Query 002711
Match_columns 889
No_of_seqs 551 out of 4394
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 18:33:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002711.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1426-1430//hhsearch_pdb/002711hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fk8_A Ferredoxin--NADP reduct 1.0 1 1 231.2 16.3 244 557-889 6-268 (271)
2 4eh1_A Flavohemoprotein; struc 1.0 1 1 229.0 20.6 222 574-889 2-235 (243)
3 3jqq_A Ferredoxin NADP reducta 1.0 1 1 229.0 17.2 240 576-889 16-316 (316)
4 4g1v_A Flavohemoglobin; three 1.0 1 1 229.0 24.4 222 572-889 146-390 (399)
5 3lo8_A Ferredoxin--NADP reduct 1.0 1 1 225.8 18.3 224 575-877 28-288 (311)
6 3vo2_A Putative uncharacterize 1.0 1 1 223.5 20.6 224 576-877 34-287 (310)
7 1krh_A Benzoate 1,2-dioxygenas 1.0 1 1 219.8 17.7 224 574-889 107-335 (338)
8 1gvh_A Flavohemoprotein; oxido 1.0 1 1 218.9 20.4 233 574-889 151-390 (396)
9 1tvc_A Methane monooxygenase c 1.0 1 1 218.3 19.5 227 574-889 9-244 (250)
10 1cqx_A Flavohemoprotein; globi 1.0 1 1 217.6 23.1 232 574-889 153-396 (403)
No 1
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=1.00 E-value=1 Score=231.22 Aligned_cols=244 Identities=16% Similarity=0.213 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCEE
Q ss_conf 53456867889999755120179999999559999999965899743786389999767799742260631069999169
Q 002711 557 VPVLLYACERLIRAFRSGYKSVRILKVAVYPGNVLALQMSKPQGFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLS 636 (889)
Q Consensus 557 ~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~L~~~~p~~~~~~pGQyv~l~~p~is~~e~HPFSIaS~p~~~~ls 636 (889)
.|+..|+.+. ...+..++|++++.+++++.++++..|..+.|+||||++|.+|..+..++|||||+|+|.++.+.
T Consensus 6 ~~~~~~~~~~-----~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~ 80 (271)
T 4fk8_A 6 GPLYAPVSES-----MSKFDTATVLSVHHWTDTLFSFTCTRDQALRFNNGEFTMVGLEVDGKPLTRAYSIVSPNYEEHLE 80 (271)
T ss_dssp -----------------CEEEEEEEEEEEEETTEEEEEECCCTTCCCCTTCEEEEEEEETTEEEEEEEECCSCTTSSSEE
T ss_pred CCCCCCCCCC-----CCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCEE
T ss_conf 4331536645-----01353689999998589979999976998885999879998367996134447426789998689
Q ss_pred EEEEEC--CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCCCCCCCCC-CCCCEEEEEECCCCH
Q ss_conf 999855--851278999986306999988766300002568999985579995-9779998998-899889999937556
Q 002711 637 IHIRTL--GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLID-GPYGAPAQDY-KDYDVLLLVGLGIGA 712 (889)
Q Consensus 637 l~Ir~~--G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~Id-GPyG~~~~~~-~~y~~vllVagGiGI 712 (889)
++|+.. |.+|+.|.+ +++|+ .+.+. ||||.+..+. ..++.++|||||+||
T Consensus 81 ~~v~~~~~G~~s~~l~~--------------------l~~Gd------~v~v~~gP~G~~~~~~~~~~~~~vliagG~Gi 134 (271)
T 4fk8_A 81 FFSIKVQNGPLTSRLQH--------------------LKVGD------PVLIGKKPTGTLVADNLLPGKTLWMLSTGTGL 134 (271)
T ss_dssp EEEECCTTCTTHHHHTT--------------------CCTTC------EEEEESCCBCSCCGGGBCCCSEEEEEECGGGG
T ss_pred EEEEEECCCCHHHHHHC--------------------CCCCC------EEEEECCCCCCEECCCCCCCCEEEEEECCEEH
T ss_conf 99999789851268860--------------------89989------99994187763366776788709999877889
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC------CC
Q ss_conf 659999999999886311000244457988768999998620599999938887165799999999844599------81
Q 002711 713 TPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQD------GV 786 (889)
Q Consensus 713 TP~lsiL~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~wf~~~l~el~~~~~~------~~ 786 (889)
||++|+++++.... ..++++++|++|+.+++ .|.+++.++.+.... ..
T Consensus 135 tP~~~~l~~l~~~~-------------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~~~~~~~~~~~ 188 (271)
T 4fk8_A 135 APFMSIIRDPDIYE-------------------------RFDKVVLTHTCRLKGEL-AYMDYIKHDLPGHEYLGDVIREK 188 (271)
T ss_dssp HHHHHHTTCHHHHH-------------------------HCSEEEEEECCCSHHHH-HHHHHHHTCCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-------------------------CCCCEEEEEECCCHHHH-HHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 99999999888517-------------------------79978999966988997-68999999997584421135540
Q ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHH-----CCCCEEEEEEECC
Q ss_conf 99999650445678724689998774310138876445883212047999889999-99854-----7999199999097
Q 002711 787 IELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFK-HVAVK-----HTDERVGVFYCGA 860 (889)
Q Consensus 787 i~i~~y~T~~~~~~d~~~~~~~m~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~-~~~~~-----~~~~~v~V~~CGP 860 (889)
++++..+++... .+.||++- .+.+ .+... ...+...||+|||
T Consensus 189 ~~~~~~~s~~~~-------------------------------~~~G~v~~-~~~~~~l~~~~~~~~~~~~~~~v~vCGp 236 (271)
T 4fk8_A 189 LVYYPTVTREEF-------------------------------ENEGRITD-LIASGKLFTDLDMPPFSPEQDRVMLCGS 236 (271)
T ss_dssp EEEEECC--------------------------------------CCHHHH-HHHHSHHHHHTTCCCCCTTTEEEEEEEC
T ss_pred EEEEEEECCCCC-------------------------------CCCCCCCH-HHHCCHHHHHCCCCCCCCCCCEEEEECC
T ss_conf 899998568865-------------------------------66632486-7865635553144567877878999799
Q ss_pred HHHHHHHHHHHHHHHCCCC---CCEEEEEECC
Q ss_conf 2689999999984201798---7099995079
Q 002711 861 PGLTGELRRLSQDFSRKTT---TKFDFHKENF 889 (889)
Q Consensus 861 ~~l~~~vr~~~~~~~~~~~---~~~~fh~E~F 889 (889)
++|++++++.+.+.+.+.. ..-.++.|.|
T Consensus 237 ~~m~~~v~~~l~~~gv~~~~i~~~~~~~~E~y 268 (271)
T 4fk8_A 237 TAMLKDTTELLKKAGLVEGKNSAPGHYVIERA 268 (271)
T ss_dssp HHHHHHHHHHHHHTTCCBCBTTBCBSEEEEES
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEE
T ss_conf 99999999999985996011589986899986
No 2
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=1.00 E-value=1 Score=229.01 Aligned_cols=222 Identities=14% Similarity=0.195 Sum_probs=171.1
Q ss_pred CCCCEEEEEEEEECCCEEEEEEECCCC---CCCCCCCEEEEEECCCCC--CCCCCEEEEECCCCCCEEEEEEEC------
Q ss_conf 120179999999559999999965899---743786389999767799--742260631069999169999855------
Q 002711 574 GYKSVRILKVAVYPGNVLALQMSKPQG---FKYTSGQYIFVNCAAVSQ--FQWHPFSITSAPGDDYLSIHIRTL------ 642 (889)
Q Consensus 574 ~~~~~~i~~v~~~~~~v~~L~~~~p~~---~~~~pGQyv~l~~p~is~--~e~HPFSIaS~p~~~~lsl~Ir~~------ 642 (889)
.|+.++|.+++.+++++.++++..|.+ +.|+||||++|.+|..+. .++|||||+|+|.++.+.++||..
T Consensus 2 ~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~~~~~~i~vk~~~~~~~~ 81 (243)
T 4eh1_A 2 DGRTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVTPEGSDYREIRQYSLSHASNGREYRISVKREGVGSDN 81 (243)
T ss_dssp CCEEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEEEECCSSCSSCEEEEEEBCSCCCSSCEEEEEECTTTTSSS
T ss_pred CCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCEEEEEEEEEECCCCC
T ss_conf 86788999999759982999999389875788699987999986699864332334845589998499999996068799
Q ss_pred -CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf -8512789999863069999887663000025689999855799959779998998899889999937556659999999
Q 002711 643 -GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKD 721 (889)
Q Consensus 643 -G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~IdGPyG~~~~~~~~y~~vllVagGiGITP~lsiL~~ 721 (889)
|.+|+.|.+.+ ++|+ ++.|.||||.+..+ ..++.++|||||+||||+++++++
T Consensus 82 ~G~~S~~l~~~l-------------------~~G~------~v~v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~ 135 (243)
T 4eh1_A 82 PGLVSHYLHNNV-------------------KVGD------SVKLYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHT 135 (243)
T ss_dssp CCHHHHHHHHHC-------------------CTTC------EEEEEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHH
T ss_pred CCEEHHHHHHCC-------------------CCCC------EEEEECCCCCCCCC-CCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 976655787338-------------------9999------99997267655768-999878999754508999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
Q ss_conf 99988631100024445798876899999862059999993888716579999999984459981999996504456787
Q 002711 722 VLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGD 801 (889)
Q Consensus 722 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~wf~~~l~el~~~~~~~~i~i~~y~T~~~~~~d 801 (889)
+..+. ..+ ++++|++|+.+++ +|.+++.++.+.. .++++.++++..+.+.
T Consensus 136 l~~~~-------------------------~~~-v~l~~~~r~~~~~-~~~~el~~l~~~~---~~~~~~~~s~~~~~~~ 185 (243)
T 4eh1_A 136 LAKQN-------------------------KSG-VTYLYACNSAKEH-TFAQETAQLIAQQ---GWMQQVWYRDESADDV 185 (243)
T ss_dssp HHHTT-------------------------CCS-EEEEEEESSGGGC-TTHHHHHHHHHHH---TCEEEEEESSCCCTTC
T ss_pred HHHCC-------------------------CCE-EEEEEEECCHHHH-HHHHHHHHHHHHC---CEEEEEEECCCCCCCC
T ss_conf 99748-------------------------980-9999980775465-6899999999757---9089999866887664
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 24689998774310138876445883212047999889999998547999199999097268999999998420179870
Q 002711 802 ARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTK 881 (889)
Q Consensus 802 ~~~~~~~m~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~ 881 (889)
+.||++...+ ..+.....||+|||+.|++++++.+.+.+.. .
T Consensus 186 -----------------------------~~g~~~~~~~------~~~~~~~~vyvCGp~~m~~~v~~~l~~~g~~---~ 227 (243)
T 4eh1_A 186 -----------------------------LQGEMQLAEL------ILPIEDGDFYLCGPIGFMQYVVKQLLALGVD---K 227 (243)
T ss_dssp -----------------------------EESSCCCTTS------CCCTTTCEEEEEECHHHHHHHHHHHHHHTCC---G
T ss_pred -----------------------------CCCCCCHHHE------ECCCCCCEEEEECCHHHHHHHHHHHHHCCCC---H
T ss_conf -----------------------------4687448995------4268983899989899999999999985998---8
Q ss_pred EEEEEECC
Q ss_conf 99995079
Q 002711 882 FDFHKENF 889 (889)
Q Consensus 882 ~~fh~E~F 889 (889)
-.+|.|.|
T Consensus 228 ~~i~~E~F 235 (243)
T 4eh1_A 228 ARIHYEVF 235 (243)
T ss_dssp GGEEEEEC
T ss_pred HHEEEECC
T ss_conf 99798514
No 3
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=1.00 E-value=1 Score=228.99 Aligned_cols=240 Identities=15% Similarity=0.190 Sum_probs=168.8
Q ss_pred CCEEEEEEEEEC-----CCEEEEEEECCCCCCCCCCCEEEEEECCCC---------------------------------
Q ss_conf 017999999955-----999999996589974378638999976779---------------------------------
Q 002711 576 KSVRILKVAVYP-----GNVLALQMSKPQGFKYTSGQYIFVNCAAVS--------------------------------- 617 (889)
Q Consensus 576 ~~~~i~~v~~~~-----~~v~~L~~~~p~~~~~~pGQyv~l~~p~is--------------------------------- 617 (889)
...+|+.++.+. ++|.+|.+..+..|+|+||||+.|.+|..+
T Consensus 16 ~~~~v~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 95 (316)
T 3jqq_A 16 LKCKIVDKINLVRPNSPNEVYHLEINHNGLFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNNIALSHIK 95 (316)
T ss_dssp EEEEEEEEEECSCTTCSCCEEEEEEECTTCCCCCTTCEEEECTTCC----------------------------------
T ss_pred EEEEEEEEEECCCCCCCCCEEEEEEECCCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79999713773479999856899995899765445868578899865010113443222222223222222211234579
Q ss_pred -CCCCCCEEEEECCCCCCEEEEEEEC--------------CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -9742260631069999169999855--------------8512789999863069999887663000025689999855
Q 002711 618 -QFQWHPFSITSAPGDDYLSIHIRTL--------------GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIP 682 (889)
Q Consensus 618 -~~e~HPFSIaS~p~~~~lsl~Ir~~--------------G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~ 682 (889)
..++|||||+|+|.++.++++||.. |.+|+.|.+ +++|+
T Consensus 96 g~~~~R~ySIaS~p~~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~--------------------l~~Gd------ 149 (316)
T 3jqq_A 96 KQRCARLYSISSSNNMENLSVAIKIHKYEQTENAPNITNYGYCSGFIKN--------------------LKIND------ 149 (316)
T ss_dssp -CCCCEEEEBCSCTTSSSEEEEEECCBC---------CCBCHHHHHHHT--------------------CCTTC------
T ss_pred CCCCCEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHH--------------------CCCCC------
T ss_conf 9643145432668999858999999871256666675889845578861--------------------89979------
Q ss_pred EEEEECCCCCCCCCCC---CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 7999597799989988---9988999993755665999999999988631100024445798876899999862059999
Q 002711 683 KLLIDGPYGAPAQDYK---DYDVLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFY 759 (889)
Q Consensus 683 ~v~IdGPyG~~~~~~~---~y~~vllVagGiGITP~lsiL~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~li 759 (889)
++.|+||||.+..+.. ..+.+||||||+||||++|+|+++........ ........++++|+
T Consensus 150 ~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~---------------~~~~~~~~~~v~L~ 214 (316)
T 3jqq_A 150 DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNL---------------YNRNSNYTGYITIY 214 (316)
T ss_dssp EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGT---------------TCCCCCCCCCEEEE
T ss_pred EEEEEECCCCEECCCCCCCCCCCEEEEECCCEECHHHHHHHHHHHHCCCCC---------------CCCCCCCCCCEEEE
T ss_conf 899993577137587566778868999679540368999999997311333---------------22345788868999
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99388871657999999998445998199999650445678724689998774310138876445883212047999889
Q 002711 760 WVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRT 839 (889)
Q Consensus 760 W~~R~~~~~~wf~~~l~el~~~~~~~~i~i~~y~T~~~~~~d~~~~~~~m~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~ 839 (889)
|++|+.+++ ||.++|.++.+... +.++++.++|+..... |. +..+..
T Consensus 215 ~g~R~~~d~-~~~~eL~~l~~~~~-~~~~~~~~~s~~~~~~------------------------g~-------~g~V~~ 261 (316)
T 3jqq_A 215 YGVYNEDSI-LYLNELEYFQKMYP-NNINIHYVFSYKQNSD------------------------AT-------SFYVQD 261 (316)
T ss_dssp EEESSGGGC-TTHHHHHHHHHHCT-TTEEEEEEEGGGCC---------------------------C-------BCCHHH
T ss_pred EEECCHHHH-HCHHHHHHHHHHCC-CCEEEEEEECCCCCCC------------------------CC-------CCCHHH
T ss_conf 984587882-15999999997488-9689999987775667------------------------87-------433127
Q ss_pred HHHH----HHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCC-CCCEEEEEECC
Q ss_conf 9999----98547999199999097268999999998420179-87099995079
Q 002711 840 VFKH----VAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKT-TTKFDFHKENF 889 (889)
Q Consensus 840 v~~~----~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~-~~~~~fh~E~F 889 (889)
.+.+ +...-......||+|||++|++.+++.+.+.+.-+ ...-.+|.|.|
T Consensus 262 ~l~~~~~~~~~~l~~~~~~vyvCGP~~m~~~v~~~l~~~G~~~~v~~~rih~E~f 316 (316)
T 3jqq_A 262 EIYKRKTEFLNLFNNYKCELYICGKKSIRYKVMDILKSHDQFDEKKKKRVHVEVY 316 (316)
T ss_dssp HHHHTHHHHHHHHHHTCCEEEEEECSTHHHHHHHHHHC----CHHHHTTEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 9998678898762269818999698899999999999748976665534799829
No 4
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=1.00 E-value=1 Score=228.95 Aligned_cols=222 Identities=18% Similarity=0.266 Sum_probs=171.6
Q ss_pred HHCCCCEEEEEEEEECCCEEEEEEECCCC--C-----CCCCCCEEEEEEC----CCCCCCCCCEEEEECCCCCCEEEEEE
Q ss_conf 55120179999999559999999965899--7-----4378638999976----77997422606310699991699998
Q 002711 572 RSGYKSVRILKVAVYPGNVLALQMSKPQG--F-----KYTSGQYIFVNCA----AVSQFQWHPFSITSAPGDDYLSIHIR 640 (889)
Q Consensus 572 r~~~~~~~i~~v~~~~~~v~~L~~~~p~~--~-----~~~pGQyv~l~~p----~is~~e~HPFSIaS~p~~~~lsl~Ir 640 (889)
...|+.++|++++.+++++.++++..|.+ + .|+||||+.|+++ +....++|||||+|+|.++++.++||
T Consensus 146 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~~~~~~i~Vk 225 (399)
T 4g1v_A 146 WPGWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSASTKNGLRFAVK 225 (399)
T ss_dssp SCSCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEE
T ss_conf 77614789999887379859999992899847767888899987899996799888652221001357899985999999
Q ss_pred E--------CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC----CCCEEEEEEC
Q ss_conf 5--------585127899998630699998876630000256899998557999597799989988----9988999993
Q 002711 641 T--------LGDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYK----DYDVLLLVGL 708 (889)
Q Consensus 641 ~--------~G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~IdGPyG~~~~~~~----~y~~vllVag 708 (889)
. .|.+|+.|.+ .+++|+ ++.+.||||.+..+.. .++.++||||
T Consensus 226 ~~~~~~~~~~G~~S~~L~~-------------------~l~~Gd------~v~v~gP~G~f~l~~~~~~~~~~~~vlIag 280 (399)
T 4g1v_A 226 MEAARENFPAGLVSEYLHK-------------------DAKVGD------EIKLSAPAGDFAINKELIHQNEVPLVLLSS 280 (399)
T ss_dssp CCCCBTTBCCCHHHHHHHH-------------------TCCTTC------EEEEEEEECSCCCCTTTTTCSSSCEEEEEE
T ss_pred ECCCCCCCCCCEEHHHHHH-------------------CCCCCC------EEEEEECCCCEEECCCCCCCCCCCEEEEEC
T ss_conf 6147888999876167871-------------------789999------899983245406376445578998899955
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 75566599999999998863110002444579887689999986205999999388871657999999998445998199
Q 002711 709 GIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIE 788 (889)
Q Consensus 709 GiGITP~lsiL~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~wf~~~l~el~~~~~~~~i~ 788 (889)
|+||||++|+++++..+. ..++++++|++|+.+++ +|.++++++.+.. ..++
T Consensus 281 G~GitP~~s~l~~l~~~~-------------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~ 332 (399)
T 4g1v_A 281 GVGVTPLLAMLEEQVKCN-------------------------PNRPIYWIQSSYDEKTQ-AFKKHVDELLAEC--ANVD 332 (399)
T ss_dssp GGGHHHHHHHHHHHHHHC-------------------------TTSCEEEEEEESSSTTS-TTHHHHHHHHTTC--SSEE
T ss_pred CEEHHHHHHHHHHHHHCC-------------------------CCCCEEEEEECCCHHHH-HHHHHHHHHHHHC--CCCE
T ss_conf 430858999999999719-------------------------99978999966987873-6699999999748--9918
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH
Q ss_conf 99965044567872468999877431013887644588321204799988999999854799919999909726899999
Q 002711 789 LHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELR 868 (889)
Q Consensus 789 i~~y~T~~~~~~d~~~~~~~m~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr 868 (889)
++.++++. .||++...+.+. .+. ...||+|||++|+++++
T Consensus 333 ~~~~~s~~-----------------------------------~g~~~~~~l~~~----~~~-~~~vyvCGp~~m~~~v~ 372 (399)
T 4g1v_A 333 KIIVHTDT-----------------------------------EPLINAAFLKEK----SPA-HADVYTCGSLAFMQAMI 372 (399)
T ss_dssp EEEEETTT-----------------------------------SCCCCHHHHHHH----SCS-SCEEEEEECHHHHHHHH
T ss_pred EEEEEECC-----------------------------------CCCCCHHHHHHH----CCC-CCEEEEECCHHHHHHHH
T ss_conf 99999679-----------------------------------885249999854----889-98899989999999999
Q ss_pred HHHHHHHCCCCCCEEEEEECC
Q ss_conf 999842017987099995079
Q 002711 869 RLSQDFSRKTTTKFDFHKENF 889 (889)
Q Consensus 869 ~~~~~~~~~~~~~~~fh~E~F 889 (889)
+.+.+.+.. .-.+|.|.|
T Consensus 373 ~~L~~~Gv~---~~~i~~E~F 390 (399)
T 4g1v_A 373 GHLKELEHR---DDMIHYEPF 390 (399)
T ss_dssp HHHHHTTCC---GGGEEEEES
T ss_pred HHHHHCCCC---HHHEEEECC
T ss_conf 999986998---999664045
No 5
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=1.00 E-value=1 Score=225.81 Aligned_cols=224 Identities=13% Similarity=0.142 Sum_probs=164.9
Q ss_pred CCCEEEEEEEEEC-----CCEEEEEEECCCCCCCCCCCEEEEEECCCC------CCCCCCEEEEECCCC-----CCEEEE
Q ss_conf 2017999999955-----999999996589974378638999976779------974226063106999-----916999
Q 002711 575 YKSVRILKVAVYP-----GNVLALQMSKPQGFKYTSGQYIFVNCAAVS------QFQWHPFSITSAPGD-----DYLSIH 638 (889)
Q Consensus 575 ~~~~~i~~v~~~~-----~~v~~L~~~~p~~~~~~pGQyv~l~~p~is------~~e~HPFSIaS~p~~-----~~lsl~ 638 (889)
...++|++++.++ +++.++++..|..+.|+||||++|.+|..+ ++++|||||+|+|.+ +.++++
T Consensus 28 ~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~ 107 (311)
T 3lo8_A 28 PFTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLC 107 (311)
T ss_dssp CEEEEEEEEEECSCTTSSSCEEEEEEECTTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEE
T ss_pred CEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEE
T ss_conf 71789996374368778786189998079987644898889968887645579888855567457876657899889999
Q ss_pred EEEC---------------CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC--CCCC
Q ss_conf 9855---------------8512789999863069999887663000025689999855799959779998998--8998
Q 002711 639 IRTL---------------GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDY--KDYD 701 (889)
Q Consensus 639 Ir~~---------------G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~IdGPyG~~~~~~--~~y~ 701 (889)
||.. |.+|+.|.+ +++|+ ++.|.||||.+.... ..++
T Consensus 108 Vk~~~~~~~~~~~~~~~~~G~~S~~L~~--------------------l~~Gd------~v~v~gP~G~~~~~~~~~~~~ 161 (311)
T 3lo8_A 108 VRRAVYYDPETGKEDPSKNGVCSNFLCN--------------------SKPGD------KIQLTGPSGKIMLLPEEDPNA 161 (311)
T ss_dssp EECCCCCCTTTCCCCGGGSCHHHHHHHT--------------------CCTTC------EEEEEEEECCTTCCCCSCTTC
T ss_pred EEEEEECCCCCCCCCCCCCCCHHHHHHC--------------------CCCCC------EEEEEECCCCCCCCCCCCCCC
T ss_conf 9997752456676776889704458863--------------------99949------899983468841288768999
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 89999937556659999999999886311000244457988768999998620599999938887165799999999844
Q 002711 702 VLLLVGLGIGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEY 781 (889)
Q Consensus 702 ~vllVagGiGITP~lsiL~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~wf~~~l~el~~~ 781 (889)
.++|||||+||||++|++++++.+.... ....++++|+|++|+.+++ +|.++|.++.+.
T Consensus 162 ~~vlIagGtGIaP~~s~l~~~~~~~~~~--------------------~~~~~~v~l~~g~r~~~d~-~~~~el~~l~~~ 220 (311)
T 3lo8_A 162 THIMIATGTGVAPFRGYLRRMFMEDVPN--------------------YRFGGLAWLFLGVANSDSL-LYDEEFTSYLKQ 220 (311)
T ss_dssp EEEEEEEGGGGHHHHHHHHHHHTEECTT--------------------CCCCSEEEEEEEESSGGGC-SSHHHHHHHHHH
T ss_pred CEEEEECCEEHHHHHHHHHHHHHHCCCC--------------------CCCCCCEEEEEECCCHHHH-HHHHHHHHHHHH
T ss_conf 8899988878999999999999733665--------------------5677878999964774775-699999999982
Q ss_pred CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH----HHCCCCEEEEEE
Q ss_conf 5998199999650445678724689998774310138876445883212047999889999998----547999199999
Q 002711 782 DQDGVIELHNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVA----VKHTDERVGVFY 857 (889)
Q Consensus 782 ~~~~~i~i~~y~T~~~~~~d~~~~~~~m~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~----~~~~~~~v~V~~ 857 (889)
.. ..++++.++++..+.. ..++..+...+.+.. ... .....||+
T Consensus 221 ~~-~~~~~~~~~s~~~~~~------------------------------~g~~~~v~~~l~~~~~~~~~~~-~~~~~vyv 268 (311)
T 3lo8_A 221 YP-DNFRYDKALSREQKNR------------------------------SGGKMYVQDKIEEYSDEIFKLL-DGGAHIYF 268 (311)
T ss_dssp CT-TTEEEEEEETTTC-------------------------------------CCHHHHHHHTHHHHHHHH-HTTCEEEE
T ss_pred CC-CCEEEEEEECCCCCCC------------------------------CCCCCEEHHHHHHHHHHHHHHH-CCCCEEEE
T ss_conf 98-8689999989887666------------------------------7885221689998799999753-48958999
Q ss_pred ECCHHHHHHHHHHHHHHHCC
Q ss_conf 09726899999999842017
Q 002711 858 CGAPGLTGELRRLSQDFSRK 877 (889)
Q Consensus 858 CGP~~l~~~vr~~~~~~~~~ 877 (889)
|||++|++++++.+.+...+
T Consensus 269 CGp~~m~~~v~~~L~~~~~~ 288 (311)
T 3lo8_A 269 CGLKGMMPGIQDTLKKVAER 288 (311)
T ss_dssp EECGGGHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHHHH
T ss_conf 89988999999999999986
No 6
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=1.00 E-value=1 Score=223.52 Aligned_cols=224 Identities=15% Similarity=0.233 Sum_probs=163.9
Q ss_pred CCEEEEEEEEECCC-----EEEEEEECCCCCCCCCCCEEEEEECCCC----CCCCCCEEEEECCC-----CCCEEEEEEE
Q ss_conf 01799999995599-----9999996589974378638999976779----97422606310699-----9916999985
Q 002711 576 KSVRILKVAVYPGN-----VLALQMSKPQGFKYTSGQYIFVNCAAVS----QFQWHPFSITSAPG-----DDYLSIHIRT 641 (889)
Q Consensus 576 ~~~~i~~v~~~~~~-----v~~L~~~~p~~~~~~pGQyv~l~~p~is----~~e~HPFSIaS~p~-----~~~lsl~Ir~ 641 (889)
+.++|+.++.+.++ +.++++..+..+.|+||||++|.+|... ++++|||||+|+|. ++.++++||.
T Consensus 34 ~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~ 113 (310)
T 3vo2_A 34 YVGRCLSNTRITGDDAPGETWHMVFSTEGEIPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKR 113 (310)
T ss_dssp EEEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEEC
T ss_pred EEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEE
T ss_conf 89999978981588997628999995799876668878999798758899737643103587875647899989999999
Q ss_pred C-----------CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCEEEEEECC
Q ss_conf 5-----------85127899998630699998876630000256899998557999597799989-98899889999937
Q 002711 642 L-----------GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQ-DYKDYDVLLLVGLG 709 (889)
Q Consensus 642 ~-----------G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~IdGPyG~~~~-~~~~y~~vllVagG 709 (889)
. |.+|+.|.+ +++|+ .+.|.||||.+.. +...++.++|||||
T Consensus 114 ~~~~~~~~~~~~G~~S~~L~~--------------------l~~Gd------~v~v~gP~G~~~~~~~~~~~~~vlIagG 167 (310)
T 3vo2_A 114 LVYTNDQGEIVKGVCSNFLCD--------------------LKPGA------DVKITGPVGKEMLMPKDPNATVIMLATG 167 (310)
T ss_dssp CEEECTTSCEEECHHHHHHHT--------------------CCTTC------EEEEEEEECSTTCCBSCTTCEEEEEEEG
T ss_pred EEECCCCCCCCCCCHHHHHHC--------------------CCCCC------EEEEEECCCCCCCCCCCCCCCEEEEECC
T ss_conf 874368887578500457861--------------------89979------8999933587422787889878999589
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 55665999999999988631100024445798876899999862059999993888716579999999984459981999
Q 002711 710 IGATPLISIIKDVLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIEL 789 (889)
Q Consensus 710 iGITP~lsiL~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~wf~~~l~el~~~~~~~~i~i 789 (889)
+||||++|++++++..... .....++++|+|++|+.+++ +|.++|.++.+... ..+++
T Consensus 168 tGIaP~~s~l~~~~~~~~~--------------------~~~~~~~v~L~~g~r~~~d~-~~~~el~~l~~~~~-~~~~v 225 (310)
T 3vo2_A 168 TGIAPFRSFLWKMFLEEHE--------------------DYKFSGLAWLFLGVPTSDSL-LYKEELEKMKEMAP-DNFRL 225 (310)
T ss_dssp GGGHHHHHHHHHHHSSCCT--------------------TCCCCSEEEEEEEESSGGGC-CSHHHHHHHHHHCT-TTEEE
T ss_pred CCHHHHHHHHHHHHHHHCC--------------------CCCCCCCEEEEEEECCHHHC-CCHHHHHHHHHHCC-CCEEE
T ss_conf 4156899999999985255--------------------45677868999980674645-13999999998499-97899
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH----HHHHCCCCEEEEEEECCHHHHH
Q ss_conf 996504456787246899987743101388764458832120479998899999----9854799919999909726899
Q 002711 790 HNYCTSVYEEGDARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKH----VAVKHTDERVGVFYCGAPGLTG 865 (889)
Q Consensus 790 ~~y~T~~~~~~d~~~~~~~m~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~----~~~~~~~~~v~V~~CGP~~l~~ 865 (889)
+.++|+..+.. .| ++..+...+.+ +..........||+|||++|++
T Consensus 226 ~~~~sr~~~~~-----------------------~g-------~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp~~M~~ 275 (310)
T 3vo2_A 226 DFAVSREQTNA-----------------------AG-------EKMYIQTRMAEYREELWELLKKDNTYVYMCGLKGMEK 275 (310)
T ss_dssp EEEETTTCBCT-----------------------TC-------CBCCHHHHHHTTHHHHHHHHTSTTEEEEEEESTTHHH
T ss_pred EEEECCCCCCC-----------------------CC-------CCEEHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHH
T ss_conf 99988788777-----------------------88-------6034488999999999975046995899969889999
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999842017
Q 002711 866 ELRRLSQDFSRK 877 (889)
Q Consensus 866 ~vr~~~~~~~~~ 877 (889)
++++.+.+...+
T Consensus 276 ~v~~~L~~~~~~ 287 (310)
T 3vo2_A 276 GIDDIMLNLAAK 287 (310)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999987
No 7
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=1.00 E-value=1 Score=219.85 Aligned_cols=224 Identities=14% Similarity=0.217 Sum_probs=167.5
Q ss_pred CCCCEEEEEEEEECCCEEEEEEECCC---CCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCEEEEEEEC--CCCHHH
Q ss_conf 12017999999955999999996589---9743786389999767799742260631069999169999855--851278
Q 002711 574 GYKSVRILKVAVYPGNVLALQMSKPQ---GFKYTSGQYIFVNCAAVSQFQWHPFSITSAPGDDYLSIHIRTL--GDWTSQ 648 (889)
Q Consensus 574 ~~~~~~i~~v~~~~~~v~~L~~~~p~---~~~~~pGQyv~l~~p~is~~e~HPFSIaS~p~~~~lsl~Ir~~--G~wT~~ 648 (889)
....++|.+++.+++++.++++..|. .+.|+||||++|.+|.. .++|||||+|.|.++.++++||.. |.+|+.
T Consensus 107 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~~~~l~~~vk~~~~G~~S~~ 184 (338)
T 1krh_A 107 HHFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGT--TETRSYSFSSQPGNRLTGFVVRNVPQGKMSEY 184 (338)
T ss_dssp EEEEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTTS--SCEEEEECCSCTTCSEEEEEEECCTTCHHHHH
T ss_pred EEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCC--CCCCCCCCCCCCCCCEEEEEEEECCCCCCHHH
T ss_conf 3898999999975898799999938987777739998699984998--86400052679999969999998589875146
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99998630699998876630000256899998557999597799989988998899999375566599999999998863
Q 002711 649 LKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNIKQ 728 (889)
Q Consensus 649 L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~IdGPyG~~~~~~~~y~~vllVagGiGITP~lsiL~~ll~~~~~ 728 (889)
|.+.+ ++|+ .+.|.||||.+..+.. .+.++|||||+||||++|+++++..+.
T Consensus 185 L~~~l-------------------~~Gd------~v~v~gP~G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~~-- 236 (338)
T 1krh_A 185 LSVQA-------------------KAGD------KMSFTGPFGSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQKG-- 236 (338)
T ss_dssp HHTTC-------------------CTTC------EEEEEEEECSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHHC--
T ss_pred HHHCC-------------------CCCC------EEEEECCCCCEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHCC--
T ss_conf 76356-------------------8999------9999777343185789-961899972314758999999999719--
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHH
Q ss_conf 11000244457988768999998620599999938887165799999999844599819999965044567872468999
Q 002711 729 QKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSALIT 808 (889)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~wf~~~l~el~~~~~~~~i~i~~y~T~~~~~~d~~~~~~~ 808 (889)
..++++|+|++|+.+++ +|.+++.++.+.. ..++++.++++......
T Consensus 237 -----------------------~~~~v~l~~~~r~~~d~-~~~~el~~l~~~~--~~~~~~~~~s~~~~~~~------- 283 (338)
T 1krh_A 237 -----------------------SEHPVRLVFGVTQDCDL-VALEQLDALQQKL--PWFEYRTVVAHAESQHE------- 283 (338)
T ss_dssp -----------------------CSSCEEEEEEESSGGGC-CCHHHHHHHHHHC--TTEEEEEEETTCCSSSS-------
T ss_pred -----------------------CCCEEEEEEEECCHHHH-HHHHHHHHHHHHC--CCEEEEEEEECCCCCCC-------
T ss_conf -----------------------99729999995898995-1299999999868--99299999966888878-------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 87743101388764458832120479998899999985479991999990972689999999984201798709999507
Q 002711 809 MLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHKEN 888 (889)
Q Consensus 809 m~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh~E~ 888 (889)
+.|+.+ +.+....... ....||+|||++|++.+++.+.+.+.. .-.+|.|.
T Consensus 284 ----------------------~~g~v~-~~l~~~~~~~---~~~~vy~CGp~~m~~~v~~~l~~~G~~---~~~i~~e~ 334 (338)
T 1krh_A 284 ----------------------RKGYVT-GHIEYDWLNG---GEVDVYLCGPVPMVEAVRSWLDTQGIQ---PANFLFEK 334 (338)
T ss_dssp ----------------------EESCSG-GGCCGGGGGG---GCSEEEEEEEHHHHHHHHHHHHHHTCC---CSEEEEEE
T ss_pred ----------------------CCCCCC-HHHHHHHCCC---CCCEEEEECCHHHHHHHHHHHHHCCCC---HHHEEEEE
T ss_conf ----------------------467407-8998753366---785899979999999999999986998---89979985
Q ss_pred C
Q ss_conf 9
Q 002711 889 F 889 (889)
Q Consensus 889 F 889 (889)
|
T Consensus 335 F 335 (338)
T 1krh_A 335 F 335 (338)
T ss_dssp E
T ss_pred E
T ss_conf 1
No 8
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=1.00 E-value=1 Score=218.92 Aligned_cols=233 Identities=16% Similarity=0.247 Sum_probs=172.3
Q ss_pred CCCCEEEEEEEEECCCEEEEEEECCCC---CCCCCCCEEEEEECCCC--CCCCCCEEEEECCCCCCEEEEEEEC--CCCH
Q ss_conf 120179999999559999999965899---74378638999976779--9742260631069999169999855--8512
Q 002711 574 GYKSVRILKVAVYPGNVLALQMSKPQG---FKYTSGQYIFVNCAAVS--QFQWHPFSITSAPGDDYLSIHIRTL--GDWT 646 (889)
Q Consensus 574 ~~~~~~i~~v~~~~~~v~~L~~~~p~~---~~~~pGQyv~l~~p~is--~~e~HPFSIaS~p~~~~lsl~Ir~~--G~wT 646 (889)
.++.++|++++.+++++.++++..|.+ ..|+||||+.|.+|..+ ..++|||||+|+|.++.+.++||.. |.+|
T Consensus 151 ~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~~~~~~i~Vk~~~~G~~S 230 (396)
T 1gvh_A 151 GTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYRIAVKREEGGQVS 230 (396)
T ss_dssp SEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCCSSCEEEEEECCTTCHHH
T ss_pred CCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCEECCCCCCCEEEEEEEECCCCCCH
T ss_conf 74788999999758985999999689980787899982799956898765121021425689998699999986898630
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 78999986306999988766300002568999985579995977999899889988999993755665999999999988
Q 002711 647 SQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLNNI 726 (889)
Q Consensus 647 ~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~IdGPyG~~~~~~~~y~~vllVagGiGITP~lsiL~~ll~~~ 726 (889)
+.|.+.. ++|+ .+.+.||||.+..+....+.++|||||+||||++|+++++....
T Consensus 231 ~~L~~~l-------------------~~Gd------~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~ 285 (396)
T 1gvh_A 231 NWLHNHA-------------------NVGD------VVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAG 285 (396)
T ss_dssp HHHHHTC-------------------CTTC------EEEEEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHCC-------------------CCCC------EEEEECCCCCEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 7887267-------------------9999------89997377432778899997899955603867899999999639
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHH
Q ss_conf 63110002444579887689999986205999999388871657999999998445998199999650445678724689
Q 002711 727 KQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARSAL 806 (889)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~wf~~~l~el~~~~~~~~i~i~~y~T~~~~~~d~~~~~ 806 (889)
..++++++|++|+.+++ +|.+++.++.... +.++++.++++..++ +..
T Consensus 286 -------------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~s~~~~~-~~~--- 333 (396)
T 1gvh_A 286 -------------------------HTAQVNWFHAAENGDVH-AFADEVKELGQSL--PRFTAHTWYRQPSEA-DRA--- 333 (396)
T ss_dssp -------------------------CCSCEEEEEEESCTTTC-CSHHHHHHHHHTS--SSEEEEEEESSCCHH-HHH---
T ss_pred -------------------------CCCCEEEEEEECCHHHH-HHHHHHHHHHHHC--CCEEEEEEECCCCCC-CCC---
T ss_conf -------------------------99848999985788970-4599999999878--992999997778843-344---
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 99877431013887644588321204799988999999854799919999909726899999999842017987099995
Q 002711 807 ITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDFHK 886 (889)
Q Consensus 807 ~~m~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh~ 886 (889)
+ ....+.||.+...+ .+.. ..+ ...||+|||++|++.+++.+.+.+.. .-.+|.
T Consensus 334 ------------~-------~~~~~~G~~~~~~l-~~~~-~~~--~~~vyvCGp~~m~~~v~~~L~~~Gv~---~~~i~~ 387 (396)
T 1gvh_A 334 ------------K-------GQFDSEGLMDLSKL-EGAF-SDP--TMQFYLCGPVGFMQFTAKQLVDLGVK---QENIHY 387 (396)
T ss_dssp ------------H-------TCCSEESSCCGGGS-SSCC-CCT--TCEEEEESCHHHHHHHHHHHHHTTCC---GGGEEE
T ss_pred ------------C-------CCCCCCCCCCHHHH-HHCC-CCC--CCEEEEECCHHHHHHHHHHHHHCCCC---HHHEEE
T ss_conf ------------6-------76673576779999-6436-799--98899949899999999999986998---899787
Q ss_pred ECC
Q ss_conf 079
Q 002711 887 ENF 889 (889)
Q Consensus 887 E~F 889 (889)
|.|
T Consensus 388 E~F 390 (396)
T 1gvh_A 388 ECF 390 (396)
T ss_dssp ECS
T ss_pred ECC
T ss_conf 523
No 9
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=1.00 E-value=1 Score=218.33 Aligned_cols=227 Identities=16% Similarity=0.295 Sum_probs=171.6
Q ss_pred CCCCEEEEEEEEECCCEEEEEEEC-C-C----CCCCCCCCEEEEEECCCCCCCCCCEEEEECCC-CCCEEEEEEEC--CC
Q ss_conf 120179999999559999999965-8-9----97437863899997677997422606310699-99169999855--85
Q 002711 574 GYKSVRILKVAVYPGNVLALQMSK-P-Q----GFKYTSGQYIFVNCAAVSQFQWHPFSITSAPG-DDYLSIHIRTL--GD 644 (889)
Q Consensus 574 ~~~~~~i~~v~~~~~~v~~L~~~~-p-~----~~~~~pGQyv~l~~p~is~~e~HPFSIaS~p~-~~~lsl~Ir~~--G~ 644 (889)
....++|.+++.+++++.++++.. | . .+.|+||||++|.+|.. .++|||||+|.|. ++.++++||.. |.
T Consensus 9 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~~~~~l~i~vk~~~~G~ 86 (250)
T 1tvc_A 9 GSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGT--DVSRSYSPANLPNPEGRLEFLIRVLPEGR 86 (250)
T ss_dssp SEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTSC--SSSEEECCBCCSSSSCCEEEEECCCTTSS
T ss_pred CEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCC--CCCCCCCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 2699999999986899699999945877766656838986799995898--65105412779989986999999889987
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 12789999863069999887663000025689999855799959779998998899889999937556659999999999
Q 002711 645 WTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKDVLN 724 (889)
Q Consensus 645 wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~IdGPyG~~~~~~~~y~~vllVagGiGITP~lsiL~~ll~ 724 (889)
+|+.|.+.+ ++|+ .+.|.||||.+..+...++.++|||||+||||++++++++..
T Consensus 87 ~s~~l~~~l-------------------~~Gd------~v~v~gP~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~ 141 (250)
T 1tvc_A 87 FSDYLRNDA-------------------RVGQ------VLSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQE 141 (250)
T ss_dssp SHHHHHHHS-------------------SSSS------EEEEEEEECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHH
T ss_pred CHHHHHHCC-------------------CCCC------EEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 358998418-------------------9999------999985862116276679659999723478799999999986
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHH
Q ss_conf 88631100024445798876899999862059999993888716579999999984459981999996504456787246
Q 002711 725 NIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGDARS 804 (889)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~wf~~~l~el~~~~~~~~i~i~~y~T~~~~~~d~~~ 804 (889)
+. ..++++++|++|+.+++ +|.+++.++.+.. ..++++.++|+..+ +
T Consensus 142 ~~-------------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~s~~~~-~---- 188 (250)
T 1tvc_A 142 WT-------------------------APNETRIYFGVNTEPEL-FYIDELKSLERSM--RNLTVKACVWHPSG-D---- 188 (250)
T ss_dssp HT-------------------------CCSCEEEEEECSSSTTC-CCHHHHHHHHHHS--SSCEEEECCSSCSS-C----
T ss_pred CC-------------------------CCCEEEEEEEECCHHHH-HHHHHHHHHHHHC--CCEEEEEEECCCCC-C----
T ss_conf 39-------------------------99669999971888994-4599999999868--98499999536887-7----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 89998774310138876445883212047999889999998547999199999097268999999998420179870999
Q 002711 805 ALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTKFDF 884 (889)
Q Consensus 805 ~~~~m~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~f 884 (889)
..| +.||.+ +.+.+.+ .... ....||+|||++|++.+++.+.+.+.. .-.+
T Consensus 189 ------------------~~g-----~~g~v~-~~l~~~~-~~~~-~~~~vyvCGp~~m~~~v~~~l~~~G~~---~~~i 239 (250)
T 1tvc_A 189 ------------------WEG-----EQGSPI-DALREDL-ESSD-ANPDIYLCGPPGMIDAACELVRSRGIP---GEQV 239 (250)
T ss_dssp ------------------CSS-----SSSSSS-HHHHHHH-HHSS-SSSEEEEESSHHHHHHHHHHHHHHCCC---CSEE
T ss_pred ------------------CCC-----CCCEEH-HHHHHHH-HCCC-CCCEEEEECCHHHHHHHHHHHHHCCCC---HHHE
T ss_conf ------------------688-----533305-9998651-1336-883899948989999999999985998---8988
Q ss_pred EEECC
Q ss_conf 95079
Q 002711 885 HKENF 889 (889)
Q Consensus 885 h~E~F 889 (889)
|.|.|
T Consensus 240 ~~e~F 244 (250)
T 1tvc_A 240 FFEKF 244 (250)
T ss_dssp EECCC
T ss_pred EEEEC
T ss_conf 99841
No 10
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=1.00 E-value=1 Score=217.64 Aligned_cols=232 Identities=18% Similarity=0.294 Sum_probs=171.5
Q ss_pred CCCCEEEEEEEEECCCEEEEEEECCCC---CCCCCCCEEEEEECC-CC-CCCCCCEEEEECCCCCCEEEEEEEC------
Q ss_conf 120179999999559999999965899---743786389999767-79-9742260631069999169999855------
Q 002711 574 GYKSVRILKVAVYPGNVLALQMSKPQG---FKYTSGQYIFVNCAA-VS-QFQWHPFSITSAPGDDYLSIHIRTL------ 642 (889)
Q Consensus 574 ~~~~~~i~~v~~~~~~v~~L~~~~p~~---~~~~pGQyv~l~~p~-is-~~e~HPFSIaS~p~~~~lsl~Ir~~------ 642 (889)
.++.++|++++.+++++.++++..|.+ ..|+||||+.|.+|. .. ..++|||||+|+|.++.+.++||..
T Consensus 153 ~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~~~~~~i~Vk~~~~~~~~ 232 (403)
T 1cqx_A 153 GWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRTYRISVKREGGGPQP 232 (403)
T ss_dssp SCEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCCSSCEEEEEECCCBTTBC
T ss_pred CCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEECCEECCCCCCCEEEEEEEECCCCCCC
T ss_conf 63567999988758986999999389881787999987999975599876423135405789998599999987778899
Q ss_pred -CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf -8512789999863069999887663000025689999855799959779998998899889999937556659999999
Q 002711 643 -GDWTSQLKSIFAKVCQPPSVDQSGLLRADIGQADNRPRIPKLLIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIIKD 721 (889)
Q Consensus 643 -G~wT~~L~~~~~~~~~~~~~~~s~~l~~~~~~g~~~~~~~~v~IdGPyG~~~~~~~~y~~vllVagGiGITP~lsiL~~ 721 (889)
|.+|+.|.+. +++|+ .+.|.||+|.+..+....+.++|||||+||||++|++++
T Consensus 233 ~G~~S~~L~~~-------------------l~~Gd------~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~ 287 (403)
T 1cqx_A 233 PGYVSNLLHDH-------------------VNVGD------QVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKV 287 (403)
T ss_dssp CCHHHHHHHHH-------------------CCTTC------EEEECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHH
T ss_pred CCEEHHHHHHC-------------------CCCCC------EEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 98121778607-------------------99998------899965766716178899988999706147368999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
Q ss_conf 99988631100024445798876899999862059999993888716579999999984459981999996504456787
Q 002711 722 VLNNIKQQKEIEEGITEDGGATKNSKKKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDQDGVIELHNYCTSVYEEGD 801 (889)
Q Consensus 722 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~liW~~R~~~~~~wf~~~l~el~~~~~~~~i~i~~y~T~~~~~~d 801 (889)
+.. . ..++++++|++|+.+++ +|.++++++++.. ..++++.++++..+. +
T Consensus 288 l~~--~------------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~s~~~~~-~ 337 (403)
T 1cqx_A 288 ALQ--A------------------------PPRQVVFVHGARNSAVH-AMRDRLREAAKTY--ENLDLFVFYDQPLPE-D 337 (403)
T ss_dssp HTC--S------------------------SCCCEEEEEEESCSSSC-HHHHHHHHHHHHC--TTEEEEEEESSCCTT-C
T ss_pred HHH--C------------------------CCCCEEEEEEECCHHHC-CHHHHHHHHHHHC--CCCEEEEEECCCCCC-C
T ss_conf 985--7------------------------99848999983884647-0799999999768--990899997888744-4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 24689998774310138876445883212047999889999998547999199999097268999999998420179870
Q 002711 802 ARSALITMLQSIHHAKNGLDIVSGTRVKTHFARPNWRTVFKHVAVKHTDERVGVFYCGAPGLTGELRRLSQDFSRKTTTK 881 (889)
Q Consensus 802 ~~~~~~~m~~~l~~~~~~~d~~sg~~~~~~~GRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~ 881 (889)
. .+ ....+.||.+...+ .+.. ..+ ...||+|||++|++.+++.+.+.+.. .
T Consensus 338 ~---------------------~~-~~~~~~G~i~~~~l-~~~~-~~~--~~~vyvCGp~~m~~~v~~~L~~~Gv~---~ 388 (403)
T 1cqx_A 338 V---------------------QG-RDYDYPGLVDVKQI-EKSI-LLP--DADYYICGPIPFMRMQHDALKNLGIH---E 388 (403)
T ss_dssp C---------------------BT-TTBSEESSCCGGGS-HHHH-CCT--TCEEEEESSHHHHHHHHHHHHHTTCC---G
T ss_pred C---------------------CC-CCCCCCCCCCHHHH-HHCC-CCC--CCEEEEECCHHHHHHHHHHHHHCCCC---H
T ss_conf 4---------------------46-66674788689999-6326-899--98799959899999999999986998---8
Q ss_pred EEEEEECC
Q ss_conf 99995079
Q 002711 882 FDFHKENF 889 (889)
Q Consensus 882 ~~fh~E~F 889 (889)
-.+|.|.|
T Consensus 389 ~~i~~E~F 396 (403)
T 1cqx_A 389 ARIHYEVF 396 (403)
T ss_dssp GGEEECCC
T ss_pred HHEEEEEE
T ss_conf 99677401
Done!