BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002714
(889 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y2L5|TPPC8_HUMAN Trafficking protein particle complex subunit 8 OS=Homo sapiens
GN=TRAPPC8 PE=1 SV=2
Length = 1435
Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 203/781 (25%), Positives = 332/781 (42%), Gaps = 150/781 (19%)
Query: 20 MENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLE 78
M+ A TY I A RC L E+LK++ +Y +AA + R+ E+ L SA++LE
Sbjct: 485 MDTAIQTYRDI-CKNMVLAERCVLLSAELLKSQSKYSEAAALLIRLTSEDSDLRSALLLE 543
Query: 79 QASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHV 138
QA++C++ K PM+ KY FH++L+G R+ K Q HA+R Y A+ VYKG WS +DH+
Sbjct: 544 QAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHI 603
Query: 139 HFHIGQWYAVLGMHDIAVA---HMLEKTGKT------------FEVVK-----------P 172
+F IG+ L D AV+ H+L K V K P
Sbjct: 604 NFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVSQLSPDGPLP 663
Query: 173 RLPI--INISSLKVIFEDHRTYASAEA-ANVRESL-----------WRSLEEDMIPSLST 218
+LP+ IN S+ +V F R A E A SL WR LEE ++ ++
Sbjct: 664 QLPLPYINSSATRVFFGHDRRPADGEKQAATHVSLDQEYDSESSQQWRELEEQVVSVVNK 723
Query: 219 A--RSNWLELQSKLIMKKFEESN---ICVAGEPVKVDIEFKNPLQIPISISNISLICELS 273
SN+ Q + + +++ + V EP+ V++ F+NPL++ + ++++SL+ +
Sbjct: 724 GVIPSNFHPTQ--YCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVLLLLTDLSLLWKFH 781
Query: 274 TRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMV 333
+ D D N+E +L+T+ EM + +SE I+ G E+ + +L +
Sbjct: 782 PK-DFSGKD---------NEEVKQLVTSEPEM---IGAEVISEFLIN--GEESKVARLKL 826
Query: 334 TPKVEGILKIVGVRWRLS-----------GSLVGVYNFESNL---VKKK----------- 368
P G L I+GV + L G+L G + + +L V+ K
Sbjct: 827 FPHHIGELHILGVVYNLGTIQGSMTVDGIGALPGCHTGKYSLSMSVRGKQDLEIQGPRLN 886
Query: 369 -IAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVK 427
+ + VK P L I+ + +P LE P G++R +E N S +
Sbjct: 887 NTKEEKTSVKYGPDRRLDPIITEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLT 946
Query: 428 NLKMKVSHPRFLSIGN-------------------RDDMTKEFPACLQKMTNAEQSVAGG 468
LK+ P F + G + +T C +++A G
Sbjct: 947 GLKVVSKRPEFFTFGGNTAVLTPLSPSASENCSAYKTVVTDATSVCTALISSASSVDFGI 1006
Query: 469 NFNKMPQAV-FSFPEGISIQGETPLLWPLWYRAA-VPGKISLSITIYYEMGDVSSVIKYR 526
P+ + P+ + + G + L P+W R G ++ YYE I++R
Sbjct: 1007 GTGSQPEVIPVPLPDTVLLPGASVQL-PMWLRGPDEEGVHEINFLFYYESVKKQPKIRHR 1065
Query: 527 LLRMHYNLEVLPSLNVSFQISPWSS------RLQQYLVRMDVVNQTSSE----NFQIHQL 576
+LR + SLNV + +S R LV +DV N +SE F I Q+
Sbjct: 1066 ILRHTAIICTSRSLNVRATVCRSNSLENEEGRGGNMLVFVDVENTNTSEAGVKEFHIVQV 1125
Query: 577 SSVGHQWE----ISLLQPFDSIFPS--ESLFAGQALSCFFMLKNRGESST-SSDDTSSPS 629
SS W+ ++L + D+ S + F +A+ C + E++T SS+ +
Sbjct: 1126 SSSSKHWKLQKSVNLSENKDTKLASREKGKFCFKAIRC-----EKEEAATQSSEKYTFAD 1180
Query: 630 RLLGSD---VSLQGTADTLFDISGSPLADFHAH-------------ERLLQRVSQDDTNT 673
+ G++ S AD + S L AH RL+Q+ S+ D N
Sbjct: 1181 IIFGNEQIISSASPCADFFYRSLSSELKKPQAHLPVHTEKQSTEDAVRLIQKCSEVDLNI 1240
Query: 674 V 674
V
Sbjct: 1241 V 1241
>sp|Q25132|LHX3_HALRO LIM/homeobox protein Lhx3 OS=Halocynthia roretzi GN=LHX3 PE=2 SV=2
Length = 692
Score = 37.0 bits (84), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 680 SQPSKSDSDSGISDPQHLFSHHACHCSIL---GKTPITWLVDGPRTLHHNFNASFCEVNL 736
S P S + +SD HLFS ++ H S + GK+ ++L PR ++ N N
Sbjct: 159 SSPENMTSFNPMSDSSHLFSDYSKHNSTILANGKSGTSYLTSTPRRIYDNTNMINIPEET 218
Query: 737 KM--TIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVT 794
K T YN ++ + FD+P SSG TSP + + + D K+
Sbjct: 219 KNIPTCYNGNNHVPSESI--FDNPLSSGANRRMTSPGHKIQPSTCSDMLFTLLAKDNKIE 276
Query: 795 SQLP 798
+++P
Sbjct: 277 AEIP 280
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3
PE=1 SV=1
Length = 1050
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 159 MLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLST 218
LEK P++P I+++S +V+FE +++ + + E + S E +IP LS+
Sbjct: 440 FLEKKIDEHFKTSPKIPGIDLNSTRVLFEK---LMNSQHSMILEQILNSFESCLIPQLSS 496
Query: 219 ARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISL 268
+ + ++ LI+ +F P+ D ++ L IP++++ + L
Sbjct: 497 SPPDVEAMRIYLILPEF----------PLLQDSKYYITLTIPLAMAILRL 536
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,344,012
Number of Sequences: 539616
Number of extensions: 13058367
Number of successful extensions: 32039
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 31991
Number of HSP's gapped (non-prelim): 55
length of query: 889
length of database: 191,569,459
effective HSP length: 127
effective length of query: 762
effective length of database: 123,038,227
effective search space: 93755128974
effective search space used: 93755128974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)