l~~------------------~g~----~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~ 436 (699)
T PLN02631 379 WTQKLYTHLSS------------------SID----SLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIF 436 (699)
T ss_pred HHHHHHHhhhc------------------CCC----eeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHh
Confidence 99999987631 111 24799999999876666788999999999999999999999986
Q ss_pred HHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhh---cCCCcEEEEEeeecccc
Q 002711 725 NIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEY---DQDGVIELHNYCTSVYE 798 (889)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~---~~~~~i~l~~y~T~~~~ 798 (889)
+..+. ..+.++++|+|++|+.+++. |.+++..++.. ..+.++++++|+|+..+
T Consensus 437 ~~~~~--------------------~~~~~~V~Li~~vR~~~dL~-f~deL~~l~~~~~~l~~~ni~i~iyVTR~~~ 492 (699)
T PLN02631 437 QSQNP--------------------STKLPDVLLVCSFKHYHDLA-FLDLIFPLDISVSDISRLNLRIEAYITREDK 492 (699)
T ss_pred ccccc--------------------ccCCCcEEEEEEECCHHHhh-hHHHHhhhccchhhhhcCceEEEEEEcCCCC
Confidence 53211 01245899999999999986 77777653211 11358999999998543
No 3
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=2.2e-58 Score=543.46 Aligned_cols=340 Identities=21% Similarity=0.394 Sum_probs=272.6
Q ss_pred eeeecchhhhHHHHHHHHHHHhhhh-hhhhccccccCCceecCCcchhHHHHHHHHHHHHhhhhhhhhhhcccccccccC
Q 002711 372 VTTAKGAAETLKFNMALILLPVCRN-TITWLRSRTKLGQVVPFDDNINFHKVIAVGIAIGVGLHAGAHLTCDFPRLLHAT 450 (889)
Q Consensus 372 ~~~a~~~a~~l~~n~~lill~~~Rn-~l~~Lr~~t~l~~~~~~d~~~~fHr~ig~~~~~~~~lH~~~~l~~~f~~~~~~~ 450 (889)
..+|.++|....++|+++++|+.|| .+.||+| |||++++.||||+|+++++++++|+++|++. +. .
T Consensus 167 ~~vg~R~Gila~~~lpll~l~~~Rnn~L~~ltG-------~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~-~~-----~ 233 (702)
T PLN02292 167 DSIAVRLGLVGNICLAFLFYPVARGSSLLAAVG-------LTSESSIKYHIWLGHLVMTLFTSHGLCYIIY-WI-----S 233 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----h
Confidence 4578889999999999999999997 5899999 9999999999999999999999999999875 21 1
Q ss_pred cccccCccCccCCCCCCcccccccccchhHHHHHHHHHHHHHHhhhhhHhhccCCchhhhhccccchhHHHHHHHHHHHH
Q 002711 451 DEEYEPMKPFFGDDRPDDYWWFVKGTEGWTGVVMVVLMAISYTLAQPWFRRNRLNLPKILKKLTGFNAFWYSHHLFVIVY 530 (889)
Q Consensus 451 ~~~~~~l~~~~~~~~~~~yw~~~~~~~g~tG~i~lv~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~ 530 (889)
.+.+..+ ..|+ ..+..+++|+++++++.+|+++|+++|||+ +||+|+++|+++++++
T Consensus 234 ~~~~~~~----------~~w~-~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~------------~YE~F~~~HiL~~v~~ 290 (702)
T PLN02292 234 MNQVSQM----------LEWD-RTGVSNLAGEIALVAGLVMWATTYPKIRRR------------FFEVFFYTHYLYIVFM 290 (702)
T ss_pred cCchhhh----------hhcc-ccchHHHHHHHHHHHHHHHHHHhhHHHHhc------------ccHhHHHHHHHHHHHH
Confidence 1111111 0121 123346789999999999999999999998 7999999999998887
Q ss_pred HHHHHHhhhhhhccccccceehhhhhhhhhhHhHHHHHHHHhhccccEEEEEEEEecCCEEEEEEecCCCCccCCccEEE
Q 002711 531 VLFIIHGYFLYLSKKWYKRTTWMYLAVPVLLYACERLIRAFRSGYKSVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIF 610 (889)
Q Consensus 531 vll~~H~~~~~l~~~w~~~~~w~y~~~~~~l~~~drl~R~~r~~~~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~ 610 (889)
+++++|.... .+.++++++++|++||++|.+|++ .++++++++.++++++++++++|+.++|+||||+|
T Consensus 291 v~~~~H~~~~----------~~~~~~~~i~l~~~DR~lR~~r~~-~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vf 359 (702)
T PLN02292 291 LFFVFHVGIS----------FALISFPGFYIFLVDRFLRFLQSR-NNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMF 359 (702)
T ss_pred eeeehhhhhH----------HHHHHHHHHHHHHHHHHHHHHHhh-cceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEE
Confidence 7788996421 112345567899999999999875 78899999999999999999999889999999999
Q ss_pred EEEcCCCCCcccceeeeecCC--CCceEEEEEecCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeC
Q 002711 611 VNCAAVSQFQWHPFSITSAPG--DDYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDG 688 (889)
Q Consensus 611 l~~p~is~~e~HPFTIaSaP~--~~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdG 688 (889)
|++|..+.+|+|||||+|+|. ++.++++||..|+||++|.+.++ +|+. ...++|.|+|
T Consensus 360 L~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~-------------------~gd~-i~~~~V~VeG 419 (702)
T PLN02292 360 VNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLS-------------------SSDQ-IDRLAVSVEG 419 (702)
T ss_pred EEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCC-------------------CCCc-cccceEEEEC
Confidence 999999999999999999974 57899999999999999998762 2221 1134799999
Q ss_pred CCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCch
Q 002711 689 PYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSF 768 (889)
Q Consensus 689 PYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~ 768 (889)
|||.+..+...++++++||||+||||++|++++++++.... ..+.++++|+|++|+.+++
T Consensus 420 PYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~--------------------~~~~~~V~LIw~vR~~~Dl 479 (702)
T PLN02292 420 PYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTE--------------------TCKIPKITLICAFKNSSDL 479 (702)
T ss_pred CccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccc--------------------cCCCCcEEEEEEECCHHHh
Confidence 99998766667899999999999999999999997652110 0124789999999999987
Q ss_pred hHHHHHHHHH---HhhcCCCcEEEEEeeecccc
Q 002711 769 EWFRGVMNEV---AEYDQDGVIELHNYCTSVYE 798 (889)
Q Consensus 769 ~wf~~~l~el---~~~~~~~~i~l~~y~T~~~~ 798 (889)
.|..+...|+ .+...+..+++++|+|+..+
T Consensus 480 ~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~ 512 (702)
T PLN02292 480 SMLDLILPTSGLETELSSFIDIQIKAFVTREKE 512 (702)
T ss_pred hHHHHHHHhhhhHHHHhhcCCceEEEEEeCCCC
Confidence 6544444433 23323468999999998543
No 4
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=8.4e-58 Score=540.01 Aligned_cols=468 Identities=24% Similarity=0.457 Sum_probs=345.6
Q ss_pred hhHHHHHHHHHHHHHHHHhccccchh-----hhcc------eeeeeecchhhhHHHHHHHHHHHhhhh-hhhhccccccC
Q 002711 340 VMLLWLSICAGLFTWKFIQYKHRAVF-----HVMG------YCVTTAKGAAETLKFNMALILLPVCRN-TITWLRSRTKL 407 (889)
Q Consensus 340 ~~~l~~~~~v~lf~~~~~~y~~~~~~-----~~~g------~~~~~a~~~a~~l~~n~~lill~~~Rn-~l~~Lr~~t~l 407 (889)
+-++++++.+++.+|.+..|-.+..- ...+ ....+|++.|.....|++++++|++|| .+.|++|
T Consensus 110 ~e~~~~~~f~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~R~G~la~~~Lpll~llv~Rnn~l~~ltG---- 185 (722)
T PLN02844 110 LEILAVLLFFLFLAWTFYARISNDFKKLMPVKSLNLNLWQLKYLRVATRFGLLAEACLALLLLPVLRGLALFRLLG---- 185 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhC----
Confidence 34566777777777777666432211 1111 234578888998899999999999997 4788888
Q ss_pred CceecCCcchhHHHHHHHHHHHHhhhhhhhhhhcccccccccCcccccCccCccCCCCCCccccc-ccccchhHHHHHHH
Q 002711 408 GQVVPFDDNINFHKVIAVGIAIGVGLHAGAHLTCDFPRLLHATDEEYEPMKPFFGDDRPDDYWWF-VKGTEGWTGVVMVV 486 (889)
Q Consensus 408 ~~~~~~d~~~~fHr~ig~~~~~~~~lH~~~~l~~~f~~~~~~~~~~~~~l~~~~~~~~~~~yw~~-~~~~~g~tG~i~lv 486 (889)
+|||+++.||||+|+++++++++|+++|+.. +. .... . ...+|.| ..+...++|+++++
T Consensus 186 ---is~e~~i~fHrWlGr~~~llallH~i~~~i~-w~----~~~~-~-----------~~~~~~w~~~~~~~~~G~IAlv 245 (722)
T PLN02844 186 ---IQFEASVRYHVWLGTSMIFFATVHGASTLFI-WG----ISHH-I-----------QDEIWKWQKTGRIYLAGEIALV 245 (722)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----hhcc-h-----------hhhhhhhccCcchhhhHHHHHH
Confidence 9999999999999999999999999998753 11 0100 0 0011111 12223468999999
Q ss_pred HHHHHHHhhhhhHhhccCCchhhhhccccchhHHHHHHHHHHHHHHHHHHhhhhhhccccccceehhhhhhhhhhHhHHH
Q 002711 487 LMAISYTLAQPWFRRNRLNLPKILKKLTGFNAFWYSHHLFVIVYVLFIIHGYFLYLSKKWYKRTTWMYLAVPVLLYACER 566 (889)
Q Consensus 487 ~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~l~~~w~~~~~w~y~~~~~~l~~~dr 566 (889)
++++|+++|++++||+ +||+||++|++++++++++++|... ..|.|+++++++|++||
T Consensus 246 ~l~iL~itSl~~iRR~------------~YElF~~~H~L~ivflv~~~~H~~~----------~~~~~v~~~i~L~~~DR 303 (722)
T PLN02844 246 TGLVIWITSLPQIRRK------------RFEIFYYTHHLYIVFLIFFLFHAGD----------RHFYMVFPGIFLFGLDK 303 (722)
T ss_pred HHHHHHHHhhHHHHhh------------hhHHHHHHHHHHHHHHHhhhHhhcC----------cchhhhHHHHHHHHHHH
Confidence 9999999999999998 7999999999998888888999742 12235667889999999
Q ss_pred HHHHHhhccccEEEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecC--CCCceEEEEEecCc
Q 002711 567 LIRAFRSGYKSVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAP--GDDYLSIHIRTLGD 644 (889)
Q Consensus 567 l~R~~r~~~~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP--~~~~l~l~Ir~~G~ 644 (889)
++|.++++ ....++++..+|++++++++++|..++|+||||++|++|..+++|||||||+|+| +++.++++||..|+
T Consensus 304 llR~~~s~-~~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG 382 (722)
T PLN02844 304 LLRIVQSR-PETCILSARLFPCKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGG 382 (722)
T ss_pred HhheEEEe-eeEEEEEEEEecCCEEEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCC
Confidence 99988765 3445667788899999999999989999999999999999999999999999987 46789999999999
Q ss_pred chHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHH
Q 002711 645 WTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLN 724 (889)
Q Consensus 645 wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~ 724 (889)
||++|++...... .+|.......++.|+||||.+..+...++++++||||+||||++|+++++.+
T Consensus 383 ~T~~L~~~i~~~l---------------~~g~~~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~ 447 (722)
T PLN02844 383 WTNSLYNKIQAEL---------------DSETNQMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIAS 447 (722)
T ss_pred chHHHHHHHHhhc---------------cCCCCcccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHh
Confidence 9999998764210 0111111224799999999987677778999999999999999999999976
Q ss_pred HHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhh-cCCCcEEEEEeeeccccCCC--
Q 002711 725 NIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEY-DQDGVIELHNYCTSVYEEGD-- 801 (889)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~-~~~~~i~l~~y~T~~~~~~d-- 801 (889)
+.... ....++|+|+|++|+.+++.|+.++..++.+. .....+++++|+|+...+..
T Consensus 448 ~~~~~--------------------~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~~~rl 507 (722)
T PLN02844 448 QSSSR--------------------YRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPNATL 507 (722)
T ss_pred ccccc--------------------cCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHHHhcCceEEEEECCCCCCCCch
Confidence 42110 01246899999999999998888776555431 11247899999998644311
Q ss_pred -------------------hhh------------HH-----------HHHHH------hhhc--------------ccCC
Q 002711 802 -------------------ARS------------AL-----------ITMLQ------SIHH--------------AKNG 819 (889)
Q Consensus 802 -------------------~~s------------~~-----------~~~~~------~l~~--------------~~~~ 819 (889)
.++ +. +...+ +-++ +++.
T Consensus 508 ~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~lw~~~~~~~s~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 587 (722)
T PLN02844 508 RELLNQFSQVQTVNFSTKCSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIFIPSEHKSHSGVKMAASGEMKTAKEK 587 (722)
T ss_pred hhHhhccchhhhcCCCCCCCceEEeCCCchHHHHHHHHHHHHHHHHHHHHHheEEeccccccccchhcccccccccccCC
Confidence 000 00 00000 0000 0000
Q ss_pred ------------------------------------Ccccc--------------C----CccccccC-CCCHHHHHHHH
Q 002711 820 ------------------------------------LDIVS--------------G----TRVKTHFA-RPNWRTVFKHV 844 (889)
Q Consensus 820 ------------------------------------~d~~s--------------g----~~~~~~~G-RPd~~~v~~~~ 844 (889)
.+..+ + ..-.+|+| |||++++++.+
T Consensus 588 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~ 667 (722)
T PLN02844 588 TPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLKKEIPRVSQKQGIKPEEGSMEKRGPVLEEHEIHFGGRPNFQDIFSKF 667 (722)
T ss_pred CchHHHHHHHHHHHHHHheecceEeEeeeccccccCCccccccccCCCCCccccccccccccceeecCCCCCHHHHHHHh
Confidence 00000 0 12247888 99999999999
Q ss_pred HhhCCCCeEEEEEeCChhHHHHHHHHHHhhhc-----C---CCCcEEEEeeCC
Q 002711 845 AVKHTDERVGVFYCGAPGLTGELRRLSQDFSR-----K---TTTKFDFHKENF 889 (889)
Q Consensus 845 ~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~-----~---~~~~f~fh~E~F 889 (889)
.++..+.+|||.+|||++|.++|.+.|+..+. . ..+.|+||.=+|
T Consensus 668 ~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~hs~~f 720 (722)
T PLN02844 668 PKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRKMYFSFHSLNF 720 (722)
T ss_pred hhhccCCceeEEEeCchHHHHHHHHHHHhcccccccccccccCCceeeeeccc
Confidence 99998899999999999999999999999876 2 246799999887
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-39 Score=337.36 Aligned_cols=380 Identities=21% Similarity=0.303 Sum_probs=251.6
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccCCceecCCcchhHHHHHHHHHHHHhhhhhhhhhhcccccccccCccccc--CccC
Q 002711 382 LKFNMALILLPVCRNTITWLRSRTKLGQVVPFDDNINFHKVIAVGIAIGVGLHAGAHLTCDFPRLLHATDEEYE--PMKP 459 (889)
Q Consensus 382 l~~n~~lill~~~Rn~l~~Lr~~t~l~~~~~~d~~~~fHr~ig~~~~~~~~lH~~~~l~~~f~~~~~~~~~~~~--~l~~ 459 (889)
....|+++++.+.|- .|+.. ++ -+.|..+.||||.|+.++++.+.|-+......+-.. ..-.+. ++++
T Consensus 48 aL~~msl~~~LA~R~--~~iE~--~~---~GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~w~~~---~~l~~k~a~v~~ 117 (438)
T COG4097 48 ALALMSLIFLLATRL--PLIEA--WF---NGLDKIYRFHKYTSILAILLLLAHNFILFIGNWLTL---QLLNFKPAPVKP 117 (438)
T ss_pred HHHHHHHHHHHHhch--HHHhh--hh---hhhhHHhHHHHHHHHHHHHHHHHHHHHHHcCcchhc---ccccccccccch
Confidence 346788899999993 23332 21 258999999999999999999999887544422110 000000 1111
Q ss_pred ccCCCCCCcccccccccchhHHHHHHHHHHHHHHhhhhhHhhccCCchhhhhccccchhHHHHHHHHHHHHHHHHHHhhh
Q 002711 460 FFGDDRPDDYWWFVKGTEGWTGVVMVVLMAISYTLAQPWFRRNRLNLPKILKKLTGFNAFWYSHHLFVIVYVLFIIHGYF 539 (889)
Q Consensus 460 ~~~~~~~~~yw~~~~~~~g~tG~i~lv~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~vll~~H~~~ 539 (889)
+.. ..|...+. .|-++.-+++.|.+ .+.-|-+ ..||.|.+.|.+++++|++..+|...
T Consensus 118 ~l~-----~~~~s~~e-lG~~~~yi~~~lll---V~~l~~~-------------i~Ye~WR~~H~lm~vvYilg~~H~~~ 175 (438)
T COG4097 118 SLA-----GMWRSAKE-LGEWSAYIFIGLLL---VWRLWLN-------------IGYENWRIAHRLMAVVYILGLLHSYG 175 (438)
T ss_pred hhh-----hhhHHHHH-HHHHHHHHHHHHHH---HHHHHHh-------------cCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12222111 12222222222222 2222222 37999999999999999999999765
Q ss_pred hhhcccccccee-hh---hhhhhhhhHhHHHHHHHHhhccccEEEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcC
Q 002711 540 LYLSKKWYKRTT-WM---YLAVPVLLYACERLIRAFRSGYKSVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAA 615 (889)
Q Consensus 540 ~~l~~~w~~~~~-w~---y~~~~~~l~~~drl~R~~r~~~~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~ 615 (889)
..-...|..+.. |. |.+++...++.--..+..|++.+.++|+.++..+.++++++.....++.|+|||+.||.|+.
T Consensus 176 l~~~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~ 255 (438)
T COG4097 176 LLNYLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEI 255 (438)
T ss_pred hcchhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEEEEecc
Confidence 322222322222 42 11222222222233355677777888888888888888888877667889999999999987
Q ss_pred CC-CCcccceeeeecCCCCceEEEEEecCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCC
Q 002711 616 VS-QFQWHPFSITSAPGDDYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPA 694 (889)
Q Consensus 616 is-~~e~HPFTIaSaP~~~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~ 694 (889)
.. .+..|||||+++.+...+.|.||+.||+|+.|++.+ ++|+ ++.||||||.+.
T Consensus 256 ~~~~~~~HPFTIa~s~~~sel~FsIK~LGD~Tk~l~dnL-------------------k~G~------k~~vdGPYG~F~ 310 (438)
T COG4097 256 EEFRMRPHPFTIACSHEGSELRFSIKALGDFTKTLKDNL-------------------KVGT------KLEVDGPYGKFD 310 (438)
T ss_pred ccccCCCCCeeeeeCCCCceEEEEehhhhhhhHHHHHhc-------------------cCCc------eEEEecCcceee
Confidence 53 467999999999888899999999999999999866 2576 899999999984
Q ss_pred CCCCCCC-EEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHH
Q 002711 695 QDYKDYD-VLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRG 773 (889)
Q Consensus 695 ~~~~~~~-~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~ 773 (889)
+.++. +-|+||||||||||+|+++.+..+. ..+.|+|++++|+.++. -+.+
T Consensus 311 --~~~g~~~QVWIAGGIGITPFis~l~~l~~~~-------------------------s~~~V~L~Y~~~n~e~~-~y~~ 362 (438)
T COG4097 311 --FERGLNTQVWIAGGIGITPFISMLFTLAERK-------------------------SDPPVHLFYCSRNWEEA-LYAE 362 (438)
T ss_pred --cccCCcccEEEecCcCcchHHHHHHhhcccc-------------------------cCCceEEEEEecCCchh-HHHH
Confidence 44444 3899999999999999999986521 24779999999999985 5788
Q ss_pred HHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeE
Q 002711 774 VMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERV 853 (889)
Q Consensus 774 ~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v 853 (889)
+|+++++.. +++++|+.-++.. |--|.+++-+. .+++ ..-
T Consensus 363 eLr~~~qkl--~~~~lHiiDSs~~-----------------------------------g~l~~e~ler~--~~~~-~~~ 402 (438)
T COG4097 363 ELRALAQKL--PNVVLHIIDSSKD-----------------------------------GYLDQEDLERY--PDRP-RTR 402 (438)
T ss_pred HHHHHHhcC--CCeEEEEecCCCC-----------------------------------CccCHHHhhcc--cccc-Ccc
Confidence 888887643 5678887322211 01111111111 0111 123
Q ss_pred EEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 854 GVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 854 ~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
.||+|||++|++.+|+..+..+.+. + +||.|.|
T Consensus 403 sv~fCGP~~m~dsL~r~l~~~~~~i--~-~~h~E~F 435 (438)
T COG4097 403 SVFFCGPIKMMDSLRRDLKKQNVPI--T-NFHYEHF 435 (438)
T ss_pred eEEEEcCHHHHHHHHHHHHHcCCCH--H-HHHHHhc
Confidence 7999999999999999888765431 1 8999987
No 6
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=100.00 E-value=1.8e-32 Score=285.74 Aligned_cols=205 Identities=36% Similarity=0.658 Sum_probs=165.0
Q ss_pred EEEEEec-CCEEEEEEecCCCCccCCccEEEEEEcCC-CCCcccceeeeecCCC--CceEEEEEecCcchHHHHHHHhhc
Q 002711 581 LKVAVYP-GNVLALQMSKPQGFKYTSGQYIFVNCAAV-SQFQWHPFSITSAPGD--DYLSIHIRTLGDWTSQLKSIFAKV 656 (889)
Q Consensus 581 ~~v~~~~-~~v~~l~~~~p~~~~~~pGQyv~l~~p~i-s~~e~HPFTIaSaP~~--~~l~l~Ir~~G~wT~~L~~~~~~~ 656 (889)
++++.++ +++++|+++.|..+.|+||||++|++|.. +++++|||||+|+|.+ +.++|+||..+|+|+++.+.+.+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 4678888 99999999998889999999999999998 7899999999999976 899999999955666666554210
Q ss_pred cCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhccccc
Q 002711 657 CQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGI 736 (889)
Q Consensus 657 ~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~ 736 (889)
.+.....++.|+||||.+..+...++++||||||+||||++|++++++.+..+
T Consensus 82 -------------------~~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~-------- 134 (210)
T cd06186 82 -------------------PGGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK-------- 134 (210)
T ss_pred -------------------cCCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc--------
Confidence 00111238999999999875566789999999999999999999999865321
Q ss_pred ccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcc
Q 002711 737 TEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHA 816 (889)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~ 816 (889)
....++++|+|++|+.+++.||.++|.+..+..... .+++|+|+
T Consensus 135 -------------~~~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~~~~~--~~~i~~T~--------------------- 178 (210)
T cd06186 135 -------------TSRTRRVKLVWVVRDREDLEWFLDELRAAQELEVDG--EIEIYVTR--------------------- 178 (210)
T ss_pred -------------cCCccEEEEEEEECCHHHhHHHHHHHHhhhhccCCc--eEEEEEee---------------------
Confidence 012578999999999999999999987522222111 67778761
Q ss_pred cCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 817 KNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 817 ~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
|++|||++|++++++.+.. +....+.||+|+|
T Consensus 179 --------------------------------------v~~CGp~~~~~~~~~~~~~---~~~~~~~~~~e~f 210 (210)
T cd06186 179 --------------------------------------VVVCGPPGLVDDVRNAVAK---KGGTGVEFHEESF 210 (210)
T ss_pred --------------------------------------EEEECchhhccHHHHHHhh---cCCCceEEEeecC
Confidence 9999999999999999987 4467899999998
No 7
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.94 E-value=3.2e-26 Score=244.00 Aligned_cols=228 Identities=18% Similarity=0.264 Sum_probs=169.4
Q ss_pred EEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCC-CCCcccceeeeecCCCCceEEEEEec--CcchHHHHHHHhhc
Q 002711 580 ILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAV-SQFQWHPFSITSAPGDDYLSIHIRTL--GDWTSQLKSIFAKV 656 (889)
Q Consensus 580 i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~i-s~~e~HPFTIaSaP~~~~l~l~Ir~~--G~wT~~L~~~~~~~ 656 (889)
|++++.+++++++|+++.|..+.|+||||+.|++|.. +...+|||||+|+|.++.++|+||.. |..|+.|.+ +
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~~~G~~s~~l~~-l--- 77 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFK-L--- 77 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEecCCCCchHHhc-C---
Confidence 5678888999999999988778899999999999876 56789999999999888999999976 888887753 2
Q ss_pred cCCCCCCCccccccccccCCCCCCccEEEEe-CCCCCCCCCCC-CCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhccc
Q 002711 657 CQPPSVDQSGLLRADIGQADNRPRIPKLLID-GPYGAPAQDYK-DYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEE 734 (889)
Q Consensus 657 ~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vd-GPYG~~~~~~~-~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~ 734 (889)
.+|+ .+.+. ||||.+..+.. ..+.++|||||+||||++++++++....
T Consensus 78 ----------------~~Gd------~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~-------- 127 (241)
T cd06195 78 ----------------KPGD------TIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE-------- 127 (241)
T ss_pred ----------------CCCC------EEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC--------
Confidence 2577 89999 99999764333 4679999999999999999999986431
Q ss_pred ccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhh
Q 002711 735 GITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIH 814 (889)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~ 814 (889)
..++++|+|++|+.+++ +|.++|+++++.. ...++++.++|+..+..
T Consensus 128 -----------------~~~~v~l~~~~r~~~d~-~~~~el~~l~~~~-~~~~~~~~~~s~~~~~~-------------- 174 (241)
T cd06195 128 -----------------RFDKIVLVHGVRYAEEL-AYQDEIEALAKQY-NGKFRYVPIVSREKENG-------------- 174 (241)
T ss_pred -----------------CCCcEEEEEccCCHHHh-hhHHHHHHHHhhc-CCCEEEEEEECcCCccC--------------
Confidence 24689999999999997 6889898887641 24688877776432110
Q ss_pred cccCCCccccCCccccccCCCCHH---HHHHHHHhhC-CCCeEEEEEeCChhHHHHHHHHHHhhhcCC---CCcEEEEee
Q 002711 815 HAKNGLDIVSGTRVKTHFARPNWR---TVFKHVAVKH-TDERVGVFYCGAPGLTGELRRLSQDFSRKT---TTKFDFHKE 887 (889)
Q Consensus 815 ~~~~~~d~~sg~~~~~~~GRPd~~---~v~~~~~~~~-~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~---~~~f~fh~E 887 (889)
+ ..||.+-. +.+.+..... ..+...||+|||++|++.+++.+.+..... ...-.+|.|
T Consensus 175 ----------~-----~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~~~~~~~~~~E 239 (241)
T cd06195 175 ----------A-----LTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQELLKEKGFSKNHRRKPGNITVE 239 (241)
T ss_pred ----------C-----CceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHHHHHHHcCCCccccCCCceEEEe
Confidence 0 01232210 1111111111 123457999999999999999998875431 122789999
Q ss_pred CC
Q 002711 888 NF 889 (889)
Q Consensus 888 ~F 889 (889)
.|
T Consensus 240 ~~ 241 (241)
T cd06195 240 KY 241 (241)
T ss_pred cC
Confidence 88
No 8
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.94 E-value=3.4e-26 Score=240.18 Aligned_cols=191 Identities=20% Similarity=0.312 Sum_probs=146.1
Q ss_pred EEEecCCEEEEEEecCCC---CccCCccEEEEEEcCCC----------------CCcccceeeeecCCC----CceEEEE
Q 002711 583 VAVYPGNVLALQMSKPQG---FKYTSGQYIFVNCAAVS----------------QFQWHPFSITSAPGD----DYLSIHI 639 (889)
Q Consensus 583 v~~~~~~v~~l~~~~p~~---~~~~pGQyv~l~~p~is----------------~~e~HPFTIaSaP~~----~~l~l~I 639 (889)
.+.++++|.++++..|.+ +.|+|||||.|++|... ...++||||+|+|++ +.+.|+|
T Consensus 3 ~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~v 82 (220)
T cd06197 3 SEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITV 82 (220)
T ss_pred ceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEE
Confidence 466789999999998877 89999999999998531 134688999999964 6899999
Q ss_pred EecCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCC---CCCCEEEEEEcCcchhhHH
Q 002711 640 RTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDY---KDYDVLLLVGLGIGATPLI 716 (889)
Q Consensus 640 r~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~---~~~~~vllVagGiGITP~l 716 (889)
|..|+||+.|.+..... ...|+ .+.|+||||.+..+. ..++.++||||||||||++
T Consensus 83 k~~G~~T~~L~~~~~~~---------------~~~G~------~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~ 141 (220)
T cd06197 83 RKKGPVTGFLFQVARRL---------------REQGL------EVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFL 141 (220)
T ss_pred EeCCCCCHHHHHhhhcc---------------cCCCc------eEEEEecCCcccCCcccccCCceEEEEecccchhhHH
Confidence 99999999999876310 00144 799999999976432 3467899999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeecc
Q 002711 717 SIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSV 796 (889)
Q Consensus 717 sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~ 796 (889)
|++++++.... ..++++|+|++|+.+++ +|.++|.++.+. .++++.+.|
T Consensus 142 sil~~l~~~~~------------------------~~~~v~l~~~~r~~~~~-~~~~el~~~~~~----~~~~~~~~~-- 190 (220)
T cd06197 142 AMLRAILSSRN------------------------TTWDITLLWSLREDDLP-LVMDTLVRFPGL----PVSTTLFIT-- 190 (220)
T ss_pred HHHHHHHhccc------------------------CCCcEEEEEEecchhhH-HHHHHHHhccCC----ceEEEEEEe--
Confidence 99999875311 14689999999999975 677766543321 122222111
Q ss_pred ccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhc
Q 002711 797 YEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSR 876 (889)
Q Consensus 797 ~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 876 (889)
+ .||+|||++|++.+++.+++.
T Consensus 191 ------------------------------------~--------------------~v~~CGP~~m~~~~~~~~~~~-- 212 (220)
T cd06197 191 ------------------------------------S--------------------EVYLCGPPALEKAVLEWLEGK-- 212 (220)
T ss_pred ------------------------------------c--------------------cEEEECcHHHHHHHHHHhhhc--
Confidence 0 599999999999999988763
Q ss_pred CCCCcEEEEeeCC
Q 002711 877 KTTTKFDFHKENF 889 (889)
Q Consensus 877 ~~~~~f~fh~E~F 889 (889)
.+|.|.|
T Consensus 213 ------~~~~e~f 219 (220)
T cd06197 213 ------KVHRESF 219 (220)
T ss_pred ------eeEeccc
Confidence 7899988
No 9
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.94 E-value=7.7e-26 Score=241.37 Aligned_cols=233 Identities=18% Similarity=0.280 Sum_probs=176.9
Q ss_pred HHHHHHHHhh----ccccEEEEEEEEecCCEEEEEEecCCC-CccCCccEEEEEEcCCCCCcccceeeeecCC--CCceE
Q 002711 564 CERLIRAFRS----GYKSVRILKVAVYPGNVLALQMSKPQG-FKYTSGQYIFVNCAAVSQFQWHPFSITSAPG--DDYLS 636 (889)
Q Consensus 564 ~drl~R~~r~----~~~~~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~--~~~l~ 636 (889)
+||.+|.++. ....++|++++.+++++.++++..|.. ..|+||||++|.+|..+...+|||||+|.|. ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 4677777554 334678889999999999999998765 4799999999999866666789999999986 78899
Q ss_pred EEEEec--CcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhh
Q 002711 637 IHIRTL--GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATP 714 (889)
Q Consensus 637 l~Ir~~--G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP 714 (889)
|+||.. |.+|..|.+.+ ++|+ +|.|.||||.+..+-..++.+++||||+||||
T Consensus 82 ~~ik~~~~G~~s~~l~~~~-------------------~~Gd------~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap 136 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHL-------------------APGD------VVELSQPQGDFVLPDPLPPRLLLIAAGSGITP 136 (243)
T ss_pred EEEEEcCCCcchhHHHhcC-------------------CCCC------EEEEECCceeeecCCCCCCCEEEEecCccHhH
Confidence 999998 88898886533 2576 89999999997544334678999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeee
Q 002711 715 LISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCT 794 (889)
Q Consensus 715 ~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T 794 (889)
++|+++++.... ..++++++|++|+.+++ ++.++|.++++.. ..++++.++|
T Consensus 137 ~~s~l~~~~~~~-------------------------~~~~i~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~s 188 (243)
T cd06216 137 VMSMLRTLLARG-------------------------PTADVVLLYYARTREDV-IFADELRALAAQH--PNLRLHLLYT 188 (243)
T ss_pred HHHHHHHHHhcC-------------------------CCCCEEEEEEcCChhhh-HHHHHHHHHHHhC--CCeEEEEEEc
Confidence 999999986541 14679999999999875 7888888876543 4577777766
Q ss_pred ccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhh
Q 002711 795 SVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDF 874 (889)
Q Consensus 795 ~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~ 874 (889)
+. + ..||.+.. .+++..... ....||+|||++|++++++.+.+.
T Consensus 189 ~~---~------------------------------~~g~~~~~-~l~~~~~~~--~~~~vyvcGp~~m~~~~~~~l~~~ 232 (243)
T cd06216 189 RE---E------------------------------LDGRLSAA-HLDAVVPDL--ADRQVYACGPPGFLDAAEELLEAA 232 (243)
T ss_pred CC---c------------------------------cCCCCCHH-HHHHhccCc--ccCeEEEECCHHHHHHHHHHHHHC
Confidence 32 0 11344422 233322211 235899999999999999998875
Q ss_pred hcCCCCcEEEEeeCC
Q 002711 875 SRKTTTKFDFHKENF 889 (889)
Q Consensus 875 ~~~~~~~f~fh~E~F 889 (889)
+ -. -..|.|.|
T Consensus 233 G---v~-~~i~~e~F 243 (243)
T cd06216 233 G---LA-DRLHTERF 243 (243)
T ss_pred C---Cc-cceeeccC
Confidence 3 33 45888887
No 10
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.94 E-value=5.5e-26 Score=239.45 Aligned_cols=220 Identities=20% Similarity=0.347 Sum_probs=165.5
Q ss_pred EEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCC-CCceEEEEEec--CcchHHHHHHHhh
Q 002711 579 RILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRTL--GDWTSQLKSIFAK 655 (889)
Q Consensus 579 ~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~-~~~l~l~Ir~~--G~wT~~L~~~~~~ 655 (889)
+|++++.+++++.+|++..|..++|+||||+.|.+|.. ++|||||+|.|. ++.++++||.. |.+|+.|.+.+
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l-- 76 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEEL-- 76 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhc--
Confidence 57788889999999999988788999999999999864 589999999997 68899999998 77999887644
Q ss_pred ccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccc
Q 002711 656 VCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEG 735 (889)
Q Consensus 656 ~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~ 735 (889)
++|+ +|.|.||||.+......++.++|||||+||||++|++++++...
T Consensus 77 -----------------~~G~------~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~--------- 124 (224)
T cd06189 77 -----------------KENG------LVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG--------- 124 (224)
T ss_pred -----------------cCCC------EEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC---------
Confidence 2566 79999999998654345778999999999999999999987541
Q ss_pred cccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhc
Q 002711 736 ITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHH 815 (889)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~ 815 (889)
..++++|+|++|+.+++ ++.++++++++.. .++.++.++++..+..
T Consensus 125 ----------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~~--------------- 170 (224)
T cd06189 125 ----------------SKRPIHLYWGARTEEDL-YLDELLEAWAEAH--PNFTYVPVLSEPEEGW--------------- 170 (224)
T ss_pred ----------------CCCCEEEEEecCChhhc-cCHHHHHHHHHhC--CCeEEEEEeCCCCcCC---------------
Confidence 14679999999999987 5778888877643 4577776666431100
Q ss_pred ccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 816 AKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 816 ~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
.| +.|+.+ +.+.+... +.....||+|||++|++++++.+.+.+. ..-.+|.|.|
T Consensus 171 --------~g-----~~g~v~-~~l~~~~~---~~~~~~v~vCGp~~m~~~~~~~l~~~G~---~~~~i~~e~f 224 (224)
T cd06189 171 --------QG-----RTGLVH-EAVLEDFP---DLSDFDVYACGSPEMVYAARDDFVEKGL---PEENFFSDAF 224 (224)
T ss_pred --------cc-----ccccHH-HHHHhhcc---CccccEEEEECCHHHHHHHHHHHHHcCC---CHHHcccCCC
Confidence 00 011211 11111111 1123579999999999999999987643 3456788887
No 11
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.94 E-value=6.9e-26 Score=237.34 Aligned_cols=207 Identities=22% Similarity=0.404 Sum_probs=153.4
Q ss_pred CCEEEEEEecCCC-CccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEecCcchHHHHHHHhhccCCCCCCCc
Q 002711 588 GNVLALQMSKPQG-FKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQS 665 (889)
Q Consensus 588 ~~v~~l~~~~p~~-~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s 665 (889)
.++.+|++..+.+ +.|+|||||.|++|..+.+++|||||+|.|.+ +.++|+||..|++|+.|.+.+
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l------------ 74 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERL------------ 74 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhC------------
Confidence 3677888876665 78999999999998766679999999999876 599999999999999997543
Q ss_pred cccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcC
Q 002711 666 GLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKN 745 (889)
Q Consensus 666 ~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~ 745 (889)
++|+ +|.|.||||.+..+.. ++.++|||||+||||++|+++++..+.
T Consensus 75 -------~~G~------~v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~------------------- 121 (216)
T cd06198 75 -------KPGT------RVTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG------------------- 121 (216)
T ss_pred -------CCCC------EEEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC-------------------
Confidence 2566 8999999999764333 689999999999999999999986531
Q ss_pred CCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccC
Q 002711 746 SKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSG 825 (889)
Q Consensus 746 ~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg 825 (889)
..++++++|++|+.+++ +|.++|+++.... .+.++...+...
T Consensus 122 ------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~---~~~~~~~~~~~~---------------------------- 163 (216)
T cd06198 122 ------DARPVTLFYCVRDPEDA-VFLDELRALAAAA---GVVLHVIDSPSD---------------------------- 163 (216)
T ss_pred ------CCceEEEEEEECCHHHh-hhHHHHHHHHHhc---CeEEEEEeCCCC----------------------------
Confidence 14689999999999986 6888888876543 455655333210
Q ss_pred CccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 826 TRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 826 ~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
++.+...++.... .+.....||+|||++|++++++.+.+.+ ...-.+|.|.|
T Consensus 164 -------~~~~~~~~~~~~~--~~~~~~~vyicGp~~m~~~v~~~l~~~G---v~~~~I~~E~f 215 (216)
T cd06198 164 -------GRLTLEQLVRALV--PDLADADVWFCGPPGMADALEKGLRALG---VPARRFHYERF 215 (216)
T ss_pred -------cccchhhhhhhcC--CCcCCCeEEEECcHHHHHHHHHHHHHcC---CChHhcchhhc
Confidence 1111111111111 1123457999999999999999998753 23445677776
No 12
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.94 E-value=1.3e-25 Score=240.18 Aligned_cols=231 Identities=18% Similarity=0.288 Sum_probs=174.8
Q ss_pred cccEEEEEEEEecCCEEEEEEecCCC---CccCCccEEEEEEcCCC--CCcccceeeeecCCCCceEEEEEec--CcchH
Q 002711 575 YKSVRILKVAVYPGNVLALQMSKPQG---FKYTSGQYIFVNCAAVS--QFQWHPFSITSAPGDDYLSIHIRTL--GDWTS 647 (889)
Q Consensus 575 ~~~~~i~~v~~~~~~v~~l~~~~p~~---~~~~pGQyv~l~~p~is--~~e~HPFTIaSaP~~~~l~l~Ir~~--G~wT~ 647 (889)
+..++|.+++.+++++.+|++..|.. +.|+||||+.|.++..+ ...+|||||+|.|.++.+.|+||.. |..|+
T Consensus 6 ~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~~l~~~ik~~~~G~~s~ 85 (247)
T cd06184 6 FRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGLVSN 85 (247)
T ss_pred cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCCCeEEEEEEEcCCCcchH
Confidence 45678889999999999999998753 68999999999997543 4689999999999888999999988 88888
Q ss_pred HHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHh
Q 002711 648 QLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIK 727 (889)
Q Consensus 648 ~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~ 727 (889)
.|.+.+ ++|+ ++.|.||||.+..+...++.++|||||+||||++++++++.++.
T Consensus 86 ~l~~~~-------------------~~Gd------~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~- 139 (247)
T cd06184 86 YLHDNV-------------------KVGD------VLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG- 139 (247)
T ss_pred HHHhcC-------------------CCCC------EEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC-
Confidence 876532 2677 89999999997654435678999999999999999999987541
Q ss_pred hhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHH
Q 002711 728 QQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALI 807 (889)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~ 807 (889)
..++++|+|++|+.+++ +|.++|+++++.. .+++++.++++..+...
T Consensus 140 ------------------------~~~~i~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~~~------ 186 (247)
T cd06184 140 ------------------------PGRPVTFIHAARNSAVH-AFRDELEELAARL--PNLKLHVFYSEPEAGDR------ 186 (247)
T ss_pred ------------------------CCCcEEEEEEcCchhhH-HHHHHHHHHHhhC--CCeEEEEEECCCCcccc------
Confidence 14679999999999985 6888888886542 46788887775321100
Q ss_pred HHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEee
Q 002711 808 TMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKE 887 (889)
Q Consensus 808 ~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E 887 (889)
. ....+.||++...+.+ . .+.....||+|||++|++++++.+.+.+. ..-.+|.|
T Consensus 187 ---------------~---~~~~~~g~~~~~~l~~-~---~~~~~~~v~icGp~~m~~~v~~~l~~~G~---~~~~i~~e 241 (247)
T cd06184 187 ---------------E---EDYDHAGRIDLALLRE-L---LLPADADFYLCGPVPFMQAVREGLKALGV---PAERIHYE 241 (247)
T ss_pred ---------------c---ccccccCccCHHHHhh-c---cCCCCCEEEEECCHHHHHHHHHHHHHcCC---CHHHeeee
Confidence 0 0112346776544333 1 11234689999999999999999987643 33457777
Q ss_pred CC
Q 002711 888 NF 889 (889)
Q Consensus 888 ~F 889 (889)
.|
T Consensus 242 ~f 243 (247)
T cd06184 242 VF 243 (247)
T ss_pred cc
Confidence 76
No 13
>PRK08051 fre FMN reductase; Validated
Probab=99.94 E-value=1.6e-25 Score=237.30 Aligned_cols=223 Identities=18% Similarity=0.258 Sum_probs=161.8
Q ss_pred ccEEEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecC-CCCceEEEEEecCc--chHHHHHH
Q 002711 576 KSVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAP-GDDYLSIHIRTLGD--WTSQLKSI 652 (889)
Q Consensus 576 ~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP-~~~~l~l~Ir~~G~--wT~~L~~~ 652 (889)
..++|.++..+++++..|++..+..+.|+||||++|++|.. +.|||||+|.| +++.++|+||..++ .+..+.+.
T Consensus 3 ~~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 3 LSCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPREKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred eEEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHH
Confidence 35788899999999999999887788999999999999763 67999999999 47889999999754 45555433
Q ss_pred HhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhc
Q 002711 653 FAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEI 732 (889)
Q Consensus 653 ~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~ 732 (889)
+ ++|+ +|.|+||||.+..+....+.+||||||+||||++|+++++....
T Consensus 80 l-------------------~~G~------~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~------ 128 (232)
T PRK08051 80 I-------------------LKDG------EIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG------ 128 (232)
T ss_pred c-------------------CCCC------EEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC------
Confidence 2 3676 89999999998644334578999999999999999999987541
Q ss_pred ccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHh
Q 002711 733 EEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQS 812 (889)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~ 812 (889)
..++++++|++|+.+++ +|.++|.++++.. .++.++..+++..+ ..
T Consensus 129 -------------------~~~~v~l~~g~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~~~~~~-~~----------- 174 (232)
T PRK08051 129 -------------------PNRPITLYWGGREEDHL-YDLDELEALALKH--PNLHFVPVVEQPEE-GW----------- 174 (232)
T ss_pred -------------------CCCcEEEEEEeccHHHh-hhhHHHHHHHHHC--CCcEEEEEeCCCCC-Cc-----------
Confidence 14679999999999997 7899898887654 35666654432110 00
Q ss_pred hhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHH-HhhhcCCCCcEEEEeeCC
Q 002711 813 IHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLS-QDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 813 l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~-~~~~~~~~~~f~fh~E~F 889 (889)
.| ..|+.. +.+++.... .....||+|||++|++.+++.+ .+.+- ..-.+|.|.|
T Consensus 175 -----------~~-----~~g~v~-~~l~~~~~~---~~~~~vyicGp~~m~~~v~~~l~~~~G~---~~~~i~~e~f 229 (232)
T PRK08051 175 -----------QG-----KTGTVL-TAVMQDFGS---LAEYDIYIAGRFEMAKIARELFCRERGA---REEHLFGDAF 229 (232)
T ss_pred -----------cc-----ceeeeh-HHHHhhccC---cccCEEEEECCHHHHHHHHHHHHHHcCC---CHHHeecccc
Confidence 01 012221 222222211 1234699999999999999988 76532 3345677776
No 14
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.94 E-value=3e-25 Score=234.79 Aligned_cols=225 Identities=22% Similarity=0.355 Sum_probs=169.1
Q ss_pred EEEEEEEecCCEEEEEEecCCC--CccCCccEEEEEEcCCCCCcccceeeeecCCCC-ceEEEEEec--CcchHHHHHHH
Q 002711 579 RILKVAVYPGNVLALQMSKPQG--FKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDD-YLSIHIRTL--GDWTSQLKSIF 653 (889)
Q Consensus 579 ~i~~v~~~~~~v~~l~~~~p~~--~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~-~l~l~Ir~~--G~wT~~L~~~~ 653 (889)
+|+++..+++++..++++.|.. +.|+||||+.|.+|..+...+|||||+|+|.++ .+.|+||.. |..|+.|.+.+
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~~ 81 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDNL 81 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhcC
Confidence 6778888999999999998876 789999999999986665668999999998754 699999998 88888776433
Q ss_pred hhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcc
Q 002711 654 AKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIE 733 (889)
Q Consensus 654 ~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~ 733 (889)
++|+ .+.|.||||.+.......+.+||||||+||||+++++++++...
T Consensus 82 -------------------~~G~------~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~------- 129 (231)
T cd06215 82 -------------------KVGD------ELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR------- 129 (231)
T ss_pred -------------------CCCC------EEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC-------
Confidence 2566 89999999997643334678999999999999999999986531
Q ss_pred cccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhh
Q 002711 734 EGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSI 813 (889)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l 813 (889)
..++++++|++|+.+++ .+.+.|+++.+.. ..++++.++|+....
T Consensus 130 ------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~~~~~~~-------------- 174 (231)
T cd06215 130 ------------------PDADIVFIHSARSPADI-IFADELEELARRH--PNFRLHLILEQPAPG-------------- 174 (231)
T ss_pred ------------------CCCcEEEEEecCChhhh-hHHHHHHHHHHHC--CCeEEEEEEccCCCC--------------
Confidence 14679999999999987 4778888877643 358888777753210
Q ss_pred hcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 814 HHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 814 ~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
......||.+.. ++++..... ....||+|||++|++.+++.+.+... ..-.+|.|.|
T Consensus 175 -------------~~~~~~g~~~~~-~l~~~~~~~--~~~~v~icGp~~m~~~~~~~l~~~gv---~~~~i~~e~f 231 (231)
T cd06215 175 -------------AWGGYRGRLNAE-LLALLVPDL--KERTVFVCGPAGFMKAVKSLLAELGF---PMSRFHQESF 231 (231)
T ss_pred -------------cccccCCcCCHH-HHHHhcCCc--cCCeEEEECCHHHHHHHHHHHHHcCC---CHHHeeeecC
Confidence 001123666533 333332221 23479999999999999999987643 3445677877
No 15
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.94 E-value=3.9e-25 Score=234.57 Aligned_cols=229 Identities=17% Similarity=0.264 Sum_probs=168.8
Q ss_pred cccEEEEEEEEecCCEEEEEEecCCC--CccCCccEEEEEEcCC-CCCcccceeeeecCCC-CceEEEEEec--CcchHH
Q 002711 575 YKSVRILKVAVYPGNVLALQMSKPQG--FKYTSGQYIFVNCAAV-SQFQWHPFSITSAPGD-DYLSIHIRTL--GDWTSQ 648 (889)
Q Consensus 575 ~~~~~i~~v~~~~~~v~~l~~~~p~~--~~~~pGQyv~l~~p~i-s~~e~HPFTIaSaP~~-~~l~l~Ir~~--G~wT~~ 648 (889)
|..++|.+++.+++++.++++..|.. +.|+||||+.|++|.. +...+|||||+|.|.+ +.+.|+||.. |..|..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~ 80 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPY 80 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHH
Confidence 45788999999999999999998876 7899999999999843 3356799999999865 5899999987 557777
Q ss_pred HHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhh
Q 002711 649 LKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQ 728 (889)
Q Consensus 649 L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~ 728 (889)
|.+.+ ++|+ +|.|.||||.+..+....+.++|||||+||||+++++++++++.
T Consensus 81 l~~~l-------------------~~Gd------~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~-- 133 (235)
T cd06217 81 LHDEV-------------------KVGD------LLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG-- 133 (235)
T ss_pred HHhcC-------------------CCCC------EEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC--
Confidence 76533 2576 89999999997543334678999999999999999999987541
Q ss_pred hhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHH
Q 002711 729 QKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALIT 808 (889)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~ 808 (889)
..++++++|++|+.+++ ++.++|.++++.. ..+.++.++|+..+.+
T Consensus 134 -----------------------~~~~i~l~~~~r~~~~~-~~~~el~~~~~~~--~~~~~~~~~s~~~~~~-------- 179 (235)
T cd06217 134 -----------------------WPVPFRLLYSARTAEDV-IFRDELEQLARRH--PNLHVTEALTRAAPAD-------- 179 (235)
T ss_pred -----------------------CCceEEEEEecCCHHHh-hHHHHHHHHHHHC--CCeEEEEEeCCCCCCC--------
Confidence 14679999999999986 6888888877643 3577777666421000
Q ss_pred HHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeC
Q 002711 809 MLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKEN 888 (889)
Q Consensus 809 ~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~ 888 (889)
. ..+.||.+.. ++++.... .....||+|||++|++++++.+.+.+. ..=.+|.|.
T Consensus 180 --------------~-----~~~~g~~~~~-~l~~~~~~--~~~~~v~icGp~~m~~~v~~~l~~~Gv---~~~~i~~E~ 234 (235)
T cd06217 180 --------------W-----LGPAGRITAD-LIAELVPP--LAGRRVYVCGPPAFVEAATRLLLELGV---PRDRIRTEA 234 (235)
T ss_pred --------------c-----CCcCcEeCHH-HHHhhCCC--ccCCEEEEECCHHHHHHHHHHHHHcCC---CHHHEeecc
Confidence 0 1123565532 23332111 123579999999999999999987643 233467787
Q ss_pred C
Q 002711 889 F 889 (889)
Q Consensus 889 F 889 (889)
|
T Consensus 235 f 235 (235)
T cd06217 235 F 235 (235)
T ss_pred C
Confidence 7
No 16
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.94 E-value=3.3e-25 Score=234.70 Aligned_cols=226 Identities=18% Similarity=0.272 Sum_probs=165.5
Q ss_pred EEEEEEEecCCEEEEEEecCCC--CccCCccEEEEEEcCCCCCcccceeeeecCCCCceEEEEEec--CcchHHHHHHHh
Q 002711 579 RILKVAVYPGNVLALQMSKPQG--FKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTL--GDWTSQLKSIFA 654 (889)
Q Consensus 579 ~i~~v~~~~~~v~~l~~~~p~~--~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~~l~l~Ir~~--G~wT~~L~~~~~ 654 (889)
+|++++.+++++.++++..|.. +.|+||||+.|.++..+...+|||||+|.|.++.++|+||.. |.+|..|.+.+
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~l~~~v~~~~~G~~s~~l~~~~- 80 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREHI- 80 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCCCCeEEEEEEECCCCccchHHHhcC-
Confidence 5778888999999999997654 689999999999975555678999999998878899999988 77888886433
Q ss_pred hccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhccc
Q 002711 655 KVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEE 734 (889)
Q Consensus 655 ~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~ 734 (889)
++|+ ++.|.||||.+..+....+.+||||||+||||++|++++++...
T Consensus 81 ------------------~~Gd------~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~-------- 128 (231)
T cd06191 81 ------------------QPGM------TVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA-------- 128 (231)
T ss_pred ------------------CCCC------EEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC--------
Confidence 2677 89999999997544334578999999999999999999986431
Q ss_pred ccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhh
Q 002711 735 GITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIH 814 (889)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~ 814 (889)
..++++++|++|+.+++ +|.++|+++++.. ..++++.++|+.....+
T Consensus 129 -----------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~s~~~~~~~------------- 175 (231)
T cd06191 129 -----------------PESDFTLIHSARTPADM-IFAQELRELADKP--QRLRLLCIFTRETLDSD------------- 175 (231)
T ss_pred -----------------CCCCEEEEEecCCHHHH-hHHHHHHHHHHhC--CCeEEEEEECCCCCCcc-------------
Confidence 14679999999999987 5788888887542 46888777765321100
Q ss_pred cccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 815 HAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 815 ~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
..+.+ |+- -..+.+.+... .....||+|||++|++++++.+.+.+ ...-.+|.|.|
T Consensus 176 --------~~~~~-----~~~-~~~l~~~~~~~--~~~~~vyicGp~~mv~~~~~~l~~~G---~~~~~i~~E~f 231 (231)
T cd06191 176 --------LLHGR-----IDG-EQSLGAALIPD--RLEREAFICGPAGMMDAVETALKELG---MPPERIHTERF 231 (231)
T ss_pred --------ccCCc-----ccc-cHHHHHHhCcc--ccCCeEEEECCHHHHHHHHHHHHHcC---CCHHHeeeccC
Confidence 00000 111 12233222111 12347999999999999999997754 23445777887
No 17
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.94 E-value=4.3e-25 Score=233.16 Aligned_cols=222 Identities=16% Similarity=0.269 Sum_probs=165.1
Q ss_pred cEEEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEec--CcchHHHHHHH
Q 002711 577 SVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTL--GDWTSQLKSIF 653 (889)
Q Consensus 577 ~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~--G~wT~~L~~~~ 653 (889)
..+|.+++.+++++.++++..|..+.|+||||+.|++|... .+|||||+|+|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCCCCEEEEEEEECCCCcchHHHHhcC
Confidence 35788888999999999999877788999999999998654 6899999999874 7899999987 88999886543
Q ss_pred hhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcc
Q 002711 654 AKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIE 733 (889)
Q Consensus 654 ~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~ 733 (889)
++|+ .|.|.||||.+..+ ...+.+||||||+||||++++++++..+.
T Consensus 80 -------------------~~G~------~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~------- 126 (227)
T cd06213 80 -------------------RTGE------RLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAG------- 126 (227)
T ss_pred -------------------CCCC------EEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcC-------
Confidence 2576 89999999998643 23478999999999999999999986531
Q ss_pred cccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhh
Q 002711 734 EGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSI 813 (889)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l 813 (889)
..++++++|++|+.+++ ++.+++.++++... ..+.++.++++..+..+
T Consensus 127 ------------------~~~~i~l~~~~r~~~~~-~~~~~l~~l~~~~~-~~~~~~~~~s~~~~~~~------------ 174 (227)
T cd06213 127 ------------------TKRDVTLLFGARTQRDL-YALDEIAAIAARWR-GRFRFIPVLSEEPADSS------------ 174 (227)
T ss_pred ------------------CCCcEEEEEeeCCHHHh-ccHHHHHHHHHhcc-CCeEEEEEecCCCCCCC------------
Confidence 24679999999999886 67788888775422 45777766654211000
Q ss_pred hcccCCCccccCCccccccCCC-CHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 814 HHAKNGLDIVSGTRVKTHFARP-NWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 814 ~~~~~~~d~~sg~~~~~~~GRP-d~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
..|++ ...+.+.+.. . ....||+|||++|++.+++.+.+.+. ..-.+|.|.|
T Consensus 175 -----------------~~g~~g~v~~~l~~~~---~-~~~~v~~CGp~~~~~~~~~~l~~~G~---~~~~i~~e~f 227 (227)
T cd06213 175 -----------------WKGARGLVTEHIAEVL---L-AATEAYLCGPPAMIDAAIAVLRALGI---AREHIHADRF 227 (227)
T ss_pred -----------------ccCCcccHHHHHHhhc---c-CCCEEEEECCHHHHHHHHHHHHHcCC---CHHHEeccCC
Confidence 00121 2223333322 1 23479999999999999999987542 3445777877
No 18
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.93 E-value=3.4e-25 Score=233.07 Aligned_cols=216 Identities=21% Similarity=0.289 Sum_probs=160.5
Q ss_pred EEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEec--CcchHHHHHHHhhcc
Q 002711 581 LKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTL--GDWTSQLKSIFAKVC 657 (889)
Q Consensus 581 ~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~--G~wT~~L~~~~~~~~ 657 (889)
.+++.+++++++++++.|..+.|+||||++|++|.. ..|||||+|.|.+ +.+.|+||.. |.+|..|.+.+
T Consensus 2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~---- 74 (222)
T cd06194 2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEA---- 74 (222)
T ss_pred ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCCCCCEEEEEEEeccCCccchHHHhcc----
Confidence 467788899999999988889999999999999863 5699999999876 7899999986 66888877643
Q ss_pred CCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCC-CCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhccccc
Q 002711 658 QPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDY-KDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGI 736 (889)
Q Consensus 658 ~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~-~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~ 736 (889)
++|+ +|.|.||||.+.... ..++.+++||||+||||+++++++++...
T Consensus 75 ---------------~~G~------~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~---------- 123 (222)
T cd06194 75 ---------------RPGH------ALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG---------- 123 (222)
T ss_pred ---------------CCCC------EEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC----------
Confidence 2566 899999999986432 45678999999999999999999987431
Q ss_pred ccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcc
Q 002711 737 TEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHA 816 (889)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~ 816 (889)
..++++++|++|+.+++ +|.++++++++.. ..++++..+++.... .
T Consensus 124 ---------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~~~~~~~-~--------------- 169 (222)
T cd06194 124 ---------------HQGEIRLVHGARDPDDL-YLHPALLWLAREH--PNFRYIPCVSEGSQG-D--------------- 169 (222)
T ss_pred ---------------CCccEEEEEecCChhhc-cCHHHHHHHHHHC--CCeEEEEEEccCCCC-C---------------
Confidence 14679999999999986 6888888887643 357776666542110 0
Q ss_pred cCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 817 KNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 817 ~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
++.....+...+.. ......||+|||++|++++++.+.+.. -..-.+|.|.|
T Consensus 170 ----------------~~~~~~~~~~~~~~--~~~~~~vyicGp~~m~~~~~~~L~~~G---v~~~~i~~e~f 221 (222)
T cd06194 170 ----------------PRVRAGRIAAHLPP--LTRDDVVYLCGAPSMVNAVRRRAFLAG---APMKRIYADPF 221 (222)
T ss_pred ----------------cccccchhhhhhcc--ccCCCEEEEeCCHHHHHHHHHHHHHcC---CCHHHeeeccc
Confidence 00011122222211 112357999999999999999988753 33445777776
No 19
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.93 E-value=5.9e-25 Score=232.82 Aligned_cols=227 Identities=13% Similarity=0.197 Sum_probs=163.9
Q ss_pred EEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEec--CcchHHHHHHHhhcc
Q 002711 581 LKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTL--GDWTSQLKSIFAKVC 657 (889)
Q Consensus 581 ~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~--G~wT~~L~~~~~~~~ 657 (889)
++++.+++++.+|++..+..+.|+||||++|++|..+ .+|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~~---- 75 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANASGEWEFIIKRKPGGAASNALFDNL---- 75 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhcC----
Confidence 4567788999999999888889999999999998754 6799999999875 7899999987 77898887633
Q ss_pred CCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccc
Q 002711 658 QPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGIT 737 (889)
Q Consensus 658 ~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~ 737 (889)
++|+ +|.|.||||.+.......+.+||||||+||||++|+++++..+...
T Consensus 76 ---------------~~g~------~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~--------- 125 (232)
T cd06190 76 ---------------EPGD------ELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYL--------- 125 (232)
T ss_pred ---------------CCCC------EEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccC---------
Confidence 2566 7999999999864334467899999999999999999998653110
Q ss_pred cCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhccc
Q 002711 738 EDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAK 817 (889)
Q Consensus 738 ~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~ 817 (889)
...+++++|++|+.+++ .|.+++.++.+.. ..+.++..+|+.......
T Consensus 126 --------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~s~~~~~~~~--------------- 173 (232)
T cd06190 126 --------------SDRPVDLFYGGRTPSDL-CALDELSALVALG--ARLRVTPAVSDAGSGSAA--------------- 173 (232)
T ss_pred --------------CCCeEEEEEeecCHHHH-hhHHHHHHHHHhC--CCEEEEEEeCCCCCCcCC---------------
Confidence 24689999999999987 5788888887653 457777666542111000
Q ss_pred CCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 818 NGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 818 ~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
... .+.|+.. +.+.+..... .....||+|||++|++.+++...+.... ..=.+|.|.|
T Consensus 174 ----~~~-----~~~g~v~--~~l~~~~~~~-~~~~~vyiCGp~~m~~~v~~~l~~~g~~--~~~~i~~e~f 231 (232)
T cd06190 174 ----GWD-----GPTGFVH--EVVEATLGDR-LAEFEFYFAGPPPMVDAVQRMLMIEGVV--PFDQIHFDRF 231 (232)
T ss_pred ----Ccc-----CCcCcHH--HHHHhhccCC-ccccEEEEECCHHHHHHHHHHHHHhCCC--ChHheeeccc
Confidence 000 1113322 3343332221 1245799999999999999988775321 1335677877
No 20
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.93 E-value=6.8e-25 Score=232.39 Aligned_cols=225 Identities=17% Similarity=0.310 Sum_probs=164.6
Q ss_pred cEEEEEEEEecCCEEEEEEecCC--CCccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEec--CcchHHHHH
Q 002711 577 SVRILKVAVYPGNVLALQMSKPQ--GFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTL--GDWTSQLKS 651 (889)
Q Consensus 577 ~~~i~~v~~~~~~v~~l~~~~p~--~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~--G~wT~~L~~ 651 (889)
.++|.+++.+++++.++++..+. .+.|+||||+.|.+|... ++|||||+|.|.+ +.+.|+||.. |.+|..|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~ 79 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDD 79 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCCCCEEEEEEEECCCCchhhHHhh
Confidence 46788999999999999997544 578999999999998643 7899999999975 8899999997 667887765
Q ss_pred HHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhh
Q 002711 652 IFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKE 731 (889)
Q Consensus 652 ~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~ 731 (889)
.+ ++|+ ++.|.||||.+......++.+||||||+||||++|+++++....
T Consensus 80 ~l-------------------~~G~------~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~----- 129 (232)
T cd06212 80 GL-------------------AVGD------PVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG----- 129 (232)
T ss_pred cC-------------------CCCC------EEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC-----
Confidence 33 2566 89999999998754345679999999999999999999987541
Q ss_pred cccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHH
Q 002711 732 IEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQ 811 (889)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~ 811 (889)
..++++|+|++|+.+++ ++.++++++++.. .++.++..+++.... +
T Consensus 130 --------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~-~---------- 175 (232)
T cd06212 130 --------------------SDRPVRFFYGARTARDL-FYLEEIAALGEKI--PDFTFIPALSESPDD-E---------- 175 (232)
T ss_pred --------------------CCCcEEEEEeccchHHh-ccHHHHHHHHHhC--CCEEEEEEECCCCCC-C----------
Confidence 13679999999999987 5678888877643 356666555532110 0
Q ss_pred hhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 812 SIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 812 ~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
...+ ..|+ +.+.+.+..... ....||+|||++|++.+.+.+.+.+. ..-.+|.|.|
T Consensus 176 ----------~~~~-----~~g~--~~~~~~~~~~~~--~~~~v~~CGp~~~~~~v~~~l~~~G~---~~~~i~~e~f 231 (232)
T cd06212 176 ----------GWSG-----ETGL--VTEVVQRNEATL--AGCDVYLCGPPPMIDAALPVLEMSGV---PPDQIFYDKF 231 (232)
T ss_pred ----------CCcC-----Cccc--HHHHHHhhccCc--cCCEEEEECCHHHHHHHHHHHHHcCC---CHHHeeeccc
Confidence 0011 0122 223333322211 23469999999999999999987643 3456788877
No 21
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.93 E-value=8.5e-25 Score=231.05 Aligned_cols=221 Identities=19% Similarity=0.292 Sum_probs=165.7
Q ss_pred cEEEEEEEEecCCEEEEEEecCC--CCccCCccEEEEEEcCCCCCcccceeeeecCCCCceEEEEEec--CcchHHHHHH
Q 002711 577 SVRILKVAVYPGNVLALQMSKPQ--GFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTL--GDWTSQLKSI 652 (889)
Q Consensus 577 ~~~i~~v~~~~~~v~~l~~~~p~--~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~~l~l~Ir~~--G~wT~~L~~~ 652 (889)
.++|++++.+++++.+|+++.|. .+.|+||||+.|++|.. .++|||||+|.|.++.+.|+||.. |..|+.|.+.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ysi~s~~~~~~i~~~i~~~~~G~~s~~l~~~ 80 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGT--DETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLRDR 80 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCC--CcccccccccCCCCCeEEEEEEEcCCCcchhhHHhc
Confidence 46788999999999999999876 68899999999999864 368999999999888999999986 6688887653
Q ss_pred HhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhc
Q 002711 653 FAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEI 732 (889)
Q Consensus 653 ~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~ 732 (889)
+ ++|+ ++.|.||||.+..+ ...+.++|||||+||||++|++++++.+.
T Consensus 81 l-------------------~~G~------~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~------ 128 (228)
T cd06209 81 A-------------------QPGD------RLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG------ 128 (228)
T ss_pred c-------------------CCCC------EEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC------
Confidence 3 2576 79999999998543 23478999999999999999999987541
Q ss_pred ccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHh
Q 002711 733 EEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQS 812 (889)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~ 812 (889)
..++++|+|++|+.+++ .+.++++++.+.. ..++++.++|+... .
T Consensus 129 -------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~-~------------ 173 (228)
T cd06209 129 -------------------SAHPVHLVYGVTRDADL-VELDRLEALAERL--PGFSFRTVVADPDS-W------------ 173 (228)
T ss_pred -------------------CCCcEEEEEecCCHHHh-ccHHHHHHHHHhC--CCeEEEEEEcCCCc-c------------
Confidence 14679999999999886 5678888776654 35888877764211 0
Q ss_pred hhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 813 IHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 813 l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
.+. .|+ +.+.+.+.... ..+..||+|||++|++++++.+.+.. -..-.+|.|.|
T Consensus 174 -----------~~~-----~g~--v~~~~~~~~~~--~~~~~v~icGp~~m~~~~~~~l~~~G---~~~~~i~~E~F 227 (228)
T cd06209 174 -----------HPR-----KGY--VTDHLEAEDLN--DGDVDVYLCGPPPMVDAVRSWLDEQG---IEPANFYYEKF 227 (228)
T ss_pred -----------CCC-----cCC--ccHHHHHhhcc--CCCcEEEEeCCHHHHHHHHHHHHHcC---CCHHHEeeecc
Confidence 000 011 22333222111 12457999999999999999998753 33456777877
No 22
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.93 E-value=8.5e-25 Score=232.23 Aligned_cols=225 Identities=17% Similarity=0.299 Sum_probs=164.5
Q ss_pred ccEEEEEEEEecCCEEEEEEecCCC------CccCCccEEEEEEcCCCCCcccceeeeecCC-CCceEEEEEec--Ccch
Q 002711 576 KSVRILKVAVYPGNVLALQMSKPQG------FKYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRTL--GDWT 646 (889)
Q Consensus 576 ~~~~i~~v~~~~~~v~~l~~~~p~~------~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~-~~~l~l~Ir~~--G~wT 646 (889)
..++|++++.+++++..+++..|.+ +.|+||||+.|.+|.. .++|||||+|.|. ++.+.|+||.. |.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPNWDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred ceEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--ccceecccCCCCCCCCEEEEEEEEcCCCccc
Confidence 3567889999999999999998765 7899999999999853 3789999999987 67899999986 6678
Q ss_pred HHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHH
Q 002711 647 SQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNI 726 (889)
Q Consensus 647 ~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~ 726 (889)
..|.+.+ ++|+ ++.|.||||.+..+-..++.++|||||+||||++++++++....
T Consensus 80 ~~l~~~~-------------------~~Gd------~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~ 134 (236)
T cd06210 80 TYLETRA-------------------KVGQ------RLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG 134 (236)
T ss_pred hhhhhCc-------------------CCCC------EEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC
Confidence 7776523 2677 89999999997543334578999999999999999999986531
Q ss_pred hhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHH
Q 002711 727 KQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSAL 806 (889)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~ 806 (889)
...+++|+|++|+.+++ ++.++|.++++.. .+++++..+++..+..
T Consensus 135 -------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~~------ 180 (236)
T cd06210 135 -------------------------EPQEARLFFGVNTEAEL-FYLDELKRLADSL--PNLTVRICVWRPGGEW------ 180 (236)
T ss_pred -------------------------CCceEEEEEecCCHHHh-hhHHHHHHHHHhC--CCeEEEEEEcCCCCCc------
Confidence 13679999999999986 6788888887654 3577777665321000
Q ss_pred HHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEe
Q 002711 807 ITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHK 886 (889)
Q Consensus 807 ~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~ 886 (889)
.| ..|+ ..+.+.+..... .....||+|||++|++.+++.+++.+. ..-.+|.
T Consensus 181 -----------------~~-----~~g~--~~~~l~~~l~~~-~~~~~vyicGp~~m~~~~~~~l~~~G~---~~~~i~~ 232 (236)
T cd06210 181 -----------------EG-----YRGT--VVDALREDLASS-DAKPDIYLCGPPGMVDAAFAAAREAGV---PDEQVYL 232 (236)
T ss_pred -----------------CC-----ccCc--HHHHHHHhhccc-CCCcEEEEeCCHHHHHHHHHHHHHcCC---CHHHeee
Confidence 00 0122 122232221111 123469999999999999999987542 2335777
Q ss_pred eCC
Q 002711 887 ENF 889 (889)
Q Consensus 887 E~F 889 (889)
|.|
T Consensus 233 E~f 235 (236)
T cd06210 233 EKF 235 (236)
T ss_pred ccc
Confidence 876
No 23
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.93 E-value=1.7e-24 Score=230.55 Aligned_cols=230 Identities=18% Similarity=0.302 Sum_probs=169.5
Q ss_pred ccEEEEEEEEecCCEEEEEEecCCC----CccCCccEEEEEEcCCCCCcccceeeeecCCCCceEEEEEec--CcchHHH
Q 002711 576 KSVRILKVAVYPGNVLALQMSKPQG----FKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTL--GDWTSQL 649 (889)
Q Consensus 576 ~~~~i~~v~~~~~~v~~l~~~~p~~----~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~~l~l~Ir~~--G~wT~~L 649 (889)
+.++|.+++.+++++.++++..|.+ +.|+||||+.|++|..+...+|||||+|.|+++.+.|+||.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~~l~~~i~~~~~G~~s~~l 81 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNWA 81 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCCCcEEEEEEEcCCCccchhH
Confidence 4678999999999999999998765 589999999999986555689999999999888999999987 6677777
Q ss_pred HHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCC-CCCEEEEEEcCcchhhHHHHHHHHHHHHhh
Q 002711 650 KSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYK-DYDVLLLVGLGIGATPLISIIKDVLNNIKQ 728 (889)
Q Consensus 650 ~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~-~~~~vllVagGiGITP~lsil~~l~~~~~~ 728 (889)
.+.+ ++|+ .+.|.||+|.+..... .++.++|||||+||||+++++++++...
T Consensus 82 ~~~~-------------------~~G~------~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~-- 134 (241)
T cd06214 82 NDEL-------------------KAGD------TLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE-- 134 (241)
T ss_pred Hhcc-------------------CCCC------EEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC--
Confidence 5422 2566 7999999999764433 4789999999999999999999987541
Q ss_pred hhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHH
Q 002711 729 QKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALIT 808 (889)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~ 808 (889)
..++++++|++|+..++ +|.++++++.+... ..+.++.++|+.... .
T Consensus 135 -----------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~-~------- 181 (241)
T cd06214 135 -----------------------PASRVTLVYGNRTEASV-IFREELADLKARYP-DRLTVIHVLSREQGD-P------- 181 (241)
T ss_pred -----------------------CCCcEEEEEEeCCHHHh-hHHHHHHHHHHhCc-CceEEEEEecCCCCC-c-------
Confidence 14679999999999987 78888888865432 467776655532100 0
Q ss_pred HHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhh--CCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEe
Q 002711 809 MLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVK--HTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHK 886 (889)
Q Consensus 809 ~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~--~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~ 886 (889)
..+.||++... +.+.... .+.+...||+|||+.|++.+++.+.+... ..=.+|.
T Consensus 182 --------------------~~~~g~~~~~~-~~~~~~~~~~~~~~~~v~icGp~~mv~~v~~~l~~~G~---~~~~i~~ 237 (241)
T cd06214 182 --------------------DLLRGRLDAAK-LNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLELGV---PAERIHR 237 (241)
T ss_pred --------------------ccccCccCHHH-HHHhhhhhcccccCcEEEEECCHHHHHHHHHHHHHcCC---CHHHeec
Confidence 01235665322 2222211 12234679999999999999999887532 3345666
Q ss_pred eCC
Q 002711 887 ENF 889 (889)
Q Consensus 887 E~F 889 (889)
|.|
T Consensus 238 e~f 240 (241)
T cd06214 238 ELF 240 (241)
T ss_pred ccc
Confidence 766
No 24
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.93 E-value=8.6e-25 Score=230.23 Aligned_cols=220 Identities=16% Similarity=0.290 Sum_probs=161.5
Q ss_pred EEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEec--CcchHHHHHHHhhcc
Q 002711 581 LKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTL--GDWTSQLKSIFAKVC 657 (889)
Q Consensus 581 ~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~--G~wT~~L~~~~~~~~ 657 (889)
.++..+++++.++++..|..+.|+||||+.|.+|.... .+|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l---- 76 (224)
T cd06187 2 VSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDEL---- 76 (224)
T ss_pred eeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcC----
Confidence 56778889999999998888899999999999986542 6899999999875 7899999998 88998887633
Q ss_pred CCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccc
Q 002711 658 QPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGIT 737 (889)
Q Consensus 658 ~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~ 737 (889)
++|+ .+.|.||||.+......++.+||||||+||||++|+++++..+.
T Consensus 77 ---------------~~G~------~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~----------- 124 (224)
T cd06187 77 ---------------KVGD------RVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG----------- 124 (224)
T ss_pred ---------------ccCC------EEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC-----------
Confidence 2566 89999999997644334678999999999999999999987531
Q ss_pred cCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhccc
Q 002711 738 EDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAK 817 (889)
Q Consensus 738 ~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~ 817 (889)
..+++.++|++|+.+++ ++.++++++++.. ..+.++.++|+..+..
T Consensus 125 --------------~~~~v~l~~~~~~~~~~-~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~----------------- 170 (224)
T cd06187 125 --------------EPRPVHLFFGARTERDL-YDLEGLLALAARH--PWLRVVPVVSHEEGAW----------------- 170 (224)
T ss_pred --------------CCCCEEEEEecCChhhh-cChHHHHHHHHhC--CCeEEEEEeCCCCCcc-----------------
Confidence 14689999999999986 5677777776543 3566666655421100
Q ss_pred CCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 818 NGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 818 ~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
.|. +-.+.+.+.+... +.....||+|||++|++++++.+++.+. ..=.+|.|.|
T Consensus 171 ------~~~-------~g~~~~~~~~~~~--~~~~~~v~vcGp~~~~~~v~~~l~~~G~---~~~~i~~e~f 224 (224)
T cd06187 171 ------TGR-------RGLVTDVVGRDGP--DWADHDIYICGPPAMVDATVDALLARGA---PPERIHFDKF 224 (224)
T ss_pred ------CCC-------cccHHHHHHHhcc--ccccCEEEEECCHHHHHHHHHHHHHcCC---CHHHeeccCC
Confidence 000 1112222222211 1123579999999999999999987643 3445666776
No 25
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.93 E-value=1.4e-24 Score=230.91 Aligned_cols=227 Identities=17% Similarity=0.242 Sum_probs=166.9
Q ss_pred ccEEEEEEEEecCCEEEEEEecCCCC--ccCCccEEEEEEcCCCCCcccceeeeecCC-CCceEEEEEec--CcchHHHH
Q 002711 576 KSVRILKVAVYPGNVLALQMSKPQGF--KYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRTL--GDWTSQLK 650 (889)
Q Consensus 576 ~~~~i~~v~~~~~~v~~l~~~~p~~~--~~~pGQyv~l~~p~is~~e~HPFTIaSaP~-~~~l~l~Ir~~--G~wT~~L~ 650 (889)
...+|.+++.+++++..+++..|.+. .|+||||+.|.+|... ++|||||+|.|. ++.+.|+||.. |..|+.|.
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYE--GTRAFSIASSPSDAGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCC--CccccccCCCCCCCCEEEEEEEECCCCcchhhHh
Confidence 45788899999999999999987664 8999999999998642 689999999986 57899999997 77888886
Q ss_pred HHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhh
Q 002711 651 SIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQK 730 (889)
Q Consensus 651 ~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~ 730 (889)
+.+ ++|+ +|.|.||||.+.......+.+|+||||+||||++|++++++.+.
T Consensus 85 ~~l-------------------~~G~------~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~---- 135 (238)
T cd06211 85 KQL-------------------KEGD------ELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERG---- 135 (238)
T ss_pred hcC-------------------CCCC------EEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcC----
Confidence 432 2576 89999999998643334478999999999999999999987541
Q ss_pred hcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHH
Q 002711 731 EIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITML 810 (889)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~ 810 (889)
..++++|+|++|+.+++ +|.+++.++++.. .++.++..+++..++ +
T Consensus 136 ---------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~-~--------- 181 (238)
T cd06211 136 ---------------------DTRKITLFFGARTRAEL-YYLDEFEALEKDH--PNFKYVPALSREPPE-S--------- 181 (238)
T ss_pred ---------------------CCCcEEEEEecCChhhh-ccHHHHHHHHHhC--CCeEEEEEECCCCCC-c---------
Confidence 13679999999999986 7889898887643 346666555543110 0
Q ss_pred HhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 811 QSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 811 ~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
...| ..||. .+++.+..... .+...||+|||+.|++.+.+.+.+... ..=.+|.|.|
T Consensus 182 -----------~~~~-----~~g~v--~~~l~~~~~~~-~~~~~vyvCGp~~m~~~~~~~L~~~Gv---~~~~i~~e~F 238 (238)
T cd06211 182 -----------NWKG-----FTGFV--HDAAKKHFKND-FRGHKAYLCGPPPMIDACIKTLMQGRL---FERDIYYEKF 238 (238)
T ss_pred -----------Cccc-----ccCcH--HHHHHHhcccc-cccCEEEEECCHHHHHHHHHHHHHcCC---CHHHccccCC
Confidence 0011 11332 23444332211 123579999999999999999987643 2334688877
No 26
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.93 E-value=1.5e-24 Score=244.14 Aligned_cols=231 Identities=16% Similarity=0.238 Sum_probs=167.1
Q ss_pred ccEEEEEEEEecCCEEEEEEecCC----CCccCCccEEEEEEcCCCCCcccceeeeecCCCCceEEEEEecC--cchHHH
Q 002711 576 KSVRILKVAVYPGNVLALQMSKPQ----GFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTLG--DWTSQL 649 (889)
Q Consensus 576 ~~~~i~~v~~~~~~v~~l~~~~p~----~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~~l~l~Ir~~G--~wT~~L 649 (889)
+.++|.+++.+.+++.+|+|..|. .+.|+||||+.|.+|.-+...+|||||+|.|+++.++|+||..+ ..|..|
T Consensus 2 ~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~l~i~vk~~~~G~~S~~l 81 (352)
T TIGR02160 2 HRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWA 81 (352)
T ss_pred eEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCCCcEEEEEEEeCCCcchHHH
Confidence 567899999999999999999764 26899999999999744445689999999998889999999873 456666
Q ss_pred HHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCC--CCCEEEEEEcCcchhhHHHHHHHHHHHHh
Q 002711 650 KSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYK--DYDVLLLVGLGIGATPLISIIKDVLNNIK 727 (889)
Q Consensus 650 ~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~--~~~~vllVagGiGITP~lsil~~l~~~~~ 727 (889)
.+.+ ++|+ .+.|.||||.+..+.. ..+.+||||||+||||++||+++++.+.
T Consensus 82 ~~~l-------------------~~Gd------~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~- 135 (352)
T TIGR02160 82 NDEI-------------------RPGD------TLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE- 135 (352)
T ss_pred HhcC-------------------CCCC------EEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC-
Confidence 4322 4677 8999999999753322 2468999999999999999999987541
Q ss_pred hhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHH
Q 002711 728 QQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALI 807 (889)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~ 807 (889)
..++++|+|++|+.+++ +|.++|.++++... ..+.++..+++..+..
T Consensus 136 ------------------------~~~~v~l~~~~r~~~d~-~~~~el~~l~~~~~-~~~~~~~~~s~~~~~~------- 182 (352)
T TIGR02160 136 ------------------------PRSTFTLVYGNRRTASV-MFAEELADLKDKHP-QRFHLAHVLSREPREA------- 182 (352)
T ss_pred ------------------------CCceEEEEEEeCCHHHH-HHHHHHHHHHHhCc-CcEEEEEEecCCCcCc-------
Confidence 14679999999999986 78888888875432 3577776665421100
Q ss_pred HHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhC-CCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEe
Q 002711 808 TMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKH-TDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHK 886 (889)
Q Consensus 808 ~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~-~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~ 886 (889)
....||.+...+-+.+.... ......||+|||++|++.+++.+.+... ..-.+|.
T Consensus 183 ---------------------~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv---~~~~i~~ 238 (352)
T TIGR02160 183 ---------------------PLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGLGV---PAGRVHL 238 (352)
T ss_pred ---------------------ccccCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHcCC---CHHHEEE
Confidence 01236766433222221111 1223479999999999999999987643 3345666
Q ss_pred eCC
Q 002711 887 ENF 889 (889)
Q Consensus 887 E~F 889 (889)
|.|
T Consensus 239 E~F 241 (352)
T TIGR02160 239 ELF 241 (352)
T ss_pred Eec
Confidence 766
No 27
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.93 E-value=1.8e-24 Score=227.16 Aligned_cols=209 Identities=19% Similarity=0.321 Sum_probs=157.3
Q ss_pred EEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEec--CcchHHHHHHHhhccCC
Q 002711 583 VAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTL--GDWTSQLKSIFAKVCQP 659 (889)
Q Consensus 583 v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~--G~wT~~L~~~~~~~~~~ 659 (889)
++.+.+++..+++..|..+.|+||||+.|.+|......+|||||+|+|.+ +.++|+||.. |.+|+.|.+..
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~~------ 76 (223)
T cd00322 3 TEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDLK------ 76 (223)
T ss_pred eEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcCC------
Confidence 45667899999999887788999999999999755678999999999976 8999999999 99999887532
Q ss_pred CCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccC
Q 002711 660 PSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITED 739 (889)
Q Consensus 660 ~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~ 739 (889)
+|+ ++.|.||||.+......++.+++||||+||||++|+++++....
T Consensus 77 --------------~G~------~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~------------- 123 (223)
T cd00322 77 --------------PGD------EVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK------------- 123 (223)
T ss_pred --------------CCC------EEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC-------------
Confidence 566 89999999998544456789999999999999999999987541
Q ss_pred CCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCC
Q 002711 740 GGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNG 819 (889)
Q Consensus 740 ~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~ 819 (889)
..++++++|++|+.+++ +|.+++.++++.. .+++++.++++......
T Consensus 124 ------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~~~~~~~~~------------------ 170 (223)
T cd00322 124 ------------PGGEITLLYGARTPADL-LFLDELEELAKEG--PNFRLVLALSRESEAKL------------------ 170 (223)
T ss_pred ------------CCCcEEEEEecCCHHHh-hHHHHHHHHHHhC--CCeEEEEEecCCCCCCC------------------
Confidence 14679999999999875 7888888887633 46777776654311100
Q ss_pred CccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhh
Q 002711 820 LDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFS 875 (889)
Q Consensus 820 ~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 875 (889)
+ ..++......+..... ......||+|||++|++.+++.+.+.+
T Consensus 171 -----~-----~~~~~~~~~~~~~~~~--~~~~~~~yvCGp~~m~~~~~~~L~~~g 214 (223)
T cd00322 171 -----G-----PGGRIDREAEILALLP--DDSGALVYICGPPAMAKAVREALVSLG 214 (223)
T ss_pred -----c-----ccceeeHHHHHHhhcc--cccCCEEEEECCHHHHHHHHHHHHHcC
Confidence 0 0011111111111111 123457999999999999999988754
No 28
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.93 E-value=1.4e-24 Score=236.77 Aligned_cols=230 Identities=17% Similarity=0.336 Sum_probs=164.8
Q ss_pred ccEEEEEEEEecCCEEEEEEecCCC--CccCCccEEEEEEcCC-----------------------------CCCcccce
Q 002711 576 KSVRILKVAVYPGNVLALQMSKPQG--FKYTSGQYIFVNCAAV-----------------------------SQFQWHPF 624 (889)
Q Consensus 576 ~~~~i~~v~~~~~~v~~l~~~~p~~--~~~~pGQyv~l~~p~i-----------------------------s~~e~HPF 624 (889)
..++|.+++.+.+++.++++..|.+ +.|+||||+.|.+|.. ....+|||
T Consensus 10 ~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 89 (283)
T cd06188 10 WECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAY 89 (283)
T ss_pred EEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCcccccc
Confidence 4567888888999999999998775 7899999999999853 11235999
Q ss_pred eeeecCC-CCceEEEEEe-----------cCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCC
Q 002711 625 SITSAPG-DDYLSIHIRT-----------LGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGA 692 (889)
Q Consensus 625 TIaSaP~-~~~l~l~Ir~-----------~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~ 692 (889)
||+|+|. ++.+.|+||. .|..|+.|.+ +++|+ +|.|.||||.
T Consensus 90 Sias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~--------------------l~~Gd------~v~i~gP~G~ 143 (283)
T cd06188 90 SLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFN--------------------LKPGD------KVTASGPFGE 143 (283)
T ss_pred CcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhc--------------------CCCCC------EEEEECcccc
Confidence 9999996 5789999997 3445655543 34677 8999999999
Q ss_pred CCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHH
Q 002711 693 PAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFR 772 (889)
Q Consensus 693 ~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~ 772 (889)
+..+ ...+.+||||||+||||++||+++++.... ..++++|+|++|+.+++ +|.
T Consensus 144 f~l~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~------------------------~~~~v~l~~g~r~~~d~-~~~ 197 (283)
T cd06188 144 FFIK-DTDREMVFIGGGAGMAPLRSHIFHLLKTLK------------------------SKRKISFWYGARSLKEL-FYQ 197 (283)
T ss_pred cccc-CCCCcEEEEEecccHhHHHHHHHHHHhcCC------------------------CCceEEEEEecCCHHHh-hHH
Confidence 8754 345689999999999999999999865311 13689999999999886 688
Q ss_pred HHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhC-CCC
Q 002711 773 GVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKH-TDE 851 (889)
Q Consensus 773 ~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~-~~~ 851 (889)
++|.+++... .++.++..+|+... .+. ..| ..||.+ +.+.+...... ...
T Consensus 198 ~el~~l~~~~--~~~~~~~~~s~~~~-~~~--------------------~~~-----~~G~v~-~~~~~~~~~~~~~~~ 248 (283)
T cd06188 198 EEFEALEKEF--PNFKYHPVLSEPQP-EDN--------------------WDG-----YTGFIH-QVLLENYLKKHPAPE 248 (283)
T ss_pred HHHHHHHHHC--CCeEEEEEECCCCc-cCC--------------------CCC-----cceeec-HHHHHHHhccCCCCC
Confidence 8888887643 35666665554210 000 001 113332 22333322222 123
Q ss_pred eEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 852 RVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 852 ~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
+..||+|||++|++.+++.+++.+. ..-.+|.|.|
T Consensus 249 ~~~vyiCGP~~m~~~~~~~l~~~Gv---~~~~i~~e~F 283 (283)
T cd06188 249 DIEFYLCGPPPMNSAVIKMLDDLGV---PRENIAFDDF 283 (283)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCC---CHHHeeccCC
Confidence 4679999999999999999987643 3556788887
No 29
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.92 E-value=4.6e-24 Score=238.02 Aligned_cols=225 Identities=18% Similarity=0.275 Sum_probs=165.1
Q ss_pred ccEEEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEec--CcchHHHHHH
Q 002711 576 KSVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTL--GDWTSQLKSI 652 (889)
Q Consensus 576 ~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~--G~wT~~L~~~ 652 (889)
+.++|.++..+.+++..+++..+..+.|+||||+.|.+|.. ...+|||||+|+|.+ +.+.|+||.. |..|+.|.+.
T Consensus 10 ~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 10 NRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhc
Confidence 35788889999999999999877778999999999999853 235799999999975 6799999987 5667776543
Q ss_pred HhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhc
Q 002711 653 FAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEI 732 (889)
Q Consensus 653 ~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~ 732 (889)
+ ++|+ +|.|.||+|.+..+....+.+|||||||||||++||+++++.+.
T Consensus 89 l-------------------~~Gd------~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~------ 137 (332)
T PRK10684 89 V-------------------KRGD------YLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR------ 137 (332)
T ss_pred C-------------------CCCC------EEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC------
Confidence 3 3677 89999999998644334568999999999999999999986531
Q ss_pred ccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHh
Q 002711 733 EEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQS 812 (889)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~ 812 (889)
..++++|+|++|+.+++ .|.++|.++++... .+.++.+.++.. .
T Consensus 138 -------------------~~~~v~l~y~~r~~~~~-~~~~el~~l~~~~~--~~~~~~~~~~~~---~----------- 181 (332)
T PRK10684 138 -------------------PQADVQVIFNVRTPQDV-IFADEWRQLKQRYP--QLNLTLVAENNA---T----------- 181 (332)
T ss_pred -------------------CCCCEEEEEeCCChHHh-hhHHHHHHHHHHCC--CeEEEEEeccCC---C-----------
Confidence 14689999999999987 58888888876543 455555433210 0
Q ss_pred hhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 813 IHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 813 l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
.| ...||.+.. ++.+..... ....||+|||++|++.+++.+.+.+. ..-.+|.|.|
T Consensus 182 -----------~~----~~~grl~~~-~l~~~~~~~--~~~~vyiCGP~~m~~~v~~~l~~~Gv---~~~~i~~E~F 237 (332)
T PRK10684 182 -----------EG----FIAGRLTRE-LLQQAVPDL--ASRTVMTCGPAPYMDWVEQEVKALGV---TADRFFKEKF 237 (332)
T ss_pred -----------CC----ccccccCHH-HHHHhcccc--cCCEEEEECCHHHHHHHHHHHHHcCC---CHHHeEeecc
Confidence 00 123676643 333322111 12469999999999999998877532 3445777877
No 30
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.92 E-value=3.7e-24 Score=224.58 Aligned_cols=205 Identities=21% Similarity=0.371 Sum_probs=154.1
Q ss_pred cEEEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCC-CCcccceeeeecCCCCceEEEEEec---CcchHHHHHH
Q 002711 577 SVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVS-QFQWHPFSITSAPGDDYLSIHIRTL---GDWTSQLKSI 652 (889)
Q Consensus 577 ~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is-~~e~HPFTIaSaP~~~~l~l~Ir~~---G~wT~~L~~~ 652 (889)
.++|++++.+++++.++++..|..+.|+||||+.|.++..+ ..++|||||+|.|.++.+.|+||.. |+.|+.|.++
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l 81 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRL 81 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhC
Confidence 46788999999999999999988899999999999997643 3478999999999889999999986 6678877532
Q ss_pred HhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhc
Q 002711 653 FAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEI 732 (889)
Q Consensus 653 ~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~ 732 (889)
++|+ .+.|.||||.+.. .+.+||||||+||||++|++++++...
T Consensus 82 --------------------~~G~------~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~------ 125 (218)
T cd06196 82 --------------------QPGD------TLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKG------ 125 (218)
T ss_pred --------------------CCCC------EEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCC------
Confidence 2677 8999999999642 257899999999999999999987531
Q ss_pred ccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHh
Q 002711 733 EEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQS 812 (889)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~ 812 (889)
..++++++|++|+.+++ ++.++++++.. +.++.++|.....
T Consensus 126 -------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~------~~~~~~~s~~~~~------------- 166 (218)
T cd06196 126 -------------------KLEGNTLIFANKTEKDI-ILKDELEKMLG------LKFINVVTDEKDP------------- 166 (218)
T ss_pred -------------------CCceEEEEEecCCHHHH-hhHHHHHHhhc------ceEEEEEcCCCCC-------------
Confidence 14678999999999886 67787777632 3444444431100
Q ss_pred hhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhc
Q 002711 813 IHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSR 876 (889)
Q Consensus 813 l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 876 (889)
....||.+- +++++.... ....||+|||++|++++++.+.+...
T Consensus 167 ----------------~~~~g~~~~-~~l~~~~~~---~~~~vyiCGp~~m~~~~~~~l~~~G~ 210 (218)
T cd06196 167 ----------------GYAHGRIDK-AFLKQHVTD---FNQHFYVCGPPPMEEAINGALKELGV 210 (218)
T ss_pred ----------------CeeeeEECH-HHHHHhcCC---CCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 011255542 344443221 12469999999999999999987643
No 31
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.92 E-value=5.3e-24 Score=238.38 Aligned_cols=227 Identities=21% Similarity=0.340 Sum_probs=164.8
Q ss_pred ccccEEEEEEEEecCCEEEEEEecC--CCCccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEec--CcchHH
Q 002711 574 GYKSVRILKVAVYPGNVLALQMSKP--QGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTL--GDWTSQ 648 (889)
Q Consensus 574 ~~~~~~i~~v~~~~~~v~~l~~~~p--~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~--G~wT~~ 648 (889)
....++|++++.+++++..|++..| ..+.|+||||+.|.+|.. ++|||||+|.|++ +.++|+||.. |.+|+.
T Consensus 101 ~~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 177 (339)
T PRK07609 101 KKLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHSGGPLELHIRHMPGGVFTDH 177 (339)
T ss_pred eEEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCCCCEEEEEEEecCCCccHHH
Confidence 3356889999999999999999876 357899999999999863 6899999999975 7999999976 667877
Q ss_pred HHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhh
Q 002711 649 LKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQ 728 (889)
Q Consensus 649 L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~ 728 (889)
|.+.+ ++|+ .+.|.||||.+..+....+.+||||||+||||++|++++++...
T Consensus 178 l~~~l-------------------~~G~------~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~-- 230 (339)
T PRK07609 178 VFGAL-------------------KERD------ILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG-- 230 (339)
T ss_pred HHHhc-------------------cCCC------EEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC--
Confidence 76543 2576 89999999998754345678999999999999999999987531
Q ss_pred hhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHH
Q 002711 729 QKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALIT 808 (889)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~ 808 (889)
..++++|+|++|+.+++ .+.+++.++++.. ..+.++..+++... .+
T Consensus 231 -----------------------~~~~i~l~~g~r~~~dl-~~~e~l~~~~~~~--~~~~~~~~~s~~~~-~~------- 276 (339)
T PRK07609 231 -----------------------IQRPVTLYWGARRPEDL-YLSALAEQWAEEL--PNFRYVPVVSDALD-DD------- 276 (339)
T ss_pred -----------------------CCCcEEEEEecCChHHh-ccHHHHHHHHHhC--CCeEEEEEecCCCC-CC-------
Confidence 14679999999999986 5677777776543 35777766664311 00
Q ss_pred HHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeC
Q 002711 809 MLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKEN 888 (889)
Q Consensus 809 ~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~ 888 (889)
...| +.|+.+ +.+++.+. ......||+|||++|++.+++.+.+.+. ..-.+|.|.
T Consensus 277 -------------~~~g-----~~G~v~-~~~~~~~~---~~~~~~vy~CGp~~m~~~~~~~l~~~G~---~~~~i~~e~ 331 (339)
T PRK07609 277 -------------AWTG-----RTGFVH-QAVLEDFP---DLSGHQVYACGSPVMVYAARDDFVAAGL---PAEEFFADA 331 (339)
T ss_pred -------------CccC-----ccCcHH-HHHHhhcc---cccCCEEEEECCHHHHHHHHHHHHHcCC---CHHHeEEee
Confidence 0011 113321 11222211 1123579999999999999998887542 344567777
Q ss_pred C
Q 002711 889 F 889 (889)
Q Consensus 889 F 889 (889)
|
T Consensus 332 F 332 (339)
T PRK07609 332 F 332 (339)
T ss_pred c
Confidence 6
No 32
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.92 E-value=1.4e-23 Score=240.22 Aligned_cols=233 Identities=18% Similarity=0.293 Sum_probs=170.9
Q ss_pred ccccEEEEEEEEecCCEEEEEEecCC---CCccCCccEEEEEEcCCC--CCcccceeeeecCCCCceEEEEEec--Ccch
Q 002711 574 GYKSVRILKVAVYPGNVLALQMSKPQ---GFKYTSGQYIFVNCAAVS--QFQWHPFSITSAPGDDYLSIHIRTL--GDWT 646 (889)
Q Consensus 574 ~~~~~~i~~v~~~~~~v~~l~~~~p~---~~~~~pGQyv~l~~p~is--~~e~HPFTIaSaP~~~~l~l~Ir~~--G~wT 646 (889)
.+..++|++++.+.+++..+++..+. .+.|+||||+.|.++..+ ..+||||||+|+|+++.+.|+||.. |..|
T Consensus 153 ~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~~~~G~~S 232 (399)
T PRK13289 153 GWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKREAGGKVS 232 (399)
T ss_pred CcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEECCCCeeh
Confidence 45667899999999999999998764 268999999999996432 3467999999999888999999988 8888
Q ss_pred HHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHH
Q 002711 647 SQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNI 726 (889)
Q Consensus 647 ~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~ 726 (889)
..|.+.+ ++|+ .|.|.||||.+..+-...+.+|||||||||||++|++++++...
T Consensus 233 ~~L~~~l-------------------~~Gd------~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~ 287 (399)
T PRK13289 233 NYLHDHV-------------------NVGD------VLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ 287 (399)
T ss_pred HHHhhcC-------------------CCCC------EEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC
Confidence 8886533 3677 89999999998654334578999999999999999999987541
Q ss_pred hhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHH
Q 002711 727 KQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSAL 806 (889)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~ 806 (889)
..++++|+|++|+.+++ .|.++|.++++.. ..++++.++++.... +
T Consensus 288 -------------------------~~~~v~l~~~~r~~~~~-~~~~eL~~l~~~~--~~~~~~~~~s~~~~~-~----- 333 (399)
T PRK13289 288 -------------------------PKRPVHFIHAARNGGVH-AFRDEVEALAARH--PNLKAHTWYREPTEQ-D----- 333 (399)
T ss_pred -------------------------CCCCEEEEEEeCChhhc-hHHHHHHHHHHhC--CCcEEEEEECCCccc-c-----
Confidence 24689999999999986 6889898887643 357777666542110 0
Q ss_pred HHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEe
Q 002711 807 ITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHK 886 (889)
Q Consensus 807 ~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~ 886 (889)
..+. ...+.||.+.. ++.+... .....||+|||++|++.+++.+.+.+. ..=.+|.
T Consensus 334 ----------------~~~~-~~~~~g~i~~~-~l~~~~~---~~~~~vyiCGp~~m~~~v~~~L~~~Gv---~~~~I~~ 389 (399)
T PRK13289 334 ----------------RAGE-DFDSEGLMDLE-WLEAWLP---DPDADFYFCGPVPFMQFVAKQLLELGV---PEERIHY 389 (399)
T ss_pred ----------------ccCC-cccccCcccHH-HHHhhCC---CCCCEEEEECCHHHHHHHHHHHHHcCC---CHHHeee
Confidence 0000 00123666633 3333221 124579999999999999999987643 2335677
Q ss_pred eCC
Q 002711 887 ENF 889 (889)
Q Consensus 887 E~F 889 (889)
|.|
T Consensus 390 E~F 392 (399)
T PRK13289 390 EFF 392 (399)
T ss_pred ecc
Confidence 776
No 33
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.91 E-value=1.1e-23 Score=235.46 Aligned_cols=224 Identities=17% Similarity=0.305 Sum_probs=163.4
Q ss_pred cccEEEEEEEEecCCEEEEEEecC---CCCccCCccEEEEEEcCCCCCcccceeeeecCC-CCceEEEEEec--CcchHH
Q 002711 575 YKSVRILKVAVYPGNVLALQMSKP---QGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRTL--GDWTSQ 648 (889)
Q Consensus 575 ~~~~~i~~v~~~~~~v~~l~~~~p---~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~-~~~l~l~Ir~~--G~wT~~ 648 (889)
...++|++++.+.+++..|++..+ +.+.|+||||+.|.+|.. -.+|||||+|.|. ++.+.|+||.. |..|+.
T Consensus 106 ~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 183 (340)
T PRK11872 106 KISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGT--DDWRSYSFANRPNATNQLQFLIRLLPDGVMSNY 183 (340)
T ss_pred eeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCC--CceeecccCCCCCCCCeEEEEEEECCCCcchhh
Confidence 345789999999999999999876 468899999999999864 3589999999996 57899999986 446777
Q ss_pred HHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhh
Q 002711 649 LKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQ 728 (889)
Q Consensus 649 L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~ 728 (889)
|.+.+ ++|+ .|.|.||||.+..+ ...+.+||||||+||||++|++++++...
T Consensus 184 L~~~l-------------------~~G~------~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~-- 235 (340)
T PRK11872 184 LRERC-------------------QVGD------EILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQG-- 235 (340)
T ss_pred HhhCC-------------------CCCC------EEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcC--
Confidence 75432 3677 89999999998643 23468999999999999999999986531
Q ss_pred hhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHH
Q 002711 729 QKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALIT 808 (889)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~ 808 (889)
..++++|+|++|+.+++ .|.++|.++++.. .+++++..+++..+.
T Consensus 236 -----------------------~~~~v~l~~g~r~~~dl-~~~~el~~~~~~~--~~~~~~~~~s~~~~~--------- 280 (340)
T PRK11872 236 -----------------------CSPPVHLYYGVRHAADL-CELQRLAAYAERL--PNFRYHPVVSKASAD--------- 280 (340)
T ss_pred -----------------------CCCcEEEEEecCChHHh-ccHHHHHHHHHHC--CCcEEEEEEeCCCCc---------
Confidence 13579999999999987 5788888876644 357777666542110
Q ss_pred HHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeC
Q 002711 809 MLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKEN 888 (889)
Q Consensus 809 ~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~ 888 (889)
..| ..|+.. +.+.+... ......||+||||+|++.+++.+.+.. -..-.+|.|.
T Consensus 281 --------------~~g-----~~g~v~--~~l~~~~l--~~~~~~vy~CGp~~mv~~~~~~L~~~G---v~~~~i~~E~ 334 (340)
T PRK11872 281 --------------WQG-----KRGYIH--EHFDKAQL--RDQAFDMYLCGPPPMVEAVKQWLDEQA---LENYRLYYEK 334 (340)
T ss_pred --------------CCC-----ceeecc--HHHHHhhc--CcCCCEEEEeCCHHHHHHHHHHHHHcC---CCHHHEEEee
Confidence 011 112322 22221100 112246999999999999999998754 3345677777
Q ss_pred C
Q 002711 889 F 889 (889)
Q Consensus 889 F 889 (889)
|
T Consensus 335 F 335 (340)
T PRK11872 335 F 335 (340)
T ss_pred e
Confidence 6
No 34
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.91 E-value=2.4e-24 Score=213.85 Aligned_cols=153 Identities=29% Similarity=0.562 Sum_probs=97.8
Q ss_pred CCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHH
Q 002711 700 YDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVA 779 (889)
Q Consensus 700 ~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~ 779 (889)
|++|||||||+||||++|+++++++..++.. ...++|+|+|++|+.++++||.++|+++.
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~--------------------~~~~~i~lvW~vR~~~~l~w~~~~l~~l~ 60 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRGS--------------------SRTRRIKLVWVVRDADELEWFSPELNELL 60 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-------------------------EEEEEEEES-TTTTHHHHHHHHHHH
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhcccc--------------------ccccceEEEEeeCchhhhhhhhHHHHHHH
Confidence 7899999999999999999999998866321 24789999999999999999999999887
Q ss_pred hhcCCCcEEEEEeeeccccCCChhhHHHHHHHh--hhcccCCCccccCCc-cccccCCCCHHHHHHHHHhhCCCCeEEEE
Q 002711 780 EYDQDGVIELHNYCTSVYEEGDARSALITMLQS--IHHAKNGLDIVSGTR-VKTHFARPNWRTVFKHVAVKHTDERVGVF 856 (889)
Q Consensus 780 ~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~--l~~~~~~~d~~sg~~-~~~~~GRPd~~~v~~~~~~~~~~~~v~V~ 856 (889)
+......+++++|+|+.....+.......+... ......++|..+..+ +.+++||||+++++++.+.....++++|+
T Consensus 61 ~~~~~~~~~~~iyvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~ 140 (156)
T PF08030_consen 61 ELDRLGNVEVHIYVTRESSAPSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVF 140 (156)
T ss_dssp HHHHHTSEEEEEEETT-------------------------------------EEES---HHHHHHHHHHHSTT-EEEEE
T ss_pred HHhccccceEEEEEcCCcccccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 766546899999999977655433322222111 111123456666665 78999999999999999777777899999
Q ss_pred EeCChhHHHHHHHHHH
Q 002711 857 YCGAPGLTGELRRLSQ 872 (889)
Q Consensus 857 ~CGP~~m~~~vr~~~~ 872 (889)
+|||++|++++|++|+
T Consensus 141 ~CGP~~m~~~vr~~v~ 156 (156)
T PF08030_consen 141 VCGPPSMVDDVRNAVN 156 (156)
T ss_dssp EES-HHHHHHHHHHH-
T ss_pred EcCcHHHHHHHHHHhC
Confidence 9999999999999884
No 35
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.91 E-value=1.9e-23 Score=224.23 Aligned_cols=207 Identities=20% Similarity=0.331 Sum_probs=150.3
Q ss_pred EEEEEecCCEEEEEEecCC----CCccCCccEEEEEEcCCCCCcccceeeeecCC-CCceEEEEEecCcchHHHHHHHhh
Q 002711 581 LKVAVYPGNVLALQMSKPQ----GFKYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRTLGDWTSQLKSIFAK 655 (889)
Q Consensus 581 ~~v~~~~~~v~~l~~~~p~----~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~-~~~l~l~Ir~~G~wT~~L~~~~~~ 655 (889)
.+++.+++++..+++..+. .++|+||||+.|.+|... .|||||+|+|. ++.++|+||..|.+|+.|.+ .
T Consensus 2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~-l-- 75 (253)
T cd06221 2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRRVGRVTEALHE-L-- 75 (253)
T ss_pred ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEeCChhhHHHHc-C--
Confidence 4567788877777666543 388999999999998653 39999999997 67899999999999988753 2
Q ss_pred ccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCC-CCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhccc
Q 002711 656 VCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPA-QDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEE 734 (889)
Q Consensus 656 ~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~-~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~ 734 (889)
++|+ ++.|.||||... .+...++.+|+||||+||||++|++++++....
T Consensus 76 -----------------~~G~------~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~------- 125 (253)
T cd06221 76 -----------------KPGD------TVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE------- 125 (253)
T ss_pred -----------------CCCC------EEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccc-------
Confidence 2566 899999999953 222256799999999999999999999876411
Q ss_pred ccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhh
Q 002711 735 GITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIH 814 (889)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~ 814 (889)
..++++|+|++|+.+++ ++.++|.++++. .++.++.++++..+..
T Consensus 126 -----------------~~~~i~Li~~~r~~~~~-~~~~~L~~l~~~---~~~~~~~~~s~~~~~~-------------- 170 (253)
T cd06221 126 -----------------DYGKVTLLYGARTPEDL-LFKEELKEWAKR---SDVEVILTVDRAEEGW-------------- 170 (253)
T ss_pred -----------------cCCcEEEEEecCChHHc-chHHHHHHHHhc---CCeEEEEEeCCCCCCc--------------
Confidence 14689999999999987 678888887754 3566666555321100
Q ss_pred cccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhc
Q 002711 815 HAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSR 876 (889)
Q Consensus 815 ~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 876 (889)
.+ +.|+.+ +.+.+.... + ....||+|||++|++.+++.+.+.+.
T Consensus 171 ---------~~-----~~g~v~--~~l~~~~~~-~-~~~~vyicGp~~mv~~~~~~L~~~Gv 214 (253)
T cd06221 171 ---------TG-----NVGLVT--DLLPELTLD-P-DNTVAIVCGPPIMMRFVAKELLKLGV 214 (253)
T ss_pred ---------cC-----Cccccc--hhHHhcCCC-c-CCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 00 113322 233322211 1 24579999999999999999987653
No 36
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.91 E-value=5.1e-23 Score=220.51 Aligned_cols=148 Identities=23% Similarity=0.346 Sum_probs=123.8
Q ss_pred cccEEEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCCCCceEEEEEecCcchHHHHHHHh
Q 002711 575 YKSVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTLGDWTSQLKSIFA 654 (889)
Q Consensus 575 ~~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~~l~l~Ir~~G~wT~~L~~~~~ 654 (889)
++.++|++++.+++++.++++..|..+.|+||||+.|.+|....+.+|||||+|.| ++.+.|+||..|.+|+.|.++
T Consensus 4 ~~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~l~l~Vk~~G~~t~~l~~l-- 80 (250)
T PRK00054 4 PENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID-KNEITILYRKVGEGTKKLSKL-- 80 (250)
T ss_pred ceEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-CCEEEEEEEEcChHHHHHhcC--
Confidence 45678999999999999999998777899999999999997766789999999999 889999999999999877532
Q ss_pred hccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhccc
Q 002711 655 KVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEE 734 (889)
Q Consensus 655 ~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~ 734 (889)
++|+ +|.|.||||.+...-...+.+++||||+||||++|+++++...
T Consensus 81 ------------------~~G~------~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~--------- 127 (250)
T PRK00054 81 ------------------KEGD------ELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKK--------- 127 (250)
T ss_pred ------------------CCCC------EEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHc---------
Confidence 2576 8999999998432212567899999999999999999998632
Q ss_pred ccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHH
Q 002711 735 GITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNE 777 (889)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~e 777 (889)
..+++++|.+|+.+++ ++.++|.+
T Consensus 128 ------------------~~~v~l~~~~r~~~d~-~~~~el~~ 151 (250)
T PRK00054 128 ------------------GVEVTTVLGARTKDEV-IFEEEFAK 151 (250)
T ss_pred ------------------CCcEEEEEEcCCHHHh-hhHHHHHh
Confidence 2468999999999986 56666665
No 37
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.91 E-value=3.1e-23 Score=219.78 Aligned_cols=217 Identities=17% Similarity=0.290 Sum_probs=160.1
Q ss_pred EEEEEEEecCCEEEEEEecCC---CCccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEec--CcchHHHHHH
Q 002711 579 RILKVAVYPGNVLALQMSKPQ---GFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTL--GDWTSQLKSI 652 (889)
Q Consensus 579 ~i~~v~~~~~~v~~l~~~~p~---~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~--G~wT~~L~~~ 652 (889)
+|.+++.+++++..+++..|. .+.++||||+.|.+|..+....|||||+|.|.+ +.+.|+||.. |..|+.|.+.
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~~ 81 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHSL 81 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhcC
Confidence 567888899999999998875 378999999999999766668999999999864 5799999986 7778777531
Q ss_pred HhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCC-CEEEEEEcCcchhhHHHHHHHHHHHHhhhhh
Q 002711 653 FAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDY-DVLLLVGLGIGATPLISIIKDVLNNIKQQKE 731 (889)
Q Consensus 653 ~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~-~~vllVagGiGITP~lsil~~l~~~~~~~~~ 731 (889)
++|+ ++.|.||||.+..+.... +.+||||||+||||+++++++++.+..
T Consensus 82 --------------------~~G~------~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~---- 131 (234)
T cd06183 82 --------------------KPGD------TVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE---- 131 (234)
T ss_pred --------------------CCCC------EEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC----
Confidence 2566 899999999975433333 789999999999999999999865310
Q ss_pred cccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHH
Q 002711 732 IEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQ 811 (889)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~ 811 (889)
..++|+++|++|+.+++ ++.++|+++.+.. ...++++.++|+..+..
T Consensus 132 --------------------~~~~i~l~~~~r~~~~~-~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~----------- 178 (234)
T cd06183 132 --------------------DKTKISLLYANRTEEDI-LLREELDELAKKH-PDRFKVHYVLSRPPEGW----------- 178 (234)
T ss_pred --------------------cCcEEEEEEecCCHHHh-hhHHHHHHHHHhC-cccEEEEEEEcCCCcCC-----------
Confidence 24789999999999886 7888888876642 24677777666421100
Q ss_pred hhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHH-HHHHHHHhhhc
Q 002711 812 SIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTG-ELRRLSQDFSR 876 (889)
Q Consensus 812 ~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~-~vr~~~~~~~~ 876 (889)
..+.||.+. .+++......+.....||+|||++|++ ++++.+.+.+.
T Consensus 179 -----------------~~~~g~~~~-~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~~l~~~G~ 226 (234)
T cd06183 179 -----------------KGGVGFITK-EMIKEHLPPPPSEDTLVLVCGPPPMIEGAVKGLLKELGY 226 (234)
T ss_pred -----------------ccccceECH-HHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHHcCC
Confidence 112255542 223332211012346899999999999 99999987543
No 38
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.91 E-value=4e-23 Score=220.89 Aligned_cols=215 Identities=16% Similarity=0.274 Sum_probs=154.3
Q ss_pred cccEEEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCCCCceEEEEEec--CcchHHHHHH
Q 002711 575 YKSVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTL--GDWTSQLKSI 652 (889)
Q Consensus 575 ~~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~~l~l~Ir~~--G~wT~~L~~~ 652 (889)
|..++|.+++.+.+++.++++..|. ..|+||||+.|.++......+|||||+|+|+++.++++||.. |..|+.|.+
T Consensus 4 ~~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~L~~- 81 (248)
T PRK10926 4 WVTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPRLAA- 81 (248)
T ss_pred cEEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChHHHh-
Confidence 5678899999999999999998763 378999999999964344457999999999888999999986 778887753
Q ss_pred HhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCC-CCCCC-CCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhh
Q 002711 653 FAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGA-PAQDY-KDYDVLLLVGLGIGATPLISIIKDVLNNIKQQK 730 (889)
Q Consensus 653 ~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~-~~~~~-~~~~~vllVagGiGITP~lsil~~l~~~~~~~~ 730 (889)
+ ++|+ +|.|.||+|. +..+- ...+.++||||||||||++|+++++....
T Consensus 82 l-------------------~~Gd------~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~---- 132 (248)
T PRK10926 82 L-------------------KPGD------EVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE---- 132 (248)
T ss_pred C-------------------CCCC------EEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC----
Confidence 2 3677 8999998844 33221 13368999999999999999999875321
Q ss_pred hcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHH
Q 002711 731 EIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITML 810 (889)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~ 810 (889)
..++++|+|++|+.+++ .|.++|+++++... ..+.++..+++....+
T Consensus 133 ---------------------~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~~-~~~~v~~~~s~~~~~~---------- 179 (248)
T PRK10926 133 ---------------------RFKNLVLVHAARYAADL-SYLPLMQELEQRYE-GKLRIQTVVSRETAPG---------- 179 (248)
T ss_pred ---------------------CCCcEEEEEeCCcHHHH-HHHHHHHHHHHhCc-CCEEEEEEECCCCCCC----------
Confidence 14679999999999886 68888888866532 3567766665421000
Q ss_pred HhhhcccCCCccccCCccccccCCCCHHHHH-----HHHHhh-CCCCeEEEEEeCChhHHHHHHHHHHhh
Q 002711 811 QSIHHAKNGLDIVSGTRVKTHFARPNWRTVF-----KHVAVK-HTDERVGVFYCGAPGLTGELRRLSQDF 874 (889)
Q Consensus 811 ~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~-----~~~~~~-~~~~~v~V~~CGP~~m~~~vr~~~~~~ 874 (889)
...||.+ +++ .+.... .......||+|||++|++.+++.+.+.
T Consensus 180 -------------------~~~G~v~--~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 180 -------------------SLTGRVP--ALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQQLLKET 228 (248)
T ss_pred -------------------CcCCccc--hhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHHHHHHHh
Confidence 0013322 111 111111 111235799999999999999998764
No 39
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.91 E-value=4.2e-23 Score=220.55 Aligned_cols=209 Identities=18% Similarity=0.284 Sum_probs=152.9
Q ss_pred EEEEEecCCEEEEEEecCC-CCccCCccEEEEEEcC-CCCCcccceeeeecC-CCCceEEEEEecCcchHHHHHHHhhcc
Q 002711 581 LKVAVYPGNVLALQMSKPQ-GFKYTSGQYIFVNCAA-VSQFQWHPFSITSAP-GDDYLSIHIRTLGDWTSQLKSIFAKVC 657 (889)
Q Consensus 581 ~~v~~~~~~v~~l~~~~p~-~~~~~pGQyv~l~~p~-is~~e~HPFTIaSaP-~~~~l~l~Ir~~G~wT~~L~~~~~~~~ 657 (889)
.+++.+.+++.+|++..|. .+.|+||||+.|.+|. ..++.+|||||+|.| +++.++|+||..|.+|+.|.++
T Consensus 2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l----- 76 (246)
T cd06218 2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVVGKGTRLLSEL----- 76 (246)
T ss_pred cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEECcchHHHhcC-----
Confidence 4577888999999999887 6789999999999986 456789999999988 4789999999999999877431
Q ss_pred CCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccc
Q 002711 658 QPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGIT 737 (889)
Q Consensus 658 ~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~ 737 (889)
++|+ +|.|.||||.........+.++|||||+||||++|+++++...
T Consensus 77 ---------------~~Gd------~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~------------ 123 (246)
T cd06218 77 ---------------KAGD------ELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER------------ 123 (246)
T ss_pred ---------------CCCC------EEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc------------
Confidence 2576 8999999997432223467999999999999999999987541
Q ss_pred cCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhccc
Q 002711 738 EDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAK 817 (889)
Q Consensus 738 ~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~ 817 (889)
.++++++|++|+.+++ .|.++|.++.. . ++. .+.. +.
T Consensus 124 ---------------~~~v~l~~~~r~~~d~-~~~~eL~~l~~-----~--~~~-~~~~---~~---------------- 160 (246)
T cd06218 124 ---------------GIKVTVLLGFRSADDL-FLVEEFEALGA-----E--VYV-ATDD---GS---------------- 160 (246)
T ss_pred ---------------CCceEEEEEccchhhh-hhHHHHHhhCC-----c--EEE-EcCC---CC----------------
Confidence 3579999999999985 56777766531 1 221 1110 00
Q ss_pred CCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 818 NGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 818 ~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
.+ .+..+.+.+.+..... ....||+|||++|++++++.+.+.+ ....++-|++
T Consensus 161 ------~~-------~~g~v~~~l~~~~~~~--~~~~vyiCGp~~mv~~~~~~L~~~G----v~~~~~~~~~ 213 (246)
T cd06218 161 ------AG-------TKGFVTDLLKELLAEA--RPDVVYACGPEPMLKAVAELAAERG----VPCQVSLEER 213 (246)
T ss_pred ------CC-------cceehHHHHHHHhhcc--CCCEEEEECCHHHHHHHHHHHHhcC----CCEEEEeccc
Confidence 00 0112334444433321 2358999999999999999998753 3466777764
No 40
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.91 E-value=5.9e-23 Score=224.42 Aligned_cols=225 Identities=19% Similarity=0.262 Sum_probs=154.1
Q ss_pred cccEEEEEEEEecCCE--EEEEEecC---CCCccCCccEEEEEEcCCCCCcccceeeeecCC-CCceEEEEEecCcchHH
Q 002711 575 YKSVRILKVAVYPGNV--LALQMSKP---QGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRTLGDWTSQ 648 (889)
Q Consensus 575 ~~~~~i~~v~~~~~~v--~~l~~~~p---~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~-~~~l~l~Ir~~G~wT~~ 648 (889)
++.++|++++.+++++ +.|.+..| ..+.|+||||+.|++|.. ..|||||+|+|. ++.++|+||..|.+|+.
T Consensus 5 ~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~~~pySias~p~~~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 5 LHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGV---GEVPISICSSPTRKGFFELCIRRAGRVTTV 81 (289)
T ss_pred ceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCC---CceeeEecCCCCCCCEEEEEEEeCChHHHH
Confidence 3568899999998874 44555444 247899999999999864 348999999986 46899999999999998
Q ss_pred HHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCC-CCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHh
Q 002711 649 LKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPA-QDYKDYDVLLLVGLGIGATPLISIIKDVLNNIK 727 (889)
Q Consensus 649 L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~-~~~~~~~~vllVagGiGITP~lsil~~l~~~~~ 727 (889)
|.+ + ++|+ +|.|+||||.+. .+....+.++|||||+||||++|++++++.+..
T Consensus 82 L~~-l-------------------~~Gd------~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~ 135 (289)
T PRK08345 82 IHR-L-------------------KEGD------IVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW 135 (289)
T ss_pred HHh-C-------------------CCCC------EEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCC
Confidence 753 2 2576 899999999843 222234589999999999999999999875310
Q ss_pred hhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHH
Q 002711 728 QQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALI 807 (889)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~ 807 (889)
..++++|+|++|+.+++ +|.++|.++++.. ..+.++.++++..+ .+...
T Consensus 136 ------------------------~~~~v~l~~~~r~~~d~-~~~deL~~l~~~~--~~~~~~~~~s~~~~-~~~~~--- 184 (289)
T PRK08345 136 ------------------------KYGNITLIYGAKYYEDL-LFYDELIKDLAEA--ENVKIIQSVTRDPE-WPGCH--- 184 (289)
T ss_pred ------------------------CCCcEEEEEecCCHHHh-hHHHHHHHHHhcC--CCEEEEEEecCCCC-CcCcc---
Confidence 13689999999999987 6888888876532 46888877775211 10000
Q ss_pred HHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhc
Q 002711 808 TMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSR 876 (889)
Q Consensus 808 ~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 876 (889)
+ ...+..-....|+. .+++.+.. .+.....||+|||++|++.+++.+.+...
T Consensus 185 -----------~--~~~~~~~~~~~g~v--~~~~~~~~--~~~~~~~vyiCGP~~m~~~v~~~L~~~Gv 236 (289)
T PRK08345 185 -----------G--LPQGFIERVCKGVV--TDLFREAN--TDPKNTYAAICGPPVMYKFVFKELINRGY 236 (289)
T ss_pred -----------c--cccccccccccCch--hhhhhhcC--CCccccEEEEECCHHHHHHHHHHHHHcCC
Confidence 0 00000000111222 12222111 11133579999999999999999887653
No 41
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.90 E-value=2.5e-22 Score=214.88 Aligned_cols=222 Identities=23% Similarity=0.363 Sum_probs=168.1
Q ss_pred ccccEEEEEEEEecCCEEEEEEecCCCCc--cCCccEEEEEEcCCCCCcccceeeeecCCCC-ceEEEEEec--CcchHH
Q 002711 574 GYKSVRILKVAVYPGNVLALQMSKPQGFK--YTSGQYIFVNCAAVSQFQWHPFSITSAPGDD-YLSIHIRTL--GDWTSQ 648 (889)
Q Consensus 574 ~~~~~~i~~v~~~~~~v~~l~~~~p~~~~--~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~-~l~l~Ir~~--G~wT~~ 648 (889)
.+..++|++++..+.+++++++..|.+.. |+||||+.|.++.-....++.|||+|+|.++ .+.+.||+. |..|+.
T Consensus 4 ~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S~~ 83 (266)
T COG1018 4 GFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGSNW 83 (266)
T ss_pred ceEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCCcccHH
Confidence 35678999999999999999999998875 9999999999997766899999999999876 899999987 445555
Q ss_pred HHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhh
Q 002711 649 LKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQ 728 (889)
Q Consensus 649 L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~ 728 (889)
|. ..+++|+ +|.|.+|.|.+..+....++++|+||||||||++||++++....
T Consensus 84 Lh-------------------~~lk~Gd------~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~-- 136 (266)
T COG1018 84 LH-------------------DHLKVGD------TLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG-- 136 (266)
T ss_pred HH-------------------hcCCCCC------EEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC--
Confidence 44 4556898 89999999999766544557999999999999999999986541
Q ss_pred hhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHH
Q 002711 729 QKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALIT 808 (889)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~ 808 (889)
. .+|.|++++|+.+++ -|.++ ++++.... +...++.|... +
T Consensus 137 -----------------------~-~~v~l~h~~R~~~~~-af~de-~~l~~~~~-~~~~~~~~~~~----~-------- 177 (266)
T COG1018 137 -----------------------P-ADVVLVHAARTPADL-AFRDE-LELAAELP-NALLLGLYTER----G-------- 177 (266)
T ss_pred -----------------------C-CCEEEEEecCChhhc-chhhH-HHHHhhCC-CCeeEEEEEec----C--------
Confidence 3 679999999999997 47776 66654432 23444444320 0
Q ss_pred HHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeC
Q 002711 809 MLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKEN 888 (889)
Q Consensus 809 ~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~ 888 (889)
-.-||++...+.... .+.. ..+|+|||.+|++.++..+.++... .=.+|.|.
T Consensus 178 ---------------------~~~g~~~~~~l~~~~---~~~~-r~~y~CGp~~fm~av~~~l~~~g~~---~~~vh~E~ 229 (266)
T COG1018 178 ---------------------KLQGRIDVSRLLSAA---PDGG-REVYLCGPGPFMQAVRLALEALGVP---DDRVHLEG 229 (266)
T ss_pred ---------------------CccccccHHHHhccC---CCCC-CEEEEECCHHHHHHHHHHHHHcCCC---hhcEEEee
Confidence 011456555432221 1122 5799999999999999999877543 44678887
Q ss_pred C
Q 002711 889 F 889 (889)
Q Consensus 889 F 889 (889)
|
T Consensus 230 F 230 (266)
T COG1018 230 F 230 (266)
T ss_pred c
Confidence 7
No 42
>PRK05713 hypothetical protein; Provisional
Probab=99.90 E-value=7.1e-23 Score=226.41 Aligned_cols=212 Identities=18% Similarity=0.311 Sum_probs=155.4
Q ss_pred ccEEEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCC-CCceEEEEEe--cCcchHHHHHH
Q 002711 576 KSVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRT--LGDWTSQLKSI 652 (889)
Q Consensus 576 ~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~-~~~l~l~Ir~--~G~wT~~L~~~ 652 (889)
...+|++++.+.+++.+|+++.+..+.|+||||+.|.++. -.+|||||+|.|. ++.++|+||. .|.+|..|.+
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~~- 167 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQ- 167 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCCCCCeEEEEEEEcCCCccchhhhc-
Confidence 4588999999999999999987777899999999999864 2689999999996 4789999985 4667876632
Q ss_pred HhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCC-CCCC-CCCEEEEEEcCcchhhHHHHHHHHHHHHhhhh
Q 002711 653 FAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPA-QDYK-DYDVLLLVGLGIGATPLISIIKDVLNNIKQQK 730 (889)
Q Consensus 653 ~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~-~~~~-~~~~vllVagGiGITP~lsil~~l~~~~~~~~ 730 (889)
+ ++|+ +|.|.||+|... .+.. ..+.+||||||+||||++||+++++...
T Consensus 168 l-------------------~~Gd------~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~---- 218 (312)
T PRK05713 168 L-------------------QVGD------LLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG---- 218 (312)
T ss_pred C-------------------CCCC------EEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC----
Confidence 2 3677 899999998532 1111 3467999999999999999999986541
Q ss_pred hcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHH
Q 002711 731 EIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITML 810 (889)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~ 810 (889)
..++++|+|++|+.+++ +|.++|+++++.. .+++++..++..
T Consensus 219 ---------------------~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~--~~~~~~~~~~~~-------------- 260 (312)
T PRK05713 219 ---------------------HQGPIRLLHLARDSAGH-YLAEPLAALAGRH--PQLSVELVTAAQ-------------- 260 (312)
T ss_pred ---------------------CCCcEEEEEEcCchHHh-hhHHHHHHHHHHC--CCcEEEEEECcc--------------
Confidence 13679999999999987 6888888887643 346665433210
Q ss_pred HhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 811 QSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 811 ~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
..+++.++.. . .....||+|||++|++.+++.+.+.. -..-.+|.|.|
T Consensus 261 --------------------------~~~~l~~~~~-~-~~~~~vyiCGp~~mv~~~~~~L~~~G---v~~~~i~~e~F 308 (312)
T PRK05713 261 --------------------------LPAALAELRL-V-SRQTMALLCGSPASVERFARRLYLAG---LPRNQLLADVF 308 (312)
T ss_pred --------------------------hhhhhhhccC-C-CCCeEEEEeCCHHHHHHHHHHHHHcC---CCHHHeeeccc
Confidence 0111111110 1 12357999999999999999987653 23445677776
No 43
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.90 E-value=1.6e-22 Score=211.06 Aligned_cols=202 Identities=16% Similarity=0.268 Sum_probs=150.0
Q ss_pred EEEEecCCEEEEEEecCCCC---ccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEecCc---chHHHHHHHh
Q 002711 582 KVAVYPGNVLALQMSKPQGF---KYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTLGD---WTSQLKSIFA 654 (889)
Q Consensus 582 ~v~~~~~~v~~l~~~~p~~~---~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~G~---wT~~L~~~~~ 654 (889)
+++.+.+++.++++..|... .|+||||+.|++|. ..+|||||+|.|.+ +.+.|+||..++ .|..|.+..
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~- 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELL- 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcC-
Confidence 45677899999999988763 89999999999986 36899999999875 889999998753 566655433
Q ss_pred hccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhccc
Q 002711 655 KVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEE 734 (889)
Q Consensus 655 ~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~ 734 (889)
++|+ ++.|.||||.+... ...+.+++||||+||||++|+++++...
T Consensus 78 ------------------~~Gd------~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~--------- 123 (211)
T cd06185 78 ------------------RVGD------ELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAAR--------- 123 (211)
T ss_pred ------------------CCCC------EEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhC---------
Confidence 2576 89999999987543 2356899999999999999999987531
Q ss_pred ccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhh
Q 002711 735 GITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIH 814 (889)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~ 814 (889)
.++++++|++|+.+++. +.++|.+++ ...+. ++.+..
T Consensus 124 ------------------~~~v~l~~~~r~~~~~~-~~~~l~~~~----~~~~~--~~~~~~------------------ 160 (211)
T cd06185 124 ------------------GADFELHYAGRSREDAA-FLDELAALP----GDRVH--LHFDDE------------------ 160 (211)
T ss_pred ------------------CCCEEEEEEeCCCcchh-HHHHHhhhc----CCcEE--EEECCC------------------
Confidence 35699999999998863 666666654 12333 222210
Q ss_pred cccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 815 HAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 815 ~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
.+|++..+++... + ....||+|||+.|++++++.+.+.+. ..=.+|.|.|
T Consensus 161 -----------------~~~~~~~~~~~~~----~-~~~~vyicGp~~m~~~~~~~l~~~gv---~~~~i~~e~F 210 (211)
T cd06185 161 -----------------GGRLDLAALLAAP----P-AGTHVYVCGPEGMMDAVRAAAAALGW---PEARLHFERF 210 (211)
T ss_pred -----------------CCccCHHHHhccC----C-CCCEEEEECCHHHHHHHHHHHHHcCC---ChhheEeeec
Confidence 0356666665542 1 13479999999999999999987643 3446777877
No 44
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.90 E-value=2.5e-22 Score=212.92 Aligned_cols=200 Identities=22% Similarity=0.339 Sum_probs=148.2
Q ss_pred EEEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCCCCceEEEEEecCcchHHHHHHHhhcc
Q 002711 578 VRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTLGDWTSQLKSIFAKVC 657 (889)
Q Consensus 578 ~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~~l~l~Ir~~G~wT~~L~~~~~~~~ 657 (889)
++|.++..+++++.+++++.| +.|+||||+.|.+|.. ..|||||+|.| +.+.|+||..|.+|+.|.+ .
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~--~~l~~~v~~~G~~s~~L~~-l---- 68 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID--GPNSITVKKVGEATSALHD-L---- 68 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC--CeEEEEEEecChHHHHHHh-c----
Confidence 467888999999999999875 5899999999999864 46999999998 7899999999999999875 3
Q ss_pred CCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccc
Q 002711 658 QPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGIT 737 (889)
Q Consensus 658 ~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~ 737 (889)
++|+ ++.|.||||.+.. .. ++.+++||||+||||++|+++++..+
T Consensus 69 ---------------~~Gd------~v~i~gP~G~~f~-~~-~~~~vliAgGtGitP~~sil~~~~~~------------ 113 (233)
T cd06220 69 ---------------KEGD------KLGIRGPYGNGFE-LV-GGKVLLIGGGIGIAPLAPLAERLKKA------------ 113 (233)
T ss_pred ---------------CCCC------EEEEECcCCCCcc-CC-CCeEEEEecCcChHHHHHHHHHHHhc------------
Confidence 2577 8999999998432 22 67999999999999999999987532
Q ss_pred cCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhccc
Q 002711 738 EDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAK 817 (889)
Q Consensus 738 ~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~ 817 (889)
++++|+|.+|+.+++ .+.++|++ . ..+ + +++.. ..
T Consensus 114 ----------------~~i~l~~~~r~~~d~-~~~~eL~~---~---~~~--~-~~~~~---~~---------------- 148 (233)
T cd06220 114 ----------------ADVTVLLGARTKEEL-LFLDRLRK---S---DEL--I-VTTDD---GS---------------- 148 (233)
T ss_pred ----------------CCEEEEEecCChHHC-hhHHHHhh---C---CcE--E-EEEeC---CC----------------
Confidence 469999999999886 46666654 1 112 1 12210 00
Q ss_pred CCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 818 NGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 818 ~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
.+ ..|+. .+++.+... .....||+|||++|++.+++.+.+.+. ...+|.|.|
T Consensus 149 ------~~-----~~g~~--~~~l~~~~~---~~~~~vyicGp~~m~~~~~~~L~~~g~----~~~i~~e~f 200 (233)
T cd06220 149 ------YG-----FKGFV--TDLLKELDL---EEYDAIYVCGPEIMMYKVLEILDERGV----RAQFSLERY 200 (233)
T ss_pred ------Cc-----cccee--hHHHhhhcc---cCCCEEEEECCHHHHHHHHHHHHhcCC----cEEEEeccc
Confidence 00 01222 234443331 122369999999999999999977533 577888876
No 45
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.90 E-value=2.9e-22 Score=214.39 Aligned_cols=144 Identities=22% Similarity=0.382 Sum_probs=118.4
Q ss_pred EEEEEEEecCCEEEEEEecCCC-CccCCccEEEEEEcCCCCCcccceeeeecC-CCCceEEEEEecCcchHHHHHHHhhc
Q 002711 579 RILKVAVYPGNVLALQMSKPQG-FKYTSGQYIFVNCAAVSQFQWHPFSITSAP-GDDYLSIHIRTLGDWTSQLKSIFAKV 656 (889)
Q Consensus 579 ~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~is~~e~HPFTIaSaP-~~~~l~l~Ir~~G~wT~~L~~~~~~~ 656 (889)
+|++++.+.+++..+++..|.. ..|+||||+.|+++.. .++|||||+|+| +++.++|+||..|..|..|.++.
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~--~~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l~--- 76 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEK--GERIPLTIADWDPEKGTITIVVQVVGKSTRELATLE--- 76 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCC--CCccceEeEEEcCCCCEEEEEEEeCCchHHHHHhcC---
Confidence 5778888999999999998753 5799999999998642 478999999986 46789999999999998774422
Q ss_pred cCCCCCCCccccccccccCCCCCCccEE-EEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccc
Q 002711 657 CQPPSVDQSGLLRADIGQADNRPRIPKL-LIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEG 735 (889)
Q Consensus 657 ~~~~~~~~s~~l~~~~~~g~~~~~~~~v-~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~ 735 (889)
+|+ ++ .|+||||.+.. ..+++.+||||||+||||++|+++++...
T Consensus 77 -----------------~G~------~v~~i~gP~G~~~~-~~~~~~~lliagG~GiaP~~~~l~~~~~~---------- 122 (248)
T cd06219 77 -----------------EGD------KIHDVVGPLGKPSE-IENYGTVVFVGGGVGIAPIYPIAKALKEA---------- 122 (248)
T ss_pred -----------------CCC------EeeeeecCCCCCee-cCCCCeEEEEeCcccHHHHHHHHHHHHHc----------
Confidence 566 78 69999999753 23467899999999999999999997542
Q ss_pred cccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHH
Q 002711 736 ITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVA 779 (889)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~ 779 (889)
.++++|+|++|+.+++ +|.++|.+++
T Consensus 123 -----------------~~~v~l~~~~r~~~~~-~~~~el~~l~ 148 (248)
T cd06219 123 -----------------GNRVITIIGARTKDLV-ILEDEFRAVS 148 (248)
T ss_pred -----------------CCeEEEEEEcCCHHHh-hhHHHHHhhc
Confidence 2579999999999986 6777777764
No 46
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.90 E-value=2.2e-22 Score=214.80 Aligned_cols=144 Identities=20% Similarity=0.316 Sum_probs=118.1
Q ss_pred EEEEEecCCEEEEEEecCC-CCccCCccEEEEEEcCCCCCcccceeeeecCC-CCceEEEEEecCcchHHHHHHHhhccC
Q 002711 581 LKVAVYPGNVLALQMSKPQ-GFKYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRTLGDWTSQLKSIFAKVCQ 658 (889)
Q Consensus 581 ~~v~~~~~~v~~l~~~~p~-~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~-~~~l~l~Ir~~G~wT~~L~~~~~~~~~ 658 (889)
++++.+++++.+|++..|. .+.|+||||++|++|......+|||||+|.|. +++++|+||..|..|+.|.++
T Consensus 2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~------ 75 (243)
T cd06192 2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAEL------ 75 (243)
T ss_pred ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhC------
Confidence 4567788999999999875 37899999999999754456899999999974 689999999999999887532
Q ss_pred CCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhccccccc
Q 002711 659 PPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITE 738 (889)
Q Consensus 659 ~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~ 738 (889)
++|+ .+.|.||||.+.......+.++|||||+||||++++++++..+
T Consensus 76 --------------~~G~------~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~------------- 122 (243)
T cd06192 76 --------------KPGE------KLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN------------- 122 (243)
T ss_pred --------------CCCC------EEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC-------------
Confidence 2576 8999999998754333467999999999999999999998642
Q ss_pred CCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHH
Q 002711 739 DGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEV 778 (889)
Q Consensus 739 ~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el 778 (889)
.++++++|++|+.+++ ++.++|.++
T Consensus 123 --------------~~~v~l~~~~r~~~d~-~~~~el~~~ 147 (243)
T cd06192 123 --------------GNKVTVLAGAKKAKEE-FLDEYFELP 147 (243)
T ss_pred --------------CCeEEEEEecCcHHHH-HHHHHHHhh
Confidence 3579999999999985 567766654
No 47
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.89 E-value=5.3e-22 Score=213.96 Aligned_cols=207 Identities=18% Similarity=0.230 Sum_probs=150.3
Q ss_pred cEEEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCCCCceEEEEEecCcchHHHHHHHhhc
Q 002711 577 SVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTLGDWTSQLKSIFAKV 656 (889)
Q Consensus 577 ~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~~l~l~Ir~~G~wT~~L~~~~~~~ 656 (889)
..+|++++.+++++.++++..| +.|+||||+.|.+|... .|||||++.+ ++.++|+||..|..|..|.+ +
T Consensus 9 ~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~-~~~~~~~Ik~~G~~S~~L~~-l--- 78 (263)
T PRK08221 9 AYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG-DGYIDLTIRRVGKVTDEIFN-L--- 78 (263)
T ss_pred cEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC-CCEEEEEEEeCCchhhHHHh-C---
Confidence 4788899999999999999876 57899999999998643 4999999876 67899999999999988754 2
Q ss_pred cCCCCCCCccccccccccCCCCCCccEEEEeCCCCC-CCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccc
Q 002711 657 CQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGA-PAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEG 735 (889)
Q Consensus 657 ~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~-~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~ 735 (889)
++|+ .|.|.||||. +..+....+.+||||||+||||++|++++++.+..
T Consensus 79 ----------------~~Gd------~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~-------- 128 (263)
T PRK08221 79 ----------------KEGD------KLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ-------- 128 (263)
T ss_pred ----------------CCCC------EEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc--------
Confidence 2677 8999999998 44333345689999999999999999999865311
Q ss_pred cccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhc
Q 002711 736 ITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHH 815 (889)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~ 815 (889)
..++++|+|++|+.+++ .+.++|.++++. .. ++..+++..+ .
T Consensus 129 ----------------~~~~v~L~~g~r~~~~l-~~~~el~~~~~~---~~--~~~~~~~~~~-~--------------- 170 (263)
T PRK08221 129 ----------------EIKSLDLILGFKNPDDI-LFKEDLKRWREK---IN--LILTLDEGEE-G--------------- 170 (263)
T ss_pred ----------------cCceEEEEEecCCHHHh-hHHHHHHHHhhc---Cc--EEEEecCCCC-C---------------
Confidence 13689999999999986 678888877652 12 2222222100 0
Q ss_pred ccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhc
Q 002711 816 AKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSR 876 (889)
Q Consensus 816 ~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 876 (889)
...+.||.+ +.+.+.... ......||+||||+|++++++...+...
T Consensus 171 ------------~~~~~G~v~--~~l~~~~~~-~~~~~~vylCGp~~mv~~~~~~L~~~Gv 216 (263)
T PRK08221 171 ------------YRGNVGLVT--KYIPELTLK-DIDNMQVIVVGPPIMMKFTVLEFLKRGI 216 (263)
T ss_pred ------------CccCccccC--hhhHhccCC-CcCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 011235554 222222111 1134679999999999999999887643
No 48
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.89 E-value=7.4e-22 Score=217.53 Aligned_cols=236 Identities=13% Similarity=0.152 Sum_probs=154.4
Q ss_pred ccEEEEEEEEec-----CCEEEEEEecCCCCccCCccEEEEEEcCCC------CCcccceeeeecCCC-----CceEEEE
Q 002711 576 KSVRILKVAVYP-----GNVLALQMSKPQGFKYTSGQYIFVNCAAVS------QFQWHPFSITSAPGD-----DYLSIHI 639 (889)
Q Consensus 576 ~~~~i~~v~~~~-----~~v~~l~~~~p~~~~~~pGQyv~l~~p~is------~~e~HPFTIaSaP~~-----~~l~l~I 639 (889)
...+|++++.+. +++.+|++..|..+.|+||||+.|..|... +..+++|||+|+|.+ ..++|+|
T Consensus 25 ~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~V 104 (307)
T PLN03116 25 YTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCV 104 (307)
T ss_pred EEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEE
Confidence 467888898887 899999999988899999999999876421 124899999999942 2699999
Q ss_pred EecCcchHHHHHHHhhccC-CCCCCCccccccccccCCCCCCccEEEEeCCCCCCCC-CC-CCCCEEEEEEcCcchhhHH
Q 002711 640 RTLGDWTSQLKSIFAKVCQ-PPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQ-DY-KDYDVLLLVGLGIGATPLI 716 (889)
Q Consensus 640 r~~G~wT~~L~~~~~~~~~-~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~-~~-~~~~~vllVagGiGITP~l 716 (889)
|...--+.... ..+ .+.|..|.++.. +++|+ .|.|.||+|.+.. +- ...+.+||||||+||||++
T Consensus 105 r~~~~~~~~~~-----~~~~~~~G~~S~~L~~-l~~Gd------~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~ 172 (307)
T PLN03116 105 RRAVYYDPETG-----KEDPAKKGVCSNFLCD-AKPGD------KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFR 172 (307)
T ss_pred EEEEEecCCcC-----CCCCccCcchhhhHhh-CCCCC------EEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHH
Confidence 97511000000 000 023334444443 55787 8999999999753 21 2346899999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeecc
Q 002711 717 SIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSV 796 (889)
Q Consensus 717 sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~ 796 (889)
||+++++....... ....+++|+|++|+.+++ .|.++|.++++... .++.++..+++.
T Consensus 173 sml~~~l~~~~~~~--------------------~~~~~v~L~~g~R~~~d~-~~~deL~~l~~~~~-~~~~~~~~~sr~ 230 (307)
T PLN03116 173 GFLRRMFMEDVPAF--------------------KFGGLAWLFLGVANSDSL-LYDDEFERYLKDYP-DNFRYDYALSRE 230 (307)
T ss_pred HHHHHHHhhccccc--------------------cCCCcEEEEEecCCcccc-hHHHHHHHHHHhCC-CcEEEEEEEccC
Confidence 99998865421000 013579999999999986 58888888766542 357777655542
Q ss_pred ccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhh---CCCCeEEEEEeCChhHHHHHHHHHHh
Q 002711 797 YEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVK---HTDERVGVFYCGAPGLTGELRRLSQD 873 (889)
Q Consensus 797 ~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~---~~~~~v~V~~CGP~~m~~~vr~~~~~ 873 (889)
.+.. .| ++-...+.+.+.... .......||+|||++|++.+++++.+
T Consensus 231 ~~~~-----------------------~g-------~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp~~mv~~v~~~L~~ 280 (307)
T PLN03116 231 QKNK-----------------------KG-------GKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMMPGIQDTLKR 280 (307)
T ss_pred Cccc-----------------------CC-------CccchhhHHHHHHHHHHhhhcCCcEEEEeCCHHHHHHHHHHHHH
Confidence 1100 00 011112222221110 01123579999999999999888777
Q ss_pred hh
Q 002711 874 FS 875 (889)
Q Consensus 874 ~~ 875 (889)
..
T Consensus 281 ~~ 282 (307)
T PLN03116 281 VA 282 (307)
T ss_pred HH
Confidence 64
No 49
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.89 E-value=8.8e-22 Score=217.05 Aligned_cols=224 Identities=13% Similarity=0.179 Sum_probs=158.2
Q ss_pred hhccccEEEEEEEEecCCEEEEEEecCC--CCccCCccEEEEEEcC-C--CCCcccceeeeecCC-CCceEEEEEec--C
Q 002711 572 RSGYKSVRILKVAVYPGNVLALQMSKPQ--GFKYTSGQYIFVNCAA-V--SQFQWHPFSITSAPG-DDYLSIHIRTL--G 643 (889)
Q Consensus 572 r~~~~~~~i~~v~~~~~~v~~l~~~~p~--~~~~~pGQyv~l~~p~-i--s~~e~HPFTIaSaP~-~~~l~l~Ir~~--G 643 (889)
...++.++|.+++.+++++.+++|..|. .+.++||||+.+.++. . ....++||||+|+|+ +++++|+||.. |
T Consensus 49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G 128 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDG 128 (325)
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCC
Confidence 4567889999999999999999998754 6899999999987763 2 123589999999996 57899999986 4
Q ss_pred cchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHH
Q 002711 644 DWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVL 723 (889)
Q Consensus 644 ~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~ 723 (889)
..|..|.+ +++|+ .|.|.||+|....+....+.+|||||||||||++||+++++
T Consensus 129 ~~S~~L~~--------------------lk~Gd------~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l 182 (325)
T PTZ00274 129 LMTNHLFG--------------------MHVGD------KLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSL 182 (325)
T ss_pred cccHHHhc--------------------CCCCC------EEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHH
Confidence 45666653 34788 89999998876433333468999999999999999999987
Q ss_pred HHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChh
Q 002711 724 NNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDAR 803 (889)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~ 803 (889)
.+..... .....+|+|+|++|+.+++ .|.++|+++++... +.++++..+++..+..+
T Consensus 183 ~~~~~~~-------------------~~~~~~v~Llyg~R~~~di-~~~~eL~~La~~~~-~~f~v~~~ls~~~~~~~-- 239 (325)
T PTZ00274 183 TEPWDSG-------------------EVDRTKLSFLFCNRTERHI-LLKGLFDDLARRYS-NRFKVYYTIDQAVEPDK-- 239 (325)
T ss_pred hcccccc-------------------cCCCCeEEEEEEcCCHHHh-hHHHHHHHHHHhCC-CcEEEEEEeCCCCcccC--
Confidence 6421100 0023589999999999986 68899988876543 35777765553211000
Q ss_pred hHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHH
Q 002711 804 SALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRR 869 (889)
Q Consensus 804 s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~ 869 (889)
. ..+.||.+- .++.+...........||+|||++|++.+..
T Consensus 240 -------------------w-----~g~~G~V~~-~ll~~~~~~~~~~~~~vylCGPp~Mm~av~~ 280 (325)
T PTZ00274 240 -------------------W-----NHFLGYVTK-EMVRRTMPAPEEKKKIIMLCGPDQLLNHVAG 280 (325)
T ss_pred -------------------C-----CCCCCccCH-HHHHHhcCCCccCCcEEEEeCCHHHHHHhcC
Confidence 0 112366552 2333332211112346999999999999965
No 50
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.89 E-value=5.4e-22 Score=227.19 Aligned_cols=230 Identities=17% Similarity=0.335 Sum_probs=161.8
Q ss_pred ccEEEEEEEEecCCEEEEEEecC--CCCccCCccEEEEEEcCC-----------------------------CCCcccce
Q 002711 576 KSVRILKVAVYPGNVLALQMSKP--QGFKYTSGQYIFVNCAAV-----------------------------SQFQWHPF 624 (889)
Q Consensus 576 ~~~~i~~v~~~~~~v~~l~~~~p--~~~~~~pGQyv~l~~p~i-----------------------------s~~e~HPF 624 (889)
+..+|++++.+.+++.++++..| .++.|+||||+.|++|.. ....++||
T Consensus 134 ~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 213 (409)
T PRK05464 134 WECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAY 213 (409)
T ss_pred EEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeee
Confidence 35788888999999999999887 457899999999999842 12357899
Q ss_pred eeeecCCC-CceEEEEEec-----------CcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCC
Q 002711 625 SITSAPGD-DYLSIHIRTL-----------GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGA 692 (889)
Q Consensus 625 TIaSaP~~-~~l~l~Ir~~-----------G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~ 692 (889)
||+|+|.+ +.+.|+||.. |..|..|.+ +++|+ .+.|.||+|.
T Consensus 214 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~--------------------l~~Gd------~v~v~gP~G~ 267 (409)
T PRK05464 214 SMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFS--------------------LKPGD------KVTISGPFGE 267 (409)
T ss_pred ccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHh--------------------CCCCC------EEEEEccccC
Confidence 99999965 5899999973 556665543 34687 8999999999
Q ss_pred CCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHH
Q 002711 693 PAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFR 772 (889)
Q Consensus 693 ~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~ 772 (889)
+... ...+.+||||||+||||++|++++++.... ..++++|+|++|+.+++ .|.
T Consensus 268 f~~~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~------------------------~~~~v~L~~g~r~~~d~-~~~ 321 (409)
T PRK05464 268 FFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK------------------------SKRKISFWYGARSLREM-FYV 321 (409)
T ss_pred cEec-CCCceEEEEEeccChhHHHHHHHHHHhCCC------------------------CCceEEEEEecCCHHHh-hHH
Confidence 8643 345789999999999999999998765311 14689999999999886 577
Q ss_pred HHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhC-CCC
Q 002711 773 GVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKH-TDE 851 (889)
Q Consensus 773 ~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~-~~~ 851 (889)
++++++++.. .++.++..+++..+ .+. ..| +-|+.+ +.+.+.....+ ...
T Consensus 322 ~el~~l~~~~--~~~~~~~~~s~~~~-~~~--------------------~~g-----~~G~v~-~~l~~~~l~~~~~~~ 372 (409)
T PRK05464 322 EDFDQLAAEN--PNFKWHVALSDPLP-EDN--------------------WTG-----YTGFIH-NVLYENYLKDHEAPE 372 (409)
T ss_pred HHHHHHHHhC--CCeEEEEEEcCCCC-CCC--------------------CCC-----ccceeC-HHHHHhhhhhcCCCC
Confidence 7887776543 35666665443211 010 001 113322 12222222211 123
Q ss_pred eEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 852 RVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 852 ~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
...||+|||++|++.+++.+.+.+. ..-.+|.|.|
T Consensus 373 ~~~vyiCGP~~m~~av~~~L~~~Gv---~~~~I~~E~F 407 (409)
T PRK05464 373 DCEYYMCGPPMMNAAVIKMLKDLGV---EDENILLDDF 407 (409)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCC---CHHHEEEccc
Confidence 4679999999999999999987643 3455677877
No 51
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.89 E-value=2.2e-21 Score=211.97 Aligned_cols=233 Identities=14% Similarity=0.201 Sum_probs=153.0
Q ss_pred cEEEEEEEEec-----CCEEEEEEecCCCCccCCccEEEEEEcCCC-----CCcccceeeeecCCC-----CceEEEEEe
Q 002711 577 SVRILKVAVYP-----GNVLALQMSKPQGFKYTSGQYIFVNCAAVS-----QFQWHPFSITSAPGD-----DYLSIHIRT 641 (889)
Q Consensus 577 ~~~i~~v~~~~-----~~v~~l~~~~p~~~~~~pGQyv~l~~p~is-----~~e~HPFTIaSaP~~-----~~l~l~Ir~ 641 (889)
.++|++++.+. +++.++++..+..+.|+|||||.|.+|... +..++||||+|+|.+ +.++|+||.
T Consensus 10 ~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~ 89 (286)
T cd06208 10 IGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKR 89 (286)
T ss_pred EEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEE
Confidence 46788888886 689999999877899999999999876432 134799999999853 589999998
Q ss_pred cCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCC-CCCCEEEEEEcCcchhhHHHHHH
Q 002711 642 LGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDY-KDYDVLLLVGLGIGATPLISIIK 720 (889)
Q Consensus 642 ~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~-~~~~~vllVagGiGITP~lsil~ 720 (889)
..++|.... ..+.|..|.++.. +++|+ +|.|.||+|.+.... ...+.++|||||+||||++|+++
T Consensus 90 ~~~~~~~~~-------~~~~G~~S~~L~~-l~~Gd------~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~ 155 (286)
T cd06208 90 LVYTDPETD-------ETKKGVCSNYLCD-LKPGD------DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLR 155 (286)
T ss_pred EEEecCCCC-------ceeccchHHHHhh-CCCCC------EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHH
Confidence 733221000 0011222333322 34677 899999999875322 23457999999999999999999
Q ss_pred HHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCC
Q 002711 721 DVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEG 800 (889)
Q Consensus 721 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~ 800 (889)
+++.+..... ...++++|+|++|+.+++ .|.++|.++++... ..++++..+++..+.
T Consensus 156 ~~~~~~~~~~--------------------~~~~~v~L~~g~r~~~d~-~~~~el~~l~~~~~-~~~~~~~~~sr~~~~- 212 (286)
T cd06208 156 RLFREKHADY--------------------KFTGLAWLFFGVPNSDSL-LYDDELEKYPKQYP-DNFRIDYAFSREQKN- 212 (286)
T ss_pred HHHHhhhccc--------------------CCCCCEEEEEEecCccch-hHHHHHHHHHHhCC-CcEEEEEEEcCCCCC-
Confidence 9876521100 024679999999999986 57888888876432 357777666542110
Q ss_pred ChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHH----HHhhCCCCeEEEEEeCChhHHHHHHHHHHhhh
Q 002711 801 DARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKH----VAVKHTDERVGVFYCGAPGLTGELRRLSQDFS 875 (889)
Q Consensus 801 d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~----~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 875 (889)
. .|.. |+ +.+.+.+ +..........||+|||++|++.|++.+.++.
T Consensus 213 ~----------------------~g~~-----g~--v~~~i~~~~~~l~~~l~~~~~~vYiCGp~~m~~~v~~~L~~~~ 262 (286)
T cd06208 213 A----------------------DGGK-----MY--VQDRIAEYAEEIWNLLDKDNTHVYICGLKGMEPGVDDALTSVA 262 (286)
T ss_pred C----------------------CCCc-----ee--hhhHHHHhHHHHHHHHhcCCcEEEEeCCchHHHHHHHHHHHHH
Confidence 0 0000 11 1122221 11111122346999999999999999988854
No 52
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.88 E-value=2.2e-21 Score=211.23 Aligned_cols=200 Identities=21% Similarity=0.338 Sum_probs=144.6
Q ss_pred EEEEEEEEecCCEEEEEEecCCC-CccCCccEEEEEEcCCCCCcccceeeeecCC-CCceEEEEEecCcchHHHHHHHhh
Q 002711 578 VRILKVAVYPGNVLALQMSKPQG-FKYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRTLGDWTSQLKSIFAK 655 (889)
Q Consensus 578 ~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~-~~~l~l~Ir~~G~wT~~L~~~~~~ 655 (889)
++|++++.+.+++..+++..|.. ..++||||+.|+++.. .++|||||+|+|. ++.++|+||..|..|+.|.++
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~--~~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l--- 76 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEK--GERIPLTIADYDREKGTITIVFQAVGKSTRKLAEL--- 76 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCC--CCceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcC---
Confidence 46788889999999999987753 5799999999999753 3679999999764 578999999999999988632
Q ss_pred ccCCCCCCCccccccccccCCCCCCccEE-EEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhccc
Q 002711 656 VCQPPSVDQSGLLRADIGQADNRPRIPKL-LIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEE 734 (889)
Q Consensus 656 ~~~~~~~~~s~~l~~~~~~g~~~~~~~~v-~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~ 734 (889)
++|+ .+ .|.||||.+.. ...++.++|||||+||||++++++++..+
T Consensus 77 -----------------~~Gd------~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~--------- 123 (281)
T PRK06222 77 -----------------KEGD------SILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEA--------- 123 (281)
T ss_pred -----------------CCCC------EEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHC---------
Confidence 2676 78 69999999753 33457899999999999999999987532
Q ss_pred ccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhh
Q 002711 735 GITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIH 814 (889)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~ 814 (889)
..+++++|..|+.+++ .|.+++.+++. ++ +++.. .+.
T Consensus 124 ------------------~~~v~l~~g~r~~~d~-~~~~el~~~~~-------~~--~v~~~--d~~------------- 160 (281)
T PRK06222 124 ------------------GNKVITIIGARNKDLL-ILEDEMKAVSD-------EL--YVTTD--DGS------------- 160 (281)
T ss_pred ------------------CCeEEEEEecCCHHHh-hcHHHHHhhCC-------eE--EEEcC--CCC-------------
Confidence 2479999999999986 46666655432 11 12211 000
Q ss_pred cccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhh
Q 002711 815 HAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFS 875 (889)
Q Consensus 815 ~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 875 (889)
.| +.|+ ..+.+.+....... ...||+|||++|++.+++.+.+..
T Consensus 161 ---------~g-----~~G~--v~~~l~~~~~~~~~-~~~vy~CGP~~M~~~v~~~l~~~g 204 (281)
T PRK06222 161 ---------YG-----RKGF--VTDVLKELLESGKK-VDRVVAIGPVIMMKFVAELTKPYG 204 (281)
T ss_pred ---------cC-----cccc--hHHHHHHHhhcCCC-CcEEEEECCHHHHHHHHHHHHhcC
Confidence 01 0122 22344443322111 236999999999999999987764
No 53
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.88 E-value=2.4e-21 Score=208.70 Aligned_cols=207 Identities=19% Similarity=0.245 Sum_probs=147.8
Q ss_pred cEEEEEEEEecCCEEEEEEecCCCCccCCccEEEEEEcCCCCCcccceeeeecCCCCceEEEEEecCcchHHHHHHHhhc
Q 002711 577 SVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTLGDWTSQLKSIFAKV 656 (889)
Q Consensus 577 ~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~~l~l~Ir~~G~wT~~L~~~~~~~ 656 (889)
.++|+++...++++..++++.| +.++||||+.|.+|.. ..|||||++. +++.++|+||..|+.|..|.+ +
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~---~~~pySi~~~-~~~~l~~~Vk~~G~~S~~L~~-l--- 76 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKY---GEAPISVSGI-GEGYIDLTIRRVGKVTDEVFT-L--- 76 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCC---CccceecCCC-CCCeEEEEEEeCchhhHHHHc-C---
Confidence 5778888888899999999765 6799999999999864 3589999984 568899999999999988753 2
Q ss_pred cCCCCCCCccccccccccCCCCCCccEEEEeCCCCC-CCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccc
Q 002711 657 CQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGA-PAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEG 735 (889)
Q Consensus 657 ~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~-~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~ 735 (889)
++|+ +|.|.||||. +..+....++++|||||+||||++||+++++.+..
T Consensus 77 ----------------~~Gd------~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~-------- 126 (261)
T TIGR02911 77 ----------------KEGD------NLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK-------- 126 (261)
T ss_pred ----------------CCCC------EEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc--------
Confidence 2677 8999999998 43222245789999999999999999999865311
Q ss_pred cccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhc
Q 002711 736 ITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHH 815 (889)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~ 815 (889)
..++++|+|++|+.+++ +|.++|.++++. ..+ +..+... +.+.
T Consensus 127 ----------------~~~~v~L~~~~r~~~~~-~~~~eL~~l~~~---~~~--~~~~~~~--~~~~------------- 169 (261)
T TIGR02911 127 ----------------EIKSLNLILGFKTPDDI-LFKEDIAEWKGN---INL--TLTLDEA--EEDY------------- 169 (261)
T ss_pred ----------------cCceEEEEEecCCHHHh-hHHHHHHHHHhc---CcE--EEEEcCC--CCCC-------------
Confidence 13689999999999986 678888887652 123 2222211 0000
Q ss_pred ccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhc
Q 002711 816 AKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSR 876 (889)
Q Consensus 816 ~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 876 (889)
....|+-+ ..+.+.... +.....||+|||++|++++++.+.+...
T Consensus 170 -------------~~~~g~v~--~~l~~~~~~-~~~~~~v~lCGp~~mv~~~~~~L~~~Gv 214 (261)
T TIGR02911 170 -------------KGNIGLVT--KYIPELTLK-DIEEVQAIVVGPPIMMKFTVQELLKKGI 214 (261)
T ss_pred -------------cCCeeccC--HhHHhccCC-CccceEEEEECCHHHHHHHHHHHHHcCC
Confidence 00113322 222221111 1224579999999999999999887643
No 54
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.88 E-value=1.3e-21 Score=223.78 Aligned_cols=230 Identities=17% Similarity=0.338 Sum_probs=160.3
Q ss_pred ccEEEEEEEEecCCEEEEEEecCC--CCccCCccEEEEEEcCC-----------------------------CCCcccce
Q 002711 576 KSVRILKVAVYPGNVLALQMSKPQ--GFKYTSGQYIFVNCAAV-----------------------------SQFQWHPF 624 (889)
Q Consensus 576 ~~~~i~~v~~~~~~v~~l~~~~p~--~~~~~pGQyv~l~~p~i-----------------------------s~~e~HPF 624 (889)
...+|++++.+.+++.++++..+. ++.|+||||+.|.+|.. ....+|||
T Consensus 130 ~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 209 (405)
T TIGR01941 130 WECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAY 209 (405)
T ss_pred eeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceee
Confidence 356788888899999999998763 47899999999999743 12357999
Q ss_pred eeeecCCC-CceEEEEEec-----------CcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCC
Q 002711 625 SITSAPGD-DYLSIHIRTL-----------GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGA 692 (889)
Q Consensus 625 TIaSaP~~-~~l~l~Ir~~-----------G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~ 692 (889)
||+|+|.+ +.++|+||.. |..|..|.+ +++|+ .+.|.||||.
T Consensus 210 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~--------------------l~~Gd------~v~i~gP~G~ 263 (405)
T TIGR01941 210 SMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFS--------------------LKPGD------KVTISGPFGE 263 (405)
T ss_pred cCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhc--------------------CCCcC------EEEEEeccCC
Confidence 99999965 6899999974 555555542 34787 8999999999
Q ss_pred CCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHH
Q 002711 693 PAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFR 772 (889)
Q Consensus 693 ~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~ 772 (889)
+... ...+.+||||||+||||++|++++++.... ..++++|+|++|+.+++ +|.
T Consensus 264 f~l~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~------------------------~~~~v~l~~g~R~~~dl-~~~ 317 (405)
T TIGR01941 264 FFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK------------------------SKRKISFWYGARSLREM-FYQ 317 (405)
T ss_pred Ceec-CCCCCEEEEecCcCcchHHHHHHHHHhcCC------------------------CCCeEEEEEecCCHHHH-hHH
Confidence 8643 345689999999999999999998764311 24679999999999886 678
Q ss_pred HHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhC-CCC
Q 002711 773 GVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKH-TDE 851 (889)
Q Consensus 773 ~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~-~~~ 851 (889)
+++.++++.. +++.++..+++... .+ ...| ..|+.. +.+........ ...
T Consensus 318 ~el~~l~~~~--~~~~~~~~~s~~~~-~~--------------------~~~g-----~~G~v~-~~l~~~~l~~~~~~~ 368 (405)
T TIGR01941 318 EDFDQLEAEN--PNFVWHVALSDPQP-ED--------------------NWTG-----YTGFIH-NVLYENYLKDHDAPE 368 (405)
T ss_pred HHHHHHHHhC--CCeEEEEEeCCCCc-cC--------------------CCCC-----ccceeC-HHHHHhhhcccCCCC
Confidence 8888776543 45777765553211 00 0011 112322 11222222111 113
Q ss_pred eEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 852 RVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 852 ~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
...||+|||++|++.+++.+.+.+. ..=.+|.|.|
T Consensus 369 ~~~vylCGP~~m~~av~~~L~~~Gv---~~~~I~~E~F 403 (405)
T TIGR01941 369 DCEFYMCGPPMMNAAVIKMLEDLGV---ERENILLDDF 403 (405)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC---CHHHEEEecc
Confidence 4579999999999999999987643 2445677776
No 55
>PRK05802 hypothetical protein; Provisional
Probab=99.87 E-value=5.3e-21 Score=210.99 Aligned_cols=150 Identities=19% Similarity=0.323 Sum_probs=121.2
Q ss_pred ccEEEEEEEEecCCEEEEEEecCCC---CccCCccEEEEEEcCCCCCcccceeeeecCC-CCceEEEEEecCcchHHHHH
Q 002711 576 KSVRILKVAVYPGNVLALQMSKPQG---FKYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRTLGDWTSQLKS 651 (889)
Q Consensus 576 ~~~~i~~v~~~~~~v~~l~~~~p~~---~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~-~~~l~l~Ir~~G~wT~~L~~ 651 (889)
+..+|++++.+.+++..+++..|.. ..++|||||+|++|....+..|||||+++|. ++.++|+||..|..|+.|.+
T Consensus 65 ~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~G~~T~~L~~ 144 (320)
T PRK05802 65 YECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIRGVKTKKIAK 144 (320)
T ss_pred EeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEecChhHHHHhc
Confidence 4578899999999999999998754 3479999999999865566789999999875 57899999999999998863
Q ss_pred HHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCC--CC-CC--CCCCEEEEEEcCcchhhHHHHHHHHHHHH
Q 002711 652 IFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAP--AQ-DY--KDYDVLLLVGLGIGATPLISIIKDVLNNI 726 (889)
Q Consensus 652 ~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~--~~-~~--~~~~~vllVagGiGITP~lsil~~l~~~~ 726 (889)
+ ++|+ .+.|.||||.. .. +. ...+.+|+|||||||||+++++++++.+
T Consensus 145 l--------------------~~Gd------~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~- 197 (320)
T PRK05802 145 L--------------------NKGD------EILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSN- 197 (320)
T ss_pred C--------------------CCCC------EEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHc-
Confidence 2 2677 89999999653 21 11 2346899999999999999999998643
Q ss_pred hhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHH
Q 002711 727 KQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVA 779 (889)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~ 779 (889)
..+++++|..|+.+++ ++.++++++.
T Consensus 198 --------------------------~~~v~li~g~r~~~~~-~~~~el~~~~ 223 (320)
T PRK05802 198 --------------------------GNKIIVIIDKGPFKNN-FIKEYLELYN 223 (320)
T ss_pred --------------------------CCcEEEEEeCCCHHHH-HHHHHHHHhh
Confidence 2469999999999987 5777776653
No 56
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.87 E-value=9e-21 Score=204.70 Aligned_cols=208 Identities=15% Similarity=0.228 Sum_probs=145.5
Q ss_pred cCCEEEEEEecC--CCCccCCccEEEEEEcCCCCCcccceeeeecCCC--CceEEEEEec-----------CcchHHHHH
Q 002711 587 PGNVLALQMSKP--QGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD--DYLSIHIRTL-----------GDWTSQLKS 651 (889)
Q Consensus 587 ~~~v~~l~~~~p--~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~--~~l~l~Ir~~-----------G~wT~~L~~ 651 (889)
|.+|.+|+|..| ..+.|+||||+.|.+|. ...+|||||+|.|++ +.+.|+||.. |..|..|.+
T Consensus 14 ~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 14 PRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CCceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 458999999988 57899999999999875 357899999999965 7899999987 666776653
Q ss_pred HHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCC-CCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhh
Q 002711 652 IFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYG-APAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQK 730 (889)
Q Consensus 652 ~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG-~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~ 730 (889)
+++|+ .|.|.||+| .+..+-...+.+||||||+||||++|++++++....+..
T Consensus 92 --------------------lk~Gd------~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~ 145 (267)
T cd06182 92 --------------------LQLGA------KVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGK 145 (267)
T ss_pred --------------------CCCCC------EEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccc
Confidence 23677 899999999 665433335689999999999999999999876421110
Q ss_pred hcccccccCCCCCcCCCCCCCccceEEEEEEeCCC-CchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHH
Q 002711 731 EIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQ-GSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITM 809 (889)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~-~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~ 809 (889)
...+++|+|++|+. +++ .|.+.|.++++.. ..+.++..+++.... ..
T Consensus 146 ---------------------~~~~v~l~~g~r~~~~d~-~~~del~~~~~~~--~~~~~~~~~S~~~~~--~~------ 193 (267)
T cd06182 146 ---------------------ARGPAWLFFGCRNFASDY-LYREELQEALKDG--ALTRLDVAFSREQAE--PK------ 193 (267)
T ss_pred ---------------------cCCCEEEEEeCCCCcccc-cHHHHHHHHHhCC--CcceEEEEEccCCCC--Cc------
Confidence 24679999999999 776 5788888887632 456666665542110 00
Q ss_pred HHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChh-HHHHHHHHHHhhhc
Q 002711 810 LQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPG-LTGELRRLSQDFSR 876 (889)
Q Consensus 810 ~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~-m~~~vr~~~~~~~~ 876 (889)
+ .+. +...-+ .+.+.+... .. ..||+|||++ |++.+.+++.++..
T Consensus 194 ---------------~-~v~-~~l~~~-~~~l~~~l~---~~-~~vyvCGp~~~m~~~v~~~L~~~~~ 239 (267)
T cd06182 194 ---------------V-YVQ-DKLKEH-AEELRRLLN---EG-AHIYVCGDAKSMAKDVEDALVKIIA 239 (267)
T ss_pred ---------------e-ehH-HHHHHh-HHHHHHHHh---cC-CEEEEECCcccchHHHHHHHHHHHH
Confidence 0 000 000000 011111111 11 2799999999 99999999988853
No 57
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.86 E-value=1.6e-20 Score=200.58 Aligned_cols=149 Identities=17% Similarity=0.245 Sum_probs=112.8
Q ss_pred CEEEEEEecC-CCCccCCccEEEEEEcCCCCCcccceeeeecCCCCceEEEEEecCc-------chHHHHHHHhhccCCC
Q 002711 589 NVLALQMSKP-QGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTLGD-------WTSQLKSIFAKVCQPP 660 (889)
Q Consensus 589 ~v~~l~~~~p-~~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~~l~l~Ir~~G~-------wT~~L~~~~~~~~~~~ 660 (889)
++.+|++..+ ..+.|+||||+.|.++. ...+|||||+|+|.++.++|+||..++ .|..|.+.
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~~~~l~l~Vk~~~~~~~~~G~~S~~L~~~-------- 86 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPADGALELLVRQVRHADGGLGLGSGWLTRH-------- 86 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCCCCEEEEEEEEeccCCCCCeeechhhhhC--------
Confidence 5899999887 57899999999999764 457899999999988899999998753 55555443
Q ss_pred CCCCccccccccccCCCCCCccEEEEeCCCCC-CCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccC
Q 002711 661 SVDQSGLLRADIGQADNRPRIPKLLIDGPYGA-PAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITED 739 (889)
Q Consensus 661 ~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~-~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~ 739 (889)
.++|+ +|.|.||.|. +..+ .....+||||||+||||++|+++++..+
T Consensus 87 -----------~~~Gd------~v~i~gp~gg~F~~~-~~~~~~vlIAgGtGIaP~~s~l~~~~~~-------------- 134 (245)
T cd06200 87 -----------APIGA------SVALRLRENPGFHLP-DDGRPLILIGNGTGLAGLRSHLRARARA-------------- 134 (245)
T ss_pred -----------CCCCC------EEEEEecCCCcccCC-CCCCCEEEEecCcChHHHHHHHHHHHhc--------------
Confidence 23677 8999998664 4332 2346799999999999999999988643
Q ss_pred CCCCcCCCCCCCccceEEEEEEeCCCC-chhHHHHHHHHHHhhcCCCcEEEEEeee
Q 002711 740 GGATKNSKKKPFATKRAYFYWVTREQG-SFEWFRGVMNEVAEYDQDGVIELHNYCT 794 (889)
Q Consensus 740 ~~~~~~~~~~~~~~~rv~~~W~~R~~~-~~~wf~~~l~el~~~~~~~~i~l~~y~T 794 (889)
...++++++++|+.+ ++ .|.+++.++++.. ....++..++
T Consensus 135 ------------~~~~~~l~~g~r~~~~d~-~~~~el~~~~~~~--~~~~~~~~~s 175 (245)
T cd06200 135 ------------GRHRNWLLFGERQAAHDF-FCREELEAWQAAG--HLARLDLAFS 175 (245)
T ss_pred ------------cCCCeEEEEecCCccccH-hHHHHHHHHHHCC--CcceEEEEEc
Confidence 124688999999985 54 5788888876543 3444555444
No 58
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.86 E-value=1.2e-20 Score=206.98 Aligned_cols=221 Identities=14% Similarity=0.264 Sum_probs=152.3
Q ss_pred hccccEEEEEEEEecCCEEEEEEecCC---CCccCCccEEEEEEcCCC----CCcccceeeeecCC-CCceEEEEEec--
Q 002711 573 SGYKSVRILKVAVYPGNVLALQMSKPQ---GFKYTSGQYIFVNCAAVS----QFQWHPFSITSAPG-DDYLSIHIRTL-- 642 (889)
Q Consensus 573 ~~~~~~~i~~v~~~~~~v~~l~~~~p~---~~~~~pGQyv~l~~p~is----~~e~HPFTIaSaP~-~~~l~l~Ir~~-- 642 (889)
..+..++|++++.+++++..+++..+. .+.|+||||+.|+++.-. ...+||||++|.|. ++.++|+||..
T Consensus 31 ~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~~ 110 (300)
T PTZ00319 31 DMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYFK 110 (300)
T ss_pred CceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEecc
Confidence 345678899999999999999997643 267999999999997432 14689999999885 57899999986
Q ss_pred ---------CcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCC---------------C
Q 002711 643 ---------GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDY---------------K 698 (889)
Q Consensus 643 ---------G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~---------------~ 698 (889)
|..|+.|. .+++|+ .|.|.||+|.+...- .
T Consensus 111 ~~~~~~~~~G~~S~~L~--------------------~l~~Gd------~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~ 164 (300)
T PTZ00319 111 GVHPSFPNGGRLSQHLY--------------------HMKLGD------KIEMRGPVGKFEYLGNGTYTVHKGKGGLKTM 164 (300)
T ss_pred CCCCCCCCCCChhhhhh--------------------cCCCCC------EEEEEccceeeEecCCcceeecccccccccc
Confidence 66666663 234787 899999999863210 1
Q ss_pred CCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHH
Q 002711 699 DYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEV 778 (889)
Q Consensus 699 ~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el 778 (889)
+.+.++|||||+||||++|+++.++.+.. ..++++|+|++|+.+++ .|.++|.++
T Consensus 165 ~~~~illIAgGtGIaP~~sml~~l~~~~~------------------------~~~~i~liyg~r~~~dl-~~~~eL~~~ 219 (300)
T PTZ00319 165 HVDAFAMIAGGTGITPMLQIIHAIKKNKE------------------------DRTKVFLVYANQTEDDI-LLRKELDEA 219 (300)
T ss_pred ccceEEEEecCcccCHHHHHHHHHHhCCC------------------------CCceEEEEEecCCHHHh-hHHHHHHHH
Confidence 23579999999999999999999875311 13589999999999987 466777664
Q ss_pred HhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCC-----CCeE
Q 002711 779 AEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHT-----DERV 853 (889)
Q Consensus 779 ~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~-----~~~v 853 (889)
++ ...+.++..+++..... ..+ +.||-+- .++++...... ..+.
T Consensus 220 ~~---~~~~~~~~~~~~~~~~~----------------------~~~-----~~G~v~~-~~l~~~~~~~~~~~~~~~~~ 268 (300)
T PTZ00319 220 AK---DPRFHVWYTLDREATPE----------------------WKY-----GTGYVDE-EMLRAHLPVPDPQNSGIKKV 268 (300)
T ss_pred hh---CCCEEEEEEECCCCCCC----------------------ccc-----ccceeCH-HHHHhhcCCccccccccCCe
Confidence 32 24577766555421100 001 1244442 23333222110 1246
Q ss_pred EEEEeCChhHHH-HHHHHHHhhh
Q 002711 854 GVFYCGAPGLTG-ELRRLSQDFS 875 (889)
Q Consensus 854 ~V~~CGP~~m~~-~vr~~~~~~~ 875 (889)
.||+|||++|++ .+++...+..
T Consensus 269 ~vyiCGp~~mv~~~~~~~L~~~G 291 (300)
T PTZ00319 269 MALMCGPPPMLQMAVKPNLEKIG 291 (300)
T ss_pred EEEEECCHHHHHHHHHHHHHHcC
Confidence 799999999998 5677776654
No 59
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.85 E-value=4.9e-20 Score=205.43 Aligned_cols=227 Identities=15% Similarity=0.205 Sum_probs=144.5
Q ss_pred CCEEEEEEecCCCCccCCccEEEEEEcCCC----CCcccceeeeecCC-----CCceEEEEEecCcchHHHHHHHhhccC
Q 002711 588 GNVLALQMSKPQGFKYTSGQYIFVNCAAVS----QFQWHPFSITSAPG-----DDYLSIHIRTLGDWTSQLKSIFAKVCQ 658 (889)
Q Consensus 588 ~~v~~l~~~~p~~~~~~pGQyv~l~~p~is----~~e~HPFTIaSaP~-----~~~l~l~Ir~~G~wT~~L~~~~~~~~~ 658 (889)
+++.+|++..+..+.|+||||+.|.+|... +..++||||+|+|. ++.++|+||..-.-+ ..-.
T Consensus 108 ~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~--------~~g~ 179 (367)
T PLN03115 108 GETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN--------DQGE 179 (367)
T ss_pred CceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEEeec--------CCCc
Confidence 489999998877899999999999987532 34578999999983 358999999740000 0000
Q ss_pred CCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCC-CCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccc
Q 002711 659 PPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQD-YKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGIT 737 (889)
Q Consensus 659 ~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~-~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~ 737 (889)
.+.|..|++|. ++++|+ .|.|.||+|.+... ......+||||||+||||++|+|++++......
T Consensus 180 ~~~G~~S~~L~-~Lk~Gd------~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~-------- 244 (367)
T PLN03115 180 IVKGVCSNFLC-DLKPGA------EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDD-------- 244 (367)
T ss_pred cCCeehHhhHh-hCCCcC------EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhcccc--------
Confidence 01222333443 245788 89999999986422 123347999999999999999999876431100
Q ss_pred cCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhccc
Q 002711 738 EDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAK 817 (889)
Q Consensus 738 ~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~ 817 (889)
..-...++|+|++|+.+++ +|.++|+++++... .+++++..+++..+..
T Consensus 245 ------------~~~~~~v~Lf~G~R~~~dl-ly~dELe~l~~~~p-~~f~v~~a~SR~~~~~----------------- 293 (367)
T PLN03115 245 ------------YKFNGLAWLFLGVPTSSSL-LYKEEFEKMKEKAP-ENFRLDFAVSREQTNA----------------- 293 (367)
T ss_pred ------------ccCCCcEEEEEccCCHHHh-hHHHHHHHHHHhCC-CCEEEEEEEcCCCccc-----------------
Confidence 0013579999999999876 68888888766432 3677777666431110
Q ss_pred CCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcC
Q 002711 818 NGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRK 877 (889)
Q Consensus 818 ~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~ 877 (889)
.|.+..++ .+ +.+..+++.+.-+.....||+|||++|.+.|.++..++...
T Consensus 294 ------~G~kgyVq-d~--i~e~~e~l~~~l~~~~~~vYiCGp~~M~~~V~~~l~~l~~~ 344 (367)
T PLN03115 294 ------KGEKMYIQ-TR--MAEYAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLAAK 344 (367)
T ss_pred ------CCcceeeh-hH--HHHHHHHHHhhcccCCeEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 11110110 00 01111111111112245799999999999999888776543
No 60
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.85 E-value=9.8e-20 Score=198.99 Aligned_cols=212 Identities=16% Similarity=0.250 Sum_probs=146.8
Q ss_pred ccccEEEEEEEEec----CCEEEEEEecCC-------CCccCCccEEEEEEcCCCCCcccceeeeecCCCCceEEEEEe-
Q 002711 574 GYKSVRILKVAVYP----GNVLALQMSKPQ-------GFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRT- 641 (889)
Q Consensus 574 ~~~~~~i~~v~~~~----~~v~~l~~~~p~-------~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~~~l~l~Ir~- 641 (889)
.+.++++++.+.++ .++..++|..|. ...|+||||+.|..+.. ...|||||+|+|+++.+.|+||.
T Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~--~~~R~YSias~p~~g~l~l~Vk~~ 121 (289)
T cd06201 44 RTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGS--DVPRFYSLASSSSDGFLEICVRKH 121 (289)
T ss_pred CccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCC--CCCceEecCCCCCCCeEEEEEEeC
Confidence 45678899988887 589999998775 46799999999986543 35799999999988899999997
Q ss_pred -cCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEe-CCCCCCCCCCCCCCEEEEEEcCcchhhHHHHH
Q 002711 642 -LGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLID-GPYGAPAQDYKDYDVLLLVGLGIGATPLISII 719 (889)
Q Consensus 642 -~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vd-GPYG~~~~~~~~~~~vllVagGiGITP~lsil 719 (889)
.|..|+.|.+ + ++|+ .|.+. +|+|.+..+ ...+.++|||||+||||++|++
T Consensus 122 ~~G~~S~~L~~-l-------------------~~Gd------~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l 174 (289)
T cd06201 122 PGGLCSGYLHG-L-------------------KPGD------TIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFI 174 (289)
T ss_pred CCccchhhHhh-C-------------------CCcC------EEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHH
Confidence 4667777754 2 3677 77776 578887643 3446799999999999999999
Q ss_pred HHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccC
Q 002711 720 KDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEE 799 (889)
Q Consensus 720 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~ 799 (889)
++.. ..++++|+|++|+.++-..|.++|+++++.. ..+.++..+++....
T Consensus 175 ~~~~----------------------------~~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~--~~~~~~~~~s~~~~~ 224 (289)
T cd06201 175 RANA----------------------------ARRPMHLYWGGRDPASDFLYEDELDQYLADG--RLTQLHTAFSRTPDG 224 (289)
T ss_pred Hhhh----------------------------ccCCEEEEEEecCcccchHHHHHHHHHHHcC--CCceEEEEECCCCCc
Confidence 8641 1357999999999853236888888876643 234444433321100
Q ss_pred CChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhc
Q 002711 800 GDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSR 876 (889)
Q Consensus 800 ~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 876 (889)
+- + ....|-+...+ ..... ....||+|||++|++.+++.+.+...
T Consensus 225 g~---------------------v------~~~l~~~~~~l-~~~~~----~~~~vyiCGp~~M~~~v~~~L~~i~~ 269 (289)
T cd06201 225 AY---------------------V------QDRLRADAERL-RRLIE----DGAQIMVCGSRAMAQGVAAVLEEILA 269 (289)
T ss_pred cc---------------------c------hhHHHHhHHHH-HHHHH----CCcEEEEECCHHHHHHHHHHHHHHHH
Confidence 00 0 00001111111 11111 12469999999999999998887654
No 61
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.84 E-value=2.2e-19 Score=192.14 Aligned_cols=204 Identities=24% Similarity=0.394 Sum_probs=149.2
Q ss_pred cEEEEEEEEecCCEEEEEEecCCC-CccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEe--cCcchHHHHHH
Q 002711 577 SVRILKVAVYPGNVLALQMSKPQG-FKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRT--LGDWTSQLKSI 652 (889)
Q Consensus 577 ~~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~--~G~wT~~L~~~ 652 (889)
..+|.+++.+++++..+.+..|.. +.++||||+.|+.|. ....||||+|+|++ +.+.++|+. .|-.|+.+...
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhc
Confidence 368899999999999999987654 689999999999998 48999999999974 555555554 79999998765
Q ss_pred HhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhc
Q 002711 653 FAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEI 732 (889)
Q Consensus 653 ~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~ 732 (889)
. +|+ .+.|.||||.+...-.....+++||||+|++|+.++++++..+.
T Consensus 86 k--------------------~gd------~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~------ 133 (252)
T COG0543 86 K--------------------EGD------KIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG------ 133 (252)
T ss_pred c--------------------CCC------EEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC------
Confidence 2 566 79999999998743323345999999999999999999987541
Q ss_pred ccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHh
Q 002711 733 EEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQS 812 (889)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~ 812 (889)
...+|+++|..|+..++ .+.+++.++.+. +++. +|.. +.
T Consensus 134 -------------------~~~~V~~~~G~~~~~dl-~~~~el~~~~~~------~~~~-~~~~---~~----------- 172 (252)
T COG0543 134 -------------------DANKVTLLYGARTAKDL-LLLDELEELAEK------EVHP-VTDD---GW----------- 172 (252)
T ss_pred -------------------CCceEEEEEeccChhhc-ccHHHHHHhhcC------cEEE-EECC---CC-----------
Confidence 14789999999999987 456666666532 3333 2321 00
Q ss_pred hhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhc
Q 002711 813 IHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSR 876 (889)
Q Consensus 813 l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 876 (889)
.| ..|... .+++++.... +...||+||||.|++.+++...+...
T Consensus 173 -----------~G-----~~G~v~-~~~~~~~~~~---~~~~v~~cGp~~M~~~v~~~~~~~g~ 216 (252)
T COG0543 173 -----------KG-----RKGFVT-TDVLKELLDL---EVDDVYICGPPAMVKAVREKLKEYGV 216 (252)
T ss_pred -----------Cc-----cCccee-HHHHhhhccc---cCCEEEEECCHHHHHHHHHHHHhcCC
Confidence 01 001110 2334443322 23479999999999999999998864
No 62
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.84 E-value=2e-19 Score=205.17 Aligned_cols=155 Identities=12% Similarity=0.249 Sum_probs=117.1
Q ss_pred cEEEEEEEEec-----CCEEEEEEecCC-CCccCCccEEEEEEcCC----CCCcccceeeeecCCC-----CceEEEEEe
Q 002711 577 SVRILKVAVYP-----GNVLALQMSKPQ-GFKYTSGQYIFVNCAAV----SQFQWHPFSITSAPGD-----DYLSIHIRT 641 (889)
Q Consensus 577 ~~~i~~v~~~~-----~~v~~l~~~~p~-~~~~~pGQyv~l~~p~i----s~~e~HPFTIaSaP~~-----~~l~l~Ir~ 641 (889)
..+|+.++.+. ++|.+|++..+. .+.|+||||+.|.+|.. .+..++||||+|+|++ +.++|+||.
T Consensus 144 ~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~ 223 (411)
T TIGR03224 144 TATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKR 223 (411)
T ss_pred EEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEE
Confidence 46778888884 499999998765 58999999999998853 2346899999998743 469999998
Q ss_pred c----------CcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCC-CCCCCCEEEEEEcCc
Q 002711 642 L----------GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQ-DYKDYDVLLLVGLGI 710 (889)
Q Consensus 642 ~----------G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~-~~~~~~~vllVagGi 710 (889)
. |-.|+.|.+ +++|+ +|.|.||||.... +-.....+||||||+
T Consensus 224 v~~~~~g~~~~G~~S~~L~~--------------------lk~Gd------~v~v~GP~G~~f~lp~~~~~~lllIagGt 277 (411)
T TIGR03224 224 VTTDHQGNAVRGVASNYLCD--------------------LKKGD------KVQVIGPFGSTFLMPNHPESSIMMICTGT 277 (411)
T ss_pred EEecCCCCcCcccchhHHhc--------------------CCCcC------EEEEEeccCCcccCCCCCCCCEEEEeccc
Confidence 6 445555543 34787 8999999998432 212235799999999
Q ss_pred chhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHh
Q 002711 711 GATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAE 780 (889)
Q Consensus 711 GITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~ 780 (889)
||||++|+++++....... ...+++|+|++|+.+++ .|.++|.++.+
T Consensus 278 GIAP~~s~l~~~~~~~~~~----------------------~~~~v~L~~G~Rt~~dl-~y~~eL~~l~~ 324 (411)
T TIGR03224 278 GSAPMRAMTERRRRRRDHG----------------------EGGKLMLFFGARTKEEL-PYFGPLQKLPK 324 (411)
T ss_pred CcHHHHHHHHHHHHHhhcC----------------------CCCCEEEEEecCccccc-hHHHHHHHHHh
Confidence 9999999999987542211 24689999999999987 46666776654
No 63
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.83 E-value=2e-22 Score=186.06 Aligned_cols=100 Identities=37% Similarity=0.818 Sum_probs=7.3
Q ss_pred ccEEEEEEEEecCCEEEEEEecCCC-CccCCccEEEEEEcCCC--CCcccceeeeecCCCCceEEEEEecCcchHHHHHH
Q 002711 576 KSVRILKVAVYPGNVLALQMSKPQG-FKYTSGQYIFVNCAAVS--QFQWHPFSITSAPGDDYLSIHIRTLGDWTSQLKSI 652 (889)
Q Consensus 576 ~~~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~is--~~e~HPFTIaSaP~~~~l~l~Ir~~G~wT~~L~~~ 652 (889)
.++++++++.+++++++|++++|.. ++|+||||+||++|.++ .||||||||+|+|+++.++++||..||||++|++.
T Consensus 2 ~~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~~~i~l~ik~~g~~T~~L~~~ 81 (105)
T PF08022_consen 2 FNVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPEDNSITLIIKARGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCCCCEEEEEEEeCCCchHHHHHH
Confidence 4678889999999999999999987 99999999999999999 56999999999999999999999999999999988
Q ss_pred HhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCC
Q 002711 653 FAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAP 693 (889)
Q Consensus 653 ~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~ 693 (889)
+.+. .......+++.||||||++
T Consensus 82 ~~~~------------------~~~~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 82 LSES------------------PSKQGNRLRVFIDGPYGAP 104 (105)
T ss_dssp ---------------------------------TTSTTSHH
T ss_pred Hhhh------------------cccCCCceEEEEECCCCCC
Confidence 7431 0011234589999999975
No 64
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.83 E-value=2.4e-19 Score=190.44 Aligned_cols=222 Identities=16% Similarity=0.277 Sum_probs=171.6
Q ss_pred ccccEEEEEEEEecCCEEEEEEecCC---CCccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEec--CcchH
Q 002711 574 GYKSVRILKVAVYPGNVLALQMSKPQ---GFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTL--GDWTS 647 (889)
Q Consensus 574 ~~~~~~i~~v~~~~~~v~~l~~~~p~---~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~--G~wT~ 647 (889)
.|..+++.+.+.++.|+..+.|..|. .+....|||+++..|-....-.+|||-.|.+.+ +++.+.||.. |-.|+
T Consensus 50 ~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS~ 129 (286)
T KOG0534|consen 50 SYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMSQ 129 (286)
T ss_pred ceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCcccH
Confidence 36778889999999999888888773 377899999999999776678999999999877 7999999987 66777
Q ss_pred HHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHh
Q 002711 648 QLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIK 727 (889)
Q Consensus 648 ~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~ 727 (889)
.|.++ +.|+ .|.+.||.|....+-..++++.|||||+||||+++++++++.+..
T Consensus 130 ~l~~L--------------------kiGd------~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~ 183 (286)
T KOG0534|consen 130 HLDSL--------------------KIGD------TVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPE 183 (286)
T ss_pred HHhcC--------------------CCCC------EEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCC
Confidence 66543 3677 899999999976554458899999999999999999999976532
Q ss_pred hhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHH
Q 002711 728 QQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALI 807 (889)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~ 807 (889)
...++++++++++++++ |++++|+++++.+. ..+.++.++++..+..+
T Consensus 184 ------------------------d~tki~lly~N~te~DI-Llr~eL~~la~~~p-~rf~~~y~v~~~~~~w~------ 231 (286)
T KOG0534|consen 184 ------------------------DTTKISLLYANKTEDDI-LLREELEELASKYP-ERFKVWYVVDQPPEIWD------ 231 (286)
T ss_pred ------------------------CCcEEEEEEecCCcccc-chHHHHHHHHhhCc-ceEEEEEEEcCCccccc------
Confidence 26789999999999997 89999999998775 37888887765432111
Q ss_pred HHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHH-HHHhhhc
Q 002711 808 TMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRR-LSQDFSR 876 (889)
Q Consensus 808 ~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~-~~~~~~~ 876 (889)
..-|+++-+.+-..+....++ .+-|++||||+|++.++. ....+..
T Consensus 232 ----------------------~~~g~It~~~i~~~l~~~~~~-~~~~liCGPp~m~~~~~~~~le~Lg~ 278 (286)
T KOG0534|consen 232 ----------------------GSVGFITKDLIKEHLPPPKEG-ETLVLICGPPPMINGAAQGNLEKLGY 278 (286)
T ss_pred ----------------------CccCccCHHHHHhhCCCCCCC-CeEEEEECCHHHHhHHHHHHHHhcCC
Confidence 112566655554444444443 688999999999985444 4443443
No 65
>PLN02252 nitrate reductase [NADPH]
Probab=99.83 E-value=2.2e-19 Score=219.79 Aligned_cols=224 Identities=14% Similarity=0.237 Sum_probs=160.7
Q ss_pred hccccEEEEEEEEecCCEEEEEEecCCC---CccCCccEEEEEEcCCCCCcccceeeeecCC-CCceEEEEEec------
Q 002711 573 SGYKSVRILKVAVYPGNVLALQMSKPQG---FKYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRTL------ 642 (889)
Q Consensus 573 ~~~~~~~i~~v~~~~~~v~~l~~~~p~~---~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~-~~~l~l~Ir~~------ 642 (889)
..+..++|++++.+++++..++|..|.. +.++||||++|.++.-.....||||++|.|+ ++++.|+||..
T Consensus 632 ~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~~ 711 (888)
T PLN02252 632 REKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHP 711 (888)
T ss_pred CceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccccC
Confidence 3467789999999999999999987754 5789999999998644445689999999986 47899999986
Q ss_pred -----CcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCC--------C--CCCCCEEEEEE
Q 002711 643 -----GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQ--------D--YKDYDVLLLVG 707 (889)
Q Consensus 643 -----G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~--------~--~~~~~~vllVa 707 (889)
|..|+.|. .+++|+ .|.|.||+|.+.. + ....+.++|||
T Consensus 712 ~~p~gG~~S~~L~--------------------~L~vGd------~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIA 765 (888)
T PLN02252 712 KFPNGGLMSQYLD--------------------SLPIGD------TIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLA 765 (888)
T ss_pred ccCCCCchhhHHh--------------------cCCCCC------EEEEecCccceeecccceeeeccccccCceEEEEe
Confidence 44555542 244787 8999999998521 1 11346899999
Q ss_pred cCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcE
Q 002711 708 LGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVI 787 (889)
Q Consensus 708 gGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i 787 (889)
||+||||++++|++++.+.. ..++++|+|++|+.+++ .|.++|+++++... ..+
T Consensus 766 GGsGITPi~silr~ll~~~~------------------------d~t~i~Liyg~Rt~~Di-l~~eEL~~la~~~p-~~~ 819 (888)
T PLN02252 766 GGTGITPMYQVIQAILRDPE------------------------DKTEMSLVYANRTEDDI-LLREELDRWAAEHP-DRL 819 (888)
T ss_pred cceehhHHHHHHHHHHhccC------------------------CCCcEEEEEEECCHHHh-hHHHHHHHHHHhCC-CCE
Confidence 99999999999999875411 14679999999999987 68888988876542 467
Q ss_pred EEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHH-
Q 002711 788 ELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGE- 866 (889)
Q Consensus 788 ~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~- 866 (889)
.++..+|+...++ ..| ..||.+- .++++..... .....||+|||++|++.
T Consensus 820 ~v~~vls~~~~~~----------------------w~g-----~~GrV~~-~ll~~~l~~~-~~~~~vyiCGPp~Mi~~a 870 (888)
T PLN02252 820 KVWYVVSQVKREG----------------------WKY-----SVGRVTE-AMLREHLPEG-GDETLALMCGPPPMIEFA 870 (888)
T ss_pred EEEEEecCCCcCC----------------------CCC-----cCCcCCH-HHHHHhcccC-CCCeEEEEeCCHHHHHHH
Confidence 7776555321000 011 1256552 3444443221 23467999999999995
Q ss_pred HHHHHHhhhcC
Q 002711 867 LRRLSQDFSRK 877 (889)
Q Consensus 867 vr~~~~~~~~~ 877 (889)
++..+.+...+
T Consensus 871 v~~~L~~~G~~ 881 (888)
T PLN02252 871 CQPNLEKMGYD 881 (888)
T ss_pred HHHHHHHcCCC
Confidence 77777766543
No 66
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.79 E-value=6.7e-19 Score=171.00 Aligned_cols=141 Identities=21% Similarity=0.400 Sum_probs=123.2
Q ss_pred cccCcccHHHHHHHHHccc--CCCccchhhhcccc---cCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc-c
Q 002711 138 KNVGTEGWGEVEKRFDELA--VDGMLPKSSFGQCI---GMNESKDFASELFDALARRRGLTSSSITKSELRGFWEQIT-D 211 (889)
Q Consensus 138 ~~~~~~~~~~l~~~F~~ld--~dG~Ls~~ef~~~l---g~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~-~ 211 (889)
.+++.++++++++.|..+| ++|.|+++||..++ |...++.++.+||..++. + .|.|+|.||+.++.... .
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~--~--~~~idf~~Fl~~ms~~~~~ 87 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA--G--NETVDFPEFLTVMSVKLKR 87 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC--C--CCccCHHHHHHHHHHHhcc
Confidence 4568899999999999999 79999999999987 888889999999997665 2 49999999999998854 6
Q ss_pred CChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 212 QSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 212 ~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
...+++++.||+.||+|+||+|+.+||+.+++... .+++ ++.++.+++++|+|+||+|+|+||.+++...|
T Consensus 88 ~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg--e~~~------deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 88 GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLG--ERLS------DEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc--ccCC------HHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 67799999999999999999999999999997322 2233 67788899999999999999999999998765
No 67
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.79 E-value=5.1e-18 Score=210.70 Aligned_cols=214 Identities=14% Similarity=0.221 Sum_probs=148.4
Q ss_pred hccccEEEEEEEEecCCEEEEEEecCCC-CccCCccEEEEEEcCCCCCcccceeeeecCC-CCceEEEEEecCcchHHHH
Q 002711 573 SGYKSVRILKVAVYPGNVLALQMSKPQG-FKYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRTLGDWTSQLK 650 (889)
Q Consensus 573 ~~~~~~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~-~~~l~l~Ir~~G~wT~~L~ 650 (889)
..+..++|++++.+++++..+++..|.. ..++||||+.|.++... +++||||+|.|. ++.++|+||..|..|..|.
T Consensus 646 ~~~~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~~g~i~l~Vk~vG~~T~~L~ 723 (944)
T PRK12779 646 LGQIPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAEKGTIDLVVQGMGTSSLEIN 723 (944)
T ss_pred ccceEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCCCCEEEEEEEeeccHHHHHh
Confidence 3467789999999999999999987754 57999999999986433 679999999874 6789999999998887664
Q ss_pred HHHhhccCCCCCCCccccccccccCCCCCCccEEE-EeCCCCCCCCC--CCCCCEEEEEEcCcchhhHHHHHHHHHHHHh
Q 002711 651 SIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLL-IDGPYGAPAQD--YKDYDVLLLVGLGIGATPLISIIKDVLNNIK 727 (889)
Q Consensus 651 ~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~-vdGPYG~~~~~--~~~~~~vllVagGiGITP~lsil~~l~~~~~ 727 (889)
++ ++|+ .+. |.||+|.+... ....+.+||||||+||||++|+++.++..
T Consensus 724 ~l--------------------k~Gd------~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~-- 775 (944)
T PRK12779 724 RM--------------------AIGD------AFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRL-- 775 (944)
T ss_pred cC--------------------CCcC------EEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHC--
Confidence 32 2677 785 99999997421 11235899999999999999999987542
Q ss_pred hhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHH---HHHHhhcCCCcEEEEEeeeccccCCChhh
Q 002711 728 QQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVM---NEVAEYDQDGVIELHNYCTSVYEEGDARS 804 (889)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l---~el~~~~~~~~i~l~~y~T~~~~~~d~~s 804 (889)
..+|+++|++|+.+++. +.+.+ +++++... ..++++ +|.. .+.
T Consensus 776 -------------------------g~~V~li~G~Rs~edl~-~~del~~L~~la~~~~-~~~~v~--~ttd--dgs--- 821 (944)
T PRK12779 776 -------------------------GNHVTLISGFRAKEFLF-WTGDDERVGKLKAEFG-DQLDVI--YTTN--DGS--- 821 (944)
T ss_pred -------------------------CCCEEEEEEeCCHHHhh-hHHHHHHHHHHHHHcC-CCeEEE--EEec--CCC---
Confidence 24699999999998764 44444 44443322 234443 3321 010
Q ss_pred HHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCC---C-CeEEEEEeCChhHHHHHHHHHHhhhc
Q 002711 805 ALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHT---D-ERVGVFYCGAPGLTGELRRLSQDFSR 876 (889)
Q Consensus 805 ~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~---~-~~v~V~~CGP~~m~~~vr~~~~~~~~ 876 (889)
.| ..|+.+ +.+.++..... + ....||+|||+.|++.+.+.+.+.+.
T Consensus 822 -------------------~G-----~~G~Vt--~~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~~~l~~~Gv 871 (944)
T PRK12779 822 -------------------FG-----VKGFVT--GPLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVSDLTKPYGV 871 (944)
T ss_pred -------------------CC-----CccccC--hHHHHHHHhcccccccCCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 01 113332 22333322221 0 12469999999999999999877643
No 68
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.78 E-value=5.1e-18 Score=208.88 Aligned_cols=200 Identities=19% Similarity=0.324 Sum_probs=145.2
Q ss_pred EEEEEEEEecCCEEEEEEecCCC-CccCCccEEEEEEcCCCCCcccceeeeecCC-CCceEEEEEecCcchHHHHHHHhh
Q 002711 578 VRILKVAVYPGNVLALQMSKPQG-FKYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRTLGDWTSQLKSIFAK 655 (889)
Q Consensus 578 ~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~-~~~l~l~Ir~~G~wT~~L~~~~~~ 655 (889)
++|+++..+.+++..|++..|.. ..++||||+.|+++.. .++|||||+|+|. ++.++|+||..|..|..|.++
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~--~~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l--- 76 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEK--GERIPLTIADADPEKGTITLVIQEVGLSTTKLCEL--- 76 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCC--CCeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcC---
Confidence 46788888999999999987753 5799999999999754 3679999999874 578999999999999998642
Q ss_pred ccCCCCCCCccccccccccCCCCCCccEE-EEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhccc
Q 002711 656 VCQPPSVDQSGLLRADIGQADNRPRIPKL-LIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEE 734 (889)
Q Consensus 656 ~~~~~~~~~s~~l~~~~~~g~~~~~~~~v-~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~ 734 (889)
++|+ .+ .|.||||.+... ...+.++|||||+||||++++++++..+
T Consensus 77 -----------------~~Gd------~v~~v~GP~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~--------- 123 (752)
T PRK12778 77 -----------------NEGD------YITDVVGPLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAA--------- 123 (752)
T ss_pred -----------------CCCC------EeCeEeCCCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHC---------
Confidence 2677 78 799999998643 3457899999999999999999998643
Q ss_pred ccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhh
Q 002711 735 GITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIH 814 (889)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~ 814 (889)
..+++++|+.|+.+++. |.+++.+++. .+ .+.|. .+.
T Consensus 124 ------------------~~~v~l~~g~r~~~~l~-~~~el~~~~~-----~~---~~~t~---dg~------------- 160 (752)
T PRK12778 124 ------------------GNRVITILGGRSKELII-LEDEMRESSD-----EV---IIMTD---DGS------------- 160 (752)
T ss_pred ------------------CCeEEEEeccCCHHHhh-hHHHHHhhcC-----eE---EEEEC---CCC-------------
Confidence 24799999999999874 5565655432 11 11221 010
Q ss_pred cccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhh
Q 002711 815 HAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFS 875 (889)
Q Consensus 815 ~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 875 (889)
.| +.|+ ..+++.+..... .....||+|||+.|++.+.+.+.+..
T Consensus 161 ---------~g-----~~G~--v~~~l~~~~~~~-~~~~~vy~CGP~~M~~~v~~~l~~~g 204 (752)
T PRK12778 161 ---------YG-----RKGL--VTDGLEEVIKRE-TKVDKVFAIGPAIMMKFVCLLTKKYG 204 (752)
T ss_pred ---------CC-----Cccc--HHHHHHHHhhcC-CCCCEEEEECCHHHHHHHHHHHHHcC
Confidence 01 0122 123344433221 11235999999999999999887754
No 69
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.78 E-value=1.1e-17 Score=177.73 Aligned_cols=133 Identities=15% Similarity=0.140 Sum_probs=106.1
Q ss_pred EEEEEEecCCEEEEEEecCCC---CccCCccEEEEEEcCCC-------------------CCcccceeeeecC-CCCceE
Q 002711 580 ILKVAVYPGNVLALQMSKPQG---FKYTSGQYIFVNCAAVS-------------------QFQWHPFSITSAP-GDDYLS 636 (889)
Q Consensus 580 i~~v~~~~~~v~~l~~~~p~~---~~~~pGQyv~l~~p~is-------------------~~e~HPFTIaSaP-~~~~l~ 636 (889)
|++++.+++++.+|+|+.|.. ..|.||||+.|.+|... ...+++|||++.| +++++.
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 356778889999999988764 67899999999998643 4678999999986 578899
Q ss_pred EEEEec---CcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchh
Q 002711 637 IHIRTL---GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGAT 713 (889)
Q Consensus 637 l~Ir~~---G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGIT 713 (889)
|.|+.. |..|+.|.+ +++|+ .|.|.||+|.+... ...+.+||||||+|||
T Consensus 81 ~~v~~~~~~G~~s~~l~~--------------------l~~Gd------~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~ 133 (235)
T cd06193 81 IDFVLHGDEGPASRWAAS--------------------AQPGD------TLGIAGPGGSFLPP-PDADWYLLAGDETALP 133 (235)
T ss_pred EEEEeCCCCCchHHHHhh--------------------CCCCC------EEEEECCCCCCCCC-CCcceEEEEeccchHH
Confidence 999877 335555532 23687 89999999998653 2456899999999999
Q ss_pred hHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCc
Q 002711 714 PLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGS 767 (889)
Q Consensus 714 P~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~ 767 (889)
|+++|++.+.. ..++++++.+|+.++
T Consensus 134 p~~~il~~~~~----------------------------~~~~~~~~~~~~~~d 159 (235)
T cd06193 134 AIAAILEELPA----------------------------DARGTALIEVPDAAD 159 (235)
T ss_pred HHHHHHHhCCC----------------------------CCeEEEEEEECCHHH
Confidence 99999997621 257999999999854
No 70
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.76 E-value=4.1e-18 Score=171.36 Aligned_cols=148 Identities=20% Similarity=0.293 Sum_probs=126.1
Q ss_pred ccCcccHHHHHHHHHccc---CCCccchhhhcccccCCCCHHHHHHHHHHHHhhCCCCCCc-ccHHHHHHHHHHhccCC-
Q 002711 139 NVGTEGWGEVEKRFDELA---VDGMLPKSSFGQCIGMNESKDFASELFDALARRRGLTSSS-ITKSELRGFWEQITDQS- 213 (889)
Q Consensus 139 ~~~~~~~~~l~~~F~~ld---~dG~Ls~~ef~~~lg~~~~~~~~~~lf~~l~~~d~~~~G~-Id~~EF~~~~~~~~~~~- 213 (889)
..+.+|+..|..+|.+++ ++|.++++||..+.... .+.+.++|++.++...+ |. |+|+||+..+..+....
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~-~Np~~~rI~~~f~~~~~---~~~v~F~~Fv~~ls~f~~~~~ 101 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELA-LNPLADRIIDRFDTDGN---GDPVDFEEFVRLLSVFSPKAS 101 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHh-cCcHHHHHHHHHhccCC---CCccCHHHHHHHHhhhcCCcc
Confidence 356789999999999999 68999999999998543 45789999997665544 44 99999999999976554
Q ss_pred hHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCCC
Q 002711 214 FDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAPS 291 (889)
Q Consensus 214 ~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~ 291 (889)
.++|++.||++||.|+||+|+++||.+++......+... .+++.++.++.+|.++|.|+||+|+|+||.+.+.+.|.
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~ 178 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPD 178 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCcc
Confidence 456999999999999999999999999998654433332 67888999999999999999999999999999999884
No 71
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=99.76 E-value=6.5e-19 Score=153.68 Aligned_cols=99 Identities=71% Similarity=1.219 Sum_probs=77.3
Q ss_pred cccccchhHHHHhccccccccccCc-ccHHHHHHHHHcccCCCccchhhhcccccCCCCHHHHHHHHHHHHhhCCCCCCc
Q 002711 118 KVDRTKSGAARALKGLKFITKNVGT-EGWGEVEKRFDELAVDGMLPKSSFGQCIGMNESKDFASELFDALARRRGLTSSS 196 (889)
Q Consensus 118 ~~~~~~s~~~~al~~L~~i~~~~~~-~~~~~l~~~F~~ld~dG~Ls~~ef~~~lg~~~~~~~~~~lf~~l~~~d~~~~G~ 196 (889)
|++|++|+|++||||||||+++.+. ++|..|+++|++|+.||.|++++|.+|+||+++++|+.+||++|.+.++...+.
T Consensus 1 rldRt~S~A~~ALkGLrFIskt~~~~~~W~~VE~RFd~La~dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~~~ 80 (100)
T PF08414_consen 1 RLDRTKSGAQRALKGLRFISKTTGGADGWKEVEKRFDKLAKDGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKGDS 80 (100)
T ss_dssp -----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-BTTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--SSE
T ss_pred CCCcchhHHHHHHhcccceecCCCCccCHHHHHHHHHHhCcCCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCccCC
Confidence 5799999999999999999998754 589999999999999999999999999999999999999999999999988899
Q ss_pred ccHHHHHHHHHHhccCChHH
Q 002711 197 ITKSELRGFWEQITDQSFDA 216 (889)
Q Consensus 197 Id~~EF~~~~~~~~~~~~ee 216 (889)
|+.+|+.++|.++.++++|.
T Consensus 81 I~k~eL~efW~qisD~sFDs 100 (100)
T PF08414_consen 81 ITKDELKEFWEQISDQSFDS 100 (100)
T ss_dssp E-HHHHHHHHHHHH---HHH
T ss_pred cCHHHHHHHHHHhhccCCCC
Confidence 99999999999999988763
No 72
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.75 E-value=5e-17 Score=207.37 Aligned_cols=223 Identities=16% Similarity=0.197 Sum_probs=155.7
Q ss_pred ccccEEEEEEE---EecCCEEEEEEecCCC---CccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEec-Ccc
Q 002711 574 GYKSVRILKVA---VYPGNVLALQMSKPQG---FKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTL-GDW 645 (889)
Q Consensus 574 ~~~~~~i~~v~---~~~~~v~~l~~~~p~~---~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~-G~w 645 (889)
.|.++++.+++ .++.++..++|..|.. +.+.|||||.|+++.-..-.+++||++|.|++ +.+.|+||.. |..
T Consensus 913 ~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr~~~G~~ 992 (1167)
T PTZ00306 913 KWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARGDKGTL 992 (1167)
T ss_pred ceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEEcCCChh
Confidence 56678888876 4577888888877653 57999999999986433235799999999965 6799999874 678
Q ss_pred hHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCC----------CCCCCCCEEEEEEcCcchhhH
Q 002711 646 TSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPA----------QDYKDYDVLLLVGLGIGATPL 715 (889)
Q Consensus 646 T~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~----------~~~~~~~~vllVagGiGITP~ 715 (889)
|..|.+ + ++|+ .|.|.||+|... .+-...+.++|||||+||||+
T Consensus 993 S~~L~~-l-------------------~~Gd------~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~ 1046 (1167)
T PTZ00306 993 KEWISA-L-------------------RPGD------SVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPM 1046 (1167)
T ss_pred HHHHhh-C-------------------CCCC------EEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHH
Confidence 887743 2 3677 899999998421 111234689999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeec
Q 002711 716 ISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTS 795 (889)
Q Consensus 716 lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~ 795 (889)
+||+++++.+... ...++++|+|++|+.+++ +|.++|.++++... +.+.++..+++
T Consensus 1047 ~sml~~~l~~~~~----------------------~~~~~i~Llyg~r~~~dl-~~~~eL~~l~~~~~-~~f~~~~~ls~ 1102 (1167)
T PTZ00306 1047 LQIIRAALKKPYV----------------------DSIESIRLIYAAEDVSEL-TYRELLESYRKENP-GKFKCHFVLNN 1102 (1167)
T ss_pred HHHHHHHHhCccc----------------------CCCceEEEEEEeCCHHHh-hHHHHHHHHHHHCC-CCEEEEEEECC
Confidence 9999998754110 014689999999999997 68888888876432 35777765553
Q ss_pred cccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhh
Q 002711 796 VYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFS 875 (889)
Q Consensus 796 ~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 875 (889)
..+ . .. -..||.+- .++++.... +.....||+|||++|++.+++.+.+..
T Consensus 1103 ~~~-~----------------------w~-----~~~G~i~~-~~l~~~l~~-~~~~~~vyiCGP~~mv~~v~~~L~~~G 1152 (1167)
T PTZ00306 1103 PPE-G----------------------WT-----DGVGFVDR-ALLQSALQP-PSKDLLVAICGPPVMQRAVKADLLALG 1152 (1167)
T ss_pred CCc-c----------------------cC-----CCCCCCCH-HHHHHhcCC-CCCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 210 0 00 11245432 233333221 223467999999999999999988765
Q ss_pred c
Q 002711 876 R 876 (889)
Q Consensus 876 ~ 876 (889)
.
T Consensus 1153 ~ 1153 (1167)
T PTZ00306 1153 Y 1153 (1167)
T ss_pred C
Confidence 4
No 73
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.72 E-value=1.9e-16 Score=198.35 Aligned_cols=201 Identities=14% Similarity=0.257 Sum_probs=143.9
Q ss_pred EEEEEEEEecCCEEEEEEecCC-CCccCCccEEEEEEcCCCCCcccceeeeecC-CCCceEEEEEecCcchHHHHHHHhh
Q 002711 578 VRILKVAVYPGNVLALQMSKPQ-GFKYTSGQYIFVNCAAVSQFQWHPFSITSAP-GDDYLSIHIRTLGDWTSQLKSIFAK 655 (889)
Q Consensus 578 ~~i~~v~~~~~~v~~l~~~~p~-~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP-~~~~l~l~Ir~~G~wT~~L~~~~~~ 655 (889)
.+|++...+.+++..+++..|. ...++|||||.|+++.. .+.+||||++.+ +++.++|+|+..|..|+.|...+
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~--~errplSIa~~~~~~g~i~l~vk~vG~~T~~L~~~l-- 77 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEG--AERIPLTVADFDRKKGTITMVVQALGKTTREMMTKF-- 77 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCC--CeeEEEEecCcCCCCCEEEEEEEecCcHHHHHHhcC--
Confidence 3577888899999999998876 46799999999999753 367999999876 45789999999999999986433
Q ss_pred ccCCCCCCCccccccccccCCCCCCccEE-EEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhccc
Q 002711 656 VCQPPSVDQSGLLRADIGQADNRPRIPKL-LIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEE 734 (889)
Q Consensus 656 ~~~~~~~~~s~~l~~~~~~g~~~~~~~~v-~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~ 734 (889)
++|+ .+ .+.||+|.+.. ...++++|||||||||||++|+++.+...
T Consensus 78 -----------------k~Gd------~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~--------- 124 (1006)
T PRK12775 78 -----------------KAGD------TFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEA--------- 124 (1006)
T ss_pred -----------------CCCC------EEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhC---------
Confidence 2677 67 69999999753 33457899999999999999999987532
Q ss_pred ccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhh
Q 002711 735 GITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIH 814 (889)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~ 814 (889)
..+++++|+.|+.+.+ .+.++|.++.. .+ +++.. .+.
T Consensus 125 ------------------g~~v~li~g~R~~~~l-~~~del~~~~~-----~~----~v~td--dgs------------- 161 (1006)
T PRK12775 125 ------------------GARTTGIIGFRNKDLV-FWEDKFGKYCD-----DL----IVCTD--DGS------------- 161 (1006)
T ss_pred ------------------CCcEEEEEeCCChHHc-ccHHHHHhhcC-----cE----EEEEC--CCC-------------
Confidence 2469999999999875 45555544321 12 22211 000
Q ss_pred cccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhc
Q 002711 815 HAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSR 876 (889)
Q Consensus 815 ~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 876 (889)
.| +.|+ ..+.+.++..... .-.||+|||+.|++.+.+.++++..
T Consensus 162 ---------~G-----~~G~--vt~~l~~~l~~~~--~d~vy~CGP~~Mm~av~~~~~~~gi 205 (1006)
T PRK12775 162 ---------YG-----KPGF--VTAALKEVCEKDK--PDLVVAIGPLPMMNACVETTRPFGV 205 (1006)
T ss_pred ---------CC-----CCCC--hHHHHHHHhccCC--CCEEEEECCHHHHHHHHHHHHHCCC
Confidence 00 0122 2234444332211 1259999999999999999887654
No 74
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.67 E-value=3.6e-16 Score=154.43 Aligned_cols=137 Identities=19% Similarity=0.300 Sum_probs=111.4
Q ss_pred CcccHHHHHHHHHccc--CCCccchhhhcccc---cCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCC--
Q 002711 141 GTEGWGEVEKRFDELA--VDGMLPKSSFGQCI---GMNESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQS-- 213 (889)
Q Consensus 141 ~~~~~~~l~~~F~~ld--~dG~Ls~~ef~~~l---g~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~-- 213 (889)
+.++..++++.|+.+| ++|.|+.+||..++ |..+++.....+++. .|.+++|.|+++||+..+.......
T Consensus 3 ~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~---~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 3 SEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKE---IDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred CHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH---hCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 4566788999999999 89999999999987 666666666666663 4444469999999999987753322
Q ss_pred ---hHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 214 ---FDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 214 ---~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
..+.++.+|+.||+|+||+||.+||+.+|...... ++ ++.++.|++++|.|+||.|+|+||.+||..
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~--~~------~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK--LT------DEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc--CC------HHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 35699999999999999999999999999754332 22 566788999999999999999999999964
No 75
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.65 E-value=5.9e-16 Score=155.78 Aligned_cols=149 Identities=19% Similarity=0.240 Sum_probs=123.6
Q ss_pred cCcccHHHHHHHHHcccCCCccchhhhccccc----CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChH
Q 002711 140 VGTEGWGEVEKRFDELAVDGMLPKSSFGQCIG----MNESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFD 215 (889)
Q Consensus 140 ~~~~~~~~l~~~F~~ld~dG~Ls~~ef~~~lg----~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~e 215 (889)
-+..++....+-|..-..+|.++.++|.+.+. ...++.+++.+|..+|.+.+ |.|+|.||+.+++.+.++..+
T Consensus 23 f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~d---g~i~F~Efi~als~~~rGt~e 99 (193)
T KOG0044|consen 23 FSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKD---GTIDFLEFICALSLTSRGTLE 99 (193)
T ss_pred CCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCC---CCcCHHHHHHHHHHHcCCcHH
Confidence 35567777777787644899999999999873 34567899999997655444 999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcc---cchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCCC
Q 002711 216 ARLETFFDMVDKNLDGRITEEEVKEIIALSASAN---KLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAPS 291 (889)
Q Consensus 216 e~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~---~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~ 291 (889)
++++.+|++||.|+||+||++|+-++++...... ..+..++..++.++.+|+++|.|+||.||++||....+..|+
T Consensus 100 ekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~ 178 (193)
T KOG0044|consen 100 EKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPS 178 (193)
T ss_pred HHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHH
Confidence 9999999999999999999999999998532221 122334556888999999999999999999999999988774
No 76
>PTZ00184 calmodulin; Provisional
Probab=99.57 E-value=3e-14 Score=139.42 Aligned_cols=140 Identities=16% Similarity=0.321 Sum_probs=113.2
Q ss_pred ccccCcccHHHHHHHHHccc--CCCccchhhhcccc---cCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-c
Q 002711 137 TKNVGTEGWGEVEKRFDELA--VDGMLPKSSFGQCI---GMNESKDFASELFDALARRRGLTSSSITKSELRGFWEQI-T 210 (889)
Q Consensus 137 ~~~~~~~~~~~l~~~F~~ld--~dG~Ls~~ef~~~l---g~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~-~ 210 (889)
+.+++.++++.+++.|+.+| ++|.|+.+||..++ +.......+..+|..++.. ++|.|+|+||+.++... .
T Consensus 2 ~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~l~~~~~ 78 (149)
T PTZ00184 2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD---GNGTIDFPEFLTLMARKMK 78 (149)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcC---CCCcCcHHHHHHHHHHhcc
Confidence 45567788899999999999 89999999999876 4455666778888854433 34999999999998764 3
Q ss_pred cCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 002711 211 DQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLL 287 (889)
Q Consensus 211 ~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~ 287 (889)
....++.++.+|+.||+|++|+|+.+|+..++.... ..++ ++.++.+++.+|.|++|.|+|+||..+|.
T Consensus 79 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~--~~~~------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 79 DTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG--EKLT------DEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred CCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC--CCCC------HHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 455678899999999999999999999999997432 1222 44566799999999999999999999875
No 77
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.56 E-value=2.6e-14 Score=162.59 Aligned_cols=204 Identities=13% Similarity=0.165 Sum_probs=120.7
Q ss_pred cCCccEEEEEEcCCCCCcccceeeeecCC--CCceEEEEEecCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCC
Q 002711 603 YTSGQYIFVNCAAVSQFQWHPFSITSAPG--DDYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPR 680 (889)
Q Consensus 603 ~~pGQyv~l~~p~is~~e~HPFTIaSaP~--~~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~ 680 (889)
...||++-+. |. .+.+||||+|+|. ++.+.+.|+..-.-|.. . .....|..|+++. ++.+|+
T Consensus 147 ~~~~~~l~~~-p~---l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~-~------~~~~~G~~S~~L~-~l~~Gd---- 210 (384)
T cd06206 147 LPLATFLAML-PP---MRPRQYSISSSPLVDPGHATLTVSVLDAPALS-G------QGRYRGVASSYLS-SLRPGD---- 210 (384)
T ss_pred CCHHHHHHhC-cc---cCCcceeeccCccCCCCeEEEEEEEEEeecCC-C------CceeeeehHHHHh-hCCCCC----
Confidence 3468888775 54 3789999999985 35566666542100000 0 0001222333332 234676
Q ss_pred ccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEE
Q 002711 681 IPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYW 760 (889)
Q Consensus 681 ~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W 760 (889)
.+.+.+.||+|.+..+......+||||||+||||++|++++........ ....++.|+|
T Consensus 211 ~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~---------------------~~~~~v~L~~ 269 (384)
T cd06206 211 SIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQG---------------------RKLAPALLFF 269 (384)
T ss_pred eEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcC---------------------CCcCCEEEEE
Confidence 2234467999998644334568999999999999999999876542211 0135799999
Q ss_pred EeCCC-CchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHH
Q 002711 761 VTREQ-GSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRT 839 (889)
Q Consensus 761 ~~R~~-~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~ 839 (889)
++|+. .++ .|.+++.++++. +.++++..+++..+. ... -+. +.=+-+.+.
T Consensus 270 G~R~~~~d~-ly~~el~~~~~~---~~~~l~~a~Sr~~~~-~~~------------------yVq------~~i~~~~~~ 320 (384)
T cd06206 270 GCRHPDHDD-LYRDELEEWEAA---GVVSVRRAYSRPPGG-GCR------------------YVQ------DRLWAEREE 320 (384)
T ss_pred eCCCCCccc-chHHHHHHHHHC---CCeEEEEEecccCCC-CCE------------------ech------hhHHhhHHH
Confidence 99998 565 688888888762 456766655532110 000 000 000001112
Q ss_pred HHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcC
Q 002711 840 VFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRK 877 (889)
Q Consensus 840 v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~ 877 (889)
+.+.+ . +...||+|||++|+++|++.+.+...+
T Consensus 321 ~~~~~-~----~~~~vyiCGp~~M~~~v~~~L~~i~~~ 353 (384)
T cd06206 321 VWELW-E----QGARVYVCGDGRMAPGVREVLKRIYAE 353 (384)
T ss_pred HHHHH-H----CCcEEEEECCCchHHHHHHHHHHHHHH
Confidence 22111 1 234699999999999999998877644
No 78
>PTZ00183 centrin; Provisional
Probab=99.56 E-value=3.7e-14 Score=140.54 Aligned_cols=141 Identities=13% Similarity=0.237 Sum_probs=114.5
Q ss_pred ccCcccHHHHHHHHHccc--CCCccchhhhcccc---cCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-ccC
Q 002711 139 NVGTEGWGEVEKRFDELA--VDGMLPKSSFGQCI---GMNESKDFASELFDALARRRGLTSSSITKSELRGFWEQI-TDQ 212 (889)
Q Consensus 139 ~~~~~~~~~l~~~F~~ld--~dG~Ls~~ef~~~l---g~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~-~~~ 212 (889)
+.+.++..++++.|..+| ++|.|+.+||..++ |.......+..+|..++. + ++|.|+++||+.++... ...
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~-~--~~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDK-D--GSGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-C--CCCcEeHHHHHHHHHHHhcCC
Confidence 356677889999999999 89999999998877 455566778888885443 3 34999999999987664 345
Q ss_pred ChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 213 SFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 213 ~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
..++.++.+|+.+|+|++|.|+.+||..++.... ..++ ++.++.+|..+|.|++|.|+|+||..+|...|
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~--~~l~------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKELG--ETIT------DEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC--CCCC------HHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 5678899999999999999999999999986432 1233 44567799999999999999999999998877
No 79
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.54 E-value=6.8e-14 Score=159.10 Aligned_cols=191 Identities=13% Similarity=0.176 Sum_probs=121.2
Q ss_pred CCcccceeeeecCC--CCceEEEEEecCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCC
Q 002711 618 QFQWHPFSITSAPG--DDYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQ 695 (889)
Q Consensus 618 ~~e~HPFTIaSaP~--~~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~ 695 (889)
+.+.+||||+|+|. ++.++++|+.....|..- ..+.|..|++|. ++.+|+ +|.|.||+|.+..
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~--------~~~~G~~S~~L~-~l~~Gd------~v~v~~p~g~F~l 225 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSG--------RSRYGLCSSYLA-GLKVGQ------RVTVFIKKSSFKL 225 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCC--------CeecccHHHHHh-hcCCCC------EEEEEEECCcccC
Confidence 45889999999996 478999999874333100 012344455554 355777 8999999998754
Q ss_pred CCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCC-CchhHHHHH
Q 002711 696 DYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQ-GSFEWFRGV 774 (889)
Q Consensus 696 ~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~-~~~~wf~~~ 774 (889)
+-.....+||||||+|||||+|++++.....++.. ...++.|+|++|+. .++ .|.++
T Consensus 226 p~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~---------------------~~~~~~L~~G~R~~~~d~-~y~~e 283 (382)
T cd06207 226 PKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGP---------------------EIGPVLLYFGCRHEDKDY-LYKEE 283 (382)
T ss_pred CCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCc---------------------cCCCEEEEECCCCCCccc-cHHHH
Confidence 33334579999999999999999998764322110 25689999999998 664 68888
Q ss_pred HHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEE
Q 002711 775 MNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVG 854 (889)
Q Consensus 775 l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~ 854 (889)
+.++++.. ..++++...++... ... ..| +..+-+.+.+.+.+. .+...
T Consensus 284 l~~~~~~~--~~~~~~~a~Srd~~--~~~-----yVq-------------------~~l~~~~~~~~~~l~----~~~~~ 331 (382)
T cd06207 284 LEEYEKSG--VLTTLGTAFSRDQP--KKV-----YVQ-------------------DLIRENSDLVYQLLE----EGAGV 331 (382)
T ss_pred HHHHHhCC--CCceEEEEecCCCC--Cce-----EhH-------------------HHHHHCHHHHHHHHh----cCCCE
Confidence 88876532 34555554443110 000 000 000111122222221 12246
Q ss_pred EEEeCChh-HHHHHHHHHHhhhcC
Q 002711 855 VFYCGAPG-LTGELRRLSQDFSRK 877 (889)
Q Consensus 855 V~~CGP~~-m~~~vr~~~~~~~~~ 877 (889)
||+|||+. |+++|++.+.+...+
T Consensus 332 vYvCG~~~~M~~~V~~~L~~~~~~ 355 (382)
T cd06207 332 IYVCGSTWKMPPDVQEAFEEILKK 355 (382)
T ss_pred EEEECCcccccHHHHHHHHHHHHH
Confidence 99999998 999999998877543
No 80
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.54 E-value=5.4e-14 Score=158.50 Aligned_cols=200 Identities=13% Similarity=0.155 Sum_probs=124.1
Q ss_pred CCccCCccEEEEEEcCCCCCcccceeeeecCC--CCceEEEEEecCcchHHHHHHHhhccCCCCCCCccccccccccCCC
Q 002711 600 GFKYTSGQYIFVNCAAVSQFQWHPFSITSAPG--DDYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADN 677 (889)
Q Consensus 600 ~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~--~~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~ 677 (889)
..++.||||+-+..| .+.++|||+|+|. ++.+.++|+..-.-|.. ..+.|..|++|....++|+
T Consensus 129 ~~~~~~gq~l~l~~~----~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~---------~~~~G~~S~~L~~~~~~Gd- 194 (360)
T cd06199 129 PARLTAEELLDLLRP----LQPRLYSIASSPKAVPDEVHLTVAVVRYESHG---------RERKGVASTFLADRLKEGD- 194 (360)
T ss_pred CCCCCHHHHHHhCcC----CCCcceeeccCcccCCCeEEEEEEEeeecCCC---------CccceehhHHHHhcCCCCC-
Confidence 357889999988643 3679999999996 36899999865111100 0123444555543334676
Q ss_pred CCCccEEEEeCCC-CCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceE
Q 002711 678 RPRIPKLLIDGPY-GAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRA 756 (889)
Q Consensus 678 ~~~~~~v~vdGPY-G~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv 756 (889)
+|.|.||. |.+..+-.....+||||+|+||||++|++++.+... ...++
T Consensus 195 -----~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~-------------------------~~~~~ 244 (360)
T cd06199 195 -----TVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG-------------------------AKGKN 244 (360)
T ss_pred -----EEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-------------------------CCCcE
Confidence 78888744 556543333468999999999999999999875431 13568
Q ss_pred EEEEEeCCC-CchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCC
Q 002711 757 YFYWVTREQ-GSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARP 835 (889)
Q Consensus 757 ~~~W~~R~~-~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRP 835 (889)
.++|++|+. .++ .|.++++++++.. ..+.++...++... ... ..|... +-
T Consensus 245 ~L~~G~R~~~~D~-~y~~el~~~~~~~--~~~~~~~a~Sr~~~--~~~-----yVq~~l-------------------~~ 295 (360)
T cd06199 245 WLFFGERHFATDF-LYQDELQQWLKDG--VLTRLDTAFSRDQA--EKV-----YVQDRM-------------------RE 295 (360)
T ss_pred EEEEcCCCCccch-hHHHHHHHHHHcC--CCeEEEEEEccCCC--CCc-----cHHHHH-------------------HH
Confidence 999999997 465 6888888876542 34555554443210 000 000000 00
Q ss_pred CHHHHHHHHHhhCCCCeEEEEEeCCh-hHHHHHHHHHHhhhcC
Q 002711 836 NWRTVFKHVAVKHTDERVGVFYCGAP-GLTGELRRLSQDFSRK 877 (889)
Q Consensus 836 d~~~v~~~~~~~~~~~~v~V~~CGP~-~m~~~vr~~~~~~~~~ 877 (889)
+..++.. +.. +...||+|||+ .|.++|++++.+...+
T Consensus 296 ~~~~~~~-~~~----~~~~vYvCG~~~~M~~~V~~~L~~i~~~ 333 (360)
T cd06199 296 QGAELWA-WLE----EGAHFYVCGDAKRMAKDVDAALLDIIAT 333 (360)
T ss_pred hHHHHHH-HHh----CCCEEEEECCCccccHHHHHHHHHHHHH
Confidence 0111111 111 12469999999 8999999988776543
No 81
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.1e-13 Score=131.24 Aligned_cols=139 Identities=17% Similarity=0.298 Sum_probs=110.3
Q ss_pred cCcccHHHHHHHHHccc--CCCccchhhhccc---ccCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hccCC
Q 002711 140 VGTEGWGEVEKRFDELA--VDGMLPKSSFGQC---IGMNESKDFASELFDALARRRGLTSSSITKSELRGFWEQ-ITDQS 213 (889)
Q Consensus 140 ~~~~~~~~l~~~F~~ld--~dG~Ls~~ef~~~---lg~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~-~~~~~ 213 (889)
+..+.-.+++..|+.++ ++|+|+.+||.-+ +|....+. ++-.++.+.|..+.|.|+|++|+..+.. +....
T Consensus 27 l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~---ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 27 LTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKE---EILKLLADVDKEGSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred ccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchH---HHHHHHHhhhhccCceechHHHHHHHHHHHhccC
Confidence 34455567888888888 8999999999544 46655544 4444455666556799999999998765 67777
Q ss_pred hHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhC
Q 002711 214 FDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQA 289 (889)
Q Consensus 214 ~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 289 (889)
+.+.++.+|+.+|.|++|.|+..+|+.+++..... +. ++....|++|+|.|+||.|+-+||..+|++.
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgen--lt------D~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGEN--LT------DEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCcc--cc------HHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 99999999999999999999999999999754321 22 5566779999999999999999999999763
No 82
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.50 E-value=1.9e-13 Score=163.26 Aligned_cols=136 Identities=12% Similarity=0.171 Sum_probs=92.6
Q ss_pred CccCCccEEEEEEcCCCCCcccceeeeecCC--CCceEEEEEecCcchHHHHHHHhhccCCCCCCCccccccccccCCCC
Q 002711 601 FKYTSGQYIFVNCAAVSQFQWHPFSITSAPG--DDYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNR 678 (889)
Q Consensus 601 ~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~--~~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~ 678 (889)
+++.||||+-+..| .+.+||||+|+|. ++.+.++|+.+---+. -..+.|..|++|...+++|+
T Consensus 367 ~~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~---------~~~~~G~~S~~L~~~l~~Gd-- 431 (597)
T TIGR01931 367 ADLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAH---------GRARLGGASGFLAERLKEGD-- 431 (597)
T ss_pred CCCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCC---------CCccccchhHHHHhhCCCCC--
Confidence 57889999988865 3789999999995 5689999986510000 00122333344433344677
Q ss_pred CCccEEEEeCCCC-CCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEE
Q 002711 679 PRIPKLLIDGPYG-APAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAY 757 (889)
Q Consensus 679 ~~~~~v~vdGPYG-~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ 757 (889)
+|.|.||.| .+..+-.....+||||+|+|||||+|+++++.... ...++.
T Consensus 432 ----~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-------------------------~~g~~~ 482 (597)
T TIGR01931 432 ----TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG-------------------------AKGKNW 482 (597)
T ss_pred ----EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc-------------------------CCCCEE
Confidence 788887554 55433233457999999999999999999875431 135789
Q ss_pred EEEEeCC-CCchhHHHHHHHHHHhh
Q 002711 758 FYWVTRE-QGSFEWFRGVMNEVAEY 781 (889)
Q Consensus 758 ~~W~~R~-~~~~~wf~~~l~el~~~ 781 (889)
|+|++|+ ..++ .|.++|.++.+.
T Consensus 483 LffG~R~~~~D~-ly~~El~~~~~~ 506 (597)
T TIGR01931 483 LFFGNPHFTTDF-LYQVEWQNYLKK 506 (597)
T ss_pred EEECCCCCCcch-hHHHHHHHHHHc
Confidence 9999998 5565 477877766543
No 83
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.43 E-value=2.7e-13 Score=129.13 Aligned_cols=120 Identities=24% Similarity=0.371 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHhhhhh-hhhccccccCCceecCCcchhHHHHHHHHHHHHhhhhhhhhhhcccccccccCcccccCccC
Q 002711 381 TLKFNMALILLPVCRNT-ITWLRSRTKLGQVVPFDDNINFHKVIAVGIAIGVGLHAGAHLTCDFPRLLHATDEEYEPMKP 459 (889)
Q Consensus 381 ~l~~n~~lill~~~Rn~-l~~Lr~~t~l~~~~~~d~~~~fHr~ig~~~~~~~~lH~~~~l~~~f~~~~~~~~~~~~~l~~ 459 (889)
....|+++++++++||+ +.++++ +|+|+.+.+|||+|+++++.+++|++.|+...+.. ....
T Consensus 4 ~a~~~l~~~~~l~~R~~~l~~~~~-------~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~----~~~~------ 66 (125)
T PF01794_consen 4 LAFALLPLVFLLGLRNSPLARLTG-------ISFDRLLRFHRWLGRLAFFLALLHGVLYLINWLRF----GGWD------ 66 (125)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhc------
Confidence 34577888888889974 566666 89999999999999999999999999998762210 0000
Q ss_pred ccCCCCCCcccccccccchhHHHHHHHHHHHHHHhhhhhHhhccCCchhhhhccccchhHHHHHHHHHHHHHHH
Q 002711 460 FFGDDRPDDYWWFVKGTEGWTGVVMVVLMAISYTLAQPWFRRNRLNLPKILKKLTGFNAFWYSHHLFVIVYVLF 533 (889)
Q Consensus 460 ~~~~~~~~~yw~~~~~~~g~tG~i~lv~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~vll 533 (889)
.+..++.........+|++++++|++++++|.+++|||+ .||.|+++|++++++++++
T Consensus 67 -----~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~-----------~ye~f~~~H~~~~~~~~l~ 124 (125)
T PF01794_consen 67 -----WQEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRR-----------NYEIFYYLHILFYIAFLLA 124 (125)
T ss_pred -----hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHH
Confidence 001111222334457899999999999999999999553 7999999999998887654
No 84
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.41 E-value=9.9e-13 Score=122.15 Aligned_cols=145 Identities=19% Similarity=0.315 Sum_probs=115.9
Q ss_pred CcccHHHHHHHHHccc-------CC------CccchhhhcccccCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 002711 141 GTEGWGEVEKRFDELA-------VD------GMLPKSSFGQCIGMNESKDFASELFDALARRRGLTSSSITKSELRGFWE 207 (889)
Q Consensus 141 ~~~~~~~l~~~F~~ld-------~d------G~Ls~~ef~~~lg~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~ 207 (889)
+..+|-+|.++|..++ -. -+++.+.+.+.-.+++ +++-+++.+++. .|+ .|.++|++|+.+.+
T Consensus 23 trKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELke-npfk~ri~e~FS-eDG--~GnlsfddFlDmfS 98 (189)
T KOG0038|consen 23 TRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKE-NPFKRRICEVFS-EDG--RGNLSFDDFLDMFS 98 (189)
T ss_pred cHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhc-ChHHHHHHHHhc-cCC--CCcccHHHHHHHHH
Confidence 4478889999999987 11 2455666666555554 467888888654 444 39999999999999
Q ss_pred HhccCCh-HHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 002711 208 QITDQSF-DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLL 286 (889)
Q Consensus 208 ~~~~~~~-ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l 286 (889)
.++...+ +-++..||+.||-|+|++|..++|...+.... .+.++ .++++.+++.+++|+|.|+||++++.||+.|+
T Consensus 99 V~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT-r~eLs--~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 99 VFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT-RDELS--DEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred HHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHh-hccCC--HHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 9887655 56899999999999999999999999987433 23344 46678889999999999999999999999999
Q ss_pred HhCCCc
Q 002711 287 LQAPSQ 292 (889)
Q Consensus 287 ~~~p~~ 292 (889)
.+.|..
T Consensus 176 ~raPDF 181 (189)
T KOG0038|consen 176 LRAPDF 181 (189)
T ss_pred HhCcch
Confidence 999954
No 85
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.40 E-value=6.9e-12 Score=143.25 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=91.9
Q ss_pred CCcccceeeeecCCC--CceEEEEEec-----CcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeC-C
Q 002711 618 QFQWHPFSITSAPGD--DYLSIHIRTL-----GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDG-P 689 (889)
Q Consensus 618 ~~e~HPFTIaSaP~~--~~l~l~Ir~~-----G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdG-P 689 (889)
+.+.|+|||+|+|.. +.++++|+.. |-.|..|.++.... ..+|+ .|.+.| |
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~---------------~~~G~------~v~i~~~~ 229 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSA---------------SSHGV------KVPFYLRS 229 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhh---------------cCCCC------EEEEEEec
Confidence 358899999999964 7899998875 55677776654210 01355 788888 6
Q ss_pred CCCCCCCCC-CCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCC-Cc
Q 002711 690 YGAPAQDYK-DYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQ-GS 767 (889)
Q Consensus 690 YG~~~~~~~-~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~-~~ 767 (889)
.|.+..+.. ....+||||+|+|||||+|++++......+.. .....++.|+|++|+. .+
T Consensus 230 ~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~-------------------~~~~~~~~Lf~G~R~~~~d 290 (398)
T cd06203 230 SSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHT-------------------ETVFGEAWLFFGCRHRDRD 290 (398)
T ss_pred CCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcc-------------------cCCCCCEEEEEeCCCCCcc
Confidence 777654333 34579999999999999999998765321100 0124679999999998 56
Q ss_pred hhHHHHHHHHHHhhcCCCcEEEEEeeec
Q 002711 768 FEWFRGVMNEVAEYDQDGVIELHNYCTS 795 (889)
Q Consensus 768 ~~wf~~~l~el~~~~~~~~i~l~~y~T~ 795 (889)
+ .|.+++.++++.. ....++...++
T Consensus 291 ~-~y~~El~~~~~~~--~~~~~~~a~SR 315 (398)
T cd06203 291 Y-LFRDELEEFLEEG--ILTRLIVAFSR 315 (398)
T ss_pred h-hHHHHHHHHHHcC--CCceEEEEECC
Confidence 5 5788888877642 23445544443
No 86
>PRK06214 sulfite reductase; Provisional
Probab=99.37 E-value=1.2e-11 Score=144.26 Aligned_cols=137 Identities=14% Similarity=0.199 Sum_probs=86.3
Q ss_pred CCCcccceeeeecCC--CCceEEEEEecCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCC
Q 002711 617 SQFQWHPFSITSAPG--DDYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPA 694 (889)
Q Consensus 617 s~~e~HPFTIaSaP~--~~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~ 694 (889)
.+.+.|||||+|+|. ++.++|+|+....-+. ...+.|..|+++...+++|+ .+.+.+.+|+| +.
T Consensus 312 p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~---------~~~~~G~~S~~L~~~l~~Gd----~V~v~i~~~~g-F~ 377 (530)
T PRK06214 312 DPLQPRLYSISSSPKATPGRVSLTVDAVRYEIG---------SRLRLGVASTFLGERLAPGT----RVRVYVQKAHG-FA 377 (530)
T ss_pred CCCCcEEEEeccCCcCCCCEEEEEEEEEeeccC---------CccccchhhHHHHhcCCCCC----EEEEEecCCCC-Cc
Confidence 346899999999995 4789999986511010 00123334444444445666 23444466777 54
Q ss_pred CCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHH
Q 002711 695 QDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGV 774 (889)
Q Consensus 695 ~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~ 774 (889)
.+......+||||+|+|||||+|+|++..... ...+++|+|++|....-..|.++
T Consensus 378 lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~-------------------------~~g~~~LffG~R~~~~D~ly~dE 432 (530)
T PRK06214 378 LPADPNTPIIMVGPGTGIAPFRAFLHERAATK-------------------------APGRNWLFFGHQRSATDFFYEDE 432 (530)
T ss_pred cCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc-------------------------CCCCeEEEEEecCChhhhHHHHH
Confidence 33333457999999999999999999865321 13568999999765432368888
Q ss_pred HHHHHhhcCCCcEEEEEeee
Q 002711 775 MNEVAEYDQDGVIELHNYCT 794 (889)
Q Consensus 775 l~el~~~~~~~~i~l~~y~T 794 (889)
|+++.+.. ....++...+
T Consensus 433 L~~l~~~g--~l~~l~~afS 450 (530)
T PRK06214 433 LNGLKAAG--VLTRLSLAWS 450 (530)
T ss_pred HHHHHHhC--CceEEEEEEe
Confidence 88877642 2334444444
No 87
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.36 E-value=1.7e-11 Score=140.81 Aligned_cols=194 Identities=17% Similarity=0.246 Sum_probs=113.7
Q ss_pred CCcccceeeeecCC--CCceEEEEEec-----------CcchHHHHHHHhhccC--CCCC-CCccccccccccCCCCCCc
Q 002711 618 QFQWHPFSITSAPG--DDYLSIHIRTL-----------GDWTSQLKSIFAKVCQ--PPSV-DQSGLLRADIGQADNRPRI 681 (889)
Q Consensus 618 ~~e~HPFTIaSaP~--~~~l~l~Ir~~-----------G~wT~~L~~~~~~~~~--~~~~-~~s~~l~~~~~~g~~~~~~ 681 (889)
+.+.++|||+|+|. .+.+++.|+.. |-.|..|.+....... .+.. -.++. .+..+|+
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~--~~~~~g~----- 247 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGP--RKKGGGS----- 247 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccc--cccCCCC-----
Confidence 45899999999995 46788877754 4445555543311000 0000 00000 0001344
Q ss_pred cEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEE
Q 002711 682 PKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWV 761 (889)
Q Consensus 682 ~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~ 761 (889)
.|.+.+|.|.+..+......+||||||+||||++|++++......+. ....++.|+|+
T Consensus 248 -~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~---------------------~~~~~v~L~~G 305 (416)
T cd06204 248 -KVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESG---------------------KKVGPTLLFFG 305 (416)
T ss_pred -eEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhcc---------------------CccCCEEEEEc
Confidence 67888888887543333468999999999999999999875432211 01357999999
Q ss_pred eCCC-CchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCC--CHH
Q 002711 762 TREQ-GSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARP--NWR 838 (889)
Q Consensus 762 ~R~~-~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRP--d~~ 838 (889)
+|+. .++ .|.+++.++++.. ..+.++...++..+ ... ..| +|- +..
T Consensus 306 ~R~~~~d~-ly~~el~~~~~~~--~~~~l~~a~Sr~~~--~k~-----yVq---------------------~~i~~~~~ 354 (416)
T cd06204 306 CRHPDEDF-IYKDELEEYAKLG--GLLELVTAFSREQP--KKV-----YVQ---------------------HRLAEHAE 354 (416)
T ss_pred CCCCCccc-chHHHHHHHHHcC--CceEEEEEECcCCC--CCc-----chH---------------------HHHHHhHH
Confidence 9998 565 5788888876532 34666554443210 000 000 000 111
Q ss_pred HHHHHHHhhCCCCeEEEEEeCChh-HHHHHHHHHHhhhc
Q 002711 839 TVFKHVAVKHTDERVGVFYCGAPG-LTGELRRLSQDFSR 876 (889)
Q Consensus 839 ~v~~~~~~~~~~~~v~V~~CGP~~-m~~~vr~~~~~~~~ 876 (889)
.+.+.+ . +...||+|||+. |+++|++...+...
T Consensus 355 ~~~~~l-~----~~~~vYvCGp~~~M~~~V~~~L~~i~~ 388 (416)
T cd06204 355 QVWELI-N----EGAYIYVCGDAKNMARDVEKTLLEILA 388 (416)
T ss_pred HHHHHH-H----cCCEEEEECCcccchHHHHHHHHHHHH
Confidence 222211 1 124699999998 99999998877654
No 88
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.36 E-value=2e-11 Score=125.83 Aligned_cols=218 Identities=17% Similarity=0.382 Sum_probs=145.8
Q ss_pred EEEEEEecCC--CCccCCccEEEEEEcCCC----CC----c---------------------ccceeeeecCCC-CceEE
Q 002711 590 VLALQMSKPQ--GFKYTSGQYIFVNCAAVS----QF----Q---------------------WHPFSITSAPGD-DYLSI 637 (889)
Q Consensus 590 v~~l~~~~p~--~~~~~pGQyv~l~~p~is----~~----e---------------------~HPFTIaSaP~~-~~l~l 637 (889)
+-+|.+..|. ...++||-|+.|.+|.-. -| | .+.||++|-|++ ..+.|
T Consensus 149 IKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPeE~giI~~ 228 (410)
T COG2871 149 IKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPEEKGIIKL 228 (410)
T ss_pred hhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChhhcCeEEE
Confidence 3456666554 478999999999998521 01 1 235777888865 45666
Q ss_pred EEEecCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHH
Q 002711 638 HIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLIS 717 (889)
Q Consensus 638 ~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP~ls 717 (889)
-||..-.=- .....|.|.+|.+.. .+++|+ +|.|.||||.+... .....+|+++||.|.+|+.|
T Consensus 229 NvRIAtPPp--------~~~~~PpG~mSSyi~-sLKpGD------KvtisGPfGEfFaK-dtdaemvFigGGAGmapmRS 292 (410)
T COG2871 229 NVRIATPPP--------RNPDAPPGQMSSYIW-SLKPGD------KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRS 292 (410)
T ss_pred EEEeccCCC--------CCCCCCccceeeeEE-eecCCC------eEEEeccchhhhhc-cCCCceEEEecCcCcCchHH
Confidence 677541100 011235677787776 356888 99999999997521 12346889999999999999
Q ss_pred HHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccc
Q 002711 718 IIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVY 797 (889)
Q Consensus 718 il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~ 797 (889)
.+-|++.+.+ ..|++.|.+..|+..+. .+.+..++++... +++..|+-++...
T Consensus 293 HIfDqL~rlh------------------------SkRkis~WYGARS~rE~-fY~Ed~d~L~ae~--pNF~wH~aLSdpl 345 (410)
T COG2871 293 HIFDQLKRLH------------------------SKRKISFWYGARSLREM-FYQEDFDQLQAEN--PNFHWHLALSDPL 345 (410)
T ss_pred HHHHHHHhhc------------------------ccceeeeeeccchHHHh-HHHHHHHHHHhhC--CCcEEEEEecCCC
Confidence 9999887743 36899999999999875 5777788776654 5788888776543
Q ss_pred cCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCC-CCeEEEEEeCChhHHHHHHHHHHhhhc
Q 002711 798 EEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHT-DERVGVFYCGAPGLTGELRRLSQDFSR 876 (889)
Q Consensus 798 ~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~-~~~v~V~~CGP~~m~~~vr~~~~~~~~ 876 (889)
.+.. .+|..--+| ..+.....+.|+ .++...|+||||-|...|-++..++..
T Consensus 346 pEDn---------------------W~g~TgFih------nv~~en~Lk~h~aPEDceyYmCGPp~mNasvikmL~dlGV 398 (410)
T COG2871 346 PEDN---------------------WDGYTGFIH------NVLYENYLKDHEAPEDCEYYMCGPPLMNASVIKMLKDLGV 398 (410)
T ss_pred CcCC---------------------cccchhHHH------HHHHhhhhhcCCCchheeEEeeCcchhhHHHHHHHHhcCc
Confidence 3221 111100011 112222233343 367899999999999999999998864
Q ss_pred C
Q 002711 877 K 877 (889)
Q Consensus 877 ~ 877 (889)
.
T Consensus 399 E 399 (410)
T COG2871 399 E 399 (410)
T ss_pred c
Confidence 3
No 89
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.34 E-value=1.7e-11 Score=140.37 Aligned_cols=196 Identities=12% Similarity=0.136 Sum_probs=110.0
Q ss_pred CcccceeeeecCC--CCceEEEEEecCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCC-CCCC
Q 002711 619 FQWHPFSITSAPG--DDYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYG-APAQ 695 (889)
Q Consensus 619 ~e~HPFTIaSaP~--~~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG-~~~~ 695 (889)
.+.+||||+|+|. ++.+.+.|+.....|..-. ...+.|..|++| .++++|+ .|.|.+|.| .+..
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~------~~~~~G~~S~~L-~~l~~Gd------~v~v~~~~~~~F~l 241 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQ------GPVHHGVCSTWL-NGLTPGD------TVPCFVRSAPSFHL 241 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCC------CCcccccHHHHH-HhCCCCC------EEEEEEeeCCccCC
Confidence 4889999999995 4677777766411110000 000123344444 2345676 677765433 3433
Q ss_pred CCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCC-CchhHHHHH
Q 002711 696 DYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQ-GSFEWFRGV 774 (889)
Q Consensus 696 ~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~-~~~~wf~~~ 774 (889)
+-.....+||||+|+|||||+|+|++.....++... ......++.|++++|+. .++ .|.++
T Consensus 242 p~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~-----------------~~~~~g~v~L~~G~R~~~~d~-ly~~E 303 (406)
T cd06202 242 PEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSED-----------------PGKKFGDMTLFFGCRNSTIDD-IYKEE 303 (406)
T ss_pred CCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhccc-----------------ccCCCCCEEEEEcCCCCCccc-chHHH
Confidence 222335799999999999999999986543210000 00124689999999999 554 57888
Q ss_pred HHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEE
Q 002711 775 MNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVG 854 (889)
Q Consensus 775 l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~ 854 (889)
+.++.+.. ...+++...++... .... ..|+. + +-+.+.+.+.+.. +...
T Consensus 304 l~~~~~~~--~~~~~~~a~SR~~~--~~k~----yVq~~--------------l-----~~~~~~v~~~l~~----~~~~ 352 (406)
T cd06202 304 TEEAKNKG--VLTEVYTALSREPG--KPKT----YVQDL--------------L-----KEQAESVYDALVR----EGGH 352 (406)
T ss_pred HHHHHHcC--CCceEEEEEcCCCC--CCCe----ehhhH--------------H-----HHhHHHHHHHHHh----CCCE
Confidence 88776532 34455555554210 0000 00000 0 0001122111111 2347
Q ss_pred EEEeCChhHHHHHHHHHHhhhc
Q 002711 855 VFYCGAPGLTGELRRLSQDFSR 876 (889)
Q Consensus 855 V~~CGP~~m~~~vr~~~~~~~~ 876 (889)
||+|||+.|+++|+++..+...
T Consensus 353 iYvCG~~~M~~~V~~~L~~i~~ 374 (406)
T cd06202 353 IYVCGDVTMAEDVSQTIQRILA 374 (406)
T ss_pred EEEeCCCchHHHHHHHHHHHHH
Confidence 9999999999999998776653
No 90
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.34 E-value=1.6e-11 Score=115.79 Aligned_cols=133 Identities=13% Similarity=0.270 Sum_probs=112.0
Q ss_pred CcccHHHHHHHHHccc--CCCccchhhhcccc---cCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH-HhccCCh
Q 002711 141 GTEGWGEVEKRFDELA--VDGMLPKSSFGQCI---GMNESKDFASELFDALARRRGLTSSSITKSELRGFWE-QITDQSF 214 (889)
Q Consensus 141 ~~~~~~~l~~~F~~ld--~dG~Ls~~ef~~~l---g~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~-~~~~~~~ 214 (889)
.+..|.++++.|..+| +||.|++++++..+ |...++++++.++. .- +|.|+|.-|+...- .++..++
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~----Ea---~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK----EA---PGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH----hC---CCCeeHHHHHHHHHHHhcCCCH
Confidence 4578999999999999 89999999998876 66666666666665 22 39999999998874 4677788
Q ss_pred HHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 215 ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
++-+..||++||.+++|.|..+.|+++|.. .+.+.+ ++.++.|++++-.|..|.|+|.+|..+|..
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt--~gDr~~------~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTT--MGDRFT------DEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHH--hcccCC------HHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 999999999999999999999999999964 233344 566788999999999999999999999984
No 91
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.30 E-value=1.3e-11 Score=114.55 Aligned_cols=107 Identities=18% Similarity=0.399 Sum_probs=71.0
Q ss_pred EEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHHHHHHHhhcCC
Q 002711 705 LVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQD 784 (889)
Q Consensus 705 lVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~l~el~~~~~~ 784 (889)
|||||+||||++|++++++.+ . ..++++|+|++|+.+++ .|.+++.++++....
T Consensus 1 lIagGtGIaP~~s~l~~~~~~-~------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~~~~~~~~ 54 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER-N------------------------DNRKVTLFYGARTPEDL-LFRDELEALAQEYPN 54 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH-T------------------------CTSEEEEEEEESSGGGS-TTHHHHHHHHHHSTT
T ss_pred CeecceeHHHHHHHHHHHHHh-C------------------------CCCCEEEEEEEcccccc-cchhHHHHHHhhccc
Confidence 799999999999999999876 1 25889999999999987 688889888876543
Q ss_pred CcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHH-HHHHh-hCCCCeEEEEEeCChh
Q 002711 785 GVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVF-KHVAV-KHTDERVGVFYCGAPG 862 (889)
Q Consensus 785 ~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~-~~~~~-~~~~~~v~V~~CGP~~ 862 (889)
.+.+ +.+...+.++ ..+.|| +.+.+ ++... ........||+|||++
T Consensus 55 -~~~~--~~~~~~~~~~---------------------------~~~~g~--v~~~~~~~~~~~~~~~~~~~v~iCGp~~ 102 (109)
T PF00175_consen 55 -RFHV--VYVSSPDDGW---------------------------DGFKGR--VTDLLLEDLLPEKIDPDDTHVYICGPPP 102 (109)
T ss_dssp -CEEE--EEETTTTSST---------------------------TSEESS--HHHHHHHHHHHHHHCTTTEEEEEEEEHH
T ss_pred -cccc--cccccccccc---------------------------CCceee--hhHHHHHhhcccccCCCCCEEEEECCHH
Confidence 3333 2221111000 011122 22333 33322 2223467899999999
Q ss_pred HHHHHHH
Q 002711 863 LTGELRR 869 (889)
Q Consensus 863 m~~~vr~ 869 (889)
|++++++
T Consensus 103 m~~~v~~ 109 (109)
T PF00175_consen 103 MMKAVRK 109 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999875
No 92
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.26 E-value=6e-11 Score=141.19 Aligned_cols=135 Identities=10% Similarity=0.140 Sum_probs=92.8
Q ss_pred ccCCccEEEEEEcCCCCCcccceeeeecCCC--CceEEEEEecCcchHHHHHHHhhccCCCCCCCccccccccccCCCCC
Q 002711 602 KYTSGQYIFVNCAAVSQFQWHPFSITSAPGD--DYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRP 679 (889)
Q Consensus 602 ~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~--~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~ 679 (889)
++.||||+-+..| .+.+||||+|+|.. +.+.+.|+.+--.+. -..+.|..|+++....++|+
T Consensus 371 ~~~~~q~l~ll~~----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~---------g~~~~G~~S~~L~~~l~~Gd--- 434 (600)
T PRK10953 371 QLDAEQLIGLLRP----LTPRLYSIASSQAEVENEVHITVGVVRYDIE---------GRARAGGASSFLADRLEEEG--- 434 (600)
T ss_pred CCCHHHHHHhCCC----CCCeeeecccCCCCCCCeEEEEEEEEEeecC---------CCCcCceEhhhhhhcCCCCC---
Confidence 5789999888755 36899999999953 566666544310000 00133445566655556777
Q ss_pred CccEEEEeCCCC-CCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEE
Q 002711 680 RIPKLLIDGPYG-APAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYF 758 (889)
Q Consensus 680 ~~~~v~vdGPYG-~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~ 758 (889)
+|.|.||.| .+..+......+||||+|+|||||++++++..... ...++.|
T Consensus 435 ---~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-------------------------~~~~~~L 486 (600)
T PRK10953 435 ---EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG-------------------------APGKNWL 486 (600)
T ss_pred ---EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC-------------------------CCCCeEE
Confidence 799998876 45433333458999999999999999999865431 1357899
Q ss_pred EEEeCC-CCchhHHHHHHHHHHhh
Q 002711 759 YWVTRE-QGSFEWFRGVMNEVAEY 781 (889)
Q Consensus 759 ~W~~R~-~~~~~wf~~~l~el~~~ 781 (889)
+|++|+ ..++ .|++++.++.+.
T Consensus 487 ffG~R~~~~D~-lY~~El~~~~~~ 509 (600)
T PRK10953 487 FFGNPHFTEDF-LYQVEWQRYVKE 509 (600)
T ss_pred EeeccCCccch-hHHHHHHHHHHc
Confidence 999998 4554 688888877654
No 93
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.14 E-value=1.7e-10 Score=97.01 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 002711 217 RLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLL 286 (889)
Q Consensus 217 ~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l 286 (889)
+++.+|+.+|+|+||+|+.+||+.++...... ..++..++.++.+|+.+|+|+||.|+|+||..+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~----~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRD----MSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSH----STHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 58899999999999999999999999753321 1145667888999999999999999999999876
No 94
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.11 E-value=2.9e-10 Score=122.97 Aligned_cols=130 Identities=24% Similarity=0.328 Sum_probs=108.1
Q ss_pred HHHHHHHHccc--CCCccchhhhcccc---cC-CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHH
Q 002711 146 GEVEKRFDELA--VDGMLPKSSFGQCI---GM-NESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLE 219 (889)
Q Consensus 146 ~~l~~~F~~ld--~dG~Ls~~ef~~~l---g~-~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~ 219 (889)
.+++.+|+.+| ++|.++..++.+++ +. ++....+..+|..++.+++ |.+||+||..++. ..|.++.
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~d---g~vDy~eF~~Y~~-----~~E~~l~ 85 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRD---GRVDYSEFKRYLD-----NKELELY 85 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcC---CcccHHHHHHHHH-----HhHHHHH
Confidence 47899999999 89999999999665 33 2556678888886655544 9999999999985 4577899
Q ss_pred HHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCCC
Q 002711 220 TFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAPS 291 (889)
Q Consensus 220 ~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~ 291 (889)
.+|+-.|.|+||.|+.+|+.+.++... ..++ ++.++.+|+.+|+|+++.|+++||...++-+|.
T Consensus 86 ~~F~~iD~~hdG~i~~~Ei~~~l~~~g--i~l~------de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 86 RIFQSIDLEHDGKIDPNEIWRYLKDLG--IQLS------DEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred HHHhhhccccCCccCHHHHHHHHHHhC--CccC------HHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 999999999999999999999987432 3344 556777999999999999999999999999883
No 95
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.06 E-value=4e-10 Score=102.88 Aligned_cols=90 Identities=23% Similarity=0.485 Sum_probs=74.0
Q ss_pred EEEEEEEEecCCEEEEEEecCC---CCccCCccEEEEEEcCCCCCcccceeeeecCCC-CceEEEEEec--CcchHHHHH
Q 002711 578 VRILKVAVYPGNVLALQMSKPQ---GFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGD-DYLSIHIRTL--GDWTSQLKS 651 (889)
Q Consensus 578 ~~i~~v~~~~~~v~~l~~~~p~---~~~~~pGQyv~l~~p~is~~e~HPFTIaSaP~~-~~l~l~Ir~~--G~wT~~L~~ 651 (889)
++|++++.+.+++..++|..|. .+.+.||||+.|+++.-....++||||+|.|.+ +.+.|+||.. |..|+.|.+
T Consensus 2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~~ 81 (99)
T PF00970_consen 2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLHQ 81 (99)
T ss_dssp EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHHT
T ss_pred EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHHh
Confidence 5788999999999999998763 367999999999999444467999999999975 5899999999 778888854
Q ss_pred HHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCC
Q 002711 652 IFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAP 693 (889)
Q Consensus 652 ~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~ 693 (889)
+ ++|+ .|.|.||+|.+
T Consensus 82 -l-------------------~~Gd------~v~i~gP~G~f 97 (99)
T PF00970_consen 82 -L-------------------KPGD------EVEIRGPYGNF 97 (99)
T ss_dssp -S-------------------CTTS------EEEEEEEESSE
T ss_pred -C-------------------CCCC------EEEEEEccccc
Confidence 2 3677 89999999986
No 96
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.00 E-value=6.9e-10 Score=113.80 Aligned_cols=129 Identities=20% Similarity=0.230 Sum_probs=92.6
Q ss_pred hccccEEEEEEEEecCCEEEEEEecCC----CCccCCccEEEEEEc--CCCC--CcccceeeeecCCCCceEEEEEecCc
Q 002711 573 SGYKSVRILKVAVYPGNVLALQMSKPQ----GFKYTSGQYIFVNCA--AVSQ--FQWHPFSITSAPGDDYLSIHIRTLGD 644 (889)
Q Consensus 573 ~~~~~~~i~~v~~~~~~v~~l~~~~p~----~~~~~pGQyv~l~~p--~is~--~e~HPFTIaSaP~~~~l~l~Ir~~G~ 644 (889)
.++..++|......++||..+.+.+-. .....|||||-++-. ..+- ..-..+|..++...+.+.+.+|...+
T Consensus 147 ~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~ 226 (385)
T KOG3378|consen 147 DGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAG 226 (385)
T ss_pred CCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehhc
Confidence 355678888888888999999986422 245789999999863 3321 11223455555556889999987722
Q ss_pred chHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCC---CCCCCEEEEEEcCcchhhHHHHHHH
Q 002711 645 WTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQD---YKDYDVLLLVGLGIGATPLISIIKD 721 (889)
Q Consensus 645 wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~---~~~~~~vllVagGiGITP~lsil~~ 721 (889)
|-.|++++.+.+.|+ .|.+..|-|.+... ......++|.+|||||||+++|+..
T Consensus 227 -----------------G~VS~~~H~~~KVGD------~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~ 283 (385)
T KOG3378|consen 227 -----------------GVVSNFVHDNLKVGD------IVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIET 283 (385)
T ss_pred -----------------hhhHHHhhccccccc------eeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHH
Confidence 334556777778898 89999999998632 2234679999999999999999987
Q ss_pred HHH
Q 002711 722 VLN 724 (889)
Q Consensus 722 l~~ 724 (889)
.+.
T Consensus 284 ~~~ 286 (385)
T KOG3378|consen 284 ALL 286 (385)
T ss_pred HHh
Confidence 653
No 97
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.00 E-value=3.3e-09 Score=106.61 Aligned_cols=126 Identities=17% Similarity=0.314 Sum_probs=103.4
Q ss_pred HHHHHHHHccc--CCCccchhhhcccccC----CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHH
Q 002711 146 GEVEKRFDELA--VDGMLPKSSFGQCIGM----NESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLE 219 (889)
Q Consensus 146 ~~l~~~F~~ld--~dG~Ls~~ef~~~lg~----~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~ 219 (889)
..+...|.+.| ..|.|+-+|+.++|.. .-+.+.+.-|..+++ .+. +|+|+++||.+.|..+. .-+
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd-~~~--~G~i~f~EF~~Lw~~i~------~Wr 127 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFD-RDN--SGTIGFKEFKALWKYIN------QWR 127 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhc-CCC--CCccCHHHHHHHHHHHH------HHH
Confidence 56888999999 8999999999999842 124566777777544 433 39999999999998764 588
Q ss_pred HHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 220 TFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 220 ~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
..|+-||+|++|.|+..||++.+... ...++ ++..+.|++.+|.-+.|.|.|++|++.+..
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~--Gy~Ls------pq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQL--GYRLS------PQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHc--CcCCC------HHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 99999999999999999999999742 34455 677888999999888999999999998765
No 98
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.4e-09 Score=115.26 Aligned_cols=133 Identities=20% Similarity=0.238 Sum_probs=98.5
Q ss_pred cHHHHHHHHHccc--CCCccchhhhcccccCCCCHHHH-HHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCCh--H---
Q 002711 144 GWGEVEKRFDELA--VDGMLPKSSFGQCIGMNESKDFA-SELFDALARRRGLTSSSITKSELRGFWEQITDQSF--D--- 215 (889)
Q Consensus 144 ~~~~l~~~F~~ld--~dG~Ls~~ef~~~lg~~~~~~~~-~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~--e--- 215 (889)
.+.+=+++|+.-| +||.++++||...|.-.+...+. --+-+.+.+.|.|++|+|+++||+.-+........ +
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 3445678999988 89999999999999544322221 12233456677778899999999987765432221 1
Q ss_pred HHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 002711 216 ARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEM 284 (889)
Q Consensus 216 e~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~ 284 (889)
..-+++|..+|+|+||+++.+|++..+. +.....++.++..++.++|.|+||++|++|...
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~--------P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWIL--------PSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccC--------CCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 1346889999999999999999998873 222234577889999999999999999998643
No 99
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.96 E-value=4.6e-09 Score=97.81 Aligned_cols=135 Identities=17% Similarity=0.269 Sum_probs=100.5
Q ss_pred ccHHHHHHHHHccc--CCCccchhhhcccc---cCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccC---Ch
Q 002711 143 EGWGEVEKRFDELA--VDGMLPKSSFGQCI---GMNESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQ---SF 214 (889)
Q Consensus 143 ~~~~~l~~~F~~ld--~dG~Ls~~ef~~~l---g~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~---~~ 214 (889)
+...++++.|..+| +||+|+.++...|| |.++++.++.+.......+. -+.-.|+|++|+-.+.++.+. ..
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~-~~~~rl~FE~fLpm~q~vaknk~q~t 86 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRRE-MNVKRLDFEEFLPMYQQVAKNKDQGT 86 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccch-hhhhhhhHHHHHHHHHHHHhccccCc
Confidence 44577889999999 89999999998887 88888776666655333221 123689999999998887543 34
Q ss_pred HHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 002711 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLL 287 (889)
Q Consensus 215 ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~ 287 (889)
-+..-.-.+.|||+++|.|...||++++... +++++ ++.++.++.-. .|.+|.|+|++|++.+.
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttl--Gekl~------eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTL--GEKLT------EEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHH--Hhhcc------HHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 4556667899999999999999999999643 34454 44455555543 47889999999998764
No 100
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.96 E-value=5.4e-09 Score=127.42 Aligned_cols=111 Identities=17% Similarity=0.322 Sum_probs=90.0
Q ss_pred cEEEEEEEEecCCEEEEEEecCCC-CccCCccEEEEEEcCCC--CC-cccceeeeecC-CCCceEEEEEecCcchHHHHH
Q 002711 577 SVRILKVAVYPGNVLALQMSKPQG-FKYTSGQYIFVNCAAVS--QF-QWHPFSITSAP-GDDYLSIHIRTLGDWTSQLKS 651 (889)
Q Consensus 577 ~~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~is--~~-e~HPFTIaSaP-~~~~l~l~Ir~~G~wT~~L~~ 651 (889)
..+|++++.+.+++..+++..|.- -.++||||+.|+++... .+ +..||||++.+ +.+.+++.++..|.-|+.|.+
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGkgT~~Ls~ 871 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGKSTSLCKT 871 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEEChHHHHHhc
Confidence 357888899999999999988753 36889999999986432 22 55689999875 457899999999999999875
Q ss_pred HHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEcCcchhh
Q 002711 652 IFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATP 714 (889)
Q Consensus 652 ~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVagGiGITP 714 (889)
+- +|+ .+.|.||+|.+.. ...++++|+||||+|++|
T Consensus 872 l~--------------------~Gd------~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiAp 907 (1028)
T PRK06567 872 LS--------------------ENE------KVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIG 907 (1028)
T ss_pred CC--------------------CCC------EEEEEcccCCCCC-CCCCCeEEEEEccccHHH
Confidence 33 677 7999999999864 334578999999999997
No 101
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.87 E-value=2.1e-08 Score=99.02 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHH
Q 002711 178 FASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQER 257 (889)
Q Consensus 178 ~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~ 257 (889)
...++|+.+ +.++ +|.|+-+|+..++..++....++.++.+++.+|.|+||.|+.+||..++........... .
T Consensus 9 el~~~F~~f-D~d~--~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~---~ 82 (151)
T KOG0027|consen 9 ELKEAFQLF-DKDG--DGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE---A 82 (151)
T ss_pred HHHHHHHHH-CCCC--CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc---c
Confidence 356666643 3333 499999999999999998899999999999999999999999999999974332211110 1
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 258 VEEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 258 ~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
..+.+..+|+.+|.|+||+||.+||+.+|...-
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC
Confidence 244677799999999999999999999998754
No 102
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.83 E-value=9.5e-09 Score=91.50 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcC-CCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 216 ARLETFFDMVDK-NLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 216 e~l~~aF~~~Dk-d~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
..+..+|+.||+ |++|+|+.+||+.+|+.... +.++. .+.++.||+++|.|+||.|+|+||..+|..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-~~ls~-----~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLP-HLLKD-----VEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-hhccC-----HHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 358899999999 99999999999999974221 22331 156777999999999999999999999965
No 103
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.77 E-value=2.3e-08 Score=90.22 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=53.7
Q ss_pred HHHHHHHHHhc-CCCCc-eeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 216 ARLETFFDMVD-KNLDG-RITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 216 e~l~~aF~~~D-kd~dG-~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
..+..+|+.|| +|+|| +||.+||+++++..... .+.. ...++.++.||+++|.|+||.|+|+||..+|..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~-~~~~--~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTD-FLSS--QKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHH-hccc--ccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 35788899999 89998 69999999999642211 0110 011456777999999999999999999999965
No 104
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.72 E-value=4e-08 Score=87.54 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=53.6
Q ss_pred HHHHHHHHHhc-CCCCc-eeeHHHHHHHHHhhh---hcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 216 ARLETFFDMVD-KNLDG-RITEEEVKEIIALSA---SANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 216 e~l~~aF~~~D-kd~dG-~It~eEl~~vl~~~~---~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
..++.+|+.|| +|+|| +|+.+||+.+|+... .+...+ ++.++.+|+++|.|+||.|+|+||..++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~------~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKE------QEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCC------HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 36889999998 89999 699999999997511 111111 445777999999999999999999999865
No 105
>PTZ00183 centrin; Provisional
Probab=98.71 E-value=1.9e-07 Score=92.42 Aligned_cols=101 Identities=22% Similarity=0.203 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHH
Q 002711 179 ASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERV 258 (889)
Q Consensus 179 ~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~ 258 (889)
..++|.. .|.+++|.|+++||..++..+.....++.++.+|..+|+|++|.|+.+|+..++...... .. .
T Consensus 19 ~~~~F~~---~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~-~~------~ 88 (158)
T PTZ00183 19 IREAFDL---FDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE-RD------P 88 (158)
T ss_pred HHHHHHH---hCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC-CC------c
Confidence 4455553 334445999999999999887655667889999999999999999999999887632211 11 1
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHhC
Q 002711 259 EEYAALIMEELDPHNLGYIELYNLEMLLLQA 289 (889)
Q Consensus 259 ~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 289 (889)
++.++.+|+.+|.|++|+|+.+||..++...
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 3456779999999999999999999999753
No 106
>PTZ00184 calmodulin; Provisional
Probab=98.65 E-value=2.8e-07 Score=89.92 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHH
Q 002711 179 ASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERV 258 (889)
Q Consensus 179 ~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~ 258 (889)
..+.|..+ |.+++|.|+++||..++..++....++.++.+|+.+|.|++|.|+.+|+..++....... . .
T Consensus 13 ~~~~F~~~---D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~--~-----~ 82 (149)
T PTZ00184 13 FKEAFSLF---DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT--D-----S 82 (149)
T ss_pred HHHHHHHH---cCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC--c-----H
Confidence 34555543 334459999999999988776666678899999999999999999999998886322111 1 1
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHhC
Q 002711 259 EEYAALIMEELDPHNLGYIELYNLEMLLLQA 289 (889)
Q Consensus 259 ~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 289 (889)
++.+..+|+.+|.|++|+|+.+||..++...
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 3456779999999999999999999999763
No 107
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.62 E-value=4.2e-07 Score=89.04 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhh
Q 002711 175 SKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKI 254 (889)
Q Consensus 175 ~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~ 254 (889)
++...+++.+++...|.+++|.|+++||..++..+....+++.+..+|..+|. +.|.|+.+||-.+|....... +
T Consensus 15 t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~--~-- 89 (160)
T COG5126 15 TEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG--D-- 89 (160)
T ss_pred CHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC--C--
Confidence 44555666666655555567999999999999999999999999999999999 999999999999996422111 1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 255 QERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 255 ~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
.++.+..+|+.+|.|+||+|+..|+..++....
T Consensus 90 ---~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg 122 (160)
T COG5126 90 ---KEEELREAFKLFDKDHDGYISIGELRRVLKSLG 122 (160)
T ss_pred ---cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc
Confidence 145566699999999999999999999998543
No 108
>PLN02964 phosphatidylserine decarboxylase
Probab=98.60 E-value=1.3e-07 Score=111.76 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=80.7
Q ss_pred cCcccHHHHHHHHHccc--CCCccchhhhccccc-CCCCHH---HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCC
Q 002711 140 VGTEGWGEVEKRFDELA--VDGMLPKSSFGQCIG-MNESKD---FASELFDALARRRGLTSSSITKSELRGFWEQITDQS 213 (889)
Q Consensus 140 ~~~~~~~~l~~~F~~ld--~dG~Ls~~ef~~~lg-~~~~~~---~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~ 213 (889)
....+++++++.|+.+| +||.+ ...+-..+| ..+++. +++++|+.+ |.++ +|.|+++||+.++..+....
T Consensus 137 f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~-D~Dg--dG~IdfdEFl~lL~~lg~~~ 212 (644)
T PLN02964 137 FVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIV-DYDE--DGQLSFSEFSDLIKAFGNLV 212 (644)
T ss_pred ccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHh-CCCC--CCeEcHHHHHHHHHHhccCC
Confidence 34457789999999999 78887 444545557 355544 378888854 3333 59999999999999887777
Q ss_pred hHHHHHHHHHHhcCCCCceeeHHHHHHHHHh
Q 002711 214 FDARLETFFDMVDKNLDGRITEEEVKEIIAL 244 (889)
Q Consensus 214 ~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~ 244 (889)
.+++++.+|+.||+|+||+|+.+||++++..
T Consensus 213 seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 213 AANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 8899999999999999999999999999974
No 109
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.57 E-value=1.8e-07 Score=84.71 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcC-CC-CceeeHHHHHHHHHhhhh---cccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 215 DARLETFFDMVDK-NL-DGRITEEEVKEIIALSAS---ANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 215 ee~l~~aF~~~Dk-d~-dG~It~eEl~~vl~~~~~---~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
...++.+|+.||. |+ ||+|+.+||+.+++.... ....+ ++.++.+|+++|.|++|.|+|+||..+|..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s------~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKD------PMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcccc------HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3568999999997 97 799999999999974211 11111 456777999999999999999999999875
No 110
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.56 E-value=2.5e-07 Score=100.62 Aligned_cols=157 Identities=18% Similarity=0.271 Sum_probs=103.7
Q ss_pred ccccccchhHHHHhccccccccccCcccHHHHHHHHHccc--CCCccchhhhcccc----cCCCCHHHHHHHHHHHHhhC
Q 002711 117 DKVDRTKSGAARALKGLKFITKNVGTEGWGEVEKRFDELA--VDGMLPKSSFGQCI----GMNESKDFASELFDALARRR 190 (889)
Q Consensus 117 ~~~~~~~s~~~~al~~L~~i~~~~~~~~~~~l~~~F~~ld--~dG~Ls~~ef~~~l----g~~~~~~~~~~lf~~l~~~d 190 (889)
.|+++-.++|-++|+. |..+. -.+|++.|+.+| ++|+|+....+.|+ |+.-. ..-|-..+...
T Consensus 442 qR~~~vEeSAlk~Lre-rl~s~------~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LP---Wr~L~~kla~~- 510 (631)
T KOG0377|consen 442 QRMGIVEESALKELRE-RLRSH------RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLP---WRLLRPKLANG- 510 (631)
T ss_pred HHhhHHHHHHHHHHHH-HHHhh------hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCc---HHHhhhhccCC-
Confidence 3445554555444433 32222 246899999999 89999999998887 44321 12222323323
Q ss_pred CCCCCcccHHHHHHHHHH--hccC----------ChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHH
Q 002711 191 GLTSSSITKSELRGFWEQ--ITDQ----------SFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERV 258 (889)
Q Consensus 191 ~~~~G~Id~~EF~~~~~~--~~~~----------~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~ 258 (889)
..+|.+.|.+-...+.. +... ...+.|..+|+..|+|++|.||.+||+.+.++..+.......
T Consensus 511 -s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~---- 585 (631)
T KOG0377|consen 511 -SDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAIS---- 585 (631)
T ss_pred -CcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcC----
Confidence 33488988887665432 1111 123468999999999999999999999999864332222211
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHhC
Q 002711 259 EEYAALIMEELDPHNLGYIELYNLEMLLLQA 289 (889)
Q Consensus 259 ~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 289 (889)
++++.++-+.+|.|+||.|++.||.+...-.
T Consensus 586 ~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 586 DDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 4455667888999999999999999988643
No 111
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.55 E-value=2.3e-07 Score=83.64 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhc-CCCCc-eeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 215 DARLETFFDMVD-KNLDG-RITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 215 ee~l~~aF~~~D-kd~dG-~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
.+.++.+|++|| +|++| .|+.+||+.+++..... .+.. ...++.++.+|+++|.|++|.|+|+||..+|..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~-~~~~--~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSD-FLDA--QKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHH-HccC--CCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 467999999997 99999 59999999999631111 0100 001445777999999999999999999998875
No 112
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=8.1e-07 Score=85.11 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHH
Q 002711 179 ASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERV 258 (889)
Q Consensus 179 ~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~ 258 (889)
.++-|+ ..+.+++|+||++|+..++...+-....+.+..+..-+|+++.|.|+.++|+.++........ .
T Consensus 35 i~e~f~---lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d-------t 104 (172)
T KOG0028|consen 35 IKEAFE---LFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD-------T 104 (172)
T ss_pred HHHHHH---hhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC-------c
Confidence 344455 334455699999999999988887788889999999999999999999999999863322211 2
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 259 EEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 259 ~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
.+.+..+|+.+|.|++|.|++.+|+.++.+-.
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhC
Confidence 55677899999999999999999999998743
No 113
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=98.54 E-value=4.7e-07 Score=106.67 Aligned_cols=204 Identities=13% Similarity=0.154 Sum_probs=110.4
Q ss_pred CccEEEEEEcCCCCCcccceeeeecCC--CCceEEEEEecCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCcc
Q 002711 605 SGQYIFVNCAAVSQFQWHPFSITSAPG--DDYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIP 682 (889)
Q Consensus 605 pGQyv~l~~p~is~~e~HPFTIaSaP~--~~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~ 682 (889)
|+.|+-=.+|. .+.++|||+|+|. .+.+.+.+-....-+..-.. ...|-.|+||.. .++|+.
T Consensus 409 P~~~ll~~lp~---L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~-------~r~GVcS~~L~~-l~~~~~----- 472 (645)
T KOG1158|consen 409 PLPHLLELLPR---LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGP-------KRYGVCSNWLSN-LKPGEK----- 472 (645)
T ss_pred CHHHHHHhCcc---ccccccccccCcccCCCEEEEEEEEeeeccCCCCC-------ccceehhhhHHh-cCCccc-----
Confidence 45444333344 5899999999984 44454444432111100000 011344555543 234441
Q ss_pred EEEEeCCCCCCCC--CCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEE
Q 002711 683 KLLIDGPYGAPAQ--DYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYW 760 (889)
Q Consensus 683 ~v~vdGPYG~~~~--~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W 760 (889)
+-.-+|-+.+.- +......++|||.|+||+||.++++.......++. ..... +.||+
T Consensus 473 -~~~~~~~~~s~frlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~-------------------~~~~~-~~Lf~ 531 (645)
T KOG1158|consen 473 -VPNPVPVGKSMFRLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGP-------------------KFGGG-MWLFF 531 (645)
T ss_pred -cCcceeecccceecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCc-------------------cCCcc-eEEEE
Confidence 111123333321 11233589999999999999999999887754431 12244 89999
Q ss_pred EeCCCCchhHHHHHHHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccC-CCCHHH
Q 002711 761 VTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFA-RPNWRT 839 (889)
Q Consensus 761 ~~R~~~~~~wf~~~l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~G-RPd~~~ 839 (889)
+||+++....+++++++..+.. ...++..-.++. .+.. +..++-. +-.-++
T Consensus 532 GcR~~~~d~LY~eE~~~~~~~~--~l~~l~~A~SRe---q~~~-----------------------k~YVQd~l~e~~d~ 583 (645)
T KOG1158|consen 532 GCRNSDEDYLYREEWEEYKKAG--ILTRLDVAFSRE---QTPK-----------------------KIYVQDRLREYADE 583 (645)
T ss_pred eCCCchHHHHHHHHHHHHHhcC--cchhheeeeecc---CCCC-----------------------ceehhhHHHHHHHH
Confidence 9999998778888887763321 222233322322 1000 0000000 011122
Q ss_pred HHHHHHhhCCCCeEEEEEeCChh-HHHHHHHHHHhhhcC
Q 002711 840 VFKHVAVKHTDERVGVFYCGAPG-LTGELRRLSQDFSRK 877 (889)
Q Consensus 840 v~~~~~~~~~~~~v~V~~CGP~~-m~~~vr~~~~~~~~~ 877 (889)
|.+-+.++ ...+|+||+.. |+++|.++..+...+
T Consensus 584 v~~~L~~~----~g~iYvCGd~~~Ma~dV~~~L~~i~~~ 618 (645)
T KOG1158|consen 584 VWELLKKE----GGHIYVCGDAKGMAKDVQDALVRILAK 618 (645)
T ss_pred HHHHHhcC----CcEEEEecCCccchHHHHHHHHHHHHh
Confidence 33333222 34799999998 999999988877644
No 114
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.53 E-value=2.1e-07 Score=84.62 Aligned_cols=85 Identities=25% Similarity=0.329 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCCCccc
Q 002711 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAPSQSA 294 (889)
Q Consensus 215 ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~~~~ 294 (889)
.++++.+|+.||+|++|.|+.+|++++++.. +++ ++.++.||..+|.|++|.|+|+||..+|...-..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~~~------~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~-- 76 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS----GLP------QTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK-- 76 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc----CCC------HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH--
Confidence 4578999999999999999999999999742 222 3456679999999999999999999988752211
Q ss_pred ccccchhhhhhhhhhccCCC
Q 002711 295 NLLTDSRVLSQMLSQRLVPT 314 (889)
Q Consensus 295 ~~~~~~~~l~~~~s~~l~~~ 314 (889)
.....++..+.++|.|.
T Consensus 77 ---~~g~~~~~~~~~~~~~~ 93 (96)
T smart00027 77 ---LNGYPIPASLPPSLIPP 93 (96)
T ss_pred ---HcCCCCCccCCHhhcCC
Confidence 12233555566666554
No 115
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=2.8e-07 Score=97.95 Aligned_cols=141 Identities=20% Similarity=0.134 Sum_probs=99.2
Q ss_pred ccHHHHHHHHHccc--CCCccchhhhcccccCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc-------cCC
Q 002711 143 EGWGEVEKRFDELA--VDGMLPKSSFGQCIGMNESKDFASELFDALARRRGLTSSSITKSELRGFWEQIT-------DQS 213 (889)
Q Consensus 143 ~~~~~l~~~F~~ld--~dG~Ls~~ef~~~lg~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~-------~~~ 213 (889)
+.-.++.++|.++| +||.|+.+|+..-+.....+....+.-..+...+.+.+|.|+++|++..+.... +..
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 34468999999999 899999999988874432222233333334444455569999999998877531 111
Q ss_pred ---hHH----HHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 002711 214 ---FDA----RLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLL 286 (889)
Q Consensus 214 ---~ee----~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l 286 (889)
... +=+.-|+.-|.|+||.+|.+||..++--. .+ + ...+=++++-|++.|+|+||+|+++||+.=|
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPE--e~--p---~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~ 226 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPE--EH--P---HMKDIVIAETLEDIDKNGDGKISLEEFIGDL 226 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChh--hc--c---hHHHHHHHHHHhhcccCCCCceeHHHHHhHH
Confidence 111 23567999999999999999999888310 01 1 1114456778999999999999999999977
Q ss_pred HhCC
Q 002711 287 LQAP 290 (889)
Q Consensus 287 ~~~p 290 (889)
-.++
T Consensus 227 ~~~~ 230 (325)
T KOG4223|consen 227 YSHE 230 (325)
T ss_pred hhcc
Confidence 7655
No 116
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.52 E-value=3.6e-07 Score=81.57 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=53.3
Q ss_pred HHHHHHHHH-hcCCCCc-eeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 216 ARLETFFDM-VDKNLDG-RITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 216 e~l~~aF~~-~Dkd~dG-~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
+.+..+|+. +|+|++| .||.+||+.++....... +.. ...+..++.+|+++|.|+||.|+|+||..+|..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~-~~~--~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASF-TKN--QKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHh-hcC--CCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 467889998 7899987 999999999997432100 000 001456777999999999999999999998865
No 117
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.48 E-value=3.3e-07 Score=85.76 Aligned_cols=64 Identities=22% Similarity=0.273 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 214 FDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 214 ~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
..+++..+|..+|+|+||.||.+||..+. + .. .+..++.+|+.+|.|+||+||++||...+ ..+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-l--~~---------~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl-~~~ 109 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR-L--DP---------NEHCIKPFFESCDLDKDGSISLDEWCYCF-IKE 109 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH-c--cc---------hHHHHHHHHHHHCCCCCCCCCHHHHHHHH-hCh
Confidence 45789999999999999999999999876 1 10 14456679999999999999999999999 444
No 118
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.47 E-value=3.9e-07 Score=76.47 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=50.9
Q ss_pred HHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 219 ETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 219 ~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
+.+|+.+|+|++|.|+.+|++.++... +.+ ++.++.+++.+|.|++|.|+|+||..+|..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g~~------~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----GLP------RSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----CCC------HHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 568999999999999999999999642 122 345677999999999999999999998865
No 119
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.45 E-value=6.4e-07 Score=79.83 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=52.5
Q ss_pred HHHHHHHHhcC-CC-CceeeHHHHHHHHHhh-hhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 217 RLETFFDMVDK-NL-DGRITEEEVKEIIALS-ASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 217 ~l~~aF~~~Dk-d~-dG~It~eEl~~vl~~~-~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
.+-.+|..||. |+ +|+|+.+||++++... ....+++ ++.++.+|+++|.|+||.|+|+||..+|..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t------~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQ------DAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 46778999998 78 8999999999999621 1122233 455677999999999999999999998864
No 120
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=98.42 E-value=2.7e-06 Score=100.48 Aligned_cols=185 Identities=15% Similarity=0.184 Sum_probs=109.7
Q ss_pred CcccceeeeecCCC--CceEEEEEecCcch-HHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCC-CCC
Q 002711 619 FQWHPFSITSAPGD--DYLSIHIRTLGDWT-SQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYG-APA 694 (889)
Q Consensus 619 ~e~HPFTIaSaP~~--~~l~l~Ir~~G~wT-~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG-~~~ 694 (889)
...+=|||+|+|.. +.+.+.|..+.--+ .+ ...|..|++|......|+ .+.|-..-+ .+.
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~----------~r~GvcS~~L~~~~~~g~------~i~v~v~~n~nf~ 434 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGR----------ERYGVCSGYLADLLEEGD------TIPVFVQPNKNFR 434 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCC----------cccccchHHHHhhhcCCC------eEEEEeccCCccc
Confidence 45677999999964 55666666552211 11 124666777765444455 455554444 232
Q ss_pred CCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCCchhHHHHH
Q 002711 695 QDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGV 774 (889)
Q Consensus 695 ~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~~~~wf~~~ 774 (889)
.+-.....++|||.|+||+||.++++....+.. ..++.|++++|++.+=..++++
T Consensus 435 lp~~~~~PiIMIG~GTGIAPFRafvq~r~~~~~-------------------------~gk~wLfFG~R~~~~DfLY~~E 489 (587)
T COG0369 435 LPEDPETPIIMIGPGTGIAPFRAFVQERAANGA-------------------------EGKNWLFFGCRHFTEDFLYQEE 489 (587)
T ss_pred cCCCCCCceEEEcCCCCchhHHHHHHHHHhccc-------------------------cCceEEEecCCCCccchhhHHH
Confidence 222222689999999999999999998655421 2378999999996654468887
Q ss_pred HHHHHhhcCCCcEEEEEeeeccccCCChhhHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhCCCCeEE
Q 002711 775 MNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVG 854 (889)
Q Consensus 775 l~el~~~~~~~~i~l~~y~T~~~~~~d~~s~~~~~~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~ 854 (889)
+++..... ...++....++.-++ +. .+|+. + |-+- +.+.++..+ + ..
T Consensus 490 we~~~~~G--~~~~l~~AfSRdq~~---Ki----YVQd~--------------l-----re~~-del~~~l~~---g-a~ 536 (587)
T COG0369 490 WEEYLKDG--VLTRLDLAFSRDQEE---KI----YVQDR--------------L-----REQA-DELWEWLEE---G-AH 536 (587)
T ss_pred HHHHHhcC--CceeEEEEEeecCCC---Cc----cHHHH--------------H-----HHhH-HHHHHHHHC---C-CE
Confidence 77644321 245555555543110 00 01100 0 1111 222233332 2 47
Q ss_pred EEEeC-ChhHHHHHHHHHHhhhcC
Q 002711 855 VFYCG-APGLTGELRRLSQDFSRK 877 (889)
Q Consensus 855 V~~CG-P~~m~~~vr~~~~~~~~~ 877 (889)
+|+|| +..|.++|.++..+...+
T Consensus 537 ~YVCGd~~~Ma~dV~~AL~~il~~ 560 (587)
T COG0369 537 IYVCGDAKGMAKDVEEALLDILAK 560 (587)
T ss_pred EEEeCCCccchHHHHHHHHHHHHh
Confidence 99999 899999999998887654
No 121
>PLN02964 phosphatidylserine decarboxylase
Probab=98.39 E-value=2.3e-06 Score=101.50 Aligned_cols=121 Identities=12% Similarity=0.181 Sum_probs=79.7
Q ss_pred CCccchhhhcccccC---CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcc-CChHHH---HHHHHHHhcCCCC
Q 002711 158 DGMLPKSSFGQCIGM---NESKDFASELFDALARRRGLTSSSITKSELRGFWEQITD-QSFDAR---LETFFDMVDKNLD 230 (889)
Q Consensus 158 dG~Ls~~ef~~~lg~---~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~-~~~ee~---l~~aF~~~Dkd~d 230 (889)
...++.+++...-.. .-.....+++.++|+..|.+++|.| +..++..+.. ...+++ ++.+|+.+|.|+|
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~Dgd 193 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDED 193 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 345555555433222 1122233444444445555556887 4445555542 333333 8999999999999
Q ss_pred ceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 231 GRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 231 G~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
|.|+.+||..++.... ...+ ++.+..+|+.+|.|+||+|+++||+.+|...+
T Consensus 194 G~IdfdEFl~lL~~lg--~~~s------eEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 194 GQLSFSEFSDLIKAFG--NLVA------ANKKEELFKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred CeEcHHHHHHHHHHhc--cCCC------HHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 9999999999997422 1111 44577799999999999999999999998754
No 122
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.36 E-value=1.1e-06 Score=78.33 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcC--CCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 215 DARLETFFDMVDK--NLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 215 ee~l~~aF~~~Dk--d~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
.+.++.+|.+||+ |++|.|+.+||+.+++..... .++ ....++.++.||.++|.|++|.|+|+||..+|..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~-~~~--~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPN-FLK--NQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhh-hcc--CCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 3568899999999 899999999999999641111 110 0011445777999999999999999999998865
No 123
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.28 E-value=4.1e-06 Score=84.96 Aligned_cols=104 Identities=22% Similarity=0.253 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc-cCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchh
Q 002711 175 SKDFASELFDALARRRGLTSSSITKSELRGFWEQIT-DQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSK 253 (889)
Q Consensus 175 ~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~-~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~ 253 (889)
++..+++++..+-.... +|.++.++|......+- .++.+.-.+.+|+.||+|+||.|+.+|+-..+.....+.
T Consensus 24 ~~~ei~~~Yr~Fk~~cP--~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt---- 97 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECP--SGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT---- 97 (193)
T ss_pred CHHHHHHHHHHhcccCC--CCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc----
Confidence 45567777776655554 49999999999988754 577788899999999999999999999766665332221
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 254 IQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 254 ~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
+++-.+-.|+.+|.|+||+|+++|+.+++..
T Consensus 98 ----~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 98 ----LEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred ----HHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 2334444699999999999999999998864
No 124
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.28 E-value=1.4e-06 Score=91.90 Aligned_cols=138 Identities=12% Similarity=0.056 Sum_probs=107.4
Q ss_pred ccHHHHHHHHHccc------CCCccchhhhcccccCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCC-hH
Q 002711 143 EGWGEVEKRFDELA------VDGMLPKSSFGQCIGMNESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQS-FD 215 (889)
Q Consensus 143 ~~~~~l~~~F~~ld------~dG~Ls~~ef~~~lg~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~-~e 215 (889)
-.|.+|.+..+... +.+.|-..||..-+....+ .....+|.+ ++..+ +|.+||.|....+..++... ..
T Consensus 220 L~~~gl~k~ld~y~~var~~kg~~igi~efa~~l~vpvs-d~l~~~f~L-Fde~~--tg~~D~re~v~~lavlc~p~~t~ 295 (412)
T KOG4666|consen 220 LPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNLRVPVS-DKLAPTFML-FDEGT--TGNGDYRETVKTLAVLCGPPVTP 295 (412)
T ss_pred CChHHHHHHHhhHHHHHHhccCCCcceeEeeeeeecchh-hhhhhhhhe-ecCCC--CCcccHHHHhhhheeeeCCCCcH
Confidence 34566666555443 7889999999999877654 556778874 44444 49999999999888776544 56
Q ss_pred HHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCCCcc
Q 002711 216 ARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAPSQS 293 (889)
Q Consensus 216 e~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~~~ 293 (889)
+-++.+|++||.+.||.+..++|.-+++.......+. +..+|.+.|...||+|+|+||++++..+|...
T Consensus 296 ~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~---------v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a 364 (412)
T KOG4666|consen 296 VIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLR---------VPVLFPSIEQKDDPKIYASNFRKFAATEPNLA 364 (412)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhcCcceee---------ccccchhhhcccCcceeHHHHHHHHHhCchhh
Confidence 7899999999999999999999998887543322222 23389999999999999999999999999764
No 125
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.21 E-value=2.4e-06 Score=71.65 Aligned_cols=61 Identities=25% Similarity=0.400 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccC----ChHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 002711 179 ASELFDALARRRGLTSSSITKSELRGFWEQITDQ----SFDARLETFFDMVDKNLDGRITEEEVKEII 242 (889)
Q Consensus 179 ~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~----~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl 242 (889)
..++|+.+|.++ +|.|+.+||..++..+... ..++.++.+|+.+|+|+||.|+.+|+..++
T Consensus 2 l~~~F~~~D~d~---~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDG---DGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTS---SSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCc---cCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 356777544333 4999999999999887643 345667888999999999999999998764
No 126
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.20 E-value=3e-06 Score=93.85 Aligned_cols=133 Identities=20% Similarity=0.259 Sum_probs=103.9
Q ss_pred HHHHHHHccc--CCCccchhhhcccccCCCCHHHHHHHHHHHHhhCC-CCCCcccHHHHHHHHHHhccCChHHHHHHHHH
Q 002711 147 EVEKRFDELA--VDGMLPKSSFGQCIGMNESKDFASELFDALARRRG-LTSSSITKSELRGFWEQITDQSFDARLETFFD 223 (889)
Q Consensus 147 ~l~~~F~~ld--~dG~Ls~~ef~~~lg~~~~~~~~~~lf~~l~~~d~-~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~ 223 (889)
.+.-.|-.|| .||.|+.+++...-.-..+.-++++||+...+... ..+|.+||++|+.++....+.....-++..|+
T Consensus 279 viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFr 358 (493)
T KOG2562|consen 279 VIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFR 358 (493)
T ss_pred HHHHHHhhhccccccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhhee
Confidence 3444588898 89999999998765333457889999994333221 23489999999999998888888888999999
Q ss_pred HhcCCCCceeeHHHHHHHHHh------hhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 002711 224 MVDKNLDGRITEEEVKEIIAL------SASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEM 284 (889)
Q Consensus 224 ~~Dkd~dG~It~eEl~~vl~~------~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~ 284 (889)
..|.|+||.|+.+|++.+... +.....++ .++...+|+..+-+.+.++|+++||+.
T Consensus 359 clDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~-----fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 359 CLDLDGDGILTLNELRYFYEEQLQRMECMGQEALP-----FEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred eeeccCCCcccHHHHHHHHHHHHHHHHhcCCCccc-----HHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 999999999999999988753 11112222 266777899999999999999999987
No 127
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.19 E-value=4.2e-06 Score=67.28 Aligned_cols=53 Identities=28% Similarity=0.451 Sum_probs=42.1
Q ss_pred CCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 229 LDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 229 ~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
.+|.||.+||+.++.... ...++ ++.++.+|..+|.|+||+|+|+||..+|..
T Consensus 1 ~~G~i~~~~~~~~l~~~g-~~~~s------~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLG-IKDLS------EEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTT-SSSSC------HHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhC-CCCCC------HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999995321 11133 445778999999999999999999999864
No 128
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.17 E-value=4.8e-06 Score=67.55 Aligned_cols=61 Identities=30% Similarity=0.417 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 002711 218 LETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLL 286 (889)
Q Consensus 218 l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l 286 (889)
++.+|+.+|.|++|.|+.+|+..+++.... ..+ ++.+..+++.+|.|++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~--~~~------~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE--GLS------EEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCC------HHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 678899999999999999999999974321 111 4556679999999999999999998865
No 129
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.08 E-value=9e-06 Score=82.24 Aligned_cols=123 Identities=16% Similarity=0.107 Sum_probs=94.3
Q ss_pred ccHHHHHHHHHcccCCCccchhhhcccccCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHH
Q 002711 143 EGWGEVEKRFDELAVDGMLPKSSFGQCIGMNESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFF 222 (889)
Q Consensus 143 ~~~~~l~~~F~~ld~dG~Ls~~ef~~~lg~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF 222 (889)
+-..-+-.+|+. +.+|+|..+||.+....- ...+.+|.-+| .|++|+|+..|+..++..++-..+++-++.++
T Consensus 94 ~TcrlmI~mfd~-~~~G~i~f~EF~~Lw~~i---~~Wr~vF~~~D---~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv 166 (221)
T KOG0037|consen 94 ETCRLMISMFDR-DNSGTIGFKEFKALWKYI---NQWRNVFRTYD---RDRSGTIDSSELRQALTQLGYRLSPQFYNLLV 166 (221)
T ss_pred HHHHHHHHHhcC-CCCCccCHHHHHHHHHHH---HHHHHHHHhcc---cCCCCcccHHHHHHHHHHcCcCCCHHHHHHHH
Confidence 444444445542 289999999998877431 12466777444 34459999999999999999999999999999
Q ss_pred HHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcc--cHHHHHHHH
Q 002711 223 DMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYI--ELYNLEMLL 286 (889)
Q Consensus 223 ~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~I--s~~EF~~~l 286 (889)
+.||.-++|.|..+++.+++.... ..-+.|++.|++.+|.| +|+||..+.
T Consensus 167 ~kyd~~~~g~i~FD~FI~ccv~L~--------------~lt~~Fr~~D~~q~G~i~~~y~dfl~~t 218 (221)
T KOG0037|consen 167 RKYDRFGGGRIDFDDFIQCCVVLQ--------------RLTEAFRRRDTAQQGSITISYDDFLQMT 218 (221)
T ss_pred HHhccccCCceeHHHHHHHHHHHH--------------HHHHHHHHhccccceeEEEeHHHHHHHh
Confidence 999999999999999998875211 11227999999999975 789998875
No 130
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.97 E-value=2.6e-05 Score=69.58 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCC--CCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 217 RLETFFDMVDKN--LDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 217 ~l~~aF~~~Dkd--~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
.+-..|..|+.+ ++|.|+.+||+.++...... .++ ....++.++.+|+++|.|+||.|+|+||..+|..
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~-~~t--~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPN-FLK--KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhH-hhc--cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 567789999865 48999999999999632211 111 0011456778999999999999999999999875
No 131
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.95 E-value=2.2e-05 Score=63.06 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=45.0
Q ss_pred CCcccHHHHHHHHHHhccC-ChHHHHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 194 SSSITKSELRGFWEQITDQ-SFDARLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 194 ~G~Id~~EF~~~~~~~~~~-~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
+|.|+.+||..++..++.. ..++.++.+|..+|.|+||+|+.+||..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 5999999999999767666 7778899999999999999999999999875
No 132
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.94 E-value=4.7e-05 Score=83.86 Aligned_cols=127 Identities=21% Similarity=0.300 Sum_probs=91.4
Q ss_pred HHHHHccc--CCCccchhhhcccc---------cC------CCC----HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 002711 149 EKRFDELA--VDGMLPKSSFGQCI---------GM------NES----KDFASELFDALARRRGLTSSSITKSELRGFWE 207 (889)
Q Consensus 149 ~~~F~~ld--~dG~Ls~~ef~~~l---------g~------~~~----~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~ 207 (889)
+=.|+.+| +||.|+++||.... |+ ... .+....|..-+.-.|++ ++++++||++++.
T Consensus 236 ~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~--~kLs~deF~~F~e 313 (489)
T KOG2643|consen 236 RIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGN--GKLSIDEFLKFQE 313 (489)
T ss_pred eeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCC--ccccHHHHHHHHH
Confidence 34578888 99999999997765 22 001 12223344445555664 9999999999997
Q ss_pred HhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 002711 208 QITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLL 287 (889)
Q Consensus 208 ~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~ 287 (889)
.+ .+|-++.=|..+|+..+|.|++.+|.++|-.....+... -+.+++..-++++.+ +-.||++||++...
T Consensus 314 ~L----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~-----k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 314 NL----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKK-----KHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HH----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHh-----HHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 66 477788889999999999999999999986443333222 145677788888877 55699999998764
No 133
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.93 E-value=1.3e-05 Score=55.60 Aligned_cols=27 Identities=41% Similarity=0.575 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 217 RLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 217 ~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
+++.+|+.||+|+||+|+.+||+.+++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 478899999999999999999999985
No 134
>PF14658 EF-hand_9: EF-hand domain
Probab=97.93 E-value=2.3e-05 Score=64.89 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=51.7
Q ss_pred HHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHh
Q 002711 220 TFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNL-GYIELYNLEMLLLQ 288 (889)
Q Consensus 220 ~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~d-G~Is~~EF~~~l~~ 288 (889)
.+|++||.++.|.|...+|..+|+..+..+. + |..++.+..++|+++. |.|++++|...|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p-~------e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSP-E------ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCC-c------HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999986654221 1 3455669999999998 99999999999975
No 135
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=97.85 E-value=5.7e-05 Score=78.09 Aligned_cols=127 Identities=15% Similarity=0.090 Sum_probs=84.1
Q ss_pred ecCCcchhHHHHHHHHHHHHhhhhhhhhhhcccccccccCcccccCccCccCCCCCCcccccccccchhHHHHHHHHHHH
Q 002711 411 VPFDDNINFHKVIAVGIAIGVGLHAGAHLTCDFPRLLHATDEEYEPMKPFFGDDRPDDYWWFVKGTEGWTGVVMVVLMAI 490 (889)
Q Consensus 411 ~~~d~~~~fHr~ig~~~~~~~~lH~~~~l~~~f~~~~~~~~~~~~~l~~~~~~~~~~~yw~~~~~~~g~tG~i~lv~~~i 490 (889)
.+.+..+.+||++|..+++++++|.+.++..+.. ..++ ..+.+ ..+...-+.|.+++++++.
T Consensus 68 ~~~~~l~~~RR~LGl~af~~a~lH~~~y~~~~~~-------~~~~---~~~~~--------i~~~~~i~~G~ia~~lLl~ 129 (205)
T PRK05419 68 TGQPLLIRTRRLLGLWAFFYATLHLLSYLLLDLG-------LDWS---LLGKE--------IVKRPYITVGMAAFLILLP 129 (205)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccHH---HHHHH--------HHhchHHHHHHHHHHHHHH
Confidence 3456889999999999999999999887654210 0000 01110 0011112458888888889
Q ss_pred HHHhhhhhHhhccCCchhhhhccccchhHHHHHHHHHHHHHHHHHHhhhhhhccccccceehhhhhhhhhhHhHHHHHHH
Q 002711 491 SYTLAQPWFRRNRLNLPKILKKLTGFNAFWYSHHLFVIVYVLFIIHGYFLYLSKKWYKRTTWMYLAVPVLLYACERLIRA 570 (889)
Q Consensus 491 ~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~l~~~w~~~~~w~y~~~~~~l~~~drl~R~ 570 (889)
+.++|..+.||+. +| .|..+|.+..+++++.++|..... .... .....|.++ ++++..-|+.+.
T Consensus 130 LaiTS~~~~~rrL-----------g~-~Wk~LH~l~Y~a~~L~~~H~~~~~-k~~~--~~~~~y~~~-~~~ll~~R~~~~ 193 (205)
T PRK05419 130 LALTSTRASQRRL-----------GK-RWQKLHRLVYLIAILAPLHYLWSV-KSDS--PEPLIYAAI-VAVLLALRLKKL 193 (205)
T ss_pred HHHHhhHHHHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHHHh-cccc--ccHHHHHHH-HHHHHHHHHHHH
Confidence 9999999998873 67 799999999998898899955431 1111 234456544 345555687776
Q ss_pred H
Q 002711 571 F 571 (889)
Q Consensus 571 ~ 571 (889)
.
T Consensus 194 ~ 194 (205)
T PRK05419 194 R 194 (205)
T ss_pred H
Confidence 5
No 136
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.84 E-value=6e-05 Score=82.56 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=106.8
Q ss_pred HHhccccccccccCcccHHHHHHHHHccc--CCCccchhhhcccccCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 002711 128 RALKGLKFITKNVGTEGWGEVEKRFDELA--VDGMLPKSSFGQCIGMNESKDFASELFDALARRRGLTSSSITKSELRGF 205 (889)
Q Consensus 128 ~al~~L~~i~~~~~~~~~~~l~~~F~~ld--~dG~Ls~~ef~~~lg~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~ 205 (889)
+-.+||..+....+.. +..+..|..+| .||.++.+||...+.-. +....++|+.+|.+. +|.|+-+|...+
T Consensus 35 ~l~k~~~~l~~~~~~~--~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~--E~~l~~~F~~iD~~h---dG~i~~~Ei~~~ 107 (463)
T KOG0036|consen 35 QLEKGLEKLDHPKPNY--EAAKMLFSAMDANRDGRVDYSEFKRYLDNK--ELELYRIFQSIDLEH---DGKIDPNEIWRY 107 (463)
T ss_pred HHHHHHHhcCCCCCch--HHHHHHHHhcccCcCCcccHHHHHHHHHHh--HHHHHHHHhhhcccc---CCccCHHHHHHH
Confidence 3344444444443333 44688999999 89999999999988553 344567777655544 499999999999
Q ss_pred HHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 002711 206 WEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEML 285 (889)
Q Consensus 206 ~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~ 285 (889)
+..+.....+++++.+|+..|+|+++.|+.+|.++.+.+.. .+.+++ .-..|+. +.-+|.+.|..|. |+|...
T Consensus 108 l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p----~s~i~d-i~~~W~h-~~~idigE~~~iP-dg~s~~ 180 (463)
T KOG0036|consen 108 LKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP----ESDLED-IYDFWRH-VLLIDIGEDAVLP-DGDSKL 180 (463)
T ss_pred HHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC----hhHHHH-HHHhhhh-heEEEccccccCC-cchHHH
Confidence 99999899999999999999999999999999999986422 122222 1222333 2356888888888 777766
Q ss_pred HHhC
Q 002711 286 LLQA 289 (889)
Q Consensus 286 l~~~ 289 (889)
..+.
T Consensus 181 e~~~ 184 (463)
T KOG0036|consen 181 ENDS 184 (463)
T ss_pred Hhcc
Confidence 5543
No 137
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=97.83 E-value=2.9e-05 Score=86.66 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=78.0
Q ss_pred cEEEEEEcCCCCCcccceeeeecCCCCceEEEEEecCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEE
Q 002711 607 QYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLI 686 (889)
Q Consensus 607 Qyv~l~~p~is~~e~HPFTIaSaP~~~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~v 686 (889)
+|++=.+|.+ ..+.|||+|.|+...+.+.|..+.- +..|+ ++..|-.|.|+. .+++|+ .+.+.|
T Consensus 357 ~yl~d~~P~I---rPR~fSIas~~~~~~leL~VAiV~y-kT~l~-------~pRrGlCS~wl~-sL~~g~----~i~~~v 420 (574)
T KOG1159|consen 357 DYLLDLLPVI---RPRAFSIASSPGAHHLELLVAIVEY-KTILK-------EPRRGLCSNWLA-SLKPGD----EIPIKV 420 (574)
T ss_pred HHHHHhcccc---ccceeeeccCCCCCceeEEEEEEEE-eeecc-------ccccchhHHHHh-hcCCCC----eEEEEE
Confidence 4555456666 6799999999998888887766632 22222 133455666654 344554 234444
Q ss_pred eCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHHHhhhhhcccccccCCCCCcCCCCCCCccceEEEEEEeCCCC
Q 002711 687 DGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQG 766 (889)
Q Consensus 687 dGPYG~~~~~~~~~~~vllVagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~W~~R~~~ 766 (889)
. =|...-+..-...++|||-|+||||+.+++++-+.+. ....-++++||..+
T Consensus 421 ~--~g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~--------------------------~~~~~lFfGCR~K~ 472 (574)
T KOG1159|consen 421 R--PGTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQG--------------------------DKENVLFFGCRNKD 472 (574)
T ss_pred e--cCccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhhc--------------------------cCCceEEEecccCC
Confidence 3 1332222222347999999999999999999866431 12236788999876
Q ss_pred chhHHHHHHHHH
Q 002711 767 SFEWFRGVMNEV 778 (889)
Q Consensus 767 ~~~wf~~~l~el 778 (889)
.-..|.+...+.
T Consensus 473 ~Df~y~~eW~~~ 484 (574)
T KOG1159|consen 473 KDFLYEDEWTEL 484 (574)
T ss_pred ccccccchhhhh
Confidence 433455444333
No 138
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.80 E-value=0.00011 Score=81.50 Aligned_cols=140 Identities=20% Similarity=0.302 Sum_probs=97.5
Q ss_pred HHHHHHHHccc-----CCCccchhhhcccc-cC---CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHH
Q 002711 146 GEVEKRFDELA-----VDGMLPKSSFGQCI-GM---NESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDA 216 (889)
Q Consensus 146 ~~l~~~F~~ld-----~dG~Ls~~ef~~~l-g~---~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee 216 (889)
++|+..|.+++ +.-..+-++|.... |+ ...++...+|....+|.-. ||-|+|+||..+-..+| .+|.
T Consensus 33 ~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tK--Dglisf~eF~afe~~lC--~pDa 108 (694)
T KOG0751|consen 33 KELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTK--DGLISFQEFRAFESVLC--APDA 108 (694)
T ss_pred HHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcc--cccccHHHHHHHHhhcc--CchH
Confidence 45666666665 34467788887653 33 2334556666666666444 59999999998866655 4578
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccch---------------------------hhHHHHHHHHHHHHHhc
Q 002711 217 RLETFFDMVDKNLDGRITEEEVKEIIALSASANKLS---------------------------KIQERVEEYAALIMEEL 269 (889)
Q Consensus 217 ~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~---------------------------~~~~~~~e~~~~i~~e~ 269 (889)
.-..+|+.||+.++|.+|.+++++++....-.+... .+.+-.+|.+.+.|++-
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~ 188 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREK 188 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999997321111110 11222455677788888
Q ss_pred CCCCCCcccHHHHHHHHHhC
Q 002711 270 DPHNLGYIELYNLEMLLLQA 289 (889)
Q Consensus 270 D~d~dG~Is~~EF~~~l~~~ 289 (889)
|..++|.||--+|...|...
T Consensus 189 d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 189 DKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred cccCCCeeeeechHhhhhhh
Confidence 99999999888888887654
No 139
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.77 E-value=2.4e-05 Score=54.28 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 262 AALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 262 ~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
++.+|+.+|.|+||+|+++||..+|++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455999999999999999999999975
No 140
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.67 E-value=0.00012 Score=82.84 Aligned_cols=70 Identities=23% Similarity=0.214 Sum_probs=54.0
Q ss_pred cHHHHHHHHHH--hccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCC
Q 002711 198 TKSELRGFWEQ--ITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLG 275 (889)
Q Consensus 198 d~~EF~~~~~~--~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG 275 (889)
..++++..... -+....++.++.+|++||+|+||.|+.+|+.. ++.+|..+|.|+||
T Consensus 314 ~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~DG 372 (391)
T PRK12309 314 TLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHDG 372 (391)
T ss_pred HHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCCC
Confidence 34445443222 23345678899999999999999999999832 13389999999999
Q ss_pred cccHHHHHHHHHh
Q 002711 276 YIELYNLEMLLLQ 288 (889)
Q Consensus 276 ~Is~~EF~~~l~~ 288 (889)
.|+++||.+.+..
T Consensus 373 ~Is~eEf~~~~~~ 385 (391)
T PRK12309 373 KITPEEMRAGLGA 385 (391)
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998864
No 141
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.65 E-value=0.00018 Score=64.99 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhCCCCCC-cccHHHHHHHHHHh-----ccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhh
Q 002711 179 ASELFDALARRRGLTSS-SITKSELRGFWEQI-----TDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALS 245 (889)
Q Consensus 179 ~~~lf~~l~~~d~~~~G-~Id~~EF~~~~~~~-----~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~ 245 (889)
+.++|+.+++.|++ | +|+.+||..++... .....++.+..+++.+|+|+||.|+.+||..++...
T Consensus 12 ~~~~F~~~dd~dgd--g~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 12 LIRIFHNYSGKEGD--RYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHccCCC--CCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 45668877766553 7 59999999998652 333466789999999999999999999999988643
No 142
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.61 E-value=0.00017 Score=71.60 Aligned_cols=66 Identities=20% Similarity=0.295 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhc-ccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 216 ARLETFFDMVDKNLDGRITEEEVKEIIALSASA-NKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 216 e~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~-~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
.....+|+.||.|.||+|+..||+.+|...... ..+ -.+.||+++|-|.||+|||-||.-+....-
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL---------~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHL---------GLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhH---------HHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 357789999999999999999999999643221 122 245699999999999999999998887644
No 143
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.60 E-value=0.00022 Score=63.57 Aligned_cols=64 Identities=19% Similarity=0.377 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhCCCCCC-cccHHHHHHHHHH-----hccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHh
Q 002711 179 ASELFDALARRRGLTSS-SITKSELRGFWEQ-----ITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIAL 244 (889)
Q Consensus 179 ~~~lf~~l~~~d~~~~G-~Id~~EF~~~~~~-----~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~ 244 (889)
..++|+.+++.++ +| .|+.+||..++.. +.....++.+..+++.+|+|+||.|+.+||..++..
T Consensus 10 l~~aF~~fD~~dg--dG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 10 LIDVFHQYSGREG--DKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHhcccCC--CcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4667776554444 48 5999999999987 666667788999999999999999999999888863
No 144
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.60 E-value=0.00015 Score=73.72 Aligned_cols=93 Identities=18% Similarity=0.296 Sum_probs=64.5
Q ss_pred HHHHHHHcccCCCc-cchhhhcccccC---CCC-HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcc-CC------h
Q 002711 147 EVEKRFDELAVDGM-LPKSSFGQCIGM---NES-KDFASELFDALARRRGLTSSSITKSELRGFWEQITD-QS------F 214 (889)
Q Consensus 147 ~l~~~F~~ld~dG~-Ls~~ef~~~lg~---~~~-~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~-~~------~ 214 (889)
++-++|... ++|. |+.++|...+.. ... +....=.|+++|. +++|.|+.+|+..++..+.. .. .
T Consensus 70 rI~~~f~~~-~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~---~~~G~I~reel~~iv~~~~~~~~~~~~e~~ 145 (187)
T KOG0034|consen 70 RIIDRFDTD-GNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDL---DGDGFISREELKQILRMMVGENDDMSDEQL 145 (187)
T ss_pred HHHHHHhcc-CCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcC---CCCCcCcHHHHHHHHHHHHccCCcchHHHH
Confidence 344444432 5555 999999998843 122 2234445554333 33499999999999987533 22 2
Q ss_pred HHHHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 215 DARLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 215 ee~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
++.+...|..+|.|+||+|+.+|+.+++.
T Consensus 146 ~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 146 EDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 34578889999999999999999999995
No 145
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.58 E-value=0.00024 Score=57.33 Aligned_cols=60 Identities=23% Similarity=0.384 Sum_probs=50.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 002711 180 SELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEII 242 (889)
Q Consensus 180 ~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl 242 (889)
..+|..++ . +++|.|+++||..++........++.++.+|+.+|.|++|.|+.+|+..++
T Consensus 3 ~~~f~~~d-~--~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFD-K--DGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhC-C--CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 45666443 2 335999999999999988878888999999999999999999999998765
No 146
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.57 E-value=0.00017 Score=63.99 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 217 RLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 217 ~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
-|-..|..|-. +.|.+++.||+++|...... -+.... -.+.++.+|+.+|.|+||.|+|+||..++..
T Consensus 9 ~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~-~l~~~~--d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 9 KMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSE-FLKNQN--DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHH-HHcCCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35567888873 35699999999999742211 111111 1556788999999999999999999998864
No 147
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.56 E-value=0.00028 Score=62.99 Aligned_cols=65 Identities=25% Similarity=0.238 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hccCChH-HHHHHHHHHhcCCCCceeeHHHHHHHHHhh
Q 002711 179 ASELFDALARRRGLTSSSITKSELRGFWEQ-ITDQSFD-ARLETFFDMVDKNLDGRITEEEVKEIIALS 245 (889)
Q Consensus 179 ~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~-~~~~~~e-e~l~~aF~~~Dkd~dG~It~eEl~~vl~~~ 245 (889)
..+.|..++.. +++|+|+.+||...+.. +.....+ +.++.+|+..|.|+||.|+.+||..+|...
T Consensus 10 l~~~F~~fd~~--~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 10 LVSNFHKASVK--GGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHhCC--CCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45677765553 33599999999999988 6654445 789999999999999999999999988643
No 148
>COG2717 Predicted membrane protein [Function unknown]
Probab=97.55 E-value=0.00062 Score=69.51 Aligned_cols=124 Identities=17% Similarity=0.170 Sum_probs=85.9
Q ss_pred CcchhHHHHHHHHHHHHhhhhhhhhhhcccccccccCcccccCccCccCCCCCCcccccccccchhHHHHHHHHHHHHHH
Q 002711 414 DDNINFHKVIAVGIAIGVGLHAGAHLTCDFPRLLHATDEEYEPMKPFFGDDRPDDYWWFVKGTEGWTGVVMVVLMAISYT 493 (889)
Q Consensus 414 d~~~~fHr~ig~~~~~~~~lH~~~~l~~~f~~~~~~~~~~~~~l~~~~~~~~~~~yw~~~~~~~g~tG~i~lv~~~i~~~ 493 (889)
...+.+-|.+|.++++++++|...|+..|- +++ +...+.+ .........|++++++|..+.+
T Consensus 71 ~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l---------~~~-~~~~~~d--------~~~rpyitiG~iaflll~pLal 132 (209)
T COG2717 71 PKLIRIRRALGLWAFFYALLHFTAYLVLDL---------GLD-LALLGLD--------LLKRPYITIGMIAFLLLIPLAL 132 (209)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcc-HHHhhHH--------HHHhHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999876521 111 1111111 1112234569999999999999
Q ss_pred hhhhhHhhccCCchhhhhccccchhHHHHHHHHHHHHHHHHHHhhhhhhccccccceehhhhhhhhhhHhHHHHHHHH
Q 002711 494 LAQPWFRRNRLNLPKILKKLTGFNAFWYSHHLFVIVYVLFIIHGYFLYLSKKWYKRTTWMYLAVPVLLYACERLIRAF 571 (889)
Q Consensus 494 ~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~l~~~w~~~~~w~y~~~~~~l~~~drl~R~~ 571 (889)
+|..++||+. + ..|...|.+..+++++..+|-.+.. .. ....++.|.++ .+.|.+.|+.+..
T Consensus 133 TS~k~~~rrl-----------G-~rW~~LHrLvYl~~~L~~lH~~~s~--K~-~~~~~vlY~ii-~~~lll~R~~k~~ 194 (209)
T COG2717 133 TSFKWVRRRL-----------G-KRWKKLHRLVYLALILGALHYLWSV--KI-DMPEPVLYAII-FAVLLLLRVTKTR 194 (209)
T ss_pred HhhHHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHhc--Cc-cchHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999984 6 7888999999999999999976521 11 12234566544 4567777877665
No 149
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.54 E-value=0.00011 Score=51.82 Aligned_cols=27 Identities=44% Similarity=0.623 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 217 RLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 217 ~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
+++.+|+.||+|+||+|+.+||+.+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578999999999999999999999986
No 150
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.50 E-value=0.00014 Score=48.62 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCCCceeeHHHHHHHH
Q 002711 218 LETFFDMVDKNLDGRITEEEVKEII 242 (889)
Q Consensus 218 l~~aF~~~Dkd~dG~It~eEl~~vl 242 (889)
|+.+|+.+|+|+||.||.+|++.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5779999999999999999999864
No 151
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.50 E-value=0.00039 Score=62.57 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhCCCCCC-cccHHHHHHHHHH-hcc----CChHHHHHHHHHHhcCCCCceeeHHHHHHHHHh
Q 002711 177 DFASELFDALARRRGLTSS-SITKSELRGFWEQ-ITD----QSFDARLETFFDMVDKNLDGRITEEEVKEIIAL 244 (889)
Q Consensus 177 ~~~~~lf~~l~~~d~~~~G-~Id~~EF~~~~~~-~~~----~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~ 244 (889)
+.+.+.|+.+|+.++ +| .|+.+||..++.. ++. ...++.++.+|+.+|.|++|.|+.+||..++..
T Consensus 9 ~~l~~~F~~fDd~dg--~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEG--DKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccC--CCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 446778887664555 49 5999999999965 322 345778999999999999999999999988864
No 152
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00019 Score=79.30 Aligned_cols=127 Identities=13% Similarity=0.269 Sum_probs=82.8
Q ss_pred HHHHHHccc-C-CCccchhhhcccc----cCCC--CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHH
Q 002711 148 VEKRFDELA-V-DGMLPKSSFGQCI----GMNE--SKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLE 219 (889)
Q Consensus 148 l~~~F~~ld-~-dG~Ls~~ef~~~l----g~~~--~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~ 219 (889)
++-.|..+| + +|.|+..+|++.+ +.+. ......++-+-+.+. +-.|+++||.++..-+.+...-+
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~----~~gISl~Ef~~Ff~Fl~~l~dfd--- 392 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD----GKGISLQEFKAFFRFLNNLNDFD--- 392 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC----CCCcCHHHHHHHHHHHhhhhHHH---
Confidence 344688888 4 4899999998876 2221 112334444422221 35799999988876655433222
Q ss_pred HHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhC
Q 002711 220 TFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQA 289 (889)
Q Consensus 220 ~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 289 (889)
.|..+| ....+.|+..|++.+..... +..|+ +.+++.+|.-+|.|+||.++++||..+|++.
T Consensus 393 ~Al~fy-~~Ag~~i~~~~f~raa~~vt-GveLS------dhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 393 IALRFY-HMAGASIDEKTFQRAAKVVT-GVELS------DHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHHHHH-HHcCCCCCHHHHHHHHHHhc-Ccccc------cceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 233333 23567899999998886432 22333 4567779999999999999999999999863
No 153
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.37 E-value=0.00063 Score=61.46 Aligned_cols=64 Identities=22% Similarity=0.410 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH-h----ccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 179 ASELFDALARRRGLTSSSITKSELRGFWEQ-I----TDQSFDARLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 179 ~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~-~----~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
..+.|+.+|+.++ ++|.|+.+|+..++.. . .....++.++.+|+.+|.|++|.|+.+||..++.
T Consensus 10 l~~~F~~~D~~dg-~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 10 LILTFHRYAGKDG-DKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHhccCC-CCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4566776665332 1399999999999875 2 3345678899999999999999999999998886
No 154
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.32 E-value=0.0015 Score=61.64 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCC--CCceeeHHHHHHHHHhhhhcccch
Q 002711 175 SKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKN--LDGRITEEEVKEIIALSASANKLS 252 (889)
Q Consensus 175 ~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd--~dG~It~eEl~~vl~~~~~~~~l~ 252 (889)
..+...++|..+|.. + +|+|++.+--+.+..++....++.+.+.-..++++ +--+|+.|++--++..... |+
T Consensus 9 ~~~e~ke~F~lfD~~-g--D~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak-nk-- 82 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRT-G--DGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK-NK-- 82 (152)
T ss_pred hHHHHHHHHHHHhcc-C--cccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh-cc--
Confidence 446678999955544 5 49999999999999999999999999999999988 5678999999998875432 22
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 253 KIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 253 ~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
.+-..+++++. ++.+|++++|.|...|++.+|....
T Consensus 83 -~q~t~edfveg-LrvFDkeg~G~i~~aeLRhvLttlG 118 (152)
T KOG0030|consen 83 -DQGTYEDFVEG-LRVFDKEGNGTIMGAELRHVLTTLG 118 (152)
T ss_pred -ccCcHHHHHHH-HHhhcccCCcceeHHHHHHHHHHHH
Confidence 22234565555 8999999999999999999998643
No 155
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.32 E-value=0.00054 Score=57.20 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 180 SELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 180 ~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
+++|+.+|.+ ++|.|+.+|+..++...+ ..++.++.+|+.+|.|++|.|+.+|+..++.
T Consensus 2 ~~~F~~~D~~---~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPD---GDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCC---CCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 3567754432 349999999999987763 3677899999999999999999999988875
No 156
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.27 E-value=0.0013 Score=59.69 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHh
Q 002711 179 ASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIAL 244 (889)
Q Consensus 179 ~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~ 244 (889)
..++|+.+| .+++|.|+++|+..++... +..++.++.+|..+|.|++|.|+.+||..++..
T Consensus 12 l~~~F~~~D---~d~~G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 12 YEQIFRSLD---KNQDGTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHhC---CCCCCeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 445555433 3345999999999888764 345678899999999999999999999988863
No 157
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.26 E-value=0.001 Score=62.42 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 002711 177 DFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEII 242 (889)
Q Consensus 177 ~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl 242 (889)
..+.-.|..+| .|++|.|+.+|+..+. ....+..+..+|+.+|.|+||.||.+|+...+
T Consensus 48 ~~l~w~F~~lD---~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLD---GNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHC---CCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 33455555433 2334888888877654 23346677889999999999999999998887
No 158
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.26 E-value=0.00089 Score=59.74 Aligned_cols=64 Identities=20% Similarity=0.406 Sum_probs=49.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH---hccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHh
Q 002711 180 SELFDALARRRGLTSSSITKSELRGFWEQ---ITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIAL 244 (889)
Q Consensus 180 ~~lf~~l~~~d~~~~G~Id~~EF~~~~~~---~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~ 244 (889)
-++|+.++.+++ .+|+|+.+||..++.. ++....++.+..+|+.+|.|+||.|+.+||..++..
T Consensus 13 i~~F~~y~~~~~-~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 13 VAIFHKYSGREG-DKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHccCC-CCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 455665554444 2489999999999863 455567888999999999999999999999888764
No 159
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.00088 Score=60.75 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhh----hcc---cchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 002711 213 SFDARLETFFDMVDKNLDGRITEEEVKEIIALSA----SAN---KLSKIQERVEEYAALIMEELDPHNLGYIELYNLEML 285 (889)
Q Consensus 213 ~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~----~~~---~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~ 285 (889)
++++----.|.|.|.|+||.|+--||...+.-.- ++. .+ ..+.+.+..++.+++.-|.|+||+|+|.||.+.
T Consensus 64 tpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl-~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 64 TPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPL-SSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCC-CCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4444444589999999999999999988886311 111 12 235667888999999999999999999999764
No 160
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.16 E-value=0.0019 Score=57.74 Aligned_cols=64 Identities=23% Similarity=0.332 Sum_probs=46.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHh-----ccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHh
Q 002711 180 SELFDALARRRGLTSSSITKSELRGFWEQI-----TDQSFDARLETFFDMVDKNLDGRITEEEVKEIIAL 244 (889)
Q Consensus 180 ~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~-----~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~ 244 (889)
..+|...++.+++ .++|+.+||..++... .....++.+..+++.+|.|+||.|+.+|+..++..
T Consensus 12 ~~~F~~y~~~dg~-~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 12 IAVFQKYAGKDGD-SYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHhccCCC-cCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4455543444442 2489999999988663 23445678889999999999999999999888863
No 161
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.03 E-value=0.00063 Score=45.50 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred HHHHhcCCCCCCcccHHHHHHHH
Q 002711 264 LIMEELDPHNLGYIELYNLEMLL 286 (889)
Q Consensus 264 ~i~~e~D~d~dG~Is~~EF~~~l 286 (889)
.+|+.+|.|+||.|+++||.+++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHC
Confidence 48999999999999999999875
No 162
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.97 E-value=0.0031 Score=78.16 Aligned_cols=132 Identities=17% Similarity=0.244 Sum_probs=95.4
Q ss_pred CcccHHHHHHHHHccc--CCCccchhhhcccc---cCC-------CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 002711 141 GTEGWGEVEKRFDELA--VDGMLPKSSFGQCI---GMN-------ESKDFASELFDALARRRGLTSSSITKSELRGFWEQ 208 (889)
Q Consensus 141 ~~~~~~~l~~~F~~ld--~dG~Ls~~ef~~~l---g~~-------~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~ 208 (889)
+++.+.+..-+|+.+| .+|+|+.++|..|| |.. ..++..+++++++|..+ +|+|+..||.++|..
T Consensus 2248 tEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r---~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2248 TEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNR---DGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCC---cCcccHHHHHHHHHh
Confidence 5677788999999999 89999999999998 221 12345677777555444 499999999999976
Q ss_pred h--ccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCC----CCCcccHHHH
Q 002711 209 I--TDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPH----NLGYIELYNL 282 (889)
Q Consensus 209 ~--~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d----~dG~Is~~EF 282 (889)
- .+-..++.+..||+..|. +.-+|+++|+..-|. .++++--+..|=.-+|+- -.+.++|.+|
T Consensus 2325 ~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~lt-----------reqaefc~s~m~~~~e~~~~~s~q~~l~y~df 2392 (2399)
T KOG0040|consen 2325 KETENILSSEEIEDAFRALDA-GKPYVTKEELYQNLT-----------REQAEFCMSKMKPYAETSSGRSDQVALDYKDF 2392 (2399)
T ss_pred cccccccchHHHHHHHHHhhc-CCccccHHHHHhcCC-----------HHHHHHHHHHhhhhcccccCCCccccccHHHH
Confidence 2 222345689999999999 888999999866542 133344444455556652 3478999999
Q ss_pred HHHHH
Q 002711 283 EMLLL 287 (889)
Q Consensus 283 ~~~l~ 287 (889)
..-+-
T Consensus 2393 v~sl~ 2397 (2399)
T KOG0040|consen 2393 VNSLF 2397 (2399)
T ss_pred HHHHh
Confidence 88653
No 163
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.92 E-value=0.0031 Score=56.30 Aligned_cols=65 Identities=20% Similarity=0.397 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hccCCh----HHHHHHHHHHhcCCCCceeeHHHHHHHHHh
Q 002711 179 ASELFDALARRRGLTSSSITKSELRGFWEQ-ITDQSF----DARLETFFDMVDKNLDGRITEEEVKEIIAL 244 (889)
Q Consensus 179 ~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~-~~~~~~----ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~ 244 (889)
+-++|...+..++ .+|.|+.+||..++.. +..... ++.+..+|+.+|.|+||.|+.+||..++..
T Consensus 10 ~~~~f~~y~~~~~-~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 10 IINVFHQYSVRKG-HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHhccCC-CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3455655554443 3589999999998863 333333 788999999999999999999999988864
No 164
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=96.91 E-value=0.015 Score=55.92 Aligned_cols=97 Identities=20% Similarity=0.250 Sum_probs=74.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHH
Q 002711 180 SELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVE 259 (889)
Q Consensus 180 ~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~ 259 (889)
.+-|.++|.++ +|.|+.+++...+..+++...++.|..+++ .+.|-|+..-|-.++...+... ..+
T Consensus 35 KEAF~~mDqnr---DG~IdkeDL~d~~aSlGk~~~d~elDaM~~----Ea~gPINft~FLTmfGekL~gt-------dpe 100 (171)
T KOG0031|consen 35 KEAFNLMDQNR---DGFIDKEDLRDMLASLGKIASDEELDAMMK----EAPGPINFTVFLTMFGEKLNGT-------DPE 100 (171)
T ss_pred HHHHHHHhccC---CCcccHHHHHHHHHHcCCCCCHHHHHHHHH----hCCCCeeHHHHHHHHHHHhcCC-------CHH
Confidence 34455444443 499999999999999998888999998886 5789999887776665322211 126
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 260 EYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 260 e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
+.+-..|+.+|.+++|.|.-+.++++|....
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g 131 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMG 131 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhc
Confidence 6777799999999999999999999998743
No 165
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.89 E-value=0.0039 Score=55.42 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhh-CCCCCCcccHHHHHHHHHH-hcc----CChHHHHHHHHHHhcCCCCceeeHHHHHHHHHh
Q 002711 178 FASELFDALARR-RGLTSSSITKSELRGFWEQ-ITD----QSFDARLETFFDMVDKNLDGRITEEEVKEIIAL 244 (889)
Q Consensus 178 ~~~~lf~~l~~~-d~~~~G~Id~~EF~~~~~~-~~~----~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~ 244 (889)
...++|..++.. ++ +|.|+.+||..++.. +.. ...++.+..+|..+|.|++|.|+.+||..++..
T Consensus 9 ~l~~~F~~~D~~~~~--~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 9 TIIDVFHKYSGKEGD--KDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHhhccCC--CCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 356678866653 34 499999999999865 322 124778999999999999999999999998863
No 166
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.77 E-value=0.0049 Score=56.67 Aligned_cols=92 Identities=21% Similarity=0.342 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCCCc
Q 002711 213 SFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAPSQ 292 (889)
Q Consensus 213 ~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~~ 292 (889)
...++-..+|+..|. ++|.|+-++.++++..+ +++ .+....|..-+|.|+||+++++||.-.|.-.-.-
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S----~L~------~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~ 75 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS----GLP------RDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRK 75 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT----TSS------HHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc----CCC------HHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHH
Confidence 345677889999985 68999999999998632 344 4556679999999999999999999887632100
Q ss_pred ccccccchhhhhhhhhhccCCCCCCC
Q 002711 293 SANLLTDSRVLSQMLSQRLVPTKDRN 318 (889)
Q Consensus 293 ~~~~~~~~~~l~~~~s~~l~~~~~~~ 318 (889)
..+....++..+...|.|+..+.
T Consensus 76 ---~~~~~~~lP~~LP~~L~p~s~~~ 98 (104)
T PF12763_consen 76 ---LNGNGKPLPSSLPPSLIPPSKRP 98 (104)
T ss_dssp ---HHHTTS---SSSSGGGSSSCG--
T ss_pred ---hcCCCCCCchhcCHHHCCCCccc
Confidence 01223456667777777765543
No 167
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.68 E-value=0.003 Score=59.10 Aligned_cols=73 Identities=21% Similarity=0.122 Sum_probs=47.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHH
Q 002711 202 LRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYN 281 (889)
Q Consensus 202 F~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~E 281 (889)
............-...+...|..+|.|+||.++..||+.+....... +.-+...++..|.|+||.||+.|
T Consensus 40 ~~~~~~~~~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~----------e~C~~~F~~~CD~n~d~~Is~~E 109 (113)
T PF10591_consen 40 LLKRDESSSYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPP----------EHCARPFFRSCDVNKDGKISLDE 109 (113)
T ss_dssp HHHHHHHHTGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTT----------GGGHHHHHHHH-TT-SSSEEHHH
T ss_pred ccccccccchhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhh----------HHHHHHHHHHcCCCCCCCCCHHH
Confidence 33333333444556778999999999999999999999876522111 12234589999999999999999
Q ss_pred HHH
Q 002711 282 LEM 284 (889)
Q Consensus 282 F~~ 284 (889)
+..
T Consensus 110 W~~ 112 (113)
T PF10591_consen 110 WCN 112 (113)
T ss_dssp HHH
T ss_pred Hcc
Confidence 864
No 168
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.66 E-value=0.0062 Score=47.78 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 196 SITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 196 ~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
+++|+|...++..+.-...++.+..+|+.+|++++|++..+|+.++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 368899999998888888899999999999999999999999999886
No 169
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.50 E-value=0.003 Score=64.59 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhC
Q 002711 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQA 289 (889)
Q Consensus 215 ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 289 (889)
.+++..+|...|.|.||+||..|+++.++..... .+.+ +.+..+.-|+.+|+|+||.|+++||+--+...
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaE-Hfqe----ameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAE-HFQE----AMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHH-HHHH----HHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 4679999999999999999999999988632211 1211 22334457888999999999999998755543
No 170
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.46 E-value=0.0023 Score=65.48 Aligned_cols=131 Identities=11% Similarity=0.008 Sum_probs=84.8
Q ss_pred HHHHHHHHccc--CCCccchhhhcccccCCCC------HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHH-
Q 002711 146 GEVEKRFDELA--VDGMLPKSSFGQCIGMNES------KDFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDA- 216 (889)
Q Consensus 146 ~~l~~~F~~ld--~dG~Ls~~ef~~~lg~~~~------~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee- 216 (889)
+.+..+|.+.| .||.|+..|+++-+-.+.. .+..+-.|++ .|.+++|.|+++||.--.......+..+
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFra---VDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRA---VDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheee---eCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 46788999999 7999999999887722211 1112223332 3455569999999975443332211111
Q ss_pred -------------HHHHHHHHhcCCCCceeeH---------HHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCC
Q 002711 217 -------------RLETFFDMVDKNLDGRITE---------EEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNL 274 (889)
Q Consensus 217 -------------~l~~aF~~~Dkd~dG~It~---------eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~d 274 (889)
.=.+.|.--|+|.+|..+. +|+-.++--..+ ..-+...++.|+..+|+|||
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhS-------rgmLrfmVkeivrdlDqdgD 250 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHS-------RGMLRFMVKEIVRDLDQDGD 250 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhh-------hhhHHHHHHHHHHHhccCCC
Confidence 1234566667777777665 887777632111 12246678889999999999
Q ss_pred CcccHHHHHHHH
Q 002711 275 GYIELYNLEMLL 286 (889)
Q Consensus 275 G~Is~~EF~~~l 286 (889)
..++..||+.+.
T Consensus 251 kqlSvpeFislp 262 (362)
T KOG4251|consen 251 KQLSVPEFISLP 262 (362)
T ss_pred eeecchhhhcCC
Confidence 999999998754
No 171
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.37 E-value=0.0096 Score=46.75 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=37.4
Q ss_pred eeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 002711 232 RITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLL 287 (889)
Q Consensus 232 ~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~ 287 (889)
+++.+|++.+++.... .++ ++|+..+|+++|.+++|.++.+||+.+..
T Consensus 1 kmsf~Evk~lLk~~NI--~~~------~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNI--EMD------DEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT------------HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc--CcC------HHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 4788999999984321 222 78999999999999999999999998765
No 172
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.19 E-value=0.0089 Score=53.24 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 214 FDARLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 214 ~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
..+-+..+|+..|.|+||.|+.+|+..++.
T Consensus 46 d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 46 DPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 344555555555666666666555555554
No 173
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.15 E-value=0.0057 Score=43.09 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.7
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 263 ALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 263 ~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
..+|+.+|.|+||+|+.+||..+|.+
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 45899999999999999999999974
No 174
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.11 E-value=0.011 Score=54.42 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=26.5
Q ss_pred CcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHh
Q 002711 195 SSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIAL 244 (889)
Q Consensus 195 G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~ 244 (889)
|.|+-++-..++... +.+.+.|..++++.|.|+||+++.+||.-+|.+
T Consensus 24 g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 24 GKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp TEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 555555555444322 334456666666666666666666666655553
No 175
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=96.07 E-value=1.6 Score=46.73 Aligned_cols=125 Identities=15% Similarity=0.144 Sum_probs=83.7
Q ss_pred ccccEEEEEEEEecCCEEEEEEecCCCCc----cCCccEEEEEEcCCCC--------------------Ccccceeeeec
Q 002711 574 GYKSVRILKVAVYPGNVLALQMSKPQGFK----YTSGQYIFVNCAAVSQ--------------------FQWHPFSITSA 629 (889)
Q Consensus 574 ~~~~~~i~~v~~~~~~v~~l~~~~p~~~~----~~pGQyv~l~~p~is~--------------------~e~HPFTIaSa 629 (889)
..+.++|+.+..++.+.++++|..|.... ...+||+.|-+|..+. .-.++|||.+.
T Consensus 16 ~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~ 95 (265)
T COG2375 16 RLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAV 95 (265)
T ss_pred cceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeee
Confidence 34578889999999999999999876433 3444599999986421 12677888654
Q ss_pred -CCCCceEEEEEecCcchHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCCCCCCCCCCEEEEEEc
Q 002711 630 -PGDDYLSIHIRTLGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGL 708 (889)
Q Consensus 630 -P~~~~l~l~Ir~~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~~~~~~~~~~vllVag 708 (889)
++...+.+=+=..| +.|..|.|-+ ..++|+ ++.|-||=|... ....++..+|+|=
T Consensus 96 d~~~~e~~vDfVlH~----------------~~gpas~WA~-~a~~GD------~l~i~GP~g~~~-p~~~~~~~lLigD 151 (265)
T COG2375 96 DAAAGELDVDFVLHG----------------EGGPASRWAR-TAQPGD------TLTIMGPRGSLV-PPEAADWYLLIGD 151 (265)
T ss_pred cccccEEEEEEEEcC----------------CCCcchhhHh-hCCCCC------EEEEeCCCCCCC-CCCCcceEEEecc
Confidence 33343333222221 1122222221 234787 899999999954 3456889999998
Q ss_pred CcchhhHHHHHHHH
Q 002711 709 GIGATPLISIIKDV 722 (889)
Q Consensus 709 GiGITP~lsil~~l 722 (889)
=+++..+..||..+
T Consensus 152 etAlPAIa~iLE~l 165 (265)
T COG2375 152 ETALPAIARILETL 165 (265)
T ss_pred ccchHHHHHHHHhC
Confidence 99999999988876
No 176
>PF14658 EF-hand_9: EF-hand domain
Probab=95.88 E-value=0.023 Score=47.35 Aligned_cols=59 Identities=17% Similarity=0.337 Sum_probs=50.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhcc-CChHHHHHHHHHHhcCCCC-ceeeHHHHHHHHH
Q 002711 182 LFDALARRRGLTSSSITKSELRGFWEQITD-QSFDARLETFFDMVDKNLD-GRITEEEVKEIIA 243 (889)
Q Consensus 182 lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~-~~~ee~l~~aF~~~Dkd~d-G~It~eEl~~vl~ 243 (889)
.|+++|..+. |.|.-.+++.++..+.. ...|++|+.+-+.+|.++. |.|+.++|..+|+
T Consensus 3 ~F~~fD~~~t---G~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKT---GRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCC---ceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 5775555544 99999999999999877 7778899999999999998 9999999999885
No 177
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.88 E-value=0.011 Score=66.98 Aligned_cols=57 Identities=33% Similarity=0.477 Sum_probs=44.6
Q ss_pred cCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 171 GMNESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 171 g~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
|....+..+..+|..+ |.++ +|.|+.+||.. +..+|+.+|.|+||.|+.+||+++++
T Consensus 328 ~~~~~~~~l~~aF~~~-D~dg--dG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 328 GGEAFTHAAQEIFRLY-DLDG--DGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred ccChhhHHHHHHHHHh-CCCC--CCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 4444556677888853 3333 49999999952 46789999999999999999999986
No 178
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.78 E-value=0.024 Score=64.26 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhC
Q 002711 217 RLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQA 289 (889)
Q Consensus 217 ~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 289 (889)
.++..|...| |++|+||..|+..+++...... .-..+++++.++.+.++|.+|.|+||||..++..-
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~-----g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL-----GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc-----cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 5788899999 9999999999999997422211 22346778889999999999999999999977654
No 179
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=95.65 E-value=0.025 Score=62.75 Aligned_cols=65 Identities=23% Similarity=0.361 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc----cCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHh
Q 002711 177 DFASELFDALARRRGLTSSSITKSELRGFWEQIT----DQSFDARLETFFDMVDKNLDGRITEEEVKEIIAL 244 (889)
Q Consensus 177 ~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~----~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~ 244 (889)
...+.+|.++|.++ +|.|+.+||.++|..++ ....++.+-..=++.|.|+||.|+.+||-+++.+
T Consensus 547 s~LetiF~~iD~D~---SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 547 SSLETIFNIIDADN---SGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhHHHHHHHhccCC---CCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 34677888766544 49999999999997753 3446778888889999999999999999998874
No 180
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.16 E-value=0.031 Score=69.83 Aligned_cols=73 Identities=21% Similarity=0.404 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHH-HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCCCc
Q 002711 218 LETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQE-RVEEYAALIMEELDPHNLGYIELYNLEMLLLQAPSQ 292 (889)
Q Consensus 218 l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~-~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~~ 292 (889)
...+|+.||++.+|.++.++|+.+++... ..++..++ +.+-..+.+|.-+||+.+|+|+..||...|-.+.+.
T Consensus 2255 Fs~~fkhFDkek~G~Ldhq~F~sCLrslg--Y~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETe 2328 (2399)
T KOG0040|consen 2255 FSMMFKHFDKEKNGRLDHQHFKSCLRSLG--YDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETE 2328 (2399)
T ss_pred HHHHHHHhchhhccCCcHHHHHHHHHhcC--CCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccc
Confidence 35679999999999999999999998532 22322211 123356679999999999999999999999887654
No 181
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.06 E-value=0.24 Score=60.42 Aligned_cols=80 Identities=15% Similarity=0.264 Sum_probs=54.9
Q ss_pred CCCccchhhhcccccCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh---c-----cCChHHHHHHHHHHhcCC
Q 002711 157 VDGMLPKSSFGQCIGMNESKDFASELFDALARRRGLTSSSITKSELRGFWEQI---T-----DQSFDARLETFFDMVDKN 228 (889)
Q Consensus 157 ~dG~Ls~~ef~~~lg~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~---~-----~~~~ee~l~~aF~~~Dkd 228 (889)
++| ++.+||. ... ...+...+-+|+..|. ++|.++.+|+.+..... . ....++.....|+..|.+
T Consensus 1 ~~~-~~~~~~~-~~~-~~~d~~l~~~f~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 1 GEG-ISFQELK-ITD-CSYDDKLQTFFDMYDK----GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CCC-cchhhhc-ccC-CChhHHHHHHHHHHhh----hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 357 8888888 222 2234556667774443 34899999988876542 1 122345567789999999
Q ss_pred CCceeeHHHHHHHHH
Q 002711 229 LDGRITEEEVKEIIA 243 (889)
Q Consensus 229 ~dG~It~eEl~~vl~ 243 (889)
+.|++..+++.-++.
T Consensus 74 ~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 74 HKGYITNEDLEILLL 88 (646)
T ss_pred ccceeeecchhHHHH
Confidence 999999999988875
No 182
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.95 E-value=0.038 Score=58.62 Aligned_cols=90 Identities=20% Similarity=0.330 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHhccCChHH-HHHHHHHHhcCCCCceeeHHHHHHHHHhhh-----hccc---chhhHHHHHHHHHHHHHh
Q 002711 198 TKSELRGFWEQITDQSFDA-RLETFFDMVDKNLDGRITEEEVKEIIALSA-----SANK---LSKIQERVEEYAALIMEE 268 (889)
Q Consensus 198 d~~EF~~~~~~~~~~~~ee-~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~-----~~~~---l~~~~~~~~e~~~~i~~e 268 (889)
+.+++.++|...-...++. .-+.+|.+.|.|+||+++..||..++.... ..|. +.+-+++.-..-+.+|++
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 4677888887643333322 357899999999999999999999886422 1121 111122222335678999
Q ss_pred cCCCCCCcccHHHHHHHHH
Q 002711 269 LDPHNLGYIELYNLEMLLL 287 (889)
Q Consensus 269 ~D~d~dG~Is~~EF~~~l~ 287 (889)
+|.|.|--||.+||.+--.
T Consensus 305 vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred cccchhhhhhHHHHHhhhh
Confidence 9999999999999987554
No 183
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.47 E-value=0.045 Score=36.28 Aligned_cols=26 Identities=38% Similarity=0.649 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 218 LETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 218 l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
++.+|+.+|.|++|.|+.+||..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 57799999999999999999998875
No 184
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.38 E-value=0.051 Score=36.00 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=23.3
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 263 ALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 263 ~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
..+|+.+|.|++|.|+++||..++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 44899999999999999999998864
No 185
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=94.22 E-value=0.061 Score=51.23 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=63.1
Q ss_pred HHHHHHHcccCCCccchhhhccccc----CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccC-ChHHH----
Q 002711 147 EVEKRFDELAVDGMLPKSSFGQCIG----MNESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQ-SFDAR---- 217 (889)
Q Consensus 147 ~l~~~F~~ld~dG~Ls~~ef~~~lg----~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~-~~ee~---- 217 (889)
++-+.|.+ |++|.++.++|...+. |.+....+.--|.+ -+. ++++.|-.+++...+..+.+. ..+++
T Consensus 75 ri~e~FSe-DG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkI-YDf--d~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i 150 (189)
T KOG0038|consen 75 RICEVFSE-DGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKI-YDF--DGDEFIGHDDLEKTLTSLTRDELSDEEVELI 150 (189)
T ss_pred HHHHHhcc-CCCCcccHHHHHHHHHHHHhhChHHhhhhheeEE-eec--CCCCcccHHHHHHHHHHHhhccCCHHHHHHH
Confidence 44566653 4899999999988873 33332223333332 223 335899999998888775443 22333
Q ss_pred HHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 218 LETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 218 l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
+....+.-|.||||+|+..|+..++.
T Consensus 151 ~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 151 CEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 46667888999999999999999985
No 186
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=93.83 E-value=0.14 Score=57.82 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=66.4
Q ss_pred HHHHHHccc--CCCccchhhhcccccCC---------CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHH
Q 002711 148 VEKRFDELA--VDGMLPKSSFGQCIGMN---------ESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDA 216 (889)
Q Consensus 148 l~~~F~~ld--~dG~Ls~~ef~~~lg~~---------~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee 216 (889)
.+..|+.+| ++|.++.+++++.++.. -+.+++...|.. ... -.++|.||.+++-.+ .+|
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~---~~~---r~~ny~~f~Q~lh~~----~~E 179 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGD---IRK---RHLNYAEFTQFLHEF----QLE 179 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhh---HHH---HhccHHHHHHHHHHH----HHH
Confidence 456777777 88999999999887432 234667776662 222 468899999888654 367
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 217 RLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 217 ~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
..+++|+..|+.++|+||.=+++.+|-
T Consensus 180 ~~~qafr~~d~~~ng~is~Ldfq~imv 206 (694)
T KOG0751|consen 180 HAEQAFREKDKAKNGFISVLDFQDIMV 206 (694)
T ss_pred HHHHHHHHhcccCCCeeeeechHhhhh
Confidence 789999999999999999999999885
No 187
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=92.95 E-value=0.53 Score=47.51 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=57.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHH
Q 002711 180 SELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVE 259 (889)
Q Consensus 180 ~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~ 259 (889)
..+|..+|.+ .||+||+.|+..+|..++-....--++.+.+.+|-|.||+||.-|+--+....+.. .+.. +
T Consensus 102 ~~~Fk~yDe~---rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaag-EL~~-----d 172 (244)
T KOG0041|consen 102 ESMFKQYDED---RDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAG-ELQE-----D 172 (244)
T ss_pred HHHHHHhccc---ccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcc-cccc-----c
Confidence 4455533333 34888888888888777665555667778888888888888888877776643321 2222 1
Q ss_pred HHHHH--HHHhcCCCCCCcccHHHHH
Q 002711 260 EYAAL--IMEELDPHNLGYIELYNLE 283 (889)
Q Consensus 260 e~~~~--i~~e~D~d~dG~Is~~EF~ 283 (889)
..... =..++|....|.---..|-
T Consensus 173 s~~~~LAr~~eVDVskeGV~GAknFF 198 (244)
T KOG0041|consen 173 SGLLRLARLSEVDVSKEGVSGAKNFF 198 (244)
T ss_pred hHHHHHHHhcccchhhhhhhhHHHHH
Confidence 11111 1456777766665555543
No 188
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.23 E-value=1.1 Score=53.99 Aligned_cols=151 Identities=14% Similarity=0.213 Sum_probs=102.1
Q ss_pred HHHHhcccccccccc-----CcccHHHHHHHHHccc--CCCccchhhhccccc---CCCCHHHHHHHHHHHHhhCCCCCC
Q 002711 126 AARALKGLKFITKNV-----GTEGWGEVEKRFDELA--VDGMLPKSSFGQCIG---MNESKDFASELFDALARRRGLTSS 195 (889)
Q Consensus 126 ~~~al~~L~~i~~~~-----~~~~~~~l~~~F~~ld--~dG~Ls~~ef~~~lg---~~~~~~~~~~lf~~l~~~d~~~~G 195 (889)
++.=.+||+.+.... ....-.++...|+..| ++|.++.++...++. +......+..+|...+ ..+++
T Consensus 111 a~~wV~gl~~l~s~~~~~~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~---~~~~~ 187 (746)
T KOG0169|consen 111 ANIWVSGLRKLISRSKSMRQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESD---NSQTG 187 (746)
T ss_pred HHHHhhhHHHHHhccchhhhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHH---hhccc
Confidence 344455555554321 2233357999999999 899999999888773 2234556777777542 22359
Q ss_pred cccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCC---
Q 002711 196 SITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPH--- 272 (889)
Q Consensus 196 ~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d--- 272 (889)
.+..++|..+-....... .+..+|..+-.+ .+.++.++|.+++.......... .+.++.|++++..-
T Consensus 188 k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~------~~~ae~ii~~~e~~k~~ 257 (746)
T KOG0169|consen 188 KLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGAT------LDEAEEIIERYEPSKEF 257 (746)
T ss_pred eehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhccccccc------HHHHHHHHHHhhhhhhc
Confidence 999999999877665433 677788877555 89999999999998543332222 34455566665432
Q ss_pred -CCCcccHHHHHHHHHhC
Q 002711 273 -NLGYIELYNLEMLLLQA 289 (889)
Q Consensus 273 -~dG~Is~~EF~~~l~~~ 289 (889)
..+.++++.|...|...
T Consensus 258 ~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 258 RRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred cccceecHHHHHHHhcCc
Confidence 44679999999988754
No 189
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=0.81 Score=54.45 Aligned_cols=134 Identities=13% Similarity=0.179 Sum_probs=95.7
Q ss_pred CcccHHHHHHHHHccc-CCCccchhhhcccc-cCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc--------
Q 002711 141 GTEGWGEVEKRFDELA-VDGMLPKSSFGQCI-GMNESKDFASELFDALARRRGLTSSSITKSELRGFWEQIT-------- 210 (889)
Q Consensus 141 ~~~~~~~l~~~F~~ld-~dG~Ls~~ef~~~l-g~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~-------- 210 (889)
+.+|-..-.+.|..|. +.|.|+-++-+.++ .......-..+|.. |.|.|. ||.+|-.||.-+|..+.
T Consensus 11 T~~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~LP~~VLaqIWA-LsDldk--DGrmdi~EfSIAmkLi~lkLqG~~l 87 (1118)
T KOG1029|consen 11 TDEERQKHDAQFGQLKPGQGFITGDQARNFFLQSGLPTPVLAQIWA-LSDLDK--DGRMDIREFSIAMKLIKLKLQGIQL 87 (1118)
T ss_pred chHHHHHHHHHHhccCCCCCccchHhhhhhHHhcCCChHHHHHHHH-hhhcCc--cccchHHHHHHHHHHHHHHhcCCcC
Confidence 4456566777888888 88999988877766 11122345677777 676666 49999999988775431
Q ss_pred ------------------------------------------------------------------cC------------
Q 002711 211 ------------------------------------------------------------------DQ------------ 212 (889)
Q Consensus 211 ------------------------------------------------------------------~~------------ 212 (889)
.+
T Consensus 88 P~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~ 167 (1118)
T KOG1029|consen 88 PPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPH 167 (1118)
T ss_pred CCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 00
Q ss_pred ------------------------ChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHh
Q 002711 213 ------------------------SFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEE 268 (889)
Q Consensus 213 ------------------------~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e 268 (889)
...-+.++.|+..|+..+|++|-..-+.+|..+ +|+ ....+.|-.-
T Consensus 168 ~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS----~Lp------q~~LA~IW~L 237 (1118)
T KOG1029|consen 168 DSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS----GLP------QNQLAHIWTL 237 (1118)
T ss_pred CcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhc----CCc------hhhHhhheee
Confidence 001256789999999999999999988888532 233 3345568888
Q ss_pred cCCCCCCcccHHHHHHHHH
Q 002711 269 LDPHNLGYIELYNLEMLLL 287 (889)
Q Consensus 269 ~D~d~dG~Is~~EF~~~l~ 287 (889)
.|.|+||+++-|||.-.|.
T Consensus 238 sDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 238 SDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred eccCCCCcccHHHHHHHHH
Confidence 9999999999999986553
No 190
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=92.09 E-value=0.22 Score=56.85 Aligned_cols=76 Identities=12% Similarity=0.210 Sum_probs=54.2
Q ss_pred cccccccCcccHHHHHHHHHccc-CCCccchhhhccccc---CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 002711 134 KFITKNVGTEGWGEVEKRFDELA-VDGMLPKSSFGQCIG---MNESKDFASELFDALARRRGLTSSSITKSELRGFWEQI 209 (889)
Q Consensus 134 ~~i~~~~~~~~~~~l~~~F~~ld-~dG~Ls~~ef~~~lg---~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~ 209 (889)
.....+.+.+|+.++++.|.++| ++|+++..|+..++. ......-.+++-+++...+.+.+|.|+|+||+..+..+
T Consensus 7 ~~~~~~~tq~El~~l~~kF~~~d~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 7 PWLQSQLTQEELRELKEKFNKLDDQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred hhhcccccHHHHHHHHHHHHhhcCCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 33445678899999999999999 999999999988873 21111122344444555556667999999999865443
No 191
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=91.17 E-value=0.35 Score=54.67 Aligned_cols=129 Identities=12% Similarity=0.190 Sum_probs=77.9
Q ss_pred HHHHHHHccc--CCCccchhhhcccc---cCC--C--------CH----HHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 002711 147 EVEKRFDELA--VDGMLPKSSFGQCI---GMN--E--------SK----DFASELFDALARRRGLTSSSITKSELRGFWE 207 (889)
Q Consensus 147 ~l~~~F~~ld--~dG~Ls~~ef~~~l---g~~--~--------~~----~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~ 207 (889)
.+++.|--++ ..|.|+..|+..+. .+. . .. +....++..+-.-|.|.+|.|+.+++..+-.
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 5677888787 89999999886653 000 0 00 1112222222333455568888888776654
Q ss_pred HhccCChHHHHHHHHH----HhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHH
Q 002711 208 QITDQSFDARLETFFD----MVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLE 283 (889)
Q Consensus 208 ~~~~~~~ee~l~~aF~----~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~ 283 (889)
... .+--+..+|. .+=.-.+|+++.+++..++-.. .++-+ ..-++-.|+-+|.|+||.++.+|..
T Consensus 306 ~tl---t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~--e~k~t------~~SleYwFrclDld~~G~Lt~~el~ 374 (493)
T KOG2562|consen 306 HTL---TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE--EDKDT------PASLEYWFRCLDLDGDGILTLNELR 374 (493)
T ss_pred cch---hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh--ccCCC------ccchhhheeeeeccCCCcccHHHHH
Confidence 321 2334667777 4445567889888888877421 11111 2234557999999999999988766
Q ss_pred HHH
Q 002711 284 MLL 286 (889)
Q Consensus 284 ~~l 286 (889)
-+-
T Consensus 375 ~fy 377 (493)
T KOG2562|consen 375 YFY 377 (493)
T ss_pred HHH
Confidence 443
No 192
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=90.93 E-value=0.44 Score=41.72 Aligned_cols=67 Identities=19% Similarity=0.359 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCC----CCCcccHHHHHHHHHhCC
Q 002711 217 RLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPH----NLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 217 ~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d----~dG~Is~~EF~~~l~~~p 290 (889)
.++.+|+.|-. +.+.||.++|...|...-....++ ++.++.+|+.+.++ ..+.+++++|...|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~------~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLT------DEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSS------HHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCc------HHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36778888854 788999999999996433222221 44455567766554 479999999999997654
No 193
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=90.36 E-value=1.4 Score=54.28 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=79.3
Q ss_pred cccCcccHHHHHHHHHccc--CCCccchhhhcccc---cCCC--CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-h
Q 002711 138 KNVGTEGWGEVEKRFDELA--VDGMLPKSSFGQCI---GMNE--SKDFASELFDALARRRGLTSSSITKSELRGFWEQ-I 209 (889)
Q Consensus 138 ~~~~~~~~~~l~~~F~~ld--~dG~Ls~~ef~~~l---g~~~--~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~-~ 209 (889)
+..++....+++..|+..+ ..|.++.++|..|+ |.+. .+....+.|.++...|.+..|.+++.||.+.+.. .
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 3344455678888888888 56779999999998 3332 2445788888888777766689999999999866 5
Q ss_pred ccCChHHHHHHHHHHhcCCCCceeeHHHHHH
Q 002711 210 TDQSFDARLETFFDMVDKNLDGRITEEEVKE 240 (889)
Q Consensus 210 ~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~ 240 (889)
...+.++++..+|+.+-++.. +|..+||..
T Consensus 819 e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 819 EDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 566788899999999988877 888888876
No 194
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=90.35 E-value=0.5 Score=55.58 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=73.4
Q ss_pred ccccccc--cCcccHHHHHHHHHccc-----CCC--c---------cchhhhcccc-cC---CCCHHHHHHHHHHHHhhC
Q 002711 133 LKFITKN--VGTEGWGEVEKRFDELA-----VDG--M---------LPKSSFGQCI-GM---NESKDFASELFDALARRR 190 (889)
Q Consensus 133 L~~i~~~--~~~~~~~~l~~~F~~ld-----~dG--~---------Ls~~ef~~~l-g~---~~~~~~~~~lf~~l~~~d 190 (889)
||-+.++ ++.+++..|..+|++-- +-| . ++.+.|...+ +. ..+..+.+++|..+|+..
T Consensus 489 lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~ 568 (671)
T KOG4347|consen 489 LRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSM 568 (671)
T ss_pred HHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCC
Confidence 4555443 57888899999997532 111 1 2222232222 11 124578899999655444
Q ss_pred CCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHH
Q 002711 191 GLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEV 238 (889)
Q Consensus 191 ~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl 238 (889)
. |.|+|.+|+..+..+.....-+++..+|+++|.+++ ..+.||+
T Consensus 569 ~---g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 569 T---GLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred c---ceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4 999999999999999988999999999999999999 9999998
No 195
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=89.66 E-value=0.17 Score=47.32 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHccc--CCCccchhhhccccc
Q 002711 143 EGWGEVEKRFDELA--VDGMLPKSSFGQCIG 171 (889)
Q Consensus 143 ~~~~~l~~~F~~ld--~dG~Ls~~ef~~~lg 171 (889)
.....+.-.|..|| +||.|+..|+.....
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~ 81 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRR 81 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGS
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHH
Confidence 34456777888888 788888888876654
No 196
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=89.42 E-value=2.2 Score=40.11 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=50.2
Q ss_pred EEEEEEEecCCEEEEEEecCC--CCc-cCCccEEEEEEcCCCCC---------------------cccceeeeec-CCCC
Q 002711 579 RILKVAVYPGNVLALQMSKPQ--GFK-YTSGQYIFVNCAAVSQF---------------------QWHPFSITSA-PGDD 633 (889)
Q Consensus 579 ~i~~v~~~~~~v~~l~~~~p~--~~~-~~pGQyv~l~~p~is~~---------------------e~HPFTIaSa-P~~~ 633 (889)
+|+.++.++.++.+|++..+. .+. ..||||+.|.+|....- ..+.|||-+. |+.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 467889999999999999865 333 47999999999864321 3567888775 5667
Q ss_pred ceEEEEEecCc--chHHHHHHHhhccCCCCCCCccccccccccCCCCCCccEEEEeCCCCCC
Q 002711 634 YLSIHIRTLGD--WTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAP 693 (889)
Q Consensus 634 ~l~l~Ir~~G~--wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~vdGPYG~~ 693 (889)
.+.|-+-..|+ -..+=...+ ++|+ .|.|-||-|++
T Consensus 81 ~l~iDfv~Hg~~Gpas~WA~~A-------------------~pGd------~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDEGPASRWARSA-------------------RPGD------RVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS--HHHHHHHH---------------------TT-------EEEEEEEE---
T ss_pred EEEEEEEECCCCCchHHHHhhC-------------------CCCC------EEEEeCCCCCC
Confidence 77776666654 111111111 2687 89999998763
No 197
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=88.23 E-value=0.37 Score=51.93 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCCCc
Q 002711 217 RLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAPSQ 292 (889)
Q Consensus 217 ~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~~ 292 (889)
-+...|..+|+|.++.|.+.|.+.+=.......++ ..-...+++-.|.|+|-.||++|+..-|...+..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~-------rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~ 402 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKP-------RKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKER 402 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccH-------HHHhhhcchhcccCCCceecHHHHhhhhcccccc
Confidence 46778999999999999999988766543332221 3345569999999999999999999999877654
No 198
>PLN02952 phosphoinositide phospholipase C
Probab=85.13 E-value=4.1 Score=48.88 Aligned_cols=91 Identities=9% Similarity=0.108 Sum_probs=60.2
Q ss_pred CcccHHHHHHHHHHhc--cCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcC--
Q 002711 195 SSITKSELRGFWEQIT--DQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELD-- 270 (889)
Q Consensus 195 G~Id~~EF~~~~~~~~--~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D-- 270 (889)
|.++|+||..+...+. ...+..++..+|+.|-.++ +.+|.+||..+|.........+ .+.+++.++.+++...
T Consensus 15 g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~--~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCT--LAEAQRIVEEVINRRHHV 91 (599)
T ss_pred CCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCC--HHHHHHHHHHHHhhcccc
Confidence 8999999999887764 2346788999999995544 6899999999997433222111 2223333333333222
Q ss_pred -CCCCCcccHHHHHHHHHh
Q 002711 271 -PHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 271 -~d~dG~Is~~EF~~~l~~ 288 (889)
..+.+.+++++|...|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 123456999999998875
No 199
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=83.97 E-value=7 Score=34.96 Aligned_cols=71 Identities=8% Similarity=0.133 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhh-----cccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhC
Q 002711 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSAS-----ANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQA 289 (889)
Q Consensus 215 ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~-----~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 289 (889)
+||++.+|+.+ .|.+|.++..-|..++..... ....+... .+..+...|+..- ..-.|+.++|...|...
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~--~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGY--IEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT----HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccC--cHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 58999999999 789999999999888863110 01111111 4666777888873 45679999999999887
Q ss_pred C
Q 002711 290 P 290 (889)
Q Consensus 290 p 290 (889)
|
T Consensus 77 P 77 (90)
T PF09069_consen 77 P 77 (90)
T ss_dssp -
T ss_pred C
Confidence 7
No 200
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.44 E-value=1.3 Score=40.66 Aligned_cols=64 Identities=17% Similarity=0.066 Sum_probs=40.9
Q ss_pred cCcccHHHHHHHHHccc--CCCccchhhhcccc---------cC----CCCHHHHHHHHHHH-HhhCCCCCCcccHHHHH
Q 002711 140 VGTEGWGEVEKRFDELA--VDGMLPKSSFGQCI---------GM----NESKDFASELFDAL-ARRRGLTSSSITKSELR 203 (889)
Q Consensus 140 ~~~~~~~~l~~~F~~ld--~dG~Ls~~ef~~~l---------g~----~~~~~~~~~lf~~l-~~~d~~~~G~Id~~EF~ 203 (889)
++.++.. ..-|+.-| +||.|+=-|+.+++ |- ..++.+.++|.+.+ +|+|-|++|.|||.||+
T Consensus 63 mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEfl 140 (144)
T KOG4065|consen 63 MTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFL 140 (144)
T ss_pred CCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHH
Confidence 4444432 34566656 88999887877776 11 13456667777754 44445677999999998
Q ss_pred HH
Q 002711 204 GF 205 (889)
Q Consensus 204 ~~ 205 (889)
..
T Consensus 141 K~ 142 (144)
T KOG4065|consen 141 KR 142 (144)
T ss_pred hh
Confidence 64
No 201
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=80.65 E-value=5.4 Score=46.96 Aligned_cols=149 Identities=11% Similarity=0.112 Sum_probs=88.8
Q ss_pred CcccHHHHHHHHHccc--CCCccchhhh----cccccCCCCHHHHHHHHHHHHhhCCC--CCCcccHHHHHHHHHHhccC
Q 002711 141 GTEGWGEVEKRFDELA--VDGMLPKSSF----GQCIGMNESKDFASELFDALARRRGL--TSSSITKSELRGFWEQITDQ 212 (889)
Q Consensus 141 ~~~~~~~l~~~F~~ld--~dG~Ls~~ef----~~~lg~~~~~~~~~~lf~~l~~~d~~--~~G~Id~~EF~~~~~~~~~~ 212 (889)
...-...+.++|+.-| .||.++-.|+ +.|++..-...+.+.+-..+.+.-.+ ..+.++..-|+.....+.+.
T Consensus 190 kp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfier 269 (625)
T KOG1707|consen 190 KPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIER 269 (625)
T ss_pred cHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHh
Confidence 3344568889999888 8999998776 44677766666666666655544322 22556666677655443332
Q ss_pred ChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCCC
Q 002711 213 SFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAPS 291 (889)
Q Consensus 213 ~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~ 291 (889)
...|-.-.+-+.|--+.+=.++.+=+..-++. .....-++....-+....+|..+|.|+||.++=+|+..+....|.
T Consensus 270 gr~EttW~iLR~fgY~DsleL~~~~l~p~~~~--~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 270 GRHETTWTILRKFGYTDSLELTDEYLPPRLKV--PPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred ccccchhhhhhhcCCcchhhhhhhhcCccccC--CCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 22333333334443343434443322222211 001111222334556777999999999999999999999999883
No 202
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=79.79 E-value=2.1 Score=46.75 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhC
Q 002711 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQA 289 (889)
Q Consensus 215 ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 289 (889)
++.+-.+|..+|.|.||.++..||+.+-. ..| |.=++..|...|...||.|+-+|+..-+.+.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l---dkn---------E~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL---DKN---------EACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc---cCc---------hhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 56789999999999999999999998752 112 4445669999999999999999999988653
No 203
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=79.43 E-value=1.9 Score=46.76 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=62.0
Q ss_pred CCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHH-hhhhcccchhhHHHHHHHHHHHHHhcCCC
Q 002711 194 SSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIA-LSASANKLSKIQERVEEYAALIMEELDPH 272 (889)
Q Consensus 194 ~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~-~~~~~~~l~~~~~~~~e~~~~i~~e~D~d 272 (889)
++.|--.||...+.. ...++++..|.+||.+++|.++.-|--..+. ++...+. .+.++..|+.+|.+
T Consensus 241 g~~igi~efa~~l~v----pvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t--------~~iiq~afk~f~v~ 308 (412)
T KOG4666|consen 241 GPDIGIVEFAVNLRV----PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVT--------PVIIQYAFKRFSVA 308 (412)
T ss_pred CCCcceeEeeeeeec----chhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCc--------HHHHHHHHHhcccc
Confidence 477777777665532 2237899999999999999999777554443 2332222 55677799999999
Q ss_pred CCCcccHHHHHHHHHhC
Q 002711 273 NLGYIELYNLEMLLLQA 289 (889)
Q Consensus 273 ~dG~Is~~EF~~~l~~~ 289 (889)
.||++.-.+|--+++-.
T Consensus 309 eDg~~ge~~ls~ilq~~ 325 (412)
T KOG4666|consen 309 EDGISGEHILSLILQVV 325 (412)
T ss_pred cccccchHHHHHHHHHh
Confidence 99999999998887653
No 204
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=78.84 E-value=4.1 Score=35.52 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccC--ChHHHHHHHHHHhcCC----CCceeeHHHHHHHHHh
Q 002711 179 ASELFDALARRRGLTSSSITKSELRGFWEQITDQ--SFDARLETFFDMVDKN----LDGRITEEEVKEIIAL 244 (889)
Q Consensus 179 ~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~--~~ee~l~~aF~~~Dkd----~dG~It~eEl~~vl~~ 244 (889)
+..||..+.. + .+.++.++|..++..-... ..++.++.+++.|..+ ..+.+|.++|...|.+
T Consensus 2 i~~if~~ys~-~---~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-D---KEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-T---SSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-C---CCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 4667776533 3 3899999999999774433 3578888899998766 4799999999999863
No 205
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=77.24 E-value=14 Score=44.89 Aligned_cols=98 Identities=12% Similarity=0.159 Sum_probs=67.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHH
Q 002711 180 SELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVE 259 (889)
Q Consensus 180 ~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~ 259 (889)
.-+.+.+...|.+++|.+++.|-..+..++.-+..+.+++..|+..|.-++|++..+|+.+........ .
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r----------p 205 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR----------P 205 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC----------c
Confidence 334444445555556999999998888888777788889999999999999999999988877532111 1
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHhC
Q 002711 260 EYAALIMEELDPHNLGYIELYNLEMLLLQA 289 (889)
Q Consensus 260 e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 289 (889)
.+..+|.++--+ .++++.+++..++...
T Consensus 206 -ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 206 -EVYFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred -hHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 223355554433 6677777777776654
No 206
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.06 E-value=1.9 Score=54.21 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=98.6
Q ss_pred CcccHHHHHHHHHccc-CCCccchhhhcccccCC-CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh----c----
Q 002711 141 GTEGWGEVEKRFDELA-VDGMLPKSSFGQCIGMN-ESKDFASELFDALARRRGLTSSSITKSELRGFWEQI----T---- 210 (889)
Q Consensus 141 ~~~~~~~l~~~F~~ld-~dG~Ls~~ef~~~lg~~-~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~----~---- 210 (889)
+..+.....++|..+. ++|.++-+.-+.++... -......++.+ +.|.+. +|.+++.||..+|..+ .
T Consensus 124 ~~qe~aky~q~f~s~~p~~g~~sg~~~~pil~~s~Lp~~~l~~iw~-l~d~d~--~g~Ld~~ef~~am~l~~~~l~~~~~ 200 (847)
T KOG0998|consen 124 TPQEQAKYDQIFRSLSPSNGLLSGDKAKPILLNSKLPSDVLGRIWE-LSDIDK--DGNLDRDEFAVAMHLINDLLNGNSE 200 (847)
T ss_pred CHHHHHHHHHHHhccCCCCCccccchhhhhhhcCCCChhhhccccc-cccccc--cCCCChhhhhhhhhHHHHHhhcccC
Confidence 4456678888999999 89999988888777432 23344556666 455554 4999999998876542 1
Q ss_pred ---------------------------------------------------------------------------cCChH
Q 002711 211 ---------------------------------------------------------------------------DQSFD 215 (889)
Q Consensus 211 ---------------------------------------------------------------------------~~~~e 215 (889)
...+.
T Consensus 201 p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~ 280 (847)
T KOG0998|consen 201 PVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPS 280 (847)
T ss_pred CCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChH
Confidence 01112
Q ss_pred --HHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 216 --ARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 216 --e~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
.+...+|...|++.+|.|+-.+...++.. .+++ .+.++.+-..+|.+++|.|+++||.-.|....
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~----~gl~------~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLP----FGLS------KPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred HHHHHHHHHHhccccCCCccccccccccccc----CCCC------hhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 24555799999999999999999988852 3444 33455678889999999999999987776544
No 207
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=71.94 E-value=34 Score=38.69 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhh
Q 002711 179 ASELFDALARRRGLTSSSITKSELRGFWEQ-ITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALSA 246 (889)
Q Consensus 179 ~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~-~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~ 246 (889)
+..|-..|||++ +|.||.+|=-+|+.. +...+...+=+..|.- .|-.||.+||-+....+.
T Consensus 70 ir~iHrqmDDD~---nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~Se 131 (575)
T KOG4403|consen 70 IRDIHRQMDDDH---NGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKESE 131 (575)
T ss_pred HHHHHHhccccc---CCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHhhh
Confidence 344444444443 499999988888754 4444444444445553 367899999999887543
No 208
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=71.54 E-value=20 Score=34.35 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=52.9
Q ss_pred ccccccc--cCcccHHHHHHHHHccc---C-CCccchhhhcccccCCCCHHHHHHHHHHHHhhCCCCCCcccHH--HHHH
Q 002711 133 LKFITKN--VGTEGWGEVEKRFDELA---V-DGMLPKSSFGQCIGMNESKDFASELFDALARRRGLTSSSITKS--ELRG 204 (889)
Q Consensus 133 L~~i~~~--~~~~~~~~l~~~F~~ld---~-dG~Ls~~ef~~~lg~~~~~~~~~~lf~~l~~~d~~~~G~Id~~--EF~~ 204 (889)
||++.+. +.--++..+.+.|++.. . |..|+..|+..++ .++|+.+..+.+ +..+.. ..-
T Consensus 26 LR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L---------~~iy~~l~~~~p---~~~~i~~~~v~- 92 (127)
T PF09068_consen 26 LRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLL---------SSIYEFLNKRLP---TLHQIPSRPVD- 92 (127)
T ss_dssp HHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHH---------HHHHHHHHHHST---TS--HH------
T ss_pred HHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHH---------HHHHHHHHHHCC---CCCCCCchhHH-
Confidence 5666554 34455667888898876 2 5566666665444 567765555554 333321 000
Q ss_pred HHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 205 FWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 205 ~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
...+--+..+..+||.+++|+|+.-+++-.+.
T Consensus 93 -------~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 93 -------LAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp -------HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 11233478899999999999999999987764
No 209
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=68.56 E-value=9.3 Score=47.43 Aligned_cols=73 Identities=16% Similarity=0.092 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 215 ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
.++++..|.-+|+...|..+.+|+...+....- .... +++..+.+..++...|++..|.++|.+|...|.+.-
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~--~~e~-ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGY--NTEE-EEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCc--ccch-hHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 468999999999999999999999998864321 1222 467788889999999999999999999999887644
No 210
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=68.20 E-value=3.5 Score=44.69 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=40.5
Q ss_pred CCCcccHHHHHHHHHHhcc-CChHHHHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 193 TSSSITKSELRGFWEQITD-QSFDARLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 193 ~~G~Id~~EF~~~~~~~~~-~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
.++.|+..|+.-|-..+.+ .....-.+.+|+.+|.|+|-.||.+|++..|.
T Consensus 346 ~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 346 SNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred ccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 3489999998777655433 33455678999999999999999999999885
No 211
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=63.25 E-value=7.9 Score=45.30 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 217 RLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 217 ~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
+.+.-|..+|.|+.|+++.+++.++|+... .+.+ ++..+.++.|+|.+-+|+++.+||.++|....
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~--~~~d------~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSEN--VGWD------EDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhc--CCCC------HHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 345679999999999999999999997432 1233 44556689999999999999999999887543
No 212
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=60.92 E-value=75 Score=31.42 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=43.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH---hccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhh
Q 002711 180 SELFDALARRRGLTSSSITKSELRGFWEQ---ITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALS 245 (889)
Q Consensus 180 ~~lf~~l~~~d~~~~G~Id~~EF~~~~~~---~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~ 245 (889)
+++|..+......+...++=..|..++.. +........+..+|..+-..+...|+.++|.++|...
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 45666655433222367888888888876 2333456788899999877777789999999888643
No 213
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=59.52 E-value=13 Score=46.97 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=45.4
Q ss_pred HHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 221 FFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 221 aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
-|+.||.||.|.|++.||...|.. ..... +..++-++.-+..|.+...+|+||++-..+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~---~k~yt------qse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG---HKHYT------QSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc---cccch------hHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 377789999999999999999862 11122 334555788888888899999999987754
No 214
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=53.53 E-value=39 Score=33.95 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHH
Q 002711 217 RLETFFDMVDKNLDGRITEEEVKE 240 (889)
Q Consensus 217 ~l~~aF~~~Dkd~dG~It~eEl~~ 240 (889)
.||+=-..||.|+||.|..-|--.
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~ 31 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQ 31 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHH
Confidence 466666778999999998887643
No 215
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.37 E-value=19 Score=41.38 Aligned_cols=61 Identities=21% Similarity=0.180 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 218 LETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 218 l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
.-.-|+.+-.|-+|+|+-.--++++. ..++. -+++..|.+..|.|.||.++++||...|.-
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFt----KSklp------i~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFT----KSKLP------IEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhh----hccCc------hHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 44458888999999999888888874 22344 234566899999999999999999998864
No 216
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=50.31 E-value=16 Score=31.03 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcC-CC---CCCcccHHHHHH
Q 002711 213 SFDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELD-PH---NLGYIELYNLEM 284 (889)
Q Consensus 213 ~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D-~d---~dG~Is~~EF~~ 284 (889)
...|.+..+|+.+ .++.++||.+||++.+.- +++ +++..-|.... ++ .-|..+|..|.+
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-----------e~a-ey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-----------EQA-EYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-----------CCH-HHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcCc-----------HHH-HHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 3457899999999 788899999999987631 223 34333333332 22 126688887764
No 217
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=49.77 E-value=24 Score=38.83 Aligned_cols=90 Identities=22% Similarity=0.232 Sum_probs=60.0
Q ss_pred HHHHHHHccc--CCCccchhhhccc---cc---CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHH
Q 002711 147 EVEKRFDELA--VDGMLPKSSFGQC---IG---MNESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARL 218 (889)
Q Consensus 147 ~l~~~F~~ld--~dG~Ls~~ef~~~---lg---~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l 218 (889)
+|.+=|+.+- .++......+... +. ....+..+.=||.-+|. |.++.++..|+...- ....|.-+
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~---N~Dl~Ld~sEl~~I~----ldknE~Ci 284 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDT---NYDLLLDQSELRAIE----LDKNEACI 284 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhcccc---ccccccCHHHhhhhh----ccCchhHH
Confidence 5666677665 3333333333222 21 12345667778875554 345999999976543 34456779
Q ss_pred HHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 219 ETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 219 ~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
+-+|+++|...||.|+-+|.-..+.
T Consensus 285 kpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 285 KPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred HHHHhhhcccccCccccchhhhhhc
Confidence 9999999999999999999988775
No 218
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=48.79 E-value=53 Score=33.01 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHH-HHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 002711 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERV-EEYAALIMEELDPHNLGYIELYNLEMLL 286 (889)
Q Consensus 215 ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~-~e~~~~i~~e~D~d~dG~Is~~EF~~~l 286 (889)
.++.+.+|..+++.+.+.+|..|+.++++.....+.. ...-+ .-++..+. .+-.|.||.+..|+-+.+.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~--~GW~a~~~EW~~~y-~L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDP--FGWFAAFFEWGALY-ILAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCc--chhhhhhhHHHHHH-HHHcCcCCcEeHHHHhhhc
Confidence 4689999999999999999999999999731111111 01100 11122222 2336779999988877654
No 219
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=47.41 E-value=29 Score=41.49 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHH
Q 002711 215 DARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNL 282 (889)
Q Consensus 215 ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF 282 (889)
..-++..|+.+|++++|.||..+|..-+...-.. ++-+-++.+++-+|+++| ..+.+|-
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~--------~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAG--------DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhh--------hHHHHHHHHHhhccCCcc-ccccccc
Confidence 4457889999999999999999988777532211 123446678999999999 7777765
No 220
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=45.45 E-value=2.6e+02 Score=26.78 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=60.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH--h-----ccCChHHHHHHHHHHhcCCCC--ceeeHHHHHHHHHhhh----
Q 002711 180 SELFDALARRRGLTSSSITKSELRGFWEQ--I-----TDQSFDARLETFFDMVDKNLD--GRITEEEVKEIIALSA---- 246 (889)
Q Consensus 180 ~~lf~~l~~~d~~~~G~Id~~EF~~~~~~--~-----~~~~~ee~l~~aF~~~Dkd~d--G~It~eEl~~vl~~~~---- 246 (889)
.++++.+.+- +.|-|.-|..++.- + .+.-.-..+..+|+....+.. ..|+..|+..++...-
T Consensus 3 ~~l~~~l~~~-----n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~ 77 (127)
T PF09068_consen 3 TELMQELQDF-----NNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLN 77 (127)
T ss_dssp HHHHHHGGGG-----TT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----hhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHH
Confidence 3556655333 46778888888744 1 122234567788888776654 7899999999997422
Q ss_pred -hcccchhh-----HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 002711 247 -SANKLSKI-----QERVEEYAALIMEELDPHNLGYIELYNLEMLLL 287 (889)
Q Consensus 247 -~~~~l~~~-----~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~ 287 (889)
.......+ +.-++-.++-++.-+|+++.|.|+.-+|+..+.
T Consensus 78 ~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 78 KRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 11111111 133344567788899999999999999987764
No 221
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=44.64 E-value=73 Score=31.51 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=44.1
Q ss_pred HHHHHHHh---cCCCCceeeHHHHHHHHHhhhh-cccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 218 LETFFDMV---DKNLDGRITEEEVKEIIALSAS-ANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 218 l~~aF~~~---Dkd~dG~It~eEl~~vl~~~~~-~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
|+.+|..| -+.+...++-.-|..+++.+.- ..++. ...++.||..+-..+...|+|++|+..|..
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t------~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLT------STDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-------HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCc------hHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 34555555 4556668999999999985432 11232 456778999987777778999999999875
No 222
>PF14145 YrhK: YrhK-like protein
Probab=42.55 E-value=57 Score=26.78 Aligned_cols=52 Identities=21% Similarity=0.435 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccceehhhhhhhhhhHhHHHHHHHHh
Q 002711 520 WYSHHLFVIVYVLFIIHGYFLYLSKKWYKRTTWMYLAVPVLLYACERLIRAFR 572 (889)
Q Consensus 520 ~~~H~l~~i~~vll~~H~~~~~l~~~w~~~~~w~y~~~~~~l~~~drl~R~~r 572 (889)
...|.+.-++-.++++-|...++...++....|+|++.. +++.+--++|..|
T Consensus 5 e~~~~~~d~~~~~~FliGSilfl~~~~~~~g~wlFiiGS-~~f~i~~~i~~ir 56 (59)
T PF14145_consen 5 EIISTVNDFIGGLLFLIGSILFLPESLYTAGTWLFIIGS-ILFLIRPIIRLIR 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333434333333344456666666666666788887654 4555555666554
No 223
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=39.75 E-value=60 Score=30.04 Aligned_cols=51 Identities=20% Similarity=0.397 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhhhhHhhccCCchhhhh--ccccchhHHHHHHHHHHHH-HHHHHHhhhh
Q 002711 481 GVVMVVLMAISYTLAQPWFRRNRLNLPKILK--KLTGFNAFWYSHHLFVIVY-VLFIIHGYFL 540 (889)
Q Consensus 481 G~i~lv~~~i~~~~s~~~~Rr~~~~~~~~~~--~~~~ye~F~~~H~l~~i~~-vll~~H~~~~ 540 (889)
|.++++.+.+.++++ .|.+ |+. ....++.+...|+.++.+. ++..+|+...
T Consensus 2 G~~a~~~l~~~~~l~---~R~~------~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~ 55 (125)
T PF01794_consen 2 GILAFALLPLVFLLG---LRNS------PLARLTGISFDRLLRFHRWLGRLAFFLALLHGVLY 55 (125)
T ss_pred HHHHHHHHHHHHHHH---Hhhh------HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655 2332 221 1236888999999988764 5668998653
No 224
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=38.44 E-value=1.7e+02 Score=36.13 Aligned_cols=160 Identities=14% Similarity=0.200 Sum_probs=84.6
Q ss_pred chhHHHHhccccccccc-cC---cccH-HHHHHHHHccc--CCCccchhhhcccccCC----CCHHHHHHHHHHHHhhCC
Q 002711 123 KSGAARALKGLKFITKN-VG---TEGW-GEVEKRFDELA--VDGMLPKSSFGQCIGMN----ESKDFASELFDALARRRG 191 (889)
Q Consensus 123 ~s~~~~al~~L~~i~~~-~~---~~~~-~~l~~~F~~ld--~dG~Ls~~ef~~~lg~~----~~~~~~~~lf~~l~~~d~ 191 (889)
.-.+..-++||+++-+. +. ...| ..+++.+-++| ....|+..+++..|... .+..+..+-|. +++
T Consensus 116 e~e~n~w~~glkw~~~dtl~a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~t----ed~ 191 (1267)
T KOG1264|consen 116 EEEANNWLSGLKWLHQDTLNAPTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFT----EDG 191 (1267)
T ss_pred hHHHHHHhhcchhhhhhhccCCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHh----Hhh
Confidence 44566678889887653 21 2222 37899999998 55679999999888321 12223322222 122
Q ss_pred CCCCcccHHHHHHHHHHhccCChHHHH-H--HHHHH--hcCCCCceeeHHHHHHHHHhhh---hcccchhhHHHHHHHHH
Q 002711 192 LTSSSITKSELRGFWEQITDQSFDARL-E--TFFDM--VDKNLDGRITEEEVKEIIALSA---SANKLSKIQERVEEYAA 263 (889)
Q Consensus 192 ~~~G~Id~~EF~~~~~~~~~~~~ee~l-~--~aF~~--~Dkd~dG~It~eEl~~vl~~~~---~~~~l~~~~~~~~e~~~ 263 (889)
..++.++|++|......+.-......+ . ..|-. =|...--.++..||++++.... .+.....+++-+...++
T Consensus 192 ~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~ 271 (1267)
T KOG1264|consen 192 ARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFID 271 (1267)
T ss_pred hccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHh
Confidence 234899999998877653322211111 1 11211 1222235789999999985211 11111111111111111
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHhC
Q 002711 264 LIMEELDPHNLGYIELYNLEMLLLQA 289 (889)
Q Consensus 264 ~i~~e~D~d~dG~Is~~EF~~~l~~~ 289 (889)
..|.+ -..-+++++||+..|-..
T Consensus 272 D~~re---~~EPyl~v~EFv~fLFSr 294 (1267)
T KOG1264|consen 272 DTMRE---TAEPYLFVDEFVTFLFSR 294 (1267)
T ss_pred hhhhh---ccCcceeHHHHHHHHhhc
Confidence 11111 123589999999988643
No 225
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=38.38 E-value=12 Score=37.87 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=38.9
Q ss_pred HHHhcC-CCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 002711 222 FDMVDK-NLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLL 286 (889)
Q Consensus 222 F~~~Dk-d~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l 286 (889)
|-.+|. -.||++|-.||.-+-.-. ++ ++.-+...|+..|.|+||+|+.+|+-.-+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~-----ip-----me~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL-----IP-----MEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCCc-----cc-----HHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 445554 569999999987654311 11 13334558999999999999999997654
No 226
>PF09842 DUF2069: Predicted membrane protein (DUF2069); InterPro: IPR018643 This family of prokaryotic proteins has no known function but is thought to be a membrane protein.
Probab=37.84 E-value=3.4e+02 Score=25.23 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhcccccccccCcccccCccCccCCCCCCcccccccccchhHHHHHHHHHHHHHHhhhh
Q 002711 418 NFHKVIAVGIAIGVGLHAGAHLTCDFPRLLHATDEEYEPMKPFFGDDRPDDYWWFVKGTEGWTGVVMVVLMAISYTLAQP 497 (889)
Q Consensus 418 ~fHr~ig~~~~~~~~lH~~~~l~~~f~~~~~~~~~~~~~l~~~~~~~~~~~yw~~~~~~~g~tG~i~lv~~~i~~~~s~~ 497 (889)
.=|.|.+.++.+.. +|++..... .|. ..+.|++.+++.+++|+.+.-
T Consensus 54 ~t~~W~sfv~L~YF-~~gv~~a~~-----------------------~~~---------~~~~a~~e~~ls~~lF~~~~~ 100 (109)
T PF09842_consen 54 YTYAWASFVILLYF-IHGVTRAWS-----------------------DPG---------ERWLAWLELLLSVLLFVGAML 100 (109)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhc-----------------------Ccc---------hhHHHHHHHHHHHHHHHHHHH
Confidence 46899998766555 898865432 010 013477777777788888888
Q ss_pred hHhhc
Q 002711 498 WFRRN 502 (889)
Q Consensus 498 ~~Rr~ 502 (889)
+.|-|
T Consensus 101 y~R~r 105 (109)
T PF09842_consen 101 YARWR 105 (109)
T ss_pred HHHHH
Confidence 88865
No 227
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=36.75 E-value=1.3e+02 Score=27.39 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 216 ARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 216 e~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
..++.-|+.+-+ ||++.+++|-+.+.+ .+.+|-+.|..+.+-+.=... ...|+.+|+.....+.-
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIGM-------~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIGM-------KDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT---------S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcCC-------cccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHhh
Confidence 356777888877 899999999998852 222333344333333333333 56799999999887754
No 228
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.57 E-value=27 Score=38.86 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 002711 214 FDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLL 286 (889)
Q Consensus 214 ~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l 286 (889)
+.+.++.+|+.+|..++|+|+-+-++++|.... ..+++ .+++..+=+.+|+.+-|-|-.++|..-.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N--~~vse-----~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN--RLVSE-----PAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhc--ccccC-----HHHHHHhcCccChhhcceEEeccccccc
Confidence 467899999999999999999999999987432 12222 4566666677888888888877765433
No 229
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.14 E-value=51 Score=40.12 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=40.2
Q ss_pred HHHHHHHHccc--CCCccchhhhcccccCC-CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 002711 146 GEVEKRFDELA--VDGMLPKSSFGQCIGMN-ESKDFASELFDALARRRGLTSSSITKSELRGFW 206 (889)
Q Consensus 146 ~~l~~~F~~ld--~dG~Ls~~ef~~~lg~~-~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~ 206 (889)
....++|+.+| .+|+|+-..-..+|+.. ........|.. |.|.|+ ||.++-+||+-+|
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~-LsDvd~--DGkL~~dEfilam 255 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWT-LSDVDG--DGKLSADEFILAM 255 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhhee-eeccCC--CCcccHHHHHHHH
Confidence 35788899998 78888888888777654 23344455555 555555 4888888887665
No 230
>PLN02631 ferric-chelate reductase
Probab=32.44 E-value=65 Score=39.85 Aligned_cols=55 Identities=24% Similarity=0.530 Sum_probs=45.7
Q ss_pred ccccC-CCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 829 KTHFA-RPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 829 ~~~~G-RPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
.+|+| |||+++++.+ ...+++|||++|||++|..+|.+.|...+ ...++||.=+|
T Consensus 642 ~~~~g~rp~~~~i~~~---~~~~~~vgvlv~gp~~~~~~va~~c~s~~---~~~~~f~s~sf 697 (699)
T PLN02631 642 SVHFGSKPNLKKILLE---AEGSEDVGVMVCGPRKMRHEVAKICSSGL---AKNLHFEAISF 697 (699)
T ss_pred eeeecCCCCHHHHHHh---ccCCCceeEEEECcHHHHHHHHHHHhcCC---CcceeEEeecc
Confidence 48998 9999999983 22245899999999999999999999876 45788887766
No 231
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=32.15 E-value=1.1e+02 Score=30.63 Aligned_cols=28 Identities=11% Similarity=-0.196 Sum_probs=22.0
Q ss_pred CcchhHHHHHHHHHHHHhhhhhhhhhhc
Q 002711 414 DDNINFHKVIAVGIAIGVGLHAGAHLTC 441 (889)
Q Consensus 414 d~~~~fHr~ig~~~~~~~~lH~~~~l~~ 441 (889)
.....+|+++|.+.++..+++.+..+..
T Consensus 44 ~~~~~~H~~~G~~~~~~~~~~~~~~~~~ 71 (188)
T PF00033_consen 44 QLLRWLHFSLGIVFLALFLLRILWRLFS 71 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455799999999999999888765543
No 232
>MTH00156 CYTB cytochrome b; Provisional
Probab=31.87 E-value=8.1e+02 Score=27.83 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=20.4
Q ss_pred hhhhccccccCCceecCCcchhHHHHHHHHHHHHhhhhh
Q 002711 397 TITWLRSRTKLGQVVPFDDNINFHKVIAVGIAIGVGLHA 435 (889)
Q Consensus 397 ~l~~Lr~~t~l~~~~~~d~~~~fHr~ig~~~~~~~~lH~ 435 (889)
...|+.|-..+| .....++..+|=.+..++++.+.+|.
T Consensus 150 l~~~i~Gg~~v~-~~Tl~Rff~lH~llP~~i~~li~~H~ 187 (356)
T MTH00156 150 LVQWIWGGFSVD-NATLTRFFTFHFLLPFIILAMVMIHL 187 (356)
T ss_pred HHHHhcccCCCC-cchHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345666512222 12344556667666666666666664
No 233
>PLN02292 ferric-chelate reductase
Probab=31.41 E-value=69 Score=39.68 Aligned_cols=54 Identities=20% Similarity=0.478 Sum_probs=45.7
Q ss_pred ccccC-CCCHHHHHHHHHhhCCCCeEEEEEeCChhHHHHHHHHHHhhhcCCCCcEEEEeeCC
Q 002711 829 KTHFA-RPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 829 ~~~~G-RPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~f~fh~E~F 889 (889)
.+|+| |||+++++. +..+++|||++|||++|..+|.+.|+..+ ...|+||.=+|
T Consensus 646 ~~~~g~rp~~~~i~~----~~~~~~vgvlv~gp~~~~~~va~~c~s~~---~~~~~~~s~sf 700 (702)
T PLN02292 646 NIHYGERPNLNKLLV----GLKGSSVGVLVCGPKKMRQKVAKICSSGL---AENLHFESISF 700 (702)
T ss_pred eeeccCCCCHHHHHH----hcCCCceeEEEECcHHHHHHHHHHHhcCC---CcceeEEeecc
Confidence 57888 999999994 34467899999999999999999999876 45788887766
No 234
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=30.70 E-value=2.3e+02 Score=35.44 Aligned_cols=126 Identities=13% Similarity=0.216 Sum_probs=77.7
Q ss_pred CCCccchhhhcccccCCCCHHHHHHHHHHHHhhC--CCCCCc-----ccHHHHHHHHHHhccCChHHHHHHHHHHhcCCC
Q 002711 157 VDGMLPKSSFGQCIGMNESKDFASELFDALARRR--GLTSSS-----ITKSELRGFWEQITDQSFDARLETFFDMVDKNL 229 (889)
Q Consensus 157 ~dG~Ls~~ef~~~lg~~~~~~~~~~lf~~l~~~d--~~~~G~-----Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~ 229 (889)
.+|+|....+.+.+.....+ .++..++.... .+.+.. .+++.|..++..+ .+..+++.+|..+--|+
T Consensus 161 ~~grip~knI~k~F~~~k~~---KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~kl---cpR~eie~iF~ki~~~~ 234 (1189)
T KOG1265|consen 161 FEGRIPVKNIIKTFSADKKE---KRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKL---CPRPEIEEIFRKISGKK 234 (1189)
T ss_pred ccccccHHHHHHHhhcCCch---hHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhc---CCchhHHHHHHHhccCC
Confidence 56777766666665332111 44444443321 111133 4455555555544 45568999999998888
Q ss_pred CceeeHHHHHHHHHhhhhcccchhhH--HHHHHHHHHHHHhcCCCCC----CcccHHHHHHHHHh
Q 002711 230 DGRITEEEVKEIIALSASANKLSKIQ--ERVEEYAALIMEELDPHNL----GYIELYNLEMLLLQ 288 (889)
Q Consensus 230 dG~It~eEl~~vl~~~~~~~~l~~~~--~~~~e~~~~i~~e~D~d~d----G~Is~~EF~~~l~~ 288 (889)
.-++|+++|.+++........|.++- ---.+.+..+++.+.+|++ |.|+-+-|...+..
T Consensus 235 kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 235 KPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 88999999999997433222232210 0014456779999988865 99999999987765
No 235
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=28.91 E-value=76 Score=32.72 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhh
Q 002711 516 FNAFWYSHHLFVIVYVLFIIHGYFL 540 (889)
Q Consensus 516 ye~F~~~H~l~~i~~vll~~H~~~~ 540 (889)
|-.|+.+|.......+++++|....
T Consensus 126 ~~lffitH~svfls~v~~~vhfreR 150 (236)
T COG5522 126 FLLFFITHISVFLSAVILIVHFRER 150 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 7899999998777777888998764
No 236
>MTH00191 CYTB cytochrome b; Provisional
Probab=28.71 E-value=5.2e+02 Score=29.47 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=16.3
Q ss_pred ccccchhH-HHHHHHHHHHHHHhhhhhHhhc
Q 002711 473 VKGTEGWT-GVVMVVLMAISYTLAQPWFRRN 502 (889)
Q Consensus 473 ~~~~~g~t-G~i~lv~~~i~~~~s~~~~Rr~ 502 (889)
++..++-. |++++ ++.++.....|++-|.
T Consensus 278 Lr~iP~k~~Gll~~-~~~i~~l~~lPfLdrs 307 (365)
T MTH00191 278 LRSIPNKLGGVLAL-VMSILVLFLLPLLHTS 307 (365)
T ss_pred HhcccchHHHHHHH-HHHHHHHHHHHHHhcc
Confidence 45555544 44444 4455556678887655
No 237
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=28.49 E-value=34 Score=40.30 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=30.8
Q ss_pred CcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 195 SSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 195 G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
|.+..+..+..+......-.++.+...-+..|.+-+|++..+|+.+++.
T Consensus 608 ~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 608 AYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 6666666666665555455566666666666666666766666666664
No 238
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=28.22 E-value=1.5e+02 Score=26.62 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=44.9
Q ss_pred CCCccchhhhcccc----c-CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc-cCChHHHHHHHHHHhcCCCC
Q 002711 157 VDGMLPKSSFGQCI----G-MNESKDFASELFDALARRRGLTSSSITKSELRGFWEQIT-DQSFDARLETFFDMVDKNLD 230 (889)
Q Consensus 157 ~dG~Ls~~ef~~~l----g-~~~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~-~~~~ee~l~~aF~~~Dkd~d 230 (889)
.||.++.+|....- . +..+.....++++.+..... ...++.+|...+.... ......-+..++++-- .|
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~--AD 86 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEE---EAPDLYEFTSLIKEHFDYEERLELVEALWEVAY--AD 86 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hc
Confidence 45666655543322 1 12244556777775544433 5677888887765533 1122334566666654 56
Q ss_pred ceeeHHHHHHHH
Q 002711 231 GRITEEEVKEII 242 (889)
Q Consensus 231 G~It~eEl~~vl 242 (889)
|.++..|-.-+-
T Consensus 87 G~~~~~E~~~l~ 98 (104)
T cd07313 87 GELDEYEEHLIR 98 (104)
T ss_pred CCCCHHHHHHHH
Confidence 888888866544
No 239
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=27.77 E-value=2.6e+02 Score=28.41 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=49.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhhhcccccccccCcccccCccCccCCCCCCcccccccccchhHHHHHHHHHHHHHHh
Q 002711 415 DNINFHKVIAVGIAIGVGLHAGAHLTCDFPRLLHATDEEYEPMKPFFGDDRPDDYWWFVKGTEGWTGVVMVVLMAISYTL 494 (889)
Q Consensus 415 ~~~~fHr~ig~~~~~~~~lH~~~~l~~~f~~~~~~~~~~~~~l~~~~~~~~~~~yw~~~~~~~g~tG~i~lv~~~i~~~~ 494 (889)
+....|..+|.+++.+.++=.+.-....|. .-.+.|. .+.| ++|+.++.+|++...+
T Consensus 78 ~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~-----------~~~~lf~---spH~---------~~Gl~~~~L~~~s~al 134 (175)
T PF13301_consen 78 KARDRHYRLGFALLAFMGLGALGGQLGTYR-----------QNGKLFW---SPHL---------WAGLAVVGLMAFSAAL 134 (175)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcchHHHHH-----------cCCCCcc---CchH---------HHHHHHHHHHHHHHHH
Confidence 445689888888887776654433222110 0111121 1233 4799888888776555
Q ss_pred hhhhHhhccCCchhhhhccccchhHHHHHHHHHHH-HHHHHHHhh
Q 002711 495 AQPWFRRNRLNLPKILKKLTGFNAFWYSHHLFVIV-YVLFIIHGY 538 (889)
Q Consensus 495 s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~-~vll~~H~~ 538 (889)
+....+-+ -......|..+..+ .+++.+|+.
T Consensus 135 ~~~i~~g~-------------~~~~R~lHi~lN~~~l~Lf~~q~i 166 (175)
T PF13301_consen 135 VPQIQKGN-------------RPWARRLHIYLNSLALLLFAWQAI 166 (175)
T ss_pred HHHHccCC-------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 44433321 23567799987655 455677765
No 240
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=25.97 E-value=1.6e+02 Score=27.18 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=44.7
Q ss_pred HHhcCCCCceeeHHHHHHHHHhhhhcc-cchhhH-HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCC
Q 002711 223 DMVDKNLDGRITEEEVKEIIALSASAN-KLSKIQ-ERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAP 290 (889)
Q Consensus 223 ~~~Dkd~dG~It~eEl~~vl~~~~~~~-~l~~~~-~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 290 (889)
++||.+.+-+||.++++++++....-. -..+.. +--..+.-+|+-|...++...++-+=+.++++-..
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 468999999999999999997311100 011112 22245566677777777777888877777776544
No 241
>MTH00074 CYTB cytochrome b; Provisional
Probab=25.72 E-value=8.1e+02 Score=28.10 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=14.2
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhhHhhc
Q 002711 473 VKGTEGWTGVVMVVLMAISYTLAQPWFRRN 502 (889)
Q Consensus 473 ~~~~~g~tG~i~lv~~~i~~~~s~~~~Rr~ 502 (889)
++..++-.|-++..++.++....+|++.+.
T Consensus 282 Lr~iP~k~~Gv~~~~~~i~~L~lLPfi~~s 311 (380)
T MTH00074 282 LRSIPNKLGGVLALLASILILMLIPMLHTS 311 (380)
T ss_pred HhcccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 445555443333334444445556665433
No 242
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=24.95 E-value=2.3e+02 Score=25.44 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHH---HHHHHHHhcCCCCceeeHHHHHHH
Q 002711 178 FASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDAR---LETFFDMVDKNLDGRITEEEVKEI 241 (889)
Q Consensus 178 ~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~---l~~aF~~~Dkd~dG~It~eEl~~v 241 (889)
...++.+.+..... ...++.+|...+....+..++.+ ++.++.+-- .||.++..|-.-+
T Consensus 37 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~--ADG~~~~~E~~~l 98 (106)
T cd07316 37 ARREAIRLFNEGKE---SDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAY--ADGELSEAERELL 98 (106)
T ss_pred HHHHHHHHHHHhCc---CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HcCCCCHHHHHHH
Confidence 34555554443333 22677888777766433444443 555666554 4688888886544
No 243
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=24.94 E-value=1.6e+02 Score=28.70 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHhCCCc
Q 002711 256 ERVEEYAALIMEELDPHNLGYIELYNLEMLLLQAPSQ 292 (889)
Q Consensus 256 ~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~~ 292 (889)
+|+.+.++.|++.+-.+ .++=|+++.++.+.|++
T Consensus 131 ~Qik~L~~~Ii~~akae---~~dtE~Ye~vwkKmPaY 164 (175)
T PF04876_consen 131 DQIKTLCEQIIEMAKAE---SSDTEHYEKVWKKMPAY 164 (175)
T ss_pred HHHHHHHHHHHHHHhcc---CCchHHHHHHHHHhhHH
Confidence 33444455566665543 25678899999999965
No 244
>PLN02222 phosphoinositide phospholipase C 2
Probab=24.86 E-value=1.8e+02 Score=35.26 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCC-CCCCcccHHHHHHHHHh
Q 002711 216 ARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDP-HNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 216 e~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~-d~dG~Is~~EF~~~l~~ 288 (889)
+++..+|..|-. ++.+|.++|..+|.........+ .+.+..||+.+.. -+.+.++++.|...|..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~------~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKAT------REDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCC------HHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 466666666642 35677777776665322111111 2233334444321 23455778888877765
No 245
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=24.77 E-value=65 Score=26.59 Aligned_cols=25 Identities=28% Similarity=0.114 Sum_probs=21.4
Q ss_pred CcchhHHHHHHHHHHHHhhhhhhhh
Q 002711 414 DDNINFHKVIAVGIAIGVGLHAGAH 438 (889)
Q Consensus 414 d~~~~fHr~ig~~~~~~~~lH~~~~ 438 (889)
......|.|.|.++++++++|...|
T Consensus 39 ~~~~~iH~~~g~~~~~l~~~Hl~lh 63 (64)
T PF14358_consen 39 HFWRNIHLWAGYLFLILIILHLGLH 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455799999999999999998765
No 246
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=24.47 E-value=83 Score=28.39 Aligned_cols=54 Identities=30% Similarity=0.303 Sum_probs=28.2
Q ss_pred CCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 002711 229 LDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPHNLGYIELYNLEMLLLQ 288 (889)
Q Consensus 229 ~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 288 (889)
.||.++.+|...+-.......+++ ++..+.+++.+....+...++++|.+.+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLD------AEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcC------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 367777777776655332222232 122233444444444445667777776654
No 247
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=23.93 E-value=1.9e+02 Score=32.75 Aligned_cols=66 Identities=17% Similarity=0.355 Sum_probs=44.1
Q ss_pred cccccccccchhHHHHHHHHHHHHHHhhhhhHhhccCCchhhhhccccchhHHHHHHHHHHH-HHHHHHHhhhhh
Q 002711 468 DYWWFVKGTEGWTGVVMVVLMAISYTLAQPWFRRNRLNLPKILKKLTGFNAFWYSHHLFVIV-YVLFIIHGYFLY 541 (889)
Q Consensus 468 ~yw~~~~~~~g~tG~i~lv~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~-~vll~~H~~~~~ 541 (889)
+-|.|.....-.+|++++.+|.+++.+|++.-+-- ++++ +-+.-|..|...+++ +++++.|-...+
T Consensus 32 ~~~s~~~~~~qf~g~iaL~~msl~~~LA~R~~~iE-----~~~~---GlD~~Y~~HK~~sIlailL~l~H~~~~~ 98 (438)
T COG4097 32 NLLSWRLEFSQFLGFIALALMSLIFLLATRLPLIE-----AWFN---GLDKIYRFHKYTSILAILLLLAHNFILF 98 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHh-----hhhh---hhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566667889999999999999987543321 0111 335667889988776 456688876543
No 248
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=23.81 E-value=1.3e+02 Score=25.55 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=33.8
Q ss_pred CCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHHhh
Q 002711 194 SSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIALS 245 (889)
Q Consensus 194 ~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~ 245 (889)
+-.+.|..+..++... .+.+++..+...|+.=..+.|+++||-..++..
T Consensus 6 sp~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3567766666665543 345556666666666678999999999988743
No 249
>MTH00131 CYTB cytochrome b; Provisional
Probab=22.97 E-value=7.4e+02 Score=28.39 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=14.3
Q ss_pred ccccchhH-HHHHHHHHHHHHHhhhhhHhhc
Q 002711 473 VKGTEGWT-GVVMVVLMAISYTLAQPWFRRN 502 (889)
Q Consensus 473 ~~~~~g~t-G~i~lv~~~i~~~~s~~~~Rr~ 502 (889)
++..++-. |++++ ++.++....+|++.+.
T Consensus 281 LR~iP~kl~Gv~~~-~~~i~~L~lLPfi~~~ 310 (380)
T MTH00131 281 LRSIPNKLGGVLAL-LFSILVLMVVPILHTS 310 (380)
T ss_pred HhhccccchHHHHH-HHHHHHHHHHHHHccC
Confidence 34444433 54444 3444444556766544
No 250
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=22.92 E-value=3.6e+02 Score=27.88 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=27.7
Q ss_pred Hhhcc-ccEEEEEEEEecCCEEEEEEecCCCCccCCccEE
Q 002711 571 FRSGY-KSVRILKVAVYPGNVLALQMSKPQGFKYTSGQYI 609 (889)
Q Consensus 571 ~r~~~-~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv 609 (889)
+|+++ ++.+--.|+...+|+.++.+...-.-+.+||-|.
T Consensus 136 Fr~ky~RdyTyG~VeEv~~~~v~V~V~dDI~ANVkPg~Yw 175 (206)
T PF09874_consen 136 FRSKYGRDYTYGVVEEVKENLVRVFVHDDIAANVKPGYYW 175 (206)
T ss_pred eeeeecccceeEEEEEecCCEEEEEEccchhhcCCCCeEE
Confidence 56554 3445455677788999998877656778999875
No 251
>MTH00053 CYTB cytochrome b; Provisional
Probab=22.28 E-value=7.9e+02 Score=28.18 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=14.0
Q ss_pred ccccchhH-HHHHHHHHHHHHHhhhhhHhhc
Q 002711 473 VKGTEGWT-GVVMVVLMAISYTLAQPWFRRN 502 (889)
Q Consensus 473 ~~~~~g~t-G~i~lv~~~i~~~~s~~~~Rr~ 502 (889)
+++.++-. |+++++ +.++....+|++-+.
T Consensus 282 LrsiPnKlgGvialv-~sIlvLflLP~i~~~ 311 (381)
T MTH00053 282 LRSIPNKLGGVVALV-FSILVLFFLPYLHKS 311 (381)
T ss_pred HHhhcchhHHHHHHH-HHHHHHHHHHHHHHh
Confidence 45555544 555444 334433447766443
No 252
>PLN00151 potassium transporter; Provisional
Probab=22.10 E-value=5.2e+02 Score=32.61 Aligned_cols=20 Identities=20% Similarity=0.702 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHhc
Q 002711 340 VMLLWLSICAGLFTWKFIQY 359 (889)
Q Consensus 340 ~~~l~~~~~v~lf~~~~~~y 359 (889)
++++|++.+.++-+|+..+|
T Consensus 303 ImllWFl~i~~iGiynI~~~ 322 (852)
T PLN00151 303 ALALWFCSLGGIGIYNLVKY 322 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 57889999888888888776
No 253
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=21.90 E-value=4.6e+02 Score=25.89 Aligned_cols=22 Identities=9% Similarity=-0.056 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhh
Q 002711 417 INFHKVIAVGIAIGVGLHAGAH 438 (889)
Q Consensus 417 ~~fHr~ig~~~~~~~~lH~~~~ 438 (889)
..+|.++|.++++..+++.+..
T Consensus 43 ~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 43 RNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999998888776654
No 254
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=21.82 E-value=3.7e+02 Score=27.90 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHH-HHHHHhhh
Q 002711 516 FNAFWYSHHLFVIVYV-LFIIHGYF 539 (889)
Q Consensus 516 ye~F~~~H~l~~i~~v-ll~~H~~~ 539 (889)
.+....+|++.+++++ ++++|.+.
T Consensus 146 ~~~~~~~H~~~a~~~i~~iivHiy~ 170 (211)
T PRK10639 146 IRFALMLHSFAAVALIVVIMVHIYA 170 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999887765 45788654
No 255
>MTH00086 CYTB cytochrome b; Provisional
Probab=21.69 E-value=1.2e+03 Score=26.55 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=14.3
Q ss_pred ccccchh-HHHHHHHHHHHHHHhhhhhHhh
Q 002711 473 VKGTEGW-TGVVMVVLMAISYTLAQPWFRR 501 (889)
Q Consensus 473 ~~~~~g~-tG~i~lv~~~i~~~~s~~~~Rr 501 (889)
+++.++- .|+++++ +.++....+|+.-+
T Consensus 269 LRsiP~KlgGvl~~~-~silvL~~lP~l~~ 297 (355)
T MTH00086 269 LRAIPNKVLGVIALL-MSIVVFYFFIFVNN 297 (355)
T ss_pred HHhhhhhhHHHHHHH-HHHHHHHHHHHHcc
Confidence 4555553 4555444 34444556776543
No 256
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=21.53 E-value=98 Score=34.69 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCceeeHHHHHHHHH
Q 002711 178 FASELFDALARRRGLTSSSITKSELRGFWEQITDQSFDARLETFFDMVDKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 178 ~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~~~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~ 243 (889)
..+.+|+.+-... ++..++++.+.........+..+++.+.+..+.|.+++|......+.+.+.
T Consensus 58 ~~q~~f~~vk~~~--q~~~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~ 121 (427)
T KOG2557|consen 58 LGQRMFDMVKQRR--QDDKMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLV 121 (427)
T ss_pred ccceEeeeccCcc--CCccchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 3455666332222 246788888888777777788889999999999999999999999988885
No 257
>PLN02952 phosphoinositide phospholipase C
Probab=21.45 E-value=2.2e+02 Score=34.69 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=52.9
Q ss_pred CCCccchhhhccccc---CC--CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhccC--ChHHHHHHHHHHh----
Q 002711 157 VDGMLPKSSFGQCIG---MN--ESKDFASELFDALARRRGLTSSSITKSELRGFWEQITDQ--SFDARLETFFDMV---- 225 (889)
Q Consensus 157 ~dG~Ls~~ef~~~lg---~~--~~~~~~~~lf~~l~~~d~~~~G~Id~~EF~~~~~~~~~~--~~ee~l~~aF~~~---- 225 (889)
+.|.++.++|..+.. .. .....+.+||..+.. + ++.++.++|..|+...... ...+..+.+|+.+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~---~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-G---GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-C---CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhc
Confidence 468999999965542 21 245678888886542 2 2689999999999875443 2344455555433
Q ss_pred ---cCCCCceeeHHHHHHHHH
Q 002711 226 ---DKNLDGRITEEEVKEIIA 243 (889)
Q Consensus 226 ---Dkd~dG~It~eEl~~vl~ 243 (889)
.+.+.+.++.+.|...|.
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccccccCcCHHHHHHHHc
Confidence 112334578888877774
No 258
>MTH00100 CYTB cytochrome b; Provisional
Probab=21.45 E-value=5e+02 Score=29.74 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=14.3
Q ss_pred ccccchhH-HHHHHHHHHHHHHhhhhhHhhc
Q 002711 473 VKGTEGWT-GVVMVVLMAISYTLAQPWFRRN 502 (889)
Q Consensus 473 ~~~~~g~t-G~i~lv~~~i~~~~s~~~~Rr~ 502 (889)
++++++-. |++++ ++.++....+|++.+.
T Consensus 281 Lr~ip~kl~Gv~~~-~~~~~~l~lLPfi~~~ 310 (379)
T MTH00100 281 LRSIPNKLGGVLAL-LLSILILAIIPLLHTS 310 (379)
T ss_pred HHhhcccchHHHHH-HHHHHHHHHHHHHhcc
Confidence 34444433 44444 3344445556766554
No 259
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=21.16 E-value=1.4e+02 Score=37.21 Aligned_cols=55 Identities=20% Similarity=0.162 Sum_probs=40.0
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhHhhccCCchhhhhcccc--chhHHHHHHHHHHH-HHHHHHHhhh
Q 002711 476 TEGWTGVVMVVLMAISYTLAQPWFRRNRLNLPKILKKLTG--FNAFWYSHHLFVIV-YVLFIIHGYF 539 (889)
Q Consensus 476 ~~g~tG~i~lv~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~--ye~F~~~H~l~~i~-~vll~~H~~~ 539 (889)
+..-+|+++.++|.+++.++. |. +++.++++ ||.|...|+.++-+ +++..+|+..
T Consensus 155 va~R~G~la~~~Lpll~llv~---Rn------n~l~~ltGis~e~~i~fHrWlGr~~~llallH~i~ 212 (722)
T PLN02844 155 VATRFGLLAEACLALLLLPVL---RG------LALFRLLGIQFEASVRYHVWLGTSMIFFATVHGAS 212 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cc------cHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888877665 32 34555555 99999999998865 4556899864
No 260
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.12 E-value=2.5e+02 Score=29.52 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=4.8
Q ss_pred hhhhhHhHHH
Q 002711 557 VPVLLYACER 566 (889)
Q Consensus 557 ~~~~l~~~dr 566 (889)
+++.+|+++.
T Consensus 214 ig~~i~l~~~ 223 (230)
T PF03904_consen 214 IGLFIYLYEW 223 (230)
T ss_pred HHHHHHHHHH
Confidence 3444555554
No 261
>MTH00022 CYTB cytochrome b; Validated
Probab=20.99 E-value=7.4e+02 Score=28.38 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=14.9
Q ss_pred ccccchh-HHHHHHHHHHHHHHhhhhhHhhc
Q 002711 473 VKGTEGW-TGVVMVVLMAISYTLAQPWFRRN 502 (889)
Q Consensus 473 ~~~~~g~-tG~i~lv~~~i~~~~s~~~~Rr~ 502 (889)
++++++- .|+++++ +.++....+|++-+.
T Consensus 280 LRsiPnKlgGvial~-~siliLflLP~i~~~ 309 (379)
T MTH00022 280 LRSIPNKLGGVVAMF-FSILILFFLPLLHTS 309 (379)
T ss_pred HHhhcchHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 4455543 3555554 344334457777554
No 262
>PLN02228 Phosphoinositide phospholipase C
Probab=20.84 E-value=2.3e+02 Score=34.22 Aligned_cols=68 Identities=15% Similarity=0.324 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhcCCCCceeeHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHhcCCC----CCCcccHHHHHHHHHhC
Q 002711 214 FDARLETFFDMVDKNLDGRITEEEVKEIIALSASANKLSKIQERVEEYAALIMEELDPH----NLGYIELYNLEMLLLQA 289 (889)
Q Consensus 214 ~ee~l~~aF~~~Dkd~dG~It~eEl~~vl~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d----~dG~Is~~EF~~~l~~~ 289 (889)
+.+++..+|..+-.+ +.+|.+||..+|.......... .+.+..++..+... ..|.++.+.|...|...
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAG------LDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCC------HHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 455667777766432 4677777777765321111000 23344566655432 34679999999988653
No 263
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=20.62 E-value=2.1e+02 Score=30.46 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=31.2
Q ss_pred ccCcccHHHHHHHHHcccC-CCccchhhhcccccCCC
Q 002711 139 NVGTEGWGEVEKRFDELAV-DGMLPKSSFGQCIGMNE 174 (889)
Q Consensus 139 ~~~~~~~~~l~~~F~~ld~-dG~Ls~~ef~~~lg~~~ 174 (889)
+++=.|++.++++|+.+++ ||+++..++++-+|...
T Consensus 176 tLSySEleAv~~IL~~L~~~egrlse~eLAerlGVSR 212 (251)
T TIGR02787 176 TLSYSELEAVEHIFEELDGNEGLLVASKIADRVGITR 212 (251)
T ss_pred hccHhHHHHHHHHHHHhccccccccHHHHHHHHCCCH
Confidence 3555789999999999995 79999999999999853
No 264
>MTH00016 CYTB cytochrome b; Validated
Probab=20.45 E-value=7.8e+02 Score=28.19 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=14.8
Q ss_pred ccccchhH-HHHHHHHHHHHHHhhhhhHhhc
Q 002711 473 VKGTEGWT-GVVMVVLMAISYTLAQPWFRRN 502 (889)
Q Consensus 473 ~~~~~g~t-G~i~lv~~~i~~~~s~~~~Rr~ 502 (889)
++++++-. |+++++ +.++....+|++-+.
T Consensus 282 LRsiPnKlgGvial~-~siliL~lLP~l~~s 311 (378)
T MTH00016 282 LRSIPNKLGGVVAMF-ASILILFFLPFIFKQ 311 (378)
T ss_pred hhcccchhHHHHHHH-HHHHHHHHHHHHhhc
Confidence 45555544 555544 344334447766543
No 265
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=20.15 E-value=1.5e+02 Score=24.82 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.7
Q ss_pred HHhcCCCCceeeHHHHHHHHHh
Q 002711 223 DMVDKNLDGRITEEEVKEIIAL 244 (889)
Q Consensus 223 ~~~Dkd~dG~It~eEl~~vl~~ 244 (889)
++||...+.+||.++++++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4789999999999999999973
Done!