Query 002713
Match_columns 889
No_of_seqs 606 out of 4452
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:38:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 2.9E-80 6.3E-85 610.9 17.3 284 535-842 3-286 (303)
2 KOG0374 Serine/threonine speci 100.0 1E-74 2.2E-79 626.1 26.7 295 535-842 9-304 (331)
3 KOG0373 Serine/threonine speci 100.0 5.6E-73 1.2E-77 549.5 17.2 285 535-843 6-291 (306)
4 PTZ00480 serine/threonine-prot 100.0 2.9E-70 6.4E-75 589.7 30.7 294 535-844 11-304 (320)
5 cd07420 MPP_RdgC Drosophila me 100.0 1.4E-69 3.1E-74 585.6 31.4 285 534-838 6-320 (321)
6 cd07419 MPP_Bsu1_C Arabidopsis 100.0 4.2E-69 9.2E-74 586.6 29.8 303 538-840 1-311 (311)
7 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 1.5E-68 3.3E-73 573.2 29.9 283 535-841 2-284 (285)
8 PTZ00244 serine/threonine-prot 100.0 1.3E-68 2.9E-73 574.6 29.3 290 534-839 3-292 (294)
9 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 1.5E-68 3.3E-73 575.4 29.1 290 535-840 2-291 (293)
10 PTZ00239 serine/threonine prot 100.0 3.7E-68 8E-73 572.7 30.5 285 535-843 3-288 (303)
11 cd07417 MPP_PP5_C PP5, C-termi 100.0 4.7E-67 1E-71 568.1 29.8 291 531-845 12-308 (316)
12 cd07416 MPP_PP2B PP2B, metallo 100.0 4.4E-66 9.6E-71 560.1 32.0 286 536-844 4-300 (305)
13 smart00156 PP2Ac Protein phosp 100.0 7.3E-66 1.6E-70 551.2 29.4 269 558-840 1-269 (271)
14 cd07418 MPP_PP7 PP7, metalloph 100.0 1.1E-63 2.4E-68 546.3 31.4 300 531-840 8-365 (377)
15 KOG0371 Serine/threonine prote 100.0 4.7E-64 1E-68 499.1 13.0 286 535-844 20-305 (319)
16 KOG0375 Serine-threonine phosp 100.0 1.6E-63 3.4E-68 513.7 12.3 273 557-842 60-343 (517)
17 KOG0377 Protein serine/threoni 100.0 3.5E-53 7.6E-58 446.8 15.4 284 535-839 121-430 (631)
18 KOG0376 Serine-threonine phosp 100.0 3.2E-47 7E-52 414.6 13.9 274 557-844 182-461 (476)
19 PLN02193 nitrile-specifier pro 100.0 3.7E-36 7.9E-41 349.3 38.9 307 17-366 150-469 (470)
20 PLN02153 epithiospecifier prot 100.0 8E-36 1.7E-40 333.8 37.4 307 15-363 4-337 (341)
21 KOG4693 Uncharacterized conser 100.0 3.2E-35 7E-40 294.6 23.3 291 19-348 3-313 (392)
22 KOG4152 Host cell transcriptio 100.0 6.3E-34 1.4E-38 305.9 21.6 309 22-368 25-366 (830)
23 PLN02193 nitrile-specifier pro 100.0 8.8E-32 1.9E-36 312.7 37.2 281 45-368 120-413 (470)
24 KOG4441 Proteins containing BT 100.0 2.4E-32 5.1E-37 321.4 30.2 266 45-364 284-555 (571)
25 KOG4441 Proteins containing BT 100.0 3.6E-32 7.7E-37 319.9 28.4 256 6-306 299-556 (571)
26 TIGR03547 muta_rot_YjhT mutatr 100.0 2.7E-31 5.9E-36 298.0 32.7 280 24-362 2-343 (346)
27 KOG4693 Uncharacterized conser 100.0 2.5E-32 5.4E-37 273.9 20.4 227 26-278 75-312 (392)
28 PHA02713 hypothetical protein; 100.0 4.2E-31 9E-36 312.1 31.4 250 74-363 271-541 (557)
29 PHA02713 hypothetical protein; 100.0 2.3E-31 5E-36 314.3 27.0 251 10-306 274-543 (557)
30 KOG0379 Kelch repeat-containin 100.0 5.6E-31 1.2E-35 305.2 29.3 294 23-363 54-355 (482)
31 PRK14131 N-acetylneuraminic ac 100.0 1.9E-30 4.2E-35 293.9 31.6 287 18-364 17-367 (376)
32 KOG1230 Protein containing rep 100.0 2.5E-31 5.5E-36 281.2 21.6 262 24-306 61-350 (521)
33 cd00144 MPP_PPP_family phospho 100.0 2.6E-31 5.6E-36 279.8 19.9 218 588-826 1-224 (225)
34 TIGR03548 mutarot_permut cycli 100.0 5.4E-30 1.2E-34 284.7 31.3 275 28-348 2-314 (323)
35 PLN02153 epithiospecifier prot 100.0 4.7E-29 1E-33 279.2 33.7 261 83-367 5-286 (341)
36 PHA03098 kelch-like protein; P 100.0 1.9E-28 4.1E-33 290.9 30.3 254 11-308 267-523 (534)
37 KOG1230 Protein containing rep 100.0 6.9E-29 1.5E-33 262.8 16.1 219 11-246 101-344 (521)
38 KOG0379 Kelch repeat-containin 100.0 4.6E-28 9.9E-33 281.0 23.7 240 11-276 91-340 (482)
39 PHA03098 kelch-like protein; P 100.0 3.5E-27 7.6E-32 280.0 29.4 235 75-348 264-498 (534)
40 TIGR03548 mutarot_permut cycli 100.0 7.6E-27 1.6E-31 259.5 28.3 230 19-281 52-316 (323)
41 KOG4152 Host cell transcriptio 99.9 1.1E-26 2.3E-31 250.5 17.9 259 12-296 61-363 (830)
42 PRK14131 N-acetylneuraminic ac 99.9 2.7E-25 5.8E-30 251.9 27.8 257 12-302 54-374 (376)
43 TIGR03547 muta_rot_YjhT mutatr 99.9 3.3E-25 7.2E-30 248.8 28.3 251 12-294 33-344 (346)
44 PHA02790 Kelch-like protein; P 99.9 4.9E-25 1.1E-29 256.9 30.2 208 45-304 271-478 (480)
45 PHA02790 Kelch-like protein; P 99.9 3E-23 6.4E-28 242.0 27.8 206 105-363 267-478 (480)
46 cd07425 MPP_Shelphs Shewanella 99.9 9.9E-23 2.1E-27 210.9 14.9 185 588-811 1-196 (208)
47 PRK13625 bis(5'-nucleosyl)-tet 99.9 4.2E-22 9E-27 211.8 18.1 131 586-718 2-146 (245)
48 cd07423 MPP_PrpE Bacillus subt 99.8 2.8E-21 6.1E-26 204.4 11.5 130 585-717 1-142 (234)
49 cd07422 MPP_ApaH Escherichia c 99.8 3.1E-21 6.8E-26 204.4 10.8 160 587-765 1-169 (257)
50 cd07413 MPP_PA3087 Pseudomonas 99.8 1.9E-20 4.2E-25 196.0 16.6 123 588-715 2-143 (222)
51 PRK00166 apaH diadenosine tetr 99.8 3.1E-20 6.6E-25 199.0 17.6 219 586-829 2-260 (275)
52 TIGR00668 apaH bis(5'-nucleosy 99.8 2.2E-20 4.7E-25 197.6 11.7 126 586-725 2-133 (279)
53 cd07421 MPP_Rhilphs Rhilph pho 99.8 2.9E-19 6.3E-24 188.7 18.9 159 586-749 3-243 (304)
54 PRK11439 pphA serine/threonine 99.8 2E-19 4.2E-24 188.1 11.1 120 585-715 17-146 (218)
55 PHA02239 putative protein phos 99.8 1.4E-18 3.1E-23 182.5 16.0 174 586-811 2-218 (235)
56 cd07424 MPP_PrpA_PrpB PrpA and 99.8 6.8E-19 1.5E-23 182.8 12.6 147 585-749 1-157 (207)
57 PRK09968 serine/threonine-spec 99.7 5.3E-18 1.2E-22 177.0 10.4 120 585-715 15-144 (218)
58 COG3055 Uncharacterized protei 99.7 1.3E-14 2.9E-19 153.6 22.6 282 22-362 29-371 (381)
59 KOG2437 Muskelin [Signal trans 99.6 3.6E-16 7.9E-21 169.6 3.2 317 25-365 256-612 (723)
60 COG3055 Uncharacterized protei 99.6 6.2E-14 1.4E-18 148.5 19.6 245 17-294 69-372 (381)
61 KOG2437 Muskelin [Signal trans 99.3 3.8E-12 8.3E-17 138.8 5.9 199 138-348 239-458 (723)
62 PF00149 Metallophos: Calcineu 99.0 1.8E-09 3.9E-14 106.6 10.8 162 586-793 2-199 (200)
63 COG0639 ApaH Diadenosine tetra 98.8 3.6E-09 7.7E-14 103.0 6.2 147 663-816 2-155 (155)
64 PF13964 Kelch_6: Kelch motif 98.8 1.6E-08 3.6E-13 79.7 6.5 50 29-100 1-50 (50)
65 PLN02772 guanylate kinase 98.7 5.1E-08 1.1E-12 108.2 11.4 87 27-135 22-109 (398)
66 cd00841 MPP_YfcE Escherichia c 98.7 3.4E-07 7.4E-12 90.4 16.0 59 586-662 1-59 (155)
67 PLN02772 guanylate kinase 98.7 5.5E-08 1.2E-12 107.9 11.0 89 97-189 22-110 (398)
68 PF13964 Kelch_6: Kelch motif 98.7 3.1E-08 6.8E-13 78.1 6.5 50 99-153 1-50 (50)
69 PF13415 Kelch_3: Galactose ox 98.7 3.6E-08 7.7E-13 77.4 6.1 49 45-108 1-49 (49)
70 PRK09453 phosphodiesterase; Pr 98.6 8.9E-08 1.9E-12 97.4 9.4 68 586-663 2-77 (182)
71 PF12850 Metallophos_2: Calcin 98.6 4.3E-07 9.3E-12 89.4 13.5 60 586-663 2-61 (156)
72 PF07646 Kelch_2: Kelch motif; 98.5 2E-07 4.2E-12 73.2 6.4 49 29-94 1-49 (49)
73 TIGR00040 yfcE phosphoesterase 98.5 2E-06 4.3E-11 85.4 14.9 61 586-661 2-63 (158)
74 PF07646 Kelch_2: Kelch motif; 98.5 3.1E-07 6.8E-12 72.1 6.6 48 258-306 1-48 (49)
75 PF13415 Kelch_3: Galactose ox 98.5 2.5E-07 5.4E-12 72.6 6.0 48 109-161 1-49 (49)
76 cd07397 MPP_DevT Myxococcus xa 98.4 1.4E-06 3.1E-11 91.2 11.3 113 586-717 2-160 (238)
77 PF03089 RAG2: Recombination a 98.4 1.8E-05 3.9E-10 82.3 18.8 163 111-281 40-232 (337)
78 cd07379 MPP_239FB Homo sapiens 98.4 1.6E-06 3.5E-11 83.6 10.6 118 586-798 1-120 (135)
79 cd07388 MPP_Tt1561 Thermus the 98.4 3.2E-06 6.8E-11 88.4 12.8 70 586-662 6-75 (224)
80 PF13418 Kelch_4: Galactose ox 98.4 3.6E-07 7.8E-12 71.6 4.3 46 152-199 1-47 (49)
81 PF01344 Kelch_1: Kelch motif; 98.4 5.1E-07 1.1E-11 70.0 4.6 46 258-306 1-46 (47)
82 PF13418 Kelch_4: Galactose ox 98.3 4.9E-07 1.1E-11 70.9 4.2 47 99-150 1-48 (49)
83 PF13854 Kelch_5: Kelch motif 98.3 9.5E-07 2.1E-11 66.9 5.4 40 96-135 1-41 (42)
84 PF01344 Kelch_1: Kelch motif; 98.3 8E-07 1.7E-11 68.9 4.1 44 99-144 1-44 (47)
85 cd00838 MPP_superfamily metall 98.3 6.8E-06 1.5E-10 77.4 11.4 117 588-798 1-119 (131)
86 PF13854 Kelch_5: Kelch motif 98.3 1.7E-06 3.8E-11 65.4 5.7 42 26-85 1-42 (42)
87 PF03089 RAG2: Recombination a 98.1 0.00017 3.6E-09 75.3 18.6 182 26-230 19-233 (337)
88 cd07394 MPP_Vps29 Homo sapiens 98.1 0.00012 2.6E-09 74.2 17.0 58 586-661 1-64 (178)
89 PF07250 Glyoxal_oxid_N: Glyox 98.1 0.00014 3.1E-09 76.6 17.9 152 128-308 48-210 (243)
90 smart00612 Kelch Kelch domain. 97.9 1.2E-05 2.7E-10 61.8 4.6 47 47-110 1-47 (47)
91 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.00084 1.8E-08 70.8 19.6 161 75-259 46-213 (243)
92 cd07403 MPP_TTHA0053 Thermus t 97.8 0.00025 5.5E-09 67.9 11.3 56 588-660 1-56 (129)
93 cd07392 MPP_PAE1087 Pyrobaculu 97.7 6.4E-05 1.4E-09 76.4 6.9 65 587-663 1-66 (188)
94 smart00612 Kelch Kelch domain. 97.7 6.8E-05 1.5E-09 57.6 5.0 45 165-214 1-45 (47)
95 KOG0376 Serine-threonine phosp 97.6 1.1E-05 2.3E-10 90.2 -0.2 243 557-816 14-299 (476)
96 PRK05340 UDP-2,3-diacylglucosa 97.6 0.0002 4.3E-09 76.3 9.3 206 586-830 2-231 (241)
97 TIGR01854 lipid_A_lpxH UDP-2,3 97.6 0.00028 6.1E-09 74.7 10.4 206 587-830 1-229 (231)
98 cd07399 MPP_YvnB Bacillus subt 97.6 0.0032 6.9E-08 65.9 18.0 71 769-840 135-213 (214)
99 cd07400 MPP_YydB Bacillus subt 97.6 0.0013 2.9E-08 63.9 13.3 29 770-798 101-129 (144)
100 PRK11138 outer membrane biogen 97.5 0.057 1.2E-06 61.9 28.2 198 45-302 69-282 (394)
101 cd07404 MPP_MS158 Microscilla 97.5 9.3E-05 2E-09 74.0 4.3 67 587-662 1-68 (166)
102 PRK11340 phosphodiesterase Yae 97.4 0.00031 6.7E-09 76.2 7.7 70 585-662 50-125 (271)
103 cd07385 MPP_YkuE_C Bacillus su 97.4 0.00026 5.6E-09 74.3 6.3 69 586-662 3-76 (223)
104 COG0622 Predicted phosphoester 97.3 0.0083 1.8E-07 60.2 16.0 65 585-663 2-66 (172)
105 TIGR01640 F_box_assoc_1 F-box 97.2 0.049 1.1E-06 57.4 21.0 203 75-298 14-230 (230)
106 PRK11138 outer membrane biogen 97.1 0.16 3.5E-06 58.1 25.7 184 74-302 129-320 (394)
107 cd07390 MPP_AQ1575 Aquifex aeo 97.1 0.0021 4.6E-08 64.4 8.8 40 620-664 45-84 (168)
108 TIGR03729 acc_ester putative p 97.1 0.0013 2.7E-08 70.1 7.4 68 586-662 1-74 (239)
109 PRK04036 DNA polymerase II sma 97.0 0.003 6.6E-08 74.4 10.3 119 585-714 244-388 (504)
110 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.9 0.0021 4.5E-08 69.1 7.2 70 587-662 1-86 (262)
111 PF13360 PQQ_2: PQQ-like domai 96.9 0.74 1.6E-05 48.2 28.1 185 74-301 45-237 (238)
112 cd07395 MPP_CSTP1 Homo sapiens 96.9 0.058 1.3E-06 58.1 18.3 58 771-830 195-253 (262)
113 cd00840 MPP_Mre11_N Mre11 nucl 96.9 0.0021 4.5E-08 67.2 6.9 73 586-664 1-91 (223)
114 PF13360 PQQ_2: PQQ-like domai 96.9 0.78 1.7E-05 48.0 26.8 183 75-302 3-199 (238)
115 cd07396 MPP_Nbla03831 Homo sap 96.8 0.0031 6.6E-08 68.3 8.1 73 586-664 2-88 (267)
116 TIGR03300 assembly_YfgL outer 96.8 0.46 9.9E-06 54.0 26.1 182 75-302 75-267 (377)
117 KOG0918 Selenium-binding prote 96.7 0.00017 3.6E-09 78.4 -2.7 209 619-841 49-263 (476)
118 TIGR00619 sbcd exonuclease Sbc 96.7 0.0037 7.9E-08 67.1 7.6 71 586-662 2-88 (253)
119 cd07391 MPP_PF1019 Pyrococcus 96.7 0.0032 7E-08 63.4 6.7 43 620-662 44-88 (172)
120 cd07398 MPP_YbbF-LpxH Escheric 96.7 0.0041 8.9E-08 64.8 7.4 28 769-796 176-203 (217)
121 TIGR01640 F_box_assoc_1 F-box 96.6 0.16 3.4E-06 53.6 18.9 187 11-224 17-215 (230)
122 PHA02546 47 endonuclease subun 96.5 0.0053 1.2E-07 68.9 7.3 72 586-663 2-90 (340)
123 cd07386 MPP_DNA_pol_II_small_a 96.5 0.0088 1.9E-07 63.8 8.7 72 588-663 2-95 (243)
124 cd07402 MPP_GpdQ Enterobacter 96.5 0.008 1.7E-07 63.7 8.3 69 586-662 1-83 (240)
125 TIGR03300 assembly_YfgL outer 96.5 0.93 2E-05 51.5 25.7 184 74-302 114-305 (377)
126 COG1409 Icc Predicted phosphoh 96.5 0.073 1.6E-06 57.9 16.0 73 586-666 2-82 (301)
127 TIGR00024 SbcD_rel_arch putati 96.3 0.013 2.8E-07 61.6 8.1 69 585-663 15-103 (225)
128 cd08165 MPP_MPPE1 human MPPE1 96.2 0.0069 1.5E-07 60.0 5.5 44 620-663 41-90 (156)
129 cd00839 MPP_PAPs purple acid p 96.2 0.023 5.1E-07 62.2 10.2 37 770-806 181-217 (294)
130 PRK10966 exonuclease subunit S 96.2 0.011 2.5E-07 67.7 7.9 71 586-663 2-88 (407)
131 PRK11148 cyclic 3',5'-adenosin 96.1 0.015 3.3E-07 63.2 8.0 69 586-662 16-98 (275)
132 cd07393 MPP_DR1119 Deinococcus 96.0 0.017 3.6E-07 61.2 7.4 46 770-817 181-229 (232)
133 cd07383 MPP_Dcr2 Saccharomyces 95.9 0.023 5E-07 58.6 7.9 41 620-660 44-87 (199)
134 TIGR00583 mre11 DNA repair pro 95.5 0.036 7.8E-07 63.3 8.1 73 585-663 4-124 (405)
135 cd08163 MPP_Cdc1 Saccharomyces 95.5 0.26 5.5E-06 53.1 14.0 36 757-792 188-226 (257)
136 cd00216 PQQ_DH Dehydrogenases 95.4 7.8 0.00017 45.8 28.6 123 74-196 119-273 (488)
137 cd00216 PQQ_DH Dehydrogenases 95.2 9.2 0.0002 45.2 27.4 113 75-196 71-192 (488)
138 COG2129 Predicted phosphoester 95.1 2.3 4.9E-05 44.1 18.5 205 585-830 4-217 (226)
139 cd08164 MPP_Ted1 Saccharomyces 95.1 0.058 1.2E-06 55.0 7.0 63 592-661 24-110 (193)
140 cd07401 MPP_TMEM62_N Homo sapi 95.0 0.054 1.2E-06 58.3 7.0 28 774-801 190-217 (256)
141 PF12768 Rax2: Cortical protei 94.9 1.2 2.7E-05 48.3 17.0 111 74-198 15-130 (281)
142 cd07384 MPP_Cdc1_like Saccharo 94.7 0.069 1.5E-06 53.7 6.4 44 620-663 48-101 (171)
143 cd07380 MPP_CWF19_N Schizosacc 94.5 0.084 1.8E-06 51.8 6.3 68 588-660 1-68 (150)
144 PF07893 DUF1668: Protein of u 94.4 1 2.2E-05 50.7 15.5 123 161-305 74-216 (342)
145 COG1407 Predicted ICC-like pho 94.2 0.17 3.7E-06 52.9 8.2 71 584-664 19-112 (235)
146 cd08166 MPP_Cdc1_like_1 unchar 94.1 0.059 1.3E-06 55.0 4.4 43 620-662 45-93 (195)
147 COG1408 Predicted phosphohydro 93.8 0.13 2.8E-06 56.0 6.8 71 585-663 45-119 (284)
148 COG2908 Uncharacterized protei 93.8 0.27 5.9E-06 51.2 8.7 196 589-832 2-229 (237)
149 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.5 21 0.00045 42.7 25.2 112 75-196 79-198 (527)
150 cd00845 MPP_UshA_N_like Escher 93.3 0.14 3.1E-06 54.7 6.1 66 586-661 2-81 (252)
151 COG1311 HYS2 Archaeal DNA poly 92.9 1 2.2E-05 51.6 12.1 199 586-815 227-450 (481)
152 cd07387 MPP_PolD2_C PolD2 (DNA 92.9 5.1 0.00011 43.0 16.9 179 620-837 45-256 (257)
153 COG4186 Predicted phosphoester 92.8 0.46 9.9E-06 46.0 7.7 40 620-663 48-87 (186)
154 PF07893 DUF1668: Protein of u 91.4 3.5 7.5E-05 46.4 14.3 121 45-198 76-216 (342)
155 PLN02533 probable purple acid 91.4 0.28 6.2E-06 56.7 5.7 70 585-663 140-212 (427)
156 PF14582 Metallophos_3: Metall 90.0 0.43 9.2E-06 49.3 4.7 74 585-664 6-104 (255)
157 COG1520 FOG: WD40-like repeat 89.7 41 0.00088 38.1 23.3 197 74-305 77-279 (370)
158 cd07410 MPP_CpdB_N Escherichia 89.4 0.55 1.2E-05 51.1 5.5 21 773-793 208-229 (277)
159 PF12768 Rax2: Cortical protei 88.8 5.9 0.00013 43.1 12.8 125 113-253 2-130 (281)
160 PF08321 PPP5: PPP5 TPR repeat 88.3 1.6 3.4E-05 39.3 6.6 43 531-583 53-95 (95)
161 COG0420 SbcD DNA repair exonuc 87.6 1.5 3.2E-05 50.3 7.7 73 586-664 2-90 (390)
162 KOG3662 Cell division control 86.6 1.5 3.2E-05 49.6 6.7 42 620-661 96-143 (410)
163 KOG2055 WD40 repeat protein [G 85.7 17 0.00038 41.2 14.2 192 45-297 224-418 (514)
164 cd07378 MPP_ACP5 Homo sapiens 84.7 1.8 4E-05 46.8 6.3 23 771-793 190-212 (277)
165 TIGR03075 PQQ_enz_alc_DH PQQ-d 84.4 58 0.0013 39.0 19.2 132 104-252 64-201 (527)
166 cd07412 MPP_YhcR_N Bacillus su 83.8 1.5 3.3E-05 47.9 5.2 66 586-661 2-87 (288)
167 PF06874 FBPase_2: Firmicute f 83.6 1.1 2.4E-05 52.8 4.0 69 770-840 507-585 (640)
168 cd07408 MPP_SA0022_N Staphyloc 83.1 2.1 4.5E-05 46.0 5.8 65 586-661 2-81 (257)
169 PF02191 OLF: Olfactomedin-lik 80.2 82 0.0018 33.7 16.5 159 97-275 66-237 (250)
170 cd07411 MPP_SoxB_N Thermus the 80.1 3.6 7.8E-05 44.4 6.3 35 621-661 55-94 (264)
171 cd00842 MPP_ASMase acid sphing 73.8 6.4 0.00014 43.1 6.2 45 620-664 71-124 (296)
172 PRK13684 Ycf48-like protein; P 73.0 1.6E+02 0.0035 32.9 24.1 175 85-305 119-297 (334)
173 KOG0649 WD40 repeat protein [G 72.8 1.1E+02 0.0023 32.5 13.9 158 85-275 99-263 (325)
174 KOG3325 Membrane coat complex 71.7 15 0.00032 35.5 7.0 101 587-733 3-108 (183)
175 TIGR03074 PQQ_membr_DH membran 71.6 1.4E+02 0.0031 37.4 17.5 132 103-250 188-354 (764)
176 PF14583 Pectate_lyase22: Olig 70.8 1.2E+02 0.0026 34.5 15.1 224 74-347 59-303 (386)
177 PRK09419 bifunctional 2',3'-cy 70.0 6.5 0.00014 51.7 5.9 66 586-661 662-735 (1163)
178 cd00094 HX Hemopexin-like repe 69.5 1.4E+02 0.0029 30.5 17.2 152 105-299 12-178 (194)
179 PF09910 DUF2139: Uncharacteri 69.2 1.8E+02 0.0039 31.8 15.4 101 74-193 77-185 (339)
180 PF08268 FBA_3: F-box associat 69.1 90 0.002 29.4 12.2 70 74-145 19-89 (129)
181 cd07409 MPP_CD73_N CD73 ecto-5 68.9 10 0.00022 41.3 6.4 25 769-793 192-217 (281)
182 PF08268 FBA_3: F-box associat 68.8 96 0.0021 29.2 12.3 86 106-198 2-89 (129)
183 cd00094 HX Hemopexin-like repe 68.5 1.2E+02 0.0027 30.8 13.9 107 110-243 63-177 (194)
184 KOG2055 WD40 repeat protein [G 67.5 72 0.0015 36.5 12.3 158 110-306 225-388 (514)
185 TIGR03074 PQQ_membr_DH membran 64.9 3.7E+02 0.008 33.8 26.2 70 126-196 270-353 (764)
186 TIGR03866 PQQ_ABC_repeats PQQ- 64.2 2E+02 0.0042 30.4 23.4 93 74-189 10-105 (300)
187 PRK05137 tolB translocation pr 62.3 3E+02 0.0064 31.9 23.8 147 126-304 226-374 (435)
188 PRK11028 6-phosphogluconolacto 62.1 2.5E+02 0.0054 30.9 24.8 98 75-188 57-157 (330)
189 cd07406 MPP_CG11883_N Drosophi 62.0 15 0.00032 39.5 5.8 57 595-661 21-82 (257)
190 KOG2863 RNA lariat debranching 61.9 11 0.00024 41.5 4.7 72 586-663 2-89 (456)
191 PF04042 DNA_pol_E_B: DNA poly 61.3 13 0.00029 38.3 5.2 72 587-664 1-93 (209)
192 PF06433 Me-amine-dh_H: Methyl 61.1 1.1E+02 0.0024 34.2 12.3 107 74-189 16-128 (342)
193 TIGR02800 propeller_TolB tol-p 60.3 3E+02 0.0065 31.2 19.5 106 74-197 257-362 (417)
194 COG3855 Fbp Uncharacterized pr 60.2 9.9 0.00022 43.1 4.1 57 770-827 514-580 (648)
195 PRK04792 tolB translocation pr 60.0 3.3E+02 0.0073 31.7 24.0 146 126-304 242-390 (448)
196 PF08450 SGL: SMP-30/Gluconola 59.8 2.3E+02 0.0049 29.7 25.7 190 74-304 21-221 (246)
197 PF10282 Lactonase: Lactonase, 58.6 3E+02 0.0065 30.7 18.5 203 75-307 13-235 (345)
198 PRK04792 tolB translocation pr 58.3 3.6E+02 0.0077 31.5 19.7 142 75-243 242-384 (448)
199 KOG0310 Conserved WD40 repeat- 58.2 3.5E+02 0.0076 31.4 16.8 67 107-189 120-186 (487)
200 KOG2476 Uncharacterized conser 58.1 23 0.0005 40.4 6.4 71 584-659 5-75 (528)
201 PLN00033 photosystem II stabil 58.0 3.4E+02 0.0075 31.2 24.6 90 192-305 271-365 (398)
202 TIGR02800 propeller_TolB tol-p 55.1 3.6E+02 0.0078 30.6 24.4 146 126-304 214-362 (417)
203 PRK11028 6-phosphogluconolacto 54.0 3.3E+02 0.0072 29.8 23.1 97 75-189 12-112 (330)
204 cd07405 MPP_UshA_N Escherichia 53.8 18 0.0004 39.5 4.9 19 776-794 200-221 (285)
205 COG1768 Predicted phosphohydro 52.8 28 0.00062 34.8 5.4 40 620-663 46-87 (230)
206 PF12217 End_beta_propel: Cata 52.3 1.2E+02 0.0026 32.4 10.0 114 45-173 200-334 (367)
207 COG0737 UshA 5'-nucleotidase/2 52.3 18 0.0004 43.0 5.0 71 584-661 26-114 (517)
208 TIGR03866 PQQ_ABC_repeats PQQ- 51.2 3.2E+02 0.0068 28.7 26.2 94 74-189 52-147 (300)
209 PRK05137 tolB translocation pr 51.1 4.4E+02 0.0096 30.4 22.7 195 75-304 226-420 (435)
210 PRK01742 tolB translocation pr 51.1 4.4E+02 0.0096 30.4 22.7 139 126-304 228-369 (429)
211 cd00200 WD40 WD40 domain, foun 50.6 2.8E+02 0.0062 28.0 23.6 63 110-189 63-125 (289)
212 PRK04922 tolB translocation pr 49.7 4.6E+02 0.01 30.2 23.7 146 125-304 227-376 (433)
213 PLN00181 protein SPA1-RELATED; 49.5 6.4E+02 0.014 31.8 21.3 22 163-189 587-608 (793)
214 PRK03629 tolB translocation pr 49.0 4.8E+02 0.01 30.2 25.7 193 74-305 178-372 (429)
215 cd07407 MPP_YHR202W_N Saccharo 48.8 25 0.00055 38.3 5.0 38 620-662 53-97 (282)
216 cd00200 WD40 WD40 domain, foun 48.6 3E+02 0.0066 27.8 22.6 93 75-189 73-167 (289)
217 PF08450 SGL: SMP-30/Gluconola 48.5 3.4E+02 0.0074 28.3 15.5 146 77-241 62-213 (246)
218 PTZ00235 DNA polymerase epsilo 48.3 58 0.0013 35.5 7.4 76 585-662 28-122 (291)
219 PRK00178 tolB translocation pr 47.1 4.9E+02 0.011 29.8 24.7 147 126-305 223-372 (430)
220 COG4880 Secreted protein conta 47.0 4E+02 0.0087 30.6 13.6 90 73-174 404-493 (603)
221 PF13088 BNR_2: BNR repeat-lik 46.6 3.8E+02 0.0083 28.4 18.2 155 109-273 118-275 (275)
222 TIGR00282 metallophosphoestera 46.6 42 0.00091 36.3 6.1 67 586-662 2-71 (266)
223 PRK04043 tolB translocation pr 45.8 5.3E+02 0.012 29.8 22.4 152 126-306 213-367 (419)
224 KOG3339 Predicted glycosyltran 45.6 1.4E+02 0.003 30.3 8.8 89 619-712 40-140 (211)
225 KOG1432 Predicted DNA repair e 44.5 56 0.0012 36.2 6.6 43 620-662 103-147 (379)
226 KOG0643 Translation initiation 43.3 3.9E+02 0.0085 28.8 12.2 132 74-227 119-254 (327)
227 cd07382 MPP_DR1281 Deinococcus 41.6 63 0.0014 34.7 6.5 66 586-661 1-69 (255)
228 PRK09420 cpdB bifunctional 2', 40.0 42 0.00091 41.2 5.5 69 583-661 24-121 (649)
229 cd08162 MPP_PhoA_N Synechococc 39.8 49 0.0011 36.7 5.6 69 587-661 3-90 (313)
230 KOG4649 PQQ (pyrrolo-quinoline 39.7 5.2E+02 0.011 27.9 13.9 94 125-243 32-125 (354)
231 COG1520 FOG: WD40-like repeat 39.1 6E+02 0.013 28.5 20.3 154 74-240 162-319 (370)
232 PF14870 PSII_BNR: Photosynthe 38.0 5.9E+02 0.013 28.1 25.0 201 83-345 89-294 (302)
233 PF05096 Glu_cyclase_2: Glutam 37.6 2.5E+02 0.0053 30.4 10.1 93 74-189 67-159 (264)
234 PRK09419 bifunctional 2',3'-cy 37.4 42 0.00091 44.3 5.3 23 771-793 256-279 (1163)
235 PRK02889 tolB translocation pr 37.1 7E+02 0.015 28.7 23.9 147 126-304 220-368 (427)
236 TIGR01390 CycNucDiestase 2',3' 37.1 48 0.001 40.5 5.4 66 586-661 4-98 (626)
237 PRK04922 tolB translocation pr 35.7 7.4E+02 0.016 28.5 22.7 191 74-303 227-418 (433)
238 PRK13684 Ycf48-like protein; P 35.3 6.7E+02 0.014 27.9 20.7 165 76-276 153-321 (334)
239 KOG0649 WD40 repeat protein [G 35.3 5.8E+02 0.013 27.2 16.5 77 139-227 100-178 (325)
240 KOG2321 WD40 repeat protein [G 34.3 3.5E+02 0.0075 32.2 11.0 99 74-189 154-260 (703)
241 PRK05583 ribosomal protein L7A 33.7 42 0.0009 30.8 3.1 69 762-831 13-90 (104)
242 PF10282 Lactonase: Lactonase, 33.0 7.2E+02 0.016 27.6 23.5 215 45-306 48-287 (345)
243 KOG0646 WD40 repeat protein [G 32.9 8.4E+02 0.018 28.3 14.6 59 103-174 85-145 (476)
244 KOG3947 Phosphoesterases [Gene 32.5 59 0.0013 34.9 4.4 64 585-662 62-126 (305)
245 PRK00178 tolB translocation pr 32.3 8.1E+02 0.018 28.0 22.5 182 75-298 223-408 (430)
246 KOG0310 Conserved WD40 repeat- 32.2 8.7E+02 0.019 28.3 14.1 127 45-225 165-299 (487)
247 KOG0646 WD40 repeat protein [G 31.4 2.9E+02 0.0063 31.9 9.7 59 156-228 85-146 (476)
248 PF09637 Med18: Med18 protein; 31.3 51 0.0011 35.3 3.8 41 770-813 139-179 (250)
249 PF13088 BNR_2: BNR repeat-lik 29.6 6.9E+02 0.015 26.3 18.6 211 85-308 30-254 (275)
250 TIGR01530 nadN NAD pyrophospha 29.2 1E+02 0.0022 37.1 6.3 37 620-661 52-93 (550)
251 PF15525 DUF4652: Domain of un 29.1 4.4E+02 0.0095 26.9 9.5 76 117-198 79-157 (200)
252 PF02897 Peptidase_S9_N: Proly 28.9 9E+02 0.019 27.4 17.9 205 74-304 149-366 (414)
253 PTZ00422 glideosome-associated 27.9 66 0.0014 36.8 4.1 22 773-794 239-260 (394)
254 PRK11907 bifunctional 2',3'-cy 27.7 89 0.0019 39.3 5.5 67 585-661 116-212 (814)
255 KOG4649 PQQ (pyrrolo-quinoline 27.2 8.2E+02 0.018 26.4 13.0 97 74-194 32-130 (354)
256 PRK04043 tolB translocation pr 26.3 1E+03 0.023 27.4 20.0 191 75-304 213-408 (419)
257 smart00284 OLF Olfactomedin-li 26.3 8.4E+02 0.018 26.2 16.5 42 96-143 70-112 (255)
258 KOG2679 Purple (tartrate-resis 25.4 64 0.0014 34.6 3.1 70 586-662 45-126 (336)
259 PRK09558 ushA bifunctional UDP 25.3 86 0.0019 37.7 4.8 18 776-793 236-256 (551)
260 PF03178 CPSF_A: CPSF A subuni 24.3 7.2E+02 0.016 27.2 11.7 125 75-224 62-191 (321)
261 TIGR00282 metallophosphoestera 24.0 61 0.0013 35.0 2.8 39 620-662 2-41 (266)
262 PF05096 Glu_cyclase_2: Glutam 23.9 5.1E+02 0.011 28.0 9.6 109 160-299 52-160 (264)
263 PF02875 Mur_ligase_C: Mur lig 23.7 3E+02 0.0066 23.9 6.9 71 584-659 11-82 (91)
264 KOG1378 Purple acid phosphatas 23.6 1.4E+02 0.003 34.6 5.6 56 772-829 322-377 (452)
265 PTZ00421 coronin; Provisional 23.2 1.3E+03 0.028 27.3 20.9 63 110-189 138-200 (493)
266 PF02897 Peptidase_S9_N: Proly 23.1 1.1E+03 0.024 26.6 17.6 158 123-302 147-318 (414)
267 KOG0272 U4/U6 small nuclear ri 22.9 8.6E+02 0.019 27.9 11.3 119 156-308 307-428 (459)
268 KOG0308 Conserved WD40 repeat- 22.2 1.3E+03 0.027 28.2 12.9 121 109-252 129-265 (735)
269 PF13258 DUF4049: Domain of un 22.1 4.2E+02 0.0091 27.9 8.1 60 649-717 127-187 (318)
270 COG4946 Uncharacterized protei 21.9 1.3E+03 0.029 27.0 19.5 197 74-306 58-266 (668)
271 COG0634 Hpt Hypoxanthine-guani 21.4 5.6E+02 0.012 25.9 8.6 84 555-642 9-117 (178)
272 KOG0272 U4/U6 small nuclear ri 20.4 7.6E+02 0.016 28.3 10.3 47 9-55 277-324 (459)
273 KOG2321 WD40 repeat protein [G 20.0 8.2E+02 0.018 29.3 10.7 67 149-227 130-197 (703)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-80 Score=610.94 Aligned_cols=284 Identities=41% Similarity=0.724 Sum_probs=272.4
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002713 535 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 614 (889)
Q Consensus 535 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g~~~~~~ 614 (889)
+++.|+.|.+.. ++.+.++..||.++++||.+|++|+.+..|++|||||||||.||+.+|+..|-++..
T Consensus 3 ldr~ie~L~~~~----------li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t- 71 (303)
T KOG0372|consen 3 LDRQIEQLRRCE----------LIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPET- 71 (303)
T ss_pred HHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCC-
Confidence 478899998873 689999999999999999999999999999999999999999999999999988877
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002713 615 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 694 (889)
Q Consensus 615 ~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 694 (889)
+|+|||||||||.+|+|+++||++||++||++|+|||||||++.++..|||++||.+|||. ..+|+.+.++|
T Consensus 72 -----~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~---~~vWr~c~eiF 143 (303)
T KOG0372|consen 72 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGS---ANVWRYCTEIF 143 (303)
T ss_pred -----ceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCC---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999985 47999999999
Q ss_pred CCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002713 695 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 774 (889)
Q Consensus 695 ~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 774 (889)
++||++|+|+++|||||||++|++.++|||+.+.|-.+++..+ .++|||||||.+ ..||..++||+| +.||.+++
T Consensus 144 dyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~g-~m~DllWSDPee---~~g~~~SPRGaG-ylFG~dvv 218 (303)
T KOG0372|consen 144 DYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQEVPHDG-AMCDLLWSDPEE---GPGWGLSPRGAG-YLFGEDVV 218 (303)
T ss_pred HhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccccCCCCC-cchheeccCccc---CCCcccCCCCcc-ccccHHHH
Confidence 9999999999999999999999999999999999999999877 899999999987 359999999999 79999999
Q ss_pred HHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCC
Q 002713 775 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLP 842 (889)
Q Consensus 775 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~ 842 (889)
++||+.||+++|+|+||.|++||++.++++|+|||||||||++++|.||||.++++....|++|...+
T Consensus 219 ~~F~~~N~~~~I~RaHQLv~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~lde~~~~~F~vFeaa~ 286 (303)
T KOG0372|consen 219 ESFLEANGLSLICRAHQLVMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILELDEDLDKDFRVFEAAP 286 (303)
T ss_pred HHHHHhCChHHHHHHHHHHHhhHHHhcCCceEEEecCCchhhhcCChHHheeeccccCcceEeeecch
Confidence 99999999999999999999999999999999999999999999999999999999999999997654
No 2
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1e-74 Score=626.11 Aligned_cols=295 Identities=52% Similarity=0.931 Sum_probs=277.1
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhC-CCCCC
Q 002713 535 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYG-FPSTA 613 (889)
Q Consensus 535 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g-~~~~~ 613 (889)
++++|..++..............|+++||.+||..+.++|..+|+++++++||+|||||||||.||+++|+..| +|++.
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp~~ 88 (331)
T KOG0374|consen 9 LDELIRKLLSVGNKKTEKKRQVPLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPPDQ 88 (331)
T ss_pred HHHHHHHHhhccccCCCcccceeccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCCcc
Confidence 56777777776543334444456999999999999999999999999999999999999999999999999999 99877
Q ss_pred CCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhh
Q 002713 614 GDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQL 693 (889)
Q Consensus 614 ~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~ 693 (889)
+|||||||||||++|+||++||+++|++||++|++||||||++.+|..|||++||.++|+. ..+|+.|+++
T Consensus 89 ------~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~---~~~w~~F~~~ 159 (331)
T KOG0374|consen 89 ------NYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGE---IKLWKAFNDA 159 (331)
T ss_pred ------cEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcch---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999964 5799999999
Q ss_pred cCCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHH
Q 002713 694 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDR 773 (889)
Q Consensus 694 f~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~ 773 (889)
|++||++|+|++||+|+||||+|.+.++++|+.|.||.+.++.+ +++|||||||+. .+.+|.+|.||.+ +.||+++
T Consensus 160 f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~rp~~~~~~g-ll~DLlWsdp~~--~~~g~~~n~Rg~s-~~fg~~~ 235 (331)
T KOG0374|consen 160 FNCLPLAALIDGKILCMHGGLSPHLKSLDQIRAIPRPTDSPDKG-LLCDLLWSDPDD--DVPGWEENDRGVS-FTFGPAV 235 (331)
T ss_pred HhhCchhheecceEEEecCCCChhhcChHHHhhccCCcCCCccc-eeeeeeecCCCC--CCCCcccCCCcee-eEecHHH
Confidence 99999999999999999999999999999999999998887766 999999999986 4789999999999 8999999
Q ss_pred HHHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCC
Q 002713 774 VSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLP 842 (889)
Q Consensus 774 ~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~ 842 (889)
+++||+++++++||||||+|+|||++|++++++||||||+|||.++|+||+|.|++++.+++++++|..
T Consensus 236 v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~~n~gavm~Vd~~l~~sf~~l~p~~ 304 (331)
T KOG0374|consen 236 VEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEFDNAGAVMRVDKNLKCSFVILRPEG 304 (331)
T ss_pred HHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccccCCceEEEEECCCCeEEEEEecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999953
No 3
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-73 Score=549.45 Aligned_cols=285 Identities=38% Similarity=0.710 Sum_probs=270.3
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002713 535 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 614 (889)
Q Consensus 535 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g~~~~~~ 614 (889)
.++.|+...+.+ .|+++|+..||+.++++|..|.+++.++.|+.|||||||||.||+++|+..|-.|+.
T Consensus 6 ~d~wi~~vk~ck----------yLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~t- 74 (306)
T KOG0373|consen 6 LDQWIETVKKCK----------YLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDT- 74 (306)
T ss_pred HHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCc-
Confidence 356677665553 689999999999999999999999999999999999999999999999999877765
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002713 615 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 694 (889)
Q Consensus 615 ~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 694 (889)
+|||+|||||||.+|+|++.+|+.||.+||.+|.|||||||.+.+...|||++||..+||.. ..|+.+.++|
T Consensus 75 -----nYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGna---n~wkycckVF 146 (306)
T KOG0373|consen 75 -----NYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNA---NVWKYCCKVF 146 (306)
T ss_pred -----ceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCc---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999865 7999999999
Q ss_pred CCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002713 695 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 774 (889)
Q Consensus 695 ~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 774 (889)
+.|++||+|+++|+|||||+||++.++|||+.|.|..++|.++ .+|||+||||++ ++.|..++||+| +.||.+++
T Consensus 147 D~LtlaAiID~~vLCVHGGLSPdirtlDqir~i~R~qEiPh~G-~fcDlmWSDPed---ve~W~vSpRGAG-wlFGskVt 221 (306)
T KOG0373|consen 147 DFLTLAAIIDEKVLCVHGGLSPDIRTLDQIRLIERNQEIPHEG-PFCDLMWSDPED---VETWAVSPRGAG-WLFGSKVT 221 (306)
T ss_pred hhhhHHHHhcCcEEEEcCCCCccceeHHHHHhHHhhccCCCCC-CccceeccChhh---hhhheeCCCCcc-eeechhhh
Confidence 9999999999999999999999999999999999999999887 799999999985 788999999999 68999999
Q ss_pred HHHHHhcCCeEEEEeccccccceEEecCCe-EEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCCC
Q 002713 775 SDFCKRNKLQLIIRAHECVMDGFERFAQGQ-LITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPP 843 (889)
Q Consensus 775 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~-~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~ 843 (889)
.+|+..|+|++|+|+||.|++||++++++| |+|||||||||++++|.|+||.++++++-++|+|..+|.
T Consensus 222 ~eF~~iN~L~LicRaHQLV~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~d~~~~r~~k~F~avpd 291 (306)
T KOG0373|consen 222 TEFNHINNLNLICRAHQLVQEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSFDDNLERETKIFSAVPD 291 (306)
T ss_pred HHHHhccchHHHHhHHHHHHhhHHhccCCCCEEEEecCCchhhhccCeeeEEEecccCCccceeeeecCC
Confidence 999999999999999999999999999988 999999999999999999999999999999999987654
No 4
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=2.9e-70 Score=589.74 Aligned_cols=294 Identities=47% Similarity=0.860 Sum_probs=275.5
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002713 535 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 614 (889)
Q Consensus 535 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g~~~~~~ 614 (889)
++++|+.+++.+.+++. ....|+++|+.+||++|+++|++||+++++.+|++|||||||||.+|+++|+..++++.+
T Consensus 11 ~~~~i~~~~~~~~~~~~--~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~- 87 (320)
T PTZ00480 11 VDNIIERLLSVRGSKPG--KNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPES- 87 (320)
T ss_pred HHHHHHHHHhccccCcc--ccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcc-
Confidence 68899999987766542 224689999999999999999999999999999999999999999999999999998876
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002713 615 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 694 (889)
Q Consensus 615 ~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 694 (889)
+|||||||||||++++||+.+|+++|+.+|.+|++||||||.+.++..|||..||..+|+ ..+|..++++|
T Consensus 88 -----~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~----~~l~~~~~~~F 158 (320)
T PTZ00480 88 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYT----IKLWKTFTDCF 158 (320)
T ss_pred -----eEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcC----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999994 46999999999
Q ss_pred CCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002713 695 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 774 (889)
Q Consensus 695 ~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 774 (889)
++||+||+|++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 159 ~~LPlaAiI~~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWSDP~~--~~~~~~~s~RG~g-~~FG~~~~ 234 (320)
T PTZ00480 159 NCLPVAALIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDTG-LLCDLLWSDPDK--DVQGWADNERGVS-YVFSQEIV 234 (320)
T ss_pred HhccHhheecCcEEEEcCCcCcccCCHHHHhcccCCCCCCccc-hhhheeecCccc--ccCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887654 899999999985 3578999999999 68999999
Q ss_pred HHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCCCC
Q 002713 775 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 844 (889)
Q Consensus 775 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 844 (889)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++.+.++.|.|.+..
T Consensus 235 ~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~p~~~~ 304 (320)
T PTZ00480 235 QVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQG 304 (320)
T ss_pred HHHHHhCCCcEEEEcCccccCceEEeCCCcEEEEeCCcccCCCCCccEEEEEECCCCcEeEEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876543
No 5
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=1.4e-69 Score=585.56 Aligned_cols=285 Identities=33% Similarity=0.587 Sum_probs=256.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecC----CeEEEecCCCCHHHHHHHHHHhCC
Q 002713 534 LHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGF 609 (889)
Q Consensus 534 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~----~i~vvGDiHG~~~~l~~il~~~g~ 609 (889)
.++++|+.|++.. .|+++++.+||++|+++|++||+|+++.. |++|||||||||.||+++|+..|+
T Consensus 6 ~~~~~i~~~~~~~----------~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~ 75 (321)
T cd07420 6 HIDALIEAFKEKQ----------LLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGL 75 (321)
T ss_pred HHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCC
Confidence 3688999998753 47899999999999999999999999986 899999999999999999999998
Q ss_pred CCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhh
Q 002713 610 PSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTR 689 (889)
Q Consensus 610 ~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~ 689 (889)
|+... +|||||||||||++|+||+.+|++||++||++|++||||||.+.++..|||.+||..+|+.. ...+|..
T Consensus 76 ~~~~~-----~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~-~~~l~~~ 149 (321)
T cd07420 76 PSPEN-----PYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLH-GKKILRL 149 (321)
T ss_pred CCccc-----eEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCcc-HHHHHHH
Confidence 86532 79999999999999999999999999999999999999999999999999999999999753 4679999
Q ss_pred hhhhcCCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCccc-----CC---------------------CCchhhcc
Q 002713 690 FNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITM-----DA---------------------GSIILMDL 743 (889)
Q Consensus 690 ~~~~f~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~-----~~---------------------~~~~~~dl 743 (889)
++++|++||+||+|+++||||||||++ ..++++|+.|+|+... +. ...+++|+
T Consensus 150 ~~~~F~~LPlaaii~~~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 228 (321)
T cd07420 150 LEDVFSWLPLATIIDNKILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDI 228 (321)
T ss_pred HHHHHHhCCceEEEcCCEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhhee
Confidence 999999999999999999999999997 5799999999884211 11 01368899
Q ss_pred ccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEE
Q 002713 744 LWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGA 823 (889)
Q Consensus 744 lWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga 823 (889)
|||||.+. ...|.+++||.| +.||++++++||++|++++||||||++++||+++++++|||||||||||+..+|+||
T Consensus 229 LWSDP~~~--~~~~~~~~RG~g-~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~ga 305 (321)
T cd07420 229 LWSDPKAQ--KGCKPNTFRGGG-CYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGA 305 (321)
T ss_pred eecCCccC--CCCCccCCCCCc-cccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccEE
Confidence 99999853 233666789999 689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCceEEeEEe
Q 002713 824 ILVVGRGLVVVPKLI 838 (889)
Q Consensus 824 ~l~~~~~~~~~~~~~ 838 (889)
+|+|++++.+.++.|
T Consensus 306 vl~i~~~~~~~f~~~ 320 (321)
T cd07420 306 YIKLGPDLTPHFVQY 320 (321)
T ss_pred EEEECCCCceeEEEe
Confidence 999999998887765
No 6
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=4.2e-69 Score=586.61 Aligned_cols=303 Identities=74% Similarity=1.267 Sum_probs=279.5
Q ss_pred HHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCC--CC
Q 002713 538 IISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTA--GD 615 (889)
Q Consensus 538 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g~~~~~--~~ 615 (889)
+|+.||+|+.|+++....+.|+++|+.+||++|+++|++||+++++.+|++|||||||||.+|+++|+.+++++.. ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~ 80 (311)
T cd07419 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGD 80 (311)
T ss_pred ChHHhcCcccccCccccccCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCC
Confidence 4788999999999888888999999999999999999999999999999999999999999999999999988641 22
Q ss_pred cceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCC--Cchhhhhhhhhh
Q 002713 616 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGEN--DGIWAWTRFNQL 693 (889)
Q Consensus 616 ~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~--~~~~~~~~~~~~ 693 (889)
....+|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||..||..+|+.. ++..+|..++++
T Consensus 81 ~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~ 160 (311)
T cd07419 81 IEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRL 160 (311)
T ss_pred CcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHH
Confidence 222379999999999999999999999999999999999999999999999999999999999762 335699999999
Q ss_pred cCCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCC---CCCce-EEe
Q 002713 694 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNA---RGPGL-VTF 769 (889)
Q Consensus 694 f~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~---rg~~~-~~f 769 (889)
|++||++++++++++||||||+|.+.++++|+.+.||...+....+++|+|||||...+...+|.+|+ ||.|. +.|
T Consensus 161 f~~LPl~avi~~~~l~vHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~f 240 (311)
T cd07419 161 FEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKF 240 (311)
T ss_pred HHhCchhheecccEEEEccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeE
Confidence 99999999999999999999999999999999999998544444589999999999765567888887 99995 799
Q ss_pred CHHHHHHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEecc
Q 002713 770 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 840 (889)
Q Consensus 770 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 840 (889)
|++++++||++||+++||||||++++||+++++++|||||||||||+.++|+||+|+++++++++|++|+|
T Consensus 241 g~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i~~~~~~~~~~~~~ 311 (311)
T cd07419 241 GPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGRDLTIIPKLIHP 311 (311)
T ss_pred CHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 7
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=1.5e-68 Score=573.21 Aligned_cols=283 Identities=42% Similarity=0.754 Sum_probs=267.3
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002713 535 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 614 (889)
Q Consensus 535 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g~~~~~~ 614 (889)
++++|+.+++.. .|+++++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..++++.+
T Consensus 2 ~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~- 70 (285)
T cd07415 2 LDKWIEQLKKCE----------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDT- 70 (285)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCC-
Confidence 467888888643 478999999999999999999999999999999999999999999999999988765
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002713 615 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 694 (889)
Q Consensus 615 ~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 694 (889)
+|||||||||||++++||+.+|++||+.+|.++++||||||.+.++..|||.+||..+|+. ..+|..++++|
T Consensus 71 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~---~~l~~~~~~~f 142 (285)
T cd07415 71 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGN---ANVWKYCTDLF 142 (285)
T ss_pred -----eEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCc---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999974 36999999999
Q ss_pred CCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002713 695 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 774 (889)
Q Consensus 695 ~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 774 (889)
++||++|++++++|||||||+|.+.++++|+.++||.+++..+ +++|+|||||... .+|.+|+||.| +.||++++
T Consensus 143 ~~lPlaaii~~~i~cvHgGi~p~~~~~~~i~~i~r~~~~~~~~-~~~dllWsDP~~~---~~~~~~~Rg~g-~~fg~~~~ 217 (285)
T cd07415 143 DYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQEVPHEG-PMCDLLWSDPDDI---EGWGISPRGAG-YLFGQDVV 217 (285)
T ss_pred HHhHHHhEeCCeEEEEcCCCCCCcccHHHhhcccCCCCCCCCC-CccceEecCCCcc---CCCCcCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887655 7899999999863 68999999999 78999999
Q ss_pred HHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccC
Q 002713 775 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPL 841 (889)
Q Consensus 775 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~ 841 (889)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++++.++.|.|.
T Consensus 218 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i~~~~~~~~~~~~~~ 284 (285)
T cd07415 218 EEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAA 284 (285)
T ss_pred HHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999874
No 8
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1.3e-68 Score=574.58 Aligned_cols=290 Identities=41% Similarity=0.781 Sum_probs=270.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCC
Q 002713 534 LHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTA 613 (889)
Q Consensus 534 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g~~~~~ 613 (889)
+++++|..+++...+.. .....++.+++.+||++|+++|++||+++++.+|++|||||||||.+|+++|+..++++.+
T Consensus 3 ~~~~~i~~~~~~~~~~~--~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~~ 80 (294)
T PTZ00244 3 LVQTLIEKMLTVKGNRT--QRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPYS 80 (294)
T ss_pred hHHHHHHHHHhcccCCC--ccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCcc
Confidence 46889999998654432 2344789999999999999999999999999999999999999999999999999998776
Q ss_pred CCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhh
Q 002713 614 GDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQL 693 (889)
Q Consensus 614 ~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~ 693 (889)
+|||||||||||++|+||+.+|+++|+.+|.++++||||||.+.++..|||.+||..+|+ ..+|..+.++
T Consensus 81 ------~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~~ 150 (294)
T PTZ00244 81 ------NYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYN----IKLFKAFTDV 150 (294)
T ss_pred ------cEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhh----HHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999995 4699999999
Q ss_pred cCCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHH
Q 002713 694 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDR 773 (889)
Q Consensus 694 f~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~ 773 (889)
|+.||++|++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||+++
T Consensus 151 f~~lPlaaii~~~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~ 226 (294)
T PTZ00244 151 FNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDRG-ILCDLLWADPED--EVRGFLESDRGVS-YLFGEDI 226 (294)
T ss_pred HHhCchheEecCeeEEEcCCCCchhhHHHHhhhhccccCCCccc-hhheeeecCccc--ccCCCCcCCCCCc-cccCHHH
Confidence 99999999999999999999999999999999999999877654 899999999985 3578999999999 7999999
Q ss_pred HHHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEec
Q 002713 774 VSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIH 839 (889)
Q Consensus 774 ~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~ 839 (889)
+++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+++++|.
T Consensus 227 ~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~f~~~~ 292 (294)
T PTZ00244 227 VNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLIIP 292 (294)
T ss_pred HHHHHHHcCCcEEEEcCccccCceEEcCCCeEEEEeCCccccCCCCceEEEEEECCCCcEeEEEee
Confidence 999999999999999999999999999999999999999999999999999999999999998764
No 9
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=1.5e-68 Score=575.37 Aligned_cols=290 Identities=49% Similarity=0.900 Sum_probs=271.2
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002713 535 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 614 (889)
Q Consensus 535 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g~~~~~~ 614 (889)
++++|+.+++.+.++. .....|+++++.+||++|+++|++||+++++++|++||||||||+.+|+++|+..++++.+
T Consensus 2 ~~~~i~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~- 78 (293)
T cd07414 2 IDSIIERLLEVRGSRP--GKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPES- 78 (293)
T ss_pred HHHHHHHHHhccccCC--cccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcc-
Confidence 4678888888765543 2334689999999999999999999999999999999999999999999999999998776
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002713 615 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 694 (889)
Q Consensus 615 ~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 694 (889)
+|||||||||||++++||+.+|+++|++||.++++||||||.+.++..|||..||..+|+ ..+|..+.++|
T Consensus 79 -----~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~~f 149 (293)
T cd07414 79 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYN----IKLWKTFTDCF 149 (293)
T ss_pred -----eEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhh----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999985 46999999999
Q ss_pred CCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002713 695 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 774 (889)
Q Consensus 695 ~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 774 (889)
++||++|++++++||||||++|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 150 ~~lPlaa~i~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~ 225 (293)
T cd07414 150 NCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQG-LLCDLLWSDPDK--DVQGWGENDRGVS-FTFGKDVV 225 (293)
T ss_pred HHhHHHHhhCCcEEEEccCCCcccCcHHHHhcccCCCCCCchh-hHhhhhccCccc--ccCCCccCCCCcc-eecCHHHH
Confidence 9999999999999999999999999999999999999877654 899999999986 3578999999999 68999999
Q ss_pred HHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEecc
Q 002713 775 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 840 (889)
Q Consensus 775 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 840 (889)
++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.++.|+|
T Consensus 226 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~~~~~~~ 291 (293)
T cd07414 226 AKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 291 (293)
T ss_pred HHHHHHcCCeEEEECCccccCeEEEeCCCcEEEEecCCcccCCCCceEEEEEECCCCcEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999876
No 10
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=3.7e-68 Score=572.72 Aligned_cols=285 Identities=41% Similarity=0.769 Sum_probs=266.3
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002713 535 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 614 (889)
Q Consensus 535 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g~~~~~~ 614 (889)
++++|+.+++.. .|+++++.+||++|+++|++||+++++.+|++|||||||||.+|+++|+..+.++..
T Consensus 3 ~~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~- 71 (303)
T PTZ00239 3 IDRHIATLLNGG----------CLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNA- 71 (303)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc-
Confidence 477888887643 478999999999999999999999999999999999999999999999999987765
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002713 615 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 694 (889)
Q Consensus 615 ~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 694 (889)
+|||||||||||++++||+.+|++||+.+|.++++||||||.+.++..|||.+||..+|+.. .+|..++++|
T Consensus 72 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~---~~~~~~~~~f 143 (303)
T PTZ00239 72 -----NYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNS---NPWRLFMDVF 143 (303)
T ss_pred -----eEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcCh---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999753 5899999999
Q ss_pred CCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002713 695 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 774 (889)
Q Consensus 695 ~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 774 (889)
++||++|+|++++|||||||+|.+.++++|+.++||.+++..+ +++|+|||||.+ ..+|.+|+||.| +.||++++
T Consensus 144 ~~LPlaaii~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~~~Rg~g-~~fg~~~~ 218 (303)
T PTZ00239 144 DCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEG-PFCDLMWSDPEE---VEYWAVNSRGAG-YLFGAKVT 218 (303)
T ss_pred HhCchheEEcCeEEEEcCccCcccccHhhhccccCCCCCCCCC-CceeeEecCccc---cCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887665 789999999985 468999999999 68999999
Q ss_pred HHHHHhcCCeEEEEeccccccceEEecC-CeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCCC
Q 002713 775 SDFCKRNKLQLIIRAHECVMDGFERFAQ-GQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPP 843 (889)
Q Consensus 775 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~-~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~ 843 (889)
++||++||+++||||||++++||+++++ ++|||||||||||+..+|+||||.+++++++.++.|.|.+.
T Consensus 219 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i~~~~~~~~~~~~~~~~ 288 (303)
T PTZ00239 219 KEFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPE 288 (303)
T ss_pred HHHHHHCCCcEEEEcChhhccceEEEeCCCeEEEEECCCcccCCCCceEEEEEECCCCcEeeEEeeCCCc
Confidence 9999999999999999999999998765 45999999999999999999999999999999999998754
No 11
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=4.7e-67 Score=568.12 Aligned_cols=291 Identities=35% Similarity=0.639 Sum_probs=268.8
Q ss_pred CchHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCC----eEEEecCCCCHHHHHHHHHH
Q 002713 531 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAP----VKVFGDLHGQFGDLMRLFDE 606 (889)
Q Consensus 531 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~----i~vvGDiHG~~~~l~~il~~ 606 (889)
+..+++++|+.+++.+ .|+.+++.+||++|+++|++||+++++..| ++|||||||||.+|+++|+.
T Consensus 12 ~~~~~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~ 81 (316)
T cd07417 12 TLEFVKEMIEWFKDQK----------KLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFEL 81 (316)
T ss_pred CHHHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHh
Confidence 4567889999998753 478999999999999999999999999876 99999999999999999999
Q ss_pred hCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhh
Q 002713 607 YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWA 686 (889)
Q Consensus 607 ~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~ 686 (889)
.|+++..+ +|||||||||||++|+|||.+|++||+.+|++|++||||||.+.++..|||..||..+|+ ..+
T Consensus 82 ~g~~~~~~-----~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~----~~l 152 (316)
T cd07417 82 NGLPSETN-----PYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYN----EQM 152 (316)
T ss_pred cCCCCccC-----eEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhccc----HHH
Confidence 99986542 799999999999999999999999999999999999999999999999999999999985 369
Q ss_pred hhhhhhhcCCCceEEEEcCeEEEecCCC-CCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCc
Q 002713 687 WTRFNQLFNCLPLAALIEKKIICMHGGI-GRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPG 765 (889)
Q Consensus 687 ~~~~~~~f~~LPlaa~i~~~i~~vHgGi-~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~ 765 (889)
|..+.++|++||+++++++++||||||| ++.+.++++|++++||.+.+..+ +++|+|||||.+ ..+|.+|+||.|
T Consensus 153 ~~~~~~~f~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~s~Rg~g 228 (316)
T cd07417 153 FDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSG-LMCELLWSDPQP---QPGRSPSKRGVG 228 (316)
T ss_pred HHHHHHHHHhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccc-cceeeeecCCCC---CCCCCccCCCCc
Confidence 9999999999999999999999999999 56789999999999997766544 899999999985 358999999999
Q ss_pred eEEeCHHHHHHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcC-CceEEeEEeccCCCC
Q 002713 766 LVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGR-GLVVVPKLIHPLPPP 844 (889)
Q Consensus 766 ~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~-~~~~~~~~~~~~~~~ 844 (889)
+.||++++++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++ ++++.++.|.|.+..
T Consensus 229 -~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~ 307 (316)
T cd07417 229 -CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHP 307 (316)
T ss_pred -eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCC
Confidence 699999999999999999999999999999999999999999999999999999999999999 899999999887654
Q ss_pred C
Q 002713 845 L 845 (889)
Q Consensus 845 ~ 845 (889)
+
T Consensus 308 ~ 308 (316)
T cd07417 308 N 308 (316)
T ss_pred C
Confidence 4
No 12
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=4.4e-66 Score=560.08 Aligned_cols=286 Identities=37% Similarity=0.649 Sum_probs=261.5
Q ss_pred HHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCC
Q 002713 536 KKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGD 615 (889)
Q Consensus 536 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g~~~~~~~ 615 (889)
+-+++.+.+.. .|+++++.+||++|+++|++||+++++++|++||||||||+.||+++|+..+.++.+
T Consensus 4 ~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~-- 71 (305)
T cd07416 4 DVLKAHFMREG----------RLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANT-- 71 (305)
T ss_pred HHHHHHHHcCC----------CCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc--
Confidence 45666666553 478999999999999999999999999999999999999999999999999988766
Q ss_pred cceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhcC
Q 002713 616 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFN 695 (889)
Q Consensus 616 ~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~ 695 (889)
+|||||||||||++|+||+.+|++||+.+|.+|++||||||.+.++..|||..||..+|+ ..+|..+.++|+
T Consensus 72 ----~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~----~~l~~~~~~~f~ 143 (305)
T cd07416 72 ----RYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS----ERVYDACMEAFD 143 (305)
T ss_pred ----eEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhcc----HHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999884 469999999999
Q ss_pred CCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCC----CCcccC-CCCCceEEeC
Q 002713 696 CLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSI----EGLRPN-ARGPGLVTFG 770 (889)
Q Consensus 696 ~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~----~~~~~n-~rg~~~~~fg 770 (889)
.||++|++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||...... .+|.+| +||.| +.||
T Consensus 144 ~LPlaaii~~~i~~vHGGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g-~~fG 221 (305)
T cd07416 144 CLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFG-PMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCS-YFYS 221 (305)
T ss_pred hccceeEEcCCEEEEcCCCCcccccHHHhcccCCCCCCCCCC-cceeeeecCcccccccccccccccccCCCCCc-eecC
Confidence 999999999999999999999999999999999998876655 7899999999864321 358776 89999 7999
Q ss_pred HHHHHHHHHhcCCeEEEEeccccccceEEecCC------eEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCCCC
Q 002713 771 PDRVSDFCKRNKLQLIIRAHECVMDGFERFAQG------QLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 844 (889)
Q Consensus 771 ~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 844 (889)
++++++||++||+++||||||++++||++++++ +||||||||||||..+|+||+|.++++. +.++.|.+.|-+
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i~~~~-~~~~~~~~~~~~ 300 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPHP 300 (305)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEEcCCc-ceEEEecCCCCC
Confidence 999999999999999999999999999998887 9999999999999999999999999985 688888776543
No 13
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=7.3e-66 Score=551.17 Aligned_cols=269 Identities=48% Similarity=0.880 Sum_probs=255.6
Q ss_pred cCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHH
Q 002713 558 LDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLET 637 (889)
Q Consensus 558 ~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~ev 637 (889)
++++++.+||++|+++|++||+++++++|++||||||||+.+|+++|+..+.++.+ +|||||||||||++++||
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~------~~vfLGD~VDrG~~s~e~ 74 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDT------NYVFLGDYVDRGPFSIEV 74 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCc------eEEEeCCccCCCCChHHH
Confidence 35789999999999999999999999999999999999999999999999987766 899999999999999999
Q ss_pred HHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhcCCCceEEEEcCeEEEecCCCCCC
Q 002713 638 ITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRS 717 (889)
Q Consensus 638 l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~i~~vHgGi~~~ 717 (889)
+.+|++||+.+|.++++||||||.+.++..|||..||..+|+ ..+|..+.++|++||++|++++++|||||||+|.
T Consensus 75 l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~----~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~ 150 (271)
T smart00156 75 ILLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYG----EEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPD 150 (271)
T ss_pred HHHHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcC----HHHHHHHHHHHhhChhheEEcCeEEEEecCCCCc
Confidence 999999999999999999999999999999999999999985 4699999999999999999999999999999999
Q ss_pred CcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcCCeEEEEeccccccce
Q 002713 718 IHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGF 797 (889)
Q Consensus 718 ~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~ 797 (889)
+.++++|+.++||.+.+... +++|+|||||.. ...+|.+|+||.| +.||++++++||++||+++||||||++++||
T Consensus 151 ~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~ 226 (271)
T smart00156 151 LTTLDDIRKLKRPQEPPDEG-LLIDLLWSDPDQ--PVDGFQPSIRGAS-YYFGPDAVDEFLKKNNLKLIIRAHQVVDDGY 226 (271)
T ss_pred cCCHHHHhcccCCCCCCchh-hhhheeecCCCc--ccCCCccCCCCCc-cccCHHHHHHHHHHCCCeEEEecCcccCCcE
Confidence 99999999999998776554 899999999974 3578999999999 6899999999999999999999999999999
Q ss_pred EEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEecc
Q 002713 798 ERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 840 (889)
Q Consensus 798 ~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 840 (889)
+++++++|||||||||||+..+|+||+|.+++++.+.++.+.|
T Consensus 227 ~~~~~~~~~TvfSa~~y~~~~~n~~a~~~i~~~~~~~~~~~~~ 269 (271)
T smart00156 227 EFFHDRKLVTIFSAPNYCGRFGNKAAVLKVDKDLKLSFEQFKP 269 (271)
T ss_pred EEecCCcEEEEECCcccccCCCceEEEEEECCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999998876
No 14
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=1.1e-63 Score=546.32 Aligned_cols=300 Identities=33% Similarity=0.585 Sum_probs=258.7
Q ss_pred CchHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeec----CCeEEEecCCCCHHHHHHHHHH
Q 002713 531 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDE 606 (889)
Q Consensus 531 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~----~~i~vvGDiHG~~~~l~~il~~ 606 (889)
+.+.++.+|+.+.....--++......|+.+++.+||++|++||++||+|++++ +|++||||||||+.+|+++|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~ 87 (377)
T cd07418 8 TNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLED 87 (377)
T ss_pred CHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHH
Confidence 344567888877544221123334456899999999999999999999999998 8999999999999999999999
Q ss_pred hCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhh
Q 002713 607 YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWA 686 (889)
Q Consensus 607 ~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~ 686 (889)
.|+++.+. +|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||..||..+|+.. +..+
T Consensus 88 ~g~~~~~~-----~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~-~~~l 161 (377)
T cd07418 88 AGFPDQNR-----FYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDK-GKHV 161 (377)
T ss_pred hCCCCCCc-----eEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCch-HHHH
Confidence 99886542 69999999999999999999999999999999999999999999999999999999999754 4579
Q ss_pred hhhhhhhcCCCceEEEEcCeEEEecCCC---------------------------CCCCcCHHHhhcccCCc-ccCCCC-
Q 002713 687 WTRFNQLFNCLPLAALIEKKIICMHGGI---------------------------GRSIHSVEQIEKLERPI-TMDAGS- 737 (889)
Q Consensus 687 ~~~~~~~f~~LPlaa~i~~~i~~vHgGi---------------------------~~~~~~~~~i~~~~rp~-~~~~~~- 737 (889)
|+.++++|++||++|+|++++||||||| +|.+.++++|+.++||. +.+..+
T Consensus 162 ~~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~ 241 (377)
T cd07418 162 YRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGS 241 (377)
T ss_pred HHHHHHHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCc
Confidence 9999999999999999999999999999 44578999999999985 444332
Q ss_pred -chhhccccCCCCCCCCCCCcccC-CCCCceEEeCHHHHHHHHHhcCCeEEEEeccc------------cccceEEecC-
Q 002713 738 -IILMDLLWSDPTENDSIEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHEC------------VMDGFERFAQ- 802 (889)
Q Consensus 738 -~~~~dllWsdP~~~~~~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~------------~~~G~~~~~~- 802 (889)
.+++|||||||.. ..+|.+| .||.| +.||++++++||++|++++||||||+ |++||+++++
T Consensus 242 ~~i~~dlLWSDP~~---~~g~~~~~~RG~g-~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~ 317 (377)
T cd07418 242 NLIPGDVLWSDPSL---TPGLSPNKQRGIG-LLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDV 317 (377)
T ss_pred cccceeeEeeCCcc---CCCCCccCCCCCc-cccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccC
Confidence 2578999999985 3577777 79999 68999999999999999999999996 6899999887
Q ss_pred --CeEEEEecccccC------CCCCCeEEEEEEcCCc--eEEeEEecc
Q 002713 803 --GQLITLFSATNYC------GTANNAGAILVVGRGL--VVVPKLIHP 840 (889)
Q Consensus 803 --~~~itvfSa~~y~------~~~~n~ga~l~~~~~~--~~~~~~~~~ 840 (889)
++||||||||||| +.++|+||+++++.+- ...++.|..
T Consensus 318 ~~~~liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~~ 365 (377)
T cd07418 318 ESGKLITLFSAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFEA 365 (377)
T ss_pred CCCcEEEEecCCccccccccccccCcceEEEEEecCCCCCccceEeec
Confidence 9999999999999 5789999999997643 455555543
No 15
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-64 Score=499.13 Aligned_cols=286 Identities=41% Similarity=0.722 Sum_probs=270.3
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002713 535 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 614 (889)
Q Consensus 535 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g~~~~~~ 614 (889)
++.-|..|.+.+ ++++.++..||+.|+++|.+|.+|..++.|++||||+||||+||+++|+..|..++.
T Consensus 20 vd~~ie~L~~ck----------~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdt- 88 (319)
T KOG0371|consen 20 VDPWIEQLYKCK----------PLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDT- 88 (319)
T ss_pred cccchHHHHhcC----------CCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCc-
Confidence 466778887764 578889999999999999999999999999999999999999999999888887766
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002713 615 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 694 (889)
Q Consensus 615 ~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 694 (889)
+|+|+|||||||++|.|++.+|.++|++||++|.+||||||.+.+...|||++||++|||.. .+|+.|.+.|
T Consensus 89 -----nylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~a---nvw~~Ftdlf 160 (319)
T KOG0371|consen 89 -----NYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNA---NVWKYFTDLF 160 (319)
T ss_pred -----ceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccc---cchHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999864 6999999999
Q ss_pred CCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002713 695 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 774 (889)
Q Consensus 695 ~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 774 (889)
+++|+.|+|+++|||+|||++|++.+++.++.+.|-.+++.++ .+||||||||++ .-||..++||+| +.||.+..
T Consensus 161 dy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evpheg-pmcDlLwsdpdd---r~gwg~sprgag-~tfg~di~ 235 (319)
T KOG0371|consen 161 DYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEG-PMCDLLWSDPDD---RCGWGISPRGAG-YTFGQDIS 235 (319)
T ss_pred hccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCC-ChhheeccCccc---CCCCCCCCCCCC-cccchhhH
Confidence 9999999999999999999999999999999999988888877 688999999985 689999999999 79999999
Q ss_pred HHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCCCC
Q 002713 775 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 844 (889)
Q Consensus 775 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 844 (889)
++|-.+||+++|-|+||.+++||.+.+...++|||||||||+.++|.+|+|.+++.....+..|.|.|..
T Consensus 236 ~~fn~~n~lslisRahqlvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~d~~~~~~f~q~~psp~k 305 (319)
T KOG0371|consen 236 EQFNHKNGLSLISRAHQLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMERDDTKNYDFLQFDPSPRK 305 (319)
T ss_pred HHhhccCCchHhHHHHHHHhcccceeeecceeEEccCCchhhccccHHHHhhhhhccCcceEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986543
No 16
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=1.6e-63 Score=513.74 Aligned_cols=273 Identities=38% Similarity=0.665 Sum_probs=250.4
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHH
Q 002713 557 FLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLE 636 (889)
Q Consensus 557 ~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~e 636 (889)
.|+++..++|+.++..+|++|++++++++||.|||||||||.||+++|+..|-|... +|+|||||||||..|+|
T Consensus 60 rl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t------~YLFLGDYVDRGyFSiE 133 (517)
T KOG0375|consen 60 RLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANT------RYLFLGDYVDRGYFSIE 133 (517)
T ss_pred chhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccc------eeEeeccccccceeeee
Confidence 478999999999999999999999999999999999999999999999999888766 99999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhcCCCceEEEEcCeEEEecCCCCC
Q 002713 637 TITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGR 716 (889)
Q Consensus 637 vl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~i~~vHgGi~~ 716 (889)
|+.+|.+||+.||..++|||||||++.+...|.|..||+.+|.. .+|+.+.+.|++|||||+.++++||||||++|
T Consensus 134 CvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse----~vYdaCmesFd~LPLAAlmNqQflCVHGGlSP 209 (517)
T KOG0375|consen 134 CVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE----RVYDACMESFDCLPLAALMNQQFLCVHGGLSP 209 (517)
T ss_pred hHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccH----HHHHHHHHHhccchHHHHhcCceEEecCCCCc
Confidence 99999999999999999999999999999999999999999954 69999999999999999999999999999999
Q ss_pred CCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCC----CCCcccC-CCCCceEEeCHHHHHHHHHhcCCeEEEEecc
Q 002713 717 SIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDS----IEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHE 791 (889)
Q Consensus 717 ~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~----~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~ 791 (889)
.+.+++||++|.|..++|..+ .+||||||||.++.+ .+.|.+| .||++ |.|...++.+||+.|||--|||+||
T Consensus 210 Ei~tl~DIr~l~RF~EpPa~G-pmCDLLWsDPlEdfgnek~~e~f~hNsvRGCS-yfysy~A~C~FLq~nnLLSIiRAHE 287 (517)
T KOG0375|consen 210 EIHTLDDIRKLDRFKEPPAFG-PMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCS-YFYSYPAVCEFLQNNNLLSIIRAHE 287 (517)
T ss_pred ccccHHHHHhhhhccCCCccC-cchhhhccChhhhccccccccccccCcccccc-ceechHHHHHHHHhCCchhhhhhhh
Confidence 999999999999999999877 899999999987422 2456666 79999 7899999999999999999999999
Q ss_pred ccccceEEecCC------eEEEEecccccCCCCCCeEEEEEEcCCceEEeEEeccCC
Q 002713 792 CVMDGFERFAQG------QLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLP 842 (889)
Q Consensus 792 ~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~ 842 (889)
.+..||..+... .||||||||||-+.++|+||||..+++. +..+.|.-.|
T Consensus 288 AQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnNV-MNIRQFncSP 343 (517)
T KOG0375|consen 288 AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSP 343 (517)
T ss_pred hhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhccc-ceeeccCCCC
Confidence 999999876554 5899999999999999999999997764 3445554433
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-53 Score=446.77 Aligned_cols=284 Identities=33% Similarity=0.616 Sum_probs=250.2
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeec----CCeEEEecCCCCHHHHHHHHHHhCCC
Q 002713 535 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDEYGFP 610 (889)
Q Consensus 535 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~----~~i~vvGDiHG~~~~l~~il~~~g~~ 610 (889)
++.+|+.+-..+ .|....+..|+.+|+++|++-|++-+++ ..|.||||+||.++||+-||.+.|+|
T Consensus 121 i~~lieaFk~kq----------~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlP 190 (631)
T KOG0377|consen 121 IDLLIEAFKKKQ----------RLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLP 190 (631)
T ss_pred HHHHHHHHHHhh----------hccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCC
Confidence 466776654332 5788889999999999999999999985 46999999999999999999999999
Q ss_pred CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhh
Q 002713 611 STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRF 690 (889)
Q Consensus 611 ~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~ 690 (889)
+..+ .|||.||+||||.+|+|||++|+++.+.||..+||-|||||+..||..|||..|...+|... +..+...+
T Consensus 191 S~~n-----pYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~-~k~Ilr~l 264 (631)
T KOG0377|consen 191 SSSN-----PYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRH-GKRILRFL 264 (631)
T ss_pred CCCC-----CeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhc-ccHHHHHH
Confidence 9875 79999999999999999999999999999999999999999999999999999999999775 67788899
Q ss_pred hhhcCCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCC---------ccc--CC----------CCchhhccccCCCC
Q 002713 691 NQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERP---------ITM--DA----------GSIILMDLLWSDPT 749 (889)
Q Consensus 691 ~~~f~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp---------~~~--~~----------~~~~~~dllWsdP~ 749 (889)
.++|.|||++.+|+.+||+|||||+.. +.++-|.+|+|- ++. +. +-+-+.|+|||||.
T Consensus 265 eevy~WLPi~tiid~~ilvvHGGiSd~-Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~ 343 (631)
T KOG0377|consen 265 EEVYRWLPIGTIIDSRILVVHGGISDS-TDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQ 343 (631)
T ss_pred HHHHHhcchhhhcccceEEEecCcccc-hhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCcc
Confidence 999999999999999999999999976 677777777652 211 00 11357899999998
Q ss_pred CCCCCCCcccC-CCCCceEEeCHHHHHHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEc
Q 002713 750 ENDSIEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVG 828 (889)
Q Consensus 750 ~~~~~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~ 828 (889)
. ..|..|| -||.| ++||+|++.+||++++++++||+|||.++|||+.++++|+|||||+||.....|+||++.+.
T Consensus 344 ~---~~GC~pNt~RGgG-~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAYikl~ 419 (631)
T KOG0377|consen 344 A---TMGCVPNTLRGGG-CYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAYIKLG 419 (631)
T ss_pred c---ccCCCcccccCCc-ceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceEEEeC
Confidence 6 4688888 69999 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeEEec
Q 002713 829 RGLVVVPKLIH 839 (889)
Q Consensus 829 ~~~~~~~~~~~ 839 (889)
+.++-.|....
T Consensus 420 ~~~~PhfvQY~ 430 (631)
T KOG0377|consen 420 NQLTPHFVQYQ 430 (631)
T ss_pred CCCCchHHHHH
Confidence 98865554443
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=3.2e-47 Score=414.62 Aligned_cols=274 Identities=37% Similarity=0.655 Sum_probs=250.4
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceEeecC----CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCC
Q 002713 557 FLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ 632 (889)
Q Consensus 557 ~~~~~~~~~l~~~~~~~~~~e~~~l~~~~----~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~ 632 (889)
.|...-+..|+..+..++.++|+++++.. .+.|+||+||||.|++++|+..|.|+... .|+|.||+||||.
T Consensus 182 ~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~-----~ylfngdfv~rgs 256 (476)
T KOG0376|consen 182 KLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN-----PYLFNGDFVDRGS 256 (476)
T ss_pred ccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc-----cccccCceeeecc
Confidence 35556677899999999999999999875 48999999999999999999999998764 7999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhcCCCceEEEEcCeEEEecC
Q 002713 633 HSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHG 712 (889)
Q Consensus 633 ~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~i~~vHg 712 (889)
.|.|++..+++.|+.+|+++|++|||||...||..|||..|+..+|.+ ..+..+.++|.+||++.+|+++++.+||
T Consensus 257 ~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte----~~~~~f~~~f~~LPl~~~i~~~~~~~hg 332 (476)
T KOG0376|consen 257 WSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTE----EMFNLFSEVFIWLPLAHLINNKVLVMHG 332 (476)
T ss_pred cceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHH----HHHHhhhhhhccccchhhhcCceEEEec
Confidence 999999999999999999999999999999999999999999999965 4677777999999999999999999999
Q ss_pred CCCC-CCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcCCeEEEEecc
Q 002713 713 GIGR-SIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHE 791 (889)
Q Consensus 713 Gi~~-~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~ 791 (889)
|+.. .-.++++|++|.|+...+..+ .++|+|||||.. ..|..++.||.| ..||+|+.++||+.|++++|||+||
T Consensus 333 glf~~~~v~l~d~r~i~r~~~~~~~~-~~~~~lws~pq~---~~g~s~S~r~~g-~~fG~d~t~~f~~~n~l~~i~rshe 407 (476)
T KOG0376|consen 333 GLFSPDGVTLEDFRNIDRFEQPPEEG-LMCELLWSDPQP---ANGRSPSKRGVG-LQFGPDVTERFLQDNNLDKIIRSHE 407 (476)
T ss_pred CcCCCCCccHHHHHhhhhccCCcccc-cccccccCCCcc---ccCCCccccCce-eeeCCCchhhHHhhcchHHHhhccc
Confidence 9964 456899999999995555444 899999999986 478999999999 5899999999999999999999999
Q ss_pred ccccceEEecCCeEEEEecccccCCCCCCeEEEEEEc-CCceEEeEEeccCCCC
Q 002713 792 CVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVG-RGLVVVPKLIHPLPPP 844 (889)
Q Consensus 792 ~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~-~~~~~~~~~~~~~~~~ 844 (889)
+.+.||++.++|+|+|||||||||...+|.||++.++ ++++..+..|.++|-.
T Consensus 408 ~~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~ 461 (476)
T KOG0376|consen 408 VKDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHP 461 (476)
T ss_pred cCCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCC
Confidence 9999999999999999999999999999999999998 7788888888877654
No 19
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.7e-36 Score=349.29 Aligned_cols=307 Identities=22% Similarity=0.331 Sum_probs=241.5
Q ss_pred cceeecCC---CCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCC
Q 002713 17 ETYWDTDE---DAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA 93 (889)
Q Consensus 17 ~~~w~~~~---~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~ 93 (889)
.++|.... ++|.||.+|+++++ +++||||||....... ..+++|+||+.+++|+.++.+
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~~------~~~iyv~GG~~~~~~~------------~~~~v~~yD~~~~~W~~~~~~ 211 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQV------GNKIYSFGGEFTPNQP------------IDKHLYVFDLETRTWSISPAT 211 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEEE------CCEEEEECCcCCCCCC------------eeCcEEEEECCCCEEEeCCCC
Confidence 37898654 36899999999999 8899999997532211 358899999999999998877
Q ss_pred CCCCc-ccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecC
Q 002713 94 GEPPS-PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGN 172 (889)
Q Consensus 94 g~~P~-~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~ 172 (889)
+..|. .|.+|++++++++||++||... ...++++|+||+.++ +|+.+.+.+..|.+|++|+++++++ +|||+||.
T Consensus 212 g~~P~~~~~~~~~v~~~~~lYvfGG~~~-~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~h~~~~~~~-~iYv~GG~ 287 (470)
T PLN02193 212 GDVPHLSCLGVRMVSIGSTLYVFGGRDA-SRQYNGFYSFDTTTN--EWKLLTPVEEGPTPRSFHSMAADEE-NVYVFGGV 287 (470)
T ss_pred CCCCCCcccceEEEEECCEEEEECCCCC-CCCCccEEEEECCCC--EEEEcCcCCCCCCCccceEEEEECC-EEEEECCC
Confidence 76665 4679999999999999999863 346799999999995 5999866555689999999988776 89999999
Q ss_pred CCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCC
Q 002713 173 DGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP 252 (889)
Q Consensus 173 ~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~ 252 (889)
+....++++++||+.++ +|+.++..+..|.+|..|++++ .+++||++||.+. ..+++++.||+.++ +|+.....
T Consensus 288 ~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g--~~~~dv~~yD~~t~-~W~~~~~~ 361 (470)
T PLN02193 288 SATARLKTLDSYNIVDK--KWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNG--CEVDDVHYYDPVQD-KWTQVETF 361 (470)
T ss_pred CCCCCcceEEEEECCCC--EEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCC--CccCceEEEECCCC-EEEEeccC
Confidence 88888999999999999 9999987666778888877765 4678999999754 34799999999876 45444433
Q ss_pred CCCCCccceeEEEEECCEEEEEcCCCCCCC-----CccCCCcEEEEECCCCeEEeccCCccccCCCCCCCCCCCccCccc
Q 002713 253 GVAPSPRYQHAAVFVGARLHVTGGALRGGR-----AIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMR 327 (889)
Q Consensus 253 ~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~-----~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~ 327 (889)
+..|.+|..|+++.++++|||+||...... .....+++++||+.+++|+.+..+... ...|.+
T Consensus 362 g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~------------~~~P~~ 429 (470)
T PLN02193 362 GVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEE------------EETPSS 429 (470)
T ss_pred CCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCC------------CCCCCC
Confidence 556889999999999999999999853211 112357899999999999998765321 112447
Q ss_pred ccceEEE--EE-C-CEEEEEcCCCCCCCcccccccEEEccCCC
Q 002713 328 RCRHASA--SI-G-VRIYIYGGLKGAFCADILLDDFLVAENSP 366 (889)
Q Consensus 328 R~~h~~~--~v-~-~~lyv~GG~~~~~~~~~~~~d~~~l~~~~ 366 (889)
|..|+++ .+ + +.|++|||+.+. +..++|+|.++...
T Consensus 430 R~~~~~~~~~~~~~~~~~~fGG~~~~---~~~~~D~~~~~~~~ 469 (470)
T PLN02193 430 RGWTASTTGTIDGKKGLVMHGGKAPT---NDRFDDLFFYGIDS 469 (470)
T ss_pred CccccceeeEEcCCceEEEEcCCCCc---cccccceEEEecCC
Confidence 7666432 33 2 459999999762 67889999987553
No 20
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=8e-36 Score=333.85 Aligned_cols=307 Identities=22% Similarity=0.282 Sum_probs=231.5
Q ss_pred cccceeecCCC----CCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEe
Q 002713 15 TLETYWDTDED----APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRI 90 (889)
Q Consensus 15 ~~~~~w~~~~~----~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l 90 (889)
+....|..+.. +|.||.+|+++++ +++||||||...... ...+++|+||+.+++|+++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~------~~~iyv~GG~~~~~~------------~~~~~~~~yd~~~~~W~~~ 65 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVV------GDKLYSFGGELKPNE------------HIDKDLYVFDFNTHTWSIA 65 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEE------CCEEEEECCccCCCC------------ceeCcEEEEECCCCEEEEc
Confidence 34566886654 7999999999999 889999999864321 1468999999999999999
Q ss_pred cCCCCCCcc-cCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeec--CCCCCCccccEEEEECCcEEE
Q 002713 91 RPAGEPPSP-RAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ--GQGPGPRYGHVMDLVSQRYLV 167 (889)
Q Consensus 91 ~~~g~~P~~-R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~--g~~p~~R~~hs~~~~~~~~ly 167 (889)
++++..|.. +.+|++++++++||+|||... ...++++|+||+.++ +|+.+... ...|.+|.+|++++.++ +||
T Consensus 66 ~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~~~~~-~iy 141 (341)
T PLN02153 66 PANGDVPRISCLGVRMVAVGTKLYIFGGRDE-KREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMASDEN-HVY 141 (341)
T ss_pred CccCCCCCCccCceEEEEECCEEEEECCCCC-CCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEEEECC-EEE
Confidence 877655543 558999999999999999854 345789999999985 49988431 22388999999988776 899
Q ss_pred EEecCCCCc------ccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCC-------CCcccc
Q 002713 168 SVSGNDGKR------VLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS-------GAPLAD 234 (889)
Q Consensus 168 v~GG~~~~~------~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~-------~~~~~d 234 (889)
|+||.+... .++++++||+.++ +|..++.++..|.+|.+|++++ .+++|||+||.... ...+++
T Consensus 142 v~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~ 218 (341)
T PLN02153 142 VFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNA 218 (341)
T ss_pred EECCccCCCccCCCcccceEEEEECCCC--eEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCc
Confidence 999986432 4679999999999 9999998777778888887665 56789999986421 123678
Q ss_pred eEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCC-----CCccCCCcEEEEECCCCeEEeccCCccc
Q 002713 235 AYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGG-----RAIEGEAAVAVLDTAAGVWLDRNGLVTS 309 (889)
Q Consensus 235 v~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~-----~~~~~~~~v~~yD~~t~~W~~v~~~~~~ 309 (889)
++.||+.++ +|+.....+..|.+|..|++++++++|||+||..... ......+++++||+++++|+.+.....
T Consensus 219 v~~yd~~~~-~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~- 296 (341)
T PLN02153 219 VQFFDPASG-KWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGE- 296 (341)
T ss_pred eEEEEcCCC-cEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCC-
Confidence 999999877 4443333345688999999999999999999974211 011125689999999999998864321
Q ss_pred cCCCCCCCCCCCccCcccccceEEEEE--CCEEEEEcCCCCCCCcccccccEEEcc
Q 002713 310 SRTSKGHGEHDPSLELMRRCRHASASI--GVRIYIYGGLKGAFCADILLDDFLVAE 363 (889)
Q Consensus 310 ~~~~~~~~~~~~~~~p~~R~~h~~~~v--~~~lyv~GG~~~~~~~~~~~~d~~~l~ 363 (889)
.+.|..|..++++.+ +++||||||.++. +..++|+|.+.
T Consensus 297 ------------~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~---~~~~~~~~~~~ 337 (341)
T PLN02153 297 ------------PAMPRGWTAYTTATVYGKNGLLMHGGKLPT---NERTDDLYFYA 337 (341)
T ss_pred ------------CCCCCccccccccccCCcceEEEEcCcCCC---CccccceEEEe
Confidence 112345555555554 3489999998773 47788988764
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.2e-35 Score=294.64 Aligned_cols=291 Identities=24% Similarity=0.379 Sum_probs=239.0
Q ss_pred eeecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCC-----
Q 002713 19 YWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA----- 93 (889)
Q Consensus 19 ~w~~~~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~----- 93 (889)
.|+.-=+--..|.+|+++++ |.+||-|||+-....-.. .-.=|+++++..+.+|+++++.
T Consensus 3 ~WTVHLeGGPrRVNHAavaV------G~riYSFGGYCsGedy~~---------~~piDVH~lNa~~~RWtk~pp~~~ka~ 67 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAV------GSRIYSFGGYCSGEDYDA---------KDPIDVHVLNAENYRWTKMPPGITKAT 67 (392)
T ss_pred eEEEEecCCcccccceeeee------cceEEecCCccccccccc---------CCcceeEEeeccceeEEecCccccccc
Confidence 46644333456899999999 899999999975432110 0123899999999999999873
Q ss_pred -----CCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEE
Q 002713 94 -----GEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVS 168 (889)
Q Consensus 94 -----g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv 168 (889)
...|-.|++|+.+.+++++|+.||.++.....+-+|+||+++ .+|.+....|-.|.+|.+|+++++++ .+||
T Consensus 68 i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t--~~W~~p~v~G~vPgaRDGHsAcV~gn-~Myi 144 (392)
T KOG4693|consen 68 IESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPET--NVWKKPEVEGFVPGARDGHSACVWGN-QMYI 144 (392)
T ss_pred ccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeecccc--ccccccceeeecCCccCCceeeEECc-EEEE
Confidence 124567999999999999999999988777889999999999 55999999999999999999999998 8999
Q ss_pred EecCCC--CcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCC--------CcccceEEE
Q 002713 169 VSGNDG--KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG--------APLADAYGL 238 (889)
Q Consensus 169 ~GG~~~--~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~--------~~~~dv~~l 238 (889)
|||+.. +...+|++.+|+.|. +|..+...+.+|.-|.+|+++++. +++|||||+.... ...+.+..|
T Consensus 145 FGGye~~a~~FS~d~h~ld~~Tm--tWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~l 221 (392)
T KOG4693|consen 145 FGGYEEDAQRFSQDTHVLDFATM--TWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMAL 221 (392)
T ss_pred ecChHHHHHhhhccceeEeccce--eeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEE
Confidence 999854 567899999999999 999999999999999999988755 8999999985442 223445566
Q ss_pred ecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccCCccccCCCCCCCC
Q 002713 239 LMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGE 318 (889)
Q Consensus 239 ~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~ 318 (889)
|..+ +.|.-....++.|.+|..|++.+++++||+|||+++.... -.+++|.||+.|..|..+..-..-
T Consensus 222 d~~T-~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~--HfndLy~FdP~t~~W~~I~~~Gk~--------- 289 (392)
T KOG4693|consen 222 DLAT-GAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV--HFNDLYCFDPKTSMWSVISVRGKY--------- 289 (392)
T ss_pred eccc-cccccCCCCCcCCCcccccceEEEcceEEEecccchhhhh--hhcceeecccccchheeeeccCCC---------
Confidence 6654 4666665667889999999999999999999999765432 268999999999999998765442
Q ss_pred CCCccCcccccceEEEEECCEEEEEcCCCC
Q 002713 319 HDPSLELMRRCRHASASIGVRIYIYGGLKG 348 (889)
Q Consensus 319 ~~~~~~p~~R~~h~~~~v~~~lyv~GG~~~ 348 (889)
|.+|.++++++.++++|+|||..-
T Consensus 290 ------P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 290 ------PSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ------CCcccceeEEEECCEEEEecCCCC
Confidence 569999999999999999999443
No 22
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=6.3e-34 Score=305.90 Aligned_cols=309 Identities=26% Similarity=0.451 Sum_probs=257.7
Q ss_pred cCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccC
Q 002713 22 TDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRA 101 (889)
Q Consensus 22 ~~~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~P~~R~ 101 (889)
..++.|.||.||.++++ +.-|+||||... ++.+++++|+..+++|..-...|+.|++.+
T Consensus 25 ~tGPvPrpRHGHRAVai------kELiviFGGGNE---------------GiiDELHvYNTatnqWf~PavrGDiPpgcA 83 (830)
T KOG4152|consen 25 STGPVPRPRHGHRAVAI------KELIVIFGGGNE---------------GIIDELHVYNTATNQWFAPAVRGDIPPGCA 83 (830)
T ss_pred ccCCCCCccccchheee------eeeEEEecCCcc---------------cchhhhhhhccccceeecchhcCCCCCchh
Confidence 45678999999999999 778999999642 368999999999999999999999999999
Q ss_pred ccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEee----cCCCCCCccccEEEEECCcEEEEEecCCC---
Q 002713 102 AHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVV----QGQGPGPRYGHVMDLVSQRYLVSVSGNDG--- 174 (889)
Q Consensus 102 ~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~----~g~~p~~R~~hs~~~~~~~~lyv~GG~~~--- 174 (889)
+|+.++.+.+||+|||+.+-+.+++|+|.+.-+. |.|+++.+ .|.+|.+|.+|+.+++++ +.|+|||...
T Consensus 84 A~GfvcdGtrilvFGGMvEYGkYsNdLYELQasR--WeWkrlkp~~p~nG~pPCPRlGHSFsl~gn-KcYlFGGLaNdse 160 (830)
T KOG4152|consen 84 AFGFVCDGTRILVFGGMVEYGKYSNDLYELQASR--WEWKRLKPKTPKNGPPPCPRLGHSFSLVGN-KCYLFGGLANDSE 160 (830)
T ss_pred hcceEecCceEEEEccEeeeccccchHHHhhhhh--hhHhhcCCCCCCCCCCCCCccCceeEEecc-EeEEecccccccc
Confidence 9999999999999999988899999987766655 88999864 588999999999999996 8999999632
Q ss_pred ------CcccCcEEEEecCC--CCceEEEccCCCCCCCcccceEEEEec-----CCEEEEEccCCCCCCcccceEEEecc
Q 002713 175 ------KRVLSDAWALDTAQ--KPYVWQRLNPEGDRPSARMYATASARS-----DGMFLLCGGRDASGAPLADAYGLLMH 241 (889)
Q Consensus 175 ------~~~lndv~~yd~~t--~~~~W~~v~~~~~~P~~r~~~~a~~~~-----~~~l~v~GG~~~~~~~~~dv~~l~~~ 241 (889)
-+++||+|.+++.- +-..|...-..|..|.+|-.|+|+++. ..+|||+||..+ ..+.|+|.+|.+
T Consensus 161 DpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--~RLgDLW~Ldl~ 238 (830)
T KOG4152|consen 161 DPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--CRLGDLWTLDLD 238 (830)
T ss_pred CcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--ccccceeEEecc
Confidence 24799999999874 335799988889999999999999882 348999999754 469999999998
Q ss_pred cCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCC---C-------CCCccCCCcEEEEECCCCeEEeccCCccccC
Q 002713 242 RNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALR---G-------GRAIEGEAAVAVLDTAAGVWLDRNGLVTSSR 311 (889)
Q Consensus 242 ~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~---~-------~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~ 311 (889)
+- .|...+..+..|.||.-|++..+|++||||||..- . ...-...+++-++++++..|..+-.....
T Consensus 239 Tl-~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~e-- 315 (830)
T KOG4152|consen 239 TL-TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLE-- 315 (830)
T ss_pred ee-ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccc--
Confidence 65 77777788999999999999999999999999741 0 01111267889999999999987654211
Q ss_pred CCCCCCCCCCccCcccccceEEEEECCEEEEEcCCCC---CCCcccccccEEEccCCCCC
Q 002713 312 TSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG---AFCADILLDDFLVAENSPFQ 368 (889)
Q Consensus 312 ~~~~~~~~~~~~~p~~R~~h~~~~v~~~lyv~GG~~~---~~~~~~~~~d~~~l~~~~~~ 368 (889)
..-.|++|.+|++++++.+|||..|.+| +|.+..-+.|+|.||+..-+
T Consensus 316 ---------d~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp 366 (830)
T KOG4152|consen 316 ---------DNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPP 366 (830)
T ss_pred ---------ccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCCC
Confidence 1124789999999999999999999888 45666778899999976533
No 23
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=8.8e-32 Score=312.68 Aligned_cols=281 Identities=23% Similarity=0.334 Sum_probs=223.2
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCc--EEEEECCC----CcEEEecCCCCCCcccCccEEEEECCEEEEEcCc
Q 002713 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNS--VHLYDVLT----RKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGI 118 (889)
Q Consensus 45 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~nd--v~~yD~~t----~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~ 118 (889)
+++|+.|+|..... .+. +|++++.+ ++|.++.+.+..|.||++|++++++++||++||.
T Consensus 120 ~~~ivgf~G~~~~~---------------~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~ 184 (470)
T PLN02193 120 GGKIVGFHGRSTDV---------------LHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGE 184 (470)
T ss_pred CCeEEEEeccCCCc---------------EEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCc
Confidence 88999999986432 343 45557655 7999999888889999999999999999999997
Q ss_pred CC-CCCccCcEEEEEccCCceEEEEEeecCCCCC-CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEc
Q 002713 119 GP-AGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL 196 (889)
Q Consensus 119 ~~-~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~-~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v 196 (889)
.. .....+++|+||+.+++ |..+...++.|. +|.+|+++++++ .||||||.+....++++|+||+.++ +|+++
T Consensus 185 ~~~~~~~~~~v~~yD~~~~~--W~~~~~~g~~P~~~~~~~~~v~~~~-~lYvfGG~~~~~~~ndv~~yD~~t~--~W~~l 259 (470)
T PLN02193 185 FTPNQPIDKHLYVFDLETRT--WSISPATGDVPHLSCLGVRMVSIGS-TLYVFGGRDASRQYNGFYSFDTTTN--EWKLL 259 (470)
T ss_pred CCCCCCeeCcEEEEECCCCE--EEeCCCCCCCCCCcccceEEEEECC-EEEEECCCCCCCCCccEEEEECCCC--EEEEc
Confidence 53 23355789999999954 998866666665 467888888886 8999999988788999999999999 99999
Q ss_pred cCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcC
Q 002713 197 NPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGG 276 (889)
Q Consensus 197 ~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG 276 (889)
++++..|.+|.+|++++ .+++|||+||.+... .+++++.|++.++ +|+....++..|.+|.+|++++++++|||+||
T Consensus 260 ~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~-~~~~~~~yd~~t~-~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG 336 (470)
T PLN02193 260 TPVEEGPTPRSFHSMAA-DEENVYVFGGVSATA-RLKTLDSYNIVDK-KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYG 336 (470)
T ss_pred CcCCCCCCCccceEEEE-ECCEEEEECCCCCCC-CcceEEEEECCCC-EEEeCCCCCCCCCCCCCcEEEEECCcEEEEEC
Confidence 88777789998888765 577999999986654 4789999999876 44433333445789999999999999999999
Q ss_pred CCCCCCCccCCCcEEEEECCCCeEEeccCCccccCCCCCCCCCCCccCcccccceEEEEECCEEEEEcCCCCCC-----C
Q 002713 277 ALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGAF-----C 351 (889)
Q Consensus 277 ~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~h~~~~v~~~lyv~GG~~~~~-----~ 351 (889)
..+. ..+++++||+.+++|+++..+... |.+|..|++++++++||||||..... .
T Consensus 337 ~~g~-----~~~dv~~yD~~t~~W~~~~~~g~~---------------P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 396 (470)
T PLN02193 337 FNGC-----EVDDVHYYDPVQDKWTQVETFGVR---------------PSERSVFASAAVGKHIVIFGGEIAMDPLAHVG 396 (470)
T ss_pred CCCC-----ccCceEEEECCCCEEEEeccCCCC---------------CCCcceeEEEEECCEEEEECCccCCccccccC
Confidence 7532 158899999999999998765321 45899999999999999999975421 1
Q ss_pred cccccccEEEccCCCCC
Q 002713 352 ADILLDDFLVAENSPFQ 368 (889)
Q Consensus 352 ~~~~~~d~~~l~~~~~~ 368 (889)
.....+|++.++.....
T Consensus 397 ~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 397 PGQLTDGTFALDTETLQ 413 (470)
T ss_pred ccceeccEEEEEcCcCE
Confidence 12356788888766544
No 24
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=321.40 Aligned_cols=266 Identities=22% Similarity=0.351 Sum_probs=231.9
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCc
Q 002713 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (889)
Q Consensus 45 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~ 124 (889)
.+.||++||...... ..+.+..||+.+++|..+.. +|.+|..+++++++++||++||++.+...
T Consensus 284 ~~~l~~vGG~~~~~~-------------~~~~ve~yd~~~~~w~~~a~---m~~~r~~~~~~~~~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQ-------------SLRSVECYDPKTNEWSSLAP---MPSPRCRVGVAVLNGKLYVVGGYDSGSDR 347 (571)
T ss_pred CCeEEEECCCCCCCc-------------ccceeEEecCCcCcEeecCC---CCcccccccEEEECCEEEEEccccCCCcc
Confidence 568999999975221 58899999999999998884 45899999999999999999998655678
Q ss_pred cCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCC
Q 002713 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (889)
Q Consensus 125 ~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~ 204 (889)
++.+|+||+.+++ |..+ .+|+.+|.+|+++++++ .||++||.++...++++++||+.++ +|+.++++ +.
T Consensus 348 l~~ve~YD~~~~~--W~~~---a~M~~~R~~~~v~~l~g-~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m---~~ 416 (571)
T KOG4441|consen 348 LSSVERYDPRTNQ--WTPV---APMNTKRSDFGVAVLDG-KLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPM---LT 416 (571)
T ss_pred cceEEEecCCCCc--eecc---CCccCccccceeEEECC-EEEEEeccccccccccEEEecCCCC--cccccCCC---Cc
Confidence 8999999999966 9998 89999999999999997 9999999999999999999999999 99999887 45
Q ss_pred cccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCc
Q 002713 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (889)
Q Consensus 205 ~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~ 284 (889)
+| +.++++..+++||++||.+.....++.+.+||+.++ +|...+.+ +.+|.+|++++++++||++||.++...
T Consensus 417 ~r-~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M-~~~R~~~g~a~~~~~iYvvGG~~~~~~-- 489 (571)
T KOG4441|consen 417 RR-SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPM-NTRRSGFGVAVLNGKIYVVGGFDGTSA-- 489 (571)
T ss_pred ce-eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC---ceeecCCc-ccccccceEEEECCEEEEECCccCCCc--
Confidence 44 556666788899999999888768999999999999 99999888 799999999999999999999877222
Q ss_pred cCCCcEEEEECCCCeEEeccCCccccCCCCCCCCCCCccCcccccceEEEEECCEEEEEcCCCCC------CCccccccc
Q 002713 285 EGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGA------FCADILLDD 358 (889)
Q Consensus 285 ~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~h~~~~v~~~lyv~GG~~~~------~~~~~~~~d 358 (889)
..+++.||+++++|+.+..+.. +|..+++++++++||++||+++. .+|++..|.
T Consensus 490 --~~~VE~ydp~~~~W~~v~~m~~------------------~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 490 --LSSVERYDPETNQWTMVAPMTS------------------PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred --cceEEEEcCCCCceeEcccCcc------------------ccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 5679999999999999988844 99999999999999999998873 456666666
Q ss_pred EEEccC
Q 002713 359 FLVAEN 364 (889)
Q Consensus 359 ~~~l~~ 364 (889)
|.....
T Consensus 550 W~~~~~ 555 (571)
T KOG4441|consen 550 WTEVTE 555 (571)
T ss_pred eeeCCC
Confidence 665544
No 25
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.6e-32 Score=319.91 Aligned_cols=256 Identities=23% Similarity=0.397 Sum_probs=227.0
Q ss_pred CCCCCCCcccccceeecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCC-CCCCCCCCCCCccccccCCcEEEEECCC
Q 002713 6 WLHPAPSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATA-IEGGATSSAPGIRLAGVTNSVHLYDVLT 84 (889)
Q Consensus 6 ~~~~~~~yd~~~~~w~~~~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~-~~~~~~~~~~~~~~~~~~ndv~~yD~~t 84 (889)
....+.+||+.++.|...+++|.+|..|+++++ +++||++||... .. ..+++++||+.+
T Consensus 299 ~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~------~~~lYv~GG~~~~~~--------------~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 299 SLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL------NGKLYVVGGYDSGSD--------------RLSSVERYDPRT 358 (571)
T ss_pred ccceeEEecCCcCcEeecCCCCcccccccEEEE------CCEEEEEccccCCCc--------------ccceEEEecCCC
Confidence 345678999999999999999999999999999 899999999984 22 589999999999
Q ss_pred CcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCc
Q 002713 85 RKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQR 164 (889)
Q Consensus 85 ~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~ 164 (889)
++|+.+++|. .+|..|+++++++.||++||.. +...++.+++||+.+++ |..+ ++++.+|++|+++++++
T Consensus 359 ~~W~~~a~M~---~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~YDp~~~~--W~~v---a~m~~~r~~~gv~~~~g- 428 (571)
T KOG4441|consen 359 NQWTPVAPMN---TKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECYDPVTNK--WTPV---APMLTRRSGHGVAVLGG- 428 (571)
T ss_pred CceeccCCcc---CccccceeEEECCEEEEEeccc-cccccccEEEecCCCCc--cccc---CCCCcceeeeEEEEECC-
Confidence 9999988665 8999999999999999999986 56688999999999965 9999 88999999999988886
Q ss_pred EEEEEecCCCCc-ccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccC
Q 002713 165 YLVSVSGNDGKR-VLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN 243 (889)
Q Consensus 165 ~lyv~GG~~~~~-~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~ 243 (889)
+||++||.++.. +++.+.+||+.++ +|+.++++ +.+|.++. ++..+++||++||.+. ...+..+..||+.++
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M---~~~R~~~g-~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPM---NTRRSGFG-VAVLNGKIYVVGGFDG-TSALSSVERYDPETN 501 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCC--ceeecCCc---ccccccce-EEEECCEEEEECCccC-CCccceEEEEcCCCC
Confidence 999999999888 9999999999999 99999988 56776666 5567889999999988 445777999999988
Q ss_pred CeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccCC
Q 002713 244 GQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (889)
Q Consensus 244 ~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (889)
+|..+..+ +.+|..++++.+++++|++||+.+... +++++.||+++++|+....+
T Consensus 502 ---~W~~v~~m-~~~rs~~g~~~~~~~ly~vGG~~~~~~----l~~ve~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 502 ---QWTMVAPM-TSPRSAVGVVVLGGKLYAVGGFDGNNN----LNTVECYDPETDTWTEVTEP 556 (571)
T ss_pred ---ceeEcccC-ccccccccEEEECCEEEEEecccCccc----cceeEEcCCCCCceeeCCCc
Confidence 88888655 689999999999999999999776554 88999999999999999883
No 26
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.7e-31 Score=298.02 Aligned_cols=280 Identities=21% Similarity=0.291 Sum_probs=210.0
Q ss_pred CCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEEC--CCCcEEEecCCCCCC-ccc
Q 002713 24 EDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDV--LTRKWTRIRPAGEPP-SPR 100 (889)
Q Consensus 24 ~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~--~t~~W~~l~~~g~~P-~~R 100 (889)
+++|.+|..++++++ +++|||+||.. .+++|+||+ .+++|.+++.+ | .+|
T Consensus 2 ~~lp~~~~~~~~~~~------~~~vyv~GG~~------------------~~~~~~~d~~~~~~~W~~l~~~---p~~~R 54 (346)
T TIGR03547 2 PDLPVGFKNGTGAII------GDKVYVGLGSA------------------GTSWYKLDLKKPSKGWQKIADF---PGGPR 54 (346)
T ss_pred CCCCccccCceEEEE------CCEEEEEcccc------------------CCeeEEEECCCCCCCceECCCC---CCCCc
Confidence 568999999998899 89999999963 357899997 56899988744 4 479
Q ss_pred CccEEEEECCEEEEEcCcCCCC-----CccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCC
Q 002713 101 AAHAAAAVGTMVVFQGGIGPAG-----HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGK 175 (889)
Q Consensus 101 ~~haa~~~~~~Iyv~GG~~~~~-----~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~ 175 (889)
..|++++++++||++||..... ..++++|+||+.+++ |+.+. ..+|.+|.+|+++...+++||++||.+..
T Consensus 55 ~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~--W~~~~--~~~p~~~~~~~~~~~~~g~IYviGG~~~~ 130 (346)
T TIGR03547 55 NQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS--WQKLD--TRSPVGLLGASGFSLHNGQAYFTGGVNKN 130 (346)
T ss_pred ccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE--EecCC--CCCCCcccceeEEEEeCCEEEEEcCcChH
Confidence 9999999999999999985322 246899999999955 99984 24677788888874455699999998642
Q ss_pred c----------------------------------ccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEE
Q 002713 176 R----------------------------------VLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLL 221 (889)
Q Consensus 176 ~----------------------------------~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v 221 (889)
. .++++++||+.++ +|+.++++ |.+++.+++++..+++|||
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--~W~~~~~~---p~~~r~~~~~~~~~~~iyv 205 (346)
T TIGR03547 131 IFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--QWRNLGEN---PFLGTAGSAIVHKGNKLLL 205 (346)
T ss_pred HHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--ceeECccC---CCCcCCCceEEEECCEEEE
Confidence 1 2478999999999 99999765 5433344555567889999
Q ss_pred EccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCcc-------ceeEEEEECCEEEEEcCCCCCCCC-----------
Q 002713 222 CGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPR-------YQHAAVFVGARLHVTGGALRGGRA----------- 283 (889)
Q Consensus 222 ~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R-------~~hs~~~~~~~lyV~GG~~~~~~~----------- 283 (889)
+||....+....+++.|+...+ ..+|...+.+ |.+| .+|++++++++|||+||.......
T Consensus 206 ~GG~~~~~~~~~~~~~y~~~~~-~~~W~~~~~m-~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 283 (346)
T TIGR03547 206 INGEIKPGLRTAEVKQYLFTGG-KLEWNKLPPL-PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAH 283 (346)
T ss_pred EeeeeCCCccchheEEEEecCC-CceeeecCCC-CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCcccc
Confidence 9998655433456666664211 2367777665 3443 567788899999999998532210
Q ss_pred --ccCCCcEEEEECCCCeEEeccCCccccCCCCCCCCCCCccCcccccceEEEEECCEEEEEcCCCCCCCcccccccEEE
Q 002713 284 --IEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGAFCADILLDDFLV 361 (889)
Q Consensus 284 --~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~h~~~~v~~~lyv~GG~~~~~~~~~~~~d~~~ 361 (889)
......+++||+++++|+.+..++. +|..+++++++++|||+||.+.. +..++|++.
T Consensus 284 ~~~~~~~~~e~yd~~~~~W~~~~~lp~------------------~~~~~~~~~~~~~iyv~GG~~~~---~~~~~~v~~ 342 (346)
T TIGR03547 284 EGLIKAWSSEVYALDNGKWSKVGKLPQ------------------GLAYGVSVSWNNGVLLIGGENSG---GKAVTDVYL 342 (346)
T ss_pred CCCCceeEeeEEEecCCcccccCCCCC------------------CceeeEEEEcCCEEEEEeccCCC---CCEeeeEEE
Confidence 0112468999999999999988844 88888888999999999998652 456777765
Q ss_pred c
Q 002713 362 A 362 (889)
Q Consensus 362 l 362 (889)
+
T Consensus 343 ~ 343 (346)
T TIGR03547 343 L 343 (346)
T ss_pred E
Confidence 4
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=273.94 Aligned_cols=227 Identities=24% Similarity=0.407 Sum_probs=203.1
Q ss_pred CCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccCccEE
Q 002713 26 APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAA 105 (889)
Q Consensus 26 ~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa 105 (889)
.|..|+||+.+.+ .+++||+||...+.+ .-|.+|+||+++++|.+....|..|.+|.+|++
T Consensus 75 VPyqRYGHtvV~y------~d~~yvWGGRND~eg-------------aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsA 135 (392)
T KOG4693|consen 75 VPYQRYGHTVVEY------QDKAYVWGGRNDDEG-------------ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSA 135 (392)
T ss_pred cchhhcCceEEEE------cceEEEEcCccCccc-------------ccceeeeeccccccccccceeeecCCccCCcee
Confidence 5778999999999 999999999976554 589999999999999999999999999999999
Q ss_pred EEECCEEEEEcCcC-CCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCC---------
Q 002713 106 AAVGTMVVFQGGIG-PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGK--------- 175 (889)
Q Consensus 106 ~~~~~~Iyv~GG~~-~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~--------- 175 (889)
|++++.+|||||+. .....++|++.+|+++ ++|+.+.+.|.+|.-|..|++++++. .+|||||+...
T Consensus 136 cV~gn~MyiFGGye~~a~~FS~d~h~ld~~T--mtWr~~~Tkg~PprwRDFH~a~~~~~-~MYiFGGR~D~~gpfHs~~e 212 (392)
T KOG4693|consen 136 CVWGNQMYIFGGYEEDAQRFSQDTHVLDFAT--MTWREMHTKGDPPRWRDFHTASVIDG-MMYIFGGRSDESGPFHSIHE 212 (392)
T ss_pred eEECcEEEEecChHHHHHhhhccceeEeccc--eeeeehhccCCCchhhhhhhhhhccc-eEEEeccccccCCCccchhh
Confidence 99999999999986 3456789999999999 77999999999999999999999995 99999998532
Q ss_pred cccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCC-CCcccceEEEecccCCeeEEEeCCCC
Q 002713 176 RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS-GAPLADAYGLLMHRNGQWEWTLAPGV 254 (889)
Q Consensus 176 ~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~-~~~~~dv~~l~~~~~~~W~w~~~~~~ 254 (889)
.+.+.+..+|+.|. .|...++..-.|..|+.|++.+ .|++||+|||++.. +..++|+|+||+.+. .|..+...+.
T Consensus 213 ~Yc~~i~~ld~~T~--aW~r~p~~~~~P~GRRSHS~fv-Yng~~Y~FGGYng~ln~HfndLy~FdP~t~-~W~~I~~~Gk 288 (392)
T KOG4693|consen 213 QYCDTIMALDLATG--AWTRTPENTMKPGGRRSHSTFV-YNGKMYMFGGYNGTLNVHFNDLYCFDPKTS-MWSVISVRGK 288 (392)
T ss_pred hhcceeEEEecccc--ccccCCCCCcCCCcccccceEE-EcceEEEecccchhhhhhhcceeecccccc-hheeeeccCC
Confidence 34678888999999 9999988888899999999986 56699999999765 356899999999866 8888888899
Q ss_pred CCCccceeEEEEECCEEEEEcCCC
Q 002713 255 APSPRYQHAAVFVGARLHVTGGAL 278 (889)
Q Consensus 255 ~p~~R~~hs~~~~~~~lyV~GG~~ 278 (889)
.|.+|..+++++.++++|+|||..
T Consensus 289 ~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 289 YPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred CCCcccceeEEEECCEEEEecCCC
Confidence 999999999999999999999975
No 28
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.2e-31 Score=312.14 Aligned_cols=250 Identities=13% Similarity=0.140 Sum_probs=212.4
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCc
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R 153 (889)
...+++||+.+++|..+++ +|.+|..|++++++++||++||........+++|+||+.+++ |..+ .++|.+|
T Consensus 271 ~~~v~~yd~~~~~W~~l~~---mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~---~~m~~~R 342 (557)
T PHA02713 271 NPCILVYNINTMEYSVIST---IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI--HVEL---PPMIKNR 342 (557)
T ss_pred CCCEEEEeCCCCeEEECCC---CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe--EeeC---CCCcchh
Confidence 3578999999999998874 558899999999999999999975444567899999999955 9888 7899999
Q ss_pred cccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCC----
Q 002713 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG---- 229 (889)
Q Consensus 154 ~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~---- 229 (889)
.+|+++++++ +||++||.++...++++++||+.++ +|+.++++ |.+|..+++++ .+++||++||.+...
T Consensus 343 ~~~~~~~~~g-~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~m---p~~r~~~~~~~-~~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 343 CRFSLAVIDD-TIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDM---PIALSSYGMCV-LDQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred hceeEEEECC-EEEEECCcCCCCCCceEEEEECCCC--eEEECCCC---CcccccccEEE-ECCEEEEEeCCCccccccc
Confidence 9999988886 9999999988778899999999999 99999876 77887776664 578999999986432
Q ss_pred -------------CcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECC
Q 002713 230 -------------APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTA 296 (889)
Q Consensus 230 -------------~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~ 296 (889)
..++.+++||+.++ +|..++.+ +.+|..+++++++++|||+||..+... ..+.+++||++
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td---~W~~v~~m-~~~r~~~~~~~~~~~IYv~GG~~~~~~---~~~~ve~Ydp~ 488 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNN---IWETLPNF-WTGTIRPGVVSHKDDIYVVCDIKDEKN---VKTCIFRYNTN 488 (557)
T ss_pred ccccccccccccccccceEEEECCCCC---eEeecCCC-CcccccCcEEEECCEEEEEeCCCCCCc---cceeEEEecCC
Confidence 12578999999988 78888766 789999999999999999999764321 13568999999
Q ss_pred C-CeEEeccCCccccCCCCCCCCCCCccCcccccceEEEEECCEEEEEcCCCC---CCCcccccccEEEcc
Q 002713 297 A-GVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG---AFCADILLDDFLVAE 363 (889)
Q Consensus 297 t-~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~h~~~~v~~~lyv~GG~~~---~~~~~~~~~d~~~l~ 363 (889)
+ ++|+.++.++. +|..+++++++++||++||+++ +++|++..+.|..+-
T Consensus 489 ~~~~W~~~~~m~~------------------~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 489 TYNGWELITTTES------------------RLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred CCCCeeEccccCc------------------ccccceeEEECCEEEEEeeecceeehhhcCcccccccchh
Confidence 9 89999998844 9999999999999999999888 678888888888654
No 29
>PHA02713 hypothetical protein; Provisional
Probab=99.98 E-value=2.3e-31 Score=314.32 Aligned_cols=251 Identities=12% Similarity=0.125 Sum_probs=210.8
Q ss_pred CCCcccccceeecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEE
Q 002713 10 APSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTR 89 (889)
Q Consensus 10 ~~~yd~~~~~w~~~~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~ 89 (889)
..+||+.+++|...+++|.+|.+|+++++ +++|||+||...... ..+++++||+.+++|..
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~l------~~~IYviGG~~~~~~-------------~~~~v~~Yd~~~n~W~~ 334 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHIINYASAIV------DNEIIIAGGYNFNNP-------------SLNKVYKINIENKIHVE 334 (557)
T ss_pred EEEEeCCCCeEEECCCCCccccceEEEEE------CCEEEEEcCCCCCCC-------------ccceEEEEECCCCeEee
Confidence 45799999999999999999999999999 899999999752211 37899999999999998
Q ss_pred ecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEE
Q 002713 90 IRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSV 169 (889)
Q Consensus 90 l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~ 169 (889)
+++ +|.+|..|++++++++||++||.. +....+++++||+.+++ |..+ .++|.+|.+|+++++++ +||++
T Consensus 335 ~~~---m~~~R~~~~~~~~~g~IYviGG~~-~~~~~~sve~Ydp~~~~--W~~~---~~mp~~r~~~~~~~~~g-~IYvi 404 (557)
T PHA02713 335 LPP---MIKNRCRFSLAVIDDTIYAIGGQN-GTNVERTIECYTMGDDK--WKML---PDMPIALSSYGMCVLDQ-YIYII 404 (557)
T ss_pred CCC---CcchhhceeEEEECCEEEEECCcC-CCCCCceEEEEECCCCe--EEEC---CCCCcccccccEEEECC-EEEEE
Confidence 874 458999999999999999999975 33457889999999965 9988 78999999999988875 99999
Q ss_pred ecCCCC------------------cccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCc
Q 002713 170 SGNDGK------------------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 231 (889)
Q Consensus 170 GG~~~~------------------~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~ 231 (889)
||.++. ..++.+++||+.++ +|+.++++ |.+|..++++ ..+++||++||.+.....
T Consensus 405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m---~~~r~~~~~~-~~~~~IYv~GG~~~~~~~ 478 (557)
T PHA02713 405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNF---WTGTIRPGVV-SHKDDIYVVCDIKDEKNV 478 (557)
T ss_pred eCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCC---CcccccCcEE-EECCEEEEEeCCCCCCcc
Confidence 998642 13688999999999 99999876 6777666555 567799999998654333
Q ss_pred ccceEEEeccc-CCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccCC
Q 002713 232 LADAYGLLMHR-NGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (889)
Q Consensus 232 ~~dv~~l~~~~-~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (889)
.+.+++||+.+ + +|...+.+ |.+|..+++++++++||++||+.+ ..++++||+.|++|+.+.+.
T Consensus 479 ~~~ve~Ydp~~~~---~W~~~~~m-~~~r~~~~~~~~~~~iyv~Gg~~~-------~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 479 KTCIFRYNTNTYN---GWELITTT-ESRLSALHTILHDNTIMMLHCYES-------YMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred ceeEEEecCCCCC---CeeEcccc-CcccccceeEEECCEEEEEeeecc-------eeehhhcCcccccccchhhh
Confidence 44578999997 6 67777665 799999999999999999999864 23699999999999988865
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.98 E-value=5.6e-31 Score=305.25 Aligned_cols=294 Identities=29% Similarity=0.472 Sum_probs=242.2
Q ss_pred CCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCC-cEEEEECCCCcEEEecCCCCCCcccC
Q 002713 23 DEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTN-SVHLYDVLTRKWTRIRPAGEPPSPRA 101 (889)
Q Consensus 23 ~~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~n-dv~~yD~~t~~W~~l~~~g~~P~~R~ 101 (889)
....|.+|++|+++.+ ++++|||||...... .++ |+|+||..+..|.+....+..|.+|+
T Consensus 54 ~~~~p~~R~~hs~~~~------~~~~~vfGG~~~~~~-------------~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~ 114 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLI------GNKLYVFGGYGSGDR-------------LTDLDLYVLDLESQLWTKPAATGDEPSPRY 114 (482)
T ss_pred CCCCcchhhccceeEE------CCEEEEECCCCCCCc-------------cccceeEEeecCCcccccccccCCCCCccc
Confidence 3567899999999999 899999999986543 122 69999999999999999999999999
Q ss_pred ccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCc-ccCc
Q 002713 102 AHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKR-VLSD 180 (889)
Q Consensus 102 ~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~-~lnd 180 (889)
+|++++++++||+|||.......+++++.||+.+.+ |..+.+.+.+|.+|.+|+++++++ ++|||||.+... .+|+
T Consensus 115 g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~--W~~l~~~~~~P~~r~~Hs~~~~g~-~l~vfGG~~~~~~~~nd 191 (482)
T KOG0379|consen 115 GHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRT--WSLLSPTGDPPPPRAGHSATVVGT-KLVVFGGIGGTGDSLND 191 (482)
T ss_pred ceeEEEECCeEEEEccccCCCCChhheEeccCCCCc--EEEecCcCCCCCCcccceEEEECC-EEEEECCccCcccceee
Confidence 999999999999999987656678999999999955 999999999999999999999995 999999998877 8999
Q ss_pred EEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCC--CCCCCc
Q 002713 181 AWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP--GVAPSP 258 (889)
Q Consensus 181 v~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~--~~~p~~ 258 (889)
+|+||+++. +|.++...+..|.||.+|+++++.+ +++|+||.......++|+|.||+.+ |+|.... +..|.+
T Consensus 192 l~i~d~~~~--~W~~~~~~g~~P~pR~gH~~~~~~~-~~~v~gG~~~~~~~l~D~~~ldl~~---~~W~~~~~~g~~p~~ 265 (482)
T KOG0379|consen 192 LHIYDLETS--TWSELDTQGEAPSPRYGHAMVVVGN-KLLVFGGGDDGDVYLNDVHILDLST---WEWKLLPTGGDLPSP 265 (482)
T ss_pred eeeeccccc--cceecccCCCCCCCCCCceEEEECC-eEEEEeccccCCceecceEeeeccc---ceeeeccccCCCCCC
Confidence 999999999 8999999999999999999887666 5566666555566799999999986 6777554 778999
Q ss_pred cceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccCCccccCCCCCCCCCCCccCcccccceEEEEECC
Q 002713 259 RYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGV 338 (889)
Q Consensus 259 R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~h~~~~v~~ 338 (889)
|+.|+.+..+.+++++||..... ...+.++|.||+++..|..+..... ..|.+|..|+.+.+..
T Consensus 266 R~~h~~~~~~~~~~l~gG~~~~~--~~~l~~~~~l~~~~~~w~~~~~~~~--------------~~~~~~~~~~~~~~~~ 329 (482)
T KOG0379|consen 266 RSGHSLTVSGDHLLLFGGGTDPK--QEPLGDLYGLDLETLVWSKVESVGV--------------VRPSPRLGHAAELIDE 329 (482)
T ss_pred cceeeeEEECCEEEEEcCCcccc--cccccccccccccccceeeeecccc--------------ccccccccccceeecc
Confidence 99999999999999999976541 1237899999999999999988751 1144888888887755
Q ss_pred E----EEEEcCCCCCCCcccccccEEEcc
Q 002713 339 R----IYIYGGLKGAFCADILLDDFLVAE 363 (889)
Q Consensus 339 ~----lyv~GG~~~~~~~~~~~~d~~~l~ 363 (889)
. +.++||... .....+++..+.
T Consensus 330 ~~~~~~~~~~~~~~---~~~~~~~~~~~~ 355 (482)
T KOG0379|consen 330 LGKDGLGILGGNQI---LGERLADVFSLQ 355 (482)
T ss_pred CCccceeeecCccc---cccchhhccccc
Confidence 4 444444222 234444554443
No 31
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=1.9e-30 Score=293.89 Aligned_cols=287 Identities=18% Similarity=0.224 Sum_probs=214.3
Q ss_pred ceeecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECC--CCcEEEecCCCC
Q 002713 18 TYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVL--TRKWTRIRPAGE 95 (889)
Q Consensus 18 ~~w~~~~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~--t~~W~~l~~~g~ 95 (889)
-.++..+++|.||..++++++ +++|||+||.. .+.+|+||+. +++|.+++.+..
T Consensus 17 ~~~~~l~~lP~~~~~~~~~~~------~~~iyv~gG~~------------------~~~~~~~d~~~~~~~W~~l~~~p~ 72 (376)
T PRK14131 17 ANAEQLPDLPVPFKNGTGAID------NNTVYVGLGSA------------------GTSWYKLDLNAPSKGWTKIAAFPG 72 (376)
T ss_pred eecccCCCCCcCccCCeEEEE------CCEEEEEeCCC------------------CCeEEEEECCCCCCCeEECCcCCC
Confidence 346778899999998999888 89999999963 2458999987 478998874421
Q ss_pred CCcccCccEEEEECCEEEEEcCcCCC-----CCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEe
Q 002713 96 PPSPRAAHAAAAVGTMVVFQGGIGPA-----GHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVS 170 (889)
Q Consensus 96 ~P~~R~~haa~~~~~~Iyv~GG~~~~-----~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~G 170 (889)
.+|.+|++++++++||++||.... ...++++|+||+.+++ |+.+.. ..|.+|.+|+++++.+++||++|
T Consensus 73 --~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~--W~~~~~--~~p~~~~~~~~~~~~~~~IYv~G 146 (376)
T PRK14131 73 --GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS--WQKLDT--RSPVGLAGHVAVSLHNGKAYITG 146 (376)
T ss_pred --CCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE--EEeCCC--CCCCcccceEEEEeeCCEEEEEC
Confidence 479999999999999999998641 1346899999999955 999842 35777888888775556999999
Q ss_pred cCCCC----------------------------------cccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecC
Q 002713 171 GNDGK----------------------------------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSD 216 (889)
Q Consensus 171 G~~~~----------------------------------~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~ 216 (889)
|.+.. ...+++++||+.++ +|+.+.++ |.+++.+++++..+
T Consensus 147 G~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~--~W~~~~~~---p~~~~~~~a~v~~~ 221 (376)
T PRK14131 147 GVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN--QWKNAGES---PFLGTAGSAVVIKG 221 (376)
T ss_pred CCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC--eeeECCcC---CCCCCCcceEEEEC
Confidence 97632 12578999999999 99998754 54334455566678
Q ss_pred CEEEEEccCCCCCCcccceEEEec--ccCCeeEEEeCCCCCCCccc--------eeEEEEECCEEEEEcCCCCCCCC---
Q 002713 217 GMFLLCGGRDASGAPLADAYGLLM--HRNGQWEWTLAPGVAPSPRY--------QHAAVFVGARLHVTGGALRGGRA--- 283 (889)
Q Consensus 217 ~~l~v~GG~~~~~~~~~dv~~l~~--~~~~~W~w~~~~~~~p~~R~--------~hs~~~~~~~lyV~GG~~~~~~~--- 283 (889)
++|||+||....+....++|.++. .+. +|...+.+ |.+|. ++.+++++++|||+||.......
T Consensus 222 ~~iYv~GG~~~~~~~~~~~~~~~~~~~~~---~W~~~~~~-p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~ 297 (376)
T PRK14131 222 NKLWLINGEIKPGLRTDAVKQGKFTGNNL---KWQKLPDL-PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENY 297 (376)
T ss_pred CEEEEEeeeECCCcCChhheEEEecCCCc---ceeecCCC-CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhh
Confidence 899999998655544566776654 333 67777655 44442 33467789999999997642210
Q ss_pred ----------ccCCCcEEEEECCCCeEEeccCCccccCCCCCCCCCCCccCcccccceEEEEECCEEEEEcCCCCCCCcc
Q 002713 284 ----------IEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGAFCAD 353 (889)
Q Consensus 284 ----------~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~h~~~~v~~~lyv~GG~~~~~~~~ 353 (889)
......+++||+++++|+.+..++. +|..+++++++++|||+||.... .
T Consensus 298 ~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~------------------~r~~~~av~~~~~iyv~GG~~~~---~ 356 (376)
T PRK14131 298 QNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ------------------GLAYGVSVSWNNGVLLIGGETAG---G 356 (376)
T ss_pred hcCCcccccCCcceeehheEEecCCcccccCcCCC------------------CccceEEEEeCCEEEEEcCCCCC---C
Confidence 0112357899999999999887744 88899999999999999997542 3
Q ss_pred cccccEEEccC
Q 002713 354 ILLDDFLVAEN 364 (889)
Q Consensus 354 ~~~~d~~~l~~ 364 (889)
..++|++.++.
T Consensus 357 ~~~~~v~~~~~ 367 (376)
T PRK14131 357 KAVSDVTLLSW 367 (376)
T ss_pred cEeeeEEEEEE
Confidence 56778876653
No 32
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.98 E-value=2.5e-31 Score=281.20 Aligned_cols=262 Identities=27% Similarity=0.466 Sum_probs=216.4
Q ss_pred CCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccCcc
Q 002713 24 EDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAH 103 (889)
Q Consensus 24 ~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~P~~R~~h 103 (889)
-++|.||.+.++++.+. .+.|++|||...+.... .+.||+|+||..+++|+++... ..|+||++|
T Consensus 61 ~~~PspRsn~sl~~nPe----keELilfGGEf~ngqkT----------~vYndLy~Yn~k~~eWkk~~sp-n~P~pRssh 125 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPE----KEELILFGGEFYNGQKT----------HVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSH 125 (521)
T ss_pred CCCCCCCCCcceeeccC----cceeEEecceeecceeE----------EEeeeeeEEeccccceeEeccC-CCcCCCccc
Confidence 35789999999999865 66999999986543321 2689999999999999999744 578899999
Q ss_pred EEEEEC-CEEEEEcCcC--CCC---CccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCC---
Q 002713 104 AAAAVG-TMVVFQGGIG--PAG---HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDG--- 174 (889)
Q Consensus 104 aa~~~~-~~Iyv~GG~~--~~~---~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~--- 174 (889)
.++++. +.+++|||.- +.+ ....|+|+||+.+.+ |+++...| .|.+|.+|-|+++.. .|++|||...
T Consensus 126 q~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trk--weql~~~g-~PS~RSGHRMvawK~-~lilFGGFhd~nr 201 (521)
T KOG1230|consen 126 QAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRK--WEQLEFGG-GPSPRSGHRMVAWKR-QLILFGGFHDSNR 201 (521)
T ss_pred eeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccch--heeeccCC-CCCCCccceeEEeee-eEEEEcceecCCC
Confidence 999996 7999999953 222 346899999999955 99997744 899999999999997 8999999743
Q ss_pred -CcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCC--------CCcccceEEEeccc--C
Q 002713 175 -KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS--------GAPLADAYGLLMHR--N 243 (889)
Q Consensus 175 -~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~--------~~~~~dv~~l~~~~--~ 243 (889)
..++||||+||+.+- +|+++.+.+.-|.||.++.+.+...+.|||.||++.. |...+|+|.|++.. .
T Consensus 202 ~y~YyNDvy~FdLdty--kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~ 279 (521)
T KOG1230|consen 202 DYIYYNDVYAFDLDTY--KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGRE 279 (521)
T ss_pred ceEEeeeeEEEeccce--eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCC
Confidence 356999999999986 9999999888899999999999888899999998543 56789999999875 4
Q ss_pred CeeEEEeCC--CCCCCccceeEEEEE-CCEEEEEcCCCCC-----CCCccCCCcEEEEECCCCeEEeccCC
Q 002713 244 GQWEWTLAP--GVAPSPRYQHAAVFV-GARLHVTGGALRG-----GRAIEGEAAVAVLDTAAGVWLDRNGL 306 (889)
Q Consensus 244 ~~W~w~~~~--~~~p~~R~~hs~~~~-~~~lyV~GG~~~~-----~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (889)
..|.|..+. ++.|.||.++++++. +++-+.|||...- .-...+.++++.||++.++|.+....
T Consensus 280 dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 280 DKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQ 350 (521)
T ss_pred cceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhhc
Confidence 589998875 788999999999998 5699999998641 11223478999999999999876443
No 33
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.97 E-value=2.6e-31 Score=279.84 Aligned_cols=218 Identities=49% Similarity=0.779 Sum_probs=175.9
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhh
Q 002713 588 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINAL 667 (889)
Q Consensus 588 ~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ 667 (889)
+|||||||++.+|.++|+..+..+.+ .+||||||||||+++.||+.+|+.++.. |.++++||||||.+.++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d------~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~ 73 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPND------KLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFL 73 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCC------EEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhh
Confidence 58999999999999999999986655 8999999999999999999999999887 8899999999999998887
Q ss_pred cCChHHHH-----HHhCCCCchhhhhhhhhhcCCCceEEEEcC-eEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhh
Q 002713 668 FGFRLECI-----ERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILM 741 (889)
Q Consensus 668 ~gf~~e~~-----~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~-~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~ 741 (889)
+++..+.. ..........++..+.++|..||+++.++. +++|||||+.|.....+++. ..+ ..+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~------~~~-~~~~~~ 146 (225)
T cd00144 74 YGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK------EEP-EDQLPE 146 (225)
T ss_pred cCCcchhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh------cCc-ccccce
Confidence 77664421 011111234577888899999999999986 89999999999876555544 111 123678
Q ss_pred ccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCe
Q 002713 742 DLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNA 821 (889)
Q Consensus 742 dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ 821 (889)
+++|++|.... .....+.|+. |+++.+.|++.++.++|||||+++..|+.....+++|||+|++.|++..+|.
T Consensus 147 ~~lw~r~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~ 219 (225)
T cd00144 147 DLLWSDPLELP--GGFGSSRRGG-----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNK 219 (225)
T ss_pred eeeecCCCCCC--CCCcCCCCCC-----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCcc
Confidence 99999997532 2223334443 8999999999999999999999999998767789999999999999877777
Q ss_pred EEEEE
Q 002713 822 GAILV 826 (889)
Q Consensus 822 ga~l~ 826 (889)
.+++.
T Consensus 220 l~~~~ 224 (225)
T cd00144 220 LAALV 224 (225)
T ss_pred EEEEe
Confidence 77664
No 34
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=5.4e-30 Score=284.68 Aligned_cols=275 Identities=16% Similarity=0.205 Sum_probs=205.1
Q ss_pred CCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCC--CcEEEecCCCCCCcccCccEE
Q 002713 28 GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLT--RKWTRIRPAGEPPSPRAAHAA 105 (889)
Q Consensus 28 ~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t--~~W~~l~~~g~~P~~R~~haa 105 (889)
..+.||.++++ +++|||+||....... .... +.....+++|+|+... .+|..+. .+|.+|..|++
T Consensus 2 ~~~~g~~~~~~------~~~l~v~GG~~~~~~~--~~~~--g~~~~~~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~ 68 (323)
T TIGR03548 2 LGVAGCYAGII------GDYILVAGGCNFPEDP--LAEG--GKKKNYKGIYIAKDENSNLKWVKDG---QLPYEAAYGAS 68 (323)
T ss_pred CceeeEeeeEE------CCEEEEeeccCCCCCc--hhhC--CcEEeeeeeEEEecCCCceeEEEcc---cCCccccceEE
Confidence 35778999999 8999999998654210 0000 1122578999996332 3798776 55689998999
Q ss_pred EEECCEEEEEcCcCCCCCccCcEEEEEccCCce--EEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEE
Q 002713 106 AAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKF--KWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWA 183 (889)
Q Consensus 106 ~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~--~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~ 183 (889)
++++++||++||... ...++++|+||+.++++ .|..+ +++|.+|..|+++++++ +||++||......++++|+
T Consensus 69 ~~~~~~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~---~~lp~~~~~~~~~~~~~-~iYv~GG~~~~~~~~~v~~ 143 (323)
T TIGR03548 69 VSVENGIYYIGGSNS-SERFSSVYRITLDESKEELICETI---GNLPFTFENGSACYKDG-TLYVGGGNRNGKPSNKSYL 143 (323)
T ss_pred EEECCEEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEc---CCCCcCccCceEEEECC-EEEEEeCcCCCccCceEEE
Confidence 999999999999853 44678999999998663 23444 78999999999988876 8999999876667899999
Q ss_pred EecCCCCceEEEccCCCCCC-CcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCC----CCCc
Q 002713 184 LDTAQKPYVWQRLNPEGDRP-SARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGV----APSP 258 (889)
Q Consensus 184 yd~~t~~~~W~~v~~~~~~P-~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~----~p~~ 258 (889)
||+.++ +|++++++ | .+|..|++ +..+++|||+||.+.. ...|+++||+.++ +|..++.+ .|..
T Consensus 144 yd~~~~--~W~~~~~~---p~~~r~~~~~-~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~---~W~~~~~~~~~~~p~~ 212 (323)
T TIGR03548 144 FNLETQ--EWFELPDF---PGEPRVQPVC-VKLQNELYVFGGGSNI--AYTDGYKYSPKKN---QWQKVADPTTDSEPIS 212 (323)
T ss_pred EcCCCC--CeeECCCC---CCCCCCcceE-EEECCEEEEEcCCCCc--cccceEEEecCCC---eeEECCCCCCCCCcee
Confidence 999999 99999765 3 35655544 4567899999998643 3568899999877 56666543 2344
Q ss_pred cceeEEEE-ECCEEEEEcCCCCCCC----------------------------CccCCCcEEEEECCCCeEEeccCCccc
Q 002713 259 RYQHAAVF-VGARLHVTGGALRGGR----------------------------AIEGEAAVAVLDTAAGVWLDRNGLVTS 309 (889)
Q Consensus 259 R~~hs~~~-~~~~lyV~GG~~~~~~----------------------------~~~~~~~v~~yD~~t~~W~~v~~~~~~ 309 (889)
+..++++. .+++|||+||...... .....+++++||+.+++|+.+..++.
T Consensus 213 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~- 291 (323)
T TIGR03548 213 LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF- 291 (323)
T ss_pred ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc-
Confidence 44555444 4799999999863210 01123679999999999999986632
Q ss_pred cCCCCCCCCCCCccCcccccceEEEEECCEEEEEcCCCC
Q 002713 310 SRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG 348 (889)
Q Consensus 310 ~~~~~~~~~~~~~~~p~~R~~h~~~~v~~~lyv~GG~~~ 348 (889)
.+|..+++++++++||++||...
T Consensus 292 ----------------~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 292 ----------------FARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred ----------------cccCchheEEECCEEEEEecccc
Confidence 28999999999999999999644
No 35
>PLN02153 epithiospecifier protein
Probab=99.97 E-value=4.7e-29 Score=279.19 Aligned_cols=261 Identities=24% Similarity=0.378 Sum_probs=199.2
Q ss_pred CCCcEEEecCC-CCCCcccCccEEEEECCEEEEEcCcCCC-CCccCcEEEEEccCCceEEEEEeecCCCCC-CccccEEE
Q 002713 83 LTRKWTRIRPA-GEPPSPRAAHAAAAVGTMVVFQGGIGPA-GHSTDDLYVLDLTNDKFKWHRVVVQGQGPG-PRYGHVMD 159 (889)
Q Consensus 83 ~t~~W~~l~~~-g~~P~~R~~haa~~~~~~Iyv~GG~~~~-~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~-~R~~hs~~ 159 (889)
...+|.++... +..|.||.+|++++++++|||+||.... ....+++|+||+.+++ |..+.+.+..|. .+.+|+++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHT--WSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCE--EEEcCccCCCCCCccCceEEE
Confidence 45679999764 3478999999999999999999998532 3346899999999955 998865544444 34578888
Q ss_pred EECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCC--CCCCcccceEEEEecCCEEEEEccCCCCC-----Ccc
Q 002713 160 LVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEG--DRPSARMYATASARSDGMFLLCGGRDASG-----APL 232 (889)
Q Consensus 160 ~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~--~~P~~r~~~~a~~~~~~~l~v~GG~~~~~-----~~~ 232 (889)
++++ +||+|||.+....++++++||+.++ +|+.++.+. ..|.+|..|++++ .+++|||+||.+..+ ..+
T Consensus 83 ~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 83 AVGT-KLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EECC-EEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCccc
Confidence 8886 8999999988778899999999999 999987642 2377888777764 677899999986542 236
Q ss_pred cceEEEecccCCeeEEEeCCC--CCCCccceeEEEEECCEEEEEcCCCCC----CCCccCCCcEEEEECCCCeEEeccCC
Q 002713 233 ADAYGLLMHRNGQWEWTLAPG--VAPSPRYQHAAVFVGARLHVTGGALRG----GRAIEGEAAVAVLDTAAGVWLDRNGL 306 (889)
Q Consensus 233 ~dv~~l~~~~~~~W~w~~~~~--~~p~~R~~hs~~~~~~~lyV~GG~~~~----~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (889)
++++.|++.++ +|..++. ..|.+|.+|++++++++|||+||.... +......+++++||+++++|+++...
T Consensus 159 ~~v~~yd~~~~---~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 159 RTIEAYNIADG---KWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ceEEEEECCCC---eEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 78999999877 6666553 346899999999999999999997521 11112257899999999999998754
Q ss_pred ccccCCCCCCCCCCCccCcccccceEEEEECCEEEEEcCCCCCC-----CcccccccEEEccCCCC
Q 002713 307 VTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGAF-----CADILLDDFLVAENSPF 367 (889)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~p~~R~~h~~~~v~~~lyv~GG~~~~~-----~~~~~~~d~~~l~~~~~ 367 (889)
.. .|.+|..|++++++++||||||..... ......+|++.++....
T Consensus 236 g~---------------~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 236 GA---------------KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CC---------------CCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 22 145899999999999999999964211 11344567777775543
No 36
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=1.9e-28 Score=290.87 Aligned_cols=254 Identities=18% Similarity=0.203 Sum_probs=208.5
Q ss_pred CCcccccceeecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEe
Q 002713 11 PSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRI 90 (889)
Q Consensus 11 ~~yd~~~~~w~~~~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l 90 (889)
.+|++.+++|....+.|. +..|+++++ +++|||+||...... ..+++++||+.+++|..+
T Consensus 267 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~lyv~GG~~~~~~-------------~~~~v~~yd~~~~~W~~~ 326 (534)
T PHA03098 267 ITNYSPLSEINTIIDIHY-VYCFGSVVL------NNVIYFIGGMNKNNL-------------SVNSVVSYDTKTKSWNKV 326 (534)
T ss_pred eecchhhhhcccccCccc-cccceEEEE------CCEEEEECCCcCCCC-------------eeccEEEEeCCCCeeeEC
Confidence 357888889998876664 445788888 899999999864321 468999999999999987
Q ss_pred cCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEe
Q 002713 91 RPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVS 170 (889)
Q Consensus 91 ~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~G 170 (889)
+ .+|.+|.+|++++++++||++||.. .....+++++||+.+++ |+.+ .++|.+|++|+++++++ .+|++|
T Consensus 327 ~---~~~~~R~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~--W~~~---~~lp~~r~~~~~~~~~~-~iYv~G 396 (534)
T PHA03098 327 P---ELIYPRKNPGVTVFNNRIYVIGGIY-NSISLNTVESWKPGESK--WREE---PPLIFPRYNPCVVNVNN-LIYVIG 396 (534)
T ss_pred C---CCCcccccceEEEECCEEEEEeCCC-CCEecceEEEEcCCCCc--eeeC---CCcCcCCccceEEEECC-EEEEEC
Confidence 6 4558999999999999999999986 44567899999999955 9987 78899999999988876 899999
Q ss_pred cCCC-CcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCC--cccceEEEecccCCeeE
Q 002713 171 GNDG-KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGA--PLADAYGLLMHRNGQWE 247 (889)
Q Consensus 171 G~~~-~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~--~~~dv~~l~~~~~~~W~ 247 (889)
|... ...++++++||+.++ +|+.++++ |.+|.+|++++ .+++||++||.+.... .+++++.||+.++ +
T Consensus 397 G~~~~~~~~~~v~~yd~~t~--~W~~~~~~---p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~---~ 467 (534)
T PHA03098 397 GISKNDELLKTVECFSLNTN--KWSKGSPL---PISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTN---K 467 (534)
T ss_pred CcCCCCcccceEEEEeCCCC--eeeecCCC---CccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCC---c
Confidence 9643 345799999999999 99998765 77887776654 5779999999865432 3667999999987 7
Q ss_pred EEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccCCcc
Q 002713 248 WTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVT 308 (889)
Q Consensus 248 w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~ 308 (889)
|...+.. |.+|..|+++.++++|||+||...... .+++++||+++++|+.+..+|.
T Consensus 468 W~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 468 WTELSSL-NFPRINASLCIFNNKIYVVGGDKYEYY----INEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred eeeCCCC-CcccccceEEEECCEEEEEcCCcCCcc----cceeEEEeCCCCEEEecCCCcc
Confidence 7777655 688999999999999999999865432 5789999999999999887644
No 37
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.96 E-value=6.9e-29 Score=262.80 Aligned_cols=219 Identities=31% Similarity=0.541 Sum_probs=185.5
Q ss_pred CCcccccceeec--CCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEE
Q 002713 11 PSYRTLETYWDT--DEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT 88 (889)
Q Consensus 11 ~~yd~~~~~w~~--~~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~ 88 (889)
-+|++..+.|.. .++.|.||++|++++++ .+.+|||||........ ++ ....|+|.||+.+++|+
T Consensus 101 y~Yn~k~~eWkk~~spn~P~pRsshq~va~~-----s~~l~~fGGEfaSPnq~-------qF-~HYkD~W~fd~~trkwe 167 (521)
T KOG1230|consen 101 YSYNTKKNEWKKVVSPNAPPPRSSHQAVAVP-----SNILWLFGGEFASPNQE-------QF-HHYKDLWLFDLKTRKWE 167 (521)
T ss_pred eEEeccccceeEeccCCCcCCCccceeEEec-----cCeEEEeccccCCcchh-------hh-hhhhheeeeeeccchhe
Confidence 468999999984 46789999999999995 35999999987533221 11 24689999999999999
Q ss_pred EecCCCCCCcccCccEEEEECCEEEEEcCcCC---CCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcE
Q 002713 89 RIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGP---AGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRY 165 (889)
Q Consensus 89 ~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~---~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~ 165 (889)
+|...| .|+||++|-++++..+|++|||.-+ ...++||||+||+++ ++|.++.+.|..|.+|.+|.+++..++.
T Consensus 168 ql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdt--ykW~Klepsga~PtpRSGcq~~vtpqg~ 244 (521)
T KOG1230|consen 168 QLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDT--YKWSKLEPSGAGPTPRSGCQFSVTPQGG 244 (521)
T ss_pred eeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccc--eeeeeccCCCCCCCCCCcceEEecCCCc
Confidence 998776 7899999999999999999999643 235789999999999 8999999988899999999999996779
Q ss_pred EEEEecCCC---------CcccCcEEEEecCCC---CceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCC------
Q 002713 166 LVSVSGNDG---------KRVLSDAWALDTAQK---PYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA------ 227 (889)
Q Consensus 166 lyv~GG~~~---------~~~lndv~~yd~~t~---~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~------ 227 (889)
|||+||+.- ....+|+|.++++.+ .|.|.++.+.+..|.||.+.+.++..+++-++|||.-.
T Consensus 245 i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeE 324 (521)
T KOG1230|consen 245 IVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEE 324 (521)
T ss_pred EEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccch
Confidence 999999842 346899999999873 38999999999999999999999999999999999733
Q ss_pred --CCCcccceEEEecccCCee
Q 002713 228 --SGAPLADAYGLLMHRNGQW 246 (889)
Q Consensus 228 --~~~~~~dv~~l~~~~~~~W 246 (889)
.+..+||+|.|+..++ +|
T Consensus 325 sl~g~F~NDLy~fdlt~n-rW 344 (521)
T KOG1230|consen 325 SLSGEFFNDLYFFDLTRN-RW 344 (521)
T ss_pred hhhhhhhhhhhheecccc-hh
Confidence 2457899999999876 44
No 38
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=4.6e-28 Score=280.97 Aligned_cols=240 Identities=40% Similarity=0.692 Sum_probs=206.7
Q ss_pred CCcccccceee---cCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcE
Q 002713 11 PSYRTLETYWD---TDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKW 87 (889)
Q Consensus 11 ~~yd~~~~~w~---~~~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W 87 (889)
..+|..+..|. ..+..|.+|.||+++++ +++||||||...... ..++++.||+.+++|
T Consensus 91 ~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~------~~~l~lfGG~~~~~~-------------~~~~l~~~d~~t~~W 151 (482)
T KOG0379|consen 91 YVLDLESQLWTKPAATGDEPSPRYGHSLSAV------GDKLYLFGGTDKKYR-------------NLNELHSLDLSTRTW 151 (482)
T ss_pred EEeecCCcccccccccCCCCCcccceeEEEE------CCeEEEEccccCCCC-------------ChhheEeccCCCCcE
Confidence 44566667776 45678999999999999 889999999975221 489999999999999
Q ss_pred EEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEE
Q 002713 88 TRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLV 167 (889)
Q Consensus 88 ~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~ly 167 (889)
..+.+.+.+|++|++|++++++++||||||.+..+..++++|+||+.+.+ |.++.+.|..|.||++|+++++++ +++
T Consensus 152 ~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~--W~~~~~~g~~P~pR~gH~~~~~~~-~~~ 228 (482)
T KOG0379|consen 152 SLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETST--WSELDTQGEAPSPRYGHAMVVVGN-KLL 228 (482)
T ss_pred EEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecccccc--ceecccCCCCCCCCCCceEEEECC-eEE
Confidence 99999999999999999999999999999998777789999999999954 999999999999999999999998 555
Q ss_pred EEecCC-CCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCC-cccceEEEecccCCe
Q 002713 168 SVSGND-GKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGA-PLADAYGLLMHRNGQ 245 (889)
Q Consensus 168 v~GG~~-~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~-~~~dv~~l~~~~~~~ 245 (889)
++||.+ +..+++|+|.||+.+. .|.++...+..|.+|.+|+++ +.+..++++||...... .+.++|.|+.+ +..
T Consensus 229 v~gG~~~~~~~l~D~~~ldl~~~--~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~-~~~ 304 (482)
T KOG0379|consen 229 VFGGGDDGDVYLNDVHILDLSTW--EWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLE-TLV 304 (482)
T ss_pred EEeccccCCceecceEeeecccc--eeeeccccCCCCCCcceeeeE-EECCEEEEEcCCccccccccccccccccc-ccc
Confidence 555555 7888999999999995 999999999999999999999 67778889998866544 69999999999 568
Q ss_pred eEEEeCCC-CCCCccceeEEEEECCE----EEEEcC
Q 002713 246 WEWTLAPG-VAPSPRYQHAAVFVGAR----LHVTGG 276 (889)
Q Consensus 246 W~w~~~~~-~~p~~R~~hs~~~~~~~----lyV~GG 276 (889)
|.+....+ ..|.+|..|+++..... +.++||
T Consensus 305 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
T KOG0379|consen 305 WSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGG 340 (482)
T ss_pred eeeeeccccccccccccccceeeccCCccceeeecC
Confidence 98888887 77999999999887433 445555
No 39
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=3.5e-27 Score=280.03 Aligned_cols=235 Identities=15% Similarity=0.232 Sum_probs=194.4
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCcc
Q 002713 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (889)
Q Consensus 75 ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~ 154 (889)
..+..|+...++|..+.. .| .+..|+++++++.||++||........+++|+||+.+++ |..+ +++|.+|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~---~~~~~~R~ 334 (534)
T PHA03098 264 YNYITNYSPLSEINTIID---IH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKS--WNKV---PELIYPRK 334 (534)
T ss_pred ceeeecchhhhhcccccC---cc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCe--eeEC---CCCCcccc
Confidence 445678888888987652 22 356679999999999999987666677899999999954 9887 77889999
Q ss_pred ccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccc
Q 002713 155 GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLAD 234 (889)
Q Consensus 155 ~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~d 234 (889)
+|+++++++ .+|++||.++...++++++||+.++ +|+.++++ |.+|..|+++ ..+++||++||....+..+++
T Consensus 335 ~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l---p~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~ 407 (534)
T PHA03098 335 NPGVTVFNN-RIYVIGGIYNSISLNTVESWKPGES--KWREEPPL---IFPRYNPCVV-NVNNLIYVIGGISKNDELLKT 407 (534)
T ss_pred cceEEEECC-EEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCc---CcCCccceEE-EECCEEEEECCcCCCCcccce
Confidence 999988876 8999999987778999999999999 99998765 6788777765 467899999998766666889
Q ss_pred eEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccCCccccCCCC
Q 002713 235 AYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSK 314 (889)
Q Consensus 235 v~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~ 314 (889)
++.|++.++ +|...+.+ |.+|++|+++.++++|||+||...... ....+.+++||+.+++|+.+..++.
T Consensus 408 v~~yd~~t~---~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~~~~W~~~~~~~~------ 476 (534)
T PHA03098 408 VECFSLNTN---KWSKGSPL-PISHYGGCAIYHDGKIYVIGGISYIDN-IKVYNIVESYNPVTNKWTELSSLNF------ 476 (534)
T ss_pred EEEEeCCCC---eeeecCCC-CccccCceEEEECCEEEEECCccCCCC-CcccceEEEecCCCCceeeCCCCCc------
Confidence 999999877 77777655 789999999999999999999764332 1224669999999999999987633
Q ss_pred CCCCCCCccCcccccceEEEEECCEEEEEcCCCC
Q 002713 315 GHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG 348 (889)
Q Consensus 315 ~~~~~~~~~~p~~R~~h~~~~v~~~lyv~GG~~~ 348 (889)
+|..+++++++++|||+||.++
T Consensus 477 ------------~r~~~~~~~~~~~iyv~GG~~~ 498 (534)
T PHA03098 477 ------------PRINASLCIFNNKIYVVGGDKY 498 (534)
T ss_pred ------------ccccceEEEECCEEEEEcCCcC
Confidence 8899999999999999999764
No 40
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=7.6e-27 Score=259.46 Aligned_cols=230 Identities=17% Similarity=0.251 Sum_probs=185.0
Q ss_pred eeecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEE-EecCCCCCC
Q 002713 19 YWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT-RIRPAGEPP 97 (889)
Q Consensus 19 ~w~~~~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~-~l~~~g~~P 97 (889)
+|...+++|.||..|+++++ +++||++||..... .++++++||+.+++|+ ++....++|
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~------~~~lyviGG~~~~~--------------~~~~v~~~d~~~~~w~~~~~~~~~lp 111 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSV------ENGIYYIGGSNSSE--------------RFSSVYRITLDESKEELICETIGNLP 111 (323)
T ss_pred eEEEcccCCccccceEEEEE------CCEEEEEcCCCCCC--------------CceeEEEEEEcCCceeeeeeEcCCCC
Confidence 79999999999998989998 88999999976322 3789999999999983 333445678
Q ss_pred cccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCC-CCccccEEEEECCcEEEEEecCCCCc
Q 002713 98 SPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP-GPRYGHVMDLVSQRYLVSVSGNDGKR 176 (889)
Q Consensus 98 ~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p-~~R~~hs~~~~~~~~lyv~GG~~~~~ 176 (889)
.+|..|++++++++||++||.. .+..++++|+||+.+++ |+.+ .++| .+|..|+++++++ +|||+||.++..
T Consensus 112 ~~~~~~~~~~~~~~iYv~GG~~-~~~~~~~v~~yd~~~~~--W~~~---~~~p~~~r~~~~~~~~~~-~iYv~GG~~~~~ 184 (323)
T TIGR03548 112 FTFENGSACYKDGTLYVGGGNR-NGKPSNKSYLFNLETQE--WFEL---PDFPGEPRVQPVCVKLQN-ELYVFGGGSNIA 184 (323)
T ss_pred cCccCceEEEECCEEEEEeCcC-CCccCceEEEEcCCCCC--eeEC---CCCCCCCCCcceEEEECC-EEEEEcCCCCcc
Confidence 8999999999999999999974 33457899999999955 9988 4555 4788888877776 899999987543
Q ss_pred ccCcEEEEecCCCCceEEEccCCCC--CCCcccceEEEEecCCEEEEEccCCCCC-------------------------
Q 002713 177 VLSDAWALDTAQKPYVWQRLNPEGD--RPSARMYATASARSDGMFLLCGGRDASG------------------------- 229 (889)
Q Consensus 177 ~lndv~~yd~~t~~~~W~~v~~~~~--~P~~r~~~~a~~~~~~~l~v~GG~~~~~------------------------- 229 (889)
..++++||+.++ +|+.++++.. .|..+..++++++.+++|||+||.+...
T Consensus 185 -~~~~~~yd~~~~--~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (323)
T TIGR03548 185 -YTDGYKYSPKKN--QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFL 261 (323)
T ss_pred -ccceEEEecCCC--eeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhC
Confidence 467899999999 9999987632 3455556666777889999999986431
Q ss_pred ------CcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCC
Q 002713 230 ------APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGG 281 (889)
Q Consensus 230 ------~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~ 281 (889)
...++++.||+.++ +|..++..+..+|..++++.++++||++||....+
T Consensus 262 ~~~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 262 KPPEWYNWNRKILIYNVRTG---KWKSIGNSPFFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred CCccccCcCceEEEEECCCC---eeeEcccccccccCchheEEECCEEEEEeccccCC
Confidence 11367999999988 78777755446899999999999999999976544
No 41
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.1e-26 Score=250.49 Aligned_cols=259 Identities=25% Similarity=0.414 Sum_probs=211.3
Q ss_pred Ccccccceee---cCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEE
Q 002713 12 SYRTLETYWD---TDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT 88 (889)
Q Consensus 12 ~yd~~~~~w~---~~~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~ 88 (889)
-|+..+|.|. ..++.|.+-..|..++. |.+||+|||...... ++||+|.+.-..-.|+
T Consensus 61 vYNTatnqWf~PavrGDiPpgcAA~Gfvcd------GtrilvFGGMvEYGk-------------YsNdLYELQasRWeWk 121 (830)
T KOG4152|consen 61 VYNTATNQWFAPAVRGDIPPGCAAFGFVCD------GTRILVFGGMVEYGK-------------YSNDLYELQASRWEWK 121 (830)
T ss_pred hhccccceeecchhcCCCCCchhhcceEec------CceEEEEccEeeecc-------------ccchHHHhhhhhhhHh
Confidence 4888999997 56889999999999999 889999999986543 6999999988888999
Q ss_pred EecCC----CCCCcccCccEEEEECCEEEEEcCcCCC--------CCccCcEEEEEccC--CceEEEEEeecCCCCCCcc
Q 002713 89 RIRPA----GEPPSPRAAHAAAAVGTMVVFQGGIGPA--------GHSTDDLYVLDLTN--DKFKWHRVVVQGQGPGPRY 154 (889)
Q Consensus 89 ~l~~~----g~~P~~R~~haa~~~~~~Iyv~GG~~~~--------~~~~~dv~~yD~~t--~~~~W~~v~~~g~~p~~R~ 154 (889)
++.+. |.+|-||.+|+..+++++.|+|||...+ -.+++|+|+++++- .-.-|....+.|..|.+|-
T Consensus 122 rlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRE 201 (830)
T KOG4152|consen 122 RLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRE 201 (830)
T ss_pred hcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcc
Confidence 98754 5678899999999999999999996421 25789999999983 3466999999999999999
Q ss_pred ccEEEEE-----CCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCC-
Q 002713 155 GHVMDLV-----SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS- 228 (889)
Q Consensus 155 ~hs~~~~-----~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~- 228 (889)
.|+++++ +..++|||||..+ ..+.|+|.+|+++. .|.+....|..|.||.-|++..+. +++|||||+-..
T Consensus 202 SHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl--~W~kp~~~G~~PlPRSLHsa~~IG-nKMyvfGGWVPl~ 277 (830)
T KOG4152|consen 202 SHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTL--TWNKPSLSGVAPLPRSLHSATTIG-NKMYVFGGWVPLV 277 (830)
T ss_pred cceeEEEEeccCCcceEEEEccccc-ccccceeEEeccee--ecccccccCCCCCCcccccceeec-ceeEEecceeeee
Confidence 9999988 1238999999985 56999999999998 999999999999999999998754 589999998321
Q ss_pred ------------CCcccceEEEecccCCeeEEEeCC------CCCCCccceeEEEEECCEEEEEcCCCCCCCCcc---CC
Q 002713 229 ------------GAPLADAYGLLMHRNGQWEWTLAP------GVAPSPRYQHAAVFVGARLHVTGGALRGGRAIE---GE 287 (889)
Q Consensus 229 ------------~~~~~dv~~l~~~~~~~W~w~~~~------~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~---~~ 287 (889)
-.+.+.+-+++..++ .|..+. ...|.+|++|+++.+|.+|||.-|+++.....+ .+
T Consensus 278 ~~~~~~~~hekEWkCTssl~clNldt~---~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCC 354 (830)
T KOG4152|consen 278 MDDVKVATHEKEWKCTSSLACLNLDTM---AWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCC 354 (830)
T ss_pred ccccccccccceeeeccceeeeeecch---heeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccch
Confidence 134566677777766 554432 235899999999999999999999875332211 26
Q ss_pred CcEEEEECC
Q 002713 288 AAVAVLDTA 296 (889)
Q Consensus 288 ~~v~~yD~~ 296 (889)
.++|.+|++
T Consensus 355 kDlWyLdTe 363 (830)
T KOG4152|consen 355 KDLWYLDTE 363 (830)
T ss_pred hhhhhhccc
Confidence 788888875
No 42
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.94 E-value=2.7e-25 Score=251.93 Aligned_cols=257 Identities=19% Similarity=0.284 Sum_probs=187.9
Q ss_pred Ccccc--cceeecCCCCC-CCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEE
Q 002713 12 SYRTL--ETYWDTDEDAP-GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT 88 (889)
Q Consensus 12 ~yd~~--~~~w~~~~~~P-~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~ 88 (889)
.||.. ++.|...+++| .+|.+|+++++ +++||||||....... .....++++|+||+.+++|+
T Consensus 54 ~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~------~~~IYV~GG~~~~~~~--------~~~~~~~~v~~YD~~~n~W~ 119 (376)
T PRK14131 54 KLDLNAPSKGWTKIAAFPGGPREQAVAAFI------DGKLYVFGGIGKTNSE--------GSPQVFDDVYKYDPKTNSWQ 119 (376)
T ss_pred EEECCCCCCCeEECCcCCCCCcccceEEEE------CCEEEEEcCCCCCCCC--------CceeEcccEEEEeCCCCEEE
Confidence 35543 57899999888 58999999999 8999999998641110 00124789999999999999
Q ss_pred EecCCCCCCcccCccEEEE-ECCEEEEEcCcCCCC---------------------------------CccCcEEEEEcc
Q 002713 89 RIRPAGEPPSPRAAHAAAA-VGTMVVFQGGIGPAG---------------------------------HSTDDLYVLDLT 134 (889)
Q Consensus 89 ~l~~~g~~P~~R~~haa~~-~~~~Iyv~GG~~~~~---------------------------------~~~~dv~~yD~~ 134 (889)
+++.. .|.+|.+|++++ .+++||++||..... ..++++++||+.
T Consensus 120 ~~~~~--~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~ 197 (376)
T PRK14131 120 KLDTR--SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPS 197 (376)
T ss_pred eCCCC--CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECC
Confidence 98742 366788888887 799999999975210 124789999999
Q ss_pred CCceEEEEEeecCCCCC-CccccEEEEECCcEEEEEecCCCCc-ccCcEEE--EecCCCCceEEEccCCCCCCCccc---
Q 002713 135 NDKFKWHRVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWA--LDTAQKPYVWQRLNPEGDRPSARM--- 207 (889)
Q Consensus 135 t~~~~W~~v~~~g~~p~-~R~~hs~~~~~~~~lyv~GG~~~~~-~lndv~~--yd~~t~~~~W~~v~~~~~~P~~r~--- 207 (889)
+++ |..+ +++|. +|.+|+++.+++ +|||+||..... ...++|. ||++++ +|..++.+ |.+|.
T Consensus 198 t~~--W~~~---~~~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~--~W~~~~~~---p~~~~~~~ 266 (376)
T PRK14131 198 TNQ--WKNA---GESPFLGTAGSAVVIKGN-KLWLINGEIKPGLRTDAVKQGKFTGNNL--KWQKLPDL---PPAPGGSS 266 (376)
T ss_pred CCe--eeEC---CcCCCCCCCcceEEEECC-EEEEEeeeECCCcCChhheEEEecCCCc--ceeecCCC---CCCCcCCc
Confidence 955 9987 67775 788888877775 899999975432 3455665 456777 99999876 33332
Q ss_pred ----ceEEEEecCCEEEEEccCCCCCC----------------cccceEEEecccCCeeEEEeCCCCCCCccceeEEEEE
Q 002713 208 ----YATASARSDGMFLLCGGRDASGA----------------PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV 267 (889)
Q Consensus 208 ----~~~a~~~~~~~l~v~GG~~~~~~----------------~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~ 267 (889)
.++++++.+++|||+||.+.... ....+..|++.++ +|.....+ |.+|..|+++.+
T Consensus 267 ~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~l-p~~r~~~~av~~ 342 (376)
T PRK14131 267 QEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG---KWQKVGEL-PQGLAYGVSVSW 342 (376)
T ss_pred CCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC---cccccCcC-CCCccceEEEEe
Confidence 22334567889999999853210 0123557787766 66666554 889999999999
Q ss_pred CCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEe
Q 002713 268 GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLD 302 (889)
Q Consensus 268 ~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~ 302 (889)
+++|||+||....+ ...++|+.|+++.+.|+.
T Consensus 343 ~~~iyv~GG~~~~~---~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 343 NNGVLLIGGETAGG---KAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CCEEEEEcCCCCCC---cEeeeEEEEEEcCCEEEE
Confidence 99999999975433 236899999998888764
No 43
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.94 E-value=3.3e-25 Score=248.77 Aligned_cols=251 Identities=19% Similarity=0.304 Sum_probs=181.7
Q ss_pred Cccc--ccceeecCCCCC-CCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEE
Q 002713 12 SYRT--LETYWDTDEDAP-GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT 88 (889)
Q Consensus 12 ~yd~--~~~~w~~~~~~P-~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~ 88 (889)
.||+ .+++|...+++| .+|.+|+++++ +++|||+||........ ....++++|+||+.+++|+
T Consensus 33 ~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~------~~~iYv~GG~~~~~~~~--------~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 33 KLDLKKPSKGWQKIADFPGGPRNQAVAAAI------DGKLYVFGGIGKANSEG--------SPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred EEECCCCCCCceECCCCCCCCcccceEEEE------CCEEEEEeCCCCCCCCC--------cceecccEEEEECCCCEEe
Confidence 4553 678999999999 59999999999 89999999985322100 0114789999999999999
Q ss_pred EecCCCCCCcccCccEEE-EECCEEEEEcCcCCCC---------------------------------CccCcEEEEEcc
Q 002713 89 RIRPAGEPPSPRAAHAAA-AVGTMVVFQGGIGPAG---------------------------------HSTDDLYVLDLT 134 (889)
Q Consensus 89 ~l~~~g~~P~~R~~haa~-~~~~~Iyv~GG~~~~~---------------------------------~~~~dv~~yD~~ 134 (889)
+++. .+|.+|.+|+++ +++++||++||..... ..++++++||+.
T Consensus 99 ~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~ 176 (346)
T TIGR03547 99 KLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPS 176 (346)
T ss_pred cCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECC
Confidence 9873 346678888877 6899999999975210 124789999999
Q ss_pred CCceEEEEEeecCCCCC-CccccEEEEECCcEEEEEecCCCCc-ccCcEEEEec--CCCCceEEEccCCCCCC----Ccc
Q 002713 135 NDKFKWHRVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWALDT--AQKPYVWQRLNPEGDRP----SAR 206 (889)
Q Consensus 135 t~~~~W~~v~~~g~~p~-~R~~hs~~~~~~~~lyv~GG~~~~~-~lndv~~yd~--~t~~~~W~~v~~~~~~P----~~r 206 (889)
+++ |+.+ +++|. +|.+|+++++++ +|||+||..... ...+++.|++ .++ +|+.++.+.... ..+
T Consensus 177 t~~--W~~~---~~~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~y~~~~~~~--~W~~~~~m~~~r~~~~~~~ 248 (346)
T TIGR03547 177 TNQ--WRNL---GENPFLGTAGSAIVHKGN-KLLLINGEIKPGLRTAEVKQYLFTGGKL--EWNKLPPLPPPKSSSQEGL 248 (346)
T ss_pred CCc--eeEC---ccCCCCcCCCceEEEECC-EEEEEeeeeCCCccchheEEEEecCCCc--eeeecCCCCCCCCCccccc
Confidence 955 9998 67775 688888877776 899999986433 2356777765 556 999998773211 112
Q ss_pred cceEEEEecCCEEEEEccCCCCCC----------------cccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCE
Q 002713 207 MYATASARSDGMFLLCGGRDASGA----------------PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGAR 270 (889)
Q Consensus 207 ~~~~a~~~~~~~l~v~GG~~~~~~----------------~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~ 270 (889)
..|+ ++..+++|||+||.+..+. .+..+.+|+...+ +|.....+ |.+|..++++.++++
T Consensus 249 ~~~~-a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~l-p~~~~~~~~~~~~~~ 323 (346)
T TIGR03547 249 AGAF-AGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG---KWSKVGKL-PQGLAYGVSVSWNNG 323 (346)
T ss_pred cEEe-eeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC---cccccCCC-CCCceeeEEEEcCCE
Confidence 2333 3456889999999853210 1234667777766 67777655 788999998899999
Q ss_pred EEEEcCCCCCCCCccCCCcEEEEE
Q 002713 271 LHVTGGALRGGRAIEGEAAVAVLD 294 (889)
Q Consensus 271 lyV~GG~~~~~~~~~~~~~v~~yD 294 (889)
|||+||....+. ..++|+.|-
T Consensus 324 iyv~GG~~~~~~---~~~~v~~~~ 344 (346)
T TIGR03547 324 VLLIGGENSGGK---AVTDVYLLS 344 (346)
T ss_pred EEEEeccCCCCC---EeeeEEEEE
Confidence 999999865432 256676653
No 44
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=4.9e-25 Score=256.94 Aligned_cols=208 Identities=19% Similarity=0.255 Sum_probs=172.9
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCc
Q 002713 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (889)
Q Consensus 45 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~ 124 (889)
++.||++||..... ..+++++||+.+++|..++++ |.+|..|++++++++||++||...
T Consensus 271 ~~~lyviGG~~~~~--------------~~~~v~~Ydp~~~~W~~~~~m---~~~r~~~~~v~~~~~iYviGG~~~---- 329 (480)
T PHA02790 271 GEVVYLIGGWMNNE--------------IHNNAIAVNYISNNWIPIPPM---NSPRLYASGVPANNKLYVVGGLPN---- 329 (480)
T ss_pred CCEEEEEcCCCCCC--------------cCCeEEEEECCCCEEEECCCC---CchhhcceEEEECCEEEEECCcCC----
Confidence 88999999975321 378899999999999988854 589999999999999999999742
Q ss_pred cCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCC
Q 002713 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (889)
Q Consensus 125 ~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~ 204 (889)
.+.+++||+.+++ |..+ .++|.+|.+|+++++++ +||++||.++. .+.+.+||+.++ +|+.++++ |.
T Consensus 330 ~~sve~ydp~~n~--W~~~---~~l~~~r~~~~~~~~~g-~IYviGG~~~~--~~~ve~ydp~~~--~W~~~~~m---~~ 396 (480)
T PHA02790 330 PTSVERWFHGDAA--WVNM---PSLLKPRCNPAVASINN-VIYVIGGHSET--DTTTEYLLPNHD--QWQFGPST---YY 396 (480)
T ss_pred CCceEEEECCCCe--EEEC---CCCCCCCcccEEEEECC-EEEEecCcCCC--CccEEEEeCCCC--EEEeCCCC---CC
Confidence 2568999998855 9988 78999999999988876 99999998653 477999999999 99999876 67
Q ss_pred cccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCc
Q 002713 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (889)
Q Consensus 205 ~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~ 284 (889)
+|.+|+++ ..+++||++||. +..|++.++ +|...+.+ |.+|..+++++++++|||+||+.+...
T Consensus 397 ~r~~~~~~-~~~~~IYv~GG~---------~e~ydp~~~---~W~~~~~m-~~~r~~~~~~v~~~~IYviGG~~~~~~-- 460 (480)
T PHA02790 397 PHYKSCAL-VFGRRLFLVGRN---------AEFYCESSN---TWTLIDDP-IYPRDNPELIIVDNKLLLIGGFYRGSY-- 460 (480)
T ss_pred ccccceEE-EECCEEEEECCc---------eEEecCCCC---cEeEcCCC-CCCccccEEEEECCEEEEECCcCCCcc--
Confidence 88777665 467899999984 456777766 77777665 789999999999999999999864321
Q ss_pred cCCCcEEEEECCCCeEEecc
Q 002713 285 EGEAAVAVLDTAAGVWLDRN 304 (889)
Q Consensus 285 ~~~~~v~~yD~~t~~W~~v~ 304 (889)
.+++++||+++++|+...
T Consensus 461 --~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 461 --IDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred --cceEEEEECCCCeEEecC
Confidence 478999999999998654
No 45
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=3e-23 Score=242.00 Aligned_cols=206 Identities=15% Similarity=0.245 Sum_probs=169.2
Q ss_pred EEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEE
Q 002713 105 AAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWAL 184 (889)
Q Consensus 105 a~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~y 184 (889)
++..++.||++||... ....+.+++||+.+++ |..+ .+++.+|..++++++++ .+|++||.++. +.+++|
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~~--W~~~---~~m~~~r~~~~~v~~~~-~iYviGG~~~~---~sve~y 336 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISNN--WIPI---PPMNSPRLYASGVPANN-KLYVVGGLPNP---TSVERW 336 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCCE--EEEC---CCCCchhhcceEEEECC-EEEEECCcCCC---CceEEE
Confidence 3458999999999753 3467889999999955 9998 78899999999988875 99999998642 679999
Q ss_pred ecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeEE
Q 002713 185 DTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAA 264 (889)
Q Consensus 185 d~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~ 264 (889)
|+.++ +|..++++ |.+|..++++ ..+++||++||.+.. .+.+.+|++.++ +|...+.+ +.+|++|++
T Consensus 337 dp~~n--~W~~~~~l---~~~r~~~~~~-~~~g~IYviGG~~~~---~~~ve~ydp~~~---~W~~~~~m-~~~r~~~~~ 403 (480)
T PHA02790 337 FHGDA--AWVNMPSL---LKPRCNPAVA-SINNVIYVIGGHSET---DTTTEYLLPNHD---QWQFGPST-YYPHYKSCA 403 (480)
T ss_pred ECCCC--eEEECCCC---CCCCcccEEE-EECCEEEEecCcCCC---CccEEEEeCCCC---EEEeCCCC-CCccccceE
Confidence 99999 99999876 6788766555 568899999997543 356888998877 77777665 789999999
Q ss_pred EEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccCCccccCCCCCCCCCCCccCcccccceEEEEECCEEEEEc
Q 002713 265 VFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYG 344 (889)
Q Consensus 265 ~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~h~~~~v~~~lyv~G 344 (889)
++++++|||+||. +++||+++++|+.++.++. +|..+++++++++||++|
T Consensus 404 ~~~~~~IYv~GG~------------~e~ydp~~~~W~~~~~m~~------------------~r~~~~~~v~~~~IYviG 453 (480)
T PHA02790 404 LVFGRRLFLVGRN------------AEFYCESSNTWTLIDDPIY------------------PRDNPELIIVDNKLLLIG 453 (480)
T ss_pred EEECCEEEEECCc------------eEEecCCCCcEeEcCCCCC------------------CccccEEEEECCEEEEEC
Confidence 9999999999982 6789999999999998844 899999999999999999
Q ss_pred CCCC------CCCcccccccEEEcc
Q 002713 345 GLKG------AFCADILLDDFLVAE 363 (889)
Q Consensus 345 G~~~------~~~~~~~~~d~~~l~ 363 (889)
|.++ .+.||+..+.|...|
T Consensus 454 G~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 454 GFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred CcCCCcccceEEEEECCCCeEEecC
Confidence 9753 346666666665543
No 46
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.89 E-value=9.9e-23 Score=210.89 Aligned_cols=185 Identities=21% Similarity=0.366 Sum_probs=131.5
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcc--eeeEEEeccccCCCCChHHHHHHHHHHhhc---CCCcEEEecCCCccc
Q 002713 588 KVFGDLHGQFGDLMRLFDEYGFPSTAGDIT--YIDYLFLGDYVDRGQHSLETITLLLALKIE---YPENVHLIRGNHEAA 662 (889)
Q Consensus 588 ~vvGDiHG~~~~l~~il~~~g~~~~~~~~~--~~~~vfLGD~vDRG~~s~evl~ll~~lk~~---~p~~v~llrGNHE~~ 662 (889)
+||||||||++.|.++|+..++.+....|. ...+||||||||||+++.||+.+|++|+.+ .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 589999999999999999988643221111 128999999999999999999999999754 457899999999999
Q ss_pred hhhhhcCChHH-HHHHhCCC--Cchhhh---hhhhhhcCCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCC
Q 002713 663 DINALFGFRLE-CIERMGEN--DGIWAW---TRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAG 736 (889)
Q Consensus 663 ~~~~~~gf~~e-~~~~~~~~--~~~~~~---~~~~~~f~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~ 736 (889)
.++..+.+... ....+... .....+ ..+.++++.||+...+++ ++|||||++|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~~-~~fvHag~~~-------------------- 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVND-TLFVHGGLGP-------------------- 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEECC-EEEEeCCcHH--------------------
Confidence 98755433211 11111100 001122 244788999999998874 8889999922
Q ss_pred CchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcCCeEEEEeccccccceEEecCCeEEEEecc
Q 002713 737 SIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSA 811 (889)
Q Consensus 737 ~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa 811 (889)
+|+..-.. +... ..-+...+.++|+.++.++||+||+.++.|....++|++|+|.+.
T Consensus 140 -------~w~r~y~~-------~~~~----~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 140 -------LWYRGYSK-------ETSD----KECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred -------HHhhHhhh-------hhhh----ccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 33321100 0000 001236788999999999999999999888766899999999874
No 47
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.88 E-value=4.2e-22 Score=211.77 Aligned_cols=131 Identities=22% Similarity=0.393 Sum_probs=99.6
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCC---cceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccc
Q 002713 586 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGD---ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 662 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l~~il~~~g~~~~~~~---~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 662 (889)
+++||||||||++.|.++|+++++....+. ....++||||||||||++|+|||.+|++|. .+.++++||||||.+
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence 589999999999999999999987411100 001279999999999999999999999885 446899999999999
Q ss_pred hhhhhcCC-------hHHHHHHhCCC---CchhhhhhhhhhcCCCceEEEEc-CeEEEecCCCCCCC
Q 002713 663 DINALFGF-------RLECIERMGEN---DGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSI 718 (889)
Q Consensus 663 ~~~~~~gf-------~~e~~~~~~~~---~~~~~~~~~~~~f~~LPlaa~i~-~~i~~vHgGi~~~~ 718 (889)
.++...+- ..+.+..|... ....+++.+.++|+.||++..++ ++++|||||+.|..
T Consensus 80 ~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~ 146 (245)
T PRK13625 80 LYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDY 146 (245)
T ss_pred HHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHh
Confidence 88765431 12334444321 11236678899999999998874 67999999998763
No 48
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.85 E-value=2.8e-21 Score=204.41 Aligned_cols=130 Identities=23% Similarity=0.427 Sum_probs=99.6
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCC----CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCc
Q 002713 585 APVKVFGDLHGQFGDLMRLFDEYGFPSTAG----DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 660 (889)
Q Consensus 585 ~~i~vvGDiHG~~~~l~~il~~~g~~~~~~----~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 660 (889)
.||.||||||||+.+|+++|+.+++.+.+. .....++||||||||||++|.|||.+|++|+.. .++++||||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcH
Confidence 379999999999999999999998864320 000127999999999999999999999998754 57999999999
Q ss_pred cchhhhhcCCh-------HHHHHHhCCCCchhhhhhhhhhcCCCceEEEEc-CeEEEecCCCCCC
Q 002713 661 AADINALFGFR-------LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRS 717 (889)
Q Consensus 661 ~~~~~~~~gf~-------~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~-~~i~~vHgGi~~~ 717 (889)
.+.++...+.. .+....+... ...+.+.+.++|+.||+...++ ++++|||||+++.
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~ 142 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLEETVAQLEAE-SEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEE 142 (234)
T ss_pred HHHHHHhcCCCccccCcccchHHHHhhc-cHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChH
Confidence 99887543311 2223333221 2345677889999999998876 4799999998875
No 49
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.84 E-value=3.1e-21 Score=204.38 Aligned_cols=160 Identities=23% Similarity=0.374 Sum_probs=114.4
Q ss_pred eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhh
Q 002713 587 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINA 666 (889)
Q Consensus 587 i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~ 666 (889)
++||||||||++.|.++|+.+++.+..+ .++|||||||||++|+|||.+|++|+ .++++|+||||.+.++.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D-----~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~ 71 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKD-----RLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAV 71 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCC-----EEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHH
Confidence 5899999999999999999999864332 89999999999999999999999986 58999999999999887
Q ss_pred hcCChH----HHHHHhCCCCchhhhhhhhhhcCCCceEEEEcC-eEEEecCCCCCCCcCHHHhhcccCCcc----cCCCC
Q 002713 667 LFGFRL----ECIERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLERPIT----MDAGS 737 (889)
Q Consensus 667 ~~gf~~----e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~-~i~~vHgGi~~~~~~~~~i~~~~rp~~----~~~~~ 737 (889)
.+|+.. +....+-. ....+.+.++++.+|+...+++ ++++|||||+|.. ++++...+.+.++ -+...
T Consensus 72 ~~g~~~~~~~~t~~~~l~---~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w-~~~~~~~~a~eve~~l~~~~~~ 147 (257)
T cd07422 72 AAGIKKPKKKDTLDDILN---APDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQW-SIEQALKLAREVEAALRGPNYR 147 (257)
T ss_pred hcCccccccHhHHHHHHh---ccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCC-CHHHHHHHHHHHHHHhcCCcHH
Confidence 666431 11111111 1123567899999999998875 8999999999985 4444433333221 11222
Q ss_pred chhhccccCCCCCCCCCCCcccCCCCCc
Q 002713 738 IILMDLLWSDPTENDSIEGLRPNARGPG 765 (889)
Q Consensus 738 ~~~~dllWsdP~~~~~~~~~~~n~rg~~ 765 (889)
.++..+.|+.|.. |.++..|..
T Consensus 148 ~~~~~my~~~p~~------W~~~l~g~~ 169 (257)
T cd07422 148 EFLKNMYGNEPDR------WSDDLTGID 169 (257)
T ss_pred HHHHHhhCCCCcc------cCcccCccH
Confidence 2455556666642 555555543
No 50
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.84 E-value=1.9e-20 Score=195.95 Aligned_cols=123 Identities=23% Similarity=0.329 Sum_probs=92.9
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCC--cceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhh
Q 002713 588 KVFGDLHGQFGDLMRLFDEYGFPSTAGD--ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 665 (889)
Q Consensus 588 ~vvGDiHG~~~~l~~il~~~g~~~~~~~--~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 665 (889)
+||||||||++.|.++|+.+++....+. ....++|||||||||||+|.|||.+|++++.. .++++|+||||.+.+.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~--~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDA--GHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcC--CCEEEEEccCcHHHHH
Confidence 6999999999999999999987532100 00118999999999999999999999998643 5899999999999876
Q ss_pred hhcCCh-----------------HHHHHHhCCCCchhhhhhhhhhcCCCceEEEEcCeEEEecCCCC
Q 002713 666 ALFGFR-----------------LECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIG 715 (889)
Q Consensus 666 ~~~gf~-----------------~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~i~~vHgGi~ 715 (889)
...+.. .+..+.++. ....++.+.++|+.||+...++ +++|||||+.
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~lP~~~~~~-~~~~VHAg~~ 143 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFRE--HSEEHKDWLEWFKTLPLFLDLG-GVRVVHACWD 143 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhc--cchhHHHHHHHHhcCCcEEEEC-CEEEEECCcC
Confidence 443210 122233321 1235677889999999998775 5999999986
No 51
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.84 E-value=3.1e-20 Score=199.00 Aligned_cols=219 Identities=19% Similarity=0.329 Sum_probs=141.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhh
Q 002713 586 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 665 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 665 (889)
.++||||||||++.|.++|+.+++.+..+ .++|||||||||++|+||+.+|+++ +.++++|+||||.+.+.
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D-----~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~ 72 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKD-----TLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLA 72 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCC-----EEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHH
Confidence 58999999999999999999998754332 7999999999999999999999987 35799999999999888
Q ss_pred hhcCChH----HHHHHhCCCCchhhhhhhhhhcCCCceEEEE-cCeEEEecCCCCCCCcCHHHhhcc----cCCcccCCC
Q 002713 666 ALFGFRL----ECIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRSIHSVEQIEKL----ERPITMDAG 736 (889)
Q Consensus 666 ~~~gf~~----e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i-~~~i~~vHgGi~~~~~~~~~i~~~----~rp~~~~~~ 736 (889)
..+|+.. +....+-. ....+.+.++++.||+...+ ++++++||||++|.. ++++...+ +..+.-+..
T Consensus 73 ~~~g~~~~~~~~~l~~~l~---~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~-~~~~~~~~a~eve~~l~~~~~ 148 (275)
T PRK00166 73 VAAGIKRNKKKDTLDPILE---APDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQW-DLATALALAREVEAVLRSDDY 148 (275)
T ss_pred hhcCCccccchhHHHHHHc---cccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCC-CHHHHHHHHHHHHHHhcCCcH
Confidence 7776531 11112111 12345678899999999887 568999999999975 33332222 112221222
Q ss_pred CchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH--HHHHHhcC-----------------------------CeE
Q 002713 737 SIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV--SDFCKRNK-----------------------------LQL 785 (889)
Q Consensus 737 ~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~--~~fl~~~~-----------------------------l~~ 785 (889)
..++..+.|+.|.. |.++..|.....|--.++ -+||...| -..
T Consensus 149 ~~~~~~my~~~p~~------W~~~l~~~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~~~~~~~~~pWf~~~~~~~~~~~ 222 (275)
T PRK00166 149 RDFLANMYGNEPDR------WSPDLTGLERLRYIINAFTRMRFCTPDGRLDFKCKGPPDEAPAGLKPWFEVPGRKTRDYT 222 (275)
T ss_pred HHHHHHhcCCCcCc------cCcccCchHHHHHHHHHHhhhhcccCCCceeecccCCcccCCcCCCCCccCcCccCCCCe
Confidence 22555666666642 443333322111211111 11222222 336
Q ss_pred EEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcC
Q 002713 786 IIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGR 829 (889)
Q Consensus 786 iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~ 829 (889)
||-||-....|... ...++.|=+..-+ ++.=..|.++.
T Consensus 223 i~fGHwa~l~G~~~--~~~~~~LDtGcvw----gg~Lta~~l~~ 260 (275)
T PRK00166 223 IVFGHWAALEGLTT--PPNIIALDTGCVW----GGKLTALRLED 260 (275)
T ss_pred EEEecCcccCCccC--CCCeEEeeccccc----CCeEEEEEeCC
Confidence 89999998778765 5668888776433 23334455543
No 52
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.83 E-value=2.2e-20 Score=197.59 Aligned_cols=126 Identities=25% Similarity=0.369 Sum_probs=101.2
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhh
Q 002713 586 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 665 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 665 (889)
.++||||||||+++|.++|+++++.+..+ .++||||||||||+|+|||.+|.+++ .++++|+||||.+.++
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D-----~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~ 72 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQD-----TLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLA 72 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCC-----EEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHH
Confidence 48999999999999999999999865432 79999999999999999999999874 5688999999999998
Q ss_pred hhcCCh-----HHHHHHhCCCCchhhhhhhhhhcCCCceEEEEc-CeEEEecCCCCCCCcCHHHhh
Q 002713 666 ALFGFR-----LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSIHSVEQIE 725 (889)
Q Consensus 666 ~~~gf~-----~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~-~~i~~vHgGi~~~~~~~~~i~ 725 (889)
..+|+. +.....+. ....+.+.++++.+|+....+ .++++|||||+|.. ++++..
T Consensus 73 ~~~g~~~~~~~d~l~~~l~----a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w-~l~~a~ 133 (279)
T TIGR00668 73 VFAGISRNKPKDRLDPLLE----APDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQW-DLQTAK 133 (279)
T ss_pred HhcCCCccCchHHHHHHHH----ccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCC-cHHHHH
Confidence 888762 22222121 124567889999999997765 46999999999985 455443
No 53
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.82 E-value=2.9e-19 Score=188.69 Aligned_cols=159 Identities=24% Similarity=0.323 Sum_probs=108.9
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCC-cEEEecCCCccchh
Q 002713 586 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPE-NVHLIRGNHEAADI 664 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~-~v~llrGNHE~~~~ 664 (889)
++++||||||+++.|.++|+.+.............+||||||||||++|.||+.+|++++..+|. ++++|+||||.+.+
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 68999999999999999998765321100001126999999999999999999999999999876 68999999998876
Q ss_pred hhhcCC---------h------------------------------------------------------HHHHHHhCCC
Q 002713 665 NALFGF---------R------------------------------------------------------LECIERMGEN 681 (889)
Q Consensus 665 ~~~~gf---------~------------------------------------------------------~e~~~~~~~~ 681 (889)
..+... . .+....||-.
T Consensus 83 ~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~ 162 (304)
T cd07421 83 AFLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVP 162 (304)
T ss_pred hHhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCC
Confidence 544321 0 1222333322
Q ss_pred Cchh-----hhhhhhhhcCCCceEEEEcC------------eEEEecCCCCCCCcCHHHhhccc-CCcccCCCCchhhcc
Q 002713 682 DGIW-----AWTRFNQLFNCLPLAALIEK------------KIICMHGGIGRSIHSVEQIEKLE-RPITMDAGSIILMDL 743 (889)
Q Consensus 682 ~~~~-----~~~~~~~~f~~LPlaa~i~~------------~i~~vHgGi~~~~~~~~~i~~~~-rp~~~~~~~~~~~dl 743 (889)
.+.. +=....+|++.||+....++ +.+|||||+.|.+.--+|.+.+. +-... .-.|+
T Consensus 163 ~~~~~l~~avP~~H~~fl~~l~~~~~~~~~~~~~~~g~~~~~lifVHAGlrPg~pLe~Q~~~L~~~d~~~-----p~~~~ 237 (304)
T cd07421 163 HGSSDLIKAVPEEHKKFLRNLVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKSNSVEEQLKLLRTKDTSI-----PKIAP 237 (304)
T ss_pred cchHHHHHhCCHHHHHHHHhCCceEEeCcccccccccccccceEEEEcccCCCCChHHhhhhhhcccccc-----ccccc
Confidence 1111 11356788999999877654 23999999999976555655543 11111 23478
Q ss_pred ccCCCC
Q 002713 744 LWSDPT 749 (889)
Q Consensus 744 lWsdP~ 749 (889)
||....
T Consensus 238 l~~R~~ 243 (304)
T cd07421 238 LSGRKN 243 (304)
T ss_pred cccchh
Confidence 887764
No 54
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.79 E-value=2e-19 Score=188.12 Aligned_cols=120 Identities=26% Similarity=0.363 Sum_probs=90.3
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchh
Q 002713 585 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 664 (889)
Q Consensus 585 ~~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 664 (889)
++++||||||||+..|+++|+.+++.+..+ +++|||||||||++|.|||.+|.. ..++.|+||||.+.+
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D-----~li~lGDlvDrGp~s~~vl~~l~~------~~~~~v~GNHE~~~l 85 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRD-----LLISVGDLIDRGPQSLRCLQLLEE------HWVRAVRGNHEQMAL 85 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccC-----EEEEcCcccCCCcCHHHHHHHHHc------CCceEeeCchHHHHH
Confidence 489999999999999999999998763322 799999999999999999999965 358899999999988
Q ss_pred hhhcCChHHHHHHhCC-------CCchhhhhhhhhhcCCCceEEEEc---CeEEEecCCCC
Q 002713 665 NALFGFRLECIERMGE-------NDGIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 715 (889)
Q Consensus 665 ~~~~gf~~e~~~~~~~-------~~~~~~~~~~~~~f~~LPlaa~i~---~~i~~vHgGi~ 715 (889)
+...+-....+...+. ......+..+.++++.||+...++ +++++||||++
T Consensus 86 ~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 86 DALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 7653321111111110 011223456668999999998764 57999999984
No 55
>PHA02239 putative protein phosphatase
Probab=99.79 E-value=1.4e-18 Score=182.47 Aligned_cols=174 Identities=24% Similarity=0.353 Sum_probs=119.2
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCC--CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccch
Q 002713 586 PVKVFGDLHGQFGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 663 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l~~il~~~g~~--~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 663 (889)
++++||||||++..|.++++.+... +.+ .+||||||||||++|.||+.+|+.++. .+.++++|+||||.+.
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d------~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~ 74 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEE------TIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEF 74 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCC------EEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHH
Confidence 5899999999999999999988543 223 799999999999999999999999754 4568999999999987
Q ss_pred hhhhcC--------------ChHHHHHHhCCCCc---------------------------hhhhhhhhhhcCCCceEEE
Q 002713 664 INALFG--------------FRLECIERMGENDG---------------------------IWAWTRFNQLFNCLPLAAL 702 (889)
Q Consensus 664 ~~~~~g--------------f~~e~~~~~~~~~~---------------------------~~~~~~~~~~f~~LPlaa~ 702 (889)
++...+ ...+.+..|+-... ...+..+..+++.||+...
T Consensus 75 l~~~~~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~ 154 (235)
T PHA02239 75 YNIMENVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYK 154 (235)
T ss_pred HHHHhCchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEE
Confidence 654321 11334455542211 0123455668899999988
Q ss_pred EcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcC
Q 002713 703 IEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNK 782 (889)
Q Consensus 703 i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~ 782 (889)
.+ +++|||||+.|... +++ +-..+++|.+. . .+.. +|
T Consensus 155 ~~-~~ifVHAGi~p~~~-~~~--------------q~~~~llWiR~-f-------~~~~-------~g------------ 191 (235)
T PHA02239 155 ED-KYIFSHSGGVSWKP-VEE--------------QTIDQLIWSRD-F-------QPRK-------DG------------ 191 (235)
T ss_pred EC-CEEEEeCCCCCCCC-hhh--------------CCHhHeEEecc-c-------CCCC-------CC------------
Confidence 86 59999999987622 211 13468899875 2 1111 11
Q ss_pred CeEEEEeccccccceEEecCCeEEEEecc
Q 002713 783 LQLIIRAHECVMDGFERFAQGQLITLFSA 811 (889)
Q Consensus 783 l~~iiR~H~~~~~G~~~~~~~~~itvfSa 811 (889)
+.||-||+++..+.... .++.|.|-.-
T Consensus 192 -~~vV~GHTp~~~~~~~~-~~~~I~IDtG 218 (235)
T PHA02239 192 -FTYVCGHTPTDSGEVEI-NGDMLMCDVG 218 (235)
T ss_pred -cEEEECCCCCCCCcccc-cCCEEEeecC
Confidence 26788899886654322 2345666654
No 56
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.78 E-value=6.8e-19 Score=182.84 Aligned_cols=147 Identities=27% Similarity=0.373 Sum_probs=104.6
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchh
Q 002713 585 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 664 (889)
Q Consensus 585 ~~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 664 (889)
++++|||||||++.+|.++++..++.+..+ .++|+|||||||+++.||+.+|.. ..+++|+||||.+.+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d-----~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~ 69 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARD-----RLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAI 69 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCC-----EEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHH
Confidence 479999999999999999999988653221 799999999999999999999875 368999999999998
Q ss_pred hhhcC--ChHHHHHHhCCCC-----chhhhhhhhhhcCCCceEEEEc---CeEEEecCCCCCCCcCHHHhhcccCCcccC
Q 002713 665 NALFG--FRLECIERMGEND-----GIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIGRSIHSVEQIEKLERPITMD 734 (889)
Q Consensus 665 ~~~~g--f~~e~~~~~~~~~-----~~~~~~~~~~~f~~LPlaa~i~---~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~ 734 (889)
....+ +..+.+.+.+... ....++.+.++|+.||+...++ .+++|||||+.+... .+.+.. .+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~-~~~~~~--~~~~-- 144 (207)
T cd07424 70 DALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDW-SDGVGA--VTLR-- 144 (207)
T ss_pred hHhhCCCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchh-hhhhhc--cccC--
Confidence 87655 2333434333221 0113455778999999999875 479999999965531 111110 0111
Q ss_pred CCCchhhccccCCCC
Q 002713 735 AGSIILMDLLWSDPT 749 (889)
Q Consensus 735 ~~~~~~~dllWsdP~ 749 (889)
.....+++|++|.
T Consensus 145 --~~~~~~~~w~~~~ 157 (207)
T cd07424 145 --PEDIEELLWSRTR 157 (207)
T ss_pred --cccceeeeeccch
Confidence 1245678998765
No 57
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.74 E-value=5.3e-18 Score=177.04 Aligned_cols=120 Identities=25% Similarity=0.300 Sum_probs=87.3
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchh
Q 002713 585 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 664 (889)
Q Consensus 585 ~~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 664 (889)
++++||||||||+..|+++|+.+.+.+..+ .++|||||||||+++.||+.+|.+ .+++.||||||.+.+
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d-----~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~ 83 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETD-----LLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMAL 83 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCC-----EEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHH
Confidence 489999999999999999999987654332 799999999999999999999864 468999999999988
Q ss_pred hhhcCChHHHHHHhCCC-------CchhhhhhhhhhcCCCceEEEEc---CeEEEecCCCC
Q 002713 665 NALFGFRLECIERMGEN-------DGIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 715 (889)
Q Consensus 665 ~~~~gf~~e~~~~~~~~-------~~~~~~~~~~~~f~~LPlaa~i~---~~i~~vHgGi~ 715 (889)
+....-....+...+.. ...........+++.||+...+. .++++||||++
T Consensus 84 ~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 84 DAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 75422111111111100 00112233456889999998774 47999999983
No 58
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.65 E-value=1.3e-14 Score=153.60 Aligned_cols=282 Identities=17% Similarity=0.205 Sum_probs=205.6
Q ss_pred cCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCC--CcEEEecCCCCCCcc
Q 002713 22 TDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLT--RKWTRIRPAGEPPSP 99 (889)
Q Consensus 22 ~~~~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t--~~W~~l~~~g~~P~~ 99 (889)
..|++|.+--+-+...+ ++.+||-=|.. -...|.+|+.. ..|+++....- .+
T Consensus 29 ~lPdlPvg~KnG~Ga~i------g~~~YVGLGs~------------------G~afy~ldL~~~~k~W~~~a~FpG--~~ 82 (381)
T COG3055 29 QLPDLPVGFKNGAGALI------GDTVYVGLGSA------------------GTAFYVLDLKKPGKGWTKIADFPG--GA 82 (381)
T ss_pred cCCCCCcccccccccee------cceEEEEeccC------------------CccceehhhhcCCCCceEcccCCC--cc
Confidence 56778887777788888 78898877732 34578888876 58999985432 57
Q ss_pred cCccEEEEECCEEEEEcCcCCCC----CccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCC
Q 002713 100 RAAHAAAAVGTMVVFQGGIGPAG----HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGK 175 (889)
Q Consensus 100 R~~haa~~~~~~Iyv~GG~~~~~----~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~ 175 (889)
|...++++++++||+|||.+... ...+|+|+||+.+++ |+++.+ ..|..-.+|+++...+..+|++||.+..
T Consensus 83 rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ns--W~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~ 158 (381)
T COG3055 83 RNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNS--WHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQN 158 (381)
T ss_pred cccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCCh--hheecc--ccccccccceeEecCCceEEEEccccHH
Confidence 99999999999999999987443 356999999999965 999955 3456688999988888899999996421
Q ss_pred ----------------------------------cccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEE
Q 002713 176 ----------------------------------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLL 221 (889)
Q Consensus 176 ----------------------------------~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v 221 (889)
....+++.|++.++ +|+.+.. .|..-...++++..++++.+
T Consensus 159 if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n--~W~~~G~---~pf~~~aGsa~~~~~n~~~l 233 (381)
T COG3055 159 IFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN--QWRNLGE---NPFYGNAGSAVVIKGNKLTL 233 (381)
T ss_pred hhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--hhhhcCc---CcccCccCcceeecCCeEEE
Confidence 13468899999999 9988743 35544455778888998999
Q ss_pred EccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCc------cceeEEEEECCEEEEEcCCCC---------------C
Q 002713 222 CGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSP------RYQHAAVFVGARLHVTGGALR---------------G 280 (889)
Q Consensus 222 ~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~------R~~hs~~~~~~~lyV~GG~~~---------------~ 280 (889)
+-|.-..+.....++.++...+ .-+|..++..++.. ..++-.-..++.++|.||..- .
T Consensus 234 InGEiKpGLRt~~~k~~~~~~~-~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~ 312 (381)
T COG3055 234 INGEIKPGLRTAEVKQADFGGD-NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHE 312 (381)
T ss_pred EcceecCCccccceeEEEeccC-ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhccccccc
Confidence 9998777776777777776633 34666665443222 222222334788999999652 1
Q ss_pred CCCccCCCcEEEEECCCCeEEeccCCccccCCCCCCCCCCCccCcccccceEEEEECCEEEEEcCCCCCCCcccccccEE
Q 002713 281 GRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGAFCADILLDDFL 360 (889)
Q Consensus 281 ~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~h~~~~v~~~lyv~GG~~~~~~~~~~~~d~~ 360 (889)
+-......+|++|| .+.|+.+..++. ++++.+++..++.||++||-... ...+.+++
T Consensus 313 Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~------------------~l~YG~s~~~nn~vl~IGGE~~~---Gka~~~v~ 369 (381)
T COG3055 313 GLSKSWNSEVYIFD--NGSWKIVGELPQ------------------GLAYGVSLSYNNKVLLIGGETSG---GKATTRVY 369 (381)
T ss_pred chhhhhhceEEEEc--CCceeeecccCC------------------CccceEEEecCCcEEEEccccCC---CeeeeeEE
Confidence 22233467899998 899999998844 88889999999999999995441 34455555
Q ss_pred Ec
Q 002713 361 VA 362 (889)
Q Consensus 361 ~l 362 (889)
.+
T Consensus 370 ~l 371 (381)
T COG3055 370 SL 371 (381)
T ss_pred EE
Confidence 43
No 59
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.59 E-value=3.6e-16 Score=169.65 Aligned_cols=317 Identities=17% Similarity=0.267 Sum_probs=213.6
Q ss_pred CCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccCccE
Q 002713 25 DAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHA 104 (889)
Q Consensus 25 ~~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~P~~R~~ha 104 (889)
.-|..|.||.|+..+. .+.||++||..+... ..|+|.|....+.|..++..+..|..|.+|-
T Consensus 256 ~~p~~RgGHQMV~~~~----~~CiYLYGGWdG~~~--------------l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQ----TECVYLYGGWDGTQD--------------LADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred cCccccCcceEEEeCC----CcEEEEecCcccchh--------------HHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 4688999999999843 569999999987653 7899999999999999998888999999999
Q ss_pred EEEECC--EEEEEcCcCCCC-----CccCcEEEEEccCCceEEEEEeec---CCCCCCccccEEEEECC-cEEEEEecCC
Q 002713 105 AAAVGT--MVVFQGGIGPAG-----HSTDDLYVLDLTNDKFKWHRVVVQ---GQGPGPRYGHVMDLVSQ-RYLVSVSGND 173 (889)
Q Consensus 105 a~~~~~--~Iyv~GG~~~~~-----~~~~dv~~yD~~t~~~~W~~v~~~---g~~p~~R~~hs~~~~~~-~~lyv~GG~~ 173 (889)
++.... ++|+.|-+-+.. ..-.|+|+||.+++. |.-+... ...|..-+.|.|++.++ +++|||||+.
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~--W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT--WMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEecCCce--eEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 988765 999999864222 234799999999955 9877532 23688999999999865 3699999984
Q ss_pred CC---cccCcEEEEecCCCCceEEEccCC--CCC-----CCcccceEEEEe-cCCEEEEEccCCCCCCcccceEEEeccc
Q 002713 174 GK---RVLSDAWALDTAQKPYVWQRLNPE--GDR-----PSARMYATASAR-SDGMFLLCGGRDASGAPLADAYGLLMHR 242 (889)
Q Consensus 174 ~~---~~lndv~~yd~~t~~~~W~~v~~~--~~~-----P~~r~~~~a~~~-~~~~l~v~GG~~~~~~~~~dv~~l~~~~ 242 (889)
-. -....+|.||+... .|..+... ... -..|.+|++-.. .+.++|+|||...+.+ ++-.++|++..
T Consensus 396 ~~~~e~~f~GLYaf~~~~~--~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E-l~L~f~y~I~~ 472 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQ--TWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE-LNLFFSYDIDS 472 (723)
T ss_pred ccCCCccccceEEEecCCc--cHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE-Eeehhcceecc
Confidence 32 34788999999998 78766421 111 235777777655 4668999998765543 44455554432
Q ss_pred CCeeEEE----eCCCCCCCccceeEEEEE---CCEEEEEcCCCCCCC--CccCCCcEEEEECCCCeEEeccCCccccCCC
Q 002713 243 NGQWEWT----LAPGVAPSPRYQHAAVFV---GARLHVTGGALRGGR--AIEGEAAVAVLDTAAGVWLDRNGLVTSSRTS 313 (889)
Q Consensus 243 ~~~W~w~----~~~~~~p~~R~~hs~~~~---~~~lyV~GG~~~~~~--~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~ 313 (889)
.+.=.-. ....+.|++-+.-- +.. .+.|++.-|...... ..+..+++|+|+..+..|..+..+...+..+
T Consensus 473 E~~~~~s~~~k~dsS~~pS~~f~qR-s~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~ 551 (723)
T KOG2437|consen 473 EHVDIISDGTKKDSSMVPSTGFTQR-ATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKDN 551 (723)
T ss_pred ccchhhhccCcCccccCCCcchhhh-cccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHHhhccC
Confidence 2100000 01122222221111 222 456777767643221 1223689999999999999887664322211
Q ss_pred CC------CCCCCCccCcccccceEEEEE--CCEEEEEcCCCCCCCcc-cccccEEEccCC
Q 002713 314 KG------HGEHDPSLELMRRCRHASASI--GVRIYIYGGLKGAFCAD-ILLDDFLVAENS 365 (889)
Q Consensus 314 ~~------~~~~~~~~~p~~R~~h~~~~v--~~~lyv~GG~~~~~~~~-~~~~d~~~l~~~ 365 (889)
.+ ...++....+.+|+.|+.++. ..-+|.+||..+..++. ..++|.|.++..
T Consensus 552 dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~ 612 (723)
T KOG2437|consen 552 DTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKIC 612 (723)
T ss_pred CceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhc
Confidence 11 112223344778888887765 44599999998866655 556788876644
No 60
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.59 E-value=6.2e-14 Score=148.54 Aligned_cols=245 Identities=20% Similarity=0.339 Sum_probs=174.8
Q ss_pred cceeecCCCCC-CCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCC
Q 002713 17 ETYWDTDEDAP-GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGE 95 (889)
Q Consensus 17 ~~~w~~~~~~P-~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g~ 95 (889)
...|+..++.| .+|.+.+++++ +++||||||....... .-.+.+|+|+||+.+++|+++.+..
T Consensus 69 ~k~W~~~a~FpG~~rnqa~~a~~------~~kLyvFgG~Gk~~~~---------~~~~~nd~Y~y~p~~nsW~kl~t~s- 132 (381)
T COG3055 69 GKGWTKIADFPGGARNQAVAAVI------GGKLYVFGGYGKSVSS---------SPQVFNDAYRYDPSTNSWHKLDTRS- 132 (381)
T ss_pred CCCceEcccCCCcccccchheee------CCeEEEeeccccCCCC---------CceEeeeeEEecCCCChhheecccc-
Confidence 36799999988 58999999999 9999999999755431 1237899999999999999998663
Q ss_pred CCcccCccEEEEECC-EEEEEcCcCCC---------------------------------CCccCcEEEEEccCCceEEE
Q 002713 96 PPSPRAAHAAAAVGT-MVVFQGGIGPA---------------------------------GHSTDDLYVLDLTNDKFKWH 141 (889)
Q Consensus 96 ~P~~R~~haa~~~~~-~Iyv~GG~~~~---------------------------------~~~~~dv~~yD~~t~~~~W~ 141 (889)
|..-.+|+++.+++ +|+++||++.. .....+++.||+.++. |+
T Consensus 133 -P~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~--W~ 209 (381)
T COG3055 133 -PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQ--WR 209 (381)
T ss_pred -ccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccch--hh
Confidence 45678899999887 99999997510 0114688899999955 99
Q ss_pred EEeecC-CCCCCccccEEEEECCcEEEEEecCCC-CcccCcEEEEecCCCCceEEEccCCCCC----CCcccceEEEEec
Q 002713 142 RVVVQG-QGPGPRYGHVMDLVSQRYLVSVSGNDG-KRVLSDAWALDTAQKPYVWQRLNPEGDR----PSARMYATASARS 215 (889)
Q Consensus 142 ~v~~~g-~~p~~R~~hs~~~~~~~~lyv~GG~~~-~~~lndv~~yd~~t~~~~W~~v~~~~~~----P~~r~~~~a~~~~ 215 (889)
.+ | .+..++++++. +..++.+.++-|.-. .-+...++++++..+..+|.+++....+ +..-. .+.....
T Consensus 210 ~~---G~~pf~~~aGsa~-~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvA-Gaf~G~s 284 (381)
T COG3055 210 NL---GENPFYGNAGSAV-VIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVA-GAFSGKS 284 (381)
T ss_pred hc---CcCcccCccCcce-eecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccc-eecccee
Confidence 88 6 45567777444 666667777777532 2345678888988776799999654211 11111 1222346
Q ss_pred CCEEEEEccCCCCC------------------CcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCC
Q 002713 216 DGMFLLCGGRDASG------------------APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGA 277 (889)
Q Consensus 216 ~~~l~v~GG~~~~~------------------~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~ 277 (889)
++.++|.||..-.+ ...+++|.|+. + .|... +..|.+++...++..++.||++||.
T Consensus 285 ~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~---g--~Wk~~-GeLp~~l~YG~s~~~nn~vl~IGGE 358 (381)
T COG3055 285 NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN---G--SWKIV-GELPQGLAYGVSLSYNNKVLLIGGE 358 (381)
T ss_pred CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC---C--ceeee-cccCCCccceEEEecCCcEEEEccc
Confidence 77899999874321 34578898883 3 45455 4447788888888899999999998
Q ss_pred CCCCCCccCCCcEEEEE
Q 002713 278 LRGGRAIEGEAAVAVLD 294 (889)
Q Consensus 278 ~~~~~~~~~~~~v~~yD 294 (889)
...+.. ...|+.+-
T Consensus 359 ~~~Gka---~~~v~~l~ 372 (381)
T COG3055 359 TSGGKA---TTRVYSLS 372 (381)
T ss_pred cCCCee---eeeEEEEE
Confidence 876654 34454443
No 61
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.27 E-value=3.8e-12 Score=138.77 Aligned_cols=199 Identities=19% Similarity=0.306 Sum_probs=146.1
Q ss_pred eEEEEEeecC-------CCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccce
Q 002713 138 FKWHRVVVQG-------QGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYA 209 (889)
Q Consensus 138 ~~W~~v~~~g-------~~p~~R~~hs~~~~-~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~ 209 (889)
..|.+++... ..|..|.||-|+.. +++.+|++||++|...+.|.|.|+...+ .|+.+..-+..|..|..|
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~--~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKEN--QWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcc--eeEEeecCCCCCcchhhh
Confidence 4588876554 56999999999766 4459999999999999999999999999 999998877789999999
Q ss_pred EEEEe-cCCEEEEEccCCCCC-----CcccceEEEecccCCeeEEEeCC---CCCCCccceeEEEEECCE--EEEEcCCC
Q 002713 210 TASAR-SDGMFLLCGGRDASG-----APLADAYGLLMHRNGQWEWTLAP---GVAPSPRYQHAAVFVGAR--LHVTGGAL 278 (889)
Q Consensus 210 ~a~~~-~~~~l~v~GG~~~~~-----~~~~dv~~l~~~~~~~W~w~~~~---~~~p~~R~~hs~~~~~~~--lyV~GG~~ 278 (889)
-++.- ...+||+.|-+-... ...+|+|.||..++ .|...... .-.|..-+.|.+++.+.+ |||+||+.
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~-~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN-TWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc-eeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 98854 234899999653221 23679999999877 44433322 124788999999999887 99999985
Q ss_pred CCCCCccCCCcEEEEECCCCeEEeccCCccccCCCCCCCCCCCccCcccccceEEEEE--CCEEEEEcCCCC
Q 002713 279 RGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASI--GVRIYIYGGLKG 348 (889)
Q Consensus 279 ~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~h~~~~v--~~~lyv~GG~~~ 348 (889)
-... -.....++.||+....|..+..-..... +.. ..-..|-+|++-.. +..+|+|||-..
T Consensus 396 ~~~~-e~~f~GLYaf~~~~~~w~~l~e~~~~~~---~vv-----E~~~sR~ghcmE~~~~n~~ly~fggq~s 458 (723)
T KOG2437|consen 396 LTCN-EPQFSGLYAFNCQCQTWKLLREDSCNAG---PVV-----EDIQSRIGHCMEFHSKNRCLYVFGGQRS 458 (723)
T ss_pred ccCC-CccccceEEEecCCccHHHHHHHHhhcC---cch-----hHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence 4332 1225679999999999987654311100 000 00126777776665 557999999766
No 62
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.00 E-value=1.8e-09 Score=106.57 Aligned_cols=162 Identities=23% Similarity=0.240 Sum_probs=99.8
Q ss_pred CeEEEecCCCCHHHH---HHHH-HHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHH--HHHhhcCCCcEEEecCCC
Q 002713 586 PVKVFGDLHGQFGDL---MRLF-DEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLL--LALKIEYPENVHLIRGNH 659 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l---~~il-~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll--~~lk~~~p~~v~llrGNH 659 (889)
+|+++||+|+..... .+.+ ........+ .+|++||++|+|..+.+..... +..+...+..+++++|||
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPD------FIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTS------EEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCC------EEEeeccccccccccccchhhhccchhhhhcccccccccccc
Confidence 589999999999987 3333 322222223 6899999999999988877765 555666778899999999
Q ss_pred ccchhhhhcCChHHHHHHhCCC------------------------------CchhhhhhhhhhcCCCceEEEEcCeEEE
Q 002713 660 EAADINALFGFRLECIERMGEN------------------------------DGIWAWTRFNQLFNCLPLAALIEKKIIC 709 (889)
Q Consensus 660 E~~~~~~~~gf~~e~~~~~~~~------------------------------~~~~~~~~~~~~f~~LPlaa~i~~~i~~ 709 (889)
|.......+............. ............+.....+......|++
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 155 (200)
T PF00149_consen 76 DYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVF 155 (200)
T ss_dssp SSHHHHHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEE
T ss_pred ccceeccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccccccceeEE
Confidence 9987655443222221110000 0000001111222222333444557888
Q ss_pred ecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcCCeEEEEe
Q 002713 710 MHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRA 789 (889)
Q Consensus 710 vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~ 789 (889)
+|.++.+........ .....+.+.+..++++.++++++-|
T Consensus 156 ~H~p~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~G 195 (200)
T PF00149_consen 156 THHPPYSSSSDSSSY----------------------------------------GNESKGREALEELLKKYNVDLVLSG 195 (200)
T ss_dssp ESSSSSTTSSSTHHH----------------------------------------SSEEEHHHHHHHHHHHTTCSEEEEE
T ss_pred EecCCCCcccccccc----------------------------------------chhhccHHHHHHHHhhCCCCEEEeC
Confidence 888887552211110 0145788999999999999999999
Q ss_pred cccc
Q 002713 790 HECV 793 (889)
Q Consensus 790 H~~~ 793 (889)
|+-.
T Consensus 196 H~H~ 199 (200)
T PF00149_consen 196 HTHR 199 (200)
T ss_dssp SSSS
T ss_pred ceec
Confidence 9853
No 63
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.85 E-value=3.6e-09 Score=103.01 Aligned_cols=147 Identities=35% Similarity=0.502 Sum_probs=118.9
Q ss_pred hhhhhcCChHHHHHHhCCCCchhhhhh---hhhhcCCCceEEEEcC-eEEEecCCCCCCC-cCHHHhhcccCCc--ccCC
Q 002713 663 DINALFGFRLECIERMGENDGIWAWTR---FNQLFNCLPLAALIEK-KIICMHGGIGRSI-HSVEQIEKLERPI--TMDA 735 (889)
Q Consensus 663 ~~~~~~gf~~e~~~~~~~~~~~~~~~~---~~~~f~~LPlaa~i~~-~i~~vHgGi~~~~-~~~~~i~~~~rp~--~~~~ 735 (889)
.++..+++.++|...++.. ..|.. +.++|+.||+.+++++ .++|.|+++++.+ ..+++++.+.|.. .+..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~---~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 78 (155)
T COG0639 2 LLTALYGFYDEKLRKYGEE---LEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPH 78 (155)
T ss_pred hhhhhhchhHHhhhhcCCc---eeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCC
Confidence 4566788888888777543 35666 9999999999999998 9999999999976 6788888887765 4433
Q ss_pred CCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccC
Q 002713 736 GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYC 815 (889)
Q Consensus 736 ~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~ 815 (889)
.+ ...+.+|++|... ....|.+++||.+. .| .+....|+..+....|.|+|+.+..++...+.+..+|+|++++||
T Consensus 79 ~g-~~~~~~~~~~~~~-~~~~w~~~~~g~~~-~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 79 AG-HTHDLLWSDPDGG-DRRIWNPGPRGVPR-DG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred cc-ccccccCCCCCCC-cccccccCCCCCCc-cc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 44 4566699998752 24678999999983 44 688889998888888999999999999988776899999999997
Q ss_pred C
Q 002713 816 G 816 (889)
Q Consensus 816 ~ 816 (889)
.
T Consensus 155 ~ 155 (155)
T COG0639 155 Y 155 (155)
T ss_pred C
Confidence 3
No 64
>PF13964 Kelch_6: Kelch motif
Probab=98.77 E-value=1.6e-08 Score=79.70 Aligned_cols=50 Identities=38% Similarity=0.767 Sum_probs=42.8
Q ss_pred CcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCccc
Q 002713 29 PRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPR 100 (889)
Q Consensus 29 pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~P~~R 100 (889)
||.+|+++++ +++||||||...... .++++++||+.+++|+++++ +|.||
T Consensus 1 pR~~~s~v~~------~~~iyv~GG~~~~~~-------------~~~~v~~yd~~t~~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV------GGKIYVFGGYDNSGK-------------YSNDVERYDPETNTWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEE------CCEEEEECCCCCCCC-------------ccccEEEEcCCCCcEEECCC---CCCCC
Confidence 7999999999 899999999986421 58999999999999999984 45666
No 65
>PLN02772 guanylate kinase
Probab=98.73 E-value=5.1e-08 Score=108.19 Aligned_cols=87 Identities=17% Similarity=0.342 Sum_probs=75.0
Q ss_pred CCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccCccEEE
Q 002713 27 PGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAA 106 (889)
Q Consensus 27 P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~ 106 (889)
+.|+.+|+++++ ++++|||||...... ..+.+|+||..+++|......|..|.||.+|++|
T Consensus 22 ~~~~~~~tav~i------gdk~yv~GG~~d~~~-------------~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~ 82 (398)
T PLN02772 22 VKPKNRETSVTI------GDKTYVIGGNHEGNT-------------LSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAV 82 (398)
T ss_pred CCCCCcceeEEE------CCEEEEEcccCCCcc-------------ccceEEEEECCCCcEecccccCCCCCCCCcceEE
Confidence 468999999999 999999999754221 4799999999999999999999999999999999
Q ss_pred EEC-CEEEEEcCcCCCCCccCcEEEEEccC
Q 002713 107 AVG-TMVVFQGGIGPAGHSTDDLYVLDLTN 135 (889)
Q Consensus 107 ~~~-~~Iyv~GG~~~~~~~~~dv~~yD~~t 135 (889)
+++ ++|+|+++.++ ..+++|.+...|
T Consensus 83 v~~~~rilv~~~~~~---~~~~~w~l~~~t 109 (398)
T PLN02772 83 VLNKDRILVIKKGSA---PDDSIWFLEVDT 109 (398)
T ss_pred EECCceEEEEeCCCC---CccceEEEEcCC
Confidence 995 69999987543 358899998877
No 66
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.73 E-value=3.4e-07 Score=90.45 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=48.0
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccc
Q 002713 586 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 662 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 662 (889)
+|.+++|+||++..+.++++.+.. .+ .++++||+++++.... ++. ...+++++||||..
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d------~ii~~GD~~~~~~~~~--------~~~--~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VD------LIIHAGDVLYPGPLNE--------LEL--KAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CC------EEEECCccccccccch--------hhc--CCcEEEEeCCCCCc
Confidence 478999999999999999998754 23 7999999999998765 222 24699999999975
No 67
>PLN02772 guanylate kinase
Probab=98.72 E-value=5.5e-08 Score=107.92 Aligned_cols=89 Identities=17% Similarity=0.340 Sum_probs=78.1
Q ss_pred CcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCc
Q 002713 97 PSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKR 176 (889)
Q Consensus 97 P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~ 176 (889)
+.++.+|+++++++++||+||..+.+..++.+|+||+.+ ++|....+.|..|.+|.+|+++++++..|+|+++....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t--~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKIT--NNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCC--CcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC-
Confidence 468999999999999999999877666889999999999 55999999999999999999999988899999876543
Q ss_pred ccCcEEEEecCCC
Q 002713 177 VLSDAWALDTAQK 189 (889)
Q Consensus 177 ~lndv~~yd~~t~ 189 (889)
-.++|.+.+.|.
T Consensus 99 -~~~~w~l~~~t~ 110 (398)
T PLN02772 99 -DDSIWFLEVDTP 110 (398)
T ss_pred -ccceEEEEcCCH
Confidence 378999988874
No 68
>PF13964 Kelch_6: Kelch motif
Probab=98.71 E-value=3.1e-08 Score=78.08 Aligned_cols=50 Identities=30% Similarity=0.583 Sum_probs=45.0
Q ss_pred ccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCc
Q 002713 99 PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (889)
Q Consensus 99 ~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R 153 (889)
||.+|++++++++|||+||.......++++|+||+.+++ |+.+ +++|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~---~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNT--WEQL---PPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCc--EEEC---CCCCCCC
Confidence 699999999999999999987657789999999999955 9999 7888887
No 69
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.69 E-value=3.6e-08 Score=77.43 Aligned_cols=49 Identities=41% Similarity=0.783 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE
Q 002713 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV 108 (889)
Q Consensus 45 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~ 108 (889)
|++||||||...... ..++|+|+||+.+++|+++ +..|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~------------~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGG------------TRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCC------------CEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 578999999984222 1689999999999999988 567899999999874
No 70
>PRK09453 phosphodiesterase; Provisional
Probab=98.65 E-value=8.9e-08 Score=97.45 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=52.8
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC--------hHHHHHHHHHHhhcCCCcEEEecC
Q 002713 586 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH--------SLETITLLLALKIEYPENVHLIRG 657 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~--------s~evl~ll~~lk~~~p~~v~llrG 657 (889)
++.|++|+||++..|.++++.+.....+ .++++||++|+|++ ..+++.+|..+ ...+++++|
T Consensus 2 ri~viSD~Hg~~~~~~~~l~~~~~~~~d------~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~G 71 (182)
T PRK09453 2 KLMFASDTHGSLPATEKALELFAQSGAD------WLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVRG 71 (182)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhcCCC------EEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEcc
Confidence 5899999999999999998877433333 79999999999873 45666666543 246999999
Q ss_pred CCccch
Q 002713 658 NHEAAD 663 (889)
Q Consensus 658 NHE~~~ 663 (889)
|||...
T Consensus 72 NhD~~~ 77 (182)
T PRK09453 72 NCDSEV 77 (182)
T ss_pred CCcchh
Confidence 999743
No 71
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.63 E-value=4.3e-07 Score=89.44 Aligned_cols=60 Identities=30% Similarity=0.495 Sum_probs=43.9
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccch
Q 002713 586 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 663 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 663 (889)
+|.++||+|++...+.++++.+. ..+ .++++||++|+ .+++.++..+ .+++++||||...
T Consensus 2 ki~~~sD~H~~~~~~~~~~~~~~--~~d------~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~ 61 (156)
T PF12850_consen 2 KIAVISDLHGNLDALEAVLEYIN--EPD------FVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWA 61 (156)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHT--TES------EEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTH
T ss_pred EEEEEeCCCCChhHHHHHHHHhc--CCC------EEEECCCchhH----HHHHHHHhcC------CEEEEeCCccccc
Confidence 58999999999999999999982 122 68889999993 7777777554 5999999999644
No 72
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.54 E-value=2e-07 Score=73.21 Aligned_cols=49 Identities=33% Similarity=0.731 Sum_probs=40.1
Q ss_pred CcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCC
Q 002713 29 PRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAG 94 (889)
Q Consensus 29 pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g 94 (889)
||++|+++++ ++|||||||...... ....+++++||+.+++|+.+++++
T Consensus 1 ~r~~hs~~~~------~~kiyv~GG~~~~~~-----------~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVL------DGKIYVFGGYGTDNG-----------GSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEE------CCEEEEECCcccCCC-----------CcccceeEEEECCCCEEeecCCCC
Confidence 6999999999 999999999921111 125899999999999999988653
No 73
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.52 E-value=2e-06 Score=85.41 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=46.5
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCC-CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCcc
Q 002713 586 PVKVFGDLHGQFGDLMRLFDEYGFP-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEA 661 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l~~il~~~g~~-~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~ 661 (889)
++.|++|+||++.++..+++..... ..+ .++++||++ +.+++.+|..+. ..++.++||||.
T Consensus 2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~ 63 (158)
T TIGR00040 2 KILVISDTHGPLRATELPVELFNLESNVD------LVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDG 63 (158)
T ss_pred EEEEEecccCCcchhHhHHHHHhhccCCC------EEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCc
Confidence 5899999999998777666655443 233 789999999 467777776543 359999999998
No 74
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.50 E-value=3.1e-07 Score=72.05 Aligned_cols=48 Identities=29% Similarity=0.500 Sum_probs=40.0
Q ss_pred ccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccCC
Q 002713 258 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (889)
Q Consensus 258 ~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (889)
+|++|++++++++|||+||+ .........+++++||+++.+|+.+..+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~-~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGY-GTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCc-ccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 1122233478999999999999998865
No 75
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.50 E-value=2.5e-07 Score=72.60 Aligned_cols=48 Identities=33% Similarity=0.756 Sum_probs=42.2
Q ss_pred CCEEEEEcCcC-CCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEE
Q 002713 109 GTMVVFQGGIG-PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV 161 (889)
Q Consensus 109 ~~~Iyv~GG~~-~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~ 161 (889)
+++||||||.+ .....++++|+||+.+. +|+++ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~--~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTN--TWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCC--EEEEC---CCCCCCccceEEEEC
Confidence 57899999987 46788999999999985 59988 889999999999864
No 76
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.42 E-value=1.4e-06 Score=91.23 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=72.7
Q ss_pred CeEEEecCCCCHHHHH-HHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchh
Q 002713 586 PVKVFGDLHGQFGDLM-RLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 664 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l~-~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 664 (889)
+|.++|||||++.... +.++..+ + + .+||+||+++. +.+++..|..+ +..++.++||||.+..
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~~--p-D------~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLLQ--P-D------LVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYD 65 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhccC--C-C------EEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCccccc
Confidence 5899999999987642 3343332 2 2 78999999864 56777766554 2458999999997542
Q ss_pred hh---hcC-----------------------------------------C-hHHHHHHhCCCCchhhhhhhhhhcCCCce
Q 002713 665 NA---LFG-----------------------------------------F-RLECIERMGENDGIWAWTRFNQLFNCLPL 699 (889)
Q Consensus 665 ~~---~~g-----------------------------------------f-~~e~~~~~~~~~~~~~~~~~~~~f~~LPl 699 (889)
.. .+. + ..++...|+ ....++.+..+++.++.
T Consensus 66 ~~~~~k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fg---i~s~~eA~~~ive~~~~ 142 (238)
T cd07397 66 ATFRKKGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYG---VISLEESAQRIIAAAKK 142 (238)
T ss_pred ccccchHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhC---CCCHHHHHHHHHHHhhh
Confidence 20 000 0 124555554 22455677777888864
Q ss_pred EEEEcCeEEEecCCCCCC
Q 002713 700 AALIEKKIICMHGGIGRS 717 (889)
Q Consensus 700 aa~i~~~i~~vHgGi~~~ 717 (889)
+......||+.|+++.-.
T Consensus 143 ~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 143 APPDLPLILLAHNGPSGL 160 (238)
T ss_pred cCCCCCeEEEeCcCCcCC
Confidence 444445799999998644
No 77
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.42 E-value=1.8e-05 Score=82.28 Aligned_cols=163 Identities=15% Similarity=0.235 Sum_probs=100.6
Q ss_pred EEEEEcCcCCCCCccCcEEEEEccCCc------eEEEEEeecCCCCCCccccEEEEE---CCcEEEEEecCCC----C--
Q 002713 111 MVVFQGGIGPAGHSTDDLYVLDLTNDK------FKWHRVVVQGQGPGPRYGHVMDLV---SQRYLVSVSGNDG----K-- 175 (889)
Q Consensus 111 ~Iyv~GG~~~~~~~~~dv~~yD~~t~~------~~W~~v~~~g~~p~~R~~hs~~~~---~~~~lyv~GG~~~----~-- 175 (889)
..+|.||.++++..++.+|++...+.. ....+-...|+.|.+||+|++.++ +....++|||+.- .
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 677889999999999999998876532 334443456999999999999888 4558899999742 1
Q ss_pred --------cccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCC-CcccceEEEecccC---
Q 002713 176 --------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG-APLADAYGLLMHRN--- 243 (889)
Q Consensus 176 --------~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~-~~~~dv~~l~~~~~--- 243 (889)
.+...|+.+|++-+ ..+.- ...+.-....+|.+.+ .++.+|++||..-.. .....++++...--
T Consensus 120 TenWNsVvDC~P~VfLiDleFG--C~tah-~lpEl~dG~SFHvsla-r~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGS 195 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFG--CCTAH-TLPELQDGQSFHVSLA-RNDCVYILGGHSLESDSRPPRLYRLKVDLLLGS 195 (337)
T ss_pred hhhcceeccCCCeEEEEecccc--ccccc-cchhhcCCeEEEEEEe-cCceEEEEccEEccCCCCCCcEEEEEEeecCCC
Confidence 23457888888776 44332 2233334566666665 566999999974432 22345666554311
Q ss_pred CeeEEEeCCCCCCCccceeEEEEE---CCEEEEEcCCCCCC
Q 002713 244 GQWEWTLAPGVAPSPRYQHAAVFV---GARLHVTGGALRGG 281 (889)
Q Consensus 244 ~~W~w~~~~~~~p~~R~~hs~~~~---~~~lyV~GG~~~~~ 281 (889)
..-+-..+ +....-.+|.+. .+..+|+||+....
T Consensus 196 P~vsC~vl----~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 196 PAVSCTVL----QGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred ceeEEEEC----CCCceEeeeeEeecCCCceEEEecccccc
Confidence 00011111 112222222222 46788999996544
No 78
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.41 E-value=1.6e-06 Score=83.61 Aligned_cols=118 Identities=21% Similarity=0.263 Sum_probs=76.6
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH--HHHHHHHHHhhcCCCcEEEecCCCccch
Q 002713 586 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL--ETITLLLALKIEYPENVHLIRGNHEAAD 663 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~--evl~ll~~lk~~~p~~v~llrGNHE~~~ 663 (889)
+|.+++|+||++. .+ .....+ .+|++||++++|...- +.+.++..++ . ..++++.||||...
T Consensus 1 ~i~~isD~H~~~~----~~---~~~~~D------~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~-~~~~~v~GNHD~~~ 64 (135)
T cd07379 1 RFVCISDTHSRHR----TI---SIPDGD------VLIHAGDLTERGTLEELQKFLDWLKSLP--H-PHKIVIAGNHDLTL 64 (135)
T ss_pred CEEEEeCCCCCCC----cC---cCCCCC------EEEECCCCCCCCCHHHHHHHHHHHHhCC--C-CeEEEEECCCCCcC
Confidence 4789999999987 11 112222 6888999999986532 2344443332 1 23678999999631
Q ss_pred hhhhcCChHHHHHHhCCCCchhhhhhhhhhcCCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhcc
Q 002713 664 INALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDL 743 (889)
Q Consensus 664 ~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dl 743 (889)
. .-+.+++++||.+.... +.
T Consensus 65 ~-------------------------------------~~~~~ilv~H~~p~~~~-----------------------~~ 84 (135)
T cd07379 65 D-------------------------------------PEDTDILVTHGPPYGHL-----------------------DL 84 (135)
T ss_pred C-------------------------------------CCCCEEEEECCCCCcCc-----------------------cc
Confidence 1 01236999999542110 00
Q ss_pred ccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcCCeEEEEeccccccceE
Q 002713 744 LWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 798 (889)
Q Consensus 744 lWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 798 (889)
++ + . ..+|.+.+.+++++.+.+++|-||.-.+.|++
T Consensus 85 ~~--~----------------~-~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 85 VS--S----------------G-QRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred cc--c----------------C-cccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 00 0 0 23577889999999999999999999988876
No 79
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.39 E-value=3.2e-06 Score=88.40 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=55.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccc
Q 002713 586 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 662 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 662 (889)
+|.+++||||++..|.++++...-...+ .+|++||++++|...-++..++..|... +..+++++||||..
T Consensus 6 kIl~iSDiHgn~~~le~l~~~~~~~~~D------~vv~~GDl~~~g~~~~~~~~~l~~l~~l-~~pv~~V~GNhD~~ 75 (224)
T cd07388 6 YVLATSNPKGDLEALEKLVGLAPETGAD------AIVLIGNLLPKAAKSEDYAAFFRILGEA-HLPTFYVPGPQDAP 75 (224)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhhcCCC------EEEECCCCCCCCCCHHHHHHHHHHHHhc-CCceEEEcCCCChH
Confidence 5999999999999999999876432233 7899999999997776777777666432 34699999999975
No 80
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.38 E-value=3.6e-07 Score=71.65 Aligned_cols=46 Identities=30% Similarity=0.647 Sum_probs=30.9
Q ss_pred CccccEEEEECCcEEEEEecCCCC-cccCcEEEEecCCCCceEEEccCC
Q 002713 152 PRYGHVMDLVSQRYLVSVSGNDGK-RVLSDAWALDTAQKPYVWQRLNPE 199 (889)
Q Consensus 152 ~R~~hs~~~~~~~~lyv~GG~~~~-~~lndv~~yd~~t~~~~W~~v~~~ 199 (889)
+|++|+++.+.++.+|||||.+.. ..++++|+||+.++ +|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEECCCC
Confidence 699999999977799999999876 68999999999999 99999543
No 81
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.36 E-value=5.1e-07 Score=70.03 Aligned_cols=46 Identities=33% Similarity=0.499 Sum_probs=39.8
Q ss_pred ccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccCC
Q 002713 258 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (889)
Q Consensus 258 ~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (889)
||+.|++++++++|||+||.... ....+++++||+.+++|+.++.+
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN---NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST---SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc---CceeeeEEEEeCCCCEEEEcCCC
Confidence 68999999999999999998762 22378999999999999998876
No 82
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.34 E-value=4.9e-07 Score=70.91 Aligned_cols=47 Identities=30% Similarity=0.716 Sum_probs=30.3
Q ss_pred ccCccEEEEEC-CEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCC
Q 002713 99 PRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP 150 (889)
Q Consensus 99 ~R~~haa~~~~-~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p 150 (889)
||++|+++.++ ++||||||.+..+..++++|+||+.+++ |+++ +++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~--W~~~---~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNT--WTRL---PSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTE--EEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCE--EEEC---CCCC
Confidence 69999999995 8999999998777899999999999955 9998 5555
No 83
>PF13854 Kelch_5: Kelch motif
Probab=98.33 E-value=9.5e-07 Score=66.86 Aligned_cols=40 Identities=43% Similarity=0.696 Sum_probs=36.3
Q ss_pred CCcccCccEEEEECCEEEEEcCcC-CCCCccCcEEEEEccC
Q 002713 96 PPSPRAAHAAAAVGTMVVFQGGIG-PAGHSTDDLYVLDLTN 135 (889)
Q Consensus 96 ~P~~R~~haa~~~~~~Iyv~GG~~-~~~~~~~dv~~yD~~t 135 (889)
+|.+|++|++++++++||++||.. .....++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 478999999999999999999998 3678899999999976
No 84
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.28 E-value=8e-07 Score=68.93 Aligned_cols=44 Identities=30% Similarity=0.567 Sum_probs=39.4
Q ss_pred ccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEe
Q 002713 99 PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVV 144 (889)
Q Consensus 99 ~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~ 144 (889)
||++|++++++++||++||.......++++++||+.+++ |+.+.
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNT--WEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTE--EEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCE--EEEcC
Confidence 699999999999999999998767899999999999965 99983
No 85
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.28 E-value=6.8e-06 Score=77.35 Aligned_cols=117 Identities=23% Similarity=0.347 Sum_probs=82.7
Q ss_pred EEEecCCCCHHHHHHHH--HHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhh
Q 002713 588 KVFGDLHGQFGDLMRLF--DEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 665 (889)
Q Consensus 588 ~vvGDiHG~~~~l~~il--~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 665 (889)
+++||+|+......... ........+ .+|++||+++.+....+........+......++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~------~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPD------FVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCC------EEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----
Confidence 47999999999888765 222212222 68899999999998887766644444455677999999999
Q ss_pred hhcCChHHHHHHhCCCCchhhhhhhhhhcCCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhcccc
Q 002713 666 ALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLW 745 (889)
Q Consensus 666 ~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllW 745 (889)
|+++|..+.+.......
T Consensus 70 -----------------------------------------i~~~H~~~~~~~~~~~~---------------------- 86 (131)
T cd00838 70 -----------------------------------------ILLTHGPPYDPLDELSP---------------------- 86 (131)
T ss_pred -----------------------------------------EEEeccCCCCCchhhcc----------------------
Confidence 89999988654210000
Q ss_pred CCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcCCeEEEEeccccccceE
Q 002713 746 SDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 798 (889)
Q Consensus 746 sdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 798 (889)
. .......+...+...+.+++|-||.-....+.
T Consensus 87 --~------------------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 87 --D------------------EDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred --c------------------chhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 0 00155778888999999999999998765554
No 86
>PF13854 Kelch_5: Kelch motif
Probab=98.27 E-value=1.7e-06 Score=65.42 Aligned_cols=42 Identities=29% Similarity=0.586 Sum_probs=35.1
Q ss_pred CCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCC
Q 002713 26 APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTR 85 (889)
Q Consensus 26 ~P~pR~ght~~~i~~~~~~~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~ 85 (889)
+|.||.+|+++++ +++||||||...... ...+|+|+||+.++
T Consensus 1 ~P~~R~~hs~~~~------~~~iyi~GG~~~~~~------------~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVV------GNNIYIFGGYSGNNN------------SYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEE------CCEEEEEcCccCCCC------------CEECcEEEEECCCC
Confidence 4899999999999 899999999985111 16899999999763
No 87
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.14 E-value=0.00017 Score=75.33 Aligned_cols=182 Identities=17% Similarity=0.250 Sum_probs=105.0
Q ss_pred CCCCcccceEEEeccccCC-CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCc--------EEEecCCCCC
Q 002713 26 APGPRCGHTLTAVAATKTT-GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRK--------WTRIRPAGEP 96 (889)
Q Consensus 26 ~P~pR~ght~~~i~~~~~~-~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~--------W~~l~~~g~~ 96 (889)
+|..|+ -+.+.+...... ....++-||.+.++. +.+.+|++.+.+.. .+.-.-.|+.
T Consensus 19 LPPLR~-PAv~~~~~~~~~~~~~YlIHGGrTPNNE-------------lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdv 84 (337)
T PF03089_consen 19 LPPLRC-PAVCHLSDPSDGEPEQYLIHGGRTPNNE-------------LSSSLYILSVDSRGCNKKVTLCCQEKELVGDV 84 (337)
T ss_pred CCCCCC-ccEeeecCCCCCCeeeEEecCCcCCCcc-------------cccceEEEEeecCCCCceeEEEEecceecCCC
Confidence 455665 334444222222 233456677776553 67889998776532 3333455889
Q ss_pred CcccCccEEEEEC----CEEEEEcCcC--CCCC-----------ccCcEEEEEccCCceEEEEEeecCCCCCCccccEEE
Q 002713 97 PSPRAAHAAAAVG----TMVVFQGGIG--PAGH-----------STDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMD 159 (889)
Q Consensus 97 P~~R~~haa~~~~----~~Iyv~GG~~--~~~~-----------~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~ 159 (889)
|.+|++|++.++. ..+++|||.+ +.+. +...+|.+|+.-.-.+=+.+ ......-.+|.+.
T Consensus 85 P~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l---pEl~dG~SFHvsl 161 (337)
T PF03089_consen 85 PEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL---PELQDGQSFHVSL 161 (337)
T ss_pred CcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc---hhhcCCeEEEEEE
Confidence 9999999998883 3789999975 2111 22457788887532112222 4556677888887
Q ss_pred EECCcEEEEEecCCC--CcccCcEEEEecCC---CCceEEEccCCCCCCCcccceEEEE--ecCCEEEEEccCCCCCC
Q 002713 160 LVSQRYLVSVSGNDG--KRVLSDAWALDTAQ---KPYVWQRLNPEGDRPSARMYATASA--RSDGMFLLCGGRDASGA 230 (889)
Q Consensus 160 ~~~~~~lyv~GG~~~--~~~lndv~~yd~~t---~~~~W~~v~~~~~~P~~r~~~~a~~--~~~~~l~v~GG~~~~~~ 230 (889)
...| .+|++||..- +..-..++++.++- .| +-.+... +......+|.+ .....++|.||+..+.+
T Consensus 162 ar~D-~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP--~vsC~vl---~~glSisSAIvt~~~~~e~iIlGGY~sdsQ 233 (337)
T PF03089_consen 162 ARND-CVYILGGHSLESDSRPPRLYRLKVDLLLGSP--AVSCTVL---QGGLSISSAIVTQTGPHEYIILGGYQSDSQ 233 (337)
T ss_pred ecCc-eEEEEccEEccCCCCCCcEEEEEEeecCCCc--eeEEEEC---CCCceEeeeeEeecCCCceEEEecccccce
Confidence 7776 8999999743 33445566654332 11 1111111 12222333332 24568899999977653
No 88
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.12 E-value=0.00012 Score=74.22 Aligned_cols=58 Identities=28% Similarity=0.446 Sum_probs=41.9
Q ss_pred CeEEEecCC-CCHH-----HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCC
Q 002713 586 PVKVFGDLH-GQFG-----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 659 (889)
Q Consensus 586 ~i~vvGDiH-G~~~-----~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 659 (889)
.|.||+|+| |.-. .+.++++. ...+ .++.+||+++ .+++.+|..++ ..++.++|||
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~---~~~d------~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~ 62 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVP---GKIQ------HVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDF 62 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhcc---CCCC------EEEECCCCCC-----HHHHHHHHhhC----CceEEEECCC
Confidence 478999999 6543 35666654 1122 7899999987 77777776653 2599999999
Q ss_pred cc
Q 002713 660 EA 661 (889)
Q Consensus 660 E~ 661 (889)
|.
T Consensus 63 D~ 64 (178)
T cd07394 63 DE 64 (178)
T ss_pred Cc
Confidence 97
No 89
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.11 E-value=0.00014 Score=76.57 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=98.0
Q ss_pred EEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCC----CCceEEEccCCCCCC
Q 002713 128 LYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQ----KPYVWQRLNPEGDRP 203 (889)
Q Consensus 128 v~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t----~~~~W~~v~~~~~~P 203 (889)
...||+.+++ ++.+.+ ..--...+.+...++.+++.||.... ...+-.|++.+ . .|.+.... +-
T Consensus 48 s~~yD~~tn~--~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~--~w~e~~~~--m~ 115 (243)
T PF07250_consen 48 SVEYDPNTNT--FRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTC--DWTESPND--MQ 115 (243)
T ss_pred EEEEecCCCc--EEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCC--CceECccc--cc
Confidence 4579999955 777733 33334444456678889999998542 23456677654 3 68877542 45
Q ss_pred CcccceEEEEecCCEEEEEccCCCCCCcccceEEEeccc---CCeeEEEeCCC---CCCCccceeEEEEECCEEEEEcCC
Q 002713 204 SARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHR---NGQWEWTLAPG---VAPSPRYQHAAVFVGARLHVTGGA 277 (889)
Q Consensus 204 ~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~---~~~W~w~~~~~---~~p~~R~~hs~~~~~~~lyV~GG~ 277 (889)
.+|.|.++....||+++|+||... ..+.|.+.. ...+.|..+.. ..+..-|=+....-+++||+++..
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNN------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCC------CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 889999999999999999999862 234444432 12233322221 122333434444459999999873
Q ss_pred CCCCCCccCCCcEEEEECCCCeE-EeccCCcc
Q 002713 278 LRGGRAIEGEAAVAVLDTAAGVW-LDRNGLVT 308 (889)
Q Consensus 278 ~~~~~~~~~~~~v~~yD~~t~~W-~~v~~~~~ 308 (889)
.-.+||..++++ ++++.++.
T Consensus 190 -----------~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 190 -----------GSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred -----------CcEEEeCCCCeEEeeCCCCCC
Confidence 356889999977 78887755
No 90
>smart00612 Kelch Kelch domain.
Probab=97.94 E-value=1.2e-05 Score=61.76 Aligned_cols=47 Identities=32% Similarity=0.600 Sum_probs=38.6
Q ss_pred EEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECC
Q 002713 47 RLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGT 110 (889)
Q Consensus 47 ~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~ 110 (889)
+|||+||..... .++++++||+.+++|+.++ ++|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~--------------~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ--------------RLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc--------------eeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 489999985421 4789999999999999877 4568999999988764
No 91
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.93 E-value=0.00084 Score=70.81 Aligned_cols=161 Identities=13% Similarity=0.183 Sum_probs=98.2
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccC--CceEEEEEeecCCCCCC
Q 002713 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTN--DKFKWHRVVVQGQGPGP 152 (889)
Q Consensus 75 ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t--~~~~W~~v~~~g~~p~~ 152 (889)
..-..||+.+++++.+....+ .-.++|+ ..-++.+++.||... -...+-.|++.+ ....|.+.. ..+..+
T Consensus 46 a~s~~yD~~tn~~rpl~v~td--~FCSgg~-~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~--~~m~~~ 117 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTD--TFCSGGA-FLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESP--NDMQSG 117 (243)
T ss_pred EEEEEEecCCCcEEeccCCCC--CcccCcC-CCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECc--ccccCC
Confidence 345679999999998875432 2233333 223578999999754 334566777764 123487763 348999
Q ss_pred ccccEEEEECCcEEEEEecCCCCcccCcEEEEecC----CCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCC
Q 002713 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTA----QKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS 228 (889)
Q Consensus 153 R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~----t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~ 228 (889)
|.+.++..+.++.++|+||... ..+.|-+. ...+.|..+......-..-.|-.+.+..+|+|++++..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--- 189 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--- 189 (243)
T ss_pred CccccceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---
Confidence 9999999999999999999873 22333332 12234433332211112233556677889999999974
Q ss_pred CCcccceEEEecccCCeeEE-EeCCCCCCCcc
Q 002713 229 GAPLADAYGLLMHRNGQWEW-TLAPGVAPSPR 259 (889)
Q Consensus 229 ~~~~~dv~~l~~~~~~~W~w-~~~~~~~p~~R 259 (889)
+...||...+ ++ ...+..+-.+|
T Consensus 190 -----~s~i~d~~~n---~v~~~lP~lPg~~R 213 (243)
T PF07250_consen 190 -----GSIIYDYKTN---TVVRTLPDLPGGPR 213 (243)
T ss_pred -----CcEEEeCCCC---eEEeeCCCCCCCce
Confidence 2345566655 44 34444432334
No 92
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.76 E-value=0.00025 Score=67.86 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=39.5
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCc
Q 002713 588 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 660 (889)
Q Consensus 588 ~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 660 (889)
.|++|.||..+.+.++.... ...+ .++++||+. .+++.++..++ ...++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~~--~~~d------~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVRL--EGVD------LILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD 56 (129)
T ss_pred CeeccccCccccchHHHhhC--CCCC------EEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc
Confidence 38999999988777766652 2222 799999984 34555655542 234899999999
No 93
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.71 E-value=6.4e-05 Score=76.36 Aligned_cols=65 Identities=23% Similarity=0.307 Sum_probs=44.3
Q ss_pred eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-HHHHHHHHHHhhcCCCcEEEecCCCccch
Q 002713 587 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-LETITLLLALKIEYPENVHLIRGNHEAAD 663 (889)
Q Consensus 587 i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s-~evl~ll~~lk~~~p~~v~llrGNHE~~~ 663 (889)
|.+++||||++..+.. ........+ -+|+.||++++|... .+.+..|.. .+..++.+.||||...
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D------~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEAD------AVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNCDTPE 66 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCC------EEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCCCCHH
Confidence 5789999999998876 222212222 688999999999763 333333322 3455999999999754
No 94
>smart00612 Kelch Kelch domain.
Probab=97.68 E-value=6.8e-05 Score=57.55 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=38.0
Q ss_pred EEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEe
Q 002713 165 YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASAR 214 (889)
Q Consensus 165 ~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~ 214 (889)
+||++||.++...++++++||+.++ +|+.++++ |.+|..|+++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~---~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETN--KWTPLPSM---PTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCC--eEccCCCC---CCccccceEEEe
Confidence 3899999987777999999999999 99998765 788888877654
No 95
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.63 E-value=1.1e-05 Score=90.24 Aligned_cols=243 Identities=11% Similarity=-0.000 Sum_probs=162.4
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceEeecC----CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCC
Q 002713 557 FLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ 632 (889)
Q Consensus 557 ~~~~~~~~~l~~~~~~~~~~e~~~l~~~~----~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~ 632 (889)
.|...++..+++.+.+++..+|+...+.+ -.+.++|.||.+.|+.+.++.- |.-. .-|++-|++++++.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~-----K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYI-----KAYVRRGTAVMALG 86 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhh-----heeeeccHHHHhHH
Confidence 56778899999999999999998887643 4889999999999999988764 2211 15999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhcCCCceEEEEcCeEEEecC
Q 002713 633 HSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHG 712 (889)
Q Consensus 633 ~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~i~~vHg 712 (889)
...+.+..|...+...|+...+.|++||+..+-..++|..+....+++. +..++..+...+-.+ +++.+.+.++=-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~-~s~~~~~~~~~~~~~-i~~~y~g~~le~~- 163 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDK-KSVVEMKIDEEDMDL-IESDYSGPVLEDH- 163 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCC-ccccccccccccccc-cccccCCcccccc-
Confidence 9999999999999999999999999999999999999998887777554 223333333332221 5555554333222
Q ss_pred CCCC--------------CCc-----C-HHHh----hcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCceEE
Q 002713 713 GIGR--------------SIH-----S-VEQI----EKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVT 768 (889)
Q Consensus 713 Gi~~--------------~~~-----~-~~~i----~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~ 768 (889)
-+.- .+. + +++. +.+..++++. .-.|..|+++... -..|-...|+.+ ..
T Consensus 164 kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~----~~~d~~~sv~gd~--hGqfydl~nif~-l~ 236 (476)
T KOG0376|consen 164 KVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEIS----VPGDVKISVCGDT--HGQFYDLLNIFE-LN 236 (476)
T ss_pred hhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEee----cCCCceEEecCCc--cccccchhhhHh-hc
Confidence 1100 000 0 0111 1111122211 3456788888642 222333455555 34
Q ss_pred eCHHHHHHHHHhcCCeEEEEecccc-----------cc-ceEEec---CCeEEEEecccccCC
Q 002713 769 FGPDRVSDFCKRNKLQLIIRAHECV-----------MD-GFERFA---QGQLITLFSATNYCG 816 (889)
Q Consensus 769 fg~~~~~~fl~~~~l~~iiR~H~~~-----------~~-G~~~~~---~~~~itvfSa~~y~~ 816 (889)
.+++....||.+.++.-+++.|.-+ ++ +|.... .+.++++|+++.+|-
T Consensus 237 g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~ 299 (476)
T KOG0376|consen 237 GLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK 299 (476)
T ss_pred CCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence 5777778888888888888888654 12 222111 235899999998874
No 96
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.62 E-value=0.0002 Score=76.33 Aligned_cols=206 Identities=18% Similarity=0.238 Sum_probs=102.9
Q ss_pred CeEEEecCCCCH------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCC--C-----CChHHHHHHHHHHhhcCCCcE
Q 002713 586 PVKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDR--G-----QHSLETITLLLALKIEYPENV 652 (889)
Q Consensus 586 ~i~vvGDiHG~~------~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDR--G-----~~s~evl~ll~~lk~~~p~~v 652 (889)
++++++|+|... ..|+++|+..... .+ .++++||++|. | +...+++.+|..|+.. +-.+
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~-~d------~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v 73 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEARQ-AD------ALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPC 73 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhhcc-CC------EEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeE
Confidence 689999999542 3455555432211 12 68899999985 2 3346777777777643 2469
Q ss_pred EEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhcCCCceEEEEc-CeEEEecCCCCCCCcCH-HHhhcccC-
Q 002713 653 HLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSIHSV-EQIEKLER- 729 (889)
Q Consensus 653 ~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~-~~i~~vHgGi~~~~~~~-~~i~~~~r- 729 (889)
++++||||..... ...+..+ . .++.. |....++ .+++++||-.-+..... ...+++-|
T Consensus 74 ~~v~GNHD~~~~~-------~~~~~~g----~-------~~l~~-~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~ 134 (241)
T PRK05340 74 YFMHGNRDFLLGK-------RFAKAAG----M-------TLLPD-PSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRN 134 (241)
T ss_pred EEEeCCCchhhhH-------HHHHhCC----C-------EEeCC-cEEEEECCEEEEEECCcccccCCHHHHHHHHHHhC
Confidence 9999999974321 1111111 1 11211 2333344 47999999876532111 11222211
Q ss_pred CcccCCCCchhhccccCCCCCC-CC-CCCcc-----cCC-CCCceEEeCHHHHHHHHHhcCCeEEEEeccccccceEEec
Q 002713 730 PITMDAGSIILMDLLWSDPTEN-DS-IEGLR-----PNA-RGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFA 801 (889)
Q Consensus 730 p~~~~~~~~~~~dllWsdP~~~-~~-~~~~~-----~n~-rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~ 801 (889)
|.- ..-++. -|... -. ...+. .+. +..-.....++.+.+.+++.+.+++|-||.-.+.=.....
T Consensus 135 ~~~-------~~~~~~-~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~ 206 (241)
T PRK05340 135 PWL-------QWLFLA-LPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQA 206 (241)
T ss_pred HHH-------HHHHHh-CCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceeeccC
Confidence 110 000000 01000 00 00000 001 1111233567888899999999999999997644333322
Q ss_pred CCeEEEEecccccCCCCCCeEEEEEEcCC
Q 002713 802 QGQLITLFSATNYCGTANNAGAILVVGRG 830 (889)
Q Consensus 802 ~~~~itvfSa~~y~~~~~n~ga~l~~~~~ 830 (889)
++.-++-.+-.+. ...+.++.++.+
T Consensus 207 ~~~~~~~~~lgdw----~~~~~~~~~~~~ 231 (241)
T PRK05340 207 GGQPATRIVLGDW----HEQGSVLKVDAD 231 (241)
T ss_pred CCcceEEEEeCCC----CCCCeEEEEECC
Confidence 3311222222222 223677777765
No 97
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.62 E-value=0.00028 Score=74.66 Aligned_cols=206 Identities=15% Similarity=0.192 Sum_probs=101.0
Q ss_pred eEEEecCCCCH------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC--C---C--hHHHHHHHHHHhhcCCCcEE
Q 002713 587 VKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG--Q---H--SLETITLLLALKIEYPENVH 653 (889)
Q Consensus 587 i~vvGDiHG~~------~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG--~---~--s~evl~ll~~lk~~~p~~v~ 653 (889)
+++++|+|... ..|++.+...... .+ .++++||++|.. . . ..++..+|..|+.. +..++
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~~-~d------~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~ 72 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEARK-AD------ALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCY 72 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhcc-CC------EEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEE
Confidence 36899999542 2455555443221 22 688999999952 1 1 23556666666543 45699
Q ss_pred EecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhcCCCceEEEE-cCeEEEecCCCCCCCc-CHHHhhcc-cCC
Q 002713 654 LIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRSIH-SVEQIEKL-ERP 730 (889)
Q Consensus 654 llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i-~~~i~~vHgGi~~~~~-~~~~i~~~-~rp 730 (889)
++.||||...-. ...+.. +. .++.. +....+ +.+++++||-.-..-. ...-.+++ ..|
T Consensus 73 ~v~GNHD~~~~~-------~~~~~~----gi-------~~l~~-~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~ 133 (231)
T TIGR01854 73 FMHGNRDFLIGK-------RFAREA----GM-------TLLPD-PSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQP 133 (231)
T ss_pred EEcCCCchhhhH-------HHHHHC----CC-------EEECC-CEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCH
Confidence 999999974211 001111 11 12222 222233 4689999997643111 11111221 112
Q ss_pred cc------cCC-CCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcCCeEEEEeccccccceEEecCC
Q 002713 731 IT------MDA-GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQG 803 (889)
Q Consensus 731 ~~------~~~-~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~ 803 (889)
.. ++. ....+...+++..... .. .+..-.....++.+++++++.+.+++|-||.-.+.=+.+..++
T Consensus 134 ~~~~~~~~l~~~~r~~l~~~~~~~s~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~ 206 (231)
T TIGR01854 134 WLQRLFLHLPLAVRVKLARKIRAESRAD---KQ----MKSQDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADG 206 (231)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHh---cC----CCcchhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCC
Confidence 10 000 0011223333322110 00 0001123356788999999999999999999765434333333
Q ss_pred eEEEEecccccCCCCCCeEEEEEEcCC
Q 002713 804 QLITLFSATNYCGTANNAGAILVVGRG 830 (889)
Q Consensus 804 ~~itvfSa~~y~~~~~n~ga~l~~~~~ 830 (889)
.-++-..-.+.. ..+.+++++++
T Consensus 207 ~~~~~~~lgdW~----~~~~~~~~~~~ 229 (231)
T TIGR01854 207 QPATRIVLGDWY----RQGSILRVDAD 229 (231)
T ss_pred CccEEEEECCCc----cCCeEEEEcCC
Confidence 222333333332 22455666543
No 98
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.62 E-value=0.0032 Score=65.86 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=40.5
Q ss_pred eCHHHHHHHHHhc-CCeEEEEeccccccceEEe-----cCCeEEEEecccccCCCCCCe-EEEEEEcCC-ceEEeEEecc
Q 002713 769 FGPDRVSDFCKRN-KLQLIIRAHECVMDGFERF-----AQGQLITLFSATNYCGTANNA-GAILVVGRG-LVVVPKLIHP 840 (889)
Q Consensus 769 fg~~~~~~fl~~~-~l~~iiR~H~~~~~G~~~~-----~~~~~itvfSa~~y~~~~~n~-ga~l~~~~~-~~~~~~~~~~ 840 (889)
.+...+.+.++++ ++++++-||.-. .+.... .++.+..+++....-...+|. =.++.++++ .+|.++.+.|
T Consensus 135 ~~~~~~~~ll~~~~~V~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~i~~~tysp 213 (214)
T cd07399 135 DGQQIWDKLVKKNDNVFMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDNNKIDVRTYSP 213 (214)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCC-CceEEEcccCCCCCEeeEEeecccCCCCCCcceEEEEEEecCCCEEEEEeCCC
Confidence 3566788899988 899999999654 344333 134455554432111111221 145555555 4777776655
No 99
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.55 E-value=0.0013 Score=63.86 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=23.9
Q ss_pred CHHHHHHHHHhcCCeEEEEeccccccceE
Q 002713 770 GPDRVSDFCKRNKLQLIIRAHECVMDGFE 798 (889)
Q Consensus 770 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 798 (889)
+.+.+.+++++.++++++-||.-....+.
T Consensus 101 ~~~~~~~~l~~~~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 101 DAGDALKLLAEAGVDLVLHGHKHVPYVGN 129 (144)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCcCeee
Confidence 55778899999999999999998755444
No 100
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.51 E-value=0.057 Score=61.88 Aligned_cols=198 Identities=18% Similarity=0.219 Sum_probs=109.4
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCC--cEEEecCCCC-----CCcccCccEEEEECCEEEEEcC
Q 002713 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTR--KWTRIRPAGE-----PPSPRAAHAAAAVGTMVVFQGG 117 (889)
Q Consensus 45 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~--~W~~l~~~g~-----~P~~R~~haa~~~~~~Iyv~GG 117 (889)
+++||+.+. ...+++||..+. .|+.-..... .+.++...+.++.+++||+.+.
T Consensus 69 ~~~vy~~~~--------------------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~ 128 (394)
T PRK11138 69 YNKVYAADR--------------------AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE 128 (394)
T ss_pred CCEEEEECC--------------------CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC
Confidence 788888654 246899998865 5875322100 0012333345667888887643
Q ss_pred cCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEcc
Q 002713 118 IGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLN 197 (889)
Q Consensus 118 ~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~ 197 (889)
. ..++++|..+.+..|+.-.. + . . .+.-++.++.+|+..+ + +.++.||.++....|+.-.
T Consensus 129 ~-------g~l~ald~~tG~~~W~~~~~-~----~-~-~ssP~v~~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 129 K-------GQVYALNAEDGEVAWQTKVA-G----E-A-LSRPVVSDGLVLVHTS-N-----GMLQALNESDGAVKWTVNL 188 (394)
T ss_pred C-------CEEEEEECCCCCCcccccCC-C----c-e-ecCCEEECCEEEEECC-C-----CEEEEEEccCCCEeeeecC
Confidence 2 35999999998888976421 1 1 1 1222333457776432 2 3689999999888898754
Q ss_pred CCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCC----cc---ceeEEEEECCE
Q 002713 198 PEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPS----PR---YQHAAVFVGAR 270 (889)
Q Consensus 198 ~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~----~R---~~hs~~~~~~~ 270 (889)
.... ...+.. ++-++.++.+|+..+ ...++.++.. +|+-.|......+.. .| ...+-++.++.
T Consensus 189 ~~~~-~~~~~~-~sP~v~~~~v~~~~~-------~g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 189 DVPS-LTLRGE-SAPATAFGGAIVGGD-------NGRVSAVLME-QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred CCCc-ccccCC-CCCEEECCEEEEEcC-------CCEEEEEEcc-CChhhheeccccCCCccchhcccccCCCcEEECCE
Confidence 2100 011111 222334566666432 1236677665 344445432221110 01 11234456899
Q ss_pred EEEEcCCCCCCCCccCCCcEEEEECCCCe--EEe
Q 002713 271 LHVTGGALRGGRAIEGEAAVAVLDTAAGV--WLD 302 (889)
Q Consensus 271 lyV~GG~~~~~~~~~~~~~v~~yD~~t~~--W~~ 302 (889)
+|+.+. ...++.+|+.+.+ |+.
T Consensus 259 vy~~~~----------~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 259 VYALAY----------NGNLVALDLRSGQIVWKR 282 (394)
T ss_pred EEEEEc----------CCeEEEEECCCCCEEEee
Confidence 998653 1358999998864 875
No 101
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.49 E-value=9.3e-05 Score=73.98 Aligned_cols=67 Identities=27% Similarity=0.231 Sum_probs=45.4
Q ss_pred eEEEecCCCCHHHHHHHHHH-hCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccc
Q 002713 587 VKVFGDLHGQFGDLMRLFDE-YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 662 (889)
Q Consensus 587 i~vvGDiHG~~~~l~~il~~-~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 662 (889)
+.+++|||+....+...+.. ......+ -++++||+++++.....+. ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d------~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDAD------ILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCC------EEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 46899999998777665421 1212222 6888999999987765544 2222 23345799999999985
No 102
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.43 E-value=0.00031 Score=76.24 Aligned_cols=70 Identities=20% Similarity=0.091 Sum_probs=49.6
Q ss_pred CCeEEEecCCCC----HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC--CChHHHHHHHHHHhhcCCCcEEEecCC
Q 002713 585 APVKVFGDLHGQ----FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG--QHSLETITLLLALKIEYPENVHLIRGN 658 (889)
Q Consensus 585 ~~i~vvGDiHG~----~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG--~~s~evl~ll~~lk~~~p~~v~llrGN 658 (889)
-+|.+++|||.. ...+.++++...-...+ -++++|||+|++ ...-++..+|..|+...| ++.+.||
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pD------lVli~GD~~d~~~~~~~~~~~~~L~~L~~~~p--v~~V~GN 121 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQKPD------LILLGGDYVLFDMPLNFSAFSDVLSPLAECAP--TFACFGN 121 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCC------EEEEccCcCCCCccccHHHHHHHHHHHhhcCC--EEEecCC
Confidence 359999999976 45577777665433333 688899999954 233456667777765544 9999999
Q ss_pred Cccc
Q 002713 659 HEAA 662 (889)
Q Consensus 659 HE~~ 662 (889)
||..
T Consensus 122 HD~~ 125 (271)
T PRK11340 122 HDRP 125 (271)
T ss_pred CCcc
Confidence 9973
No 103
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.39 E-value=0.00026 Score=74.28 Aligned_cols=69 Identities=29% Similarity=0.298 Sum_probs=48.8
Q ss_pred CeEEEecCCCCHH----HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH-HHHHHHHHHhhcCCCcEEEecCCCc
Q 002713 586 PVKVFGDLHGQFG----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-ETITLLLALKIEYPENVHLIRGNHE 660 (889)
Q Consensus 586 ~i~vvGDiHG~~~----~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~-evl~ll~~lk~~~p~~v~llrGNHE 660 (889)
++.+++|+|.... .+.++++...-...+ -+|++||++|.+.... ++..++..++. +..++++.||||
T Consensus 3 ~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d------~vl~~GD~~~~~~~~~~~~~~~l~~l~~--~~~v~~v~GNHD 74 (223)
T cd07385 3 RIAHLSDLHLGPFVSRERLERLVEKINALKPD------LVVLTGDLVDGSVDVLELLLELLKKLKA--PLGVYAVLGNHD 74 (223)
T ss_pred EEEEEeecCCCccCCHHHHHHHHHHHhccCCC------EEEEcCcccCCcchhhHHHHHHHhccCC--CCCEEEECCCcc
Confidence 5899999998743 566666655432222 6888999999988765 55555554432 345999999999
Q ss_pred cc
Q 002713 661 AA 662 (889)
Q Consensus 661 ~~ 662 (889)
..
T Consensus 75 ~~ 76 (223)
T cd07385 75 YY 76 (223)
T ss_pred cc
Confidence 84
No 104
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.34 E-value=0.0083 Score=60.16 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=43.7
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccch
Q 002713 585 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 663 (889)
Q Consensus 585 ~~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 663 (889)
..|.|++|.||...+..+..+.......+ -+|.+||++...... +|......+++.++||.|...
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d------~vih~GD~~~~~~~~--------~l~~~~~~~i~~V~GN~D~~~ 66 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVD------AVIHAGDSTSPFTLD--------ALEGGLAAKLIAVRGNCDGEV 66 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCC------EEEECCCcCCccchH--------HhhcccccceEEEEccCCCcc
Confidence 35899999999997655555554443333 688899999765421 111102368999999999843
No 105
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.19 E-value=0.049 Score=57.45 Aligned_cols=203 Identities=8% Similarity=0.056 Sum_probs=106.6
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCcc-EEEEEC----C-EEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCC
Q 002713 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAH-AAAAVG----T-MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQ 148 (889)
Q Consensus 75 ndv~~yD~~t~~W~~l~~~g~~P~~R~~h-aa~~~~----~-~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~ 148 (889)
..++++||.|++|..++.....+.....+ .+..++ . +|+.+.... .......+++|++.++. |+.+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~~~~~--Wr~~~~--~ 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTLGSNS--WRTIEC--S 88 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEeCCCC--cccccc--C
Confidence 46899999999999997432110001111 111122 1 666665431 11234578899999865 999842 1
Q ss_pred CCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEE-ccCCCCCCCccc---ceEEEEecCCEEEEEcc
Q 002713 149 GPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQR-LNPEGDRPSARM---YATASARSDGMFLLCGG 224 (889)
Q Consensus 149 ~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~-v~~~~~~P~~r~---~~~a~~~~~~~l~v~GG 224 (889)
.+........+.+++ .+|-+...........+..||+.+. +|.. ++. |..+. .....+..+|+|.+...
T Consensus 89 ~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~IvsFDl~~E--~f~~~i~~----P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 89 PPHHPLKSRGVCING-VLYYLAYTLKTNPDYFIVSFDVSSE--RFKEFIPL----PCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred CCCccccCCeEEECC-EEEEEEEECCCCCcEEEEEEEcccc--eEeeeeec----CccccccccceEEEEECCEEEEEEe
Confidence 221112222444454 6665554322111126889999999 7884 432 22111 12334445688888765
Q ss_pred CCCCCCcccceEEEecccCCeeEEEeCCCCCCCccce----eEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCC
Q 002713 225 RDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQ----HAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG 298 (889)
Q Consensus 225 ~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~----hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~ 298 (889)
.... ..-++|.++......|+..-.-...+.++.. ...+..+++|++.-.. .. ..-+.+||+.++
T Consensus 162 ~~~~--~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~------~~~~~~y~~~~~ 230 (230)
T TIGR01640 162 KKDT--NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-EN------PFYIFYYNVGEN 230 (230)
T ss_pred cCCC--CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CC------ceEEEEEeccCC
Confidence 4221 1258999876545556643222221222221 2334457888877542 10 113889998764
No 106
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.09 E-value=0.16 Score=58.15 Aligned_cols=184 Identities=17% Similarity=0.214 Sum_probs=102.0
Q ss_pred CCcEEEEECCCC--cEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCC
Q 002713 74 TNSVHLYDVLTR--KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (889)
Q Consensus 74 ~ndv~~yD~~t~--~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~ 151 (889)
.+.++.+|..+. .|+.-.. + + ...+-++.++.||+..+. ..++.||..+.+..|+.-.. .+...
T Consensus 129 ~g~l~ald~~tG~~~W~~~~~-~----~-~~ssP~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~-~~~~~ 194 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKVA-G----E-ALSRPVVSDGLVLVHTSN-------GMLQALNESDGAVKWTVNLD-VPSLT 194 (394)
T ss_pred CCEEEEEECCCCCCcccccCC-C----c-eecCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeecCC-CCccc
Confidence 346999999875 5875321 1 1 122234567888876542 35999999998888987521 11111
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCC--CCCCCccc--ceEEEEecCCEEEEEccCCC
Q 002713 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPE--GDRPSARM--YATASARSDGMFLLCGGRDA 227 (889)
Q Consensus 152 ~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~--~~~P~~r~--~~~a~~~~~~~l~v~GG~~~ 227 (889)
.+...+-++.. +.+|+. ..+ ..++.+|..+....|+.-... +.....|. ..+.-++.++.+|+.+.
T Consensus 195 ~~~~~sP~v~~-~~v~~~-~~~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~--- 264 (394)
T PRK11138 195 LRGESAPATAF-GGAIVG-GDN-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY--- 264 (394)
T ss_pred ccCCCCCEEEC-CEEEEE-cCC-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc---
Confidence 12222333333 456653 332 357889998877678753211 00000010 11222345778887552
Q ss_pred CCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCC--eEEe
Q 002713 228 SGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLD 302 (889)
Q Consensus 228 ~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~--~W~~ 302 (889)
-..+++++..+ |+=.|....+. . ...+..+++||+... ...++.+|+++. .|+.
T Consensus 265 ----~g~l~ald~~t-G~~~W~~~~~~---~---~~~~~~~~~vy~~~~----------~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 265 ----NGNLVALDLRS-GQIVWKREYGS---V---NDFAVDGGRIYLVDQ----------NDRVYALDTRGGVELWSQ 320 (394)
T ss_pred ----CCeEEEEECCC-CCEEEeecCCC---c---cCcEEECCEEEEEcC----------CCeEEEEECCCCcEEEcc
Confidence 12478888764 34345443221 1 124567899999753 245999999876 4764
No 107
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.08 E-value=0.0021 Score=64.44 Aligned_cols=40 Identities=35% Similarity=0.525 Sum_probs=29.6
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchh
Q 002713 620 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 664 (889)
Q Consensus 620 ~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 664 (889)
.+|++||++++|..... +.+|.++ +..+++++||||....
T Consensus 45 ~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 45 TVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE 84 (168)
T ss_pred EEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence 79999999999986644 4444333 3569999999997543
No 108
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.06 E-value=0.0013 Score=70.10 Aligned_cols=68 Identities=25% Similarity=0.190 Sum_probs=46.0
Q ss_pred CeEEEecCCCCH------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCC
Q 002713 586 PVKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 659 (889)
Q Consensus 586 ~i~vvGDiHG~~------~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 659 (889)
+|.+++|+|..+ ..|.++++.+.-...+ -+|+.||++++.+...+++..|..+ .+..++++.|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d------~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKID------HLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCC------EEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCC
Confidence 478999999763 2244555554322222 6889999999876666655555443 334699999999
Q ss_pred ccc
Q 002713 660 EAA 662 (889)
Q Consensus 660 E~~ 662 (889)
|..
T Consensus 72 D~~ 74 (239)
T TIGR03729 72 DML 74 (239)
T ss_pred CCC
Confidence 974
No 109
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.98 E-value=0.003 Score=74.39 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=60.9
Q ss_pred CCeEEEecCC-CCH----HHHHHHHHHhC-CCCCCC--CcceeeEEEeccccCC-CCCh---------------HHHHHH
Q 002713 585 APVKVFGDLH-GQF----GDLMRLFDEYG-FPSTAG--DITYIDYLFLGDYVDR-GQHS---------------LETITL 640 (889)
Q Consensus 585 ~~i~vvGDiH-G~~----~~l~~il~~~g-~~~~~~--~~~~~~~vfLGD~vDR-G~~s---------------~evl~l 640 (889)
..+++++||| |.- ..+.++++.+. ..+... .-.-..+|++||+||. |.+. -++..+
T Consensus 244 ~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~ 323 (504)
T PRK04036 244 VYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEY 323 (504)
T ss_pred cEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHH
Confidence 5699999999 652 23444444332 211100 0001168999999994 3211 134445
Q ss_pred HHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHH-hCCCCchhhhhhhhhhcCCCceEEEEcC-eEEEecCCC
Q 002713 641 LLALKIEYPENVHLIRGNHEAADINALFGFRLECIER-MGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGI 714 (889)
Q Consensus 641 l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~-~~~~~~~~~~~~~~~~f~~LPlaa~i~~-~i~~vHgGi 714 (889)
|..|.. .-.|++++||||.........-..+++.. +.. .-..++.. |....+++ +++++||-.
T Consensus 324 L~~L~~--~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~--------~~v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 324 LKQIPE--DIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPE--------HNVTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHhhhc--CCeEEEecCCCcchhhccCCCCccHHHHHhcCc--------CCeEEecC-CeEEEECCEEEEEECCCC
Confidence 555432 23599999999975533221111222222 211 01233333 65445554 789999954
No 110
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.88 E-value=0.0021 Score=69.05 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=44.4
Q ss_pred eEEEecCCCCHHHHHHHHHHhC---CCCCCCCcceeeEEEeccccCCCC-ChHHHHH------HHH---HH---hhcCCC
Q 002713 587 VKVFGDLHGQFGDLMRLFDEYG---FPSTAGDITYIDYLFLGDYVDRGQ-HSLETIT------LLL---AL---KIEYPE 650 (889)
Q Consensus 587 i~vvGDiHG~~~~l~~il~~~g---~~~~~~~~~~~~~vfLGD~vDRG~-~s~evl~------ll~---~l---k~~~p~ 650 (889)
|+|+||+||+++.+.+.++... ..+.+ -+|++||+-..+. ..++.+. -+. ++ ..+.|-
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D------~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~ 74 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVD------LLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPI 74 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCc------EEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCe
Confidence 6899999999998877554432 22222 5888999975443 3444332 111 11 233566
Q ss_pred cEEEecCCCccc
Q 002713 651 NVHLIRGNHEAA 662 (889)
Q Consensus 651 ~v~llrGNHE~~ 662 (889)
-+++|-||||..
T Consensus 75 ~t~fi~GNHE~~ 86 (262)
T cd00844 75 LTIFIGGNHEAS 86 (262)
T ss_pred eEEEECCCCCCH
Confidence 689999999974
No 111
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.88 E-value=0.74 Score=48.16 Aligned_cols=185 Identities=19% Similarity=0.222 Sum_probs=104.9
Q ss_pred CCcEEEEECCCC--cEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCC
Q 002713 74 TNSVHLYDVLTR--KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (889)
Q Consensus 74 ~ndv~~yD~~t~--~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~ 151 (889)
.+.+++||..+. .|+.-.. .+.....+..++.||+..+. +.++.+|..+.+..|+......+...
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~------~~~~~~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLP------GPISGAPVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECS------SCGGSGEEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred CCEEEEEECCCCCEEEEeecc------ccccceeeecccccccccce-------eeeEecccCCcceeeeeccccccccc
Confidence 467999999876 4775431 12222246778898888632 26999999998889994322121111
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCc----ccceEEEEecCCEEEEEccCCC
Q 002713 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSA----RMYATASARSDGMFLLCGGRDA 227 (889)
Q Consensus 152 ~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~----r~~~~a~~~~~~~l~v~GG~~~ 227 (889)
.+......+. ++.+|+... -..++.+|++++...|..-........+ -......++.++.+|++.+..
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g- 183 (238)
T PF13360_consen 112 VRSSSSPAVD-GDRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG- 183 (238)
T ss_dssp TB--SEEEEE-TTEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-
T ss_pred cccccCceEe-cCEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-
Confidence 2333334333 446665543 3478999999987788875432110000 001233445567888877532
Q ss_pred CCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCe--EE
Q 002713 228 SGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--WL 301 (889)
Q Consensus 228 ~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~--W~ 301 (889)
.+..++..+ +.-.|...... ........++.||+.. . ...++++|..|++ |+
T Consensus 184 ------~~~~~d~~t-g~~~w~~~~~~-----~~~~~~~~~~~l~~~~-~---------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 184 ------RVVAVDLAT-GEKLWSKPISG-----IYSLPSVDGGTLYVTS-S---------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ------SEEEEETTT-TEEEEEECSS------ECECEECCCTEEEEEE-T---------TTEEEEEETTTTEEEEE
T ss_pred ------eEEEEECCC-CCEEEEecCCC-----ccCCceeeCCEEEEEe-C---------CCEEEEEECCCCCEEeE
Confidence 157775554 45446333111 1112344578888876 2 2469999999875 65
No 112
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=96.86 E-value=0.058 Score=58.13 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEE-EEEEcCC
Q 002713 771 PDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGA-ILVVGRG 830 (889)
Q Consensus 771 ~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga-~l~~~~~ 830 (889)
.+.+.+.|++.++++++-||.-....... ++--.-+-.++.++-..++.|. ++.++++
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 253 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGRY--GGLEMVVTSAIGAQLGNDKSGLRIVKVTED 253 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceEE--CCEEEEEcCceecccCCCCCCcEEEEECCC
Confidence 45677888999999999999987655432 3321112233333333334443 5566544
No 113
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=96.86 E-value=0.0021 Score=67.17 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=46.0
Q ss_pred CeEEEecCC-CCH--------------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcC--
Q 002713 586 PVKVFGDLH-GQF--------------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEY-- 648 (889)
Q Consensus 586 ~i~vvGDiH-G~~--------------~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~-- 648 (889)
+++.++|+| |.. ..|.++++.......+ .+|+.||++|....+.+.+..+...-.+.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 74 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVD------FVLIAGDLFDSNNPSPEALELLIEALRRLKE 74 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCC------EEEECCcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999 322 2355555554332222 68999999998876555444443332222
Q ss_pred -CCcEEEecCCCccchh
Q 002713 649 -PENVHLIRGNHEAADI 664 (889)
Q Consensus 649 -p~~v~llrGNHE~~~~ 664 (889)
.-.++++.||||....
T Consensus 75 ~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 75 AGIPVFIIAGNHDSPSR 91 (223)
T ss_pred CCCCEEEecCCCCCccc
Confidence 3469999999997654
No 114
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.85 E-value=0.78 Score=47.98 Aligned_cols=183 Identities=19% Similarity=0.267 Sum_probs=103.5
Q ss_pred CcEEEEECCCC--cEEEecCCCCCCcccCccE--EEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCC
Q 002713 75 NSVHLYDVLTR--KWTRIRPAGEPPSPRAAHA--AAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP 150 (889)
Q Consensus 75 ndv~~yD~~t~--~W~~l~~~g~~P~~R~~ha--a~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p 150 (889)
+.+.++|+.+. .|+.-. + ....+.. .+..++.+|+..+ ...++++|..+.+..|+.-.
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~---~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~------ 64 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--G---PGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL------ 64 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--S---SSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC------
T ss_pred CEEEEEECCCCCEEEEEEC--C---CCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec------
Confidence 46788998775 487522 1 1122222 3346888888843 35699999999888898762
Q ss_pred CCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEE-EccCCCCCCCcccceEEEEecCCEEEEEccCCCCC
Q 002713 151 GPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQ-RLNPEGDRPSARMYATASARSDGMFLLCGGRDASG 229 (889)
Q Consensus 151 ~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~-~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~ 229 (889)
..+..... ...++.+|+.... +.++.+|..+....|+ ....... ..........+.++.+|+...
T Consensus 65 ~~~~~~~~-~~~~~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----- 130 (238)
T PF13360_consen 65 PGPISGAP-VVDGGRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPP--AGVRSSSSPAVDGDRLYVGTS----- 130 (238)
T ss_dssp SSCGGSGE-EEETTEEEEEETT------SEEEEEETTTSCEEEEEEE-SSCT--CSTB--SEEEEETTEEEEEET-----
T ss_pred ccccccee-eecccccccccce------eeeEecccCCcceeeeeccccccc--cccccccCceEecCEEEEEec-----
Confidence 11111223 4444477766521 2789999999888999 4543211 222223333444666666553
Q ss_pred CcccceEEEecccCCeeEEEeCCCCCCC-c------cceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCe--E
Q 002713 230 APLADAYGLLMHRNGQWEWTLAPGVAPS-P------RYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--W 300 (889)
Q Consensus 230 ~~~~dv~~l~~~~~~~W~w~~~~~~~p~-~------R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~--W 300 (889)
...++.++..+ |+=.|.......+. . ......++.++.+|+..+.. .+..+|..+.+ |
T Consensus 131 --~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g----------~~~~~d~~tg~~~w 197 (238)
T PF13360_consen 131 --SGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG----------RVVAVDLATGEKLW 197 (238)
T ss_dssp --CSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS----------SEEEEETTTTEEEE
T ss_pred --cCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC----------eEEEEECCCCCEEE
Confidence 34578888663 34445443333111 1 11233344467888887632 25666999987 8
Q ss_pred Ee
Q 002713 301 LD 302 (889)
Q Consensus 301 ~~ 302 (889)
+.
T Consensus 198 ~~ 199 (238)
T PF13360_consen 198 SK 199 (238)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 115
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.83 E-value=0.0031 Score=68.34 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=47.2
Q ss_pred CeEEEecCC-CC------------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-hHHHHHHHHHHhhcCCCc
Q 002713 586 PVKVFGDLH-GQ------------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-SLETITLLLALKIEYPEN 651 (889)
Q Consensus 586 ~i~vvGDiH-G~------------~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~-s~evl~ll~~lk~~~p~~ 651 (889)
++.+++|+| +. ...|.++++.+.....+ -+|++||+++.|.. +.+-+..++++-...+-.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d------~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p 75 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLD------FVVQLGDIIDGDNARAEEALDAVLAILDRLKGP 75 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCC------EEEECCCeecCCCchHHHHHHHHHHHHHhcCCC
Confidence 588999999 22 35566666666422222 68899999999873 223343334333333346
Q ss_pred EEEecCCCccchh
Q 002713 652 VHLIRGNHEAADI 664 (889)
Q Consensus 652 v~llrGNHE~~~~ 664 (889)
++.+.||||....
T Consensus 76 ~~~v~GNHD~~~~ 88 (267)
T cd07396 76 VHHVLGNHDLYNP 88 (267)
T ss_pred EEEecCccccccc
Confidence 9999999998643
No 116
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.81 E-value=0.46 Score=54.01 Aligned_cols=182 Identities=22% Similarity=0.237 Sum_probs=96.4
Q ss_pred CcEEEEECCCC--cEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCC
Q 002713 75 NSVHLYDVLTR--KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (889)
Q Consensus 75 ndv~~yD~~t~--~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~ 152 (889)
+.+++||..+. .|+.-... +...+.++.++.+|+.+.. ..+++||..+.+..|+.-.. + .
T Consensus 75 g~v~a~d~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~-~----~ 136 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLDE------RLSGGVGADGGLVFVGTEK-------GEVIALDAEDGKELWRAKLS-S----E 136 (377)
T ss_pred CeEEEEEccCCcEeeeecCCC------CcccceEEcCCEEEEEcCC-------CEEEEEECCCCcEeeeeccC-c----e
Confidence 46999998875 48743211 1222334456777765432 36999999988888975421 1 1
Q ss_pred ccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcc
Q 002713 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPL 232 (889)
Q Consensus 153 R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~ 232 (889)
...+. ++.++.+|+..+ + ..++.+|.++....|+.-..... ...+...+ .++.++.+| +|.. .
T Consensus 137 -~~~~p-~v~~~~v~v~~~-~-----g~l~a~d~~tG~~~W~~~~~~~~-~~~~~~~s-p~~~~~~v~-~~~~------~ 199 (377)
T TIGR03300 137 -VLSPP-LVANGLVVVRTN-D-----GRLTALDAATGERLWTYSRVTPA-LTLRGSAS-PVIADGGVL-VGFA------G 199 (377)
T ss_pred -eecCC-EEECCEEEEECC-C-----CeEEEEEcCCCceeeEEccCCCc-eeecCCCC-CEEECCEEE-EECC------C
Confidence 11222 233446666432 2 45899999988778986432210 00111122 233455554 4432 1
Q ss_pred cceEEEecccCCeeEEEeCCCCCC----Ccc---ceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCe--EEe
Q 002713 233 ADAYGLLMHRNGQWEWTLAPGVAP----SPR---YQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--WLD 302 (889)
Q Consensus 233 ~dv~~l~~~~~~~W~w~~~~~~~p----~~R---~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~--W~~ 302 (889)
..++.++..+ |+-.|........ ..| ...+.++.++.+|+... ...+++||+++.+ |+.
T Consensus 200 g~v~ald~~t-G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~----------~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 200 GKLVALDLQT-GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY----------QGRVAALDLRSGRVLWKR 267 (377)
T ss_pred CEEEEEEccC-CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc----------CCEEEEEECCCCcEEEee
Confidence 2477787653 3434543221110 011 12233456888888643 2358999998764 754
No 117
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.00017 Score=78.44 Aligned_cols=209 Identities=7% Similarity=-0.140 Sum_probs=142.4
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhcCCCc
Q 002713 619 IDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLP 698 (889)
Q Consensus 619 ~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP 698 (889)
...|+|+++++++.+.++.+-+-+..++.|-.+...+++||+. .++++.+.+..-...+...+|+..++.+..++
T Consensus 49 latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~-----~~~~R~~LVlp~l~S~riyvid~~~ep~~~~l 123 (476)
T KOG0918|consen 49 LATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGD-----SSFKRRYLVLPSLNSGRIYVIDVKTEPRKPSL 123 (476)
T ss_pred eeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccC-----cchhhhheeecccccCceEEEEeccCcCccce
Confidence 3789999999999999999999999999998899999999943 56677777766666677889999999999999
Q ss_pred eEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCchhhccccCCCCCCCC--CCCcccCCCCCceEEeCHH--HH
Q 002713 699 LAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDS--IEGLRPNARGPGLVTFGPD--RV 774 (889)
Q Consensus 699 laa~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~--~~~~~~n~rg~~~~~fg~~--~~ 774 (889)
...+.. +++|.||+..|+......+.++. +..-.+.....+. |-++.+.+. ..-|. .++.. ..||-| ..
T Consensus 124 ~k~i~~-~il~~~~l~~Pht~hcla~g~v~--vs~lGd~~gn~kg-~f~llD~~~~~k~tw~--~~~~~-p~~gyDfwyq 196 (476)
T KOG0918|consen 124 EKTIDP-DILEKTGLACPHTSHCLASGNVM--VSCLGDAEGNAKG-GFLLLDSDFNEKGTWE--KPGHS-PLFGYDFWYQ 196 (476)
T ss_pred eeeech-hhHhhcCCcCCcccccccCCCee--EEeecccccCCcC-CeEEecCccceecccc--cCCCc-cccccceeec
Confidence 998877 89999999999976655554321 1110000011111 333332210 01111 11111 222222 23
Q ss_pred HHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcCC--ceEEeEEeccC
Q 002713 775 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRG--LVVVPKLIHPL 841 (889)
Q Consensus 775 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~--~~~~~~~~~~~ 841 (889)
-.++.....+.+.+.|.-...++..+.++ ++.++.+-|.-...|.++.+-++.+ +.++.+.+|..
T Consensus 197 pr~~~mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~p 263 (476)
T KOG0918|consen 197 PRHNVMISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHNP 263 (476)
T ss_pred cccceEEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCccceeEEecCCCCcceEEeeeccCC
Confidence 34666677788888888654444556666 8899999998888899999999774 33455666643
No 118
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.73 E-value=0.0037 Score=67.12 Aligned_cols=71 Identities=23% Similarity=0.228 Sum_probs=45.2
Q ss_pred CeEEEecCCC-C-----------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHH----HHHHHHhhcCC
Q 002713 586 PVKVFGDLHG-Q-----------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI----TLLLALKIEYP 649 (889)
Q Consensus 586 ~i~vvGDiHG-~-----------~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl----~ll~~lk~~~p 649 (889)
+++.++|+|- . +..|.++++.+.-...+ -+|+.||++|+..-+.+.. .+|..|+...|
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D------~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~ 75 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQID------ALLVAGDVFDTANPPAEAQELFNAFFRNLSDANP 75 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 5789999993 2 22344444443222222 6889999999987655443 34444444333
Q ss_pred CcEEEecCCCccc
Q 002713 650 ENVHLIRGNHEAA 662 (889)
Q Consensus 650 ~~v~llrGNHE~~ 662 (889)
-.++++.||||..
T Consensus 76 i~v~~i~GNHD~~ 88 (253)
T TIGR00619 76 IPIVVISGNHDSA 88 (253)
T ss_pred ceEEEEccCCCCh
Confidence 5699999999985
No 119
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=96.72 E-value=0.0032 Score=63.37 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=27.2
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHHhhcCCCcEEEecCCCccc
Q 002713 620 DYLFLGDYVDRGQHS--LETITLLLALKIEYPENVHLIRGNHEAA 662 (889)
Q Consensus 620 ~~vfLGD~vDRG~~s--~evl~ll~~lk~~~p~~v~llrGNHE~~ 662 (889)
.+|++||++|..... .+...+-+.......-.+++++||||..
T Consensus 44 ~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 44 RLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred EEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccc
Confidence 799999999865432 2222211111223445799999999984
No 120
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.67 E-value=0.0041 Score=64.84 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=22.1
Q ss_pred eCHHHHHHHHHhcCCeEEEEeccccccc
Q 002713 769 FGPDRVSDFCKRNKLQLIIRAHECVMDG 796 (889)
Q Consensus 769 fg~~~~~~fl~~~~l~~iiR~H~~~~~G 796 (889)
..+..+.+.++..+.+++|-||.-...-
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~~ 203 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRPAL 203 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCe
Confidence 4556677888899999999999876433
No 121
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=96.60 E-value=0.16 Score=53.61 Aligned_cols=187 Identities=10% Similarity=0.137 Sum_probs=99.7
Q ss_pred CCcccccceeecCCCCCCCcccce--EEEeccccCCC-CEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcE
Q 002713 11 PSYRTLETYWDTDEDAPGPRCGHT--LTAVAATKTTG-PRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKW 87 (889)
Q Consensus 11 ~~yd~~~~~w~~~~~~P~pR~ght--~~~i~~~~~~~-~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W 87 (889)
-.+||.|++|..++.++.++..+. +..++-....+ =||+.+....... ....+.+|+..++.|
T Consensus 17 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~--------------~~~~~~Vys~~~~~W 82 (230)
T TIGR01640 17 VVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR--------------NQSEHQVYTLGSNSW 82 (230)
T ss_pred EEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC--------------CCccEEEEEeCCCCc
Confidence 346899999998876554322111 12221111112 2555554321110 235789999999999
Q ss_pred EEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEE-EeecCCCCCCc----cccEEEEEC
Q 002713 88 TRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHR-VVVQGQGPGPR----YGHVMDLVS 162 (889)
Q Consensus 88 ~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~-v~~~g~~p~~R----~~hs~~~~~ 162 (889)
+.+.... +........+.+++.+|.+...... .....+..||+.+++ |.. ++ +|..+ .....+.++
T Consensus 83 r~~~~~~--~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~--f~~~i~----~P~~~~~~~~~~~L~~~~ 153 (230)
T TIGR01640 83 RTIECSP--PHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSER--FKEFIP----LPCGNSDSVDYLSLINYK 153 (230)
T ss_pred cccccCC--CCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccce--Eeeeee----cCccccccccceEEEEEC
Confidence 9887322 1111222377889988888753211 111268899999976 774 42 23222 123455555
Q ss_pred CcEEEEEecCCCCcccCcEEEEe-cCCCCceEEEccCCCCCCCcccc---eEEEEecCCEEEEEcc
Q 002713 163 QRYLVSVSGNDGKRVLSDAWALD-TAQKPYVWQRLNPEGDRPSARMY---ATASARSDGMFLLCGG 224 (889)
Q Consensus 163 ~~~lyv~GG~~~~~~lndv~~yd-~~t~~~~W~~v~~~~~~P~~r~~---~~a~~~~~~~l~v~GG 224 (889)
+.|.++....... .-++|.++ -... .|++.-.....+.+... .......++.|++..+
T Consensus 154 -G~L~~v~~~~~~~-~~~IWvl~d~~~~--~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 154 -GKLAVLKQKKDTN-NFDLWVLNDAGKQ--EWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred -CEEEEEEecCCCC-cEEEEEECCCCCC--ceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 4676665433211 24788886 4345 69886443221222211 2333456677777664
No 122
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.51 E-value=0.0053 Score=68.86 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=44.8
Q ss_pred CeEEEecCC-C-----------CHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-CChHHHHHHHHH----HhhcC
Q 002713 586 PVKVFGDLH-G-----------QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLA----LKIEY 648 (889)
Q Consensus 586 ~i~vvGDiH-G-----------~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG-~~s~evl~ll~~----lk~~~ 648 (889)
+++.++|+| | +...|.++++.+.-...+ -+|+.||++|+. +.+.+++.++.. +-...
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD------~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~ 75 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGIT------TWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEA 75 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCC------EEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 588999999 4 223444554444322222 688999999985 445555444433 11123
Q ss_pred CCcEEEecCCCccch
Q 002713 649 PENVHLIRGNHEAAD 663 (889)
Q Consensus 649 p~~v~llrGNHE~~~ 663 (889)
+-.+++|.||||...
T Consensus 76 gi~v~~I~GNHD~~~ 90 (340)
T PHA02546 76 GITLHVLVGNHDMYY 90 (340)
T ss_pred CCeEEEEccCCCccc
Confidence 456999999999743
No 123
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.51 E-value=0.0088 Score=63.80 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=38.5
Q ss_pred EEEecCC--CCH---HHHHHHHHHhC-CCCCCCCcceeeEEEeccccCCCC-----C-------hH----HHHHHHHHHh
Q 002713 588 KVFGDLH--GQF---GDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRGQ-----H-------SL----ETITLLLALK 645 (889)
Q Consensus 588 ~vvGDiH--G~~---~~l~~il~~~g-~~~~~~~~~~~~~vfLGD~vDRG~-----~-------s~----evl~ll~~lk 645 (889)
++++|+| +.. ..+..+++.+. ..+.... ...+|++||++|+.. . .. ++..+|..|.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~--~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 79 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASR--VKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP 79 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccC--ccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc
Confidence 6899999 432 22233444332 2110000 017899999999831 0 11 1233333333
Q ss_pred hcCCCcEEEecCCCccch
Q 002713 646 IEYPENVHLIRGNHEAAD 663 (889)
Q Consensus 646 ~~~p~~v~llrGNHE~~~ 663 (889)
. .-.|+++.||||...
T Consensus 80 ~--~~~v~~ipGNHD~~~ 95 (243)
T cd07386 80 S--HIKIIIIPGNHDAVR 95 (243)
T ss_pred c--CCeEEEeCCCCCccc
Confidence 2 346999999999853
No 124
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.50 E-value=0.008 Score=63.70 Aligned_cols=69 Identities=26% Similarity=0.305 Sum_probs=43.9
Q ss_pred CeEEEecCCCC------------HHHHHHHHHHhCCC--CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCc
Q 002713 586 PVKVFGDLHGQ------------FGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPEN 651 (889)
Q Consensus 586 ~i~vvGDiHG~------------~~~l~~il~~~g~~--~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~ 651 (889)
++.+++|||=. ...|.++++.+.-. ..+ -+|++||+++.|.. +....+.++..+.+-.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d------~vi~~GDl~~~~~~--~~~~~~~~~l~~~~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPD------LVLVTGDLTDDGSP--ESYERLRELLAALPIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCC------EEEECccCCCCCCH--HHHHHHHHHHhhcCCC
Confidence 47899999944 34566777655432 222 58899999998753 2222222222223456
Q ss_pred EEEecCCCccc
Q 002713 652 VHLIRGNHEAA 662 (889)
Q Consensus 652 v~llrGNHE~~ 662 (889)
++.++||||..
T Consensus 73 ~~~v~GNHD~~ 83 (240)
T cd07402 73 VYLLPGNHDDR 83 (240)
T ss_pred EEEeCCCCCCH
Confidence 99999999974
No 125
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.50 E-value=0.93 Score=51.49 Aligned_cols=184 Identities=17% Similarity=0.202 Sum_probs=99.5
Q ss_pred CCcEEEEECCCC--cEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCC
Q 002713 74 TNSVHLYDVLTR--KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (889)
Q Consensus 74 ~ndv~~yD~~t~--~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~ 151 (889)
.+.++.||..+. .|+.-.. + . ...+.+..++.+|+..+ ...++++|+.+.+..|+.-.. ++...
T Consensus 114 ~g~l~ald~~tG~~~W~~~~~-~----~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~-~~~~~ 179 (377)
T TIGR03300 114 KGEVIALDAEDGKELWRAKLS-S----E-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRV-TPALT 179 (377)
T ss_pred CCEEEEEECCCCcEeeeeccC-c----e-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccC-CCcee
Confidence 356899998775 4874321 1 1 12233445778877644 235899999988888976421 11111
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCC--CCCCCccc--ceEEEEecCCEEEEEccCCC
Q 002713 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPE--GDRPSARM--YATASARSDGMFLLCGGRDA 227 (889)
Q Consensus 152 ~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~--~~~P~~r~--~~~a~~~~~~~l~v~GG~~~ 227 (889)
.+...+.++.+ +.+| +|..+ ..++.+|+.+....|+.-... +.....+. ..+...+.++.+|+.+.
T Consensus 180 ~~~~~sp~~~~-~~v~-~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~--- 249 (377)
T TIGR03300 180 LRGSASPVIAD-GGVL-VGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY--- 249 (377)
T ss_pred ecCCCCCEEEC-CEEE-EECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc---
Confidence 12223333444 4554 44433 268899998876678653211 00000010 11122345677777542
Q ss_pred CCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCC--eEEe
Q 002713 228 SGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLD 302 (889)
Q Consensus 228 ~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~--~W~~ 302 (889)
...+++++..+ +.=.|....+. ..+.++.++++|+... ...++++|..+. .|+.
T Consensus 250 ----~g~l~a~d~~t-G~~~W~~~~~~------~~~p~~~~~~vyv~~~----------~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 250 ----QGRVAALDLRS-GRVLWKRDASS------YQGPAVDDNRLYVTDA----------DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ----CCEEEEEECCC-CcEEEeeccCC------ccCceEeCCEEEEECC----------CCeEEEEECCCCcEEEcc
Confidence 12478888753 34345443211 1233456889998753 245899999876 4764
No 126
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=96.48 E-value=0.073 Score=57.92 Aligned_cols=73 Identities=26% Similarity=0.325 Sum_probs=50.4
Q ss_pred CeEEEecCCCC------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHH--hhcCCCcEEEecC
Q 002713 586 PVKVFGDLHGQ------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLAL--KIEYPENVHLIRG 657 (889)
Q Consensus 586 ~i~vvGDiHG~------~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~l--k~~~p~~v~llrG 657 (889)
++..|+|+|-- ...+..+++.+.....+ -+|+.||+.++|. .+-+..+..+ +...|..+++++|
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D------~~v~tGDl~~~~~--~~~~~~~~~~l~~~~~~~~~~~vpG 73 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKPD------LLVVTGDLTNDGE--PEEYRRLKELLARLELPAPVIVVPG 73 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCCC------EEEEccCcCCCCC--HHHHHHHHHHHhhccCCCceEeeCC
Confidence 57889999977 34556666777644444 7999999999963 2222233222 3367788999999
Q ss_pred CCccchhhh
Q 002713 658 NHEAADINA 666 (889)
Q Consensus 658 NHE~~~~~~ 666 (889)
|||....+.
T Consensus 74 NHD~~~~~~ 82 (301)
T COG1409 74 NHDARVVNG 82 (301)
T ss_pred CCcCCchHH
Confidence 999876544
No 127
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.27 E-value=0.013 Score=61.63 Aligned_cols=69 Identities=22% Similarity=0.193 Sum_probs=41.0
Q ss_pred CCeEEEecCC-CCHHH----------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh---HHHHHHHHHH
Q 002713 585 APVKVFGDLH-GQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS---LETITLLLAL 644 (889)
Q Consensus 585 ~~i~vvGDiH-G~~~~----------------l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s---~evl~ll~~l 644 (889)
+.+.||+|+| |.-.. |.++.+.......+ .+|++||+++..... -++..+|..+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d------~vIi~GDl~h~~~~~~~~~~~~~~l~~~ 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIE------ALIINGDLKHEFKKGLEWRFIREFIEVT 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCC------EEEEcCccccccCChHHHHHHHHHHHhc
Confidence 6689999999 54222 22222222221122 799999999765543 2222233332
Q ss_pred hhcCCCcEEEecCCCccch
Q 002713 645 KIEYPENVHLIRGNHEAAD 663 (889)
Q Consensus 645 k~~~p~~v~llrGNHE~~~ 663 (889)
...+++++||||...
T Consensus 89 ----~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 89 ----FRDLILIRGNHDALI 103 (225)
T ss_pred ----CCcEEEECCCCCCcc
Confidence 247999999999753
No 128
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.23 E-value=0.0069 Score=59.96 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=27.9
Q ss_pred eEEEeccccCCCCCh-HH----HHHHHHHHhhcC-CCcEEEecCCCccch
Q 002713 620 DYLFLGDYVDRGQHS-LE----TITLLLALKIEY-PENVHLIRGNHEAAD 663 (889)
Q Consensus 620 ~~vfLGD~vDRG~~s-~e----vl~ll~~lk~~~-p~~v~llrGNHE~~~ 663 (889)
.+||+||++|.+... .+ .+..+.++.... .-.++++.||||...
T Consensus 41 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 41 VVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 689999999988642 12 222222222222 346999999999743
No 129
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=96.21 E-value=0.023 Score=62.21 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=26.0
Q ss_pred CHHHHHHHHHhcCCeEEEEeccccccceEEecCCeEE
Q 002713 770 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLI 806 (889)
Q Consensus 770 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~i 806 (889)
....+.+.|+++++++++-||.-.-.-+....+++++
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~ 217 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV 217 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEec
Confidence 3456778899999999999998764433333455544
No 130
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.21 E-value=0.011 Score=67.66 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=43.3
Q ss_pred CeEEEecCC-CC-H------HH----HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHH----HHHHHHhhcCC
Q 002713 586 PVKVFGDLH-GQ-F------GD----LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI----TLLLALKIEYP 649 (889)
Q Consensus 586 ~i~vvGDiH-G~-~------~~----l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl----~ll~~lk~~~p 649 (889)
+++.++|+| |. + .+ |.++.+.+.-...+ -+|+.||++|++..+.+.. .++..|+. .+
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D------~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~ 74 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVD------AIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TG 74 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCC------EEEECCccccCCCCcHHHHHHHHHHHHHHHh-cC
Confidence 578999999 42 1 11 22333333222222 6889999999986654433 33344443 23
Q ss_pred CcEEEecCCCccch
Q 002713 650 ENVHLIRGNHEAAD 663 (889)
Q Consensus 650 ~~v~llrGNHE~~~ 663 (889)
-.+++|.||||...
T Consensus 75 ~~v~~I~GNHD~~~ 88 (407)
T PRK10966 75 CQLVVLAGNHDSVA 88 (407)
T ss_pred CcEEEEcCCCCChh
Confidence 46999999999754
No 131
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.11 E-value=0.015 Score=63.20 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=45.4
Q ss_pred CeEEEecCC-C-----------CHHHHHHHHHHhCC-C-CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCc
Q 002713 586 PVKVFGDLH-G-----------QFGDLMRLFDEYGF-P-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPEN 651 (889)
Q Consensus 586 ~i~vvGDiH-G-----------~~~~l~~il~~~g~-~-~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~ 651 (889)
+++.|+|+| . ....|.++++.+.. . ..+ -+|+.||++|.|. .+-+..+++.-.+.+..
T Consensus 16 ~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D------~vvitGDl~~~~~--~~~~~~~~~~l~~l~~P 87 (275)
T PRK11148 16 RILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFD------LIVATGDLAQDHS--SEAYQHFAEGIAPLRKP 87 (275)
T ss_pred EEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCC------EEEECCCCCCCCC--HHHHHHHHHHHhhcCCc
Confidence 589999999 1 24567777766532 1 122 5889999999885 33333333333334556
Q ss_pred EEEecCCCccc
Q 002713 652 VHLIRGNHEAA 662 (889)
Q Consensus 652 v~llrGNHE~~ 662 (889)
++++.||||..
T Consensus 88 v~~v~GNHD~~ 98 (275)
T PRK11148 88 CVWLPGNHDFQ 98 (275)
T ss_pred EEEeCCCCCCh
Confidence 99999999973
No 132
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=95.99 E-value=0.017 Score=61.22 Aligned_cols=46 Identities=9% Similarity=-0.001 Sum_probs=30.3
Q ss_pred CHHHHHHHHHhcCCeEEEEeccccccceE---EecCCeEEEEecccccCCC
Q 002713 770 GPDRVSDFCKRNKLQLIIRAHECVMDGFE---RFAQGQLITLFSATNYCGT 817 (889)
Q Consensus 770 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~---~~~~~~~itvfSa~~y~~~ 817 (889)
+...+.+.+++.++++++-||.-...-.. ...+| |+.+++|.=|-.
T Consensus 181 ~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~g--i~~~~~~~~~~~ 229 (232)
T cd07393 181 DDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGG--IRYQLVSADYLN 229 (232)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcccccccceECC--EEEEEEcchhcC
Confidence 55677888999999999999986533222 12333 567776655533
No 133
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=95.93 E-value=0.023 Score=58.56 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=29.8
Q ss_pred eEEEeccccCCCCC---hHHHHHHHHHHhhcCCCcEEEecCCCc
Q 002713 620 DYLFLGDYVDRGQH---SLETITLLLALKIEYPENVHLIRGNHE 660 (889)
Q Consensus 620 ~~vfLGD~vDRG~~---s~evl~ll~~lk~~~p~~v~llrGNHE 660 (889)
.+|++||+++.+.. +.+.+..++.......-.++++.||||
T Consensus 44 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 44 LVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred EEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 68999999997765 355666555543333456899999999
No 134
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.52 E-value=0.036 Score=63.28 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=53.3
Q ss_pred CCeEEEecCCCC------------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhc-----
Q 002713 585 APVKVFGDLHGQ------------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIE----- 647 (889)
Q Consensus 585 ~~i~vvGDiHG~------------~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~----- 647 (889)
.+|.+++|+|-- +..|.++++.+.-...+ -+|+.||++|++.-|.+++..++.+-.+
T Consensus 4 mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD------~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~ 77 (405)
T TIGR00583 4 IRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVD------MILLGGDLFHENKPSRKSLYQVLRSLRLYCLGD 77 (405)
T ss_pred eEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHhhccC
Confidence 358999999942 45677777776433333 5888999999999999988776654332
Q ss_pred -------------------------------CCCcEEEecCCCccch
Q 002713 648 -------------------------------YPENVHLIRGNHEAAD 663 (889)
Q Consensus 648 -------------------------------~p~~v~llrGNHE~~~ 663 (889)
..--||+|-||||...
T Consensus 78 ~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 78 KPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred CccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1235999999999864
No 135
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=95.48 E-value=0.26 Score=53.06 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=26.8
Q ss_pred cccCCCCCc--eE-EeCHHHHHHHHHhcCCeEEEEeccc
Q 002713 757 LRPNARGPG--LV-TFGPDRVSDFCKRNKLQLIIRAHEC 792 (889)
Q Consensus 757 ~~~n~rg~~--~~-~fg~~~~~~fl~~~~l~~iiR~H~~ 792 (889)
+.+.+++.| .. .-.++..++.|+..+-.+|.-||+-
T Consensus 188 ~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH 226 (257)
T cd08163 188 KTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDH 226 (257)
T ss_pred CCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCC
Confidence 344444444 11 3588999999999999999999984
No 136
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.42 E-value=7.8 Score=45.82 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=64.6
Q ss_pred CCcEEEEECCCC--cEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCC--CCccCcEEEEEccCCceEEEEEeecCCC
Q 002713 74 TNSVHLYDVLTR--KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPA--GHSTDDLYVLDLTNDKFKWHRVVVQGQG 149 (889)
Q Consensus 74 ~ndv~~yD~~t~--~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~--~~~~~dv~~yD~~t~~~~W~~v~~~g~~ 149 (889)
.+.++.+|..+. .|+.-......+.-....+.++.++.+|+....... ......+++||..+.+..|+.-.....+
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~ 198 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDP 198 (488)
T ss_pred CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCc
Confidence 357999999875 587532111000001223345556666654321110 0134679999999988889764321111
Q ss_pred CCCc---------------cccEEEEE-CCcEEEEEecCCC------------CcccCcEEEEecCCCCceEEEc
Q 002713 150 PGPR---------------YGHVMDLV-SQRYLVSVSGNDG------------KRVLSDAWALDTAQKPYVWQRL 196 (889)
Q Consensus 150 p~~R---------------~~hs~~~~-~~~~lyv~GG~~~------------~~~lndv~~yd~~t~~~~W~~v 196 (889)
...+ .-.+.++. .++.+|+..+... ....+.++.+|..+....|+.-
T Consensus 199 ~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 199 NAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred CCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 1111 11122222 3456666544320 1123579999999988899864
No 137
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.18 E-value=9.2 Score=45.24 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=61.2
Q ss_pred CcEEEEECCCC--cEEEecCCCCC-Ccc-cCccEEEEEC-CEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCC
Q 002713 75 NSVHLYDVLTR--KWTRIRPAGEP-PSP-RAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQG 149 (889)
Q Consensus 75 ndv~~yD~~t~--~W~~l~~~g~~-P~~-R~~haa~~~~-~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~ 149 (889)
..++.+|..+. .|+.-...... ..+ -.....++.+ ++||+... ...++.+|..+.+..|+.-......
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~ 143 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVALDAETGKQVWKFGNNDQVP 143 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEEECCCCCEeeeecCCCCcC
Confidence 46899998875 58753322100 001 1112234445 77777543 2468999999988889864211100
Q ss_pred CCCccccEEEEECCcEEEEEecCCCC----cccCcEEEEecCCCCceEEEc
Q 002713 150 PGPRYGHVMDLVSQRYLVSVSGNDGK----RVLSDAWALDTAQKPYVWQRL 196 (889)
Q Consensus 150 p~~R~~hs~~~~~~~~lyv~GG~~~~----~~lndv~~yd~~t~~~~W~~v 196 (889)
+......+.++.+ +.+|+ |..+.. .....+++||..+....|+.-
T Consensus 144 ~~~~i~ssP~v~~-~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 144 PGYTMTGAPTIVK-KLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred cceEecCCCEEEC-CEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 1111122333334 46664 432221 234678999999987789764
No 138
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=95.09 E-value=2.3 Score=44.13 Aligned_cols=205 Identities=18% Similarity=0.195 Sum_probs=116.3
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEecccc--CCCCChHHHHHH-HHHHhhcCCCcEEEecCCCcc
Q 002713 585 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYV--DRGQHSLETITL-LLALKIEYPENVHLIRGNHEA 661 (889)
Q Consensus 585 ~~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~v--DRG~~s~evl~l-l~~lk~~~p~~v~llrGNHE~ 661 (889)
.++..+.||||.++.|.++++.......+ -+++.||+. ++|+.-.-.-.. +..++. +--.++.+.||-|.
T Consensus 4 mkil~vtDlHg~~~~~~k~~~~~~~~~~D------~lviaGDlt~~~~~~~~~~~~~~~~e~l~~-~~~~v~avpGNcD~ 76 (226)
T COG2129 4 MKILAVTDLHGSEDSLKKLLNAAADIRAD------LLVIAGDLTYFHFGPKEVAEELNKLEALKE-LGIPVLAVPGNCDP 76 (226)
T ss_pred ceEEEEeccccchHHHHHHHHHHhhccCC------EEEEecceehhhcCchHHHHhhhHHHHHHh-cCCeEEEEcCCCCh
Confidence 46899999999999999998887644333 678899999 887643222211 344432 33579999999887
Q ss_pred chhhhhcCChHHHHHHhCCCCchhhhhhhhhhcCCCceEEEEcCeEEEecCCCCCCCc------CHHHhhcccCCcccCC
Q 002713 662 ADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIH------SVEQIEKLERPITMDA 735 (889)
Q Consensus 662 ~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~i~~vHgGi~~~~~------~~~~i~~~~rp~~~~~ 735 (889)
..+-.. +...+. .+.. -...+++--||-=||..|.-- +-++|...-+-.....
T Consensus 77 ~~v~~~-------l~~~~~----~v~~----------~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~ 135 (226)
T COG2129 77 PEVIDV-------LKNAGV----NVHG----------RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKA 135 (226)
T ss_pred HHHHHH-------HHhccc----cccc----------ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcc
Confidence 544221 111211 1111 112344445555578876531 3455554332211111
Q ss_pred CCchhhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccC
Q 002713 736 GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYC 815 (889)
Q Consensus 736 ~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~ 815 (889)
....-.=++-+-|-. ...+ .+-| ...-|..++.+++++.+-.+.|-||=--..|++.- | =||+-.|.-.
T Consensus 136 ~~~~~Il~~HaPP~g-t~~d----~~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~i--G--~TivVNPG~~ 204 (226)
T COG2129 136 DNPVNILLTHAPPYG-TLLD----TPSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKI--G--NTIVVNPGPL 204 (226)
T ss_pred cCcceEEEecCCCCC-cccc----CCCC--ccccchHHHHHHHHHhCCceEEEeeeccccccccc--C--CeEEECCCCc
Confidence 010001112333432 1111 2333 23458899999999999999999986656777642 2 2566665443
Q ss_pred CCCCCeEEEEEEcCC
Q 002713 816 GTANNAGAILVVGRG 830 (889)
Q Consensus 816 ~~~~n~ga~l~~~~~ 830 (889)
+ .-..|++.+++.
T Consensus 205 ~--~g~yA~i~l~~~ 217 (226)
T COG2129 205 G--EGRYALIELEKE 217 (226)
T ss_pred c--CceEEEEEecCc
Confidence 2 235688888776
No 139
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=95.06 E-value=0.058 Score=55.03 Aligned_cols=63 Identities=21% Similarity=0.188 Sum_probs=40.2
Q ss_pred cCCCCHHHHHHHHHHhCC--CCCCCCcceeeEEEeccccCCCCCh-HHHHHHHHHHhhcC--------------------
Q 002713 592 DLHGQFGDLMRLFDEYGF--PSTAGDITYIDYLFLGDYVDRGQHS-LETITLLLALKIEY-------------------- 648 (889)
Q Consensus 592 DiHG~~~~l~~il~~~g~--~~~~~~~~~~~~vfLGD~vDRG~~s-~evl~ll~~lk~~~-------------------- 648 (889)
|++|+=.=|.++++..-. .|+ .++||||++|.|--+ -|--..+..++..+
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~Pd-------~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~ 96 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKPD-------AVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFED 96 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCC-------EEEEeccccCCCcccHHHHHHHHHHHHHHhcCCccccccccccccccccc
Confidence 456666667777766542 222 688999999998533 33334444454433
Q ss_pred -CCcEEEecCCCcc
Q 002713 649 -PENVHLIRGNHEA 661 (889)
Q Consensus 649 -p~~v~llrGNHE~ 661 (889)
.-.+++|.||||.
T Consensus 97 ~~i~~i~V~GNHDI 110 (193)
T cd08164 97 GKTPLINIAGNHDV 110 (193)
T ss_pred CCceEEEECCcccC
Confidence 1357899999998
No 140
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=94.97 E-value=0.054 Score=58.26 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=22.5
Q ss_pred HHHHHHhcCCeEEEEeccccccceEEec
Q 002713 774 VSDFCKRNKLQLIIRAHECVMDGFERFA 801 (889)
Q Consensus 774 ~~~fl~~~~l~~iiR~H~~~~~G~~~~~ 801 (889)
+.+.|++.++++++-||.-...+.+..+
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~h 217 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPVH 217 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceeee
Confidence 7788999999999999998766645443
No 141
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.86 E-value=1.2 Score=48.32 Aligned_cols=111 Identities=14% Similarity=0.215 Sum_probs=69.3
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCc--cEEEEE-CCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeec--CC
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAA--HAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ--GQ 148 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~--haa~~~-~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~--g~ 148 (889)
-..+..||+.+.+|..+... -.+ .++... ++.||+.|-..-.+.....+-.||..+.+ |..+... ..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~------i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ 86 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG------ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNS 86 (281)
T ss_pred CCEEEEEECCCCEeecCCCC------ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCccccc
Confidence 56899999999999976532 222 233333 57888888765444345667889999955 9888542 24
Q ss_pred CCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccC
Q 002713 149 GPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNP 198 (889)
Q Consensus 149 ~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~ 198 (889)
.|.+....+....+...+++.|... .-..-+..|| .. +|..+..
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~d--Gs--~W~~i~~ 130 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSA--NGSTFLMKYD--GS--SWSSIGS 130 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceec--CCCceEEEEc--CC--ceEeccc
Confidence 5666544444334555677777652 1223355554 34 7999875
No 142
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=94.67 E-value=0.069 Score=53.74 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=28.5
Q ss_pred eEEEeccccCCCCCh--HH---HHHHHHHHhhcC-----CCcEEEecCCCccch
Q 002713 620 DYLFLGDYVDRGQHS--LE---TITLLLALKIEY-----PENVHLIRGNHEAAD 663 (889)
Q Consensus 620 ~~vfLGD~vDRG~~s--~e---vl~ll~~lk~~~-----p~~v~llrGNHE~~~ 663 (889)
.+|||||++|.|... .+ .+..+..+.... .-.+++|.||||...
T Consensus 48 ~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 48 VVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred EEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 689999999998743 22 233333322111 346999999999853
No 143
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.48 E-value=0.084 Score=51.80 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=47.9
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCc
Q 002713 588 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 660 (889)
Q Consensus 588 ~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 660 (889)
.|+||+||+++.+..-++.+.-. .+.+ .-+|++||+..-....-+ +.-++.=+.+.|--.|++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k--~gpF--d~~ic~Gdff~~~~~~~~-~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKK--KGPF--DALLCVGDFFGDDEDDEE-LEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcc--cCCe--eEEEEecCccCCccchhh-HHHHhcCCccCCCCEEEECCCCC
Confidence 48999999999998887775321 1211 257889999976655533 33333445567888999999998
No 144
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.38 E-value=1 Score=50.69 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=73.5
Q ss_pred ECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCc------ccc
Q 002713 161 VSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP------LAD 234 (889)
Q Consensus 161 ~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~------~~d 234 (889)
+.+.+|+..+.. ..+..||+.+. .-...+. ++.+...- .++..+++||++......... .-+
T Consensus 74 l~gskIv~~d~~------~~t~vyDt~t~--av~~~P~---l~~pk~~p-isv~VG~~LY~m~~~~~~~~~~~~~~~~FE 141 (342)
T PF07893_consen 74 LHGSKIVAVDQS------GRTLVYDTDTR--AVATGPR---LHSPKRCP-ISVSVGDKLYAMDRSPFPEPAGRPDFPCFE 141 (342)
T ss_pred ecCCeEEEEcCC------CCeEEEECCCC--eEeccCC---CCCCCcce-EEEEeCCeEEEeeccCccccccCccceeEE
Confidence 344577776544 34789999997 3333333 34444444 334456679999876433221 112
Q ss_pred eEEEec-----ccCCeeEEEeCCCCCCCccc-------eeEEEEE-CCEEEE-EcCCCCCCCCccCCCcEEEEECCCCeE
Q 002713 235 AYGLLM-----HRNGQWEWTLAPGVAPSPRY-------QHAAVFV-GARLHV-TGGALRGGRAIEGEAAVAVLDTAAGVW 300 (889)
Q Consensus 235 v~~l~~-----~~~~~W~w~~~~~~~p~~R~-------~hs~~~~-~~~lyV-~GG~~~~~~~~~~~~~v~~yD~~t~~W 300 (889)
+..++. .....|.|..++.. |..+. -.+-+++ |..|+| .-|.. ...+.||+.+.+|
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP~P-Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysfDt~~~~W 211 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLPPP-PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSFDTESHEW 211 (342)
T ss_pred EeccccccccccCCCcceEEcCCCC-CccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEEEcCCcce
Confidence 333331 34679999999774 44433 2344556 777888 43321 2389999999999
Q ss_pred EeccC
Q 002713 301 LDRNG 305 (889)
Q Consensus 301 ~~v~~ 305 (889)
+++..
T Consensus 212 ~~~Gd 216 (342)
T PF07893_consen 212 RKHGD 216 (342)
T ss_pred eeccc
Confidence 98754
No 145
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=94.22 E-value=0.17 Score=52.85 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=44.5
Q ss_pred cCCeEEEecCCCCHHHHH----------------HHHHH-h-CCCCCCCCcceeeEEEeccccCCCC-----ChHHHHHH
Q 002713 584 RAPVKVFGDLHGQFGDLM----------------RLFDE-Y-GFPSTAGDITYIDYLFLGDYVDRGQ-----HSLETITL 640 (889)
Q Consensus 584 ~~~i~vvGDiHG~~~~l~----------------~il~~-~-g~~~~~~~~~~~~~vfLGD~vDRG~-----~s~evl~l 640 (889)
..++.|+.|+|=-|+..+ +.++. . .+.+ + ++|+|||.-.-.+ ...|+-.+
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p-~------~lIilGD~KH~~~~~~~~e~~~~~~f 91 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGP-K------RLIILGDLKHEFGKSLRQEKEEVREF 91 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCC-C------EEEEcCccccccCccccccHHHHHHH
Confidence 478999999996554333 22221 1 1112 1 7999999985433 34555555
Q ss_pred HHHHhhcCCCcEEEecCCCccchh
Q 002713 641 LLALKIEYPENVHLIRGNHEAADI 664 (889)
Q Consensus 641 l~~lk~~~p~~v~llrGNHE~~~~ 664 (889)
+-.++.. .++++|||||...-
T Consensus 92 ~~~~~~~---evi~i~GNHD~~i~ 112 (235)
T COG1407 92 LELLDER---EVIIIRGNHDNGIE 112 (235)
T ss_pred HHHhccC---cEEEEeccCCCccc
Confidence 5555433 49999999998543
No 146
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=94.08 E-value=0.059 Score=55.04 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=32.4
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHHhhcCC----CcEEEecCCCccc
Q 002713 620 DYLFLGDYVDRGQHS--LETITLLLALKIEYP----ENVHLIRGNHEAA 662 (889)
Q Consensus 620 ~~vfLGD~vDRG~~s--~evl~ll~~lk~~~p----~~v~llrGNHE~~ 662 (889)
-+|||||++|.|+.+ .|....+..++..|. -.++.|.||||.-
T Consensus 45 ~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 45 IVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred EEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 689999999999853 346776766664433 4588999999974
No 147
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=93.85 E-value=0.13 Score=56.04 Aligned_cols=71 Identities=23% Similarity=0.221 Sum_probs=46.1
Q ss_pred CCeEEEecCCCCHHH--HHHHHHHhCCCCCCCCcceeeEEEeccccCC-CCChH-HHHHHHHHHhhcCCCcEEEecCCCc
Q 002713 585 APVKVFGDLHGQFGD--LMRLFDEYGFPSTAGDITYIDYLFLGDYVDR-GQHSL-ETITLLLALKIEYPENVHLIRGNHE 660 (889)
Q Consensus 585 ~~i~vvGDiHG~~~~--l~~il~~~g~~~~~~~~~~~~~vfLGD~vDR-G~~s~-evl~ll~~lk~~~p~~v~llrGNHE 660 (889)
.+|+-+.|+|=.... ..+.+........+ -+++.|||+|+ .+... .++..|..|+.. -.+|.+.||||
T Consensus 45 ~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~D------livltGD~~~~~~~~~~~~~~~~L~~L~~~--~gv~av~GNHd 116 (284)
T COG1408 45 LKIVQLSDLHSLPFREEKLALLIAIANELPD------LIVLTGDYVDGDRPPGVAALALFLAKLKAP--LGVFAVLGNHD 116 (284)
T ss_pred eEEEEeehhhhchhhHHHHHHHHHHHhcCCC------EEEEEeeeecCCCCCCHHHHHHHHHhhhcc--CCEEEEecccc
Confidence 359999999987655 22233332222223 68999999996 55444 455555556544 56999999998
Q ss_pred cch
Q 002713 661 AAD 663 (889)
Q Consensus 661 ~~~ 663 (889)
...
T Consensus 117 ~~~ 119 (284)
T COG1408 117 YGV 119 (284)
T ss_pred ccc
Confidence 743
No 148
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.80 E-value=0.27 Score=51.23 Aligned_cols=196 Identities=22% Similarity=0.260 Sum_probs=103.7
Q ss_pred EEecCCCC------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccC--CCCC-----hHHHHHHHHHHhhcCCCcEEEe
Q 002713 589 VFGDLHGQ------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVD--RGQH-----SLETITLLLALKIEYPENVHLI 655 (889)
Q Consensus 589 vvGDiHG~------~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vD--RG~~-----s~evl~ll~~lk~~~p~~v~ll 655 (889)
.|+|+|=. -+.|+++++.... .++ .+.+|||++| .|.+ --+|...|..+. +-..+++.+
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~-~ad------~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a-~~G~~v~~i 73 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAA-QAD------ALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA-RKGTRVYYI 73 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccc-cCc------EEEEechhhhhhhcCCcccHHHHHHHHHHHHHH-hcCCeEEEe
Confidence 57888844 3445566655432 233 7889999997 2322 234555555543 345789999
Q ss_pred cCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhcCCCceEEEE---cCeEEEecCCCCCCCc------------C
Q 002713 656 RGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI---EKKIICMHGGIGRSIH------------S 720 (889)
Q Consensus 656 rGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i---~~~i~~vHgGi~~~~~------------~ 720 (889)
.||||. .+...+ ....| .+.-+|-..++ +.+++++||-.-.... -
T Consensus 74 ~GN~Df-ll~~~f------~~~~g-------------~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~ 133 (237)
T COG2908 74 HGNHDF-LLGKRF------AQEAG-------------GMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWA 133 (237)
T ss_pred cCchHH-HHHHHH------HhhcC-------------ceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccH
Confidence 999994 332222 11111 12233444333 5799999997643211 0
Q ss_pred HHHhhcccCCcccCCCCchhhccccCCCCCCCCCCCcccCCCCCc--eEEeCHHHHHHHHHhcCCeEEEEeccccccceE
Q 002713 721 VEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPG--LVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 798 (889)
Q Consensus 721 ~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~--~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 798 (889)
..+..-+..|+..- ..+..=+|+.-. |.+...... +....+.++.+-+++++++.+|-||.-.+..-.
T Consensus 134 ~~~~lflnl~l~~R---~ri~~k~r~~s~-------~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~ 203 (237)
T COG2908 134 WLQLLFLNLPLRVR---RRIAYKIRSLSS-------WAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN 203 (237)
T ss_pred HHHHHHHHhHHHHH---HHHHHHHHHhhH-------HhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhcc
Confidence 11111112222100 011122454431 111110101 123467788889999999999999987755543
Q ss_pred EecCCeEEEEecccccC--CCCCCeEEEEEEcCCce
Q 002713 799 RFAQGQLITLFSATNYC--GTANNAGAILVVGRGLV 832 (889)
Q Consensus 799 ~~~~~~~itvfSa~~y~--~~~~n~ga~l~~~~~~~ 832 (889)
.. + ..|| |.-...++++.++.+..
T Consensus 204 i~--~--------~~yi~lGdW~~~~s~~~v~~~~~ 229 (237)
T COG2908 204 IP--G--------ITYINLGDWVSEGSILEVDDGGL 229 (237)
T ss_pred CC--C--------ceEEecCcchhcceEEEEecCcE
Confidence 31 1 2232 33335688998887754
No 149
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.54 E-value=21 Score=42.74 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=62.6
Q ss_pred CcEEEEECCCC--cEEEecCCC-CC-C---cccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecC
Q 002713 75 NSVHLYDVLTR--KWTRIRPAG-EP-P---SPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQG 147 (889)
Q Consensus 75 ndv~~yD~~t~--~W~~l~~~g-~~-P---~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g 147 (889)
+.++.+|..+. .|+.-.... .. + ......+.++.+++||+... ...++++|..+.+..|+.-. .
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~W~~~~--~ 149 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVVWSKKN--G 149 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEEeeccc--c
Confidence 46899998875 587533111 00 0 00112334566788887543 23599999999999997642 1
Q ss_pred CCCCC-ccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEc
Q 002713 148 QGPGP-RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL 196 (889)
Q Consensus 148 ~~p~~-R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v 196 (889)
..... ....+-++.+ +.+|+.........-..++.||.++....|+.-
T Consensus 150 ~~~~~~~~tssP~v~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 150 DYKAGYTITAAPLVVK-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccccccCCcEEEC-CEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 11111 1122233334 466654322222234678999999987778754
No 150
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=93.33 E-value=0.14 Score=54.73 Aligned_cols=66 Identities=32% Similarity=0.334 Sum_probs=41.9
Q ss_pred CeEEEecCCCCH---------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH-----HHHHHHHHHhhcCCCc
Q 002713 586 PVKVFGDLHGQF---------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-----ETITLLLALKIEYPEN 651 (889)
Q Consensus 586 ~i~vvGDiHG~~---------~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~-----evl~ll~~lk~~~p~~ 651 (889)
+|+.++|+||.+ ..|.++++...-...+ .-+|..||+++....+- .++..|-++ +-
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~-----~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~-----g~ 71 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENEN-----TLLLDAGDNFDGSPPSTATKGEANIELMNAL-----GY 71 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCC-----eEEEeCCccCCCccchhccCCcHHHHHHHhc-----CC
Confidence 478999999887 5566666665432111 14577999999887643 444444443 22
Q ss_pred EEEecCCCcc
Q 002713 652 VHLIRGNHEA 661 (889)
Q Consensus 652 v~llrGNHE~ 661 (889)
.++..||||.
T Consensus 72 d~~~~GNHe~ 81 (252)
T cd00845 72 DAVTIGNHEF 81 (252)
T ss_pred CEEeeccccc
Confidence 3345699996
No 151
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=92.94 E-value=1 Score=51.59 Aligned_cols=199 Identities=20% Similarity=0.209 Sum_probs=104.7
Q ss_pred CeEEEecCCC-CH----HHHHHHHHHhCCCCCCCCcceeeEEE-eccccCCC------------CChHHHHHHHHHHhhc
Q 002713 586 PVKVFGDLHG-QF----GDLMRLFDEYGFPSTAGDITYIDYLF-LGDYVDRG------------QHSLETITLLLALKIE 647 (889)
Q Consensus 586 ~i~vvGDiHG-~~----~~l~~il~~~g~~~~~~~~~~~~~vf-LGD~vDRG------------~~s~evl~ll~~lk~~ 647 (889)
.+.+++|+|= .. +.+.++++.++.+.+ .-...+|+. -||.||-. .+..|-...+..+-.+
T Consensus 227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~--~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~ 304 (481)
T COG1311 227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGD--LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQ 304 (481)
T ss_pred EEEEEeeeecccHHHHHHHHHHHHHHhcCCcc--cccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhh
Confidence 4889999995 22 334444555544432 112236665 77999942 2344455556665555
Q ss_pred CCCc--EEEecCCCccchhhhhc-CChHHHHHHhCCCCchhhhhhhhhhcCCCceEEEEcC-eEEEecCCCCCCCcCHHH
Q 002713 648 YPEN--VHLIRGNHEAADINALF-GFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQ 723 (889)
Q Consensus 648 ~p~~--v~llrGNHE~~~~~~~~-gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~-~i~~vHgGi~~~~~~~~~ 723 (889)
-|.+ |++.+|||+........ +|.......| ...+-.|-.=|.-.-+++ .+|..|| .+++|
T Consensus 305 vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf---------~~~n~~~v~NP~~~~l~G~~vL~~hG------~sidD 369 (481)
T COG1311 305 VPEHIKVFIMPGNHDAVRQALPQPHFPELIKSLF---------SLNNLLFVSNPALVSLHGVDVLIYHG------RSIDD 369 (481)
T ss_pred CCCCceEEEecCCCCccccccCCCCcchhhcccc---------cccceEecCCCcEEEECCEEEEEecC------CCHHH
Confidence 5655 78999999986543222 3333333222 222222222244444444 6888998 67888
Q ss_pred hhcccCCcccCCCCchhhc-cccCC--CCCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcCCeEEEEeccccccceEEe
Q 002713 724 IEKLERPITMDAGSIILMD-LLWSD--PTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERF 800 (889)
Q Consensus 724 i~~~~rp~~~~~~~~~~~d-llWsd--P~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~ 800 (889)
|...-.....+.-...+.. |.|.- |+--+ .....|.. .- -|.=.---++++-||+.. .|+..+
T Consensus 370 ii~~vP~~~~~~~~~ame~lLk~rHlaPtygg-~~p~aP~~--kD----------~lVIeevPDv~~~Ghvh~-~g~~~y 435 (481)
T COG1311 370 IIKLVPGADYDSPLKAMEELLKRRHLAPTYGG-TLPIAPET--KD----------YLVIEEVPDVFHTGHVHK-FGTGVY 435 (481)
T ss_pred HHhhCCCCCccchHHHHHHHHHhcccCCCCCC-ccccccCC--cC----------ceeeccCCcEEEEccccc-cceeEE
Confidence 7665433322111112222 22332 21100 00111111 00 011111256788999987 899998
Q ss_pred cCCeEEEEecccccC
Q 002713 801 AQGQLITLFSATNYC 815 (889)
Q Consensus 801 ~~~~~itvfSa~~y~ 815 (889)
.+.++|..++-+..-
T Consensus 436 ~gv~~vns~T~q~qT 450 (481)
T COG1311 436 EGVNLVNSGTWQEQT 450 (481)
T ss_pred eccceEEeeeecchh
Confidence 888999888887664
No 152
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=92.88 E-value=5.1 Score=42.96 Aligned_cols=179 Identities=17% Similarity=0.235 Sum_probs=87.9
Q ss_pred eEEEeccccCCCCC------------------hHHHHHHHHHHhhcCC--CcEEEecCCCccchhhhhcCChHHHHHHhC
Q 002713 620 DYLFLGDYVDRGQH------------------SLETITLLLALKIEYP--ENVHLIRGNHEAADINALFGFRLECIERMG 679 (889)
Q Consensus 620 ~~vfLGD~vDRG~~------------------s~evl~ll~~lk~~~p--~~v~llrGNHE~~~~~~~~gf~~e~~~~~~ 679 (889)
++|+.||.|+.-.. ..|-+..+-.+-.+-+ =.|.++.||||-.....-.--...|+ |.
T Consensus 45 rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~l--fp 122 (257)
T cd07387 45 RLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCL--FP 122 (257)
T ss_pred EEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHH--hh
Confidence 68889999985432 2333333333322222 24889999999876554332222221 11
Q ss_pred CCCchhhhhhhhhhcCCCceEEEEcC-eEEEecCCCCCCCcCHHHhhcccC---Cccc-------CCCCchhhccccCCC
Q 002713 680 ENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLER---PITM-------DAGSIILMDLLWSDP 748 (889)
Q Consensus 680 ~~~~~~~~~~~~~~f~~LPlaa~i~~-~i~~vHgGi~~~~~~~~~i~~~~r---p~~~-------~~~~~~~~dllWsdP 748 (889)
.. ..|..+ .+-.=|....+++ +++..|| +++++|.+.-. ++++ -.-.+..-|-||.=|
T Consensus 123 ~s---~~~~~~--~~vtNP~~~~i~g~~vLgtsG------qni~Di~ky~~~~~~l~~me~~L~wrHlaPTaPDTL~~yP 191 (257)
T cd07387 123 KS---SNYSTL--NLVTNPYEFSIDGVRVLGTSG------QNVDDILKYSSLESRLDILERTLKWRHIAPTAPDTLWCYP 191 (257)
T ss_pred cc---cccCCc--EEeCCCeEEEECCEEEEEECC------CCHHHHHHhCCCCCHHHHHHHHHHhcccCCCCCCcccccc
Confidence 10 001111 1112266667765 7888888 56667654321 1110 000112334556555
Q ss_pred CCCCCCCCcccCCCCCceEEeCHHHHHHHHHhcCCeEEEEeccccccceEEec--CCeEEEEecccccCCCCCCeEEEEE
Q 002713 749 TENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFA--QGQLITLFSATNYCGTANNAGAILV 826 (889)
Q Consensus 749 ~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~--~~~~itvfSa~~y~~~~~n~ga~l~ 826 (889)
-.. .+.|.-.. ==..++-|||.. -|.+.+. +++-+.+.|.|.|..+ .-++|+
T Consensus 192 ~~~--~Dpfvi~~--------------------~PhVyf~Gnq~~-f~t~~~~~~~~~~v~lv~vP~Fs~t---~~~vlv 245 (257)
T cd07387 192 FTD--RDPFILEE--------------------CPHVYFAGNQPK-FGTKLVEGEEGQRVLLVCVPSFSKT---GTAVLV 245 (257)
T ss_pred CCC--CCceeecC--------------------CCCEEEeCCCcc-eeeeEEEcCCCCeEEEEEeCCcCcC---CEEEEE
Confidence 211 01111110 033455688875 5555443 2667778888988643 234444
Q ss_pred EcCCceEEeEE
Q 002713 827 VGRGLVVVPKL 837 (889)
Q Consensus 827 ~~~~~~~~~~~ 837 (889)
-=+++.+.+..
T Consensus 246 dl~tLe~~~v~ 256 (257)
T cd07387 246 NLRTLECEPIS 256 (257)
T ss_pred ECCcCcEEEEe
Confidence 45567766543
No 153
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=92.77 E-value=0.46 Score=45.96 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=27.8
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccch
Q 002713 620 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 663 (889)
Q Consensus 620 ~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 663 (889)
.+.+|||+.-.-..--+...++-+| |++++|++||||.-.
T Consensus 48 ~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~ 87 (186)
T COG4186 48 VLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCH 87 (186)
T ss_pred eEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCc
Confidence 6889999985444434444444333 689999999999744
No 154
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=91.43 E-value=3.5 Score=46.36 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=73.1
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCc
Q 002713 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (889)
Q Consensus 45 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~ 124 (889)
+.||+..+.. ..+.+||+.+..-...+ .++.+...-.++.++++||++.........
T Consensus 76 gskIv~~d~~--------------------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~ 132 (342)
T PF07893_consen 76 GSKIVAVDQS--------------------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPA 132 (342)
T ss_pred CCeEEEEcCC--------------------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccc
Confidence 7788888654 23889999998776444 334555556778889999999876422111
Q ss_pred c----CcEEEE--E------ccCCceEEEEEeecCCCCCCccc-------cEEEEECCcEEEE-EecCCCCcccCcEEEE
Q 002713 125 T----DDLYVL--D------LTNDKFKWHRVVVQGQGPGPRYG-------HVMDLVSQRYLVS-VSGNDGKRVLSDAWAL 184 (889)
Q Consensus 125 ~----~dv~~y--D------~~t~~~~W~~v~~~g~~p~~R~~-------hs~~~~~~~~lyv-~GG~~~~~~lndv~~y 184 (889)
. ..++.+ + .....|.|+.++ ++|..+.. .+-+++++..|+| .-|.. ...|.|
T Consensus 133 ~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysf 204 (342)
T PF07893_consen 133 GRPDFPCFEALVYRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSF 204 (342)
T ss_pred cCccceeEEEeccccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEE
Confidence 0 144444 3 234568899983 33333322 1222334446665 22211 348999
Q ss_pred ecCCCCceEEEccC
Q 002713 185 DTAQKPYVWQRLNP 198 (889)
Q Consensus 185 d~~t~~~~W~~v~~ 198 (889)
|+.+. +|+++..
T Consensus 205 Dt~~~--~W~~~Gd 216 (342)
T PF07893_consen 205 DTESH--EWRKHGD 216 (342)
T ss_pred EcCCc--ceeeccc
Confidence 99999 8999843
No 155
>PLN02533 probable purple acid phosphatase
Probab=91.41 E-value=0.28 Score=56.72 Aligned_cols=70 Identities=19% Similarity=0.135 Sum_probs=39.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH--H-HHHHHHHHhhcCCCcEEEecCCCcc
Q 002713 585 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL--E-TITLLLALKIEYPENVHLIRGNHEA 661 (889)
Q Consensus 585 ~~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~--e-vl~ll~~lk~~~p~~v~llrGNHE~ 661 (889)
-+++|+||+|-. ......++.+.....+ -+|++||+++-+.+.- + -..++-.+....| ++.+.||||.
T Consensus 140 ~~f~v~GDlG~~-~~~~~tl~~i~~~~pD------~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P--~m~~~GNHE~ 210 (427)
T PLN02533 140 IKFAVSGDLGTS-EWTKSTLEHVSKWDYD------VFILPGDLSYANFYQPLWDTFGRLVQPLASQRP--WMVTHGNHEL 210 (427)
T ss_pred eEEEEEEeCCCC-cccHHHHHHHHhcCCC------EEEEcCccccccchHHHHHHHHHHhhhHhhcCc--eEEeCccccc
Confidence 458999999632 1122233333211122 5788999997654321 1 1223333333445 8899999998
Q ss_pred ch
Q 002713 662 AD 663 (889)
Q Consensus 662 ~~ 663 (889)
..
T Consensus 211 ~~ 212 (427)
T PLN02533 211 EK 212 (427)
T ss_pred cc
Confidence 54
No 156
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=89.98 E-value=0.43 Score=49.31 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=44.3
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-------------------------HHHHH
Q 002713 585 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------------------LETIT 639 (889)
Q Consensus 585 ~~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s-------------------------~evl~ 639 (889)
.+|..++|.||+++.|.++.+.+.-...+ -+||+||++-....+ .|.+.
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D------~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPD------AVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-S------EEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCC------EEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 46899999999999999998765432333 699999998655333 34444
Q ss_pred HHHHHhhcCCCcEEEecCCCccchh
Q 002713 640 LLLALKIEYPENVHLIRGNHEAADI 664 (889)
Q Consensus 640 ll~~lk~~~p~~v~llrGNHE~~~~ 664 (889)
-++..--..+--++.|+||||....
T Consensus 80 ~ff~~L~~~~~p~~~vPG~~Dap~~ 104 (255)
T PF14582_consen 80 KFFRILGELGVPVFVVPGNMDAPER 104 (255)
T ss_dssp HHHHHHHCC-SEEEEE--TTS-SHH
T ss_pred HHHHHHHhcCCcEEEecCCCCchHH
Confidence 4444445566679999999998543
No 157
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.71 E-value=41 Score=38.08 Aligned_cols=197 Identities=18% Similarity=0.274 Sum_probs=101.1
Q ss_pred CCcEEEEECCCCc--EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCC
Q 002713 74 TNSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (889)
Q Consensus 74 ~ndv~~yD~~t~~--W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~ 151 (889)
...++.+|+.+.+ |....... ..-.......-+++||+....+ .+|+||.++.+..|..-... .
T Consensus 77 ~G~i~A~d~~~g~~~W~~~~~~~---~~~~~~~~~~~~G~i~~g~~~g-------~~y~ld~~~G~~~W~~~~~~---~- 142 (370)
T COG1520 77 DGNIFALNPDTGLVKWSYPLLGA---VAQLSGPILGSDGKIYVGSWDG-------KLYALDASTGTLVWSRNVGG---S- 142 (370)
T ss_pred CCcEEEEeCCCCcEEecccCcCc---ceeccCceEEeCCeEEEecccc-------eEEEEECCCCcEEEEEecCC---C-
Confidence 3479999999875 87543210 0011111112256766665532 79999998888899876332 1
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCc
Q 002713 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 231 (889)
Q Consensus 152 ~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~ 231 (889)
.++.-. .++.++.+|+.- .-+.++++|..+....|..-...+ . ..+.. ......++.+|+...- .
T Consensus 143 ~~~~~~-~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~-~~~~~~~~~vy~~~~~----~- 207 (370)
T COG1520 143 PYYASP-PVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAP-L-SLSIY-GSPAIASGTVYVGSDG----Y- 207 (370)
T ss_pred eEEecC-cEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCc-c-ccccc-cCceeecceEEEecCC----C-
Confidence 333333 344554555432 235788999998777898544321 1 12212 2222566667764321 1
Q ss_pred ccceEEEecccCCeeEEEeCCCCCCCccce--eEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCC--eEEeccC
Q 002713 232 LADAYGLLMHRNGQWEWTLAPGVAPSPRYQ--HAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLDRNG 305 (889)
Q Consensus 232 ~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~--hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~--~W~~v~~ 305 (889)
...++.++... |+-.|...... +..+.. -...+.++.||+-||...... ...+.++|..+. .|+.-..
T Consensus 208 ~~~~~a~~~~~-G~~~w~~~~~~-~~~~~~~~~~~~~~~~~v~v~~~~~~~~~----~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 208 DGILYALNAED-GTLKWSQKVSQ-TIGRTAISTTPAVDGGPVYVDGGVYAGSY----GGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cceEEEEEccC-CcEeeeeeeec-ccCcccccccccccCceEEECCcEEEEec----CCeEEEEEcCCCceEEEEecc
Confidence 12578888753 35555532111 011100 012333555555555211010 233778887764 4876554
No 158
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=89.36 E-value=0.55 Score=51.07 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=15.9
Q ss_pred HHHHHHHh-cCCeEEEEecccc
Q 002713 773 RVSDFCKR-NKLQLIIRAHECV 793 (889)
Q Consensus 773 ~~~~fl~~-~~l~~iiR~H~~~ 793 (889)
...+++++ -++++||=||+-+
T Consensus 208 ~~~~la~~~~~vD~IlgGHsH~ 229 (277)
T cd07410 208 AAYELAEEVPGIDAILTGHQHR 229 (277)
T ss_pred HHHHHHhcCCCCcEEEeCCCcc
Confidence 34566666 6899999999865
No 159
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.80 E-value=5.9 Score=43.11 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=70.0
Q ss_pred EEEcCcCCCC-CccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCc-ccCcEEEEecCCCC
Q 002713 113 VFQGGIGPAG-HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWALDTAQKP 190 (889)
Q Consensus 113 yv~GG~~~~~-~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~-~lndv~~yd~~t~~ 190 (889)
||.|-....+ .....+-.||..+.+ |..+ +.--.... .++....++.+|+.|-..... ....+-.||..+.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~q--W~~~---g~~i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~- 74 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQ--WSSP---GNGISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ- 74 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCE--eecC---CCCceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC-
Confidence 4555444333 356778889999855 9988 33322211 233334566888877654443 4566788999999
Q ss_pred ceEEEccCC--CCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCCC
Q 002713 191 YVWQRLNPE--GDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPG 253 (889)
Q Consensus 191 ~~W~~v~~~--~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~ 253 (889)
+|+.+... ...|.+-..-.........+++.|.. ..+ ..-+..|+-. +|..+..
T Consensus 75 -~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~dGs-----~W~~i~~ 130 (281)
T PF12768_consen 75 -TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG--STFLMKYDGS-----SWSSIGS 130 (281)
T ss_pred -eeeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC--CceEEEEcCC-----ceEeccc
Confidence 99888762 34555532222222234467776665 332 2234555333 5666543
No 160
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=88.26 E-value=1.6 Score=39.32 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=32.4
Q ss_pred CchHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEee
Q 002713 531 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQL 583 (889)
Q Consensus 531 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~ 583 (889)
+..+++.+|+.+-+.+ .|+...+..|+.++.++|+++|+++++
T Consensus 53 t~efv~~mie~FK~~K----------~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 53 TLEFVKAMIEWFKNQK----------KLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp -HHHHHHHHHHHHCT--------------HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred CHHHHHHHHHHHHhCC----------CccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 4467788888877553 478899999999999999999999985
No 161
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=87.63 E-value=1.5 Score=50.33 Aligned_cols=73 Identities=21% Similarity=0.174 Sum_probs=47.5
Q ss_pred CeEEEecCCCC-------------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCC---
Q 002713 586 PVKVFGDLHGQ-------------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYP--- 649 (889)
Q Consensus 586 ~i~vvGDiHG~-------------~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p--- 649 (889)
++..++|+|=- +..|..+++.+.-...+ -+|+-||+.|++.=|.+++.++...-.+.-
T Consensus 2 kilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD------~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~ 75 (390)
T COG0420 2 KILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVD------FVLIAGDLFDTNNPSPRALKLFLEALRRLKDAG 75 (390)
T ss_pred eeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCC------EEEEccccccCCCCCHHHHHHHHHHHHHhccCC
Confidence 56778888843 23333444433222222 588899999999988888777666533221
Q ss_pred CcEEEecCCCccchh
Q 002713 650 ENVHLIRGNHEAADI 664 (889)
Q Consensus 650 ~~v~llrGNHE~~~~ 664 (889)
--|++|.||||....
T Consensus 76 Ipv~~I~GNHD~~~~ 90 (390)
T COG0420 76 IPVVVIAGNHDSPSR 90 (390)
T ss_pred CcEEEecCCCCchhc
Confidence 249999999998653
No 162
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=86.63 E-value=1.5 Score=49.59 Aligned_cols=42 Identities=33% Similarity=0.426 Sum_probs=32.2
Q ss_pred eEEEeccccCCCCC--hHHHHHHHHHHhhcCCC----cEEEecCCCcc
Q 002713 620 DYLFLGDYVDRGQH--SLETITLLLALKIEYPE----NVHLIRGNHEA 661 (889)
Q Consensus 620 ~~vfLGD~vDRG~~--s~evl~ll~~lk~~~p~----~v~llrGNHE~ 661 (889)
-++||||++|-|.. .-|--....++|..|+. .++.+.||||-
T Consensus 96 vvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 96 VVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred EEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 57889999998874 34555666667666665 58899999997
No 163
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=85.71 E-value=17 Score=41.24 Aligned_cols=192 Identities=17% Similarity=0.189 Sum_probs=97.7
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcE-EEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCC
Q 002713 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKW-TRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGH 123 (889)
Q Consensus 45 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W-~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~ 123 (889)
.--+++.+|..+ +-.+|..|-.+|.- +.+.-. ..|. .......-|...++++|..
T Consensus 224 ~~plllvaG~d~-----------------~lrifqvDGk~N~~lqS~~l~-~fPi--~~a~f~p~G~~~i~~s~rr---- 279 (514)
T KOG2055|consen 224 TAPLLLVAGLDG-----------------TLRIFQVDGKVNPKLQSIHLE-KFPI--QKAEFAPNGHSVIFTSGRR---- 279 (514)
T ss_pred CCceEEEecCCC-----------------cEEEEEecCccChhheeeeec-cCcc--ceeeecCCCceEEEecccc----
Confidence 345888888753 34566667666652 111111 1121 1111111233478888752
Q ss_pred ccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCC
Q 002713 124 STDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRP 203 (889)
Q Consensus 124 ~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P 203 (889)
.-+|.||+.+.+ -.++.....++ .+.-+...+..++.++++-|..| -++.+...|+ .|.. .. .-
T Consensus 280 --ky~ysyDle~ak--~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~--eli~--s~--Ki 343 (514)
T KOG2055|consen 280 --KYLYSYDLETAK--VTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTK--ELIT--SF--KI 343 (514)
T ss_pred --eEEEEeeccccc--cccccCCCCcc-cchhheeEecCCCCeEEEcccCc-----eEEeehhhhh--hhhh--ee--ee
Confidence 457999998855 55553322233 23344444444556777777765 3555666666 4421 11 01
Q ss_pred CcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCC-eeEEEeCCCCCCCccceeEEE-EECCEEEEEcCCCCCC
Q 002713 204 SARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNG-QWEWTLAPGVAPSPRYQHAAV-FVGARLHVTGGALRGG 281 (889)
Q Consensus 204 ~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~-~W~w~~~~~~~p~~R~~hs~~-~~~~~lyV~GG~~~~~ 281 (889)
..+....+......+|+++||. ..+|.++..... ...|+...+. ++-+.| ..++..+..|--
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~~-------GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S~ng~ylA~GS~---- 407 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGGT-------GEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCISLNGSYLATGSD---- 407 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcCC-------ceEEEEecCCcceEEEEeecCcc-----ceeeeeecCCCceEEeccC----
Confidence 2333333333344577777764 358888877552 2345444333 222333 346676666542
Q ss_pred CCccCCCcEEEEECCC
Q 002713 282 RAIEGEAAVAVLDTAA 297 (889)
Q Consensus 282 ~~~~~~~~v~~yD~~t 297 (889)
..-|-+||.++
T Consensus 408 -----~GiVNIYd~~s 418 (514)
T KOG2055|consen 408 -----SGIVNIYDGNS 418 (514)
T ss_pred -----cceEEEeccch
Confidence 22366777654
No 164
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=84.72 E-value=1.8 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCeEEEEecccc
Q 002713 771 PDRVSDFCKRNKLQLIIRAHECV 793 (889)
Q Consensus 771 ~~~~~~fl~~~~l~~iiR~H~~~ 793 (889)
...+.+++++.+++++|-||.-.
T Consensus 190 ~~~l~~l~~~~~v~~vl~GH~H~ 212 (277)
T cd07378 190 VDRLLPLLKKYKVDAYLSGHDHN 212 (277)
T ss_pred HHHHHHHHHHcCCCEEEeCCccc
Confidence 46778899999999999999865
No 165
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=84.45 E-value=58 Score=38.96 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=71.0
Q ss_pred EEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCC-----ccccEEEEECCcEEEEEecCCCCccc
Q 002713 104 AAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP-----RYGHVMDLVSQRYLVSVSGNDGKRVL 178 (889)
Q Consensus 104 aa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~-----R~~hs~~~~~~~~lyv~GG~~~~~~l 178 (889)
+-+++++.||+.... ..++++|..+.+..|+.-........+ ...... .+.++++|+ +..+
T Consensus 64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~-av~~~~v~v-~t~d----- 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGV-ALYDGKVFF-GTLD----- 129 (527)
T ss_pred CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccc-eEECCEEEE-EcCC-----
Confidence 345678899986552 359999999988889864221100000 111122 333446765 3322
Q ss_pred CcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccC-CeeEEEeCC
Q 002713 179 SDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN-GQWEWTLAP 252 (889)
Q Consensus 179 ndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~-~~W~w~~~~ 252 (889)
..++++|.++....|+.-... ........++-++.++++|+.... .+......++.|+..+. ..|++...+
T Consensus 130 g~l~ALDa~TGk~~W~~~~~~--~~~~~~~tssP~v~~g~Vivg~~~-~~~~~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNGD--YKAGYTITAAPLVVKGKVITGISG-GEFGVRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred CEEEEEECCCCCEEeeccccc--ccccccccCCcEEECCEEEEeecc-cccCCCcEEEEEECCCCceeEeccCcC
Confidence 368999999988889864321 111111112234457777664321 11112345788887643 256655554
No 166
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=83.81 E-value=1.5 Score=47.94 Aligned_cols=66 Identities=26% Similarity=0.351 Sum_probs=40.7
Q ss_pred CeEEEecCCCCHHH--------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-h-----HHHHHHHHHHh
Q 002713 586 PVKVFGDLHGQFGD--------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-S-----LETITLLLALK 645 (889)
Q Consensus 586 ~i~vvGDiHG~~~~--------------l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~-s-----~evl~ll~~lk 645 (889)
.|+.+.|+||++.. |..+++........ .-+|..||+++..+. + -.++.++-++.
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g 76 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPN-----SLFVSAGDLIGASPFESALLQDEPTIEALNAMG 76 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCC-----eEEEeCCcccccccchhhcccCCcHHHHHHhhC
Confidence 47889999998653 55566655432111 156779999976653 2 24455555553
Q ss_pred hcCCCcEEEecCCCcc
Q 002713 646 IEYPENVHLIRGNHEA 661 (889)
Q Consensus 646 ~~~p~~v~llrGNHE~ 661 (889)
. . .+..||||.
T Consensus 77 ~----D-a~t~GNHef 87 (288)
T cd07412 77 V----D-ASAVGNHEF 87 (288)
T ss_pred C----e-eeeeccccc
Confidence 2 2 355699996
No 167
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=83.62 E-value=1.1 Score=52.83 Aligned_cols=69 Identities=26% Similarity=0.282 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhcCCe----EEEEeccccc--cceE-EecCCeEEEE---ecccccCCCCCCeEEEEEEcCCceEEeEEec
Q 002713 770 GPDRVSDFCKRNKLQ----LIIRAHECVM--DGFE-RFAQGQLITL---FSATNYCGTANNAGAILVVGRGLVVVPKLIH 839 (889)
Q Consensus 770 g~~~~~~fl~~~~l~----~iiR~H~~~~--~G~~-~~~~~~~itv---fSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~ 839 (889)
.++..++.|+..||+ .||-||.+|. +|=. .-++||++.| ||.. |..+.+=+|=-|+. +...+.....+
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~TGIAGYTLiy-NS~gl~L~~H~ 584 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTTGIAGYTLIY-NSYGLQLVAHQ 584 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccccCccceEEEe-cCCcceeccCC
Confidence 677888999999999 9999999996 5643 4689999999 7765 65555545544444 33333333444
Q ss_pred c
Q 002713 840 P 840 (889)
Q Consensus 840 ~ 840 (889)
|
T Consensus 585 p 585 (640)
T PF06874_consen 585 P 585 (640)
T ss_pred C
Confidence 4
No 168
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=83.11 E-value=2.1 Score=46.04 Aligned_cols=65 Identities=22% Similarity=0.205 Sum_probs=38.2
Q ss_pred CeEEEecCCCCHH----------HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-----HHHHHHHHHHhhcCCC
Q 002713 586 PVKVFGDLHGQFG----------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPE 650 (889)
Q Consensus 586 ~i~vvGDiHG~~~----------~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s-----~evl~ll~~lk~~~p~ 650 (889)
.|.-+.|+||++. .|..+++...-.+. .-+|..||+++..+.+ ..++..|-.+. -
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~------~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~ 71 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDN------DLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----Y 71 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCC------EEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----C
Confidence 4678999999853 45555655532211 2567799999875532 22333333332 2
Q ss_pred cEEEecCCCcc
Q 002713 651 NVHLIRGNHEA 661 (889)
Q Consensus 651 ~v~llrGNHE~ 661 (889)
.+ +..||||.
T Consensus 72 d~-~~~GNHef 81 (257)
T cd07408 72 DA-VTPGNHEF 81 (257)
T ss_pred cE-Eccccccc
Confidence 33 45699996
No 169
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=80.23 E-value=82 Score=33.73 Aligned_cols=159 Identities=13% Similarity=0.078 Sum_probs=77.7
Q ss_pred CcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceE-EEEEeecCCC---CCCcccc---EEEEECCcEEEEE
Q 002713 97 PSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFK-WHRVVVQGQG---PGPRYGH---VMDLVSQRYLVSV 169 (889)
Q Consensus 97 P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~-W~~v~~~g~~---p~~R~~h---s~~~~~~~~lyv~ 169 (889)
|-+-.+-+.+++++.+|..=. .++.+.+||+.+.... |..++..+-. |-...++ -.++-.+|.-+|+
T Consensus 66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY 139 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY 139 (250)
T ss_pred eceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence 344556666778887777644 3578999999998766 6666332221 1111122 3334455544444
Q ss_pred ecCCCCcccCcEEEEecCCCC--ceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeE
Q 002713 170 SGNDGKRVLSDAWALDTAQKP--YVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWE 247 (889)
Q Consensus 170 GG~~~~~~lndv~~yd~~t~~--~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~ 247 (889)
.-.+..+ .-.+-++|+.+-. -+|..-- +....+ .|.+ .-|.||+.-..+... ..=.+.||..+. +
T Consensus 140 at~~~~g-~ivvskld~~tL~v~~tw~T~~-----~k~~~~-naFm-vCGvLY~~~s~~~~~--~~I~yafDt~t~---~ 206 (250)
T PF02191_consen 140 ATEDNNG-NIVVSKLDPETLSVEQTWNTSY-----PKRSAG-NAFM-VCGVLYATDSYDTRD--TEIFYAFDTYTG---K 206 (250)
T ss_pred ecCCCCC-cEEEEeeCcccCceEEEEEecc-----Cchhhc-ceee-EeeEEEEEEECCCCC--cEEEEEEECCCC---c
Confidence 4333221 1123345555421 1565321 122222 2332 334788877654443 223467777754 2
Q ss_pred EEeCCCCCCCccc-eeEEEEE---CCEEEEEc
Q 002713 248 WTLAPGVAPSPRY-QHAAVFV---GARLHVTG 275 (889)
Q Consensus 248 w~~~~~~~p~~R~-~hs~~~~---~~~lyV~G 275 (889)
-.. ....-..++ .+++..+ +.+||+.-
T Consensus 207 ~~~-~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 207 EED-VSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eec-eeeeeccccCceEeeeECCCCCeEEEEE
Confidence 222 222122233 3344444 56799884
No 170
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=80.08 E-value=3.6 Score=44.39 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=20.7
Q ss_pred EEEeccccCCCCChH-----HHHHHHHHHhhcCCCcEEEecCCCcc
Q 002713 621 YLFLGDYVDRGQHSL-----ETITLLLALKIEYPENVHLIRGNHEA 661 (889)
Q Consensus 621 ~vfLGD~vDRG~~s~-----evl~ll~~lk~~~p~~v~llrGNHE~ 661 (889)
+|..||+++..+.+. .++.++-++ + --.+. ||||.
T Consensus 55 ~l~~GD~~~gs~~~~~~~g~~~~~~l~~~----g-~da~~-GNHef 94 (264)
T cd07411 55 LLDGGDTWQGSGEALYTRGQAMVDALNAL----G-VDAMV-GHWEF 94 (264)
T ss_pred EEeCCCccCCChHHhhcCChhHHHHHHhh----C-CeEEe-ccccc
Confidence 455999998775432 334444443 2 23444 99996
No 171
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=73.83 E-value=6.4 Score=43.12 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=29.0
Q ss_pred eEEEeccccCCCCChH--H------HHHHHHHHhhcCCC-cEEEecCCCccchh
Q 002713 620 DYLFLGDYVDRGQHSL--E------TITLLLALKIEYPE-NVHLIRGNHEAADI 664 (889)
Q Consensus 620 ~~vfLGD~vDRG~~s~--e------vl~ll~~lk~~~p~-~v~llrGNHE~~~~ 664 (889)
-+|+.||+|+.+.... + .-.+...++..+|. .|+.+.||||....
T Consensus 71 fii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~ 124 (296)
T cd00842 71 FILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPV 124 (296)
T ss_pred EEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcc
Confidence 5788999998876421 1 22233334444443 59999999998644
No 172
>PRK13684 Ycf48-like protein; Provisional
Probab=73.02 E-value=1.6e+02 Score=32.85 Aligned_cols=175 Identities=17% Similarity=0.300 Sum_probs=79.4
Q ss_pred CcEEEecCCCCCCcccCccEEEEEC-CEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECC
Q 002713 85 RKWTRIRPAGEPPSPRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQ 163 (889)
Q Consensus 85 ~~W~~l~~~g~~P~~R~~haa~~~~-~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~ 163 (889)
.+|+++......| ........++ +.+++.|..+ .+++ ....--+|+.+.. +..-.-+.+....+
T Consensus 119 ~tW~~~~~~~~~~--~~~~~i~~~~~~~~~~~g~~G-------~i~~--S~DgG~tW~~~~~----~~~g~~~~i~~~~~ 183 (334)
T PRK13684 119 KNWTRIPLSEKLP--GSPYLITALGPGTAEMATNVG-------AIYR--TTDGGKNWEALVE----DAAGVVRNLRRSPD 183 (334)
T ss_pred CCCeEccCCcCCC--CCceEEEEECCCcceeeeccc-------eEEE--ECCCCCCceeCcC----CCcceEEEEEECCC
Confidence 5899885321122 1222333343 3456655432 2333 2222234988732 22223444555566
Q ss_pred cEEEEEecCCCCcccCcEEEE-ecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEe-cc
Q 002713 164 RYLVSVSGNDGKRVLSDAWAL-DTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLL-MH 241 (889)
Q Consensus 164 ~~lyv~GG~~~~~~lndv~~y-d~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~-~~ 241 (889)
+.+++.|.. + .++.- |-... +|+.+... ..+.........++.+++.|.. +. ..+. ..
T Consensus 184 g~~v~~g~~-G-----~i~~s~~~gg~--tW~~~~~~----~~~~l~~i~~~~~g~~~~vg~~---G~-----~~~~s~d 243 (334)
T PRK13684 184 GKYVAVSSR-G-----NFYSTWEPGQT--AWTPHQRN----SSRRLQSMGFQPDGNLWMLARG---GQ-----IRFNDPD 243 (334)
T ss_pred CeEEEEeCC-c-----eEEEEcCCCCC--eEEEeeCC----CcccceeeeEcCCCCEEEEecC---CE-----EEEccCC
Confidence 555555432 2 22222 22333 79887542 3333444455567788887742 11 2221 22
Q ss_pred cCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccC
Q 002713 242 RNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 305 (889)
Q Consensus 242 ~~~~W~w~~~~~~~p~~R~~hs~~~~-~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~ 305 (889)
....|+-...+... ....-+++++. ++.++++|.. ..++.-.-...+|+.+..
T Consensus 244 ~G~sW~~~~~~~~~-~~~~l~~v~~~~~~~~~~~G~~----------G~v~~S~d~G~tW~~~~~ 297 (334)
T PRK13684 244 DLESWSKPIIPEIT-NGYGYLDLAYRTPGEIWAGGGN----------GTLLVSKDGGKTWEKDPV 297 (334)
T ss_pred CCCccccccCCccc-cccceeeEEEcCCCCEEEEcCC----------CeEEEeCCCCCCCeECCc
Confidence 22345533222110 11122333333 6678888752 113333334578998754
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=72.75 E-value=1.1e+02 Score=32.47 Aligned_cols=158 Identities=20% Similarity=0.270 Sum_probs=78.9
Q ss_pred CcEEEecCCCC--CCcccCcc-EEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEE
Q 002713 85 RKWTRIRPAGE--PPSPRAAH-AAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV 161 (889)
Q Consensus 85 ~~W~~l~~~g~--~P~~R~~h-aa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~ 161 (889)
..|+...++.. .+.|-... ...--.+.|++.||. ..+|+.|+++.+ -++.. .-..-|-|+.+..
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~--i~r~~----rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGR--IQREY----RGHTDYVHSVVGR 165 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCE--EEEEE----cCCcceeeeeeec
Confidence 45766665532 23332222 112235789999984 348999999976 33331 1123466677664
Q ss_pred CCcEEEEEecCCCCcccCcEEEEecCCCCceEEEc-cCCCCCCCcc--cce-EEEEecCCEEEEEccCCCCCCcccceEE
Q 002713 162 SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL-NPEGDRPSAR--MYA-TASARSDGMFLLCGGRDASGAPLADAYG 237 (889)
Q Consensus 162 ~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v-~~~~~~P~~r--~~~-~a~~~~~~~l~v~GG~~~~~~~~~dv~~ 237 (889)
...-=++-|+.|+ .+-.+|+++. +-.++ .+-...-.-| .+. -++...+...+|+||- .--.+|-
T Consensus 166 ~~~~qilsG~EDG-----tvRvWd~kt~--k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-----p~lslwh 233 (325)
T KOG0649|consen 166 NANGQILSGAEDG-----TVRVWDTKTQ--KHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-----PKLSLWH 233 (325)
T ss_pred ccCcceeecCCCc-----cEEEEecccc--ceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-----CceeEEe
Confidence 4334455677776 4566788776 33332 2211111111 222 1333445556777763 2234565
Q ss_pred EecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEc
Q 002713 238 LLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTG 275 (889)
Q Consensus 238 l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~G 275 (889)
+..... + .+ .|.|--.|-+.++++.+++.|
T Consensus 234 Lrsse~---t--~v---fpipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 234 LRSSES---T--CV---FPIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred ccCCCc---e--EE---EecccceeEeeeecceEEEec
Confidence 544422 1 11 133333444556666666655
No 174
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.73 E-value=15 Score=35.55 Aligned_cols=101 Identities=28% Similarity=0.377 Sum_probs=66.4
Q ss_pred eEEEecCCC--CHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchh
Q 002713 587 VKVFGDLHG--QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 664 (889)
Q Consensus 587 i~vvGDiHG--~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 664 (889)
+.++||+|= ...+|-.-|++.=.|..- . .++++|++. |.|++.+|..+- ..++++||--|..
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki---~--hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~-- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKI---Q--HILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN-- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCce---e--EEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc--
Confidence 578999985 334555556655555432 1 789999965 779999998875 6899999977653
Q ss_pred hhhcCChHHHHHHhCCCCchhhhhhhhhhcCCCceEEEE--c-CeEEEecCCCCCCCcCHHHhhcccCCccc
Q 002713 665 NALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI--E-KKIICMHGGIGRSIHSVEQIEKLERPITM 733 (889)
Q Consensus 665 ~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i--~-~~i~~vHgGi~~~~~~~~~i~~~~rp~~~ 733 (889)
.+| |..-++ + =||-||||-.---..+.+.+.-+.|-+++
T Consensus 67 -----------~~y-------------------P~~kvvtvGqfkIG~chGhqViP~gd~~sL~~LaRqldv 108 (183)
T KOG3325|consen 67 -----------LKY-------------------PENKVVTVGQFKIGLCHGHQVIPWGDPESLALLARQLDV 108 (183)
T ss_pred -----------ccC-------------------CccceEEeccEEEEeecCcEeecCCCHHHHHHHHHhcCC
Confidence 223 222222 2 27999999664334566667667776543
No 175
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=71.60 E-value=1.4e+02 Score=37.40 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=69.4
Q ss_pred cEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCcccc----EEE-----------------EE
Q 002713 103 HAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGH----VMD-----------------LV 161 (889)
Q Consensus 103 haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~h----s~~-----------------~~ 161 (889)
.+-+++++.||+.... +.++.+|..+.+..|+.-.... ... ...| ..+ ..
T Consensus 188 ~TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~~~~-~~~-~~~~~~cRGvay~~~p~~~~~~~~~~~p~~ 258 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDPKLK-TEA-GRQHQTCRGVSYYDAPAAAAGPAAPAAPAD 258 (764)
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCC-ccc-ccccccccceEEecCCcccccccccccccc
Confidence 3456779999998552 4689999998888897643211 100 0001 000 11
Q ss_pred CCcEEEEEecCCCCcccCcEEEEecCCCCceEEEcc--------CCCCCCCccc-ceEEEEecCCEEEEEccCCCCC---
Q 002713 162 SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLN--------PEGDRPSARM-YATASARSDGMFLLCGGRDASG--- 229 (889)
Q Consensus 162 ~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~--------~~~~~P~~r~-~~~a~~~~~~~l~v~GG~~~~~--- 229 (889)
.++++| ++..+ ..++.+|.++....|..-. .++..+.... ..++-++.++++|+ |+...++
T Consensus 259 ~~~rV~-~~T~D-----g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~ 331 (764)
T TIGR03074 259 CARRII-LPTSD-----ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYST 331 (764)
T ss_pred cCCEEE-EecCC-----CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-Eecccccccc
Confidence 222444 34333 3578888888777786421 1222222211 12333556776666 5432221
Q ss_pred -CcccceEEEecccC-CeeEEEe
Q 002713 230 -APLADAYGLLMHRN-GQWEWTL 250 (889)
Q Consensus 230 -~~~~dv~~l~~~~~-~~W~w~~ 250 (889)
.....+..||..+. ..|.|..
T Consensus 332 ~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 332 DEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred cCCCcEEEEEECCCCcEeeEEec
Confidence 22445788887643 2566654
No 176
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=70.82 E-value=1.2e+02 Score=34.54 Aligned_cols=224 Identities=12% Similarity=0.059 Sum_probs=101.7
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEE-cCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCC
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQ-GGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~-~~~Iyv~-GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~ 151 (889)
...+|.+|+.+.+=++|+.... ....+ ++.+- +..+|.+ .+ ..++.+|+.+.+ =+.+. ..|.
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g--~~~~g-~~~s~~~~~~~Yv~~~--------~~l~~vdL~T~e--~~~vy---~~p~ 122 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPG--DNTFG-GFLSPDDRALYYVKNG--------RSLRRVDLDTLE--ERVVY---EVPD 122 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS---B-TTT--EE-TTSSEEEEEETT--------TEEEEEETTT----EEEEE---E--T
T ss_pred CcceEEEEcccCEEEECccCCC--CCccc-eEEecCCCeEEEEECC--------CeEEEEECCcCc--EEEEE---ECCc
Confidence 4679999999999999974321 12222 22222 3465544 33 358889988844 22332 1222
Q ss_pred Ccccc-EEEEECCcEEEEEecC----CC--------------CcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEE
Q 002713 152 PRYGH-VMDLVSQRYLVSVSGN----DG--------------KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATAS 212 (889)
Q Consensus 152 ~R~~h-s~~~~~~~~lyv~GG~----~~--------------~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~ 212 (889)
.=.+. +.++-.++..+ +|=. +. ......+...|+.++ +...+-.. ....+|.-.
T Consensus 123 ~~~g~gt~v~n~d~t~~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG--~~~~v~~~----~~wlgH~~f 195 (386)
T PF14583_consen 123 DWKGYGTWVANSDCTKL-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG--ERKVVFED----TDWLGHVQF 195 (386)
T ss_dssp TEEEEEEEEE-TTSSEE-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEE----SS-EEEEEE
T ss_pred ccccccceeeCCCccEE-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC--ceeEEEec----CccccCccc
Confidence 22222 22222333332 2211 00 123456777888887 66666433 223356555
Q ss_pred EecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEE
Q 002713 213 ARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAV 292 (889)
Q Consensus 213 ~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~ 292 (889)
.-.+..++.|.-...-...-.-+|.++....+.|. +....+.-.++|--...++..+.+=++...+. .--+..
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~---v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~----~~~i~~ 268 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKK---VHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQ----DFWIAG 268 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EE---SS---TTEEEEEEEE-TTSS-EEEEEEETTT------EEEEE
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCccee---eecCCCCcccccccccCCCCEEEEEeecCCCC----ceEEEe
Confidence 55566666663222222223368999977663333 33223455666666665554333322222221 234888
Q ss_pred EECCCCeEEeccCCccccCCCCCCCCCCCccCcccccceEEEEECCEEEEEcCCC
Q 002713 293 LDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK 347 (889)
Q Consensus 293 yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~h~~~~v~~~lyv~GG~~ 347 (889)
||+.|..=+.+..+ +++.|-++..+++|++--|.+
T Consensus 269 ~d~~t~~~~~~~~~--------------------p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 269 YDPDTGERRRLMEM--------------------PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp E-TTT--EEEEEEE---------------------SEEEEEE-TTSSEEEEEE--
T ss_pred eCCCCCCceEEEeC--------------------CceeeeEEcCCCCEEEecCCC
Confidence 99988753333333 678899999999999877754
No 177
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=70.01 E-value=6.5 Score=51.69 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=39.0
Q ss_pred CeEEEecCCCCHH---HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-----HHHHHHHHHHhhcCCCcEEEecC
Q 002713 586 PVKVFGDLHGQFG---DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRG 657 (889)
Q Consensus 586 ~i~vvGDiHG~~~---~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s-----~evl~ll~~lk~~~p~~v~llrG 657 (889)
.|+.+.|+||.+. .+..+++...-...+ .-++..||+++..+.+ ..++.+|-++ +--++..|
T Consensus 662 ~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~l-----g~d~~~~G 731 (1163)
T PRK09419 662 TILHTNDFHGHLDGAAKRVTKIKEVKEENPN-----TILVDAGDVYQGSLYSNLLKGLPVLKMMKEM-----GYDASTFG 731 (1163)
T ss_pred EEEEEeecccCCCCHHHHHHHHHHHHhhCCC-----eEEEecCCCCCCcchhhhcCChHHHHHHhCc-----CCCEEEec
Confidence 4888999999863 344444443221111 1234479999877643 2344444443 23356899
Q ss_pred CCcc
Q 002713 658 NHEA 661 (889)
Q Consensus 658 NHE~ 661 (889)
|||.
T Consensus 732 NHEf 735 (1163)
T PRK09419 732 NHEF 735 (1163)
T ss_pred cccc
Confidence 9996
No 178
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=69.46 E-value=1.4e+02 Score=30.50 Aligned_cols=152 Identities=12% Similarity=0.081 Sum_probs=75.2
Q ss_pred EEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeec-CCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEE
Q 002713 105 AAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ-GQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWA 183 (889)
Q Consensus 105 a~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~-g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~ 183 (889)
+....+.+|+|-|. .+|+++.......-..+... +..| .....+.....++.+|+|-|. ..|+
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p-~~IDAa~~~~~~~~~yfFkg~-------~yw~ 75 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLP-SPVDAAFERPDTGKIYFFKGD-------KYWV 75 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCC-CCccEEEEECCCCEEEEECCC-------EEEE
Confidence 34456889999772 47888765211011112110 1112 122222222233789998764 5778
Q ss_pred EecCCCCceE---EEccCCCCCCCcccceEEEEec-CCEEEEEccCCCCCCcccceEEEecccCC---------eeEEEe
Q 002713 184 LDTAQKPYVW---QRLNPEGDRPSARMYATASARS-DGMFLLCGGRDASGAPLADAYGLLMHRNG---------QWEWTL 250 (889)
Q Consensus 184 yd~~t~~~~W---~~v~~~~~~P~~r~~~~a~~~~-~~~l~v~GG~~~~~~~~~dv~~l~~~~~~---------~W~w~~ 250 (889)
|+..+. .+ ..+...+.++.+..-.+|.... ++++|+|.|. ..|.|+..... .-.|.
T Consensus 76 ~~~~~~--~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~~v~~~yP~~i~~~w~- 144 (194)
T cd00094 76 YTGKNL--EPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQKMDPGYPKLIETDFP- 144 (194)
T ss_pred EcCccc--ccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCccccCCCCcchhhcCC-
Confidence 876542 12 1121112222122234555554 7899999873 35666643220 00121
Q ss_pred CCCCCCCccceeEEEEE-CCEEEEEcCCCCCCCCccCCCcEEEEECCCCe
Q 002713 251 APGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (889)
Q Consensus 251 ~~~~~p~~R~~hs~~~~-~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (889)
+. +..-.++... ++++|+|-| +.+|.||..+.+
T Consensus 145 --g~---p~~idaa~~~~~~~~yfF~g-----------~~y~~~d~~~~~ 178 (194)
T cd00094 145 --GV---PDKVDAAFRWLDGYYYFFKG-----------DQYWRFDPRSKE 178 (194)
T ss_pred --Cc---CCCcceeEEeCCCcEEEEEC-----------CEEEEEeCccce
Confidence 11 2112233334 488999977 358999988765
No 179
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.23 E-value=1.8e+02 Score=31.81 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=55.8
Q ss_pred CCcEEEEECCCCc----EEEecCCCCCCcccCcc-EEEEE---CCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEee
Q 002713 74 TNSVHLYDVLTRK----WTRIRPAGEPPSPRAAH-AAAAV---GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVV 145 (889)
Q Consensus 74 ~ndv~~yD~~t~~----W~~l~~~g~~P~~R~~h-aa~~~---~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~ 145 (889)
.+-++.||..+++ |++-- .-|..=++- +=..+ ++.+++.=+. +...-.+|.+|.++... +.+
T Consensus 77 YSHVH~yd~e~~~VrLLWkesi---h~~~~WaGEVSdIlYdP~~D~LLlAR~D---Gh~nLGvy~ldr~~g~~--~~L-- 146 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESI---HDKTKWAGEVSDILYDPYEDRLLLARAD---GHANLGVYSLDRRTGKA--EKL-- 146 (339)
T ss_pred cceEEEEEcCCCeEEEEEeccc---CCccccccchhheeeCCCcCEEEEEecC---CcceeeeEEEcccCCce--eec--
Confidence 4569999998875 65322 111111111 11222 4677777553 34455689999988663 333
Q ss_pred cCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceE
Q 002713 146 QGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVW 193 (889)
Q Consensus 146 ~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W 193 (889)
..-|... .+.+.+..+ ||=.+...-+..+.+||+.++ +|
T Consensus 147 -~~~ps~K----G~~~~D~a~--F~i~~~~~g~~~i~~~Dli~~--~~ 185 (339)
T PF09910_consen 147 -SSNPSLK----GTLVHDYAC--FGINNFHKGVSGIHCLDLISG--KW 185 (339)
T ss_pred -cCCCCcC----ceEeeeeEE--EeccccccCCceEEEEEccCC--eE
Confidence 1222221 123333222 333444556789999999999 78
No 180
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=69.07 E-value=90 Score=29.38 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=46.5
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEE-ccCCceEEEEEee
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLD-LTNDKFKWHRVVV 145 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD-~~t~~~~W~~v~~ 145 (889)
.+.+.+||+.+.+|+.+...............+.++++|-++.-........=++|+++ ..+ -+|.+...
T Consensus 19 ~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k--~~Wsk~~~ 89 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK--QEWSKKHI 89 (129)
T ss_pred CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc--ceEEEEEE
Confidence 57899999999999988742122245666777888888887755322222346789885 444 35876643
No 181
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=68.85 E-value=10 Score=41.29 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=16.9
Q ss_pred eCHHHHHHHHHhc-CCeEEEEecccc
Q 002713 769 FGPDRVSDFCKRN-KLQLIIRAHECV 793 (889)
Q Consensus 769 fg~~~~~~fl~~~-~l~~iiR~H~~~ 793 (889)
.|.+.-.+++++. ++++||=||+-+
T Consensus 192 ~G~~~d~~la~~~~giD~IiggH~H~ 217 (281)
T cd07409 192 SGYEVDKEIARKVPGVDVIVGGHSHT 217 (281)
T ss_pred cCchhHHHHHHcCCCCcEEEeCCcCc
Confidence 3444445566664 899999998655
No 182
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=68.79 E-value=96 Score=29.18 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=52.3
Q ss_pred EEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCC-cccCcEEEE
Q 002713 106 AAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGK-RVLSDAWAL 184 (889)
Q Consensus 106 ~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~-~~lndv~~y 184 (889)
+++++-+|...-. ......-+..||+.+++ |+.+...............+.+++ +|-++.-.... ...-++|++
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~--f~~i~~P~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~~~~~~iWvL 76 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEK--FRFIKLPEDPYSSDCSSTLIEYKG-KLALVSYNDQGEPDSIDIWVL 76 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCce--EEEEEeeeeeccccCccEEEEeCC-eEEEEEecCCCCcceEEEEEe
Confidence 4677777777664 33445778899999977 766633212334455556656665 55554433322 234688988
Q ss_pred e-cCCCCceEEEccC
Q 002713 185 D-TAQKPYVWQRLNP 198 (889)
Q Consensus 185 d-~~t~~~~W~~v~~ 198 (889)
+ ..+. .|.+...
T Consensus 77 eD~~k~--~Wsk~~~ 89 (129)
T PF08268_consen 77 EDYEKQ--EWSKKHI 89 (129)
T ss_pred eccccc--eEEEEEE
Confidence 4 5556 8987744
No 183
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=68.55 E-value=1.2e+02 Score=30.80 Aligned_cols=107 Identities=13% Similarity=0.173 Sum_probs=54.6
Q ss_pred CEEEEEcCcCCCCCccCcEEEEEccCCceEE-EEEeecCCCCC-CccccEEEEECCcEEEEEecCCCCcccCcEEEEecC
Q 002713 110 TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKW-HRVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTA 187 (889)
Q Consensus 110 ~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W-~~v~~~g~~p~-~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~ 187 (889)
+++|+|-|. ..|+|+..+..... +.+..-+-++. .....+...-.++.+|+|.| +..|+||..
T Consensus 63 ~~~yfFkg~--------~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~ 127 (194)
T cd00094 63 GKIYFFKGD--------KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEK 127 (194)
T ss_pred CEEEEECCC--------EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCC
Confidence 789999773 47888876411001 11111011111 22233332223679999988 357888876
Q ss_pred CCCceEEE-----ccCC-CCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccC
Q 002713 188 QKPYVWQR-----LNPE-GDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN 243 (889)
Q Consensus 188 t~~~~W~~-----v~~~-~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~ 243 (889)
++ +... +... ...| ..-.+|....++.+|+|-|. ..|.|+....
T Consensus 128 ~~--~v~~~yP~~i~~~w~g~p--~~idaa~~~~~~~~yfF~g~--------~y~~~d~~~~ 177 (194)
T cd00094 128 TQ--KMDPGYPKLIETDFPGVP--DKVDAAFRWLDGYYYFFKGD--------QYWRFDPRSK 177 (194)
T ss_pred Cc--cccCCCCcchhhcCCCcC--CCcceeEEeCCCcEEEEECC--------EEEEEeCccc
Confidence 54 2210 1100 1112 22345555565888888773 4678877643
No 184
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=67.49 E-value=72 Score=36.55 Aligned_cols=158 Identities=13% Similarity=0.163 Sum_probs=81.1
Q ss_pred CEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcE-EEEEecCCCCcccCcEEEEecCC
Q 002713 110 TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRY-LVSVSGNDGKRVLSDAWALDTAQ 188 (889)
Q Consensus 110 ~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~-lyv~GG~~~~~~lndv~~yd~~t 188 (889)
--+.+.+|++. .-.+|..|-.++. .-+.+.. -..|.. +++...++. .++++|+. .-+|.||+++
T Consensus 225 ~plllvaG~d~----~lrifqvDGk~N~-~lqS~~l-~~fPi~----~a~f~p~G~~~i~~s~rr-----ky~ysyDle~ 289 (514)
T KOG2055|consen 225 APLLLVAGLDG----TLRIFQVDGKVNP-KLQSIHL-EKFPIQ----KAEFAPNGHSVIFTSGRR-----KYLYSYDLET 289 (514)
T ss_pred CceEEEecCCC----cEEEEEecCccCh-hheeeee-ccCccc----eeeecCCCceEEEecccc-----eEEEEeeccc
Confidence 36888888742 2345556655543 1111111 111211 222333444 66666654 3468899999
Q ss_pred CCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCcccee-EEEEE
Q 002713 189 KPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQH-AAVFV 267 (889)
Q Consensus 189 ~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~h-s~~~~ 267 (889)
. +-+++.++...+. +..+...+..++.++++-|..+- ++.+...+. +|...-.. .++..- +...-
T Consensus 290 a--k~~k~~~~~g~e~-~~~e~FeVShd~~fia~~G~~G~------I~lLhakT~---eli~s~Ki--eG~v~~~~fsSd 355 (514)
T KOG2055|consen 290 A--KVTKLKPPYGVEE-KSMERFEVSHDSNFIAIAGNNGH------IHLLHAKTK---ELITSFKI--EGVVSDFTFSSD 355 (514)
T ss_pred c--ccccccCCCCccc-chhheeEecCCCCeEEEcccCce------EEeehhhhh---hhhheeee--ccEEeeEEEecC
Confidence 8 7788876655442 22333344566667777775332 444444433 33322211 122111 11223
Q ss_pred CCEEEEEcCCCCCCCCccCCCcEEEEECCCC----eEEeccCC
Q 002713 268 GARLHVTGGALRGGRAIEGEAAVAVLDTAAG----VWLDRNGL 306 (889)
Q Consensus 268 ~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~----~W~~v~~~ 306 (889)
+..|++.||+ ..||++|+..+ .|..-..+
T Consensus 356 sk~l~~~~~~----------GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 356 SKELLASGGT----------GEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred CcEEEEEcCC----------ceEEEEecCCcceEEEEeecCcc
Confidence 5678888884 35999999876 45554444
No 185
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=64.90 E-value=3.7e+02 Score=33.81 Aligned_cols=70 Identities=23% Similarity=0.189 Sum_probs=38.4
Q ss_pred CcEEEEEccCCceEEEEE-------ee-cCCCCCCcccc-EEEEECCcEEEEEecC--CCC---cccCcEEEEecCCCCc
Q 002713 126 DDLYVLDLTNDKFKWHRV-------VV-QGQGPGPRYGH-VMDLVSQRYLVSVSGN--DGK---RVLSDAWALDTAQKPY 191 (889)
Q Consensus 126 ~dv~~yD~~t~~~~W~~v-------~~-~g~~p~~R~~h-s~~~~~~~~lyv~GG~--~~~---~~lndv~~yd~~t~~~ 191 (889)
..++.+|..+.+.+|.-- .. .+..+..-+.. +.-++.++.+|+ |+. ++. .....+..||.+|...
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCCCcEEEEEECCCCcE
Confidence 348889999888888531 10 12222222222 222334446665 443 211 2346688899999886
Q ss_pred eEEEc
Q 002713 192 VWQRL 196 (889)
Q Consensus 192 ~W~~v 196 (889)
.|..-
T Consensus 349 ~W~~~ 353 (764)
T TIGR03074 349 VWAWD 353 (764)
T ss_pred eeEEe
Confidence 77653
No 186
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=64.21 E-value=2e+02 Score=30.39 Aligned_cols=93 Identities=23% Similarity=0.381 Sum_probs=46.9
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCC
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~--~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~ 151 (889)
.+.+++||+.+++-...-.... .++ +++.. +..+|+.++. .+.+++||+.+.+ .......+ ..
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~--~~~---~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~--~~~~~~~~--~~ 74 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQ--RPR---GITLSKDGKLLYVCASD------SDTIQVIDLATGE--VIGTLPSG--PD 74 (300)
T ss_pred CCEEEEEECCCCceEEEEECCC--CCC---ceEECCCCCEEEEEECC------CCeEEEEECCCCc--EEEeccCC--CC
Confidence 3578999998765433221111 122 22222 2356666652 2458899998754 32221111 11
Q ss_pred CccccEEEEE-CCcEEEEEecCCCCcccCcEEEEecCCC
Q 002713 152 PRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (889)
Q Consensus 152 ~R~~hs~~~~-~~~~lyv~GG~~~~~~lndv~~yd~~t~ 189 (889)
+ ..++.. +++.+|+.++.+ +.+..||+.+.
T Consensus 75 ~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~ 105 (300)
T TIGR03866 75 P---ELFALHPNGKILYIANEDD-----NLVTVIDIETR 105 (300)
T ss_pred c---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCC
Confidence 1 223333 333566554433 36888999875
No 187
>PRK05137 tolB translocation protein TolB; Provisional
Probab=62.32 E-value=3e+02 Score=31.85 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=68.4
Q ss_pred CcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCc-EEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCC
Q 002713 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQR-YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (889)
Q Consensus 126 ~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~-~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~ 204 (889)
..+|++|+.+.. ...+. ..+..-. +.....++ .+++....++ ..++|.+|+.++ ....+.... .
T Consensus 226 ~~i~~~dl~~g~--~~~l~---~~~g~~~--~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~Lt~~~---~ 290 (435)
T PRK05137 226 PRVYLLDLETGQ--RELVG---NFPGMTF--APRFSPDGRKVVMSLSQGG---NTDIYTMDLRSG--TTTRLTDSP---A 290 (435)
T ss_pred CEEEEEECCCCc--EEEee---cCCCccc--CcEECCCCCEEEEEEecCC---CceEEEEECCCC--ceEEccCCC---C
Confidence 679999998855 45552 1222111 22223333 4444433332 357999999887 555554321 1
Q ss_pred cccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECC-EEEEEcCCCCCCCC
Q 002713 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGA-RLHVTGGALRGGRA 283 (889)
Q Consensus 205 ~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~-~lyV~GG~~~~~~~ 283 (889)
... ......+++.++|... ..+ ..++|.++.... ..+ .+... ..++......-++ .|++.. ... +
T Consensus 291 -~~~-~~~~spDG~~i~f~s~-~~g--~~~Iy~~d~~g~-~~~--~lt~~--~~~~~~~~~SpdG~~ia~~~-~~~-~-- 356 (435)
T PRK05137 291 -IDT-SPSYSPDGSQIVFESD-RSG--SPQLYVMNADGS-NPR--RISFG--GGRYSTPVWSPRGDLIAFTK-QGG-G-- 356 (435)
T ss_pred -ccC-ceeEcCCCCEEEEEEC-CCC--CCeEEEEECCCC-CeE--EeecC--CCcccCeEECCCCCEEEEEE-cCC-C--
Confidence 111 1222345544444321 111 246888876543 222 22111 1122222222344 444433 211 1
Q ss_pred ccCCCcEEEEECCCCeEEecc
Q 002713 284 IEGEAAVAVLDTAAGVWLDRN 304 (889)
Q Consensus 284 ~~~~~~v~~yD~~t~~W~~v~ 304 (889)
...++++|+.+...+.+.
T Consensus 357 ---~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 357 ---QFSIGVMKPDGSGERILT 374 (435)
T ss_pred ---ceEEEEEECCCCceEecc
Confidence 246899998777665543
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=62.15 E-value=2.5e+02 Score=30.88 Aligned_cols=98 Identities=12% Similarity=0.031 Sum_probs=45.1
Q ss_pred CcEEEEECC-CCcEEEecCCCCCCcccCccEEEEECC-EEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCC
Q 002713 75 NSVHLYDVL-TRKWTRIRPAGEPPSPRAAHAAAAVGT-MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (889)
Q Consensus 75 ndv~~yD~~-t~~W~~l~~~g~~P~~R~~haa~~~~~-~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~ 152 (889)
+.+..|+.. +.+++.+.... .+ ....|.+..-++ .+|+. .+. .+.+.+||+.++......+ ...+..
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~-~~-~~p~~i~~~~~g~~l~v~-~~~-----~~~v~v~~~~~~g~~~~~~---~~~~~~ 125 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESP-LP-GSPTHISTDHQGRFLFSA-SYN-----ANCVSVSPLDKDGIPVAPI---QIIEGL 125 (330)
T ss_pred CcEEEEEECCCCceEEeeeec-CC-CCceEEEECCCCCEEEEE-EcC-----CCeEEEEEECCCCCCCCce---eeccCC
Confidence 457777775 45666544221 11 111222222234 55555 332 3567788886432111122 111222
Q ss_pred ccccEEEEECC-cEEEEEecCCCCcccCcEEEEecCC
Q 002713 153 RYGHVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQ 188 (889)
Q Consensus 153 R~~hs~~~~~~-~~lyv~GG~~~~~~lndv~~yd~~t 188 (889)
..-|.+++..+ +.+|+..-. .+.++.||+.+
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~~ 157 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLK-----EDRIRLFTLSD 157 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCC-----CCEEEEEEECC
Confidence 33455544433 456654322 35688888876
No 189
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=62.02 E-value=15 Score=39.49 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-----hHHHHHHHHHHhhcCCCcEEEecCCCcc
Q 002713 595 GQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-----SLETITLLLALKIEYPENVHLIRGNHEA 661 (889)
Q Consensus 595 G~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~-----s~evl~ll~~lk~~~p~~v~llrGNHE~ 661 (889)
|-+..+..+++...-...+ .-+|..||+++..+. ...++..|-.+. --+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~~-----~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENPN-----TLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCCC-----EEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEeeccccc
Confidence 4466677777765432211 146679999987753 234555555543 23567899996
No 190
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=61.87 E-value=11 Score=41.52 Aligned_cols=72 Identities=25% Similarity=0.401 Sum_probs=43.9
Q ss_pred CeEEEecCCCCHHHHHHHH---HHhCCCCCCCCcceeeEEEeccccC-CCCC---hHHHHHHH---------HHHhhcCC
Q 002713 586 PVKVFGDLHGQFGDLMRLF---DEYGFPSTAGDITYIDYLFLGDYVD-RGQH---SLETITLL---------LALKIEYP 649 (889)
Q Consensus 586 ~i~vvGDiHG~~~~l~~il---~~~g~~~~~~~~~~~~~vfLGD~vD-RG~~---s~evl~ll---------~~lk~~~p 649 (889)
+|.|-|=-||+++.+-+-+ ++.|-.+-+ -+|++||+=- |... ++.|=--- +.=.++.|
T Consensus 2 rIaVqGCcHG~Ld~iYkti~~~ek~~~tkVD------LLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~AP 75 (456)
T KOG2863|consen 2 RIAVQGCCHGELDNIYKTISLIEKRGNTKVD------LLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAP 75 (456)
T ss_pred ceeeecccchhHHHHHHHHHHHHHcCCCCcc------EEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCc
Confidence 6889999999999887444 444433333 6888999852 3222 22221111 11133456
Q ss_pred CcEEEecCCCccch
Q 002713 650 ENVHLIRGNHEAAD 663 (889)
Q Consensus 650 ~~v~llrGNHE~~~ 663 (889)
=--++|=||||.++
T Consensus 76 VlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 76 VLTIFIGGNHEASN 89 (456)
T ss_pred eeEEEecCchHHHH
Confidence 55778999999875
No 191
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=61.30 E-value=13 Score=38.31 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=37.2
Q ss_pred eEEEecCCCC-----HHHHHHHHHHhC-CCCCCCCcceeeEEEeccccCCCCChH-------------HHHHHHHHHhhc
Q 002713 587 VKVFGDLHGQ-----FGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRGQHSL-------------ETITLLLALKIE 647 (889)
Q Consensus 587 i~vvGDiHG~-----~~~l~~il~~~g-~~~~~~~~~~~~~vfLGD~vDRG~~s~-------------evl~ll~~lk~~ 647 (889)
|++++|+|=. ++.|.++|+.+. -.... .+|++|+++|.-.... +-+..+..+...
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~------~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPD------VLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES 74 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTEC------EEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCc------EEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh
Confidence 5677777755 556666776555 22222 7999999999733221 111122222111
Q ss_pred C--CCcEEEecCCCccchh
Q 002713 648 Y--PENVHLIRGNHEAADI 664 (889)
Q Consensus 648 ~--p~~v~llrGNHE~~~~ 664 (889)
. --+|+++.|+||....
T Consensus 75 i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 75 ILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp CHCCSEEEEE--TTCTT-S
T ss_pred cccccEEEEeCCCcccccc
Confidence 1 2579999999997655
No 192
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=61.10 E-value=1.1e+02 Score=34.16 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=60.4
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCc---CCCCCccCcEEEEEccCCceEEEEEeecC-C
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGI---GPAGHSTDDLYVLDLTNDKFKWHRVVVQG-Q 148 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~-~~~Iyv~GG~---~~~~~~~~dv~~yD~~t~~~~W~~v~~~g-~ 148 (889)
+..+|+||..+++-.-.-. ..-.++.+..- +..+|+..=+ +..+...+-+.+||..+-+..++...+.+ .
T Consensus 16 ~~rv~viD~d~~k~lGmi~-----~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 16 TSRVYVIDADSGKLLGMID-----TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp SEEEEEEETTTTEEEEEEE-----EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred cceEEEEECCCCcEEEEee-----cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 5689999999887654332 23344433332 3466665421 23445678899999999777787664322 1
Q ss_pred CCCCccccEEEE-ECCcEEEEEecCCCCcccCcEEEEecCCC
Q 002713 149 GPGPRYGHVMDL-VSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (889)
Q Consensus 149 ~p~~R~~hs~~~-~~~~~lyv~GG~~~~~~lndv~~yd~~t~ 189 (889)
+...-+.+.... -+++.+||+-= .+...|-+.|+..+
T Consensus 91 ~~~~~~~~~~~ls~dgk~~~V~N~----TPa~SVtVVDl~~~ 128 (342)
T PF06433_consen 91 AQVVPYKNMFALSADGKFLYVQNF----TPATSVTVVDLAAK 128 (342)
T ss_dssp --BS--GGGEEE-TTSSEEEEEEE----SSSEEEEEEETTTT
T ss_pred heecccccceEEccCCcEEEEEcc----CCCCeEEEEECCCC
Confidence 111112223333 35667777532 34566777888776
No 193
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=60.31 E-value=3e+02 Score=31.25 Aligned_cols=106 Identities=14% Similarity=0.204 Sum_probs=58.6
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCc
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R 153 (889)
..++|.+|+.+...+++....... ...+....+.+|++....+ ....+|++|+.+.. +..+...+ .
T Consensus 257 ~~~i~~~d~~~~~~~~l~~~~~~~---~~~~~s~dg~~l~~~s~~~----g~~~iy~~d~~~~~--~~~l~~~~-----~ 322 (417)
T TIGR02800 257 NPDIYVMDLDGKQLTRLTNGPGID---TEPSWSPDGKSIAFTSDRG----GSPQIYMMDADGGE--VRRLTFRG-----G 322 (417)
T ss_pred CccEEEEECCCCCEEECCCCCCCC---CCEEECCCCCEEEEEECCC----CCceEEEEECCCCC--EEEeecCC-----C
Confidence 357999999988887775432111 0111111234565554322 12479999998755 66663222 2
Q ss_pred cccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEcc
Q 002713 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLN 197 (889)
Q Consensus 154 ~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~ 197 (889)
+........++..+++...+. ....++.+|+.+. .+..+.
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~--~~~~l~ 362 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGG--GERVLT 362 (417)
T ss_pred CccCeEECCCCCEEEEEEccC--CceEEEEEeCCCC--CeEEcc
Confidence 233333444455666655443 2347899999886 565554
No 194
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=60.23 E-value=9.9 Score=43.09 Aligned_cols=57 Identities=28% Similarity=0.315 Sum_probs=41.4
Q ss_pred CHHHHHHHHHhcCCe----EEEEeccccccceE---EecCCeEEEE---ecccccCCCCCCeEEEEEE
Q 002713 770 GPDRVSDFCKRNKLQ----LIIRAHECVMDGFE---RFAQGQLITL---FSATNYCGTANNAGAILVV 827 (889)
Q Consensus 770 g~~~~~~fl~~~~l~----~iiR~H~~~~~G~~---~~~~~~~itv---fSa~~y~~~~~n~ga~l~~ 827 (889)
.++...+.|+..||+ .||-||.+|.++=. .-++||+|-| ||- -|..+.+=+|--|..
T Consensus 514 de~ic~kil~eFGLdpe~ghiINGHtPVke~~GE~PIKAngKliVIDGGFsk-AYqs~TgiAGYTllY 580 (648)
T COG3855 514 DEEICRKILEEFGLDPEGGHIINGHTPVKEKNGENPIKANGKLIVIDGGFSK-AYQSTTGIAGYTLLY 580 (648)
T ss_pred hHHHHHHHHHHhCCCcccCceecCCCcccccCCCCCccCCCeEEEEcCchhh-hhhcccccceeEeee
Confidence 556788999999998 89999999976432 4589999988 664 365555555544443
No 195
>PRK04792 tolB translocation protein TolB; Provisional
Probab=59.98 E-value=3.3e+02 Score=31.69 Aligned_cols=146 Identities=16% Similarity=0.215 Sum_probs=71.3
Q ss_pred CcEEEEEccCCceEEEEEeecCCCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCC
Q 002713 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (889)
Q Consensus 126 ~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~-~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~ 204 (889)
..+|++|+.+.+ -..+. ..+.. ..+.+.. +++.+++....++ ..++|.+|+.++ ....+....
T Consensus 242 ~~L~~~dl~tg~--~~~lt---~~~g~--~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg--~~~~lt~~~---- 305 (448)
T PRK04792 242 AEIFVQDIYTQV--REKVT---SFPGI--NGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATK--ALTRITRHR---- 305 (448)
T ss_pred cEEEEEECCCCC--eEEec---CCCCC--cCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCC--CeEECccCC----
Confidence 579999998754 33441 11211 1122233 3334554443333 257999999988 677665421
Q ss_pred cccceEEEEecCCE-EEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECC-EEEEEcCCCCCCC
Q 002713 205 ARMYATASARSDGM-FLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGA-RLHVTGGALRGGR 282 (889)
Q Consensus 205 ~r~~~~a~~~~~~~-l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~-~lyV~GG~~~~~~ 282 (889)
.... ......+++ |++...... ..++|.++.... .++.....+. .....+..-++ .|++.+ ... +
T Consensus 306 ~~~~-~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g-~~~~Lt~~g~----~~~~~~~SpDG~~l~~~~-~~~-g- 372 (448)
T PRK04792 306 AIDT-EPSWHPDGKSLIFTSERGG----KPQIYRVNLASG-KVSRLTFEGE----QNLGGSITPDGRSMIMVN-RTN-G- 372 (448)
T ss_pred CCcc-ceEECCCCCEEEEEECCCC----CceEEEEECCCC-CEEEEecCCC----CCcCeeECCCCCEEEEEE-ecC-C-
Confidence 1111 122234544 444332221 247888887644 3333222111 11112222244 444443 221 1
Q ss_pred CccCCCcEEEEECCCCeEEecc
Q 002713 283 AIEGEAAVAVLDTAAGVWLDRN 304 (889)
Q Consensus 283 ~~~~~~~v~~yD~~t~~W~~v~ 304 (889)
...++.+|+.+...+.+.
T Consensus 373 ----~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 373 ----KFNIARQDLETGAMQVLT 390 (448)
T ss_pred ----ceEEEEEECCCCCeEEcc
Confidence 346899999998877654
No 196
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=59.83 E-value=2.3e+02 Score=29.70 Aligned_cols=190 Identities=12% Similarity=0.072 Sum_probs=97.8
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeec--CCC
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ--GQG 149 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~--~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~--g~~ 149 (889)
.+.++++|+.+.+-..+...+ ..+++.. ++.+|+.... .+.++|+.+.+ ++.+... +..
T Consensus 21 ~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~--~~~~~~~~~~~~ 83 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGK--VTVLADLPDGGV 83 (246)
T ss_dssp TTEEEEEETTTTEEEEEESSS-------EEEEEEECTTSEEEEEETT--------CEEEEETTTTE--EEEEEEEETTCS
T ss_pred CCEEEEEECCCCeEEEEecCC-------CceEEEEccCCEEEEEEcC--------ceEEEecCCCc--EEEEeeccCCCc
Confidence 568999999998776554222 3444444 5688777653 24667998865 6666443 221
Q ss_pred CCCccccEEEEECCcEEEEEecCCCC-ccc--CcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCC-EEEEEccC
Q 002713 150 PGPRYGHVMDLVSQRYLVSVSGNDGK-RVL--SDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDG-MFLLCGGR 225 (889)
Q Consensus 150 p~~R~~hs~~~~~~~~lyv~GG~~~~-~~l--ndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~-~l~v~GG~ 225 (889)
+..+.. -.++..++.+|+.--.... ... ..+|+++.. . +...+... .... ...+...++ .||+.--
T Consensus 84 ~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~--~~~~~~~~----~~~p-NGi~~s~dg~~lyv~ds- 153 (246)
T PF08450_consen 84 PFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G--KVTVVADG----LGFP-NGIAFSPDGKTLYVADS- 153 (246)
T ss_dssp CTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S--EEEEEEEE----ESSE-EEEEEETTSSEEEEEET-
T ss_pred ccCCCc-eEEEcCCCCEEEEecCCCccccccccceEEECCC-C--eEEEEecC----cccc-cceEECCcchheeeccc-
Confidence 333333 3345566778865332211 112 679999998 4 45444322 1111 122333444 5666322
Q ss_pred CCCCCcccceEEEecccCCe-eEEEeCC-CCCCCccceeEEEE-ECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEe
Q 002713 226 DASGAPLADAYGLLMHRNGQ-WEWTLAP-GVAPSPRYQHAAVF-VGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLD 302 (889)
Q Consensus 226 ~~~~~~~~dv~~l~~~~~~~-W~w~~~~-~~~p~~R~~hs~~~-~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~ 302 (889)
....+|.|+....+. +.-.... .......+--++++ -.+.|||..- . ...|++||++......
T Consensus 154 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~--~-------~~~I~~~~p~G~~~~~ 219 (246)
T PF08450_consen 154 -----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW--G-------GGRIVVFDPDGKLLRE 219 (246)
T ss_dssp -----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE--T-------TTEEEEEETTSCEEEE
T ss_pred -----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc--C-------CCEEEEECCCccEEEE
Confidence 134488888864432 3322211 11011112223444 3788998732 0 2469999999665555
Q ss_pred cc
Q 002713 303 RN 304 (889)
Q Consensus 303 v~ 304 (889)
+.
T Consensus 220 i~ 221 (246)
T PF08450_consen 220 IE 221 (246)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 197
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=58.64 E-value=3e+02 Score=30.72 Aligned_cols=203 Identities=14% Similarity=0.100 Sum_probs=87.2
Q ss_pred CcEEEE--ECCCCcEEEecCCCCCCcccCccEEEEE---CCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCC
Q 002713 75 NSVHLY--DVLTRKWTRIRPAGEPPSPRAAHAAAAV---GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQG 149 (889)
Q Consensus 75 ndv~~y--D~~t~~W~~l~~~g~~P~~R~~haa~~~---~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~ 149 (889)
..|++| |..+.+++.+..... -...+-.++ ++.||+..... .....+..|....++-+.+.+.... .
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~----~~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~-~ 84 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAE----GENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVP-S 84 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEE----SSSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEE-E
T ss_pred CcEEEEEEcCCCCCceEeeeecC----CCCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeec-c
Confidence 345554 558889987764211 111222222 45788886542 2334566665554322344442211 1
Q ss_pred CCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEc---------cCCCCCCCcccceEEEEecCCE-E
Q 002713 150 PGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL---------NPEGDRPSARMYATASARSDGM-F 219 (889)
Q Consensus 150 p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v---------~~~~~~P~~r~~~~a~~~~~~~-l 219 (889)
....-.|.+..-+++.+|+.--. -+.+..|++..+. .=... .+.........-|.+....+++ +
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~-----~g~v~v~~l~~~g-~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYG-----GGSVSVFPLDDDG-SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTS-EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred CCCCcEEEEEecCCCEEEEEEcc-----CCeEEEEEccCCc-ccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence 12222333322245566654322 2356666665521 11111 0000011222345555555654 5
Q ss_pred EEEccCCCCCCcccceEEEecccCC-eeEEEeCCCCCCCccceeEEEEE--CCEEEEEcCCCCCCCCccCCCcEEEEEC-
Q 002713 220 LLCGGRDASGAPLADAYGLLMHRNG-QWEWTLAPGVAPSPRYQHAAVFV--GARLHVTGGALRGGRAIEGEAAVAVLDT- 295 (889)
Q Consensus 220 ~v~GG~~~~~~~~~dv~~l~~~~~~-~W~w~~~~~~~p~~R~~hs~~~~--~~~lyV~GG~~~~~~~~~~~~~v~~yD~- 295 (889)
|+. .. -.+.++.|+..... ..+.......++-.-=.| +++. +..+||..-. .+.|.+|+.
T Consensus 159 ~v~-dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh-~~f~pdg~~~Yv~~e~---------s~~v~v~~~~ 222 (345)
T PF10282_consen 159 YVP-DL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH-LAFSPDGKYAYVVNEL---------SNTVSVFDYD 222 (345)
T ss_dssp EEE-ET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE-EEE-TTSSEEEEEETT---------TTEEEEEEEE
T ss_pred EEE-ec-----CCCEEEEEEEeCCCceEEEeeccccccCCCCcE-EEEcCCcCEEEEecCC---------CCcEEEEeec
Confidence 543 22 13457777765442 122211111111111122 3333 5689999653 234555554
Q ss_pred -CCCeEEeccCCc
Q 002713 296 -AAGVWLDRNGLV 307 (889)
Q Consensus 296 -~t~~W~~v~~~~ 307 (889)
.+..|+.+....
T Consensus 223 ~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 223 PSDGSLTEIQTIS 235 (345)
T ss_dssp TTTTEEEEEEEEE
T ss_pred ccCCceeEEEEee
Confidence 477777766553
No 198
>PRK04792 tolB translocation protein TolB; Provisional
Probab=58.30 E-value=3.6e+02 Score=31.47 Aligned_cols=142 Identities=14% Similarity=0.168 Sum_probs=71.8
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCcc
Q 002713 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (889)
Q Consensus 75 ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~ 154 (889)
..+|++|+.+.+-+.+.... ..-...+..--+..|++....+ ...++|++|+.+.+ .+.+.... -.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~--~~~lt~~~-----~~ 307 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKKLALVLSKD----GQPEIYVVDIATKA--LTRITRHR-----AI 307 (448)
T ss_pred cEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCEEEEEEeCC----CCeEEEEEECCCCC--eEECccCC-----CC
Confidence 46999999888777665321 1111111111234566554321 13579999998855 55552211 11
Q ss_pred ccEEEEECCc-EEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCccc
Q 002713 155 GHVMDLVSQR-YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (889)
Q Consensus 155 ~hs~~~~~~~-~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~ 233 (889)
....+...++ .+++....++ ..++|.+|+.++ ++..+...+. . ........+++.+++.+.... ..
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g--~~~~Lt~~g~----~-~~~~~~SpDG~~l~~~~~~~g---~~ 374 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGG---KPQIYRVNLASG--KVSRLTFEGE----Q-NLGGSITPDGRSMIMVNRTNG---KF 374 (448)
T ss_pred ccceEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEEecCCC----C-CcCeeECCCCCEEEEEEecCC---ce
Confidence 1122222333 4444332222 257999999887 7777753211 1 112233455555555443221 34
Q ss_pred ceEEEecccC
Q 002713 234 DAYGLLMHRN 243 (889)
Q Consensus 234 dv~~l~~~~~ 243 (889)
++|.++....
T Consensus 375 ~I~~~dl~~g 384 (448)
T PRK04792 375 NIARQDLETG 384 (448)
T ss_pred EEEEEECCCC
Confidence 6788887654
No 199
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=58.19 E-value=3.5e+02 Score=31.37 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=37.9
Q ss_pred EECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEec
Q 002713 107 AVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDT 186 (889)
Q Consensus 107 ~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~ 186 (889)
..++.+++.|+.+. -+-.+|.++.. . .....|..-.-|.+..+ -.++.+++-||+|+. +-.||+
T Consensus 120 ~~d~t~l~s~sDd~------v~k~~d~s~a~-v--~~~l~~htDYVR~g~~~--~~~~hivvtGsYDg~-----vrl~Dt 183 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDK------VVKYWDLSTAY-V--QAELSGHTDYVRCGDIS--PANDHIVVTGSYDGK-----VRLWDT 183 (487)
T ss_pred ccCCeEEEecCCCc------eEEEEEcCCcE-E--EEEecCCcceeEeeccc--cCCCeEEEecCCCce-----EEEEEe
Confidence 34688999988531 23345665543 1 22223444444544322 234579999999973 455777
Q ss_pred CCC
Q 002713 187 AQK 189 (889)
Q Consensus 187 ~t~ 189 (889)
.+.
T Consensus 184 R~~ 186 (487)
T KOG0310|consen 184 RSL 186 (487)
T ss_pred ccC
Confidence 665
No 200
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.08 E-value=23 Score=40.45 Aligned_cols=71 Identities=18% Similarity=0.324 Sum_probs=52.3
Q ss_pred cCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCC
Q 002713 584 RAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 659 (889)
Q Consensus 584 ~~~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 659 (889)
.++|.||||.-|.++.|.+-.+...-.. |. ..-++++|++.+--..+-|++.+.... .+.|--++++=+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~--Gp--Fd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKS--GP--FDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcC--CC--ceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence 3789999999999999988776654221 11 115788999999877888888777664 45677778877665
No 201
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=57.96 E-value=3.4e+02 Score=31.19 Aligned_cols=90 Identities=20% Similarity=0.184 Sum_probs=45.7
Q ss_pred eEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCee---EEEeCCCCCCCccce-eEEEEE
Q 002713 192 VWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQW---EWTLAPGVAPSPRYQ-HAAVFV 267 (889)
Q Consensus 192 ~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W---~w~~~~~~~p~~R~~-hs~~~~ 267 (889)
.|+.+... ..+...++....++.+++.|.. + .++.-+.. ...| +|.+..-. ..++. .++.+.
T Consensus 271 ~W~~~~~~----~~~~l~~v~~~~dg~l~l~g~~---G----~l~~S~d~-G~~~~~~~f~~~~~~--~~~~~l~~v~~~ 336 (398)
T PLN00033 271 YWQPHNRA----SARRIQNMGWRADGGLWLLTRG---G----GLYVSKGT-GLTEEDFDFEEADIK--SRGFGILDVGYR 336 (398)
T ss_pred ceEEecCC----CccceeeeeEcCCCCEEEEeCC---c----eEEEecCC-CCcccccceeecccC--CCCcceEEEEEc
Confidence 38887643 3333444444567788887742 1 12222222 2234 44544321 22232 233333
Q ss_pred -CCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccC
Q 002713 268 -GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 305 (889)
Q Consensus 268 -~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~ 305 (889)
++.++++|... -++.-.....+|+.+..
T Consensus 337 ~d~~~~a~G~~G----------~v~~s~D~G~tW~~~~~ 365 (398)
T PLN00033 337 SKKEAWAAGGSG----------ILLRSTDGGKSWKRDKG 365 (398)
T ss_pred CCCcEEEEECCC----------cEEEeCCCCcceeEccc
Confidence 67888888631 24444455678999764
No 202
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=55.07 E-value=3.6e+02 Score=30.57 Aligned_cols=146 Identities=19% Similarity=0.179 Sum_probs=70.9
Q ss_pred CcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCc-EEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCC
Q 002713 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQR-YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (889)
Q Consensus 126 ~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~-~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~ 204 (889)
..+|++|+.+.. ...+.. ...... +.+...++ .+++....++ ..++|.+|+.++ ....+......
T Consensus 214 ~~i~v~d~~~g~--~~~~~~---~~~~~~--~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~--~~~~l~~~~~~-- 279 (417)
T TIGR02800 214 PEIYVQDLATGQ--REKVAS---FPGMNG--APAFSPDGSKLAVSLSKDG---NPDIYVMDLDGK--QLTRLTNGPGI-- 279 (417)
T ss_pred cEEEEEECCCCC--EEEeec---CCCCcc--ceEECCCCCEEEEEECCCC---CccEEEEECCCC--CEEECCCCCCC--
Confidence 579999998754 333311 111111 22233333 4554433322 257999999887 56666432111
Q ss_pred cccceEEEEecCC-EEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEE-ECCEEEEEcCCCCCCC
Q 002713 205 ARMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVF-VGARLHVTGGALRGGR 282 (889)
Q Consensus 205 ~r~~~~a~~~~~~-~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~-~~~~lyV~GG~~~~~~ 282 (889)
.... ....++ .|++...... ..++|.++.... .+......+ .+....++ -+++.+++..... +
T Consensus 280 --~~~~-~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~-~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~-~- 344 (417)
T TIGR02800 280 --DTEP-SWSPDGKSIAFTSDRGG----SPQIYMMDADGG-EVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG-G- 344 (417)
T ss_pred --CCCE-EECCCCCEEEEEECCCC----CceEEEEECCCC-CEEEeecCC-----CCccCeEECCCCCEEEEEEccC-C-
Confidence 0111 122344 4444433221 236888887644 333222111 12222222 3555555554322 1
Q ss_pred CccCCCcEEEEECCCCeEEecc
Q 002713 283 AIEGEAAVAVLDTAAGVWLDRN 304 (889)
Q Consensus 283 ~~~~~~~v~~yD~~t~~W~~v~ 304 (889)
...++++|+.+..++.+.
T Consensus 345 ----~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 345 ----GFNIAVMDLDGGGERVLT 362 (417)
T ss_pred ----ceEEEEEeCCCCCeEEcc
Confidence 346999999987776654
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=53.98 E-value=3.3e+02 Score=29.83 Aligned_cols=97 Identities=12% Similarity=0.093 Sum_probs=44.2
Q ss_pred CcEEEEECCC-CcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCC
Q 002713 75 NSVHLYDVLT-RKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (889)
Q Consensus 75 ndv~~yD~~t-~~W~~l~~~g~~P~~R~~haa~~~--~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~ 151 (889)
+.+.+||..+ .+++.+.... .....+.++.- +..+|+.+. . ...+..|+...+ -++..+... ..+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~spd~~~lyv~~~-~-----~~~i~~~~~~~~-g~l~~~~~~-~~~~ 80 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVD---VPGQVQPMVISPDKRHLYVGVR-P-----EFRVLSYRIADD-GALTFAAES-PLPG 80 (330)
T ss_pred CCEEEEEECCCCceeeeeEEe---cCCCCccEEECCCCCEEEEEEC-C-----CCcEEEEEECCC-CceEEeeee-cCCC
Confidence 4678888864 5666554321 11112222222 346666543 1 255777777532 224444221 1111
Q ss_pred CccccEEEEE-CCcEEEEEecCCCCcccCcEEEEecCCC
Q 002713 152 PRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (889)
Q Consensus 152 ~R~~hs~~~~-~~~~lyv~GG~~~~~~lndv~~yd~~t~ 189 (889)
...| ++.. +++.+|+..-. .+.+..|++.++
T Consensus 81 -~p~~-i~~~~~g~~l~v~~~~-----~~~v~v~~~~~~ 112 (330)
T PRK11028 81 -SPTH-ISTDHQGRFLFSASYN-----ANCVSVSPLDKD 112 (330)
T ss_pred -CceE-EEECCCCCEEEEEEcC-----CCeEEEEEECCC
Confidence 1122 2233 34466665422 246667777543
No 204
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=53.77 E-value=18 Score=39.45 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=14.0
Q ss_pred HHHHh---cCCeEEEEeccccc
Q 002713 776 DFCKR---NKLQLIIRAHECVM 794 (889)
Q Consensus 776 ~fl~~---~~l~~iiR~H~~~~ 794 (889)
++.++ .++++||=||+-+.
T Consensus 200 ~lA~~~~~~giD~IigGHsH~~ 221 (285)
T cd07405 200 EMARALPAGGLDLIVGGHSQDP 221 (285)
T ss_pred HHHHhcCCCCCCEEEeCCCCcc
Confidence 44555 58999999997653
No 205
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=52.80 E-value=28 Score=34.82 Aligned_cols=40 Identities=30% Similarity=0.330 Sum_probs=28.8
Q ss_pred eEEEecccc--CCCCChHHHHHHHHHHhhcCCCcEEEecCCCccch
Q 002713 620 DYLFLGDYV--DRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 663 (889)
Q Consensus 620 ~~vfLGD~v--DRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 663 (889)
.++.-||+- -|=++..+-+.+|-+| |+.=++||||||...
T Consensus 46 iVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw 87 (230)
T COG1768 46 IVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWW 87 (230)
T ss_pred EEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCcccc
Confidence 466678885 3445556666666555 789999999999754
No 206
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=52.31 E-value=1.2e+02 Score=32.38 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=54.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCC----
Q 002713 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGP---- 120 (889)
Q Consensus 45 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~---- 120 (889)
+++||+.--.+.... +-+.+.+-+.....|..+..... .-....-.+.+++.||+||....
T Consensus 200 ~g~LyLtTRgt~~~~-------------~GS~L~rs~d~G~~w~slrfp~n--vHhtnlPFakvgD~l~mFgsERA~~EW 264 (367)
T PF12217_consen 200 DGVLYLTTRGTLPTN-------------PGSSLHRSDDNGQNWSSLRFPNN--VHHTNLPFAKVGDVLYMFGSERAENEW 264 (367)
T ss_dssp TTEEEEEEEES-TTS----------------EEEEESSTTSS-EEEE-TT-----SS---EEEETTEEEEEEE-SSTT-S
T ss_pred CCEEEEEEcCcCCCC-------------CcceeeeecccCCchhhcccccc--ccccCCCceeeCCEEEEEecccccccc
Confidence 888988764443221 35678888888889998863321 12223345678999999995321
Q ss_pred -CC----Cc---cCcEE--EEEccC---CceEEEEEee---cCCCCCCccccEEEEECCcE-EEEEecCC
Q 002713 121 -AG----HS---TDDLY--VLDLTN---DKFKWHRVVV---QGQGPGPRYGHVMDLVSQRY-LVSVSGND 173 (889)
Q Consensus 121 -~~----~~---~~dv~--~yD~~t---~~~~W~~v~~---~g~~p~~R~~hs~~~~~~~~-lyv~GG~~ 173 (889)
.+ ++ ....+ +.++++ +..+|..+.- +|.....-.+-..++++++. .|+|||.|
T Consensus 265 E~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 265 EGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp STT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred ccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 11 11 11122 223332 2245776642 34555555666666777765 45888876
No 207
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=52.26 E-value=18 Score=43.04 Aligned_cols=71 Identities=25% Similarity=0.283 Sum_probs=42.0
Q ss_pred cCCeEEEecCCCCHH------------HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCC------ChHHHHHHHHHHh
Q 002713 584 RAPVKVFGDLHGQFG------------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ------HSLETITLLLALK 645 (889)
Q Consensus 584 ~~~i~vvGDiHG~~~------------~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~------~s~evl~ll~~lk 645 (889)
+-.|+-..|+||.+. -+-++........++.. ..-+|=.||+++..+ ....++.+|-.|+
T Consensus 26 ~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~--~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~ 103 (517)
T COG0737 26 KLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENK--NVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALG 103 (517)
T ss_pred eEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcC--CeEEEeCCcccCCccccccccCCChHHHHHhhcC
Confidence 346888999999998 33333322221111110 113444999999843 3445666666664
Q ss_pred hcCCCcEEEecCCCcc
Q 002713 646 IEYPENVHLIRGNHEA 661 (889)
Q Consensus 646 ~~~p~~v~llrGNHE~ 661 (889)
. =.+-.||||.
T Consensus 104 y-----Da~tiGNHEF 114 (517)
T COG0737 104 Y-----DAMTLGNHEF 114 (517)
T ss_pred C-----cEEeeccccc
Confidence 3 3577899998
No 208
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=51.21 E-value=3.2e+02 Score=28.74 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=47.7
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCC
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~--~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~ 151 (889)
.+.+++||+.+.+....-..+. .+ ...+.. ++.+|+.++. ...+++||+.+.+. ...+ +.
T Consensus 52 ~~~v~~~d~~~~~~~~~~~~~~--~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~-~~~~------~~ 113 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGTLPSGP--DP---ELFALHPNGKILYIANED------DNLVTVIDIETRKV-LAEI------PV 113 (300)
T ss_pred CCeEEEEECCCCcEEEeccCCC--Cc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeE-EeEe------eC
Confidence 3568899998877654222211 11 122222 3456666542 23689999987431 1222 11
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCC
Q 002713 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (889)
Q Consensus 152 ~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~ 189 (889)
...-++++...++.+++++..++ +.++.||..+.
T Consensus 114 ~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~ 147 (300)
T TIGR03866 114 GVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTY 147 (300)
T ss_pred CCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCC
Confidence 11123444555556666665432 23556787765
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=51.12 E-value=4.4e+02 Score=30.40 Aligned_cols=195 Identities=12% Similarity=0.071 Sum_probs=90.8
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCcc
Q 002713 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (889)
Q Consensus 75 ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~ 154 (889)
..+|++|+.+.+...+.... ..-...+-.--+.+|++..... ...++|++|+.+.. ...+.. .+. .
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~---g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~~~--~~~Lt~---~~~--~ 291 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP---GMTFAPRFSPDGRKVVMSLSQG----GNTDIYTMDLRSGT--TTRLTD---SPA--I 291 (435)
T ss_pred CEEEEEECCCCcEEEeecCC---CcccCcEECCCCCEEEEEEecC----CCceEEEEECCCCc--eEEccC---CCC--c
Confidence 57999999998887775322 1111111111234555543321 13679999998855 444421 111 1
Q ss_pred ccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccc
Q 002713 155 GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLAD 234 (889)
Q Consensus 155 ~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~d 234 (889)
........++..++|...... ...+|.+|..+. ..+.+... ... ........+++.+++...... ...
T Consensus 292 ~~~~~~spDG~~i~f~s~~~g--~~~Iy~~d~~g~--~~~~lt~~----~~~-~~~~~~SpdG~~ia~~~~~~~---~~~ 359 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDRSG--SPQLYVMNADGS--NPRRISFG----GGR-YSTPVWSPRGDLIAFTKQGGG---QFS 359 (435)
T ss_pred cCceeEcCCCCEEEEEECCCC--CCeEEEEECCCC--CeEEeecC----CCc-ccCeEECCCCCEEEEEEcCCC---ceE
Confidence 112223333343344432211 247899998876 55555432 111 222223345555444432221 235
Q ss_pred eEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEecc
Q 002713 235 AYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRN 304 (889)
Q Consensus 235 v~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~ 304 (889)
++.++.... .. ..+... .........-+++.+++-....... ....++.+|+.+..-+.+.
T Consensus 360 i~~~d~~~~-~~--~~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~---~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 360 IGVMKPDGS-GE--RILTSG---FLVEGPTWAPNGRVIMFFRQTPGSG---GAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEEEECCCC-ce--EeccCC---CCCCCCeECCCCCEEEEEEccCCCC---CcceEEEEECCCCceEEcc
Confidence 677776433 11 122111 1122222223555544433221110 0246899999887666554
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=51.08 E-value=4.4e+02 Score=30.39 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=64.4
Q ss_pred CcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEec-CCCCcccCcEEEEecCCCCceEEEccCCCCCCC
Q 002713 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSG-NDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (889)
Q Consensus 126 ~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG-~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~ 204 (889)
..+|++|+.+.. -+.+.. .+. .........++..++++. .++. -++|.+|+.+. ....+....
T Consensus 228 ~~i~i~dl~tg~--~~~l~~---~~g--~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~--~~~~lt~~~---- 291 (429)
T PRK01742 228 SQLVVHDLRSGA--RKVVAS---FRG--HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGG--TPSQLTSGA---- 291 (429)
T ss_pred cEEEEEeCCCCc--eEEEec---CCC--ccCceeECCCCCEEEEEEecCCc---EEEEEEECCCC--CeEeeccCC----
Confidence 468999998754 333311 111 111233334444444433 3332 35889998876 555554321
Q ss_pred cccceEEEEecCCE-EEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECC-EEEEEcCCCCCCC
Q 002713 205 ARMYATASARSDGM-FLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGA-RLHVTGGALRGGR 282 (889)
Q Consensus 205 ~r~~~~a~~~~~~~-l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~-~lyV~GG~~~~~~ 282 (889)
.. ........|++ |++....+. ..++|.++..... -.. ... .. + .....-++ .|++.++
T Consensus 292 ~~-~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~-~~~--l~~---~~-~-~~~~SpDG~~ia~~~~------ 352 (429)
T PRK01742 292 GN-NTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGG-ASL--VGG---RG-Y-SAQISADGKTLVMING------ 352 (429)
T ss_pred CC-cCCEEECCCCCEEEEEECCCC----CceEEEEECCCCC-eEE--ecC---CC-C-CccCCCCCCEEEEEcC------
Confidence 11 11222334555 444333222 2367777665331 111 111 11 1 11122244 4444432
Q ss_pred CccCCCcEEEEECCCCeEEecc
Q 002713 283 AIEGEAAVAVLDTAAGVWLDRN 304 (889)
Q Consensus 283 ~~~~~~~v~~yD~~t~~W~~v~ 304 (889)
+.++.+|+.+..++.+.
T Consensus 353 -----~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 353 -----DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred -----CCEEEEECCCCCeEEec
Confidence 24778999998887654
No 211
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=50.59 E-value=2.8e+02 Score=28.04 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=32.0
Q ss_pred CEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCC
Q 002713 110 TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (889)
Q Consensus 110 ~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~ 189 (889)
+..++.|+. ...+.+||..+..... .+. .....-.++....++.+++.|+.+ ..+..||+.+.
T Consensus 63 ~~~l~~~~~------~~~i~i~~~~~~~~~~-~~~-----~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~ 125 (289)
T cd00200 63 GTYLASGSS------DKTIRLWDLETGECVR-TLT-----GHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETG 125 (289)
T ss_pred CCEEEEEcC------CCeEEEEEcCcccceE-EEe-----ccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCc
Confidence 345555553 3468889988743111 110 011122233333444566666644 36788888754
No 212
>PRK04922 tolB translocation protein TolB; Provisional
Probab=49.67 E-value=4.6e+02 Score=30.23 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=70.4
Q ss_pred cCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCc-EEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCC
Q 002713 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQR-YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRP 203 (889)
Q Consensus 125 ~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~-~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P 203 (889)
...+|++|+.+.+ ...+. ..+..- .+.....++ .+++....++ -.++|.+|+.++ ....+....
T Consensus 227 ~~~l~~~dl~~g~--~~~l~---~~~g~~--~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g--~~~~lt~~~--- 291 (433)
T PRK04922 227 RSAIYVQDLATGQ--RELVA---SFRGIN--GAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSR--QLTRLTNHF--- 291 (433)
T ss_pred CcEEEEEECCCCC--EEEec---cCCCCc--cCceECCCCCEEEEEEeCCC---CceEEEEECCCC--CeEECccCC---
Confidence 3569999998755 44441 122111 122222233 4544333333 257999999887 555554321
Q ss_pred CcccceEEEEecCCEEEEEc-cCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEE-E-CCEEEEEcCCCCC
Q 002713 204 SARMYATASARSDGMFLLCG-GRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVF-V-GARLHVTGGALRG 280 (889)
Q Consensus 204 ~~r~~~~a~~~~~~~l~v~G-G~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~-~-~~~lyV~GG~~~~ 280 (889)
.... ......+++.+++. .... ..++|.++.... ..+.....+ .+....++ - +..|++..+. +
T Consensus 292 -~~~~-~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g-~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~- 357 (433)
T PRK04922 292 -GIDT-EPTWAPDGKSIYFTSDRGG----RPQIYRVAASGG-SAERLTFQG-----NYNARASVSPDGKKIAMVHGS-G- 357 (433)
T ss_pred -CCcc-ceEECCCCCEEEEEECCCC----CceEEEEECCCC-CeEEeecCC-----CCccCEEECCCCCEEEEEECC-C-
Confidence 1111 12233455544443 2221 246888876543 333222211 12222222 2 4455554331 1
Q ss_pred CCCccCCCcEEEEECCCCeEEecc
Q 002713 281 GRAIEGEAAVAVLDTAAGVWLDRN 304 (889)
Q Consensus 281 ~~~~~~~~~v~~yD~~t~~W~~v~ 304 (889)
+ ...++++|+.++.++.+.
T Consensus 358 ~-----~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 358 G-----QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred C-----ceeEEEEECCCCCeEECC
Confidence 1 236999999988887654
No 213
>PLN00181 protein SPA1-RELATED; Provisional
Probab=49.47 E-value=6.4e+02 Score=31.77 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=15.3
Q ss_pred CcEEEEEecCCCCcccCcEEEEecCCC
Q 002713 163 QRYLVSVSGNDGKRVLSDAWALDTAQK 189 (889)
Q Consensus 163 ~~~lyv~GG~~~~~~lndv~~yd~~t~ 189 (889)
++.+++.||.++ .+..||+.+.
T Consensus 587 ~~~~L~Sgs~Dg-----~v~iWd~~~~ 608 (793)
T PLN00181 587 DPTLLASGSDDG-----SVKLWSINQG 608 (793)
T ss_pred CCCEEEEEcCCC-----EEEEEECCCC
Confidence 456777888764 4677887764
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=49.02 E-value=4.8e+02 Score=30.17 Aligned_cols=193 Identities=14% Similarity=0.100 Sum_probs=87.3
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCccEEEE-ECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCC
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAA-VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~-~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~ 152 (889)
..++|+.|.....=+.+.... .+ ...-... -+.+|.+.. .. . ....+|++|+.+.+ -+.+. ..+.
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~---~~-~~~p~wSPDG~~la~~s-~~-~--g~~~i~i~dl~~G~--~~~l~---~~~~- 243 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSP---QP-LMSPAWSPDGSKLAYVT-FE-S--GRSALVIQTLANGA--VRQVA---SFPR- 243 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCC---Cc-eeeeEEcCCCCEEEEEE-ec-C--CCcEEEEEECCCCC--eEEcc---CCCC-
Confidence 568999998764333332211 00 1111111 133444432 11 1 13568999998754 33331 1111
Q ss_pred ccccEEEEECCc-EEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCc
Q 002713 153 RYGHVMDLVSQR-YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 231 (889)
Q Consensus 153 R~~hs~~~~~~~-~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~ 231 (889)
.........++ .|++....++ ..++|.+|+.++ ....+.... .. ........+++.+++..... +
T Consensus 244 -~~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg--~~~~lt~~~----~~-~~~~~wSPDG~~I~f~s~~~-g-- 309 (429)
T PRK03629 244 -HNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASG--QIRQVTDGR----SN-NTEPTWFPDSQNLAYTSDQA-G-- 309 (429)
T ss_pred -CcCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCC--CEEEccCCC----CC-cCceEECCCCCEEEEEeCCC-C--
Confidence 11122233333 4544433232 235899999887 566654321 11 11222334555444433211 1
Q ss_pred ccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccC
Q 002713 232 LADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 305 (889)
Q Consensus 232 ~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~ 305 (889)
..++|.++.... .-. .+... ..........-+++.+++.+.... ...++++|++++.++.+..
T Consensus 310 ~~~Iy~~d~~~g-~~~--~lt~~--~~~~~~~~~SpDG~~Ia~~~~~~g------~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 310 RPQVYKVNINGG-APQ--RITWE--GSQNQDADVSSDGKFMVMVSSNGG------QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred CceEEEEECCCC-CeE--EeecC--CCCccCEEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEeCC
Confidence 246888877643 222 22111 111111222234444444332211 2469999999998887663
No 215
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=48.83 E-value=25 Score=38.35 Aligned_cols=38 Identities=24% Similarity=0.128 Sum_probs=22.8
Q ss_pred eEEEeccccCCCCCh-------HHHHHHHHHHhhcCCCcEEEecCCCccc
Q 002713 620 DYLFLGDYVDRGQHS-------LETITLLLALKIEYPENVHLIRGNHEAA 662 (889)
Q Consensus 620 ~~vfLGD~vDRG~~s-------~evl~ll~~lk~~~p~~v~llrGNHE~~ 662 (889)
-+|..||+++.-+.+ .-++.++-.+ +-=.+..||||.-
T Consensus 53 Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~m-----gyDa~tlGNHEFd 97 (282)
T cd07407 53 LLVDTGDLHDGNGLSDASPPPGSYSNPIFRMM-----PYDLLTIGNHELY 97 (282)
T ss_pred EEEeCCCccCCeeceeeecCCChHHHHHHHhc-----CCcEEeecccccC
Confidence 455699999754322 2234444444 3446788999983
No 216
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=48.63 E-value=3e+02 Score=27.82 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=43.2
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-C-CEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCC
Q 002713 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-G-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (889)
Q Consensus 75 ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~-~-~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~ 152 (889)
+.+++||..+.+....-. .....-.++.+ . +.+++.|+. ...+.+||+.+... ...+. ...
T Consensus 73 ~~i~i~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~-~~~~~-----~~~ 135 (289)
T cd00200 73 KTIRLWDLETGECVRTLT-----GHTSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETGKC-LTTLR-----GHT 135 (289)
T ss_pred CeEEEEEcCcccceEEEe-----ccCCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCcEE-EEEec-----cCC
Confidence 468888887643221111 01111222222 2 356666652 24588999986431 12221 111
Q ss_pred ccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCC
Q 002713 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (889)
Q Consensus 153 R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~ 189 (889)
..-.++....++.+++.|..+ ..+..||+.+.
T Consensus 136 ~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~ 167 (289)
T cd00200 136 DWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTG 167 (289)
T ss_pred CcEEEEEEcCcCCEEEEEcCC-----CcEEEEEcccc
Confidence 112223333434555555434 35778888754
No 217
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=48.49 E-value=3.4e+02 Score=28.34 Aligned_cols=146 Identities=14% Similarity=0.074 Sum_probs=71.3
Q ss_pred EEEEECCCCcEEEecCC--CCCCcccCccEEEEECCEEEEEcCcCCCCCcc--CcEEEEEccCCceEEEEEeecCCCCCC
Q 002713 77 VHLYDVLTRKWTRIRPA--GEPPSPRAAHAAAAVGTMVVFQGGIGPAGHST--DDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (889)
Q Consensus 77 v~~yD~~t~~W~~l~~~--g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~--~dv~~yD~~t~~~~W~~v~~~g~~p~~ 152 (889)
+.++|+.+.+++.+... +..+..|..-.++--++.||+.--........ ..+|++++. .+ ...+... -
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~-----~ 133 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADG-----L 133 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEE-----E
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecC-----c
Confidence 56679999999887644 21123333333333356777753211111112 679999998 33 3333211 1
Q ss_pred ccccEEEEECC-cEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCc-ccceEEEEecCCEEEEEccCCCCCC
Q 002713 153 RYGHVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSA-RMYATASARSDGMFLLCGGRDASGA 230 (889)
Q Consensus 153 R~~hs~~~~~~-~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~-r~~~~a~~~~~~~l~v~GG~~~~~~ 230 (889)
..-..++...+ +.||+.-- ..+.+|+|++......+.........+.. ..-..+++-.++.||+..-.
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----- 203 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----- 203 (246)
T ss_dssp SSEEEEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-----
T ss_pred ccccceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-----
Confidence 22234444433 46776322 23569999986542223322111011111 11234445568889997421
Q ss_pred cccceEEEecc
Q 002713 231 PLADAYGLLMH 241 (889)
Q Consensus 231 ~~~dv~~l~~~ 241 (889)
...+++|+..
T Consensus 204 -~~~I~~~~p~ 213 (246)
T PF08450_consen 204 -GGRIVVFDPD 213 (246)
T ss_dssp -TTEEEEEETT
T ss_pred -CCEEEEECCC
Confidence 2358888877
No 218
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=48.31 E-value=58 Score=35.45 Aligned_cols=76 Identities=13% Similarity=0.237 Sum_probs=48.8
Q ss_pred CCeEEEecCCC----CHHHHHHHHHHhC-CCCCCCCcceeeEEEeccccCCC----CChH----HHHHHHHHH-hhcCC-
Q 002713 585 APVKVFGDLHG----QFGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRG----QHSL----ETITLLLAL-KIEYP- 649 (889)
Q Consensus 585 ~~i~vvGDiHG----~~~~l~~il~~~g-~~~~~~~~~~~~~vfLGD~vDRG----~~s~----evl~ll~~l-k~~~p- 649 (889)
..++|+||+|= .++.|.++|+.+. .-+++ . ...-+||+|+++-+. ..+. |-+.-|..| ..+||
T Consensus 28 ~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~-~-~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPEN-E-LPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHhhccCccc-C-CCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 46899999994 5677888888873 21211 1 123699999998663 2222 334444442 33455
Q ss_pred ----CcEEEecCCCccc
Q 002713 650 ----ENVHLIRGNHEAA 662 (889)
Q Consensus 650 ----~~v~llrGNHE~~ 662 (889)
.+++++.|-.|-.
T Consensus 106 L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHhcCeEEEECCCCCCC
Confidence 7899999999974
No 219
>PRK00178 tolB translocation protein TolB; Provisional
Probab=47.14 E-value=4.9e+02 Score=29.81 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=70.4
Q ss_pred CcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCc-EEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCC
Q 002713 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQR-YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (889)
Q Consensus 126 ~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~-~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~ 204 (889)
..+|++|+.+.+ -+.+.. .+. .........++ .+++....++ ..++|.+|+.+. ....+....
T Consensus 223 ~~l~~~~l~~g~--~~~l~~---~~g--~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~~---- 286 (430)
T PRK00178 223 PRIFVQNLDTGR--REQITN---FEG--LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASR--QLSRVTNHP---- 286 (430)
T ss_pred CEEEEEECCCCC--EEEccC---CCC--CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCC--CeEEcccCC----
Confidence 479999998865 344421 111 11122233333 4443322222 258999999988 666664321
Q ss_pred cccceEEEEecCC-EEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcCCCCCCC
Q 002713 205 ARMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGR 282 (889)
Q Consensus 205 ~r~~~~a~~~~~~-~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~-~~~lyV~GG~~~~~~ 282 (889)
.. ........++ .|++...... ..++|.++.... .++.....+ .........- ++.|++.... . +
T Consensus 287 ~~-~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g-~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~-~-~- 353 (430)
T PRK00178 287 AI-DTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGG-RAERVTFVG----NYNARPRLSADGKTLVMVHRQ-D-G- 353 (430)
T ss_pred CC-cCCeEECCCCCEEEEEECCCC----CceEEEEECCCC-CEEEeecCC----CCccceEECCCCCEEEEEEcc-C-C-
Confidence 11 1112223444 4544432211 246888877544 333222111 1111112222 4445444321 1 1
Q ss_pred CccCCCcEEEEECCCCeEEeccC
Q 002713 283 AIEGEAAVAVLDTAAGVWLDRNG 305 (889)
Q Consensus 283 ~~~~~~~v~~yD~~t~~W~~v~~ 305 (889)
...++.+|+.+..++.+..
T Consensus 354 ----~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 ----NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ----ceEEEEEECCCCCEEEccC
Confidence 2359999999988877653
No 220
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=47.03 E-value=4e+02 Score=30.61 Aligned_cols=90 Identities=23% Similarity=0.320 Sum_probs=52.2
Q ss_pred cCCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCC
Q 002713 73 VTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (889)
Q Consensus 73 ~~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~ 152 (889)
.+|++|++|-.-+---++...+ |..|- +++-..++..|++-= +..+.+++.|+++.+ --++ -|..-.|
T Consensus 404 ~~N~vYilDe~lnvvGkltGl~--~gERI-YAvRf~gdv~yiVTf-----rqtDPlfviDlsNPe--nPkv--lGeLKIP 471 (603)
T COG4880 404 PVNAVYILDENLNVVGKLTGLA--PGERI-YAVRFVGDVLYIVTF-----RQTDPLFVIDLSNPE--NPKV--LGELKIP 471 (603)
T ss_pred ccceeEEEcCCCcEEEEEeccC--CCceE-EEEEEeCceEEEEEE-----eccCceEEEEcCCCC--CCce--eEEEecC
Confidence 5899999998877666665443 33443 344456777777643 346779999998743 1111 2333333
Q ss_pred ccccEEEEECCcEEEEEecCCC
Q 002713 153 RYGHVMDLVSQRYLVSVSGNDG 174 (889)
Q Consensus 153 R~~hs~~~~~~~~lyv~GG~~~ 174 (889)
-+..-..-++++.++=+|-.++
T Consensus 472 GfS~YLHpigen~~lGvG~~~g 493 (603)
T COG4880 472 GFSEYLHPIGENRLLGVGAYQG 493 (603)
T ss_pred CchhhccccCCCcEEEeecccC
Confidence 2222233446666665565553
No 221
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=46.57 E-value=3.8e+02 Score=28.36 Aligned_cols=155 Identities=13% Similarity=0.135 Sum_probs=71.0
Q ss_pred CCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEE-EEECCcEEEEEecCCCCcccCcEEEEecC
Q 002713 109 GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVM-DLVSQRYLVSVSGNDGKRVLSDAWALDTA 187 (889)
Q Consensus 109 ~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~-~~~~~~~lyv~GG~~~~~~lndv~~yd~~ 187 (889)
++.+++. .+............+..... -+|+...... ......+.+ +...++.++++-...... ..+.+-..
T Consensus 118 ~G~l~~~-~~~~~~~~~~~~~~~S~D~G-~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~~~~---~~~~~~S~ 190 (275)
T PF13088_consen 118 DGRLIAP-YYHESGGSFSAFVYYSDDGG-KTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTEGND---DIYISRST 190 (275)
T ss_dssp TTEEEEE-EEEESSCEEEEEEEEESSTT-SSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEECSST---EEEEEEES
T ss_pred CCCEEEE-EeeccccCcceEEEEeCCCC-ceeecccccc--ccCCcceeEEEECCCCcEEEEEEccCCC---cEEEEEEC
Confidence 5676665 22111112333344555443 3598774322 222333333 334677888776543111 44444333
Q ss_pred CCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEE-
Q 002713 188 QKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVF- 266 (889)
Q Consensus 188 t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~- 266 (889)
.+.-+|+..... ..|.+......+...++.++++... ..+. ..-...+......+|.....-...+...+.+....
T Consensus 191 D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~-~~~r-~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~ 267 (275)
T PF13088_consen 191 DGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNN-PDGR-SNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQ 267 (275)
T ss_dssp STTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEEC-SSTS-EEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEE
T ss_pred CCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEEC-CCCC-CceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEE
Confidence 333489986532 2244444444455577788888772 2221 11122223333446664433222122334444433
Q ss_pred E-CCEEEE
Q 002713 267 V-GARLHV 273 (889)
Q Consensus 267 ~-~~~lyV 273 (889)
. +++|||
T Consensus 268 ~~dg~l~i 275 (275)
T PF13088_consen 268 LPDGKLYI 275 (275)
T ss_dssp EETTEEEE
T ss_pred eCCCcCCC
Confidence 3 678886
No 222
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=46.56 E-value=42 Score=36.29 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=45.7
Q ss_pred CeEEEecCCCC--HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-CChHHHHHHHHHHhhcCCCcEEEecCCCccc
Q 002713 586 PVKVFGDLHGQ--FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEAA 662 (889)
Q Consensus 586 ~i~vvGDiHG~--~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG-~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 662 (889)
+|.++|||=|. ...|...|..+......+ -+|..||...-| --+-+++..|..+-+ .++.+ |||+.-
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D-----~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT~-GNH~~D 71 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQAD-----LVIANGENTTHGKGLTLKIYEFLKQSGV----NYITM-GNHTWF 71 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCC-----EEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEEc-cchhcc
Confidence 58999999999 456666666654322221 345589999766 457888888887643 45555 999974
No 223
>PRK04043 tolB translocation protein TolB; Provisional
Probab=45.83 E-value=5.3e+02 Score=29.80 Aligned_cols=152 Identities=11% Similarity=0.057 Sum_probs=75.9
Q ss_pred CcEEEEEccCCceEEEEEeecCCCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCC
Q 002713 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (889)
Q Consensus 126 ~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~-~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~ 204 (889)
.++|++|+.+.+ =+.+.. .+ .... +.... +++.+++.-..++ -.++|.+|+.++ .++.+.... .
T Consensus 213 ~~Iyv~dl~tg~--~~~lt~---~~-g~~~-~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g--~~~~LT~~~---~ 277 (419)
T PRK04043 213 PTLYKYNLYTGK--KEKIAS---SQ-GMLV-VSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTK--TLTQITNYP---G 277 (419)
T ss_pred CEEEEEECCCCc--EEEEec---CC-CcEE-eeEECCCCCEEEEEEccCC---CcEEEEEECCCC--cEEEcccCC---C
Confidence 389999998854 333311 11 1111 11122 3334544433332 358999999888 788775431 1
Q ss_pred cccceEEEEecCC-EEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEEC-CEEEEEcCCCCCCC
Q 002713 205 ARMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVG-ARLHVTGGALRGGR 282 (889)
Q Consensus 205 ~r~~~~a~~~~~~-~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~-~~lyV~GG~~~~~~ 282 (889)
.........|+ +|++...+.. ..++|.++.... ....+... ..+.. ...-+ ..|..........
T Consensus 278 --~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g---~~~rlt~~---g~~~~-~~SPDG~~Ia~~~~~~~~~- 343 (419)
T PRK04043 278 --IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSG---SVEQVVFH---GKNNS-SVSTYKNYIVYSSRETNNE- 343 (419)
T ss_pred --ccCccEECCCCCEEEEEECCCC----CceEEEEECCCC---CeEeCccC---CCcCc-eECCCCCEEEEEEcCCCcc-
Confidence 11122233444 5666554321 357898888654 22222211 11222 22224 4444443222111
Q ss_pred CccCCCcEEEEECCCCeEEeccCC
Q 002713 283 AIEGEAAVAVLDTAAGVWLDRNGL 306 (889)
Q Consensus 283 ~~~~~~~v~~yD~~t~~W~~v~~~ 306 (889)
.......++++|+++..++.+...
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred cCCCCcEEEEEECCCCCeEECCCC
Confidence 011135799999999999887653
No 224
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=45.62 E-value=1.4e+02 Score=30.33 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=61.1
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCCccchhhhhcCCh---HHHHHHhCC---------CCchhh
Q 002713 619 IDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFR---LECIERMGE---------NDGIWA 686 (889)
Q Consensus 619 ~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~---~e~~~~~~~---------~~~~~~ 686 (889)
..+|||| .|-+.-|.+.||-+|+.+|-.+.++ .|+-|.|..++...|. .+|..++.+ ..-..+
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 3689998 5899999999999999999877666 8999999887665553 112211110 011235
Q ss_pred hhhhhhhcCCCceEEEEcCeEEEecC
Q 002713 687 WTRFNQLFNCLPLAALIEKKIICMHG 712 (889)
Q Consensus 687 ~~~~~~~f~~LPlaa~i~~~i~~vHg 712 (889)
|..+..+.-.+++...+--+++.+-|
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NG 140 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNG 140 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECC
Confidence 56677777777777777656666666
No 225
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=44.47 E-value=56 Score=36.21 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=27.7
Q ss_pred eEEEeccccCCCC--ChHHHHHHHHHHhhcCCCcEEEecCCCccc
Q 002713 620 DYLFLGDYVDRGQ--HSLETITLLLALKIEYPENVHLIRGNHEAA 662 (889)
Q Consensus 620 ~~vfLGD~vDRG~--~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 662 (889)
-+||+||.|+--. +...++...++=.+.+.=-...+.||||..
T Consensus 103 lVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDde 147 (379)
T KOG1432|consen 103 LVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDE 147 (379)
T ss_pred EEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEecccccc
Confidence 6899999998621 333444444443444444477899999974
No 226
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=43.28 E-value=3.9e+02 Score=28.83 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=59.4
Q ss_pred CCcEEEEECCCCcEEEecC--CCCCCcccCccEEEEEC--CEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCC
Q 002713 74 TNSVHLYDVLTRKWTRIRP--AGEPPSPRAAHAAAAVG--TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQG 149 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~--~g~~P~~R~~haa~~~~--~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~ 149 (889)
+..+.+||.....=..... .-..|.+-..-+.+.++ +..+|.|+. ...+-+||..+.. ++......
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe------~G~is~~da~~g~----~~v~s~~~ 188 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE------DGSISIYDARTGK----ELVDSDEE 188 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC------CCcEEEEEcccCc----eeeechhh
Confidence 4556777776322111100 01123344555666665 466677764 2357789988753 11111111
Q ss_pred CCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCC
Q 002713 150 PGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA 227 (889)
Q Consensus 150 p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~ 227 (889)
.. +.--.+....+..++|-|..|.+.-+-|+..+.... +..... |. ..++..-..+.+++.||.+.
T Consensus 189 h~-~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K---ty~te~-----Pv---N~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 189 HS-SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK---TYTTER-----PV---NTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred hc-cccccccccCCcceEEecccCccceeeeccceeeEE---Eeeecc-----cc---cceecccccceEEecCCcee
Confidence 11 111112222455677777777655443333333322 122111 11 22333345567777777543
No 227
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=41.57 E-value=63 Score=34.69 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=41.8
Q ss_pred CeEEEecCCCCHH--HHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-CChHHHHHHHHHHhhcCCCcEEEecCCCcc
Q 002713 586 PVKVFGDLHGQFG--DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEA 661 (889)
Q Consensus 586 ~i~vvGDiHG~~~--~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG-~~s~evl~ll~~lk~~~p~~v~llrGNHE~ 661 (889)
+|.+||||=|.-. .+...|..+.-....+ -+|-.||..--| .-+-++..+|..+.. .++.+ ||||.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D-----~vi~NgEn~~gg~gl~~~~~~~L~~~G~----D~iTl-GNH~f 69 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKID-----FVIANGENAAGGKGITPKIAKELLSAGV----DVITM-GNHTW 69 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCC-----EEEECCccccCCCCCCHHHHHHHHhcCC----CEEEe-ccccc
Confidence 4789999999863 3344454443211110 344579998766 367788888888754 34444 99986
No 228
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=40.05 E-value=42 Score=41.19 Aligned_cols=69 Identities=17% Similarity=0.084 Sum_probs=40.8
Q ss_pred ecCCeEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH-----------
Q 002713 583 LRAPVKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL----------- 635 (889)
Q Consensus 583 ~~~~i~vvGDiHG~~~~----------------l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~----------- 635 (889)
+.-+|.-..|+||++.. +..+++...-... ..-+|-.||++...+.+-
T Consensus 24 ~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~llvD~GD~~qGsp~~~~~~~~~~~~g~ 98 (649)
T PRK09420 24 VDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAK-----NSVLVDNGDLIQGSPLGDYMAAKGLKAGD 98 (649)
T ss_pred ceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCC-----CEEEEECCCcCCCchhhhhhhhccccCCC
Confidence 34568889999999743 2333443321111 124666999997555321
Q ss_pred --HHHHHHHHHhhcCCCcEEEecCCCcc
Q 002713 636 --ETITLLLALKIEYPENVHLIRGNHEA 661 (889)
Q Consensus 636 --evl~ll~~lk~~~p~~v~llrGNHE~ 661 (889)
-++.++-.| +-=....||||.
T Consensus 99 ~~p~i~amN~l-----gyDa~tlGNHEF 121 (649)
T PRK09420 99 VHPVYKAMNTL-----DYDVGNLGNHEF 121 (649)
T ss_pred cchHHHHHHhc-----CCcEEeccchhh
Confidence 245555555 344678899996
No 229
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=39.78 E-value=49 Score=36.66 Aligned_cols=69 Identities=22% Similarity=0.137 Sum_probs=38.5
Q ss_pred eEEEecCCCCHH------HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-------------hHHHHHHHHHHhhc
Q 002713 587 VKVFGDLHGQFG------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-------------SLETITLLLALKIE 647 (889)
Q Consensus 587 i~vvGDiHG~~~------~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~-------------s~evl~ll~~lk~~ 647 (889)
|+-+-|+||++. .+..+++...-.... .....-+|..||.+.-++. ..-++.+|-++.
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~-~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g-- 79 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAA-EYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALG-- 79 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhc-cCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccC--
Confidence 667889999964 333334443211000 0011256679999875442 334455555553
Q ss_pred CCCcEEEecCCCcc
Q 002713 648 YPENVHLIRGNHEA 661 (889)
Q Consensus 648 ~p~~v~llrGNHE~ 661 (889)
-=.+..||||.
T Consensus 80 ---~Da~tlGNHEF 90 (313)
T cd08162 80 ---VQAIALGNHEF 90 (313)
T ss_pred ---CcEEecccccc
Confidence 33677899996
No 230
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.68 E-value=5.2e+02 Score=27.89 Aligned_cols=94 Identities=17% Similarity=0.336 Sum_probs=60.0
Q ss_pred cCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCC
Q 002713 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (889)
Q Consensus 125 ~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~ 204 (889)
+.-+-..|+.+..+.|+.+ -..|...++.+++| . +|+|-+.+ .+|.++..++.-.|..+... .
T Consensus 32 s~~~~avd~~sG~~~We~i------lg~RiE~sa~vvgd-f-VV~GCy~g-----~lYfl~~~tGs~~w~f~~~~----~ 94 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAI------LGVRIECSAIVVGD-F-VVLGCYSG-----GLYFLCVKTGSQIWNFVILE----T 94 (354)
T ss_pred CceEEEecCCCCcEEeehh------hCceeeeeeEEECC-E-EEEEEccC-----cEEEEEecchhheeeeeehh----h
Confidence 3457788999999999877 46688888888887 4 66776554 67888888876578776543 1
Q ss_pred cccceEEEEecCCEEEEEccCCCCCCcccceEEEecccC
Q 002713 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN 243 (889)
Q Consensus 205 ~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~ 243 (889)
.. ..+.+....+.|| +|-.+. ..|.+|..+.
T Consensus 95 vk-~~a~~d~~~glIy-cgshd~------~~yalD~~~~ 125 (354)
T KOG4649|consen 95 VK-VRAQCDFDGGLIY-CGSHDG------NFYALDPKTY 125 (354)
T ss_pred hc-cceEEcCCCceEE-EecCCC------cEEEeccccc
Confidence 11 1223333444444 454322 3677777655
No 231
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=39.08 E-value=6e+02 Score=28.50 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=77.3
Q ss_pred CCcEEEEECCCC--cEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEee--cCCC
Q 002713 74 TNSVHLYDVLTR--KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVV--QGQG 149 (889)
Q Consensus 74 ~ndv~~yD~~t~--~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~--~g~~ 149 (889)
.+.++++|..+. .|+.-...+ . ..+.....+.-.+.+|+. ..+ . ...++.+|..+.+..|..-.. .+..
T Consensus 162 ~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~~~~~~vy~~-~~~---~-~~~~~a~~~~~G~~~w~~~~~~~~~~~ 234 (370)
T COG1520 162 DGHLYALNADTGTLKWTYETPAP-L-SLSIYGSPAIASGTVYVG-SDG---Y-DGILYALNAEDGTLKWSQKVSQTIGRT 234 (370)
T ss_pred CCeEEEEEccCCcEEEEEecCCc-c-ccccccCceeecceEEEe-cCC---C-cceEEEEEccCCcEeeeeeeecccCcc
Confidence 467899988864 687433221 1 222222222334455554 322 1 236999999998888984311 1211
Q ss_pred CCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCC
Q 002713 150 PGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG 229 (889)
Q Consensus 150 p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~ 229 (889)
... ....+..+.+|+-|+.-.......++++|..+.+-.|+.-... .....+.+.+.....++++|+........
T Consensus 235 ~~~----~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~-~~~~~~~~~~~~~~~dG~v~~~~~~~~~~ 309 (370)
T COG1520 235 AIS----TTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGG-SVQGSGLYTTPVAGADGKVYIGFTDNDGR 309 (370)
T ss_pred ccc----ccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEeccc-EeccCCeeEEeecCCCccEEEEEeccccc
Confidence 110 1122233344444331111112348899998877789876541 11122323333333577887765432221
Q ss_pred CcccceEEEec
Q 002713 230 APLADAYGLLM 240 (889)
Q Consensus 230 ~~~~dv~~l~~ 240 (889)
....+++++.
T Consensus 310 -~~~~~~~~~~ 319 (370)
T COG1520 310 -GSGSLYALAD 319 (370)
T ss_pred -cccceEEEec
Confidence 3456677776
No 232
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=37.98 E-value=5.9e+02 Score=28.09 Aligned_cols=201 Identities=15% Similarity=0.188 Sum_probs=83.4
Q ss_pred CCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEE
Q 002713 83 LTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV 161 (889)
Q Consensus 83 ~t~~W~~l~~~g~~P~~R~~haa~~~-~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~ 161 (889)
.-.+|++++..... |-..+....+ ++.++++|..+ . +|-....--+|+.+..... -.-..+...
T Consensus 89 gG~tW~~v~l~~~l--pgs~~~i~~l~~~~~~l~~~~G-------~--iy~T~DgG~tW~~~~~~~~----gs~~~~~r~ 153 (302)
T PF14870_consen 89 GGKTWERVPLSSKL--PGSPFGITALGDGSAELAGDRG-------A--IYRTTDGGKTWQAVVSETS----GSINDITRS 153 (302)
T ss_dssp TTSS-EE----TT---SS-EEEEEEEETTEEEEEETT-----------EEEESSTTSSEEEEE-S--------EEEEEE-
T ss_pred CCCCcEEeecCCCC--CCCeeEEEEcCCCcEEEEcCCC-------c--EEEeCCCCCCeeEcccCCc----ceeEeEEEC
Confidence 34689998743322 3333444444 45777776532 2 3333333235988743111 112223344
Q ss_pred CCcEEEEEecCCCCcccCcEE-EEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEe-
Q 002713 162 SQRYLVSVSGNDGKRVLSDAW-ALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLL- 239 (889)
Q Consensus 162 ~~~~lyv~GG~~~~~~lndv~-~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~- 239 (889)
.++.+++++... .++ ..|+-.. .|+..... ..|+-.++....++.|++.. +.. . ++.-+
T Consensus 154 ~dG~~vavs~~G------~~~~s~~~G~~--~w~~~~r~----~~~riq~~gf~~~~~lw~~~-~Gg--~----~~~s~~ 214 (302)
T PF14870_consen 154 SDGRYVAVSSRG------NFYSSWDPGQT--TWQPHNRN----SSRRIQSMGFSPDGNLWMLA-RGG--Q----IQFSDD 214 (302)
T ss_dssp TTS-EEEEETTS------SEEEEE-TT-S--S-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT--E----EEEEE-
T ss_pred CCCcEEEEECcc------cEEEEecCCCc--cceEEccC----ccceehhceecCCCCEEEEe-CCc--E----EEEccC
Confidence 666776666432 333 3455554 68876543 56667777777888887754 211 1 22222
Q ss_pred cccCCeeEEEeCCCCCCCccceeEEEEE--CCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccCCccccCCCCCCC
Q 002713 240 MHRNGQWEWTLAPGVAPSPRYQHAAVFV--GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHG 317 (889)
Q Consensus 240 ~~~~~~W~w~~~~~~~p~~R~~hs~~~~--~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~ 317 (889)
..... +|.+.........++.-.+.+ .+.+++.||.. .+++=.=..++|++.......
T Consensus 215 ~~~~~--~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G----------~l~~S~DgGktW~~~~~~~~~-------- 274 (302)
T PF14870_consen 215 PDDGE--TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG----------TLLVSTDGGKTWQKDRVGENV-------- 274 (302)
T ss_dssp TTEEE--EE---B-TTSS--S-EEEEEESSSS-EEEEESTT-----------EEEESSTTSS-EE-GGGTTS--------
T ss_pred CCCcc--ccccccCCcccCceeeEEEEecCCCCEEEEeCCc----------cEEEeCCCCccceECccccCC--------
Confidence 12222 454432222234444333333 68899999832 233333346789998754221
Q ss_pred CCCCccCcccccceEEEEECCEEEEEcC
Q 002713 318 EHDPSLELMRRCRHASASIGVRIYIYGG 345 (889)
Q Consensus 318 ~~~~~~~p~~R~~h~~~~v~~~lyv~GG 345 (889)
| .-.......-+++-||+|-
T Consensus 275 -------~-~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 275 -------P-SNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp -------S-S---EEEEEETTEEEEE-S
T ss_pred -------C-CceEEEEEcCCCceEEECC
Confidence 0 1222333334668888886
No 233
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=37.57 E-value=2.5e+02 Score=30.36 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=58.2
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCc
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R 153 (889)
.+.+..||+.+++-.+.. .+|..-++-+++.++++||..-=. ....++||..+ .+.+ +..+-+.
T Consensus 67 ~S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~t----l~~~---~~~~y~~ 130 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK------EGTGFVYDPNT----LKKI---GTFPYPG 130 (264)
T ss_dssp EEEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS------SSEEEEEETTT----TEEE---EEEE-SS
T ss_pred cEEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec------CCeEEEEcccc----ceEE---EEEecCC
Confidence 467999999998765443 344566777889999999998653 34578999987 2333 2233345
Q ss_pred cccEEEEECCcEEEEEecCCCCcccCcEEEEecCCC
Q 002713 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (889)
Q Consensus 154 ~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~ 189 (889)
-|..++..++ .+|+--|. +.++.+|+.+-
T Consensus 131 EGWGLt~dg~-~Li~SDGS------~~L~~~dP~~f 159 (264)
T PF05096_consen 131 EGWGLTSDGK-RLIMSDGS------SRLYFLDPETF 159 (264)
T ss_dssp S--EEEECSS-CEEEE-SS------SEEEEE-TTT-
T ss_pred cceEEEcCCC-EEEEECCc------cceEEECCccc
Confidence 7777765544 77775553 46888888763
No 234
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=37.43 E-value=42 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=16.5
Q ss_pred HHHHHHHHHh-cCCeEEEEecccc
Q 002713 771 PDRVSDFCKR-NKLQLIIRAHECV 793 (889)
Q Consensus 771 ~~~~~~fl~~-~~l~~iiR~H~~~ 793 (889)
++++.+..++ -++++||=||+-.
T Consensus 256 en~~~~la~~~~gID~Il~GHsH~ 279 (1163)
T PRK09419 256 EDSVYDLAEKTKGIDAIVAGHQHG 279 (1163)
T ss_pred chHHHHHHHhCCCCcEEEeCCCcc
Confidence 4455667755 4899999999743
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=37.11 E-value=7e+02 Score=28.71 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=67.7
Q ss_pred CcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCc-EEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCC
Q 002713 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQR-YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (889)
Q Consensus 126 ~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~-~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~ 204 (889)
..+|++|+.+.+ =..+. ..+. ...+.....++ .+++....++ ..++|.+|..+. ....+... .
T Consensus 220 ~~I~~~dl~~g~--~~~l~---~~~g--~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~----~ 283 (427)
T PRK02889 220 PVVYVHDLATGR--RRVVA---NFKG--SNSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGS--GLRRLTQS----S 283 (427)
T ss_pred cEEEEEECCCCC--EEEee---cCCC--CccceEECCCCCEEEEEEccCC---CceEEEEECCCC--CcEECCCC----C
Confidence 469999998754 22331 1111 11122233333 4544343333 257999998776 45555332 1
Q ss_pred cccceEEEEecCCEEEEEccCCCCCCcccceEEEecccCCeeEEEeCCCCCCCccceeE-EEEECCEEEEEcCCCCCCCC
Q 002713 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHA-AVFVGARLHVTGGALRGGRA 283 (889)
Q Consensus 205 ~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs-~~~~~~~lyV~GG~~~~~~~ 283 (889)
.... ......|++.++|... ..+ ..++|.++.... ..+-....+ .+... ...-+++.+++....+ +
T Consensus 284 ~~~~-~~~wSpDG~~l~f~s~-~~g--~~~Iy~~~~~~g-~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~-g-- 350 (427)
T PRK02889 284 GIDT-EPFFSPDGRSIYFTSD-RGG--APQIYRMPASGG-AAQRVTFTG-----SYNTSPRISPDGKLLAYISRVG-G-- 350 (427)
T ss_pred CCCc-CeEEcCCCCEEEEEec-CCC--CcEEEEEECCCC-ceEEEecCC-----CCcCceEECCCCCEEEEEEccC-C--
Confidence 1111 1223345554444321 111 246787776533 222222111 11112 2222444333432211 1
Q ss_pred ccCCCcEEEEECCCCeEEecc
Q 002713 284 IEGEAAVAVLDTAAGVWLDRN 304 (889)
Q Consensus 284 ~~~~~~v~~yD~~t~~W~~v~ 304 (889)
...++++|+.+.+.+.+.
T Consensus 351 ---~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 351 ---AFKLYVQDLATGQVTALT 368 (427)
T ss_pred ---cEEEEEEECCCCCeEEcc
Confidence 236999999988877664
No 236
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=37.07 E-value=48 Score=40.53 Aligned_cols=66 Identities=20% Similarity=0.082 Sum_probs=38.1
Q ss_pred CeEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-------------HH
Q 002713 586 PVKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------LE 636 (889)
Q Consensus 586 ~i~vvGDiHG~~~~----------------l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s-------------~e 636 (889)
+|+-..||||++.. +..+++...-... ..-+|-.||.+.--+.+ .-
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p 78 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVK-----NSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHP 78 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCC-----CeEEEECCCcCCCccchhhhhhccccCCCcCh
Confidence 57788999999753 3334443321111 12466699999754432 22
Q ss_pred HHHHHHHHhhcCCCcEEEecCCCcc
Q 002713 637 TITLLLALKIEYPENVHLIRGNHEA 661 (889)
Q Consensus 637 vl~ll~~lk~~~p~~v~llrGNHE~ 661 (889)
++.+|-.|. -=.+..||||.
T Consensus 79 ~~~~mN~lg-----yDa~tlGNHEF 98 (626)
T TIGR01390 79 VYKAMNLLK-----YDVGNLGNHEF 98 (626)
T ss_pred HHHHHhhcC-----ccEEecccccc
Confidence 444444443 33578899996
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=35.71 E-value=7.4e+02 Score=28.54 Aligned_cols=191 Identities=12% Similarity=0.099 Sum_probs=89.4
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCC
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~-~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~ 152 (889)
...+|++|+.+++-+.+.... .. .......- +.+|++..... + ..++|++|+.+.. .+.+... .
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~---g~-~~~~~~SpDG~~l~~~~s~~--g--~~~Iy~~d~~~g~--~~~lt~~---~-- 291 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFR---GI-NGAPSFSPDGRRLALTLSRD--G--NPEIYVMDLGSRQ--LTRLTNH---F-- 291 (433)
T ss_pred CcEEEEEECCCCCEEEeccCC---CC-ccCceECCCCCEEEEEEeCC--C--CceEEEEECCCCC--eEECccC---C--
Confidence 346999999988877765321 11 11111111 34565543221 1 2579999998865 3444211 1
Q ss_pred ccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcc
Q 002713 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPL 232 (889)
Q Consensus 153 R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~ 232 (889)
......+...++..+++...... ..++|.+|..++ .+..+...+ ..........++..+++..... + .
T Consensus 292 ~~~~~~~~spDG~~l~f~sd~~g--~~~iy~~dl~~g--~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~~-~--~ 359 (433)
T PRK04922 292 GIDTEPTWAPDGKSIYFTSDRGG--RPQIYRVAASGG--SAERLTFQG-----NYNARASVSPDGKKIAMVHGSG-G--Q 359 (433)
T ss_pred CCccceEECCCCCEEEEEECCCC--CceEEEEECCCC--CeEEeecCC-----CCccCEEECCCCCEEEEEECCC-C--c
Confidence 11122233334444444432211 247899998887 666665322 1112223334554444432221 1 2
Q ss_pred cceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEec
Q 002713 233 ADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDR 303 (889)
Q Consensus 233 ~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v 303 (889)
..++.++.... ....+... + ........-+++.+++..... + ...++.+|++...=+.+
T Consensus 360 ~~I~v~d~~~g---~~~~Lt~~-~--~~~~p~~spdG~~i~~~s~~~-g-----~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 360 YRIAVMDLSTG---SVRTLTPG-S--LDESPSFAPNGSMVLYATREG-G-----RGVLAAVSTDGRVRQRL 418 (433)
T ss_pred eeEEEEECCCC---CeEECCCC-C--CCCCceECCCCCEEEEEEecC-C-----ceEEEEEECCCCceEEc
Confidence 25777776543 23333221 1 111122233566555543321 1 34588888866543333
No 238
>PRK13684 Ycf48-like protein; Provisional
Probab=35.30 E-value=6.7e+02 Score=27.92 Aligned_cols=165 Identities=14% Similarity=0.152 Sum_probs=76.6
Q ss_pred cEEEEECCCCcEEEecCCCCCCcccCccEEEEECC-EEEEEcCcCCCCCccCcEEEE-EccCCceEEEEEeecCCCCCCc
Q 002713 76 SVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGT-MVVFQGGIGPAGHSTDDLYVL-DLTNDKFKWHRVVVQGQGPGPR 153 (889)
Q Consensus 76 dv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~~-~Iyv~GG~~~~~~~~~dv~~y-D~~t~~~~W~~v~~~g~~p~~R 153 (889)
.+++-+-.-.+|+++... ..-.-+.+....+ .+++.|..+ .++.- |... -+|..+. .+..+
T Consensus 153 ~i~~S~DgG~tW~~~~~~----~~g~~~~i~~~~~g~~v~~g~~G-------~i~~s~~~gg--~tW~~~~----~~~~~ 215 (334)
T PRK13684 153 AIYRTTDGGKNWEALVED----AAGVVRNLRRSPDGKYVAVSSRG-------NFYSTWEPGQ--TAWTPHQ----RNSSR 215 (334)
T ss_pred eEEEECCCCCCceeCcCC----CcceEEEEEECCCCeEEEEeCCc-------eEEEEcCCCC--CeEEEee----CCCcc
Confidence 455544445789987632 1122334444444 444444432 12322 2222 3498872 34555
Q ss_pred cccEEEEECCcEEEEEecCCCCcccCcEEEEe-cCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcc
Q 002713 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALD-TAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPL 232 (889)
Q Consensus 154 ~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd-~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~ 232 (889)
.-++++...++.++++|.. + ..++. .... -+|+.+...... .....++.....++.+++.|.. +.
T Consensus 216 ~l~~i~~~~~g~~~~vg~~-G------~~~~~s~d~G-~sW~~~~~~~~~-~~~~l~~v~~~~~~~~~~~G~~---G~-- 281 (334)
T PRK13684 216 RLQSMGFQPDGNLWMLARG-G------QIRFNDPDDL-ESWSKPIIPEIT-NGYGYLDLAYRTPGEIWAGGGN---GT-- 281 (334)
T ss_pred cceeeeEcCCCCEEEEecC-C------EEEEccCCCC-CccccccCCccc-cccceeeEEEcCCCCEEEEcCC---Ce--
Confidence 6666666666778877643 2 12232 2221 278875421000 1111222333446678887752 11
Q ss_pred cceEEEecccCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcC
Q 002713 233 ADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGG 276 (889)
Q Consensus 233 ~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~-~~~lyV~GG 276 (889)
++. ......+|+-...... .+...+.+++. +++.|+.|.
T Consensus 282 --v~~-S~d~G~tW~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 282 --LLV-SKDGGKTWEKDPVGEE--VPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred --EEE-eCCCCCCCeECCcCCC--CCcceEEEEEeCCCceEEECC
Confidence 222 2222234443332122 22344455555 788888886
No 239
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=35.29 E-value=5.8e+02 Score=27.21 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=39.0
Q ss_pred EEEEEee--cCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecC
Q 002713 139 KWHRVVV--QGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSD 216 (889)
Q Consensus 139 ~W~~v~~--~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~ 216 (889)
.|+...+ .+..+.|-.+.-...-..+.+++.||. ..+|+.|++++ +-+..--. ..-.-|+.+....
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G--~i~r~~rG----HtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDG--RIQREYRG----HTDYVHSVVGRNA 167 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCC--EEEEEEcC----Ccceeeeeeeccc
Confidence 3655432 123344444443333255678777763 25788999998 44433221 2223355444333
Q ss_pred CEEEEEccCCC
Q 002713 217 GMFLLCGGRDA 227 (889)
Q Consensus 217 ~~l~v~GG~~~ 227 (889)
+-=++.|+.++
T Consensus 168 ~~qilsG~EDG 178 (325)
T KOG0649|consen 168 NGQILSGAEDG 178 (325)
T ss_pred CcceeecCCCc
Confidence 34455666443
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=34.32 E-value=3.5e+02 Score=32.21 Aligned_cols=99 Identities=9% Similarity=0.014 Sum_probs=53.9
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCccEEEEEC--CEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecC---C
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVG--TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQG---Q 148 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~~--~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g---~ 148 (889)
.++||++++..+.|-.--... . .+--+|.++ ..++.+||.. ..+..+|+.+.+. -..+.... .
T Consensus 154 g~evYRlNLEqGrfL~P~~~~---~--~~lN~v~in~~hgLla~Gt~~------g~VEfwDpR~ksr-v~~l~~~~~v~s 221 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETD---S--GELNVVSINEEHGLLACGTED------GVVEFWDPRDKSR-VGTLDAASSVNS 221 (703)
T ss_pred CcceEEEEccccccccccccc---c--ccceeeeecCccceEEecccC------ceEEEecchhhhh-heeeecccccCC
Confidence 468999999999986321111 1 222233343 4688888842 3578888887541 12221111 1
Q ss_pred CCCCccc--cEEEEECC-cEEEEEecCCCCcccCcEEEEecCCC
Q 002713 149 GPGPRYG--HVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQK 189 (889)
Q Consensus 149 ~p~~R~~--hs~~~~~~-~~lyv~GG~~~~~~lndv~~yd~~t~ 189 (889)
.|..-.. -++..+.+ +.-+.+|-.+ ..++.||+.+.
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts~-----G~v~iyDLRa~ 260 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTST-----GSVLIYDLRAS 260 (703)
T ss_pred CccccccCcceEEEecCCceeEEeeccC-----CcEEEEEcccC
Confidence 2222111 23334444 5555555444 46899999886
No 241
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=33.74 E-value=42 Score=30.79 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=51.8
Q ss_pred CCCceEEeCHHHHHHHHHhcCCeEEEEeccccccceEE------ecCCeEEEEeccc---ccCCCCCCeEEEEEEcCCc
Q 002713 762 RGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFER------FAQGQLITLFSAT---NYCGTANNAGAILVVGRGL 831 (889)
Q Consensus 762 rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~------~~~~~~itvfSa~---~y~~~~~n~ga~l~~~~~~ 831 (889)
|.+|.+.+|.+.+.+-+++...+++|.+-++-+++-+- +++-.+++.|+.- .-||. .+.+++.+.++++
T Consensus 13 ~rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk-~~~~~iai~d~g~ 90 (104)
T PRK05583 13 KKAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGR-DEIKILGVKDKNM 90 (104)
T ss_pred HHhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCC-CCeEEEEEeChHH
Confidence 34555789999999999999999999999998877542 2345678888762 45775 3477777777654
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=33.00 E-value=7.2e+02 Score=27.62 Aligned_cols=215 Identities=13% Similarity=0.107 Sum_probs=101.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCC--CcEEEecCCCCCCcccCccEEEEE--CC-EEEEEcCcC
Q 002713 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLT--RKWTRIRPAGEPPSPRAAHAAAAV--GT-MVVFQGGIG 119 (889)
Q Consensus 45 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t--~~W~~l~~~g~~P~~R~~haa~~~--~~-~Iyv~GG~~ 119 (889)
++.||+...... -.+.+..|+... .+.+.+.... ..-...+.+.+ ++ .+|+. .+.
T Consensus 48 ~~~LY~~~e~~~----------------~~g~v~~~~i~~~~g~L~~~~~~~---~~g~~p~~i~~~~~g~~l~va-ny~ 107 (345)
T PF10282_consen 48 GRRLYVVNEGSG----------------DSGGVSSYRIDPDTGTLTLLNSVP---SGGSSPCHIAVDPDGRFLYVA-NYG 107 (345)
T ss_dssp SSEEEEEETTSS----------------TTTEEEEEEEETTTTEEEEEEEEE---ESSSCEEEEEECTTSSEEEEE-ETT
T ss_pred CCEEEEEEcccc----------------CCCCEEEEEECCCcceeEEeeeec---cCCCCcEEEEEecCCCEEEEE-Ecc
Confidence 778888876531 134555555544 6777665321 11222222333 33 55553 332
Q ss_pred CCCCccCcEEEEEccCC-ceEEE--EEe--ecCCC---CCCccccEEEEEC-CcEEEEEecCCCCcccCcEEEEecCCCC
Q 002713 120 PAGHSTDDLYVLDLTND-KFKWH--RVV--VQGQG---PGPRYGHVMDLVS-QRYLVSVSGNDGKRVLSDAWALDTAQKP 190 (889)
Q Consensus 120 ~~~~~~~dv~~yD~~t~-~~~W~--~v~--~~g~~---p~~R~~hs~~~~~-~~~lyv~GG~~~~~~lndv~~yd~~t~~ 190 (889)
...+.+|++..+ ...-. .+. ..++- ...-.-|.+.... ++.+|+..- -.+.++.|+.....
T Consensus 108 -----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 108 -----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----GADRVYVYDIDDDT 177 (345)
T ss_dssp -----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS
T ss_pred -----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----CCCEEEEEEEeCCC
Confidence 245778888763 21111 111 11221 2233445554553 456776431 14578888887763
Q ss_pred ceEEEccCCCCC--CCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecc-cCCeeEEEeCCCCCC---Ccc-ceeE
Q 002713 191 YVWQRLNPEGDR--PSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMH-RNGQWEWTLAPGVAP---SPR-YQHA 263 (889)
Q Consensus 191 ~~W~~v~~~~~~--P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~-~~~~W~w~~~~~~~p---~~R-~~hs 263 (889)
............ -.|| |.+..-.+..+||..-. .+.+..|+.. .++.++........| ... ..+.
T Consensus 178 ~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e~------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 178 GKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNEL------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp -TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEETT------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred ceEEEeeccccccCCCCc--EEEEcCCcCEEEEecCC------CCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 124332211111 1233 44444345678887643 3445555555 345665544332222 222 2333
Q ss_pred EEEE--CCEEEEEcCCCCCCCCccCCCcEEEEEC--CCCeEEeccCC
Q 002713 264 AVFV--GARLHVTGGALRGGRAIEGEAAVAVLDT--AAGVWLDRNGL 306 (889)
Q Consensus 264 ~~~~--~~~lyV~GG~~~~~~~~~~~~~v~~yD~--~t~~W~~v~~~ 306 (889)
.++. +..|||.-.. .+.|.+|++ .+.+.+.+...
T Consensus 250 i~ispdg~~lyvsnr~---------~~sI~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRG---------SNSISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp EEE-TTSSEEEEEECT---------TTEEEEEEECTTTTTEEEEEEE
T ss_pred EEEecCCCEEEEEecc---------CCEEEEEEEecCCCceEEEEEE
Confidence 3343 5678886431 456777776 45666666555
No 243
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=32.89 E-value=8.4e+02 Score=28.32 Aligned_cols=59 Identities=17% Similarity=0.313 Sum_probs=34.1
Q ss_pred cEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCcccc--EEEEECCcEEEEEecCCC
Q 002713 103 HAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGH--VMDLVSQRYLVSVSGNDG 174 (889)
Q Consensus 103 haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~h--s~~~~~~~~lyv~GG~~~ 174 (889)
|+.+..+.--|++||. ...++|++.+++..+ + ..-.+.|.. +....+|+.+++-||.|+
T Consensus 85 ~al~s~n~G~~l~ag~-----i~g~lYlWelssG~L----L----~v~~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGT-----ISGNLYLWELSSGIL----L----NVLSAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred eeeecCCCceEEEeec-----ccCcEEEEEeccccH----H----HHHHhhccceeEEEEeCCCcEEEecCCCc
Confidence 5555555556666662 345689988888431 1 001122222 223337889999999986
No 244
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=32.55 E-value=59 Score=34.91 Aligned_cols=64 Identities=28% Similarity=0.325 Sum_probs=39.5
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCC-CcEEEecCCCccc
Q 002713 585 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYP-ENVHLIRGNHEAA 662 (889)
Q Consensus 585 ~~i~vvGDiHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p-~~v~llrGNHE~~ 662 (889)
.+.+.|+|.|....+.. ..|+.+ -++-+||+-.-|. +-||+.+=-.+ -..| .+=+.|+||||.-
T Consensus 62 ~r~VcisdtH~~~~~i~------~~p~gD------vlihagdfT~~g~-~~ev~~fn~~~-gslph~yKIVIaGNHELt 126 (305)
T KOG3947|consen 62 ARFVCISDTHELTFDIN------DIPDGD------VLIHAGDFTNLGL-PEEVIKFNEWL-GSLPHEYKIVIAGNHELT 126 (305)
T ss_pred eEEEEecCcccccCccc------cCCCCc------eEEeccCCccccC-HHHHHhhhHHh-ccCcceeeEEEeecccee
Confidence 46899999998765543 344443 4577999987664 33444432222 1122 2347899999984
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=32.33 E-value=8.1e+02 Score=28.01 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=87.3
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEE---CCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCC
Q 002713 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV---GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (889)
Q Consensus 75 ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~---~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~ 151 (889)
..+|++|+.+.+-+++..... ... +..+ +.+|++..... + ..++|++|+.+.. .+.+.. .+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g-----~~~-~~~~SpDG~~la~~~~~~--g--~~~Iy~~d~~~~~--~~~lt~---~~- 286 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG-----LNG-APAWSPDGSKLAFVLSKD--G--NPEIYVMDLASRQ--LSRVTN---HP- 286 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC-----CcC-CeEECCCCCEEEEEEccC--C--CceEEEEECCCCC--eEEccc---CC-
Confidence 479999999888877653221 111 1222 34555443211 1 2579999999865 555521 11
Q ss_pred CccccEEEEECC-cEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCC
Q 002713 152 PRYGHVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGA 230 (889)
Q Consensus 152 ~R~~hs~~~~~~-~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~ 230 (889)
..........+ +.+++....++ ...+|.+|+.++ .+..+...+ ..........+++.+++......
T Consensus 287 -~~~~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g--~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~-- 353 (430)
T PRK00178 287 -AIDTEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGG--RAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG-- 353 (430)
T ss_pred -CCcCCeEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEeecCC-----CCccceEECCCCCEEEEEEccCC--
Confidence 11112222333 34444332222 247899999887 676664321 11122223345544444433221
Q ss_pred cccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCC
Q 002713 231 PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG 298 (889)
Q Consensus 231 ~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~ 298 (889)
..+++.++.... . ...+... .........-+++.+++..... + ...+++.+....
T Consensus 354 -~~~l~~~dl~tg-~--~~~lt~~---~~~~~p~~spdg~~i~~~~~~~-g-----~~~l~~~~~~g~ 408 (430)
T PRK00178 354 -NFHVAAQDLQRG-S--VRILTDT---SLDESPSVAPNGTMLIYATRQQ-G-----RGVLMLVSINGR 408 (430)
T ss_pred -ceEEEEEECCCC-C--EEEccCC---CCCCCceECCCCCEEEEEEecC-C-----ceEEEEEECCCC
Confidence 235788887654 2 2333221 1111122233666666643321 1 234777777644
No 246
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.16 E-value=8.7e+02 Score=28.31 Aligned_cols=127 Identities=20% Similarity=0.281 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCC-cEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCC
Q 002713 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTR-KWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPA 121 (889)
Q Consensus 45 ~~~lyvfGG~~~~~~~~~~~~~~~~~~~~~ndv~~yD~~t~-~W~~l~~~g~~P~~R~~haa~~~--~~~Iyv~GG~~~~ 121 (889)
++.|++-||+.+ .+-.||..+. .|..--..| .|. . ..+.+ +..|...||
T Consensus 165 ~~hivvtGsYDg-------------------~vrl~DtR~~~~~v~elnhg-~pV--e--~vl~lpsgs~iasAgG---- 216 (487)
T KOG0310|consen 165 NDHIVVTGSYDG-------------------KVRLWDTRSLTSRVVELNHG-CPV--E--SVLALPSGSLIASAGG---- 216 (487)
T ss_pred CCeEEEecCCCc-------------------eEEEEEeccCCceeEEecCC-Cce--e--eEEEcCCCCEEEEcCC----
Confidence 678999999863 4566777765 443221122 111 1 12222 245555566
Q ss_pred CCccCcEEEEEccCCceEEEEEeecCCCCCCcccc-----EEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEc
Q 002713 122 GHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGH-----VMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL 196 (889)
Q Consensus 122 ~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~h-----s~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v 196 (889)
+.+-++|+.+. +.++..+..| ++....++.-++-||-|+ .|-+||+. .|.-+
T Consensus 217 ----n~vkVWDl~~G----------~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd~t----~~Kvv 273 (487)
T KOG0310|consen 217 ----NSVKVWDLTTG----------GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFDTT----NYKVV 273 (487)
T ss_pred ----CeEEEEEecCC----------ceehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEEEcc----ceEEE
Confidence 34677777653 2344444433 222334445666777775 56678843 35555
Q ss_pred cCCCCCCCcccceEEEEecCCEEEEEccC
Q 002713 197 NPEGDRPSARMYATASARSDGMFLLCGGR 225 (889)
Q Consensus 197 ~~~~~~P~~r~~~~a~~~~~~~l~v~GG~ 225 (889)
.... -|.|- -+..+..++.-++.|..
T Consensus 274 ~s~~-~~~pv--Lsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 274 HSWK-YPGPV--LSIAVSPDDQTVVIGMS 299 (487)
T ss_pred Eeee-cccce--eeEEecCCCceEEEecc
Confidence 4431 12332 23444556667777764
No 247
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=31.37 E-value=2.9e+02 Score=31.86 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=30.8
Q ss_pred cEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEE---EecCCEEEEEccCCCC
Q 002713 156 HVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATAS---ARSDGMFLLCGGRDAS 228 (889)
Q Consensus 156 hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~---~~~~~~l~v~GG~~~~ 228 (889)
++.+....+.+++.|+.. .++|.+.+.++. .+.. ..+.|.... ...|++++|.||.++.
T Consensus 85 ~al~s~n~G~~l~ag~i~-----g~lYlWelssG~----LL~v-----~~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTIS-----GNLYLWELSSGI----LLNV-----LSAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeeecCCCceEEEeeccc-----CcEEEEEecccc----HHHH-----HHhhccceeEEEEeCCCcEEEecCCCcc
Confidence 444445555555444444 367777776651 1111 122233332 3368899999986554
No 248
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=31.33 E-value=51 Score=35.30 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=34.3
Q ss_pred CHHHHHHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccc
Q 002713 770 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATN 813 (889)
Q Consensus 770 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~ 813 (889)
...-+.+||+.+|..+. +|++..||.|++++-+|+||---.
T Consensus 139 ~~~~~~~fl~~lGy~~~---~Eyv~~G~~F~~g~i~I~l~ri~~ 179 (250)
T PF09637_consen 139 TSGSLLSFLNELGYRFD---YEYVVEGYRFFKGDIVIELFRIFK 179 (250)
T ss_dssp SSSSHHHHHHHTTEEEE---EEEEEEEEEEEECCEEEEEEEEEE
T ss_pred CCCCHHHHHHHcCCceE---EEEEEEEEEEEECCEEEEEEEEEe
Confidence 45678899999998765 999999999999998888876433
No 249
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=29.65 E-value=6.9e+02 Score=26.35 Aligned_cols=211 Identities=15% Similarity=0.184 Sum_probs=92.9
Q ss_pred CcEEEecCCCCCC--cccCccEEEEE--CCEEEEEc--CcCCCCCccCcE-EEEEccCCceEEEEEeec--C-CCCCCcc
Q 002713 85 RKWTRIRPAGEPP--SPRAAHAAAAV--GTMVVFQG--GIGPAGHSTDDL-YVLDLTNDKFKWHRVVVQ--G-QGPGPRY 154 (889)
Q Consensus 85 ~~W~~l~~~g~~P--~~R~~haa~~~--~~~Iyv~G--G~~~~~~~~~dv-~~yD~~t~~~~W~~v~~~--g-~~p~~R~ 154 (889)
.+|.........+ ..+....+.+. +++|+++- +..........+ +....+.. .+|...... + .....-.
T Consensus 30 ~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G-~TWs~~~~l~~~~~~~~~~~ 108 (275)
T PF13088_consen 30 KTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGG-KTWSEPTDLPPGWFGNFSGP 108 (275)
T ss_dssp TEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTT-SS-EEEEEEHHHCCCSCEEC
T ss_pred CeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCC-CCCCCccccccccccceecc
Confidence 5798765433322 22333344443 56777775 222111111122 23333322 348776421 1 1111111
Q ss_pred ccE-EEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEE-EecCCEEEEEccCCCCCCcc
Q 002713 155 GHV-MDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATAS-ARSDGMFLLCGGRDASGAPL 232 (889)
Q Consensus 155 ~hs-~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~-~~~~~~l~v~GG~~~~~~~~ 232 (889)
.+. .....++.+++..-............|..... -+|+...... +.....+.+. ...++.|+++--.. ...
T Consensus 109 ~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G-~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~-- 182 (275)
T PF13088_consen 109 GRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGG-KTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND-- 182 (275)
T ss_dssp SEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTT-SSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST--
T ss_pred ceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCC-ceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC--
Confidence 122 23445667776521111112333444555443 2798876542 1223333443 34678888876432 111
Q ss_pred cceEEEec-ccCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccCCcc
Q 002713 233 ADAYGLLM-HRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVT 308 (889)
Q Consensus 233 ~dv~~l~~-~~~~~W~w~~~~~~~p~~R~~hs~~~~-~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~ 308 (889)
.++.... ....+|+-...... |.+.....++.. ++.++++..... .+ ....+++-.-...+|.....+..
T Consensus 183 -~~~~~~S~D~G~TWs~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~-~r---~~l~l~~S~D~g~tW~~~~~i~~ 254 (275)
T PF13088_consen 183 -DIYISRSTDGGRTWSPPQPTNL-PNPNSSISLVRLSDGRLLLVYNNPD-GR---SNLSLYVSEDGGKTWSRPKTIDD 254 (275)
T ss_dssp -EEEEEEESSTTSS-EEEEEEEC-SSCCEEEEEEECTTSEEEEEEECSS-TS---EEEEEEEECTTCEEEEEEEEEEE
T ss_pred -cEEEEEECCCCCcCCCceeccc-CcccCCceEEEcCCCCEEEEEECCC-CC---CceEEEEEeCCCCcCCccEEEeC
Confidence 3333333 33346765442222 445555554444 567777766211 11 12334443444789998776644
No 250
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=29.21 E-value=1e+02 Score=37.15 Aligned_cols=37 Identities=24% Similarity=0.091 Sum_probs=23.2
Q ss_pred eEEEeccccCCCCCh-----HHHHHHHHHHhhcCCCcEEEecCCCcc
Q 002713 620 DYLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRGNHEA 661 (889)
Q Consensus 620 ~~vfLGD~vDRG~~s-----~evl~ll~~lk~~~p~~v~llrGNHE~ 661 (889)
-+|..||.+..-+.+ ...+.+|-++ +--.+..||||.
T Consensus 52 l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~-----g~Da~~lGNHEF 93 (550)
T TIGR01530 52 LVLHAGDAIIGTLYFTLFGGRADAALMNAA-----GFDFFTLGNHEF 93 (550)
T ss_pred EEEECCCCCCCccchhhcCCHHHHHHHhcc-----CCCEEEeccccc
Confidence 566799998654322 2334444444 344788999996
No 251
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=29.07 E-value=4.4e+02 Score=26.95 Aligned_cols=76 Identities=12% Similarity=0.230 Sum_probs=43.5
Q ss_pred CcCCCCCccCcEEEEEccCCceEEEEEeecCC--CCCCccccEEEEECCcEEEEEecCCCC-cccCcEEEEecCCCCceE
Q 002713 117 GIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQ--GPGPRYGHVMDLVSQRYLVSVSGNDGK-RVLSDAWALDTAQKPYVW 193 (889)
Q Consensus 117 G~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~--~p~~R~~hs~~~~~~~~lyv~GG~~~~-~~lndv~~yd~~t~~~~W 193 (889)
|-...-....++|++|+.++. |..+..... --.|. ...-+-+...++++|..-|. ..-..+|.|++.++ .=
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~--~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg--~~ 152 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNN--WWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTG--NL 152 (200)
T ss_pred CCccccccceeEEEEecCCCc--eEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCC--ce
Confidence 333344567889999998866 544433211 22333 22223355566677754432 22468999999998 55
Q ss_pred EEccC
Q 002713 194 QRLNP 198 (889)
Q Consensus 194 ~~v~~ 198 (889)
+.+..
T Consensus 153 ~~ly~ 157 (200)
T PF15525_consen 153 TELYE 157 (200)
T ss_pred eEeee
Confidence 55544
No 252
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=28.87 E-value=9e+02 Score=27.43 Aligned_cols=205 Identities=12% Similarity=0.068 Sum_probs=100.4
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CC-EEEEEcCcCCC-----CCccCcEEEEEccCCceEEEEEeec
Q 002713 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GT-MVVFQGGIGPA-----GHSTDDLYVLDLTNDKFKWHRVVVQ 146 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~-~~-~Iyv~GG~~~~-----~~~~~dv~~yD~~t~~~~W~~v~~~ 146 (889)
...++++|+.+++...-. ..+...+.+.+ .+ ..+++...... ...-..+|+..+.+..-.=..| ..
T Consensus 149 ~~~l~v~Dl~tg~~l~d~------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lv-fe 221 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLPDG------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELV-FE 221 (414)
T ss_dssp EEEEEEEETTTTEEEEEE------EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEE-EC
T ss_pred eEEEEEEECCCCcCcCCc------ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeE-Ee
Confidence 446999999998543211 22333332444 33 44444443322 2236778988887753111122 11
Q ss_pred CCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCC---CceEEEccCCCCCCCcccceEEEEecCCEEEEEc
Q 002713 147 GQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK---PYVWQRLNPEGDRPSARMYATASARSDGMFLLCG 223 (889)
Q Consensus 147 g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~---~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~G 223 (889)
..-... +...+....++.++++.-..+.. .+++|.++.... ...|..+... ..- ....+...++.+|+.-
T Consensus 222 ~~~~~~-~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~----~~~-~~~~v~~~~~~~yi~T 294 (414)
T PF02897_consen 222 EPDEPF-WFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPR----EDG-VEYYVDHHGDRLYILT 294 (414)
T ss_dssp -TTCTT-SEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEES----SSS--EEEEEEETTEEEEEE
T ss_pred ecCCCc-EEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCC----CCc-eEEEEEccCCEEEEee
Confidence 222221 13333334444444444433333 588999999873 3468877542 111 1222334477888876
Q ss_pred cCCCCCCcccceEEEecccCC--eeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECC-CCeE
Q 002713 224 GRDASGAPLADAYGLLMHRNG--QWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTA-AGVW 300 (889)
Q Consensus 224 G~~~~~~~~~dv~~l~~~~~~--~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~-t~~W 300 (889)
..+. ....++.++..... .|.-...+.. ....--.+...++.|++.-=.. ....+.+||+. +..-
T Consensus 295 n~~a---~~~~l~~~~l~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~Lvl~~~~~-------~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 295 NDDA---PNGRLVAVDLADPSPAEWWTVLIPED--EDVSLEDVSLFKDYLVLSYREN-------GSSRLRVYDLDDGKES 362 (414)
T ss_dssp -TT----TT-EEEEEETTSTSGGGEEEEEE--S--SSEEEEEEEEETTEEEEEEEET-------TEEEEEEEETT-TEEE
T ss_pred CCCC---CCcEEEEecccccccccceeEEcCCC--CceeEEEEEEECCEEEEEEEEC-------CccEEEEEECCCCcEE
Confidence 5322 34557777776553 2443222211 1123334455688888874321 14579999998 4444
Q ss_pred Eecc
Q 002713 301 LDRN 304 (889)
Q Consensus 301 ~~v~ 304 (889)
..+.
T Consensus 363 ~~~~ 366 (414)
T PF02897_consen 363 REIP 366 (414)
T ss_dssp EEEE
T ss_pred eeec
Confidence 4443
No 253
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=27.91 E-value=66 Score=36.77 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCeEEEEeccccc
Q 002713 773 RVSDFCKRNKLQLIIRAHECVM 794 (889)
Q Consensus 773 ~~~~fl~~~~l~~iiR~H~~~~ 794 (889)
.++-.|+++++++.|-||+-..
T Consensus 239 ~L~PLL~ky~VdlYisGHDH~l 260 (394)
T PTZ00422 239 YLLPLLKDAQVDLYISGYDRNM 260 (394)
T ss_pred HHHHHHHHcCcCEEEEccccce
Confidence 6788999999999999998753
No 254
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=27.68 E-value=89 Score=39.30 Aligned_cols=67 Identities=21% Similarity=0.113 Sum_probs=38.5
Q ss_pred CCeEEEecCCCCHHHH----------------HHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh--------------
Q 002713 585 APVKVFGDLHGQFGDL----------------MRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------- 634 (889)
Q Consensus 585 ~~i~vvGDiHG~~~~l----------------~~il~~~g~~~~~~~~~~~~~vfLGD~vDRG~~s-------------- 634 (889)
-+|+-..||||++... ..+++...-... ..-+|..||++.--+..
T Consensus 116 LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~-----NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~ 190 (814)
T PRK11907 116 VRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENP-----NVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQ 190 (814)
T ss_pred EEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCC-----CEEEEecCCCCCCCcccchhhhccccccCcc
Confidence 4588899999996432 223333321111 12466699998654321
Q ss_pred HHHHHHHHHHhhcCCCcEEEecCCCcc
Q 002713 635 LETITLLLALKIEYPENVHLIRGNHEA 661 (889)
Q Consensus 635 ~evl~ll~~lk~~~p~~v~llrGNHE~ 661 (889)
.-++.+|-.|. -=.+..||||.
T Consensus 191 ~P~i~amN~LG-----yDA~tLGNHEF 212 (814)
T PRK11907 191 HPMYAALEALG-----FDAGTLGNHEF 212 (814)
T ss_pred hHHHHHHhccC-----CCEEEechhhc
Confidence 12555555553 34678899996
No 255
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.17 E-value=8.2e+02 Score=26.43 Aligned_cols=97 Identities=22% Similarity=0.310 Sum_probs=60.3
Q ss_pred CCcEEEEECCCC--cEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCC
Q 002713 74 TNSVHLYDVLTR--KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (889)
Q Consensus 74 ~ndv~~yD~~t~--~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~ 151 (889)
...+-.-|+.++ .|+.+- ..|...+++++++. +|.|-+ ...+|.++.++.+..|.-+.... -.
T Consensus 32 s~~~~avd~~sG~~~We~il------g~RiE~sa~vvgdf-VV~GCy------~g~lYfl~~~tGs~~w~f~~~~~--vk 96 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAIL------GVRIECSAIVVGDF-VVLGCY------SGGLYFLCVKTGSQIWNFVILET--VK 96 (354)
T ss_pred CceEEEecCCCCcEEeehhh------CceeeeeeEEECCE-EEEEEc------cCcEEEEEecchhheeeeeehhh--hc
Confidence 345666788775 688654 56888999999998 455544 34589999998866787663211 11
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEE
Q 002713 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQ 194 (889)
Q Consensus 152 ~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~ 194 (889)
....+ -.+.+.+| +|..|+ .+|.+|+.+..-.|.
T Consensus 97 --~~a~~-d~~~glIy-cgshd~-----~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 97 --VRAQC-DFDGGLIY-CGSHDG-----NFYALDPKTYGCVYK 130 (354)
T ss_pred --cceEE-cCCCceEE-EecCCC-----cEEEecccccceEEe
Confidence 11112 23344565 565554 578888887533454
No 256
>PRK04043 tolB translocation protein TolB; Provisional
Probab=26.33 E-value=1e+03 Score=27.37 Aligned_cols=191 Identities=12% Similarity=0.108 Sum_probs=97.3
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCc
Q 002713 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (889)
Q Consensus 75 ndv~~yD~~t~~W~~l~~~g~~P~~R~~haa~~~-~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R 153 (889)
.++|++|+.+++=+++..... ........- +.+|++.-... ...++|++|+.+.. ++++.. + +.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g----~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~--~~~LT~-~--~~-- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQG----MLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKT--LTQITN-Y--PG-- 277 (419)
T ss_pred CEEEEEECCCCcEEEEecCCC----cEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCc--EEEccc-C--CC--
Confidence 479999999887777753211 111111111 34565544321 24689999998865 777632 1 11
Q ss_pred cccEEEEEC-CcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCC--
Q 002713 154 YGHVMDLVS-QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGA-- 230 (889)
Q Consensus 154 ~~hs~~~~~-~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~-- 230 (889)
......... ++.||+.-...+ ..++|.+|+.++ ..+++...+. +.. ....+++.+++-....+..
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g--~~~rlt~~g~------~~~-~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSG--SVEQVVFHGK------NNS-SVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC---CceEEEEECCCC--CeEeCccCCC------cCc-eECCCCCEEEEEEcCCCcccC
Confidence 122222333 335555443322 368999999987 6666654321 112 2334555444444322211
Q ss_pred -cccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEecc
Q 002713 231 -PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRN 304 (889)
Q Consensus 231 -~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~ 304 (889)
...+++.++.... .+..+... ....+....-+++.+++-...+ + ...++.++.+...=..+.
T Consensus 346 ~~~~~I~v~d~~~g---~~~~LT~~---~~~~~p~~SPDG~~I~f~~~~~-~-----~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 346 KNTFNLYLISTNSD---YIRRLTAN---GVNQFPRFSSDGGSIMFIKYLG-N-----QSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCCcEEEEEECCCC---CeEECCCC---CCcCCeEECCCCCEEEEEEccC-C-----cEEEEEEecCCCeeEEee
Confidence 2357888887655 34444332 1222223333555444432211 1 346888888776555444
No 257
>smart00284 OLF Olfactomedin-like domains.
Probab=26.28 E-value=8.4e+02 Score=26.23 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=29.4
Q ss_pred CCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceE-EEEE
Q 002713 96 PPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFK-WHRV 143 (889)
Q Consensus 96 ~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~-W~~v 143 (889)
+|.+-.+-+.+++++.+|+.-. .+..+.+||+.+.+.. +..+
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL~t~~v~~~~~L 112 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDLTTETYQKEPLL 112 (255)
T ss_pred CCCccccccEEEECceEEEEec------CCccEEEEECCCCcEEEEEec
Confidence 4455666777888998888654 2467999999997643 4444
No 258
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=25.42 E-value=64 Score=34.64 Aligned_cols=70 Identities=27% Similarity=0.270 Sum_probs=42.9
Q ss_pred CeEEEec--CCCCHHHHHHHHHHhCCCCCCCCcceeeEEEecccc-CCCCC---------hHHHHHHHHHHhhcCCCcEE
Q 002713 586 PVKVFGD--LHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYV-DRGQH---------SLETITLLLALKIEYPENVH 653 (889)
Q Consensus 586 ~i~vvGD--iHG~~~~l~~il~~~g~~~~~~~~~~~~~vfLGD~v-DRG~~---------s~evl~ll~~lk~~~p~~v~ 653 (889)
++.|||| .+|.|..-+-.+....+-. .-++. -+|-+||-+ |-|.. +.|-+.---.|. ...+
T Consensus 45 sflvvGDwGr~g~~nqs~va~qmg~ige-~l~id--fvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQ----kpWy 117 (336)
T KOG2679|consen 45 SFLVVGDWGRRGSFNQSQVALQMGEIGE-KLDID--FVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQ----KPWY 117 (336)
T ss_pred EEEEEcccccCCchhHHHHHHHHHhHHH-hccce--EEEecCCcccccCCCCCCChhHHhhhhhcccCcccc----cchh
Confidence 5899999 7898877665554432211 11110 345599976 66653 444444444443 3578
Q ss_pred EecCCCccc
Q 002713 654 LIRGNHEAA 662 (889)
Q Consensus 654 llrGNHE~~ 662 (889)
.+.||||.+
T Consensus 118 ~vlGNHDyr 126 (336)
T KOG2679|consen 118 SVLGNHDYR 126 (336)
T ss_pred hhccCcccc
Confidence 999999974
No 259
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=25.34 E-value=86 Score=37.70 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=13.8
Q ss_pred HHHHhc---CCeEEEEecccc
Q 002713 776 DFCKRN---KLQLIIRAHECV 793 (889)
Q Consensus 776 ~fl~~~---~l~~iiR~H~~~ 793 (889)
++.++. ++++||=||+-.
T Consensus 236 ~la~~~~~~~IDvIlgGHsH~ 256 (551)
T PRK09558 236 EMARSLPAGGLDMIVGGHSQD 256 (551)
T ss_pred HHHHhCCccCceEEEeCCCCc
Confidence 455555 799999999864
No 260
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=24.29 E-value=7.2e+02 Score=27.17 Aligned_cols=125 Identities=16% Similarity=0.213 Sum_probs=63.8
Q ss_pred CcEEEEECCCC-----cEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCC
Q 002713 75 NSVHLYDVLTR-----KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQG 149 (889)
Q Consensus 75 ndv~~yD~~t~-----~W~~l~~~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~ 149 (889)
+.+++|+.... +++.+.... .+-.-++.+.+++++++.-| +.+++|++..++ ++... +..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~---~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~-~l~~~---~~~ 126 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTE---VKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSK-TLLKK---AFY 126 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEE---ESS-EEEEEEETTEEEEEET--------TEEEEEEEETTS-SEEEE---EEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEe---ecCcceEhhhhCCEEEEeec--------CEEEEEEccCcc-cchhh---hee
Confidence 77999999884 555553221 22234677778888777666 347888887754 35544 223
Q ss_pred CCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEcc
Q 002713 150 PGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGG 224 (889)
Q Consensus 150 p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG 224 (889)
..+-+-.++.+.++ .+++.--..+ -.++.|+.... +-..+... +.++..-++..+.++..++.+-
T Consensus 127 ~~~~~i~sl~~~~~-~I~vgD~~~s----v~~~~~~~~~~--~l~~va~d---~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 127 DSPFYITSLSVFKN-YILVGDAMKS----VSLLRYDEENN--KLILVARD---YQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp -BSSSEEEEEEETT-EEEEEESSSS----EEEEEEETTTE---EEEEEEE---SS-BEEEEEEEE-SSSEEEEEE
T ss_pred cceEEEEEEecccc-EEEEEEcccC----EEEEEEEccCC--EEEEEEec---CCCccEEEEEEecCCcEEEEEc
Confidence 33335555555565 6665322221 12334565443 34444432 2344333444442444555443
No 261
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=24.03 E-value=61 Score=35.04 Aligned_cols=39 Identities=28% Similarity=0.535 Sum_probs=26.4
Q ss_pred eEEEeccccCCCCChHHHH-HHHHHHhhcCCCcEEEecCCCccc
Q 002713 620 DYLFLGDYVDRGQHSLETI-TLLLALKIEYPENVHLIRGNHEAA 662 (889)
Q Consensus 620 ~~vfLGD~vDRG~~s~evl-~ll~~lk~~~p~~v~llrGNHE~~ 662 (889)
+++|+||+| |.-..+.| ..|-.||.+++..+.+ .|=|..
T Consensus 2 ~ilfiGDi~--G~~Gr~~l~~~L~~lk~~~~~D~vI--aNgEn~ 41 (266)
T TIGR00282 2 KFLFIGDVY--GKAGRKIVKNNLPQLKSKYQADLVI--ANGENT 41 (266)
T ss_pred eEEEEEecC--CHHHHHHHHHHHHHHHHhCCCCEEE--EcCccc
Confidence 789999999 44444443 5666788888766544 466664
No 262
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=23.93 E-value=5.1e+02 Score=28.00 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=64.7
Q ss_pred EECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEe
Q 002713 160 LVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLL 239 (889)
Q Consensus 160 ~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~ 239 (889)
..+++.+|..-|.-+. +.+.++|+.++ +-...... .++.+.-.+++.+++||..=-.+ .-.+.||
T Consensus 52 ~~~~g~LyESTG~yG~---S~l~~~d~~tg--~~~~~~~l----~~~~FgEGit~~~d~l~qLTWk~------~~~f~yd 116 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQ---SSLRKVDLETG--KVLQSVPL----PPRYFGEGITILGDKLYQLTWKE------GTGFVYD 116 (264)
T ss_dssp EEETTEEEEEECSTTE---EEEEEEETTTS--SEEEEEE-----TTT--EEEEEEETTEEEEEESSS------SEEEEEE
T ss_pred ecCCCEEEEeCCCCCc---EEEEEEECCCC--cEEEEEEC----CccccceeEEEECCEEEEEEecC------CeEEEEc
Confidence 3366788887776654 46778999997 33222222 34566777777888898876542 2356777
Q ss_pred cccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCe
Q 002713 240 MHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (889)
Q Consensus 240 ~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (889)
..+- +....- +.+..+-+.+.-+..|++.-| .+.++.+|+++.+
T Consensus 117 ~~tl---~~~~~~---~y~~EGWGLt~dg~~Li~SDG----------S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 117 PNTL---KKIGTF---PYPGEGWGLTSDGKRLIMSDG----------SSRLYFLDPETFK 160 (264)
T ss_dssp TTTT---EEEEEE---E-SSS--EEEECSSCEEEE-S----------SSEEEEE-TTT-S
T ss_pred cccc---eEEEEE---ecCCcceEEEcCCCEEEEECC----------ccceEEECCcccc
Confidence 6532 222211 234567788888889999888 4569999998654
No 263
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=23.72 E-value=3e+02 Score=23.88 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=47.9
Q ss_pred cCCeEEEecCCCCHHHHHHHHHHhCCC-CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCC
Q 002713 584 RAPVKVFGDLHGQFGDLMRLFDEYGFP-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 659 (889)
Q Consensus 584 ~~~i~vvGDiHG~~~~l~~il~~~g~~-~~~~~~~~~~~vfLGD~vDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 659 (889)
...+.|+=|---+.+.+..+++.+.-- +.. ..++.+|+.-|+|....+....+-.+...+...+++...|+
T Consensus 11 ~~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~-----~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 82 (91)
T PF02875_consen 11 PNGPTVIDDYAHNPDSIRALLEALKELYPKG-----RIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDNP 82 (91)
T ss_dssp ETTEEEEEET--SHHHHHHHHHHHHHHCTTS-----EEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSBT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHHHhccCC-----cEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCCC
Confidence 345777788777888888887776421 111 16788999999999888877777777777767766665554
No 264
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=23.63 E-value=1.4e+02 Score=34.62 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCeEEEEeccccccceEEecCCeEEEEecccccCCCCCCeEEEEEEcC
Q 002713 772 DRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGR 829 (889)
Q Consensus 772 ~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~ 829 (889)
..+++.+-++++++++=||.-.-+.+..-.+.++..-.- +.+|. ..++...+++..
T Consensus 322 ~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~-~~~~~-d~~aPvyI~~G~ 377 (452)
T KOG1378|consen 322 EGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWG-PVHLV-DGMAPIYITVGD 377 (452)
T ss_pred HHHHHHHHHhceeEEEeccceehhccchhhcceeeccCC-ccccc-CCCCCEEEEEcc
Confidence 369999999999999999997755555545555432221 23332 234444455543
No 265
>PTZ00421 coronin; Provisional
Probab=23.16 E-value=1.3e+03 Score=27.34 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=34.2
Q ss_pred CEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCC
Q 002713 110 TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (889)
Q Consensus 110 ~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~ 189 (889)
+.+++.||. ...+.++|+.+.+. -..+. + .. ..-.+++...++.+++.|+.|+ .+..||+.+.
T Consensus 138 ~~iLaSgs~------DgtVrIWDl~tg~~-~~~l~--~-h~--~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg 200 (493)
T PTZ00421 138 MNVLASAGA------DMVVNVWDVERGKA-VEVIK--C-HS--DQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDG 200 (493)
T ss_pred CCEEEEEeC------CCEEEEEECCCCeE-EEEEc--C-CC--CceEEEEEECCCCEEEEecCCC-----EEEEEECCCC
Confidence 356666663 24578899887431 11221 1 01 1112233334556777787764 5778898876
No 266
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=23.09 E-value=1.1e+03 Score=26.61 Aligned_cols=158 Identities=14% Similarity=0.110 Sum_probs=77.9
Q ss_pred CccCcEEEEEccCCceEEEEEeecCCCCCCccccE-EEEECCcEEEEEecCCCCcc------cCcEEEEecCCCCceEEE
Q 002713 123 HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHV-MDLVSQRYLVSVSGNDGKRV------LSDAWALDTAQKPYVWQR 195 (889)
Q Consensus 123 ~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~R~~hs-~~~~~~~~lyv~GG~~~~~~------lndv~~yd~~t~~~~W~~ 195 (889)
.-...++++|+.++...-..+ + ....+ ++...++..+++...+.... -..+|++.+.+..-.=..
T Consensus 147 ~e~~~l~v~Dl~tg~~l~d~i------~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~l 218 (414)
T PF02897_consen 147 SEWYTLRVFDLETGKFLPDGI------E--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDEL 218 (414)
T ss_dssp SSEEEEEEEETTTTEEEEEEE------E--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EE
T ss_pred CceEEEEEEECCCCcCcCCcc------c--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCee
Confidence 344568999999875222122 1 22222 44455544555555544333 678888888775211112
Q ss_pred ccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccceEEEecccC----CeeEEEeCCCCCCCccceeEEEEECCEE
Q 002713 196 LNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN----GQWEWTLAPGVAPSPRYQHAAVFVGARL 271 (889)
Q Consensus 196 v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~----~~W~w~~~~~~~p~~R~~hs~~~~~~~l 271 (889)
+-.....+. . +-.+....+++.+++.-..... .+++|.++.... ..|...... ..-..+.+...++.+
T Consensus 219 vfe~~~~~~-~-~~~~~~s~d~~~l~i~~~~~~~--~s~v~~~d~~~~~~~~~~~~~l~~~----~~~~~~~v~~~~~~~ 290 (414)
T PF02897_consen 219 VFEEPDEPF-W-FVSVSRSKDGRYLFISSSSGTS--ESEVYLLDLDDGGSPDAKPKLLSPR----EDGVEYYVDHHGDRL 290 (414)
T ss_dssp EEC-TTCTT-S-EEEEEE-TTSSEEEEEEESSSS--EEEEEEEECCCTTTSS-SEEEEEES----SSS-EEEEEEETTEE
T ss_pred EEeecCCCc-E-EEEEEecCcccEEEEEEEcccc--CCeEEEEeccccCCCcCCcEEEeCC----CCceEEEEEccCCEE
Confidence 222211111 1 3333344565555444322221 478898888753 344443331 122223344459999
Q ss_pred EEEcCCCCCCCCccCCCcEEEEECCCCe---EEe
Q 002713 272 HVTGGALRGGRAIEGEAAVAVLDTAAGV---WLD 302 (889)
Q Consensus 272 yV~GG~~~~~~~~~~~~~v~~yD~~t~~---W~~ 302 (889)
|+.-..... ...+..+++.... |..
T Consensus 291 yi~Tn~~a~------~~~l~~~~l~~~~~~~~~~ 318 (414)
T PF02897_consen 291 YILTNDDAP------NGRLVAVDLADPSPAEWWT 318 (414)
T ss_dssp EEEE-TT-T------T-EEEEEETTSTSGGGEEE
T ss_pred EEeeCCCCC------CcEEEEeccccccccccee
Confidence 998653221 4568889988765 664
No 267
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=22.94 E-value=8.6e+02 Score=27.92 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=61.2
Q ss_pred cEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCCCCcccce
Q 002713 156 HVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADA 235 (889)
Q Consensus 156 hs~~~~~~~~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~~~~~~dv 235 (889)
+.++...+|.++.-||.|..+. ++|+.+. .-...-. + ..+--++.....||..+..||.+. .-.+
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~R-----vWDlRtg--r~im~L~-g---H~k~I~~V~fsPNGy~lATgs~Dn----t~kV 371 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLGR-----VWDLRTG--RCIMFLA-G---HIKEILSVAFSPNGYHLATGSSDN----TCKV 371 (459)
T ss_pred ceeEecCCCceeeccCccchhh-----eeecccC--cEEEEec-c---cccceeeEeECCCceEEeecCCCC----cEEE
Confidence 3444556789999999886543 3566665 2221111 1 111123344457888888887544 3457
Q ss_pred EEEecccCCeeEEEeCCCCCCCccceeEEEE---ECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEEeccCCcc
Q 002713 236 YGLLMHRNGQWEWTLAPGVAPSPRYQHAAVF---VGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVT 308 (889)
Q Consensus 236 ~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~---~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~ 308 (889)
|.+...+. . ..+ |..+.--+-+- ..+++++..++++.. .+| .+..|+.+..+..
T Consensus 372 WDLR~r~~---l-y~i----pAH~nlVS~Vk~~p~~g~fL~TasyD~t~-------kiW----s~~~~~~~ksLaG 428 (459)
T KOG0272|consen 372 WDLRMRSE---L-YTI----PAHSNLVSQVKYSPQEGYFLVTASYDNTV-------KIW----STRTWSPLKSLAG 428 (459)
T ss_pred eeeccccc---c-eec----ccccchhhheEecccCCeEEEEcccCcce-------eee----cCCCcccchhhcC
Confidence 77766543 1 111 11111111111 257778887765422 132 2567777777643
No 268
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=22.17 E-value=1.3e+03 Score=28.23 Aligned_cols=121 Identities=18% Similarity=0.325 Sum_probs=65.3
Q ss_pred CCEEEEEcCcCCCCCccCcEEEEEccCCc----eEEEEEeecCCCC-CCccc-cEEEEECCcEEEEEecCCCCcccCcEE
Q 002713 109 GTMVVFQGGIGPAGHSTDDLYVLDLTNDK----FKWHRVVVQGQGP-GPRYG-HVMDLVSQRYLVSVSGNDGKRVLSDAW 182 (889)
Q Consensus 109 ~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~----~~W~~v~~~g~~p-~~R~~-hs~~~~~~~~lyv~GG~~~~~~lndv~ 182 (889)
++.+++-||.+ ..++++|.++.+ .+...+.. ...+ .++.. ++.+.-..+.+++-||.+ .++-
T Consensus 129 ~~~lvaSgGLD------~~IflWDin~~~~~l~~s~n~~t~-~sl~sG~k~siYSLA~N~t~t~ivsGgte-----k~lr 196 (735)
T KOG0308|consen 129 NNELVASGGLD------RKIFLWDINTGTATLVASFNNVTV-NSLGSGPKDSIYSLAMNQTGTIIVSGGTE-----KDLR 196 (735)
T ss_pred CceeEEecCCC------ccEEEEEccCcchhhhhhcccccc-ccCCCCCccceeeeecCCcceEEEecCcc-----cceE
Confidence 46788889964 346777776532 11122222 2222 33322 234344555788888865 4777
Q ss_pred EEecCCCCceEEEccCCCCCCCcccceEE-----EEecCCEEEEEccCCCCC-----CcccceEEEecccCCeeEEEeCC
Q 002713 183 ALDTAQKPYVWQRLNPEGDRPSARMYATA-----SARSDGMFLLCGGRDASG-----APLADAYGLLMHRNGQWEWTLAP 252 (889)
Q Consensus 183 ~yd~~t~~~~W~~v~~~~~~P~~r~~~~a-----~~~~~~~l~v~GG~~~~~-----~~~~dv~~l~~~~~~~W~w~~~~ 252 (889)
.||+.+.. ..+. -| +|+- .+..+|.=++.|+.++.- ..-.++..|..+..+.|.|...+
T Consensus 197 ~wDprt~~---kimk-------Lr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 197 LWDPRTCK---KIMK-------LR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred Eecccccc---ceee-------ee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 88998851 1111 11 3332 233566666666654431 11234556777888888887663
No 269
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=22.14 E-value=4.2e+02 Score=27.91 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=33.2
Q ss_pred CCcEEEecCCCccchhhhhcCChHHHHHHhCCCCchhhhhhhhhhcCCCceEEEEc-CeEEEecCCCCCC
Q 002713 649 PENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRS 717 (889)
Q Consensus 649 p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~-~~i~~vHgGi~~~ 717 (889)
-++|++|-||||.-. | |-+..-..+....+ ...| .....||++---. .+|+--|-||-.+
T Consensus 127 nknvvvlagnhein~-n---gny~arlanhkls~-gDTY----nlIKtldVC~YD~erkvltsHHGIird 187 (318)
T PF13258_consen 127 NKNVVVLAGNHEINF-N---GNYMARLANHKLSA-GDTY----NLIKTLDVCNYDPERKVLTSHHGIIRD 187 (318)
T ss_pred ccceEEEecCceecc-C---chHHHHHhhCCCCc-cchh----hccccccccccCcchhhhhcccCceec
Confidence 378999999999732 2 22222222221111 1223 3455677774443 4788888888654
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=21.89 E-value=1.3e+03 Score=26.98 Aligned_cols=197 Identities=16% Similarity=0.182 Sum_probs=88.7
Q ss_pred CCcEEEEECCCCcEEEecC-CCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEccCCceEEEEEeecCCCCCC
Q 002713 74 TNSVHLYDVLTRKWTRIRP-AGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (889)
Q Consensus 74 ~ndv~~yD~~t~~W~~l~~-~g~~P~~R~~haa~~~~~~Iyv~GG~~~~~~~~~dv~~yD~~t~~~~W~~v~~~g~~p~~ 152 (889)
-.|+|.|++.+++=.++.. .|..-.||..-..--+--..+.+| .+....|+|.++.+..+ =+++.--|.
T Consensus 58 ~DdlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~----ss~~taDly~v~~e~Ge--~kRiTyfGr---- 127 (668)
T COG4946 58 CDDLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLG----SSLQTADLYVVPSEDGE--AKRITYFGR---- 127 (668)
T ss_pred chHHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEec----CCCccccEEEEeCCCCc--EEEEEEecc----
Confidence 3567777777666555542 222222333322111111111222 22456789999998866 555544442
Q ss_pred ccccEEEEECCcEEEEEecCCCCcccC---cEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCCC-
Q 002713 153 RYGHVMDLVSQRYLVSVSGNDGKRVLS---DAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS- 228 (889)
Q Consensus 153 R~~hs~~~~~~~~lyv~GG~~~~~~ln---dv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~~- 228 (889)
|..-.+....++.++|.- +-..++. .+|..+.... ....+ +..-.+..++.|+++++ |--.-+
T Consensus 128 ~fT~VaG~~~dg~iiV~T--D~~tPF~q~~~lYkv~~dg~--~~e~L--------nlGpathiv~~dg~ivi-gRntydL 194 (668)
T COG4946 128 RFTRVAGWIPDGEIIVST--DFHTPFSQWTELYKVNVDGI--KTEPL--------NLGPATHIVIKDGIIVI-GRNTYDL 194 (668)
T ss_pred ccceeeccCCCCCEEEEe--ccCCCcccceeeeEEccCCc--eeeec--------cCCceeeEEEeCCEEEE-ccCcccC
Confidence 222233344556666642 2222222 2233322221 22222 22224556778885555 421111
Q ss_pred -------CCcccceEEEecccCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcCCCCCCCCccCCCcEEEEECCCCeEE
Q 002713 229 -------GAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWL 301 (889)
Q Consensus 229 -------~~~~~dv~~l~~~~~~~W~w~~~~~~~p~~R~~hs~~~~~~~lyV~GG~~~~~~~~~~~~~v~~yD~~t~~W~ 301 (889)
+-....+|.-.......=..+.+.+.. .+-+.+++++|.+--..+ ...++.-|+..+.-+
T Consensus 195 P~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~v------S~PmIV~~RvYFlsD~eG-------~GnlYSvdldGkDlr 261 (668)
T COG4946 195 PHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNV------SSPMIVGERVYFLSDHEG-------VGNLYSVDLDGKDLR 261 (668)
T ss_pred cccccccCCccceEEEEecCCcceeeeeecCCCc------CCceEEcceEEEEecccC-------ccceEEeccCCchhh
Confidence 112333443332221011122222222 123567999999865433 334777788776655
Q ss_pred eccCC
Q 002713 302 DRNGL 306 (889)
Q Consensus 302 ~v~~~ 306 (889)
+....
T Consensus 262 rHTnF 266 (668)
T COG4946 262 RHTNF 266 (668)
T ss_pred hcCCc
Confidence 55444
No 271
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=21.38 E-value=5.6e+02 Score=25.87 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=59.0
Q ss_pred ccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCC----------------------
Q 002713 555 RFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPST---------------------- 612 (889)
Q Consensus 555 ~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~l~~il~~~g~~~~---------------------- 612 (889)
...+++++|.+-|.+..+.+.++-.= ...++||=++|.+--+-.++..+.++.+
T Consensus 9 evLisee~I~~ri~ela~~I~~~y~g----~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~ 84 (178)
T COG0634 9 EVLISEEQIKARIKELAAQITEDYGG----KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKIL 84 (178)
T ss_pred eEeeCHHHHHHHHHHHHHHHHHhhCC----CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEe
Confidence 46789999999888887777665322 5688999999999877777777666532
Q ss_pred ---CCCcceeeEEEeccccCCCCChHHHHHHHH
Q 002713 613 ---AGDITYIDYLFLGDYVDRGQHSLETITLLL 642 (889)
Q Consensus 613 ---~~~~~~~~~vfLGD~vDRG~~s~evl~ll~ 642 (889)
+.++...+++.+=|++|-|.-=-++..+|.
T Consensus 85 kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~ 117 (178)
T COG0634 85 KDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLK 117 (178)
T ss_pred cccccCCCCCeEEEEecccccChhHHHHHHHHH
Confidence 112223378999999998865444444443
No 272
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=20.41 E-value=7.6e+02 Score=28.34 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=31.6
Q ss_pred CCCCcccccceeecCCC-CCCCcccceEEEeccccCCCCEEEEEcCCC
Q 002713 9 PAPSYRTLETYWDTDED-APGPRCGHTLTAVAATKTTGPRLILFGGAT 55 (889)
Q Consensus 9 ~~~~yd~~~~~w~~~~~-~P~pR~ght~~~i~~~~~~~~~lyvfGG~~ 55 (889)
.+.|||...+.|..... --.---||+.-+..-....++.|+.-||..
T Consensus 277 ~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD 324 (459)
T KOG0272|consen 277 GTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD 324 (459)
T ss_pred eecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCcc
Confidence 47899999999985432 222334776655544444588899999875
No 273
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=20.04 E-value=8.2e+02 Score=29.29 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=34.8
Q ss_pred CCCCccccEEEEECCc-EEEEEecCCCCcccCcEEEEecCCCCceEEEccCCCCCCCcccceEEEEecCCEEEEEccCCC
Q 002713 149 GPGPRYGHVMDLVSQR-YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA 227 (889)
Q Consensus 149 ~p~~R~~hs~~~~~~~-~lyv~GG~~~~~~lndv~~yd~~t~~~~W~~v~~~~~~P~~r~~~~a~~~~~~~l~v~GG~~~ 227 (889)
+-.|+++..++...-. -||+.|- -.+||+||++.+ +|-.--.. + .+...+.... .-.-|+.+||.++
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqG--rfL~P~~~-~--~~~lN~v~in-~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQG--RFLNPFET-D--SGELNVVSIN-EEHGLLACGTEDG 197 (703)
T ss_pred eecCcCCccccccCCCccEEEeec------CcceEEEEcccc--cccccccc-c--cccceeeeec-CccceEEecccCc
Confidence 3456666666555322 3554442 258999999998 66432211 0 1222222222 2235788887533
Done!