Query 002714
Match_columns 889
No_of_seqs 188 out of 241
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1938 Protein with predicted 100.0 7.1E-73 1.5E-77 661.6 8.2 695 1-840 221-960 (960)
2 PF08626 TRAPPC9-Trs120: Trans 100.0 2.6E-25 5.6E-30 282.8 60.2 530 14-616 355-1010(1185)
3 PF12739 TRAPPC-Trs85: ER-Golg 100.0 1.4E-29 3.1E-34 289.7 11.4 139 1-140 253-414 (414)
4 KOG1953 Targeting complex (TRA 99.8 4.1E-17 8.8E-22 191.9 35.6 285 238-568 686-1001(1235)
5 PF07919 Gryzun: Gryzun, putat 99.2 1.2E-06 2.5E-11 104.6 48.9 505 240-853 22-552 (554)
6 PF06159 DUF974: Protein of un 97.9 0.0016 3.5E-08 70.4 21.7 183 405-617 9-210 (249)
7 PF14938 SNAP: Soluble NSF att 97.4 0.0023 4.9E-08 70.3 14.7 144 14-161 32-180 (282)
8 COG1470 Predicted membrane pro 97.1 0.055 1.2E-06 62.1 20.4 124 317-501 325-453 (513)
9 KOG1586 Protein required for f 95.8 0.037 8.1E-07 58.6 8.5 105 54-161 29-139 (288)
10 KOG1586 Protein required for f 95.5 0.18 4E-06 53.6 12.3 146 10-159 26-177 (288)
11 PF00927 Transglut_C: Transglu 95.5 0.15 3.3E-06 47.7 10.8 90 240-358 10-101 (107)
12 PF14938 SNAP: Soluble NSF att 95.4 0.069 1.5E-06 58.6 9.4 87 72-161 53-140 (282)
13 PF10633 NPCBM_assoc: NPCBM-as 94.6 0.11 2.3E-06 46.0 6.7 72 408-514 3-77 (78)
14 PF14874 PapD-like: Flagellar- 94.4 0.37 8E-06 44.4 10.1 86 393-516 2-90 (102)
15 PF07705 CARDB: CARDB; InterP 93.5 0.58 1.3E-05 42.3 9.5 85 393-515 2-86 (101)
16 PF11817 Foie-gras_1: Foie gra 91.6 0.74 1.6E-05 49.7 8.8 86 74-161 158-243 (247)
17 PF13424 TPR_12: Tetratricopep 91.3 0.47 1E-05 41.0 5.7 61 101-161 10-71 (78)
18 TIGR02521 type_IV_pilW type IV 89.5 7.1 0.00015 39.3 13.5 114 40-161 66-194 (234)
19 PF00635 Motile_Sperm: MSP (Ma 88.8 1.3 2.7E-05 41.1 6.8 54 409-501 17-70 (109)
20 PF09976 TPR_21: Tetratricopep 88.7 6.4 0.00014 38.5 12.1 98 24-122 34-144 (145)
21 KOG2625 Uncharacterized conser 88.6 2.4 5.3E-05 44.5 9.1 315 405-857 10-332 (348)
22 PRK15179 Vi polysaccharide bio 88.5 4.2 9.1E-05 50.5 12.8 114 39-161 86-213 (694)
23 PRK11447 cellulose synthase su 88.5 3.8 8.2E-05 54.0 13.2 112 42-161 388-520 (1157)
24 TIGR02795 tol_pal_ybgF tol-pal 88.3 6.9 0.00015 35.7 11.4 59 100-161 43-101 (119)
25 PRK15174 Vi polysaccharide exp 88.0 8.3 0.00018 47.7 15.0 53 103-161 291-343 (656)
26 PF13432 TPR_16: Tetratricopep 86.9 1.4 3E-05 36.7 5.2 54 102-161 3-56 (65)
27 KOG1840 Kinesin light chain [C 86.8 19 0.0004 43.3 16.3 143 16-161 218-392 (508)
28 TIGR03302 OM_YfiO outer membra 86.4 18 0.00038 38.0 14.5 121 37-160 68-227 (235)
29 PLN03088 SGT1, suppressor of 86.4 4.6 9.9E-05 46.1 10.7 86 47-161 10-95 (356)
30 PF13414 TPR_11: TPR repeat; P 86.3 1.5 3.2E-05 36.8 5.1 57 99-161 6-63 (69)
31 TIGR00990 3a0801s09 mitochondr 85.9 10 0.00023 46.2 14.2 134 18-161 308-458 (615)
32 PRK12370 invasion protein regu 85.9 11 0.00025 45.4 14.4 108 45-161 344-466 (553)
33 TIGR00990 3a0801s09 mitochondr 85.7 11 0.00024 45.9 14.3 112 43-161 369-492 (615)
34 PRK11788 tetratricopeptide rep 85.6 12 0.00025 42.3 13.6 116 40-161 108-239 (389)
35 PRK10370 formate-dependent nit 85.6 12 0.00026 39.1 12.5 62 94-161 106-169 (198)
36 PF05753 TRAP_beta: Translocon 85.5 7.4 0.00016 40.3 10.7 95 391-518 19-116 (181)
37 PF09295 ChAPs: ChAPs (Chs5p-A 84.7 7.2 0.00016 45.3 11.3 57 96-160 234-292 (395)
38 PRK15359 type III secretion sy 84.6 7.3 0.00016 38.4 9.9 87 46-161 31-117 (144)
39 TIGR02552 LcrH_SycD type III s 84.6 10 0.00022 35.9 10.7 93 40-161 18-110 (135)
40 cd00189 TPR Tetratricopeptide 84.1 8.6 0.00019 31.7 9.0 88 45-161 6-93 (100)
41 CHL00033 ycf3 photosystem I as 83.9 7.7 0.00017 38.8 10.0 95 43-159 39-136 (168)
42 TIGR02521 type_IV_pilW type IV 82.0 21 0.00046 35.8 12.5 118 39-161 31-160 (234)
43 PRK09782 bacteriophage N4 rece 81.5 12 0.00027 48.4 12.7 106 48-161 585-702 (987)
44 PRK11788 tetratricopeptide rep 81.3 25 0.00055 39.5 14.0 119 41-161 71-205 (389)
45 TIGR02917 PEP_TPR_lipo putativ 81.0 16 0.00036 44.9 13.3 29 97-125 126-154 (899)
46 TIGR02917 PEP_TPR_lipo putativ 80.9 19 0.00042 44.3 13.9 114 39-159 125-250 (899)
47 PRK11447 cellulose synthase su 80.6 13 0.00028 49.2 12.7 54 102-161 357-410 (1157)
48 KOG1173 Anaphase-promoting com 79.7 12 0.00026 44.6 10.6 57 99-161 458-514 (611)
49 PRK02603 photosystem I assembl 79.2 6.9 0.00015 39.4 7.7 82 74-161 16-97 (172)
50 PF13424 TPR_12: Tetratricopep 78.5 11 0.00025 32.3 7.8 75 37-127 3-77 (78)
51 PF01345 DUF11: Domain of unkn 77.9 8.9 0.00019 33.4 7.0 52 390-441 21-72 (76)
52 KOG2076 RNA polymerase III tra 77.4 19 0.00042 45.0 11.8 128 15-161 138-266 (895)
53 PF12895 Apc3: Anaphase-promot 77.4 8.5 0.00018 33.8 6.8 52 103-161 32-83 (84)
54 PF14646 MYCBPAP: MYCBP-associ 77.3 16 0.00034 42.9 10.9 84 407-517 244-328 (426)
55 KOG1938 Protein with predicted 75.3 1.6 3.5E-05 54.5 2.1 118 21-138 631-772 (960)
56 KOG1840 Kinesin light chain [C 75.3 46 0.00099 40.0 14.0 141 14-159 300-473 (508)
57 KOG1585 Protein required for f 74.5 25 0.00054 38.3 10.3 139 16-161 30-175 (308)
58 PF10633 NPCBM_assoc: NPCBM-as 74.5 18 0.0004 31.7 8.1 67 242-344 2-72 (78)
59 PRK15174 Vi polysaccharide exp 74.3 33 0.00072 42.5 13.1 49 100-154 216-264 (656)
60 PRK09782 bacteriophage N4 rece 73.7 43 0.00092 43.6 14.2 50 104-159 617-666 (987)
61 PF09986 DUF2225: Uncharacteri 73.5 14 0.00031 39.2 8.4 69 93-161 115-190 (214)
62 PF13584 BatD: Oxygen toleranc 73.1 1.8E+02 0.004 34.4 18.6 101 319-425 187-303 (484)
63 KOG1155 Anaphase-promoting com 72.7 55 0.0012 38.6 13.2 56 100-161 436-491 (559)
64 KOG1155 Anaphase-promoting com 72.5 12 0.00027 43.7 8.0 53 103-161 405-457 (559)
65 PF13429 TPR_15: Tetratricopep 72.5 11 0.00023 41.0 7.5 68 94-161 144-239 (280)
66 PF14559 TPR_19: Tetratricopep 72.2 8.3 0.00018 32.1 5.2 49 107-161 2-50 (68)
67 PRK12370 invasion protein regu 72.2 31 0.00067 41.7 12.0 52 103-160 379-430 (553)
68 COG1470 Predicted membrane pro 72.1 2.2E+02 0.0047 33.9 28.6 48 317-365 37-88 (513)
69 COG1361 S-layer domain [Cell e 71.7 2.2E+02 0.0048 33.9 23.6 132 401-567 158-295 (500)
70 cd05804 StaR_like StaR_like; a 70.9 26 0.00056 39.0 10.3 63 97-161 149-211 (355)
71 PF07719 TPR_2: Tetratricopept 70.4 8.2 0.00018 27.4 4.1 30 98-127 3-32 (34)
72 PRK11189 lipoprotein NlpI; Pro 70.3 82 0.0018 34.8 13.9 115 43-161 102-261 (296)
73 PRK15363 pathogenicity island 69.6 19 0.00042 36.5 7.8 84 20-127 51-134 (157)
74 PF03896 TRAP_alpha: Transloco 69.4 76 0.0016 35.4 13.1 84 404-518 93-181 (285)
75 PRK10803 tol-pal system protei 69.2 34 0.00073 37.6 10.4 58 101-161 185-242 (263)
76 PRK10049 pgaA outer membrane p 69.0 49 0.0011 41.8 13.1 129 21-160 32-174 (765)
77 cd00189 TPR Tetratricopeptide 68.1 13 0.00028 30.6 5.6 55 101-161 5-59 (100)
78 PF07705 CARDB: CARDB; InterP 67.8 79 0.0017 28.1 11.0 67 239-344 13-80 (101)
79 PRK11189 lipoprotein NlpI; Pro 67.4 50 0.0011 36.5 11.5 30 41-70 66-95 (296)
80 PF13371 TPR_9: Tetratricopept 67.4 17 0.00038 30.5 6.2 52 104-161 3-54 (73)
81 PF12690 BsuPI: Intracellular 66.7 17 0.00036 32.7 6.1 72 734-848 2-80 (82)
82 PRK02603 photosystem I assembl 66.5 28 0.00061 35.0 8.6 69 41-129 37-105 (172)
83 KOG0439 VAMP-associated protei 66.1 23 0.00049 37.3 8.1 70 410-518 25-98 (218)
84 TIGR02795 tol_pal_ybgF tol-pal 65.2 25 0.00053 31.9 7.2 59 100-161 6-64 (119)
85 PF13584 BatD: Oxygen toleranc 64.3 1.2E+02 0.0025 36.1 14.4 87 325-424 71-157 (484)
86 smart00809 Alpha_adaptinC2 Ada 64.0 69 0.0015 29.3 10.0 74 409-517 17-90 (104)
87 TIGR03302 OM_YfiO outer membra 63.9 34 0.00075 35.7 9.0 68 91-161 28-95 (235)
88 PF12688 TPR_5: Tetratrico pep 63.0 94 0.002 30.0 10.9 98 41-161 3-100 (120)
89 cd05804 StaR_like StaR_like; a 62.7 93 0.002 34.5 12.6 111 44-161 48-173 (355)
90 PRK15359 type III secretion sy 62.4 37 0.0008 33.4 8.3 82 21-126 41-122 (144)
91 KOG3616 Selective LIM binding 62.3 16 0.00035 44.7 6.4 80 73-161 647-731 (1636)
92 TIGR01451 B_ant_repeat conserv 61.9 18 0.00038 29.8 4.9 40 403-442 5-44 (53)
93 CHL00033 ycf3 photosystem I as 61.7 30 0.00066 34.5 7.7 66 92-161 32-97 (168)
94 PF12690 BsuPI: Intracellular 61.0 52 0.0011 29.6 8.2 71 247-344 2-81 (82)
95 PRK04841 transcriptional regul 60.9 1.4E+02 0.003 38.1 15.2 60 101-161 578-637 (903)
96 PF00515 TPR_1: Tetratricopept 59.7 10 0.00023 27.2 2.9 26 101-126 6-31 (34)
97 PF12742 Gryzun-like: Gryzun, 59.5 20 0.00044 30.1 4.8 42 811-852 15-56 (57)
98 KOG2076 RNA polymerase III tra 59.2 33 0.00073 43.1 8.6 88 43-160 418-507 (895)
99 PRK10049 pgaA outer membrane p 59.2 95 0.0021 39.2 13.1 56 100-161 363-418 (765)
100 PF12584 TRAPPC10: Trafficking 58.9 45 0.00098 33.1 8.3 34 318-351 80-113 (147)
101 KOG4626 O-linked N-acetylgluco 58.4 98 0.0021 37.9 11.8 16 16-31 196-211 (966)
102 PF13176 TPR_7: Tetratricopept 57.8 12 0.00025 27.9 2.9 26 102-127 5-30 (36)
103 KOG0553 TPR repeat-containing 56.9 47 0.001 37.0 8.5 90 18-137 95-188 (304)
104 PF12735 Trs65: TRAPP traffick 56.2 1.5E+02 0.0033 33.2 12.7 127 712-854 157-288 (306)
105 PLN03098 LPA1 LOW PSII ACCUMUL 55.8 25 0.00053 41.4 6.5 63 94-161 74-137 (453)
106 PF10300 DUF3808: Protein of u 55.8 18 0.00039 42.9 5.6 68 92-161 263-330 (468)
107 KOG4626 O-linked N-acetylgluco 54.0 1E+02 0.0023 37.7 11.1 133 19-161 267-413 (966)
108 KOG4386 Uncharacterized conser 53.6 45 0.00097 39.6 7.9 117 674-857 660-777 (809)
109 PF07719 TPR_2: Tetratricopept 52.0 22 0.00047 25.2 3.5 24 138-161 3-26 (34)
110 PRK04841 transcriptional regul 51.3 2.5E+02 0.0054 35.8 15.2 63 99-161 694-756 (903)
111 PF09478 CBM49: Carbohydrate b 51.2 45 0.00097 29.6 6.1 26 410-435 17-42 (80)
112 KOG1125 TPR repeat-containing 51.0 46 0.001 40.0 7.7 75 77-161 446-523 (579)
113 TIGR02552 LcrH_SycD type III s 49.9 46 0.00099 31.3 6.5 60 96-161 17-76 (135)
114 PF11817 Foie-gras_1: Foie gra 49.3 27 0.00058 37.8 5.2 52 110-161 152-203 (247)
115 KOG2002 TPR-containing nuclear 49.2 56 0.0012 41.6 8.4 130 20-159 215-365 (1018)
116 PF06030 DUF916: Bacterial pro 49.1 48 0.001 32.0 6.4 78 733-842 28-105 (121)
117 PF13429 TPR_15: Tetratricopep 48.1 64 0.0014 34.9 8.0 109 38-158 145-270 (280)
118 PRK13202 ureB urease subunit b 47.2 46 0.001 31.3 5.5 73 401-498 10-84 (104)
119 PF13181 TPR_8: Tetratricopept 47.1 30 0.00066 24.6 3.6 29 99-127 4-32 (34)
120 PRK10803 tol-pal system protei 46.7 1E+02 0.0022 33.8 9.2 73 37-129 178-250 (263)
121 PF09976 TPR_21: Tetratricopep 46.4 1.1E+02 0.0023 29.8 8.6 69 88-159 40-108 (145)
122 PF08626 TRAPPC9-Trs120: Trans 46.4 4.9E+02 0.011 34.9 17.0 33 808-840 1152-1185(1185)
123 PF13181 TPR_8: Tetratricopept 46.0 32 0.0007 24.4 3.6 25 137-161 2-26 (34)
124 PLN03088 SGT1, suppressor of 44.4 83 0.0018 35.9 8.5 85 20-128 18-102 (356)
125 COG5010 TadD Flp pilus assembl 43.9 2.2E+02 0.0049 31.2 11.0 59 96-161 135-193 (257)
126 TIGR00540 hemY_coli hemY prote 43.6 2.6E+02 0.0055 32.4 12.5 66 94-160 262-359 (409)
127 TIGR03079 CH4_NH3mon_ox_B meth 43.4 81 0.0018 36.1 7.8 76 408-501 280-355 (399)
128 PF13414 TPR_11: TPR repeat; P 43.1 91 0.002 25.8 6.6 60 43-125 7-67 (69)
129 PF13374 TPR_10: Tetratricopep 42.6 43 0.00094 24.6 4.0 31 99-129 5-35 (42)
130 smart00769 WHy Water Stress an 42.2 57 0.0012 30.0 5.6 29 244-272 14-42 (100)
131 PF07919 Gryzun: Gryzun, putat 42.1 87 0.0019 37.6 8.6 70 240-346 480-550 (554)
132 PF05506 DUF756: Domain of unk 42.0 88 0.0019 28.2 6.6 21 735-755 21-41 (89)
133 KOG1126 DNA-binding cell divis 41.8 1.5E+02 0.0032 36.5 10.1 140 18-161 435-616 (638)
134 PF04744 Monooxygenase_B: Mono 41.6 74 0.0016 36.4 7.2 87 395-500 249-335 (381)
135 PF14649 Spatacsin_C: Spatacsi 41.0 1.2E+02 0.0026 33.9 8.8 97 18-125 103-204 (296)
136 PF14874 PapD-like: Flagellar- 40.8 1.2E+02 0.0026 27.6 7.5 69 237-342 12-81 (102)
137 KOG2002 TPR-containing nuclear 40.4 1.7E+02 0.0036 37.6 10.5 84 99-188 274-357 (1018)
138 PRK10370 formate-dependent nit 40.1 2.9E+02 0.0063 28.7 11.1 60 95-161 73-135 (198)
139 PF10602 RPN7: 26S proteasome 39.9 53 0.0011 33.8 5.4 56 103-161 43-98 (177)
140 PF09986 DUF2225: Uncharacteri 37.6 1.2E+02 0.0027 32.2 7.9 70 60-130 125-199 (214)
141 cd02683 MIT_1 MIT: domain cont 37.2 44 0.00094 29.7 3.7 33 96-128 6-38 (77)
142 PF11614 FixG_C: IG-like fold 37.1 1.4E+02 0.003 28.2 7.5 55 735-844 34-88 (118)
143 PF04212 MIT: MIT (microtubule 36.8 53 0.0011 28.1 4.1 33 95-127 4-36 (69)
144 PRK15363 pathogenicity island 36.6 2.5E+02 0.0054 28.6 9.4 88 44-161 40-128 (157)
145 PF13428 TPR_14: Tetratricopep 36.6 48 0.001 25.5 3.5 27 102-128 7-33 (44)
146 PLN03098 LPA1 LOW PSII ACCUMUL 36.4 1.1E+02 0.0024 36.1 7.8 61 44-126 80-142 (453)
147 PF06030 DUF916: Bacterial pro 36.0 4.1E+02 0.0089 25.7 10.6 84 241-338 23-106 (121)
148 COG1729 Uncharacterized protei 35.8 1.8E+02 0.0038 32.1 8.8 85 20-129 160-248 (262)
149 PF13598 DUF4139: Domain of un 35.2 2.8E+02 0.0061 30.8 10.7 77 730-843 240-316 (317)
150 PRK05089 cytochrome C oxidase 35.1 99 0.0022 32.3 6.4 42 387-431 72-115 (188)
151 TIGR03769 P_ac_wall_RPT actino 35.0 20 0.00044 28.1 1.1 21 836-857 5-25 (41)
152 PRK15331 chaperone protein Sic 34.8 1.3E+02 0.0029 30.8 7.2 26 99-124 108-133 (165)
153 PF14796 AP3B1_C: Clathrin-ada 34.6 1.1E+02 0.0023 30.8 6.3 31 405-435 80-110 (145)
154 PTZ00128 cytochrome c oxidase 34.5 93 0.002 33.6 6.3 41 388-431 117-159 (232)
155 COG3175 COX11 Cytochrome oxida 33.9 1.8E+02 0.0038 30.3 7.8 26 405-430 88-113 (195)
156 KOG1173 Anaphase-promoting com 33.9 89 0.0019 37.7 6.5 65 91-161 341-405 (611)
157 PF11614 FixG_C: IG-like fold 33.8 2E+02 0.0044 27.1 8.0 72 406-514 26-102 (118)
158 PF03168 LEA_2: Late embryogen 33.8 2.2E+02 0.0047 25.3 8.0 52 250-334 1-52 (101)
159 PF02883 Alpha_adaptinC2: Adap 32.6 2.6E+02 0.0057 26.0 8.6 77 407-518 21-102 (115)
160 PF00515 TPR_1: Tetratricopept 32.2 68 0.0015 22.8 3.5 24 138-161 3-26 (34)
161 cd00407 Urease_beta Urease bet 32.0 1.1E+02 0.0024 28.8 5.5 70 403-498 12-83 (101)
162 smart00745 MIT Microtubule Int 32.0 70 0.0015 27.8 4.2 35 94-128 6-40 (77)
163 KOG0686 COP9 signalosome, subu 31.8 63 0.0014 37.5 4.7 24 103-126 157-180 (466)
164 TIGR00192 urease_beta urease, 31.6 88 0.0019 29.4 4.8 71 402-498 11-83 (101)
165 KOG3785 Uncharacterized conser 31.3 1.7E+02 0.0038 33.5 7.9 82 43-129 397-482 (557)
166 PF00699 Urease_beta: Urease b 31.1 1.1E+02 0.0024 28.8 5.3 69 403-497 11-81 (100)
167 cd02679 MIT_spastin MIT: domai 30.5 69 0.0015 28.8 3.9 34 94-127 6-39 (79)
168 PF12735 Trs65: TRAPP traffick 29.8 3.5E+02 0.0076 30.4 10.3 115 394-511 157-285 (306)
169 PF13432 TPR_16: Tetratricopep 29.7 2.9E+02 0.0064 22.4 7.5 59 46-127 4-62 (65)
170 PF00630 Filamin: Filamin/ABP2 29.7 3E+02 0.0066 24.6 8.2 71 241-344 17-87 (101)
171 PF05753 TRAP_beta: Translocon 29.2 3.2E+02 0.007 28.4 9.1 84 237-351 30-113 (181)
172 COG3063 PilF Tfp pilus assembl 28.6 1.6E+02 0.0034 32.0 6.7 58 97-161 71-128 (250)
173 KOG3620 Uncharacterized conser 28.2 1.3E+02 0.0027 39.5 6.8 103 235-340 690-801 (1626)
174 COG4783 Putative Zn-dependent 28.1 1.6E+02 0.0035 35.0 7.2 62 94-161 338-399 (484)
175 KOG1130 Predicted G-alpha GTPa 27.5 89 0.0019 36.4 4.9 66 91-158 12-77 (639)
176 PF04425 Bul1_N: Bul1 N termin 27.2 3.7E+02 0.0081 31.8 10.1 120 381-502 133-272 (438)
177 cd02681 MIT_calpain7_1 MIT: do 26.6 98 0.0021 27.6 4.1 33 96-128 6-38 (76)
178 PF07721 TPR_4: Tetratricopept 26.6 90 0.002 21.4 3.1 23 138-160 3-25 (26)
179 PF04442 CtaG_Cox11: Cytochrom 26.2 2.8E+02 0.006 28.1 7.7 46 383-431 41-88 (152)
180 cd02656 MIT MIT: domain contai 26.1 1E+02 0.0022 26.8 4.2 35 94-128 4-38 (75)
181 PF13473 Cupredoxin_1: Cupredo 26.1 1.9E+02 0.0041 26.6 6.2 25 823-849 67-91 (104)
182 PRK15308 putative fimbrial pro 25.9 8.8E+02 0.019 26.3 15.6 37 476-512 76-112 (234)
183 KOG2041 WD40 repeat protein [G 25.7 3.3E+02 0.0072 34.0 9.3 99 45-160 929-1045(1189)
184 KOG1126 DNA-binding cell divis 25.6 2.5E+02 0.0053 34.6 8.4 98 78-185 472-569 (638)
185 KOG3060 Uncharacterized conser 25.1 6.2E+02 0.014 28.1 10.5 114 37-161 84-216 (289)
186 KOG2003 TPR repeat-containing 24.9 1.9E+02 0.0042 34.0 7.0 74 77-157 540-613 (840)
187 PRK13203 ureB urease subunit b 24.4 1.8E+02 0.0039 27.5 5.5 70 403-498 12-83 (102)
188 PF12895 Apc3: Anaphase-promot 24.2 1.3E+02 0.0028 26.2 4.5 47 109-159 2-48 (84)
189 PF03704 BTAD: Bacterial trans 24.1 3.1E+02 0.0067 26.4 7.7 62 100-161 10-87 (146)
190 smart00028 TPR Tetratricopepti 24.1 66 0.0014 20.6 2.1 26 101-126 6-31 (34)
191 cd02678 MIT_VPS4 MIT: domain c 24.0 1.2E+02 0.0026 26.6 4.2 35 94-128 4-38 (75)
192 PF12487 DUF3703: Protein of u 23.9 3.7E+02 0.0081 25.9 7.7 60 100-161 13-72 (112)
193 PF13431 TPR_17: Tetratricopep 23.9 70 0.0015 23.6 2.3 33 118-156 1-33 (34)
194 PF13525 YfiO: Outer membrane 23.7 2E+02 0.0044 29.8 6.6 57 100-159 9-65 (203)
195 KOG4648 Uncharacterized conser 23.4 93 0.002 35.5 4.1 27 101-127 102-128 (536)
196 PF13428 TPR_14: Tetratricopep 23.3 1.1E+02 0.0024 23.5 3.5 24 138-161 3-26 (44)
197 PF13174 TPR_6: Tetratricopept 23.1 93 0.002 21.6 2.8 23 139-161 3-25 (33)
198 KOG0553 TPR repeat-containing 23.0 3.3E+02 0.0071 30.6 8.1 54 102-161 121-174 (304)
199 PF13371 TPR_9: Tetratricopept 22.7 2.5E+02 0.0053 23.3 5.9 58 47-127 3-60 (73)
200 PRK13204 ureB urease subunit b 22.6 2.1E+02 0.0046 28.9 5.9 74 399-498 31-106 (159)
201 KOG1585 Protein required for f 22.4 1.6E+02 0.0034 32.4 5.4 65 72-138 29-94 (308)
202 PF06159 DUF974: Protein of un 22.3 1E+03 0.022 25.8 22.2 148 239-435 8-162 (249)
203 PF13176 TPR_7: Tetratricopept 22.3 1.2E+02 0.0026 22.4 3.3 22 140-161 3-24 (36)
204 PRK10747 putative protoheme IX 22.3 6.9E+02 0.015 28.7 11.3 55 99-159 156-210 (398)
205 PF06280 DUF1034: Fn3-like dom 22.0 1.6E+02 0.0035 27.6 5.0 23 315-337 60-82 (112)
206 PLN03218 maturation of RBCL 1; 21.9 1E+03 0.022 31.6 13.6 52 104-160 692-743 (1060)
207 PRK10153 DNA-binding transcrip 21.8 7.8E+02 0.017 29.8 11.8 57 97-161 422-478 (517)
208 PF06280 DUF1034: Fn3-like dom 21.6 2E+02 0.0044 26.9 5.6 27 816-842 56-82 (112)
209 PRK10747 putative protoheme IX 21.5 7.2E+02 0.015 28.6 11.2 110 41-161 265-386 (398)
210 COG2956 Predicted N-acetylgluc 21.3 6.3E+02 0.014 29.0 9.9 113 37-161 175-307 (389)
211 PRK13198 ureB urease subunit b 21.2 2.3E+02 0.0051 28.6 5.9 74 399-498 36-111 (158)
212 PRK14574 hmsH outer membrane p 21.0 6.7E+02 0.015 32.2 11.5 56 100-161 106-161 (822)
213 KOG3865 Arrestin [Signal trans 20.7 4.1E+02 0.0089 30.1 8.2 40 404-443 204-244 (402)
214 PRK13205 ureB urease subunit b 20.7 2.3E+02 0.0049 28.6 5.7 70 403-498 12-83 (162)
215 PF00927 Transglut_C: Transglu 20.7 1.8E+02 0.004 26.8 5.1 76 402-506 7-82 (107)
216 cd02684 MIT_2 MIT: domain cont 20.5 1.3E+02 0.0028 26.6 3.7 33 96-128 6-38 (75)
217 KOG4162 Predicted calmodulin-b 20.3 1.6E+02 0.0034 36.9 5.4 56 100-161 654-709 (799)
218 TIGR00540 hemY_coli hemY prote 20.3 8.7E+02 0.019 28.0 11.6 30 97-126 119-148 (409)
No 1
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.1e-73 Score=661.60 Aligned_cols=695 Identities=25% Similarity=0.300 Sum_probs=509.0
Q ss_pred CceechhcccCCHhHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-hhhHHHHHH
Q 002714 1 MMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQ 79 (889)
Q Consensus 1 M~al~~lm~~~~~~~~~~~le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~-l~sAlllEq 79 (889)
|+++++||+++..+-.-+|||+|+-+|.+.|+. .+.|.||+++++|+++.+|.|.+||+.++|++++++ +++||++||
T Consensus 221 m~sls~Fvq~~a~q~~sqyme~a~~~~~~i~k~-~~~A~rc~l~~aei~k~~~lh~eaa~~~~r~~see~dl~~allleq 299 (960)
T KOG1938|consen 221 MRSLSAFVQPDATQFPSQYMENAFPLYRLILKN-YQDANRCVLNSAEILKFLGLHKEAAEALARETSEEGDLLSALLLEQ 299 (960)
T ss_pred hhhhhhhcCCcchhhHHHHHhhhhHHHHHHHhh-ccchhhhccCchHHHHHHHHHHHHHHHHHHhhCcCchhhhHHHHHH
Confidence 889999999996653345999999999999987 689999999999999999999999999999999886 999999999
Q ss_pred HHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHH---H
Q 002714 80 ASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIA---V 156 (889)
Q Consensus 80 aA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~A---v 156 (889)
||+||...+|+|.|||+||+||||+||.++|++.||+|||++|+++|+.++|..++||++|++++ .+.+-+.|+| .
T Consensus 300 aal~f~~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~-~y~l~~~D~a~~~f 378 (960)
T KOG1938|consen 300 AALCFGSTKPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILH-VYLLCQEDDADEEF 378 (960)
T ss_pred HHHHhhcCCCCccchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHH-hhhhhcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 5544444444 4
Q ss_pred HHHHH----------------------hcCCCCccCCCc-cceEeccccEEEecC--Ccccccccccch----hhhhhHH
Q 002714 157 AHMLE----------------------KTGKTFEVVKPR-LPIINISSLKVIFED--HRTYASAEAANV----RESLWRS 207 (889)
Q Consensus 157 ~h~l~----------------------~~~~~~~~~~Lp-LP~I~~~~~rV~~~~--~~~~~~~~~~~~----~e~~W~~ 207 (889)
+|++. ......++++|+ +|.++++.++|++++ ++++++...+.. .+.+|..
T Consensus 379 ~~~i~~~~kqS~~~q~~FLRl~~~~~s~~~~~t~v~~l~~lp~l~~e~~~vi~~~~~~~t~~e~~~at~~~~~sd~~w~~ 458 (960)
T KOG1938|consen 379 SKLIADCMKQSKGLQTEFLRLYSNKDSFIYDHTPVVQLPQLPMLSMEERLVILSEPTRSTDAEALPATHQYLVSDNIWPS 458 (960)
T ss_pred HHHHhhhhhcChHHHHHHHHHHHHHhhcccccCCccccCCcchhhhhHHHHHhcCCCCCcchhhhhhhhhhccccccchh
Confidence 44433 112344778899 999999999999999 455555433333 5669999
Q ss_pred HHhhhccccccccchhhhhhhhhhh-ccccCCceeecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCC
Q 002714 208 LEEDMIPSLSTARSNWLELQSKLIM-KKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSS 286 (889)
Q Consensus 208 LEe~lv~~~~~~~~~w~~~~~~~~~-~~~~~~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~ 286 (889)
||++.+...+.|..+|+..+.+... .+..+.+++|+||++++.|+++|||++++.++++.|+|++... +....++..+
T Consensus 459 lEr~~s~~~~~~~~p~~~~ql~~~~~~~~~~~~v~v~Ge~~~l~v~~rnpl~~~~alT~~~ll~kl~~~-~~s~~~Na~s 537 (960)
T KOG1938|consen 459 LERKSSHILFAGSQPFRPSQLLLAEFSDKFKNPVPVAGEPIKLSVTLRNPLKISIALTNSSLLWKLHLD-NLSGSSNAYS 537 (960)
T ss_pred HHHHHHHHHhcccCCCcchhcccchhccccccccccCCcceeeEEeecCccceeccccchhhhhhcccc-cccccccccc
Confidence 9999988888887777755544322 2223489999999999999999999999999999999999973 2222222222
Q ss_pred cccccccccccccccccccCCCCCceeeeeeeEEEcCCceEEEEEEEEeCceeEEEEEEEEEEe------ccceeeEEEe
Q 002714 287 TTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRL------SGSLVGVYNF 360 (889)
Q Consensus 287 ~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~~~i~L~p~Etk~v~L~v~P~~~G~L~I~Gv~~~L------~~~v~g~~~F 360 (889)
... ..|+-+ . .-....+.+.+.|.+++.|+.+|+..|.|+|.|.+|+. .+.+.|...|
T Consensus 538 ~~~-------~~Pe~~---~------~s~~~~~~~~~~e~~t~~L~dfp~~~g~lkii~~v~~~~~~~vd~as~yg~~~l 601 (960)
T KOG1938|consen 538 HSQ-------SSPELI---D------DSAFPELLKSGEEDFTFMLRDFPRAIGILKIIRNVVNPLIEDVDAASVYGACSL 601 (960)
T ss_pred ccc-------cChhhh---h------hhhHHHHHhcchhceeeeeeeccccceEEeeeeccccchhcccchhhhhcccch
Confidence 110 112100 0 00123688999999999999999999999999999999 5678899999
Q ss_pred ecchhhhhcccccc-cccCCCCCceEEEEecCCceEEEEEecCCccccCccEEEEEEEEEecCccccceEEEEecCCceE
Q 002714 361 ESNLVKKKIAKGRR-KVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFL 439 (889)
Q Consensus 361 ~i~g~rl~~tK~kr-~~~~~pd~rL~~~V~~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~ 439 (889)
+++|+|++++|+++ ..++++|.||.+.+.+.+|.|+++|+++|..+||||+|++.|+++|.|.+|+.+|++++++|+|
T Consensus 602 e~qgirl~~~~~~~~s~~~t~d~RL~~~~~e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a~s~~~~- 680 (960)
T KOG1938|consen 602 EIQGIRLNNTKLDVTSSKLTNDTRLNILASEMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLAASWPYF- 680 (960)
T ss_pred hhhhcchhhhcccccccccChHHHHHHHHHhhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHHhcChhh-
Confidence 99999999999766 7899999999999999999999999999999999999999999999999999999999999977
Q ss_pred EeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEecCCC
Q 002714 440 SIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDV 519 (889)
Q Consensus 440 ~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~~~~L~pGes~~~Plwlra~~~G~~~l~~LfyYe~~~~ 519 (889)
. ..++ ..+.+.... ..++.. ...-+....+..++++.|.+|+++++|+|+|++.++. =++
T Consensus 681 ~--~l~n---~s~~~~~~~-~a~i~~---~~t~r~~~~s~~~~d~~l~g~r~rr~alW~r~~a~~~-----~~w------ 740 (960)
T KOG1938|consen 681 A--VLEN---ESHRKGKMN-AANISQ---QETTRFESGSGSDEDIVLDGGRRRRAALWFRLSAEAS-----KPW------ 740 (960)
T ss_pred h--hccc---ccccccccC-Hhhhhh---hhhhhhccccCCCcccccCCCceeeeeeeEecccccc-----cch------
Confidence 1 1111 112222211 011110 0111112233355789999999999999999996550 111
Q ss_pred CCCceEEEEEEEEEEEEeceeeEEEEEEeeccCCceEEEEEEEEeCCCCCceEEEEEEeeecceEEEecCCCcccCCccc
Q 002714 520 SSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSES 599 (889)
Q Consensus 520 ~~~~~~R~lR~~~~i~V~pSL~vs~~~~~s~s~~~~~ll~veV~N~~~~~~~~l~Qvs~vS~~W~l~~l~~~~~i~~~~~ 599 (889)
+| +++++. .+...|.....-..+++++.+.-.|.....+.-.+..++..
T Consensus 741 -----~r-------------------~~~~r~-------~~~~~n~a~~~y~~i~~~~~s~~~l~~~~~~~e~~dvpsa~ 789 (960)
T KOG1938|consen 741 -----LR-------------------QRQWRR-------ASWCLNTAKSTYSKIHWLSLSECILSKSLNLSENTDVPSAF 789 (960)
T ss_pred -----HH-------------------hhhhhh-------hhhhhhccccceeeeeeeehhhhhhhhhccchhhccCcccc
Confidence 12 111111 33333444445577888888888888877776666667777
Q ss_pred cCccceEEEEEEEeecCCCCCCCCCCCCCCccccCceeecCCCccccccCCCcchhhhhhhhhh----cccccCCCCccc
Q 002714 600 LFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLL----QRVSQDDTNTVD 675 (889)
Q Consensus 600 l~p~q~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~s~~P~~~f~~~~~~~----~~~~~~~~~~~~ 675 (889)
...++.++.+++.+.+...++.+++. .+.- ++..+..++.+||..-.-. +.-....++ +
T Consensus 790 ~~~~~~ls~~~~~~~~~~~~~e~e~~------i~~~---------~~~~s~~~~~~~~~~~st~~~~~~~~~~~~~~--~ 852 (960)
T KOG1938|consen 790 TPSGKNLSRTSVSFIGRAVEIESEQP------IVAR---------LVPLSQGETIKFFWLTSTTEVTPPAEIQSTMD--T 852 (960)
T ss_pred CccccccceeeeccccccccccccCC------cccc---------eeeccCCcchhhhhhccccccCCChhhccChh--h
Confidence 88899999998888877665433331 1121 2333444444444331100 000122222 2
Q ss_pred EEEEecccccCCCCCCCCCccccceeeecccccCCCcEEEEEecCceeeccCCCCceeEeEEEEEEeCCCccEEEEEEec
Q 002714 676 FIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTF 755 (889)
Q Consensus 676 ii~~w~a~~~~~~~~~~~~~~~g~~h~~~~~~~~~~~i~~~l~~p~~i~h~F~~~~c~vpv~l~l~N~s~~~v~v~i~~~ 755 (889)
|++.|+|++++|+- .+ ..+| ++-++.|.|....|.+..++.+.|.+...-+ +.
T Consensus 853 i~~~w~a~vv~~eg--~~-~~~g--------------------~~~~l~~~f~~~~~~~~~~~s~~~~~~~i~~----t~ 905 (960)
T KOG1938|consen 853 IVILWKANVVNDEG--VT-RFIG--------------------PFVKLKKLFKTDSCLSSLRISCETTSKEISH----TA 905 (960)
T ss_pred HHHhcccccccccc--ee-eecC--------------------CcceehhhccCCcccccchhhhhhhhhhcch----hh
Confidence 89999999998862 11 2223 5566777777777777777777777663221 22
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccCccCceEEeccccceEEeCCCceeEEE
Q 002714 756 DSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIA 835 (889)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~W~g~~~~~~~l~p~~~~~~~ 835 (889)
+.-.. -+.+-...+++-||.+|+.... .. .|.|+++||+|++++|.++++
T Consensus 906 ~~~~~--------~p~t~~~~n~~~~~~~v~~~~~--------------------~~--~w~~~~~~k~q~~~~~~~~~~ 955 (960)
T KOG1938|consen 906 DHLCE--------LPITLLISNNDLAWRPVSVSIE--------------------ES--SWIGRPVYKQQIGILEEASLE 955 (960)
T ss_pred hhhhc--------ccchhhhcCCcccccccchhhh--------------------hh--cccCCcceeeeecccccceee
Confidence 21111 1122334466677776654433 11 199999999999999999999
Q ss_pred eEEEE
Q 002714 836 MKVCL 840 (889)
Q Consensus 836 L~~~~ 840 (889)
|+|||
T Consensus 956 m~~~~ 960 (960)
T KOG1938|consen 956 MKWKI 960 (960)
T ss_pred eEecC
Confidence 99986
No 2
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=99.96 E-value=2.6e-25 Score=282.84 Aligned_cols=530 Identities=17% Similarity=0.135 Sum_probs=320.4
Q ss_pred hHHHHHHHHHHHHHHHhCC-----Cch----hhhHHHHHHHHHHHH-------------hcC---CHHHHHHHHHHHhCc
Q 002714 14 KEAEYCMENAFTTYAKIGS-----SGQ----QNATRCGLWWVEMLK-------------ARH---QYKDAATVYFRICGE 68 (889)
Q Consensus 14 ~~~~~~le~A~~~Y~~~~~-----~~~----~~AlR~~ll~~e~l~-------------~~~---~~~~Aa~~l~r~~~~ 68 (889)
..+-..++.|++.|.+... .++ -..+|++=+.+.+.. ... .-.+++.++.|+..-
T Consensus 355 ~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~ 434 (1185)
T PF08626_consen 355 NLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPL 434 (1185)
T ss_pred hhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhh
Confidence 4566788999999988751 112 234555555555540 000 456788888887742
Q ss_pred c----c-hhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHh-CCCcHHHHH-HHHHHHhhhcC-------------
Q 002714 69 E----P-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKK-CDQINHAIR-TYRSAVSVYKG------------- 128 (889)
Q Consensus 69 ~----~-l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k-~g~~~~A~r-cy~~A~~vY~~------------- 128 (889)
. + .-...++.-.|..| ..=++.||.||-+=++...+.. ..+....+| .+......|+-
T Consensus 435 ~l~~l~~~dqi~i~~~lA~vy--~~lG~~RK~AFvlR~l~~~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~ 512 (1185)
T PF08626_consen 435 QLKDLSVEDQIRIYSGLASVY--GSLGFHRKKAFVLRELAVQLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSK 512 (1185)
T ss_pred hhhhCCHHHHHHHHHHHHHHH--HhcchhHHHHHHHHHHHHHhccccCCcchHHHHHHHHHhccCcccCCcccccccccc
Confidence 1 2 23345555556645 3557999999999888888754 222233333 44556666663
Q ss_pred --CC-ccccchhhhhhHHHHHHHhCCHHHHHHHHH---H-------------------hcCC--CCccCCCccceEeccc
Q 002714 129 --ST-WSHIKDHVHFHIGQWYAVLGMHDIAVAHML---E-------------------KTGK--TFEVVKPRLPIINISS 181 (889)
Q Consensus 129 --~~-W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l---~-------------------~~~~--~~~~~~LpLP~I~~~~ 181 (889)
.+ |..+.=++...+-..+..++|+..+++|.. + +... ......+.+|..|.--
T Consensus 513 ~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL~~~~~~Ls~~EQ~~L~~~l~~~~~~~~~~~~~l~~~Ywdpfl 592 (1185)
T PF08626_consen 513 GSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLLRTYSPLLSPDEQIRLANNLQRTSAAANLGNSDLSAEYWDPFL 592 (1185)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhhhccCCcccccccCCCce
Confidence 12 888888888888888999999999987643 2 0110 1122234444332221
Q ss_pred cEEE-ecCCcccccccccchhhhhhH--HHHhhhccccccccchhhhhhhhhh--hccccCCceeecCCeEEEEEEEeCc
Q 002714 182 LKVI-FEDHRTYASAEAANVRESLWR--SLEEDMIPSLSTARSNWLELQSKLI--MKKFEESNICVAGEPVKVDIEFKNP 256 (889)
Q Consensus 182 ~rV~-~~~~~~~~~~~~~~~~e~~W~--~LEe~lv~~~~~~~~~w~~~~~~~~--~~~~~~~~~~vvgE~i~V~V~L~NP 256 (889)
+|-+ +...-.... .... ..+........ ...+| ..+...- ........++|+||+++|.|+|+||
T Consensus 593 vr~v~l~~~iP~~~--------~i~~~~~~~~~~~~~~~-~~~pF-YnPf~k~~~~~~~~~~~~~V~gE~~~v~VtLqNP 662 (1185)
T PF08626_consen 593 VRDVKLESSIPLKP--------DILPPHPRKSEASSQSI-NKGPF-YNPFSKKSSSSSNKKEPLWVVGEPAEVKVTLQNP 662 (1185)
T ss_pred eeeeecccCCCCcc--------chhhhhhhhhhhcccCC-CCCCc-CChhhcCCcccccccCccEEcCCeEEEEEEEECC
Confidence 1111 211100000 0000 01111111100 01223 3332210 0112236899999999999999999
Q ss_pred ccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEE-cCCceEEEEEEEEe
Q 002714 257 LQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISL-GGAETILVQLMVTP 335 (889)
Q Consensus 257 L~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~~~i~L-~p~Etk~v~L~v~P 335 (889)
++++|+|++|+|.+++... +....++.| +|.+++.|+|.++|
T Consensus 663 f~fel~I~~I~L~~egv~f-------------------------------------es~~~s~~l~~p~s~~~v~L~g~P 705 (1185)
T PF08626_consen 663 FKFELEISSISLSTEGVPF-------------------------------------ESYPVSIVLLPPNSTQTVRLSGTP 705 (1185)
T ss_pred ccceEEEEEEEEEEcCCcc-------------------------------------ccceeeeEecCCCcceEEEEEEEE
Confidence 9999999999999988742 112245665 99999999999999
Q ss_pred CceeEEEEEEEEEEeccceeeEEEeecchh-------hhhc--ccccccccC--------CCCCceEEEEecCCceEEEE
Q 002714 336 KVEGILKIVGVRWRLSGSLVGVYNFESNLV-------KKKI--AKGRRKVKS--------SPSNDLKFIVIKSLPKLEGL 398 (889)
Q Consensus 336 ~~~G~L~I~Gv~~~L~~~v~g~~~F~i~g~-------rl~~--tK~kr~~~~--------~pd~rL~~~V~~~~P~L~v~ 398 (889)
+++|.|+|+||.+++.|+...+. +....+ ..+. .++++..+. .....++++|+|++|.|++.
T Consensus 706 ~~~G~L~I~G~~i~v~g~~~~~~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~i~VIp~qP~L~v~ 784 (1185)
T PF08626_consen 706 LETGTLKITGCIIKVFGCREEFF-PIFKSEWGSIKGKKLKDKFRKGSRLDKPSPPLESESPKTKSLSIKVIPPQPLLEVK 784 (1185)
T ss_pred CccceEEEEEEEEEEccccccee-cccCcccchhhhhhcccccccccccccccccccccccccCcceEEEECCCCeEEEE
Confidence 99999999999999998654332 222211 1111 011111111 12457999999999999999
Q ss_pred Ee---cCCccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCc
Q 002714 399 IH---PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQ 475 (889)
Q Consensus 399 ~~---~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~ 475 (889)
+. +.+.|||+||.++++|+|+|.|++|++.|.+...+...-.+ ........++..-.|..+.... ..+
T Consensus 785 ~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~-~~~l~~k~l~~~e~yelE~~l~-------~~~- 855 (1185)
T PF08626_consen 785 SSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSFQDSTIEPL-QKALSNKDLSPDELYELEWQLF-------KLP- 855 (1185)
T ss_pred eccCCCcceEEECCcEEEEEEEEEECCccccceEEEEEEeccHHHH-hhhhhcccCChhhhhhhhhhhh-------cCc-
Confidence 98 44579999999999999999999999999999775311000 0000011111111111111000 011
Q ss_pred eeeecCCCcccCCCCeEEEEEEEEecC--CceeEEEEEEEEecCC-CCCCceEEEEEEEEEEEEeceeeEEEE-EEeec-
Q 002714 476 AVFSFPEGISIQGETPLLWPLWYRAAV--PGKISLSITIYYEMGD-VSSVIKYRLLRMHYNLEVLPSLNVSFQ-ISPWS- 550 (889)
Q Consensus 476 ~v~~~p~~~~L~pGes~~~Plwlra~~--~G~~~l~~LfyYe~~~-~~~~~~~R~lR~~~~i~V~pSL~vs~~-~~~s~- 550 (889)
.+.+.....|+||++.++++.+.|.. -.-+...+.+.|.... .....-.|-+++-..|+|.||+.|.-. +-|-.
T Consensus 856 -~~~i~~~~~I~Pg~~~~~~~~~~~~~~~~~~~~~~i~l~y~~~~~~~~~~y~Rql~ipl~vtV~~slev~~~dilp~~~ 934 (1185)
T PF08626_consen 856 -AFRILNKPPIPPGESATFTVEVDGKPGPIQLTYADIQLEYGYSGEDSSTFYTRQLSIPLTVTVNPSLEVTRCDILPLNS 934 (1185)
T ss_pred -ceeecccCccCCCCEEEEEEEecCcccccceeeeeEEEEecccCCCCCCCeeEEEEEEEEEEEeceEEEeeeeEEeccc
Confidence 12232223899999999999998872 2366778888887542 234455699999999999999999763 33331
Q ss_pred -----------------------cCCceEEEEEEEEeCCCCCceEEEEEEeeecceEEEecCCCcccCCccccCccceEE
Q 002714 551 -----------------------SRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALS 607 (889)
Q Consensus 551 -----------------------s~~~~~ll~veV~N~~~~~~~~l~Qvs~vS~~W~l~~l~~~~~i~~~~~l~p~q~~~ 607 (889)
......+|-+||.|....+ +.+ +|.. . -+.......+.||++.+
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~clL~lDlrNsw~~~-~~v-~l~~---------~--~~~~~~~~~I~pg~t~R 1001 (1185)
T PF08626_consen 935 DSVSSNSDSWISYITSLKSDVNDDSSDYCLLLLDLRNSWPNP-LSV-NLHY---------D--EDFSSSEITIEPGHTSR 1001 (1185)
T ss_pred ccccccCcchhhhhhhhcccccCCCCCeEEEEEEEEecCCCc-eEE-EEEe---------c--cCccccceEECCCCeEE
Confidence 2234578999999987764 321 1111 0 11111224789999999
Q ss_pred EEEEEeecC
Q 002714 608 CFFMLKNRG 616 (889)
Q Consensus 608 ~~f~~~~~~ 616 (889)
+.+-++++.
T Consensus 1002 i~vPi~Ri~ 1010 (1185)
T PF08626_consen 1002 IIVPIKRIY 1010 (1185)
T ss_pred EEEEecccc
Confidence 999999975
No 3
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=99.96 E-value=1.4e-29 Score=289.70 Aligned_cols=139 Identities=48% Similarity=0.766 Sum_probs=128.8
Q ss_pred CceechhcccCCH------hHHHHHHHHHHHHHHH----hCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--
Q 002714 1 MMGLTYFMLDQSR------KEAEYCMENAFTTYAK----IGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGE-- 68 (889)
Q Consensus 1 M~al~~lm~~~~~------~~~~~~le~A~~~Y~~----~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~-- 68 (889)
|+|||+||++++. ++++.|||+|+++|.+ +|.. +++|+||+++++|+++++|.|.+|+.+++|+.++
T Consensus 253 m~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~~~-~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l 331 (414)
T PF12739_consen 253 MAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPRCSL-PYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL 331 (414)
T ss_pred HHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhcccccc-ccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 8999999999853 4799999999999999 6765 4799999999999999999999999999999987
Q ss_pred cc-hh---hHHHHHHHHhhh--hccCC--Cc---chhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchh
Q 002714 69 EP-LH---SAVMLEQASYCY--LLSKP--PM---LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDH 137 (889)
Q Consensus 69 ~~-l~---sAlllEqaA~c~--l~~~~--~~---~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dh 137 (889)
+. ++ +|||+||||+|| +.... ++ +||||||||||||+|.++||++||+|||.+|+++|++++|.+++||
T Consensus 332 ~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~~W~~~~dh 411 (414)
T PF12739_consen 332 ESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGKGWSLIEDH 411 (414)
T ss_pred hhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCcccc
Confidence 64 77 999999999999 77633 56 9999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 002714 138 VHF 140 (889)
Q Consensus 138 i~~ 140 (889)
|+|
T Consensus 412 l~f 414 (414)
T PF12739_consen 412 LHF 414 (414)
T ss_pred cCC
Confidence 997
No 4
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.1e-17 Score=191.88 Aligned_cols=285 Identities=18% Similarity=0.136 Sum_probs=186.6
Q ss_pred CceeecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeee
Q 002714 238 SNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV 317 (889)
Q Consensus 238 ~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~~ 317 (889)
.-++|||||++|.|+++||+.+++.+.||+|..+... |.....
T Consensus 686 ~LvwVvdepvef~v~v~Np~~fdl~V~Di~L~~egvn-------------------------------------F~~~~v 728 (1235)
T KOG1953|consen 686 KLVWVVDEPVEFSVYVRNPLSFDLEVQDIHLETEGVN-------------------------------------FKCSHV 728 (1235)
T ss_pred eEEEEeCCceEEEEEEcCccceeEEEeeEEEEecccc-------------------------------------ceeeee
Confidence 5689999999999999999999999999999976662 112235
Q ss_pred eEEEcCCce-EEEEEEEEeCceeEEEEEEEEEEeccceeeEEEeecchhh-hhcc--cccc--cccCCCCCceEEEEecC
Q 002714 318 DISLGGAET-ILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVK-KKIA--KGRR--KVKSSPSNDLKFIVIKS 391 (889)
Q Consensus 318 ~i~L~p~Et-k~v~L~v~P~~~G~L~I~Gv~~~L~~~v~g~~~F~i~g~r-l~~t--K~kr--~~~~~pd~rL~~~V~~~ 391 (889)
+++++|... ++|+|.++|++.|.|.|+|++.+++|+..-.|.|...|-. .+.- +++. ...|. ++.+.|.|.
T Consensus 729 s~~~Ppns~~e~Irl~g~P~e~gpl~i~gy~v~cfg~~~~lq~f~~~gd~~~s~~v~~e~~kl~~vyl---~~~i~ilP~ 805 (1235)
T KOG1953|consen 729 SFTMPPNSIAERIRLTGTPTETGPLHIVGYRVKCFGCEPILQYFYEAGDKHKSLHVYLEKSKLVNVYL---RSLITILPL 805 (1235)
T ss_pred eeecCcccccceEEEeccccccCceeeeeEEEEEeeechHHHHHHhcccccCCccceeccchhheeec---ccccccCCC
Confidence 899999977 9999999999999999999999999877666777776542 1111 1111 12333 345788999
Q ss_pred CceEEEEEe----cCCccccCccEEEEEEEEEecCccccceEEEEecC------CceEEeccCCCCCCcchhhhhccccc
Q 002714 392 LPKLEGLIH----PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSH------PRFLSIGNRDDMTKEFPACLQKMTNA 461 (889)
Q Consensus 392 ~P~L~v~~~----~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~------p~~~~~g~~~~~~~~~p~~l~~~~~~ 461 (889)
+|.+...-+ .+.-++|+||.+.+.|+++|.|.+|+....+.+.. +..+++-..++..-.++.|..+.+-+
T Consensus 806 ~P~~~l~~d~k~~s~~~ivy~Gq~~d~~Itv~N~s~~pin~~~v~~~~~i~q~~~p~~~~~~~e~~s~~~e~~~l~~~l~ 885 (1235)
T KOG1953|consen 806 WPYFPLKKDLKTKSFDCIVYAGQPTDLSITVQNLSSGPINFAEVETGELIYQMLIPNTSFVEAEHISVLFEDSSLKAFLQ 885 (1235)
T ss_pred cccchhhhcccCCCccEEEEcCCcceEEEEEEecCccceEEEEEeeccchhhcCCCceeecCchhhHhhccCccchhHHH
Confidence 996655433 34458999999999999999999999999999998 44555554443211111111111100
Q ss_pred ------cccc------cCCCCCCCCceeeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEecCCCCCC-ceE-EE
Q 002714 462 ------EQSV------AGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSV-IKY-RL 527 (889)
Q Consensus 462 ------e~~~------~~~~~~~~~~~v~~~p~~~~L~pGes~~~Plwlra~~~G~~~l~~LfyYe~~~~~~~-~~~-R~ 527 (889)
.++. ..++...+...+++++ ..+.+++..+.-+-+|++-. ..-|+..|.++-+.+. .-| |-
T Consensus 886 ai~~~P~is~n~~~el~~~et~vP~fT~~sll--ip~s~s~~de~~Ipl~~~l~---~~efilrrs~eip~~D~e~fer~ 960 (1235)
T KOG1953|consen 886 AIADKPVISANRLYELQFEETNVPTFTVESLL--IPLSPSERDEIHIPLRAPLS---QEEFILRRSVEIPEDDIEFFERR 960 (1235)
T ss_pred HHHhCCCCCcchhhhhhhhccCCCCccccccc--CCCCCCCCceEEEEeecccC---cceeEEEeeecCcccchHHHHHh
Confidence 0000 0001111112233333 47899999999999999732 2334555555544332 112 66
Q ss_pred EEEEEEEEEeceeeEEEEEEeeccC-CceEEEEEEEEeCCCC
Q 002714 528 LRMHYNLEVLPSLNVSFQISPWSSR-LQQYLVRMDVVNQTSS 568 (889)
Q Consensus 528 lR~~~~i~V~pSL~vs~~~~~s~s~-~~~~ll~veV~N~~~~ 568 (889)
+|.-.-|+..|+..+++.-. -+++ .-..+|.|++.|....
T Consensus 961 ~~~p~~i~i~p~v~~~aws~-lp~ddpf~~lv~v~~~ns~~~ 1001 (1235)
T KOG1953|consen 961 LRIPVSINISPRVDLKAWSA-LPEDDPFYCLVLVNFYNSFSE 1001 (1235)
T ss_pred hcCcceEEecccccchhccc-CCCCCceEEEEEEecccccCC
Confidence 78888888899988888632 1111 2345556666665443
No 5
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=99.20 E-value=1.2e-06 Score=104.65 Aligned_cols=505 Identities=15% Similarity=0.155 Sum_probs=259.8
Q ss_pred eeecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002714 240 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 319 (889)
Q Consensus 240 ~~vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~~~i 319 (889)
...+||++.+.|.|++....||.+++|++.......+-....+... .....++ .+...-.....++
T Consensus 22 ~~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~--------~~~~~~~------~~~~~~~~~~~~L 87 (554)
T PF07919_consen 22 EGKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDAD--------ASSADSS------TSSGSPLSGSADL 87 (554)
T ss_pred CccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccc--------cccccCc------ccccccccCccce
Confidence 4669999999999999999999999999987665432221111100 0000000 0000001123589
Q ss_pred EEcCCceEEEEEEEEeCc---eeEEEEEEEEEEeccc-e--eeEEEeec--ch--hhhhcc-c-ccccccCCCCCceEEE
Q 002714 320 SLGGAETILVQLMVTPKV---EGILKIVGVRWRLSGS-L--VGVYNFES--NL--VKKKIA-K-GRRKVKSSPSNDLKFI 387 (889)
Q Consensus 320 ~L~p~Etk~v~L~v~P~~---~G~L~I~Gv~~~L~~~-v--~g~~~F~i--~g--~rl~~t-K-~kr~~~~~pd~rL~~~ 387 (889)
.|.|++++...+.+.|++ .|.++|.+|...+... . ...-.|.. .+ ...... + .++...+.+...-.+.
T Consensus 88 ~l~p~~~kv~~~~~~~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~ 167 (554)
T PF07919_consen 88 TLSPGQTKVFSFKFVPREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSIR 167 (554)
T ss_pred EEeecceEEEEEEEeccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEEE
Confidence 999999999999999999 9999999999999721 1 11111110 00 000000 0 0111111111344788
Q ss_pred EecCCceEEEEEecCCccccCccEEEEEEEEEecCccccceEEEEecC-CceEEeccCCCCCCcchhhhhcccccccccc
Q 002714 388 VIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSH-PRFLSIGNRDDMTKEFPACLQKMTNAEQSVA 466 (889)
Q Consensus 388 V~~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~-p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~ 466 (889)
|.|.=|.+++.+.......|.||...+.|+|.|......+........ +.........+.+ .. ..+.
T Consensus 168 I~p~pp~v~I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~--- 235 (554)
T PF07919_consen 168 ILPRPPKVSIKLPNHKPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETED--LS-------QVNW--- 235 (554)
T ss_pred EECCCCCeEEEeCCCCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCcc--ce-------eccc---
Confidence 999999999999656678999999999999999998877644333222 3222211111100 00 0000
Q ss_pred CCCCCCCCceeeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEec--CCCCCCceEEEEEEEEEEEEeceeeEEE
Q 002714 467 GGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM--GDVSSVIKYRLLRMHYNLEVLPSLNVSF 544 (889)
Q Consensus 467 ~~~~~~~~~~v~~~p~~~~L~pGes~~~Plwlra~~~G~~~l~~LfyYe~--~~~~~~~~~R~lR~~~~i~V~pSL~vs~ 544 (889)
+..+.....+..-.-+.|++|++.+.++.++...+|...|.+=++|.. .+.....-+- .....+.+..-+.++.
T Consensus 236 --~~~~~~~~~~~~~~lg~l~~~~s~~~~l~i~~~~~~~~~L~i~~~Y~l~~~~~~~~~i~~--~~~~~l~~~~PF~~~y 311 (554)
T PF07919_consen 236 --DSDKDDEPLFLGIPLGELAPGSSITVTLYIRTSRPGEYELSISVSYHLDVESDPETPISK--TKTVQLPVINPFEANY 311 (554)
T ss_pred --ccccccchhccCcccccCCCCCcEEEEEEEEeCCceeEEEEEEEEEEEecCCCCceeEEE--eEEEeeeEEcCEEeee
Confidence 000000111111124678999999999999977999999999999975 3221111121 1225555556664444
Q ss_pred EE----Eeecc-CCceEEEEEEEEeCCCCCce---EEEEEEeeecceEEEecCCCcccCCccccCccceEEEEEEEeecC
Q 002714 545 QI----SPWSS-RLQQYLVRMDVVNQTSSENF---QIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 616 (889)
Q Consensus 545 ~~----~~s~s-~~~~~ll~veV~N~~~~~~~---~l~Qvs~vS~~W~l~~l~~~~~i~~~~~l~p~q~~~~~f~~~~~~ 616 (889)
.+ ++..- .+.-+.+...-......... +=..--.....|.+..-. .+..+. +=+....-+.+....
T Consensus 312 ~~~~~~~~~~~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i--~s~a~~----~L~I~~~~l~~~~~~ 385 (554)
T PF07919_consen 312 DFSPRFHPDPWDMPSPFDVDGSSDFQTLNPEPLTRDGILSVGLNQPWCLNSDI--ESFAPE----PLEIEDISLEVLSSN 385 (554)
T ss_pred eEEeeeccCCccCCcccccccccccccccccccccccccccccCCCeEEEccc--eecCCC----ceEEEEEEEEEecCC
Confidence 32 22222 01111111111100000000 000012233455553311 000000 112222333333222
Q ss_pred CCCCCCCCCCCCCccccCceeecCC--CccccccCCCcchhhhhhhhhhcccccCCCCcccEEEEecccccCCCCCCCCC
Q 002714 617 ESSTSSDDTSSPSRLLGSDVSLQGT--ADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDP 694 (889)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~d~~l~~~--~~~~~~~s~~P~~~f~~~~~~~~~~~~~~~~~~~ii~~w~a~~~~~~~~~~~~ 694 (889)
.....+.. ....+---.+..+..+ .+..++.. +.-++..-...........+.+.|+-...++....
T Consensus 386 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~f~~~-------~~~~~~~~~~~~~~~~~g~~~I~WrR~~~~s~~~~--- 454 (554)
T PF07919_consen 386 GGASCDVS-SEDSSSPESGTVLQPGECREDQFCLR-------LDVQKLSLDDRRNVTLLGSLVIKWRRNSSNSSDPV--- 454 (554)
T ss_pred Cceeeeec-cccccCCCccceeCcccccccccccc-------ccccccccccCccceeEEEEEEEEEECCCCCCCce---
Confidence 11100000 0000000001111100 00110000 00111111112334455788999998211111110
Q ss_pred ccccceeeecc-cccCCCcEEEEEecCceeeccCCCCceeEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCC
Q 002714 695 QHLFSHHACHC-SILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSA 773 (889)
Q Consensus 695 ~~~g~~h~~~~-~~~~~~~i~~~l~~p~~i~h~F~~~~c~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~ 773 (889)
.. .-+..+ ......|++..++.|.... ---.+.++.+|.|.+.+...+.+.+-.
T Consensus 455 -~~--t~l~lP~~~v~~~~~~v~~~~p~~~~-----~~~~~~l~~~I~N~T~~~~~~~~~me~----------------- 509 (554)
T PF07919_consen 455 -VT--TPLPLPRVNVPSSPLRVLASVPPSAI-----VGEPFTLSYTIENPTNHFQTFELSMEP----------------- 509 (554)
T ss_pred -EE--EEeecCceEccCCCcEEEEecCCccc-----cCcEEEEEEEEECCCCccEEEEEEEcc-----------------
Confidence 10 111111 1235678999998865333 234588999999999988877776521
Q ss_pred CCCCCCCCcccccccccceecccCCccccccCCccCccCceEEeccccceEEeCCCceeEEEeEEEEecceeeecCCcEE
Q 002714 774 VPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYAL 853 (889)
Q Consensus 774 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~W~g~~~~~~~l~p~~~~~~~L~~~~~~~GvYdl~~~~l 853 (889)
...|++.|..+..++|-|++...+..+..-+.+|..-|=+++|
T Consensus 510 -------------------------------------s~~F~fsG~k~~~~~llP~s~~~~~y~l~pl~~G~~~lP~l~v 552 (554)
T PF07919_consen 510 -------------------------------------SDDFMFSGPKQTTFSLLPFSRHTVRYNLLPLVAGWWILPRLKV 552 (554)
T ss_pred -------------------------------------CCCEEEECCCcCceEECCCCcEEEEEEEEEccCCcEECCcEEE
Confidence 1229999999999999999999999999999999997755544
No 6
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=97.90 E-value=0.0016 Score=70.40 Aligned_cols=183 Identities=19% Similarity=0.218 Sum_probs=125.6
Q ss_pred cccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCC-CCCcchhhhhccccccccccCCCCCCCCceeeecCCC
Q 002714 405 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDD-MTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEG 483 (889)
Q Consensus 405 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~-~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~~ 483 (889)
.+|.||.....|.+.|.+..+++++.|...-- ..+. ...++.. ... .. -| .
T Consensus 9 ~iylGEtF~~~l~~~N~s~~~v~~v~ikvemq------T~s~~~r~~L~~---------------~~~--~~----~~-~ 60 (249)
T PF06159_consen 9 SIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQ------TPSQSLRLPLSD---------------NEN--SD----SP-V 60 (249)
T ss_pred CEeecCCEEEEEEeecCCCCceEEeEEEEEEe------CCCCCccccCCC---------------Ccc--cc----cc-c
Confidence 58999999999999999999999999986531 1111 0000000 000 00 01 2
Q ss_pred cccCCCCeEEEEEEEEecCCceeEEEEEEEEecCCCCCCceEEEEEEEEEEEEeceeeEEEEEEeeccC-----CceEEE
Q 002714 484 ISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSR-----LQQYLV 558 (889)
Q Consensus 484 ~~L~pGes~~~Plwlra~~~G~~~l~~LfyYe~~~~~~~~~~R~lR~~~~i~V~pSL~vs~~~~~s~s~-----~~~~ll 558 (889)
..|.||++++.-+=..=.+.|.|.|...+.|......+ -+-|..|-...+.|.+.|.|+..+...... ...+.|
T Consensus 61 ~~L~p~~~l~~iv~~~lkE~G~h~L~c~VsY~~~~~~~-g~~~tfRK~ykF~v~~PL~VktK~~~~~~~~~~~~~~~~~L 139 (249)
T PF06159_consen 61 ASLAPGESLDFIVSHELKELGNHTLVCTVSYTDPTETS-GERRTFRKFYKFQVLNPLSVKTKVYNLEDDSSLSPRERVFL 139 (249)
T ss_pred cccCCCCeEeEEEEEEeeecCceEEEEEEEEecCcccC-CccceEeeeeEEeCCCCcEEEEEEEecCCccccccceeEEE
Confidence 45899999776665555689999998887444331111 234789999999999999999987655442 347999
Q ss_pred EEEEEeCCCCCceEEEEEEee-ecceEEEecCCCcccC------------CccccCccceEEEEEEEeecCC
Q 002714 559 RMDVVNQTSSENFQIHQLSSV-GHQWEISLLQPFDSIF------------PSESLFAGQALSCFFMLKNRGE 617 (889)
Q Consensus 559 ~veV~N~~~~~~~~l~Qvs~v-S~~W~l~~l~~~~~i~------------~~~~l~p~q~~~~~f~~~~~~~ 617 (889)
.+.|+|.+.. .+.|..|..- ++.|+...+....... ....|.|++.-...|++++...
T Consensus 140 EaqlqN~s~~-pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~qylF~l~~~~~ 210 (249)
T PF06159_consen 140 EAQLQNISSG-PLFLEKVKLEPSPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVRQYLFCLTPKPE 210 (249)
T ss_pred EEEEEecCCC-ceEEEEEEeecCCCceeEecccccccccccccccccccCCcceeCCCCEEEEEEEEEECCc
Confidence 9999999954 5888887775 5578887765221100 1235899999999999888765
No 7
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.0023 Score=70.28 Aligned_cols=144 Identities=18% Similarity=0.151 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhC----ccchhhHHHHHHHHhhhhccCC
Q 002714 14 KEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICG----EEPLHSAVMLEQASYCYLLSKP 89 (889)
Q Consensus 14 ~~~~~~le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~----~~~l~sAlllEqaA~c~l~~~~ 89 (889)
.++-.+++.|-+.|-..... ..|..|-+-.+++....+...+||..+..+.. .++-.+.-.+++|...|. ..
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~--~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~--~~ 107 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDW--EKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYR--EA 107 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH--hc
Confidence 45556888888899777654 79999999999999888877777777766552 133455668899999886 56
Q ss_pred CcchhhHHHHHHhhHhHHhC-CCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 90 PMLHKYGFHLVLSGDRYKKC-DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 90 ~~~RK~Af~~vLAg~ry~k~-g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
++++++|--+.-.|..|.+. |....|+.+|.+|..+|...+-..-.......++..+..+|++++|+..|-+
T Consensus 108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 78899999999999999999 9999999999999999999885555556778999999999999999988855
No 8
>COG1470 Predicted membrane protein [Function unknown]
Probab=97.06 E-value=0.055 Score=62.14 Aligned_cols=124 Identities=17% Similarity=0.187 Sum_probs=80.0
Q ss_pred eeEEEcCCceEEEEEEEEeCce---eEEEEEEEEEEeccceeeEEEeecchhhhhcccccccccCCCCCceEEEEecCCc
Q 002714 317 VDISLGGAETILVQLMVTPKVE---GILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLP 393 (889)
Q Consensus 317 ~~i~L~p~Etk~v~L~v~P~~~---G~L~I~Gv~~~L~~~v~g~~~F~i~g~rl~~tK~kr~~~~~pd~rL~~~V~~~~P 393 (889)
..+-|.|+|++.+.|.+.|... |.+.+. |--. +.. .+.-...|+++++..+-
T Consensus 325 t~vkL~~gE~kdvtleV~ps~na~pG~Ynv~-----------------I~A~------s~s--~v~~e~~lki~~~g~~~ 379 (513)
T COG1470 325 TSVKLKPGEEKDVTLEVYPSLNATPGTYNVT-----------------ITAS------SSS--GVTRELPLKIKNTGSYN 379 (513)
T ss_pred EEEEecCCCceEEEEEEecCCCCCCCceeEE-----------------EEEe------ccc--cceeeeeEEEEeccccc
Confidence 3689999999999999999853 544332 2110 000 00001123344443332
Q ss_pred eEEEEEecCC--ccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCC
Q 002714 394 KLEGLIHPLP--ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 471 (889)
Q Consensus 394 ~L~v~~~~lP--~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 471 (889)
.. +.+..-| ..+-.||-..+.+.+.|.|.+||+||.+.++.|.-..+.-+
T Consensus 380 ~~-v~l~~g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd--------------------------- 431 (513)
T COG1470 380 EL-VKLDNGPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVD--------------------------- 431 (513)
T ss_pred ee-EEccCCcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEEC---------------------------
Confidence 22 3333333 35789999999999999999999999999999843211100
Q ss_pred CCCceeeecCCCcccCCCCeEEEEEEEEec
Q 002714 472 KMPQAVFSFPEGISIQGETPLLWPLWYRAA 501 (889)
Q Consensus 472 ~~~~~v~~~p~~~~L~pGes~~~Plwlra~ 501 (889)
... + ..|+||++.++++.+|+|
T Consensus 432 ---~~~--I---~sL~pge~~tV~ltI~vP 453 (513)
T COG1470 432 ---EST--I---PSLEPGESKTVSLTITVP 453 (513)
T ss_pred ---ccc--c---cccCCCCcceEEEEEEcC
Confidence 011 1 248999999999999999
No 9
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.037 Score=58.63 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHhCcc----c-hhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcC
Q 002714 54 QYKDAATVYFRICGEE----P-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG 128 (889)
Q Consensus 54 ~~~~Aa~~l~r~~~~~----~-l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~ 128 (889)
.|+|||..+.|+.+.- + -.++-...+||-|+++ .....-+|--+|-|++.|.|. ++..|.+|+..|..+|-.
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k--~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~ 105 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLK--AGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTD 105 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHh
Confidence 4999999999988643 2 2455667788888774 446678999999999999998 999999999999999987
Q ss_pred CCccccchhhhhhHHHHHHHh-CCHHHHHHHHHH
Q 002714 129 STWSHIKDHVHFHIGQWYAVL-GMHDIAVAHMLE 161 (889)
Q Consensus 129 ~~W~~~~dhi~~~lgr~~~~l-~~~~~Av~h~l~ 161 (889)
.|--..--.-|+.||..+..- .+++.||.|+-.
T Consensus 106 ~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~ 139 (288)
T KOG1586|consen 106 MGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQ 139 (288)
T ss_pred hhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHH
Confidence 653222222356778877554 888889888743
No 10
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.18 Score=53.56 Aligned_cols=146 Identities=21% Similarity=0.194 Sum_probs=112.7
Q ss_pred cCCH-hHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhC----ccchhhHHHHHHHHhhh
Q 002714 10 DQSR-KEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICG----EEPLHSAVMLEQASYCY 84 (889)
Q Consensus 10 ~~~~-~~~~~~le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~----~~~l~sAlllEqaA~c~ 84 (889)
+.++ .++-.+++.|-+.|--+.+ +..|=-+-+-.+++....|.-.+||..++-+.. .++..++=.||.|-..|
T Consensus 26 g~~k~eeAadl~~~Aan~yklaK~--w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIy 103 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANMYKLAKN--WSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIY 103 (288)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 3344 4555588888888865543 356667778888887777765668887777763 35577888999999966
Q ss_pred hccCCCcchhhHHHHHHhhHhHHhC-CCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHH
Q 002714 85 LLSKPPMLHKYGFHLVLSGDRYKKC-DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 159 (889)
Q Consensus 85 l~~~~~~~RK~Af~~vLAg~ry~k~-g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~ 159 (889)
- ..+++|.+|-|-+-=|+-|+.. .....|+.||.+|-..|++..=...-.--+...+.++..++++..||+-+
T Consensus 104 t--~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iy 177 (288)
T KOG1586|consen 104 T--DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIY 177 (288)
T ss_pred H--hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5679999999999999999988 88999999999999999986433333345677888999999999998754
No 11
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=95.46 E-value=0.15 Score=47.65 Aligned_cols=90 Identities=19% Similarity=0.246 Sum_probs=52.4
Q ss_pred eeecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002714 240 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 319 (889)
Q Consensus 240 ~~vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~~~i 319 (889)
..++|+++.|.|.|+||+..+|.==++.|.+.-..-+|-. . . .+......+
T Consensus 10 ~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~----------------~--~-----------~~~~~~~~~ 60 (107)
T PF00927_consen 10 DPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLT----------------R--D-----------QFKKEKFEV 60 (107)
T ss_dssp EEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTE----------------E--E-----------EEEEEEEEE
T ss_pred CccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcc----------------c--c-----------cEeEEEcce
Confidence 3569999999999999999886543444332222111100 0 0 022344579
Q ss_pred EEcCCceEEEEEEEEeCceeEEEEEEEEEEec--cceeeEE
Q 002714 320 SLGGAETILVQLMVTPKVEGILKIVGVRWRLS--GSLVGVY 358 (889)
Q Consensus 320 ~L~p~Etk~v~L~v~P~~~G~L~I~Gv~~~L~--~~v~g~~ 358 (889)
.|+|++++.+.+.++|.+.|.-++..-.+++. +.+.|..
T Consensus 61 ~l~p~~~~~~~~~i~p~~yG~~~~l~~~~~~~~l~~V~g~~ 101 (107)
T PF00927_consen 61 TLKPGETKSVEVTITPSQYGPKQLLVDLFSSDALADVKGTK 101 (107)
T ss_dssp EE-TTEEEEEEEEE-HHSHEEECCEEEEEEESSEEEEEEEE
T ss_pred eeCCCCEEEEEEEEEceeEecchhcchhcchhhhcCeeccE
Confidence 99999999999999999999843332134433 3444443
No 12
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.36 E-value=0.069 Score=58.63 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=60.3
Q ss_pred hhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHh-C
Q 002714 72 HSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVL-G 150 (889)
Q Consensus 72 ~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l-~ 150 (889)
.++=..++||.|+...+ ....+|-.++-||.-|.+. ++..|+.||.+|..+|...|=..---..+..+|+.+... |
T Consensus 53 ~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~ 129 (282)
T PF14938_consen 53 KAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG 129 (282)
T ss_dssp HHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-
T ss_pred hhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC
Confidence 46667777777776533 3457777788888888777 788888888888888877653322335667788888777 8
Q ss_pred CHHHHHHHHHH
Q 002714 151 MHDIAVAHMLE 161 (889)
Q Consensus 151 ~~~~Av~h~l~ 161 (889)
+++.|+.++..
T Consensus 130 d~e~Ai~~Y~~ 140 (282)
T PF14938_consen 130 DYEKAIEYYQK 140 (282)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88888877654
No 13
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.60 E-value=0.11 Score=45.96 Aligned_cols=72 Identities=17% Similarity=0.320 Sum_probs=46.4
Q ss_pred CccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCCCcccC
Q 002714 408 AGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQ 487 (889)
Q Consensus 408 ~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~~~~L~ 487 (889)
.||...+.++++|.|..++.++.+..+.|+=...... +.. + ..|.
T Consensus 3 ~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~-----------------------------~~~---~---~~l~ 47 (78)
T PF10633_consen 3 PGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSAS-----------------------------PAS---V---PSLP 47 (78)
T ss_dssp TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---E-----------------------------EEE---E-----B-
T ss_pred CCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCC-----------------------------ccc---c---ccCC
Confidence 6999999999999999999999999988843221000 001 1 1689
Q ss_pred CCCeEEEEEEEEec---CCceeEEEEEEEE
Q 002714 488 GETPLLWPLWYRAA---VPGKISLSITIYY 514 (889)
Q Consensus 488 pGes~~~Plwlra~---~~G~~~l~~LfyY 514 (889)
||++.++.+-|+.| .+|...+.+...|
T Consensus 48 pG~s~~~~~~V~vp~~a~~G~y~v~~~a~y 77 (78)
T PF10633_consen 48 PGESVTVTFTVTVPADAAPGTYTVTVTARY 77 (78)
T ss_dssp TTSEEEEEEEEEE-TT--SEEEEEEEEEE-
T ss_pred CCCEEEEEEEEECCCCCCCceEEEEEEEEe
Confidence 99999999999988 4699888888777
No 14
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=94.38 E-value=0.37 Score=44.38 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=57.9
Q ss_pred ceEEEEEecCCc-cccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCC
Q 002714 393 PKLEGLIHPLPE-RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 471 (889)
Q Consensus 393 P~L~v~~~~lP~-~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 471 (889)
|.|++.-..+.- .+..|+.....|+|+|.|..|++. ++. .|+ ...
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f-~v~--~~~--------~~~----------------------- 47 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARF-RVR--QPE--------SLS----------------------- 47 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEE-EEE--eCC--------cCC-----------------------
Confidence 455544333332 578999999999999999998532 222 121 000
Q ss_pred CCCceeee-cCCCcccCCCCeEEEEEEEEec-CCceeEEEEEEEEec
Q 002714 472 KMPQAVFS-FPEGISIQGETPLLWPLWYRAA-VPGKISLSITIYYEM 516 (889)
Q Consensus 472 ~~~~~v~~-~p~~~~L~pGes~~~Plwlra~-~~G~~~l~~LfyYe~ 516 (889)
..|. .|..+.|.||++.++.+-+.++ ..|..+..+.+..|.
T Consensus 48 ----~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~ 90 (102)
T PF14874_consen 48 ----SFFSVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEG 90 (102)
T ss_pred ----CCEEEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECC
Confidence 0111 2346789999999999999965 789999888887664
No 15
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=93.45 E-value=0.58 Score=42.27 Aligned_cols=85 Identities=14% Similarity=0.260 Sum_probs=56.9
Q ss_pred ceEEEEEecCCccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCC
Q 002714 393 PKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNK 472 (889)
Q Consensus 393 P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~ 472 (889)
|=|.+.....|..+..|+..++.++++|.|..+..++.+.+ + .++... .
T Consensus 2 pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~-----~-~~~~~~--------------~----------- 50 (101)
T PF07705_consen 2 PDLTVSITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRL-----Y-LDGNSV--------------S----------- 50 (101)
T ss_dssp --EEE-EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEE-----E-ETTEEE--------------E-----------
T ss_pred CCEEEEEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEE-----E-ECCcee--------------c-----------
Confidence 55667666678899999999999999999999999888872 1 211100 0
Q ss_pred CCceeeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEe
Q 002714 473 MPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYE 515 (889)
Q Consensus 473 ~~~~v~~~p~~~~L~pGes~~~Plwlra~~~G~~~l~~LfyYe 515 (889)
...+ ..|.||++.++.+-+..+.+|.+.+.+.+-++
T Consensus 51 -~~~i------~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD~~ 86 (101)
T PF07705_consen 51 -TVTI------PSLAPGESETVTFTWTPPSPGSYTIRVVIDPD 86 (101)
T ss_dssp -EEEE------SEB-TTEEEEEEEEEE-SS-CEEEEEEEESTT
T ss_pred -cEEE------CCcCCCcEEEEEEEEEeCCCCeEEEEEEEeeC
Confidence 0011 45899999999999999999999988887543
No 16
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.55 E-value=0.74 Score=49.74 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=73.1
Q ss_pred HHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHH
Q 002714 74 AVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHD 153 (889)
Q Consensus 74 AlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~ 153 (889)
-=+|+.|-..|... ...|....=.+.=|.-|.+.|+...|+.+|+.+...|...+|..+...+...|-+.+..+|+.+
T Consensus 158 I~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 158 IELLEKAYEQFKKY--GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 44677777777543 3466677777778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 002714 154 IAVAHMLE 161 (889)
Q Consensus 154 ~Av~h~l~ 161 (889)
..+...++
T Consensus 236 ~~l~~~le 243 (247)
T PF11817_consen 236 DYLTTSLE 243 (247)
T ss_pred HHHHHHHH
Confidence 98876543
No 17
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.28 E-value=0.47 Score=41.03 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=46.5
Q ss_pred HhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccc-cchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 101 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSH-IKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 101 LAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~-~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.=|..|...|+...|+.+|++|+.+++.-+=.. ..-...+.||..+..+|+++.|++++..
T Consensus 10 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 10 NLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 346778899999999999999999976554111 1123578899999999999999988754
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=89.46 E-value=7.1 Score=39.28 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-hhhHHHHHHHHhhhhccCC--------------CcchhhHHHHHHhhH
Q 002714 40 RCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKP--------------PMLHKYGFHLVLSGD 104 (889)
Q Consensus 40 R~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~-l~sAlllEqaA~c~l~~~~--------------~~~RK~Af~~vLAg~ 104 (889)
++....+.++...|.+++|...+-++....+ ... ..-..+.+|...+. +......-.+..-|.
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD--VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 4445566777778889988888877765443 111 11222222322111 000111112233477
Q ss_pred hHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 105 RYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 105 ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.|.+.|+...|..+|.+|+...... .-..+.+|+.+...|+++.|+.++.+
T Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 144 CALKAGDFDKAEKYLTRALQIDPQR------PESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCC------hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8899999999999999999875442 12567889999999999999987754
No 19
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=88.82 E-value=1.3 Score=41.12 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=39.1
Q ss_pred ccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCCCcccCC
Q 002714 409 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 488 (889)
Q Consensus 409 GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~~~~L~p 488 (889)
+......|.|+|.|..++.. +|.+++|..+.+ -|..+.|.|
T Consensus 17 ~~~~~~~l~l~N~s~~~i~f-Kiktt~~~~y~v--------------------------------------~P~~G~i~p 57 (109)
T PF00635_consen 17 NKQQSCELTLTNPSDKPIAF-KIKTTNPNRYRV--------------------------------------KPSYGIIEP 57 (109)
T ss_dssp SS-EEEEEEEEE-SSSEEEE-EEEES-TTTEEE--------------------------------------ESSEEEE-T
T ss_pred CceEEEEEEEECCCCCcEEE-EEEcCCCceEEe--------------------------------------cCCCEEECC
Confidence 56699999999999998766 778888755432 244577999
Q ss_pred CCeEEEEEEEEec
Q 002714 489 ETPLLWPLWYRAA 501 (889)
Q Consensus 489 Ges~~~Plwlra~ 501 (889)
|++.++.|++++.
T Consensus 58 ~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 58 GESVEITITFQPF 70 (109)
T ss_dssp TEEEEEEEEE-SS
T ss_pred CCEEEEEEEEEec
Confidence 9999999999985
No 20
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=88.74 E-value=6.4 Score=38.50 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=60.1
Q ss_pred HHHHHHhCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--chhhHHHHHHHHhhhhccCCC-----------
Q 002714 24 FTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEE--PLHSAVMLEQASYCYLLSKPP----------- 90 (889)
Q Consensus 24 ~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~--~l~sAlllEqaA~c~l~~~~~----------- 90 (889)
+.......+. ..+|..+.|..+.++-..|.+++|...|-.+.... +-...+..=+.|.+++..+..
T Consensus 34 ~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~ 112 (145)
T PF09976_consen 34 AEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP 112 (145)
T ss_pred HHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 3344444443 26899999999999999999999999888877643 333455555666666543221
Q ss_pred cchhhHHHHHHhhHhHHhCCCcHHHHHHHHHH
Q 002714 91 MLHKYGFHLVLSGDRYKKCDQINHAIRTYRSA 122 (889)
Q Consensus 91 ~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A 122 (889)
..--.++..-+-|+-|.+.|+...|..+|+.|
T Consensus 113 ~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 113 DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 00111233335566666666666666666555
No 21
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.55 E-value=2.4 Score=44.55 Aligned_cols=315 Identities=16% Similarity=0.227 Sum_probs=166.4
Q ss_pred cccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCCCc
Q 002714 405 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 484 (889)
Q Consensus 405 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~~~ 484 (889)
.+|-||...+.+.+.|-+...++++-++++-.. .+. ...+|++.+....-+... . ++.
T Consensus 10 niflgetfs~yinv~nds~k~v~~i~lk~dlqt------ssq-rl~l~~s~~~~aei~~~~-------c--------~~~ 67 (348)
T KOG2625|consen 10 NIFLGETFSFYINVHNDSEKTVKDILLKADLQT------SSQ-RLNLPASNAAAAEIEPDC-------C--------EDD 67 (348)
T ss_pred ceeeccceEEEEEEecchhhhhhhheeeecccc------cce-eeccccchhhhhhcCccc-------c--------chh
Confidence 479999999999999999999999998876420 000 011121111000000000 0 011
Q ss_pred ccCCCCeEEEEEEEEec-CCceeEEEEEEEEecCCCCCCceEEEEEEEEEEEEeceeeEEEEEEeeccCC----ceEEEE
Q 002714 485 SIQGETPLLWPLWYRAA-VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRL----QQYLVR 559 (889)
Q Consensus 485 ~L~pGes~~~Plwlra~-~~G~~~l~~LfyYe~~~~~~~~~~R~lR~~~~i~V~pSL~vs~~~~~s~s~~----~~~ll~ 559 (889)
++ -|-- +-|.|-+-.-+.|...+ +.+|-| |-...+.|..-++|....-..-|.+ ++..|.
T Consensus 68 vi-----------~hevkeig~hilicavny~tq~-ge~myf---rkffkf~v~kpidvktkfynaesdlssv~~dvfle 132 (348)
T KOG2625|consen 68 VI-----------HHEVKEIGQHILICAVNYKTQA-GEKMYF---RKFFKFPVLKPIDVKTKFYNAESDLSSVNDDVFLE 132 (348)
T ss_pred hh-----------hHHHHhhccEEEEEEEeeeccC-ccchhH---Hhhccccccccccccceeecccccccccchhhhhh
Confidence 11 0111 35777777777786544 344544 5667788888888887654433332 345566
Q ss_pred EEEEeCCCCCceEEEEEEe-eecceEEEecCCCcccCCccccCccceEEEEEEEeecCCCCCCCCCCCCCCccccCceee
Q 002714 560 MDVVNQTSSENFQIHQLSS-VGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSL 638 (889)
Q Consensus 560 veV~N~~~~~~~~l~Qvs~-vS~~W~l~~l~~~~~i~~~~~l~p~q~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~d~~l 638 (889)
-+++|++.+..|. ..|+. -|-++.+..+...+ ..|+-++.| ...+| |
T Consensus 133 aqien~s~a~mfl-ekv~ldps~~ynvt~i~~~~--------e~gdcvstf-----------------g~~~~------l 180 (348)
T KOG2625|consen 133 AQIENMSNANMFL-EKVELDPSIHYNVTEIAHED--------EAGDCVSTF-----------------GSGAL------L 180 (348)
T ss_pred hhhhcccccchhh-hhhccCchheecceeecchh--------hcccccccc-----------------ccccc------c
Confidence 6788887765332 11111 01222222221100 011111000 00111 1
Q ss_pred cCCCccccccCCCcchhhhhhhhhhcccccCCCCcccEEEEecccccCCCCCCCCCccccceeeecccccCCCcEEEEE-
Q 002714 639 QGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLV- 717 (889)
Q Consensus 639 ~~~~~~~~~~s~~P~~~f~~~~~~~~~~~~~~~~~~~ii~~w~a~~~~~~~~~~~~~~~g~~h~~~~~~~~~~~i~~~l- 717 (889)
...+..++-+.-.|-+||+.---+- +.-..-=.+=+.|+.+..|.+. +.+ -...+-.-+-..++.++
T Consensus 181 kp~d~rq~l~cl~pk~d~~~~~gi~----k~lt~igkldi~wktnlgekgr-lqt-------s~lqriapgygdvrlsle 248 (348)
T KOG2625|consen 181 KPKDIRQFLFCLKPKADFAEKAGII----KDLTSIGKLDISWKTNLGEKGR-LQT-------SALQRIAPGYGDVRLSLE 248 (348)
T ss_pred CccchhhheeecCchHHHHHhhccc----cccceeeeeEEEeecccccccc-chH-------HHHHhhcCCCCceEEEee
Confidence 1111233344445666665332111 1111112344689987776552 111 00001011234566666
Q ss_pred ecCceeeccCCCCceeEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccC
Q 002714 718 DGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQL 797 (889)
Q Consensus 718 ~~p~~i~h~F~~~~c~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 797 (889)
.-|..+... .+ ..++-.|.|||+-.+|+..++-..
T Consensus 249 ~~p~~vdle--ep---f~iscki~ncseraldl~l~l~~~---------------------------------------- 283 (348)
T KOG2625|consen 249 AIPACVDLE--EP---FEISCKITNCSERALDLQLELCNP---------------------------------------- 283 (348)
T ss_pred ccccccccC--CC---eEEEEEEcccchhhhhhhhhhcCC----------------------------------------
Confidence 334444322 11 124556889999888887775331
Q ss_pred CccccccCCccCccCceEEeccccceEE-eCCCceeEEEeEEEEecceeeecCCcEEEEEE
Q 002714 798 PLNQVKRSSLLESVSPFIWSGSSASSVR-LQPMSTTDIAMKVCLFSPGTYDLSNYALNWKL 857 (889)
Q Consensus 798 ~~~~~~~p~~~~~~~~f~W~g~~~~~~~-l~p~~~~~~~L~~~~~~~GvYdl~~~~l~~~~ 857 (889)
. ++...|||.+-+++- |.|-+..++.|.+-=..-|.-.+++.|+.=++
T Consensus 284 --------n----nrhi~~c~~sg~qlgkl~ps~~l~~al~l~~~~~giqsisgiritdtf 332 (348)
T KOG2625|consen 284 --------N----NRHIHFCGISGRQLGKLHPSQHLCFALNLFPSTQGIQSISGIRITDTF 332 (348)
T ss_pred --------C----CceeEEeccccccccCCCCcceeeeEEeeccchhcceeecceEeehhh
Confidence 1 566899999999997 99999999999998888999999999987544
No 22
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=88.48 E-value=4.2 Score=50.54 Aligned_cols=114 Identities=11% Similarity=0.010 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhcc--------------CCCcchhhHHHHHHhhH
Q 002714 39 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLS--------------KPPMLHKYGFHLVLSGD 104 (889)
Q Consensus 39 lR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~--------------~~~~~RK~Af~~vLAg~ 104 (889)
..+-++.+++...+|.++||..+|-++.+..|-..+.....|-.++-.. ..| ..+-+..+-|.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p---~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS---SSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC---CCHHHHHHHHH
Confidence 4566788999999999999999999999877523333333333322111 112 23555666788
Q ss_pred hHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 105 RYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 105 ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.+.+.|+...|..||++|+. .+.. ..+....+|......|+.++|+..|.+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~--~~p~----~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSR--QHPE----FENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHhcchHHHHHHHHHHHh--cCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 89999999999999999997 3332 447889999999999999999887765
No 23
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=88.47 E-value=3.8 Score=54.00 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccc-hhhHHHHHHHHhhhh-----------ccCCCcchhh---------HHHHH
Q 002714 42 GLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYL-----------LSKPPMLHKY---------GFHLV 100 (889)
Q Consensus 42 ~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~-l~sAlllEqaA~c~l-----------~~~~~~~RK~---------Af~~v 100 (889)
.+..+.++...|.+++|...+-++...++ ...| +...+.+|. ..-++..++. ...+.
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a--~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 465 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA--VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLA 465 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence 34557888899999999999988886554 2222 222333332 1111111110 11123
Q ss_pred HhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 101 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 101 LAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.-|..|...|+...|+.+|++|+.+.-...| +++.+|+.+..+|+++.|++.|.+
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~------~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDPGSVW------LTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3577888999999999999999998766655 678999999999999999877654
No 24
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=88.27 E-value=6.9 Score=35.66 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=48.3
Q ss_pred HHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 100 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 100 vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
...|..|.+.|+...|+.+|..+...|.+..+ ...+.+.+|+.+..+|+.+.|++++.+
T Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 43 YWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK---APDALLKLGMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc---ccHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 44677789999999999999999998866432 234678999999999999999988754
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=88.03 E-value=8.3 Score=47.70 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=37.3
Q ss_pred hHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 103 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 103 g~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
|..+.+.|+...|+.+|++|+...-.. ..+++.+|+.+..+|+++.|+++|.+
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l~P~~------~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLATHPDL------PYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777888888888888888764332 23556677777777888877776644
No 26
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=86.90 E-value=1.4 Score=36.69 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=45.6
Q ss_pred hhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 102 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 102 Ag~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
-|..|.+.|+...|+++|++++..+-. .....+.+|+.+...|++++|+..|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 477889999999999999999988733 346789999999999999999987754
No 27
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=86.79 E-value=19 Score=43.27 Aligned_cols=143 Identities=14% Similarity=0.131 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHhCCCchhhhHHHHHH-HHHHHHhcCCHHHHHHHHHHHh-------CccchhhHHHHHHHHhhhhcc
Q 002714 16 AEYCMENAFTTYAKIGSSGQQNATRCGLW-WVEMLKARHQYKDAATVYFRIC-------GEEPLHSAVMLEQASYCYLLS 87 (889)
Q Consensus 16 ~~~~le~A~~~Y~~~~~~~~~~AlR~~ll-~~e~l~~~~~~~~Aa~~l~r~~-------~~~~l~sAlllEqaA~c~l~~ 87 (889)
+....+.|+..=-++-.. ....++..+. .+.++...+.|++|+..+-++. +++.-..|..+...|..|...
T Consensus 218 A~~l~k~Al~~l~k~~G~-~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~ 296 (508)
T KOG1840|consen 218 AEPLCKQALRILEKTSGL-KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ 296 (508)
T ss_pred HHHHHHHHHHHHHHccCc-cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 334445555442222222 2456666666 7888899999999988777655 344467899999999877643
Q ss_pred CCCcchh----------------------hHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCC--ccccchhhhhhHH
Q 002714 88 KPPMLHK----------------------YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGST--WSHIKDHVHFHIG 143 (889)
Q Consensus 88 ~~~~~RK----------------------~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~--W~~~~dhi~~~lg 143 (889)
+.++. -+..+--.|..+...+....|..-|..|+.+|.... =.....++.-.||
T Consensus 297 --GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~ 374 (508)
T KOG1840|consen 297 --GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLA 374 (508)
T ss_pred --CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 22222 344555667788889999999999999999999321 0112235788999
Q ss_pred HHHHHhCCHHHHHHHHHH
Q 002714 144 QWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 144 r~~~~l~~~~~Av~h~l~ 161 (889)
+.+++.|.+.+|...+-.
T Consensus 375 ~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 375 ELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHHHhcchhHHHHHHHH
Confidence 999999999999876543
No 28
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=86.37 E-value=18 Score=37.96 Aligned_cols=121 Identities=15% Similarity=0.094 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc--hhhHHHHHHHHhhhhcc-----------------------CCCc
Q 002714 37 NATRCGLWWVEMLKARHQYKDAATVYFRICGEEP--LHSAVMLEQASYCYLLS-----------------------KPPM 91 (889)
Q Consensus 37 ~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~--l~sAlllEqaA~c~l~~-----------------------~~~~ 91 (889)
.+.++.+..+.++...|.+++|...+-++....| -.....+...+.||... ..|.
T Consensus 68 ~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 68 YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445667778888889999999998888875432 12222233444444321 0111
Q ss_pred c--hhhHHHH------------HHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHH
Q 002714 92 L--HKYGFHL------------VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVA 157 (889)
Q Consensus 92 ~--RK~Af~~------------vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~ 157 (889)
. ...++.. ..-|..|.+.|+...|+.-|..|+..|.+..| ..-..+.+|+.+..+|+++.|+.
T Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 148 SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA---TEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc---hHHHHHHHHHHHHHcCCHHHHHH
Confidence 0 1111111 12356788999999999999999999887643 23467899999999999999998
Q ss_pred HHH
Q 002714 158 HML 160 (889)
Q Consensus 158 h~l 160 (889)
++.
T Consensus 225 ~~~ 227 (235)
T TIGR03302 225 AAA 227 (235)
T ss_pred HHH
Confidence 764
No 29
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=86.35 E-value=4.6 Score=46.09 Aligned_cols=86 Identities=12% Similarity=0.046 Sum_probs=60.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhh
Q 002714 47 EMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVY 126 (889)
Q Consensus 47 e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY 126 (889)
..+-..|.|++|...+-++...++-. +..+..-|..|.+.|....|+.+|++|+.+.
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~-----------------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNN-----------------------AELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33344566777777776666555411 1122344556677799999999999999986
Q ss_pred cCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 127 KGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 127 ~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
... ...++.+|..++.+|+++.|+.+|.+
T Consensus 67 P~~------~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 67 PSL------AKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred cCC------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 432 23678999999999999999988865
No 30
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.25 E-value=1.5 Score=36.84 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=47.0
Q ss_pred HHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhC-CHHHHHHHHHH
Q 002714 99 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLG-MHDIAVAHMLE 161 (889)
Q Consensus 99 ~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~-~~~~Av~h~l~ 161 (889)
+..-|..|...|+...|+.+|.+|+.+-.. ..-+++.+|..+..+| +++.|++++..
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 456688888999999999999999997422 2237899999999999 79999988753
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=85.91 E-value=10 Score=46.23 Aligned_cols=134 Identities=11% Similarity=-0.010 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhCCC---chhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-hhh-----HHHH------HHHHh
Q 002714 18 YCMENAFTTYAKIGSS---GQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHS-----AVML------EQASY 82 (889)
Q Consensus 18 ~~le~A~~~Y~~~~~~---~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~-l~s-----Alll------EqaA~ 82 (889)
..++.|+..|.+.-.. .+ ....+....+.++...|.+++|-..+-++...++ ... |.++ +.|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~-~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGE-KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3577788777655421 12 2223445556666778889888888888776553 221 1111 12222
Q ss_pred hhhcc--CCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHH
Q 002714 83 CYLLS--KPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHML 160 (889)
Q Consensus 83 c~l~~--~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l 160 (889)
+|-.. ..| ..+--+..-|..|...|+...|+.||.+|+.+.... ...++.+|..+..+|+++.|+.+|.
T Consensus 387 ~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~------~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 387 DFDKALKLNS---EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF------IFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred HHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22111 111 112233445667888888888999998888875432 2345667777777777777776654
Q ss_pred H
Q 002714 161 E 161 (889)
Q Consensus 161 ~ 161 (889)
+
T Consensus 458 ~ 458 (615)
T TIGR00990 458 R 458 (615)
T ss_pred H
Confidence 4
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=85.88 E-value=11 Score=45.39 Aligned_cols=108 Identities=13% Similarity=0.008 Sum_probs=61.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCC---------------CcchhhHHHHHHhhHhHHhC
Q 002714 45 WVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKP---------------PMLHKYGFHLVLSGDRYKKC 109 (889)
Q Consensus 45 ~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~---------------~~~RK~Af~~vLAg~ry~k~ 109 (889)
.+.++...|.+++|...+-++...+|- ++-.+-..|.+|+.... |..- ..++.+++- +...
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~--~~~~~~~~~-~~~~ 419 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA--AAGITKLWI-TYYH 419 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh--hhHHHHHHH-HHhc
Confidence 344556677888888888887765541 11111222333332211 2211 122333333 3446
Q ss_pred CCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 110 DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 110 g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
|+...|+.+|++++...... .-..+..+|..+..+|++++|.+++.+
T Consensus 420 g~~eeA~~~~~~~l~~~~p~-----~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQD-----NPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred cCHHHHHHHHHHHHHhcccc-----CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77888888888887654211 112457788888889999999887754
No 33
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=85.69 E-value=11 Score=45.92 Aligned_cols=112 Identities=11% Similarity=0.019 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCC------------cchhhHHHHHHhhHhHHhCC
Q 002714 43 LWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPP------------MLHKYGFHLVLSGDRYKKCD 110 (889)
Q Consensus 43 ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~------------~~RK~Af~~vLAg~ry~k~g 110 (889)
+..+.++...|.+++|...+-++...++-.. -++...|.+|...... ..-...+.+..-|.-|.+.|
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDP-DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence 4445556667788888887777766554111 2222233333322110 11123444555677788888
Q ss_pred CcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 111 QINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 111 ~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+...|+..|++|+..+-.. -.+++.+|..+..+|+++.|++.|.+
T Consensus 448 ~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 448 SIASSMATFRRCKKNFPEA------PDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred CHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8888888888888776433 23556778888888888888887755
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=85.60 E-value=12 Score=42.28 Aligned_cols=116 Identities=7% Similarity=-0.055 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHH------------HHHHhhhhcc--CCCc--chhhHHHHHHhh
Q 002714 40 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVML------------EQASYCYLLS--KPPM--LHKYGFHLVLSG 103 (889)
Q Consensus 40 R~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlll------------EqaA~c~l~~--~~~~--~RK~Af~~vLAg 103 (889)
.+....+.++...|.+++|-..+-++...++-...... ++|-.+|... ..|. ....+..+..-|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34455677778888899988888888764431111111 1122222111 1111 111222233445
Q ss_pred HhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 104 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 104 ~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.-|.+.|+...|+.+|++++..... .....+.+|+.+...|+++.|++.|.+
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~ 239 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQ------CVRASILLGDLALAQGDYAAAIEALER 239 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6778899999999999999987533 124667889999999999999887755
No 35
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=85.58 E-value=12 Score=39.06 Aligned_cols=62 Identities=8% Similarity=-0.046 Sum_probs=47.7
Q ss_pred hhHHHHHHhhHhHHhCCC--cHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 94 KYGFHLVLSGDRYKKCDQ--INHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 94 K~Af~~vLAg~ry~k~g~--~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
...++.-+|.-.|...|+ ...|..+|++|+..--+. -..++.||..++..|++++|++++.+
T Consensus 106 ~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~------~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 106 NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE------VTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666666656667776 589999999999864332 24678999999999999999988855
No 36
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=85.52 E-value=7.4 Score=40.31 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=68.1
Q ss_pred CCceEEEEEecCCccccCccEEEEEEEEEecCccccceEEEEecC--CceEEeccCCCCCCcchhhhhccccccccccCC
Q 002714 391 SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSH--PRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGG 468 (889)
Q Consensus 391 ~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~--p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~ 468 (889)
.-|+|-++=.-++..+..|+-..+.++|.|.|..++.++.+.=+. |+.|.+.+.
T Consensus 19 ~~a~llv~K~il~~~~v~g~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG------------------------ 74 (181)
T PF05753_consen 19 SPARLLVSKQILNKYLVEGEDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSG------------------------ 74 (181)
T ss_pred CCcEEEEEEeeccccccCCcEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccC------------------------
Confidence 456666665557788999999999999999999999999886421 122221111
Q ss_pred CCCCCCceeeecCCCcccCCCCeEEEEEEEEecCCceeEE-EEEEEEecCC
Q 002714 469 NFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISL-SITIYYEMGD 518 (889)
Q Consensus 469 ~~~~~~~~v~~~p~~~~L~pGes~~~Plwlra~~~G~~~l-~~LfyYe~~~ 518 (889)
. ... ....|.||+.++.-+-+|+...|.+.+ ...+.|...+
T Consensus 75 ~-----~s~----~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~~~ 116 (181)
T PF05753_consen 75 S-----LSA----SWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRDSE 116 (181)
T ss_pred c-----eEE----EEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEECCC
Confidence 0 000 135789999999999999889999998 4557776554
No 37
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=84.70 E-value=7.2 Score=45.27 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=45.5
Q ss_pred HHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcC--CCccccchhhhhhHHHHHHHhCCHHHHHHHHH
Q 002714 96 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG--STWSHIKDHVHFHIGQWYAVLGMHDIAVAHML 160 (889)
Q Consensus 96 Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~--~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l 160 (889)
+-=+.+-|.-+.+.++...|+.+.++|....-. ..| +.|++.|..+||++.|+.-+-
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W--------~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETW--------YQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHH--------HHHHHHHHhcCCHHHHHHHHh
Confidence 444456677778888899999999999988655 345 789999999999999986553
No 38
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=84.60 E-value=7.3 Score=38.36 Aligned_cols=87 Identities=13% Similarity=0.181 Sum_probs=63.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhh
Q 002714 46 VEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSV 125 (889)
Q Consensus 46 ~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~v 125 (889)
+..+..+|.+++|...+-++...++- .+..|+- =|..+.+.|+...|+.||.+|+..
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~----------------------~~~a~~~-lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPW----------------------SWRAHIA-LAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC----------------------cHHHHHH-HHHHHHHHhhHHHHHHHHHHHHhc
Confidence 55667889999998877776655541 1122222 244566788999999999999975
Q ss_pred hcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 126 YKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 126 Y~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
..+ ....++.+|..+..+|++++|+..|..
T Consensus 88 --~p~----~~~a~~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 88 --DAS----HPEPVYQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred --CCC----CcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 232 235788999999999999999988855
No 39
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=84.58 E-value=10 Score=35.92 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHH
Q 002714 40 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTY 119 (889)
Q Consensus 40 R~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy 119 (889)
...+..+..+-..|.+++|...+-++...++ . ..-.....|..|.+.|+...|..+|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--------------------~---~~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDP--------------------Y---NSRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--------------------C---cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666667888888776655544333 0 1112233466677778889999999
Q ss_pred HHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 120 RSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 120 ~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.+|..+... ....++.+|..+...|+++.|+++|.+
T Consensus 75 ~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 75 ALAAALDPD------DPRPYFHAAECLLALGEPESALKALDL 110 (135)
T ss_pred HHHHhcCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999987422 224568899999999999999988855
No 40
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=84.08 E-value=8.6 Score=31.74 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=58.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHh
Q 002714 45 WVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVS 124 (889)
Q Consensus 45 ~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~ 124 (889)
.+.++...|.+++|...+-++....+-.. ..+..-|.-|...|....|+.+|..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNA-----------------------DAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556778877777666554433000 1122334445555888899999999998
Q ss_pred hhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 125 VYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 125 vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
...... ...+.+|..+...|+.+.|..++.+
T Consensus 63 ~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 63 LDPDNA------KAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred CCCcch------hHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 765443 4678899999999999999888754
No 41
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=83.94 E-value=7.7 Score=38.82 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCcc--chhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHH
Q 002714 43 LWWVEMLKARHQYKDAATVYFRICGEE--PLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 120 (889)
Q Consensus 43 ll~~e~l~~~~~~~~Aa~~l~r~~~~~--~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~ 120 (889)
+..+.++...|.+++|-.++-++.... +...+. .| .--|..|.+.|+...|+.+|.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~---------------------~~-~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSY---------------------IL-YNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHH---------------------HH-HHHHHHHHHcCCHHHHHHHHH
Confidence 444555666788888888777665432 111111 11 223667788899999999999
Q ss_pred HHHhhhcCCCcccc-chhhhhhHHHHHHHhCCHHHHHHHH
Q 002714 121 SAVSVYKGSTWSHI-KDHVHFHIGQWYAVLGMHDIAVAHM 159 (889)
Q Consensus 121 ~A~~vY~~~~W~~~-~dhi~~~lgr~~~~l~~~~~Av~h~ 159 (889)
+|+.+.......+. --.++..+|+.+..+|+++.|+..+
T Consensus 97 ~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 97 QALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 99988554432111 1235666777777899988776554
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=82.05 E-value=21 Score=35.76 Aligned_cols=118 Identities=10% Similarity=-0.039 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCC------------cchhhHHHHHHhhHhH
Q 002714 39 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPP------------MLHKYGFHLVLSGDRY 106 (889)
Q Consensus 39 lR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~------------~~RK~Af~~vLAg~ry 106 (889)
.+.....+.++...|.+++|...+-++...++- .+..+-..|.+|...... ...+...-...-|.-|
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 344444555666677788887777776654431 111111223333322110 0011122333447778
Q ss_pred HhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 107 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 107 ~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
...|+...|+..|.+|....... -..+..+.+|..+...|+++.|.+.+.+
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYP----QPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccc----cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 89999999999999998742211 1235677889999999999999988865
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=81.52 E-value=12 Score=48.38 Aligned_cols=106 Identities=9% Similarity=-0.120 Sum_probs=71.8
Q ss_pred HHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCC-----cch-------hhHHHHHHhhHhHHhCCCcHHH
Q 002714 48 MLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPP-----MLH-------KYGFHLVLSGDRYKKCDQINHA 115 (889)
Q Consensus 48 ~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~-----~~R-------K~Af~~vLAg~ry~k~g~~~~A 115 (889)
.+...|.+++|...+-++...++- .. ..-..|.++...... .+| ..+.....-|..+...|+...|
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P~-~~-a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAPS-AN-AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC-HH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 334558999999999988876551 12 222333333322111 011 1123445556788899999999
Q ss_pred HHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 116 IRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 116 ~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+.+|++|+...-+. -.+++.+|..+..+|+++.|+++|.+
T Consensus 663 i~~l~~AL~l~P~~------~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 663 REMLERAHKGLPDD------PALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999875322 25789999999999999999998866
No 44
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=81.27 E-value=25 Score=39.52 Aligned_cols=119 Identities=15% Similarity=0.028 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCccc---hhhHHHHHHHHhhhhccCCC-------------cchhhHHHHHHhhH
Q 002714 41 CGLWWVEMLKARHQYKDAATVYFRICGEEP---LHSAVMLEQASYCYLLSKPP-------------MLHKYGFHLVLSGD 104 (889)
Q Consensus 41 ~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~---l~sAlllEqaA~c~l~~~~~-------------~~RK~Af~~vLAg~ 104 (889)
+....+.++...|.+++|...+-++....+ ...+..+...|.+|...... .......+..| |.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l-a~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQL-LE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHH-HH
Confidence 334456677788888888877666654321 11223344555555532210 00111122222 45
Q ss_pred hHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 105 RYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 105 ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
-|.+.|+...|+.+|+.+........+. ...+.+..+|..+...|+++.|+++|.+
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRV-EIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788899999999999888765433221 2234566788888899999999888755
No 45
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=81.00 E-value=16 Score=44.95 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=16.1
Q ss_pred HHHHHhhHhHHhCCCcHHHHHHHHHHHhh
Q 002714 97 FHLVLSGDRYKKCDQINHAIRTYRSAVSV 125 (889)
Q Consensus 97 f~~vLAg~ry~k~g~~~~A~rcy~~A~~v 125 (889)
.-+.+.|..|.+.|+...|..+|.+|...
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 154 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAI 154 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33445555555566666666666655544
No 46
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=80.94 E-value=19 Score=44.33 Aligned_cols=114 Identities=16% Similarity=0.027 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCC------------cchhhHHHHHHhhHhH
Q 002714 39 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPP------------MLHKYGFHLVLSGDRY 106 (889)
Q Consensus 39 lR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~------------~~RK~Af~~vLAg~ry 106 (889)
.+.....+.++...|.+++|...+-++...++-... .+-..|.+++..... ......--..+.|+-|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (899)
T TIGR02917 125 AELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY-AKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 344455555566667777777777776654431111 112223333222110 0011122233446777
Q ss_pred HhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHH
Q 002714 107 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 159 (889)
Q Consensus 107 ~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~ 159 (889)
.+.|....|+.+|++|+..... .....+.++..+...|+++.|...+
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~~~~~~~~~g~~~~A~~~~ 250 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALRPN------NPAVLLALATILIEAGEFEEAEKHA 250 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888888765322 2245566666667777777776554
No 47
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=80.56 E-value=13 Score=49.17 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=45.8
Q ss_pred hhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 102 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 102 Ag~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
-|+.+.+.|+...|+.+|++|+...... ...++.||+.+...|+++.|+++|.+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTD------SYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4888999999999999999999986433 24677899999999999999988755
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.67 E-value=12 Score=44.62 Aligned_cols=57 Identities=30% Similarity=0.425 Sum_probs=49.1
Q ss_pred HHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 99 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 99 ~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.+.=||.|.|++...-|+.||++|+.+ ..+.| -.|-++|-.+..+|+++.|+.||=.
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~-----~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDA-----STHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCch-----hHHHHHHHHHHHhcChHHHHHHHHH
Confidence 677899999999999999999999976 33433 4678999999999999999999854
No 49
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=79.24 E-value=6.9 Score=39.40 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHH
Q 002714 74 AVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHD 153 (889)
Q Consensus 74 AlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~ 153 (889)
+++-|.+.. +..-.+..+++-.+ ..-|..|...|....|+.||++|+.......| ...+++.+|..+..+|+++
T Consensus 16 ~~~~~~~~~--~~~~~~~~~~a~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~ 89 (172)
T PRK02603 16 TVMADLILK--ILPINKKAKEAFVY-YRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHD 89 (172)
T ss_pred HHHHHHHHH--HcccccHhhhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHH
Confidence 455555433 11222344444433 45557778889999999999999988665543 1257899999999999999
Q ss_pred HHHHHHHH
Q 002714 154 IAVAHMLE 161 (889)
Q Consensus 154 ~Av~h~l~ 161 (889)
.|++++.+
T Consensus 90 ~A~~~~~~ 97 (172)
T PRK02603 90 KALEYYHQ 97 (172)
T ss_pred HHHHHHHH
Confidence 99998865
No 50
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=78.53 E-value=11 Score=32.27 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHH
Q 002714 37 NATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAI 116 (889)
Q Consensus 37 ~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~ 116 (889)
...++....+.++...|.|++|-..+-++.... ..-++.....|.-+.-.|.-|.+.|+...|+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------------~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 66 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIE----------------EQLGDDHPDTANTLNNLGECYYRLGDYEEAL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH----------------HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345677788888999999999988665544321 1112233344556666777888999999999
Q ss_pred HHHHHHHhhhc
Q 002714 117 RTYRSAVSVYK 127 (889)
Q Consensus 117 rcy~~A~~vY~ 127 (889)
.+|++|+.+|+
T Consensus 67 ~~~~~al~i~~ 77 (78)
T PF13424_consen 67 EYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhc
Confidence 99999999985
No 51
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=77.93 E-value=8.9 Score=33.39 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=41.0
Q ss_pred cCCceEEEEEecCCccccCccEEEEEEEEEecCccccceEEEEecCCceEEe
Q 002714 390 KSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSI 441 (889)
Q Consensus 390 ~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~ 441 (889)
..-+.+.+.-..-+..+.-||...+.|+++|.|..++.++.+.-.-|.-+.|
T Consensus 21 ~~~~~~~~~k~~~~~~~~~Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 21 VAIPDLSITKTVNPSTANPGDTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred cCCCCEEEEEecCCCcccCCCEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 3445555655556888999999999999999999999999988766654443
No 52
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=77.44 E-value=19 Score=45.04 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-cchhhHHHHHHHHhhhhccCCCcch
Q 002714 15 EAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGE-EPLHSAVMLEQASYCYLLSKPPMLH 93 (889)
Q Consensus 15 ~~~~~le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~-~~l~sAlllEqaA~c~l~~~~~~~R 93 (889)
++.++|-.|-..|.. +. -.+|.-+..|+.|.......|=..|-.+-+. +++-.|+-.+.+|.. | +|. -+
T Consensus 138 ~l~~ll~eAN~lfar-g~-----~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L--~p~-d~ 207 (895)
T KOG2076|consen 138 ELRQLLGEANNLFAR-GD-----LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-L--NPK-DY 207 (895)
T ss_pred HHHHHHHHHHHHHHh-CC-----HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh-c--CCC-Ch
Confidence 577777777777766 32 2344455567777766665555555444432 234444444444331 3 222 22
Q ss_pred hhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 94 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 94 K~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
-||..+| +...+.|...+|.-||.+|.+ ++...|.++.+. ..++..+|+...|..-|+.
T Consensus 208 --e~W~~la-dls~~~~~i~qA~~cy~rAI~-~~p~n~~~~~er-----s~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 208 --ELWKRLA-DLSEQLGNINQARYCYSRAIQ-ANPSNWELIYER-----SSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred --HHHHHHH-HHHHhcccHHHHHHHHHHHHh-cCCcchHHHHHH-----HHHHHHhChHHHHHHHHHH
Confidence 7887664 778999999999999999998 567779888443 4457788888888765544
No 53
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=77.43 E-value=8.5 Score=33.83 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=32.3
Q ss_pred hHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 103 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 103 g~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
|..|.+.|+...|+..+++ ... ... ...+++.+|+.+..+|++++|+++|-+
T Consensus 32 a~~~~~~~~y~~A~~~~~~-~~~-~~~-----~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK-LKL-DPS-----NPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC-HTH-HHC-----HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH-hCC-CCC-----CHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3344556666677777666 221 111 224566779999999999999988753
No 54
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=77.34 E-value=16 Score=42.86 Aligned_cols=84 Identities=11% Similarity=0.020 Sum_probs=56.7
Q ss_pred cCccEEEEEEE-EEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCCCcc
Q 002714 407 YAGDLRHLVLE-LKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGIS 485 (889)
Q Consensus 407 l~GEi~~~~l~-L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~~~~ 485 (889)
..||...=.|. |.|.|+..|..=|.....+..+ +... ........|+ ...++
T Consensus 244 ~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~--~~~~------------------------~~~~~~F~Fd-~~~gv 296 (426)
T PF14646_consen 244 HPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNF--GSLF------------------------RAQDQRFYFD-TSSGV 296 (426)
T ss_pred ccCceeeEEEEEEecCCceEEEEEEEeccccccc--chhc------------------------cccCCeEEEe-CCCCE
Confidence 66888888888 9999999887766665543111 1000 0001123443 24688
Q ss_pred cCCCCeEEEEEEEEecCCceeEEEEEEEEecC
Q 002714 486 IQGETPLLWPLWYRAAVPGKISLSITIYYEMG 517 (889)
Q Consensus 486 L~pGes~~~Plwlra~~~G~~~l~~LfyYe~~ 517 (889)
|.||+++.+++|+++..+|...=.|.+.-.+.
T Consensus 297 ilPGe~~~~~~~F~s~~~Gif~E~W~L~t~P~ 328 (426)
T PF14646_consen 297 ILPGETRNFPFMFKSRKVGIFKERWELRTFPP 328 (426)
T ss_pred ECCCceEEEEEEEeCCCceEEEEEEEEEEecc
Confidence 99999999999999999998877777665433
No 55
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=75.33 E-value=1.6 Score=54.50 Aligned_cols=118 Identities=15% Similarity=0.093 Sum_probs=86.1
Q ss_pred HHHHHHHHHhCCCc--hhhh--HHHHHHHHHHHHhcCC--HHHHHHHHHH--HhCcc----chhhHHHHHHHHhhhhcc-
Q 002714 21 ENAFTTYAKIGSSG--QQNA--TRCGLWWVEMLKARHQ--YKDAATVYFR--ICGEE----PLHSAVMLEQASYCYLLS- 87 (889)
Q Consensus 21 e~A~~~Y~~~~~~~--~~~A--lR~~ll~~e~l~~~~~--~~~Aa~~l~r--~~~~~----~l~sAlllEqaA~c~l~~- 87 (889)
..-+..|..+-..- ..|| +|++++-.+-+..... .+.|+.|.-+ ...+. .+..|.+.-|...-|...
T Consensus 631 ~e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a~s~~~~~~l~n~s~~~~~~~~a~i~~~~t~r~~~~s 710 (960)
T KOG1938|consen 631 SEMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLAASWPYFAVLENESHRKGKMNAANISQQETTRFESGS 710 (960)
T ss_pred HhhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHHhcChhhhhcccccccccccCHhhhhhhhhhhhcccc
Confidence 33444444443321 2488 9999998888877665 7889998833 22222 245566666666544432
Q ss_pred --------CCCcchhhHHHHHHhhHh---HHhCCCcHHHHHHHHHHHhhhcCCCccccchhh
Q 002714 88 --------KPPMLHKYGFHLVLSGDR---YKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHV 138 (889)
Q Consensus 88 --------~~~~~RK~Af~~vLAg~r---y~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi 138 (889)
.+.++||.|||+.+++.. |..+-+...+.-|.+.|-..|...+|....+|+
T Consensus 711 ~~~~d~~l~g~r~rr~alW~r~~a~~~~~w~r~~~~r~~~~~~n~a~~~y~~i~~~~~s~~~ 772 (960)
T KOG1938|consen 711 GSDEDIVLDGGRRRRAALWFRLSAEASKPWLRQRQWRRASWCLNTAKSTYSKIHWLSLSECI 772 (960)
T ss_pred CCCcccccCCCceeeeeeeEecccccccchHHhhhhhhhhhhhhccccceeeeeeeehhhhh
Confidence 346899999999999999 999888888999999999999999999888887
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=75.28 E-value=46 Score=40.04 Aligned_cols=141 Identities=21% Similarity=0.254 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHHhCC-CchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHh-------CccchhhHHHHHHHHhhhh
Q 002714 14 KEAEYCMENAFTTYAKIGS-SGQQNATRCGLWWVEMLKARHQYKDAATVYFRIC-------GEEPLHSAVMLEQASYCYL 85 (889)
Q Consensus 14 ~~~~~~le~A~~~Y~~~~~-~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~-------~~~~l~sAlllEqaA~c~l 85 (889)
+++..|+|.|+..|.+.-. .++.-|..-. ..+-++...+.+++|-..+-+.. +++...-|=.-.+.|.+|+
T Consensus 300 ~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~-~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~ 378 (508)
T KOG1840|consen 300 AEAEEYCERALEIYEKLLGASHPEVAAQLS-ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL 378 (508)
T ss_pred HHHHHHHHHHHHHHHHhhccChHHHHHHHH-HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 6788999999999988322 1122332222 23334567788888876666544 3334577888899999999
Q ss_pred ccCCC-----cchhh---------------HHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchh-----hhh
Q 002714 86 LSKPP-----MLHKY---------------GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDH-----VHF 140 (889)
Q Consensus 86 ~~~~~-----~~RK~---------------Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dh-----i~~ 140 (889)
.+.+- +++|+ +..+-.=|..|...+++.-|.+-|.+|..+++..| .+| ...
T Consensus 379 ~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g----~~~~~~~~~~~ 454 (508)
T KOG1840|consen 379 KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG----PDHPDVTYTYL 454 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC----CCCCchHHHHH
Confidence 87552 33332 23333345556888999999999999999996655 344 456
Q ss_pred hHHHHHHHhCCHHHHHHHH
Q 002714 141 HIGQWYAVLGMHDIAVAHM 159 (889)
Q Consensus 141 ~lgr~~~~l~~~~~Av~h~ 159 (889)
.|+..|..+|+++.|++..
T Consensus 455 nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 455 NLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHHHHHHHcccHHHHHHHH
Confidence 7889999999999998643
No 57
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.51 E-value=25 Score=38.26 Aligned_cols=139 Identities=16% Similarity=0.140 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhCccchhhHHHHHHHHhhhhccC
Q 002714 16 AEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQ-------YKDAATVYFRICGEEPLHSAVMLEQASYCYLLSK 88 (889)
Q Consensus 16 ~~~~le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~-------~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~ 88 (889)
...++|.|-..|-+...- --|--|.+-..+.+..... |+.|+. |.|-..+=+ -.+.+.|.|...|+...
T Consensus 30 aas~yekAAvafRnAk~f--eKakdcLlkA~~~yEnnrslfhAAKayEqaam-Lake~~kls-Evvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKF--EKAKDCLLKASKGYENNRSLFHAAKAYEQAAM-LAKELSKLS-EVVDLYEKASELYVECG 105 (308)
T ss_pred hHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHHHHHHhH-HHHHHHHHHHHHHHHhC
Confidence 445778888888766542 2233344444433333222 333333 333222212 35677888888777544
Q ss_pred CCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 89 PPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 89 ~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.| --+|+-+==||.. .+.-++..|+..|.+|+.|++..+-..-.-.+.-.++|.+..+..+++|-..|++
T Consensus 106 sp--dtAAmaleKAak~-lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 106 SP--DTAAMALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred Cc--chHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 33 3455555445543 5667899999999999999998762222222344556777788888888766665
No 58
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=74.46 E-value=18 Score=31.67 Aligned_cols=67 Identities=27% Similarity=0.338 Sum_probs=39.2
Q ss_pred ecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee-EE
Q 002714 242 VAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD-IS 320 (889)
Q Consensus 242 vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~~~-i~ 320 (889)
..||.+.+.+.++|.-..++ .+++|.... +.+. .. . ..... -.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~--~~v~~~l~~-P~GW-~~--------------~------------------~~~~~~~~ 45 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPL--TNVSLSLSL-PEGW-TV--------------S------------------ASPASVPS 45 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-B--SS-EEEEE---TTS-E-----------------------------------EEEEE--
T ss_pred CCCCEEEEEEEEEECCCCce--eeEEEEEeC-CCCc-cc--------------c------------------CCcccccc
Confidence 36999999999999887664 677776654 3221 10 0 01112 27
Q ss_pred EcCCceEEEEEEEEeCce---eEEEEE
Q 002714 321 LGGAETILVQLMVTPKVE---GILKIV 344 (889)
Q Consensus 321 L~p~Etk~v~L~v~P~~~---G~L~I~ 344 (889)
|.|+++..+.+.|+|-.. |.+.|.
T Consensus 46 l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 46 LPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 999999999999999754 887664
No 59
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=74.26 E-value=33 Score=42.46 Aligned_cols=49 Identities=20% Similarity=0.089 Sum_probs=34.0
Q ss_pred HHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHH
Q 002714 100 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDI 154 (889)
Q Consensus 100 vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~ 154 (889)
.++|..+.+.|+...|+.+|++|+....+ .....+.+|..+...|++++
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~------~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLD------GAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCchh
Confidence 55677778888888888888888875321 12455667777777777764
No 60
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=73.68 E-value=43 Score=43.62 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=21.8
Q ss_pred HhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHH
Q 002714 104 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 159 (889)
Q Consensus 104 ~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~ 159 (889)
..+.+.|....|+.+|++|+..--+. -..+..+|......|+++.|+.+|
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNN------SNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444444444444444444432111 123444444444455555554444
No 61
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.48 E-value=14 Score=39.19 Aligned_cols=69 Identities=17% Similarity=0.102 Sum_probs=50.2
Q ss_pred hhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcC-------CCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 93 HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG-------STWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 93 RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~-------~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.+-|.-++-.|=-|...|......++|++|+..|.. ..=..-+.-+.|-+|.+...+|++++|++.|-+
T Consensus 115 s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~ 190 (214)
T PF09986_consen 115 SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSR 190 (214)
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 355555556666677777777778888888777764 111122336899999999999999999999976
No 62
>PF13584 BatD: Oxygen tolerance
Probab=73.08 E-value=1.8e+02 Score=34.42 Aligned_cols=101 Identities=14% Similarity=0.113 Sum_probs=56.3
Q ss_pred EEEcCCceEEEE---EEEEeCceeEEEEEEEEEEecccee-eEEEeecchhhhhcccccccccCCCCCceEEEEe--cC-
Q 002714 319 ISLGGAETILVQ---LMVTPKVEGILKIVGVRWRLSGSLV-GVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVI--KS- 391 (889)
Q Consensus 319 i~L~p~Etk~v~---L~v~P~~~G~L~I~Gv~~~L~~~v~-g~~~F~i~g~rl~~tK~kr~~~~~pd~rL~~~V~--~~- 391 (889)
..+.+..-..+. ..++|.++|.|.|.+..+++.-... +..+ ..|.. ..+.++.....+ .+.++|. |.
T Consensus 187 ~~i~G~~y~~~~~~~~~l~P~ksG~l~I~~~~~~~~~~~~~~~~~--~fg~~--~~~~~~~~~~s~--~~~i~V~plP~~ 260 (484)
T PF13584_consen 187 ERINGRRYRVIELRRYALFPQKSGTLTIPPATFEVTVSDPSGRRD--FFGGN--FGRSRPVSISSE--PLTITVKPLPAE 260 (484)
T ss_pred EEECCEEEEEEEEEEEEEEeCCceeEEecCEEEEEEEecccCccC--ccccc--cccceeEEecCC--CeEEEeccCCcc
Confidence 346665555555 6799999999999999888752111 1111 12211 011111122222 3344443 33
Q ss_pred ------Cce---EEEEEecCCccccCccEEEEEEEEEecCccc
Q 002714 392 ------LPK---LEGLIHPLPERAYAGDLRHLVLELKNQSDFS 425 (889)
Q Consensus 392 ------~P~---L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~p 425 (889)
.|. +++...--|..+-.||....+|+|+=.|..+
T Consensus 261 ~~p~~f~~aVg~f~l~~~~~~~~~~~Ge~vt~ti~i~g~Gn~~ 303 (484)
T PF13584_consen 261 GAPADFSGAVGNFSLSQSWDPTEVKVGEPVTRTITISGEGNLP 303 (484)
T ss_pred cCCCCcccceeEEEEEEEcCcccccCCCeEEEEEEEEEEcchh
Confidence 122 3333222267899999999999998777654
No 63
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=72.69 E-value=55 Score=38.58 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=45.7
Q ss_pred HHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 100 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 100 vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+-=|+-|+|.++..-|+.||.+|..+=. .+.-+...||+++..+++...|...+..
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3348999999999999999999987522 2557889999999999999999876644
No 64
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=72.49 E-value=12 Score=43.71 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=34.6
Q ss_pred hHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 103 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 103 g~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
|..|.-.+.+..|+..|++|... ++| +.-+-.+||+.+..++++++|++.|-+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~---kPn---DsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALEL---KPN---DSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhc---CCC---chHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 44455555555555555555443 333 224778999999999999999988755
No 65
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=72.45 E-value=11 Score=40.96 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=47.6
Q ss_pred hhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCC-------Cccccc---------------------hhhhhhHHHH
Q 002714 94 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGS-------TWSHIK---------------------DHVHFHIGQW 145 (889)
Q Consensus 94 K~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~-------~W~~~~---------------------dhi~~~lgr~ 145 (889)
..+..++..|.-|.+.|+...|++||++|+...-+. .|.+++ .-+...+|..
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 456667777888999999999999999999987652 233321 1145567777
Q ss_pred HHHhCCHHHHHHHHHH
Q 002714 146 YAVLGMHDIAVAHMLE 161 (889)
Q Consensus 146 ~~~l~~~~~Av~h~l~ 161 (889)
+..+|+.+.|+.+|.+
T Consensus 224 ~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHT-HHHHHHHHHH
T ss_pred hccccccccccccccc
Confidence 8888888888887755
No 66
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=72.25 E-value=8.3 Score=32.06 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=40.7
Q ss_pred HhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 107 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 107 ~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.+.|+...|++.|.+|+..+.+ ...+.+.+++.+...|+++.|.+.|.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3678899999999999998765 346778999999999999999988754
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=72.18 E-value=31 Score=41.72 Aligned_cols=52 Identities=12% Similarity=-0.102 Sum_probs=24.3
Q ss_pred hHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHH
Q 002714 103 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHML 160 (889)
Q Consensus 103 g~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l 160 (889)
|..|...|+...|+.+|++|+.+--... ..++.++..++..|++++|++.+.
T Consensus 379 g~~l~~~G~~~eAi~~~~~Al~l~P~~~------~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 379 GWNLFMAGQLEEALQTINECLKLDPTRA------AAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCh------hhHHHHHHHHHhccCHHHHHHHHH
Confidence 4455555555555555555555432210 111223333444555555555443
No 68
>COG1470 Predicted membrane protein [Function unknown]
Probab=72.08 E-value=2.2e+02 Score=33.88 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=35.2
Q ss_pred eeEEEcCCceEEEEEEEEeCceeE----EEEEEEEEEeccceeeEEEeecchh
Q 002714 317 VDISLGGAETILVQLMVTPKVEGI----LKIVGVRWRLSGSLVGVYNFESNLV 365 (889)
Q Consensus 317 ~~i~L~p~Etk~v~L~v~P~~~G~----L~I~Gv~~~L~~~v~g~~~F~i~g~ 365 (889)
..+.|.|.|+-.+.|++.|.++|. +.|.|+.| +.-.|.+.+.+.|-.|
T Consensus 37 ~~~~lr~~e~~~l~~~v~~~~~g~~~v~f~i~~~~~-~~v~v~~~~~l~it~p 88 (513)
T COG1470 37 KGLKLRPKESVELQFKVLPGKAGSYSVKFSIEGVPY-WTVNVYTSEPLQITLP 88 (513)
T ss_pred eeeEcCCCcceEEEEEEecCCCCcEEEEEEECCcee-EEEEEEecccEEEecc
Confidence 479999999999999999999984 77888877 4322334444444433
No 69
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=71.70 E-value=2.2e+02 Score=33.89 Aligned_cols=132 Identities=15% Similarity=0.162 Sum_probs=89.7
Q ss_pred cCCccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeec
Q 002714 401 PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF 480 (889)
Q Consensus 401 ~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~ 480 (889)
..|..+.-|+...+.+.|+|.|+.+++++.+...+|.-.. +.-.. + +. .
T Consensus 158 ~~~~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~~~~~~-~~i~~----------------------~-----~~---~ 206 (500)
T COG1361 158 SSPEAIIPGETNTLTLTIKNPGEGPAKNVSLSLESPTSYL-GPIYS----------------------A-----ND---T 206 (500)
T ss_pred cCccccCCCCccEEEEEEEeCCcccccceEEEEeCCccee-ccccc----------------------c-----cc---c
Confidence 4578899999999999999999999999999987732110 00000 0 00 0
Q ss_pred CCCcccCCCCeEEEEEEEEec---CCceeEEEEEEEEecCCCCCCceEEEEEEEEEEEEeceeeEEEEE-Eee--ccCCc
Q 002714 481 PEGISIQGETPLLWPLWYRAA---VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQI-SPW--SSRLQ 554 (889)
Q Consensus 481 p~~~~L~pGes~~~Plwlra~---~~G~~~l~~LfyYe~~~~~~~~~~R~lR~~~~i~V~pSL~vs~~~-~~s--~s~~~ 554 (889)
+--..|.||++..+.+-+-+- ..|...+++.+-|...+ ...+.-.....+.+.+...+.++. ... .-...
T Consensus 207 ~~i~~l~p~es~~v~f~v~~~~~a~~g~y~i~i~i~~~~~~----~~~~~~~~~~~i~~~~~~~~~is~v~~~p~~~~~~ 282 (500)
T COG1361 207 PYIGALGPGESVNVTFSVYAGSNAEPGTYTINLEITYKDEE----GSVKSPTITIGIVVVGEPKLDISNVKFDPGVIPLG 282 (500)
T ss_pred eeeeeeCCCceEEEEEEEEeecCCCCccEEEEEEEEEecCC----ccccccceEEEEecCCceeEEEEEEEecCCeeccc
Confidence 113568999999999999876 58999999999999844 223445556667777777766643 222 22345
Q ss_pred eEEEEEEEEeCCC
Q 002714 555 QYLVRMDVVNQTS 567 (889)
Q Consensus 555 ~~ll~veV~N~~~ 567 (889)
...+.+.+.|.+.
T Consensus 283 ~~~i~~~~~~~~~ 295 (500)
T COG1361 283 GVSIEITITIENS 295 (500)
T ss_pred eeEEEEEEEEEec
Confidence 5666666666544
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=70.90 E-value=26 Score=38.96 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=50.2
Q ss_pred HHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 97 FHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 97 f~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.-..+-|+-|...|+...|..+|.+++..+... ....-|.+..+++.+...|+++.|++.+-+
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS--SMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC--cchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334445999999999999999999999876542 122336778999999999999999988855
No 71
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=70.44 E-value=8.2 Score=27.45 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=21.8
Q ss_pred HHHHhhHhHHhCCCcHHHHHHHHHHHhhhc
Q 002714 98 HLVLSGDRYKKCDQINHAIRTYRSAVSVYK 127 (889)
Q Consensus 98 ~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~ 127 (889)
.+..-|.-|.+.|+...|++||++|+.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 344567778888888888888888887754
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=70.28 E-value=82 Score=34.78 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccc-hhhHH-----HH------HHHHhhhhc--cCCCcchhhHHHHHHhhHhHHh
Q 002714 43 LWWVEMLKARHQYKDAATVYFRICGEEP-LHSAV-----ML------EQASYCYLL--SKPPMLHKYGFHLVLSGDRYKK 108 (889)
Q Consensus 43 ll~~e~l~~~~~~~~Aa~~l~r~~~~~~-l~sAl-----ll------EqaA~c~l~--~~~~~~RK~Af~~vLAg~ry~k 108 (889)
...+.++...|.+++|...+-++...++ ...|. ++ +.|..+|-. ...|.-...++|.-++ ..
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~----~~ 177 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLA----ES 177 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----Hc
Confidence 4455667777889988888888876553 22222 11 222222211 0112211224444332 23
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCcccc-----------c--------------h------hhhhhHHHHHHHhCCHHHHHH
Q 002714 109 CDQINHAIRTYRSAVSVYKGSTWSHI-----------K--------------D------HVHFHIGQWYAVLGMHDIAVA 157 (889)
Q Consensus 109 ~g~~~~A~rcy~~A~~vY~~~~W~~~-----------~--------------d------hi~~~lgr~~~~l~~~~~Av~ 157 (889)
.++...|+..|.++........|... . + ..+|.||+.+..+|+.++|+.
T Consensus 178 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 178 KLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred cCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 56788888888776654433333210 0 0 147788999999999999999
Q ss_pred HHHH
Q 002714 158 HMLE 161 (889)
Q Consensus 158 h~l~ 161 (889)
+|-+
T Consensus 258 ~~~~ 261 (296)
T PRK11189 258 LFKL 261 (296)
T ss_pred HHHH
Confidence 8855
No 73
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=69.63 E-value=19 Score=36.47 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHH
Q 002714 20 MENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHL 99 (889)
Q Consensus 20 le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~ 99 (889)
+++|...|...|.-. .+-.|..+-.+-+++.+|.|.+|...+-++..-++ ..| .=+
T Consensus 51 l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-----------------ddp------~~~ 106 (157)
T PRK15363 51 FAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-----------------DAP------QAP 106 (157)
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------CCc------hHH
Confidence 344555555555432 34456666677777777888877776655554322 111 112
Q ss_pred HHhhHhHHhCCCcHHHHHHHHHHHhhhc
Q 002714 100 VLSGDRYKKCDQINHAIRTYRSAVSVYK 127 (889)
Q Consensus 100 vLAg~ry~k~g~~~~A~rcy~~A~~vY~ 127 (889)
.-+|.-|.+.|+...|..||+.|...-.
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 3466777789999999999999998764
No 74
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=69.40 E-value=76 Score=35.36 Aligned_cols=84 Identities=17% Similarity=0.310 Sum_probs=55.0
Q ss_pred ccccCccEEEEEEEEEecCccccceEEEE--ecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecC
Q 002714 404 ERAYAGDLRHLVLELKNQSDFSVKNLKMK--VSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFP 481 (889)
Q Consensus 404 ~~ll~GEi~~~~l~L~N~G~~pl~~l~v~--~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p 481 (889)
..+..|+..++.|.|+|.|..|+.=..|. ...|.- +...+. |.+ ..+
T Consensus 93 ~~l~aG~~~~~LvgftN~g~~~~~V~~i~aSl~~p~d------------~~~~iq------------NfT-------a~~ 141 (285)
T PF03896_consen 93 KKLPAGEPVKFLVGFTNKGSEPFTVESIEASLRYPQD------------YSYYIQ------------NFT-------AVR 141 (285)
T ss_pred ccccCCCeEEEEEEEEeCCCCCEEEEEEeeeecCccc------------cceEEE------------eec-------ccc
Confidence 56899999999999999998654222221 111100 000010 111 122
Q ss_pred CCcccCCCCeEEEEEEEEec---CCceeEEEEEEEEecCC
Q 002714 482 EGISIQGETPLLWPLWYRAA---VPGKISLSITIYYEMGD 518 (889)
Q Consensus 482 ~~~~L~pGes~~~Plwlra~---~~G~~~l~~LfyYe~~~ 518 (889)
-+..+.||+..++|-.+... .++...|.+.++|+..+
T Consensus 142 y~~~V~pg~~aT~~YsF~~~~~l~pr~f~L~i~l~y~d~~ 181 (285)
T PF03896_consen 142 YNREVPPGEEATFPYSFTPSEELAPRPFGLVINLIYEDSD 181 (285)
T ss_pred cCcccCCCCeEEEEEEEecchhcCCcceEEEEEEEEEeCC
Confidence 35779999999999999874 57788899999998554
No 75
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.20 E-value=34 Score=37.56 Aligned_cols=58 Identities=19% Similarity=0.111 Sum_probs=48.8
Q ss_pred HhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 101 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 101 LAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.-|..|.+.|++..|+..|+.+...|-+..| .....+.+|..+..+|+.+.|++.+-.
T Consensus 185 ~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~---~~dAl~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 185 WLGQLNYNKGKKDDAAYYFASVVKNYPKSPK---AADAMFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4467778889999999999999999988776 445678899999999999999887643
No 76
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=69.04 E-value=49 Score=41.78 Aligned_cols=129 Identities=12% Similarity=0.017 Sum_probs=82.1
Q ss_pred HHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-hhhHHHHHHHHhhhhccCCC-----cc--
Q 002714 21 ENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPP-----ML-- 92 (889)
Q Consensus 21 e~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~-l~sAlllEqaA~c~l~~~~~-----~~-- 92 (889)
+.|+..|.+..... -...+.....+.+++..|.+++|...+-++...+| -..+.+ -.|.+++..... ..
T Consensus 32 ~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~--~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 32 AEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR--GLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHCCCHHHHHHHHHH
Confidence 55566666655311 23444556667888999999999988888776553 222221 222333322111 01
Q ss_pred ------hhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHH
Q 002714 93 ------HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHML 160 (889)
Q Consensus 93 ------RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l 160 (889)
.... |+. -|..+...|+...|+.+|.+|+..+-+. ..+++.+|......|+.+.|++.+-
T Consensus 109 ~l~~~P~~~~-~~~-la~~l~~~g~~~~Al~~l~~al~~~P~~------~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 109 LVSGAPDKAN-LLA-LAYVYKRAGRHWDELRAMTQALPRAPQT------QQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHhCCCCHH-HHH-HHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHH
Confidence 1122 444 4888999999999999999999986543 2345567888888888888887664
No 77
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=68.13 E-value=13 Score=30.61 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=45.0
Q ss_pred HhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 101 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 101 LAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.-|..|...|....|+.+|.+++..+.... .+.+.+|..+...|+++.|+++|..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778999999999999998865432 5678899999999999999998865
No 78
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=67.80 E-value=79 Score=28.14 Aligned_cols=67 Identities=30% Similarity=0.357 Sum_probs=44.0
Q ss_pred ceeecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 002714 239 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 318 (889)
Q Consensus 239 ~~~vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~~~ 318 (889)
.....|+++.|.+.++|-=... ..++.+.+..... . .....
T Consensus 13 ~~~~~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~-------------------~------------------~~~~~ 53 (101)
T PF07705_consen 13 SNVVPGEPVTITVTVKNNGTAD--AENVTVRLYLDGN-------------------S------------------VSTVT 53 (101)
T ss_dssp SEEETTSEEEEEEEEEE-SSS---BEEEEEEEEETTE-------------------E------------------EEEEE
T ss_pred CcccCCCEEEEEEEEEECCCCC--CCCEEEEEEECCc-------------------e------------------eccEE
Confidence 4466899999999999964444 5565555433210 0 01235
Q ss_pred E-EEcCCceEEEEEEEEeCceeEEEEE
Q 002714 319 I-SLGGAETILVQLMVTPKVEGILKIV 344 (889)
Q Consensus 319 i-~L~p~Etk~v~L~v~P~~~G~L~I~ 344 (889)
| .|+|++++++.+.+.+..+|.+.|.
T Consensus 54 i~~L~~g~~~~v~~~~~~~~~G~~~i~ 80 (101)
T PF07705_consen 54 IPSLAPGESETVTFTWTPPSPGSYTIR 80 (101)
T ss_dssp ESEB-TTEEEEEEEEEE-SS-CEEEEE
T ss_pred ECCcCCCcEEEEEEEEEeCCCCeEEEE
Confidence 6 8999999999999999999988855
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=67.37 E-value=50 Score=36.49 Aligned_cols=30 Identities=7% Similarity=-0.157 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCccc
Q 002714 41 CGLWWVEMLKARHQYKDAATVYFRICGEEP 70 (889)
Q Consensus 41 ~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~ 70 (889)
.-+..+-++...|.+++|...+.++...++
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P 95 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRP 95 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 334444566777888888887777766554
No 80
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=67.36 E-value=17 Score=30.54 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=43.4
Q ss_pred HhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 104 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 104 ~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+.|.+.++...|+.|+.+++.+.-. .-.+.+..|..++.+|++..|++.|-.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHH
Confidence 5688899999999999999998544 224678899999999999999877644
No 81
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=66.67 E-value=17 Score=32.74 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=41.3
Q ss_pred EeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccCccCc
Q 002714 734 VNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSP 813 (889)
Q Consensus 734 vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 813 (889)
|.++|++.|.++..+.+.+.+... + |+++. +..|.-+
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~-------------------------~------D~~v~-d~~g~~v----------- 38 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQR-------------------------Y------DFVVK-DKEGKEV----------- 38 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS---------------------------E------EEEEE--TT--EE-----------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCE-------------------------E------EEEEE-CCCCCEE-----------
Confidence 679999999999999988875432 2 33333 1122222
Q ss_pred eEEec-----cccceEEeCCCceeEEEeEEEEec--ceeeec
Q 002714 814 FIWSG-----SSASSVRLQPMSTTDIAMKVCLFS--PGTYDL 848 (889)
Q Consensus 814 f~W~g-----~~~~~~~l~p~~~~~~~L~~~~~~--~GvYdl 848 (889)
|-|+. +.-....|+|||+....-.+--.. ||.|-|
T Consensus 39 wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 39 WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 33332 344577899999999998887777 898854
No 82
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=66.52 E-value=28 Score=34.97 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHH
Q 002714 41 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 120 (889)
Q Consensus 41 ~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~ 120 (889)
+.+..+..+...|.+++|...+-++....+ .++ ..+.-+...|..|.+.|+...|+.+|.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----------------~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEE-----------------DPN---DRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----------------ccc---hHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345556666777889988877766554221 000 011223445777788999999999999
Q ss_pred HHHhhhcCC
Q 002714 121 SAVSVYKGS 129 (889)
Q Consensus 121 ~A~~vY~~~ 129 (889)
+|+......
T Consensus 97 ~al~~~p~~ 105 (172)
T PRK02603 97 QALELNPKQ 105 (172)
T ss_pred HHHHhCccc
Confidence 999986543
No 83
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.05 E-value=23 Score=37.33 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=51.0
Q ss_pred cEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCCCcccCCC
Q 002714 410 DLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGE 489 (889)
Q Consensus 410 Ei~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~~~~L~pG 489 (889)
+.....++|+|....++.. +|+++.|..+++.. ..+.|.||
T Consensus 25 ~~~~~~l~l~N~t~~~vaF-KvktT~p~~y~VrP--------------------------------------~~G~i~p~ 65 (218)
T KOG0439|consen 25 EQVKCSLTLKNPTKLRVAF-KVKTTAPKLYCVRP--------------------------------------NGGVIDPG 65 (218)
T ss_pred ceEEEEEEEecCCCCceEE-EEEcCCCCeEEEcC--------------------------------------CcceECCC
Confidence 5889999999997776665 78888887776542 24668999
Q ss_pred CeEEEEEEEEec--CCcee--EEEEEEEEecCC
Q 002714 490 TPLLWPLWYRAA--VPGKI--SLSITIYYEMGD 518 (889)
Q Consensus 490 es~~~Plwlra~--~~G~~--~l~~LfyYe~~~ 518 (889)
++.++.++.++. .+... .-+|+|+|-...
T Consensus 66 ~t~~i~v~~q~~~~~P~d~~~r~kF~v~~~~~~ 98 (218)
T KOG0439|consen 66 STVEIEVTHQPFEKSPPDFKSRHKFLIQSLKAP 98 (218)
T ss_pred CcEEEEEEeccCccCchhhcccceEEEEEEecC
Confidence 999999988873 23333 346777775443
No 84
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=65.16 E-value=25 Score=31.94 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=48.6
Q ss_pred HHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 100 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 100 vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
...|..+.+.|+...|+..|..+.+.+.+.. ......+.+|+.+...|+++.|+..|..
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKST---YAPNAHYWLGEAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---ccHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 4567788899999999999999998775432 1246789999999999999999988865
No 85
>PF13584 BatD: Oxygen tolerance
Probab=64.29 E-value=1.2e+02 Score=36.07 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=49.1
Q ss_pred ceEEEEEEEEeCceeEEEEEEEEEEeccceeeEEEeecchhhhhcccccccccCCCCCceEEEEecCCceEEEEEecCCc
Q 002714 325 ETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPE 404 (889)
Q Consensus 325 Etk~v~L~v~P~~~G~L~I~Gv~~~L~~~v~g~~~F~i~g~rl~~tK~kr~~~~~pd~rL~~~V~~~~P~L~v~~~~lP~ 404 (889)
......+.+.|+++|.++|-.+.+++.|-.--...+.|. -.+....... + .........|++.++ +.
T Consensus 71 ~~~~~~~~l~p~~~G~~~IP~~~v~v~Gk~~~S~pi~i~-----V~~~~~~~~~-~-----~~~~~~~~~l~~~v~--~~ 137 (484)
T PF13584_consen 71 SSTTYTYTLQPKKTGTFTIPPFTVEVDGKTYKSQPITIE-----VSKASQSPSQ-P-----PSNADDDVFLEAEVS--KK 137 (484)
T ss_pred EEEEEEEEEEecccceEEEceEEEEECCEEEeecCEEEE-----EEecccCCcc-c-----cccccccEEEEEEeC--CC
Confidence 567888999999999999999999987621111112111 0000000000 0 000111223333343 56
Q ss_pred cccCccEEEEEEEEEecCcc
Q 002714 405 RAYAGDLRHLVLELKNQSDF 424 (889)
Q Consensus 405 ~ll~GEi~~~~l~L~N~G~~ 424 (889)
.+|.||-..++++|.=....
T Consensus 138 ~~Yvge~v~lt~~ly~~~~~ 157 (484)
T PF13584_consen 138 SVYVGEPVILTLRLYTRNNF 157 (484)
T ss_pred ceecCCcEEEEEEEEEecCc
Confidence 79999999999987655544
No 86
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=63.96 E-value=69 Score=29.30 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=53.0
Q ss_pred ccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCCCcccCC
Q 002714 409 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 488 (889)
Q Consensus 409 GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~~~~L~p 488 (889)
+...++.+.+.|.+..+++++.+...-|.++.+--. .+.+..|.|
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~-----------------------------------~~s~~~l~p 61 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQ-----------------------------------PPSSPTLPP 61 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEc-----------------------------------CCCCCccCC
Confidence 445689999999999999999998887765432211 112345788
Q ss_pred CCeEEEEEEEEecCCceeEEEEEEEEecC
Q 002714 489 ETPLLWPLWYRAAVPGKISLSITIYYEMG 517 (889)
Q Consensus 489 Ges~~~Plwlra~~~G~~~l~~LfyYe~~ 517 (889)
|+..+--+.+.++.++...+++=+-|.-.
T Consensus 62 ~~~i~q~~~i~~~~~~~~~~~~~vsy~~~ 90 (104)
T smart00809 62 GGQITQVLKVENPGKFPLRLRLRLSYLLG 90 (104)
T ss_pred CCCEEEEEEEECCCCCCEEEEEEEEEEEC
Confidence 88888889999887666666666666543
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=63.91 E-value=34 Score=35.74 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=54.0
Q ss_pred cchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 91 MLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 91 ~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.-...+--+.-.|..|.+.|+...|+..|.++...+....| .....+.+|..+...|+++.|+..+-.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~a~~~la~~~~~~~~~~~A~~~~~~ 95 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY---AEQAQLDLAYAYYKSGDYAEAIAAADR 95 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44444555566777888999999999999999998876644 334678999999999999999977654
No 88
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=63.03 E-value=94 Score=29.99 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHH
Q 002714 41 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 120 (889)
Q Consensus 41 ~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~ 120 (889)
+.+-.+..+...|..++|...+-+....+. ..+.+++ | +|--|..|...|+...|++-++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL-----------------~~~~~~~-a--~i~lastlr~LG~~deA~~~L~ 62 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGL-----------------SGADRRR-A--LIQLASTLRNLGRYDEALALLE 62 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------------CchHHHH-H--HHHHHHHHHHcCCHHHHHHHHH
Confidence 445667778888998888887766654321 1111111 1 1234566789999999999999
Q ss_pred HHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 121 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 121 ~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.+..-|.+.+|.. -+..-++--...+|..++|+..++.
T Consensus 63 ~~~~~~p~~~~~~---~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 63 EALEEFPDDELNA---ALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHCCCccccH---HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999888877733 3445556667889999999988875
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=62.69 E-value=93 Score=34.53 Aligned_cols=111 Identities=14% Similarity=0.036 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhCccc-hhhHHHHHHHHhhhhcc--------------CCCcchhhHHHHHHhhHhHHh
Q 002714 44 WWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLS--------------KPPMLHKYGFHLVLSGDRYKK 108 (889)
Q Consensus 44 l~~e~l~~~~~~~~Aa~~l~r~~~~~~-l~sAlllEqaA~c~l~~--------------~~~~~RK~Af~~vLAg~ry~k 108 (889)
+.+-++...|.+++|...+-++....| -..++.. ..++.++.. ..+..-.......+-|.-+..
T Consensus 48 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 48 VEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH
Confidence 344456677889999888887776554 1122221 111111110 001111122233355678899
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 109 CDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 109 ~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.|+...|.+.|++|+..-... .+.+..+|..+...|++++|+.++.+
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 999999999999999874333 36788999999999999999988765
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=62.44 E-value=37 Score=33.36 Aligned_cols=82 Identities=11% Similarity=0.045 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHH
Q 002714 21 ENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLV 100 (889)
Q Consensus 21 e~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~v 100 (889)
+.|+..|.......+. -.++....+.++-..|.+++|...+-++...++ ..+....
T Consensus 41 ~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-----------------------~~~~a~~ 96 (144)
T PRK15359 41 SRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-----------------------SHPEPVY 96 (144)
T ss_pred HHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------------CCcHHHH
Confidence 4455445444332111 123334555566667777777777766665444 1233344
Q ss_pred HhhHhHHhCCCcHHHHHHHHHHHhhh
Q 002714 101 LSGDRYKKCDQINHAIRTYRSAVSVY 126 (889)
Q Consensus 101 LAg~ry~k~g~~~~A~rcy~~A~~vY 126 (889)
--|..|.+.|+...|+.+|..|+.+-
T Consensus 97 ~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 97 QTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45566678899999999999999863
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=62.34 E-value=16 Score=44.72 Aligned_cols=80 Identities=16% Similarity=0.314 Sum_probs=46.6
Q ss_pred hHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCC---Cccccch--hhhhhHHHHHH
Q 002714 73 SAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGS---TWSHIKD--HVHFHIGQWYA 147 (889)
Q Consensus 73 sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~---~W~~~~d--hi~~~lgr~~~ 147 (889)
.-=++||.|...+. +-. +=-||+-|+|...+..|+.||+..-..-+.. +...-++ .+.-.-|.-..
T Consensus 647 de~il~~ia~alik--~el-------ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~ 717 (1636)
T KOG3616|consen 647 DEEILEHIAAALIK--GEL-------YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLE 717 (1636)
T ss_pred cHHHHHHHHHHHHh--hHH-------HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHH
Confidence 34456676665542 111 2237888888888999999987644332211 0000011 12333444457
Q ss_pred HhCCHHHHHHHHHH
Q 002714 148 VLGMHDIAVAHMLE 161 (889)
Q Consensus 148 ~l~~~~~Av~h~l~ 161 (889)
..||++.||.||.+
T Consensus 718 ~~~q~daainhfie 731 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIE 731 (1636)
T ss_pred HHHhHHHHHHHHHH
Confidence 78999999999977
No 92
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=61.90 E-value=18 Score=29.76 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=32.7
Q ss_pred CccccCccEEEEEEEEEecCccccceEEEEecCCceEEec
Q 002714 403 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIG 442 (889)
Q Consensus 403 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g 442 (889)
+..+.-|+....+|+++|.|..++.++.+.=.-|.-+.|-
T Consensus 5 ~~~~~~Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~v 44 (53)
T TIGR01451 5 KTVATIGDTITYTITVTNNGNVPATNVVVTDILPSGTTFV 44 (53)
T ss_pred ccccCCCCEEEEEEEEEECCCCceEeEEEEEcCCCCCEEE
Confidence 3456789999999999999999999998887766555443
No 93
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=61.66 E-value=30 Score=34.49 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=49.7
Q ss_pred chhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 92 LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 92 ~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
-+++-.|+.+ |..+...|+...|+.+|++|+.+..+.. ....+++.+|..+...|+++.|++.+..
T Consensus 32 ~~~a~~~~~~-g~~~~~~g~~~~A~~~~~~al~l~~~~~---~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 32 EKEAFTYYRD-GMSAQSEGEYAEALQNYYEAMRLEIDPY---DRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred hHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444 6678888999999999999998854321 1124789999999999999999988755
No 94
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=61.03 E-value=52 Score=29.62 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=38.1
Q ss_pred EEEEEEEeCcccccEEee-------eEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002714 247 VKVDIEFKNPLQIPISIS-------NISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 319 (889)
Q Consensus 247 i~V~V~L~NPL~ipL~ls-------~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~~~i 319 (889)
+.+.++++|+=.-++.|+ |+.|. +.++ +. +=+| +++..|+....+.
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~----d~~g--------------~~--------vwrw-S~~~~FtQal~~~ 54 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVK----DKEG--------------KE--------VWRW-SDGKMFTQALQEE 54 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-----TT----------------E--------EEET-TTT-------EEE
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEE----CCCC--------------CE--------EEEe-cCCchhhheeeEE
Confidence 678899999999888886 22222 1111 00 0122 2445677777899
Q ss_pred EEcCCceEEEEEEEEeCc--eeEEEEE
Q 002714 320 SLGGAETILVQLMVTPKV--EGILKIV 344 (889)
Q Consensus 320 ~L~p~Etk~v~L~v~P~~--~G~L~I~ 344 (889)
+|.|+|+++....+-... +|..++.
T Consensus 55 ~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 55 TLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EECCCCEEEEEEEECCCCCCCceEEEe
Confidence 999999999999888777 7887764
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=60.94 E-value=1.4e+02 Score=38.07 Aligned_cols=60 Identities=10% Similarity=0.000 Sum_probs=44.3
Q ss_pred HhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 101 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 101 LAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+-|.-+...|+...|..++.+|+.++...+. ...-.....+|+.....|+++.|.+++.+
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3355555669999999999999999875431 11224456688999999999999877654
No 96
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=59.69 E-value=10 Score=27.17 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.1
Q ss_pred HhhHhHHhCCCcHHHHHHHHHHHhhh
Q 002714 101 LSGDRYKKCDQINHAIRTYRSAVSVY 126 (889)
Q Consensus 101 LAg~ry~k~g~~~~A~rcy~~A~~vY 126 (889)
.=|.-|...|+...|+.||++|+++.
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 44788999999999999999999874
No 97
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking
Probab=59.49 E-value=20 Score=30.07 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=38.2
Q ss_pred cCceEEeccccceEEeCCCceeEEEeEEEEecceeeecCCcE
Q 002714 811 VSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYA 852 (889)
Q Consensus 811 ~~~f~W~g~~~~~~~l~p~~~~~~~L~~~~~~~GvYdl~~~~ 852 (889)
+..|+-+|-.+.+.++-|++..+++-+-.=+.+|-|-|=..+
T Consensus 15 n~~F~v~G~~~~~~~~~~~~~~~i~~~Fipl~aG~~~LP~I~ 56 (57)
T PF12742_consen 15 NDNFIVCGPKKMNFHMWPGQKFEIPYNFIPLTAGFLKLPKIN 56 (57)
T ss_pred CCceEEEccceeEEEEccCceEEEEEEEEEeehheecCcccc
Confidence 678999999999999999999999999999999999885543
No 98
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=59.21 E-value=33 Score=43.06 Aligned_cols=88 Identities=22% Similarity=0.349 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHH
Q 002714 43 LWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSA 122 (889)
Q Consensus 43 ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A 122 (889)
+-.++.|...|.|++|-..|..+++.+....|.+.=..|.|| ...|...+|+-||..+
T Consensus 418 ~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~----------------------~~l~e~e~A~e~y~kv 475 (895)
T KOG2076|consen 418 LDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY----------------------MELGEYEEAIEFYEKV 475 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH----------------------HHHhhHHHHHHHHHHH
Confidence 445666777777777777777777765433344555555555 5567789999999999
Q ss_pred HhhhcCCCccccchh--hhhhHHHHHHHhCCHHHHHHHHH
Q 002714 123 VSVYKGSTWSHIKDH--VHFHIGQWYAVLGMHDIAVAHML 160 (889)
Q Consensus 123 ~~vY~~~~W~~~~dh--i~~~lgr~~~~l~~~~~Av~h~l 160 (889)
+.+ .-|| .-++|+..+..+|+.+.|+.-+-
T Consensus 476 l~~--------~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 476 LIL--------APDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred Hhc--------CCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 975 2444 56899999999999999987663
No 99
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=59.19 E-value=95 Score=39.23 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=35.7
Q ss_pred HHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 100 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 100 vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.+.|..+...|+...|+.+|+++....-+.. .+.+.+|..+...|+++.|++.+.+
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~------~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQ------GLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3455566666777777777777766643332 3666777777777777777666643
No 100
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=58.93 E-value=45 Score=33.14 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=29.7
Q ss_pred eEEEcCCceEEEEEEEEeCceeEEEEEEEEEEec
Q 002714 318 DISLGGAETILVQLMVTPKVEGILKIVGVRWRLS 351 (889)
Q Consensus 318 ~i~L~p~Etk~v~L~v~P~~~G~L~I~Gv~~~L~ 351 (889)
.|.+..++...+.|.+.|.++|.|..-.|..+-.
T Consensus 80 ~f~~~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~ 113 (147)
T PF12584_consen 80 VFSLSDGSEHEIPLTLIPLRAGYLPLPKVEIRPY 113 (147)
T ss_pred eEEecCCCeEEEEEEEEecccceecCCEEEEEec
Confidence 5777889999999999999999999888877654
No 101
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.45 E-value=98 Score=37.86 Aligned_cols=16 Identities=38% Similarity=0.227 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhC
Q 002714 16 AEYCMENAFTTYAKIG 31 (889)
Q Consensus 16 ~~~~le~A~~~Y~~~~ 31 (889)
.+..+++|..+|+++-
T Consensus 196 a~Grl~ea~~cYlkAi 211 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAI 211 (966)
T ss_pred hhcccchhHHHHHHHH
Confidence 3456777777887663
No 102
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=57.79 E-value=12 Score=27.87 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=21.7
Q ss_pred hhHhHHhCCCcHHHHHHHHHHHhhhc
Q 002714 102 SGDRYKKCDQINHAIRTYRSAVSVYK 127 (889)
Q Consensus 102 Ag~ry~k~g~~~~A~rcy~~A~~vY~ 127 (889)
=|+-|.+.|....|+.||++|+.+-.
T Consensus 5 Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 5 LGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 47889999999999999999886643
No 103
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.85 E-value=47 Score=37.00 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhC----CCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcch
Q 002714 18 YCMENAFTTYAKIG----SSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLH 93 (889)
Q Consensus 18 ~~le~A~~~Y~~~~----~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~R 93 (889)
.-++.|+..|..+- .++-+|.-|++. +...|.|++|..-.-+...-|+ ..=
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAA-----y~~Lg~~~~AVkDce~Al~iDp--------------------~ys 149 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAA-----YSKLGEYEDAVKDCESALSIDP--------------------HYS 149 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHH-----HHHhcchHHHHHHHHHHHhcCh--------------------HHH
Confidence 34677888887653 233477777765 4566888888776666655554 111
Q ss_pred hhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchh
Q 002714 94 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDH 137 (889)
Q Consensus 94 K~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dh 137 (889)
|+ +.-=|-.|...|++.+|++.|+.|+.++ ..|.-.+.|
T Consensus 150 ka---y~RLG~A~~~~gk~~~A~~aykKaLeld--P~Ne~~K~n 188 (304)
T KOG0553|consen 150 KA---YGRLGLAYLALGKYEEAIEAYKKALELD--PDNESYKSN 188 (304)
T ss_pred HH---HHHHHHHHHccCcHHHHHHHHHhhhccC--CCcHHHHHH
Confidence 11 1123667889999999999999999997 455433333
No 104
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=56.19 E-value=1.5e+02 Score=33.22 Aligned_cols=127 Identities=16% Similarity=0.171 Sum_probs=69.7
Q ss_pred cEEEEEecCceeeccCCCCceeEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCC-cc--ccccc
Q 002714 712 PITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAG-WH--DVPVL 788 (889)
Q Consensus 712 ~i~~~l~~p~~i~h~F~~~~c~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~--~~~~~ 788 (889)
-|+.+..+|..|. -....-.++.+.|.|+.+.++.+-...+......-+ ....+.....++.++ +. ++..+
T Consensus 157 gv~~sF~gp~~V~-----~Ge~F~w~v~ivN~S~~~r~L~l~~~~~r~~~~~~~-~~~~~~~~~s~~~~~~~~~~~v~~e 230 (306)
T PF12735_consen 157 GVTFSFSGPSSVK-----VGEPFSWKVFIVNRSSSPRKLALYVPPRRRRNDERS-NSPPPNPSSSSNLNNKQIADAVTDE 230 (306)
T ss_pred CeEEEEeCCceEe-----cCCeEEEEEEEEECCCCCeeEEEEecCccccccccc-cCCCCCcccccccccccccccceeh
Confidence 5666666664443 345667899999999988888877766332221110 000111111111100 11 01111
Q ss_pred ccceecccCCccccccCCccCc-cCceEEeccccceE-EeCCCceeEEEeEEEEecceeeecCCcEEE
Q 002714 789 TDIKVTSQLPLNQVKRSSLLES-VSPFIWSGSSASSV-RLQPMSTTDIAMKVCLFSPGTYDLSNYALN 854 (889)
Q Consensus 789 ~~~~~~~~~~~~~~~~p~~~~~-~~~f~W~g~~~~~~-~l~p~~~~~~~L~~~~~~~GvYdl~~~~l~ 854 (889)
| ..|...-.+.-. ..-.++.. ...++ -|.|+++.++.|+-.-+++|+|+|.+-||.
T Consensus 231 n---------~~~~~~~~~~~~~~~gli~Ls-nDiriGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvv 288 (306)
T PF12735_consen 231 N---------IVQAMQKYSSVEESTGLICLS-NDIRIGPLAPGACYSVELRFIALSPGVHNLEGLKVV 288 (306)
T ss_pred h---------HHHHhhhhcccccCCceEEec-ccccccccCCCceEEEEEEEEEeccceEeecceEEE
Confidence 1 122221111000 22366663 35666 499999999999999999999999987663
No 105
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=55.82 E-value=25 Score=41.38 Aligned_cols=63 Identities=10% Similarity=0.015 Sum_probs=50.0
Q ss_pred hhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccch-hhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 94 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKD-HVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 94 K~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~d-hi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
-+.-|.-| |..|.+.|+...|+.||++|+.+--+. .+- +.++.+|-.+..+|++++|+.+|.+
T Consensus 74 ~a~a~~NL-G~AL~~lGryeEAIa~f~rALeL~Pd~----aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 74 TAEDAVNL-GLSLFSKGRVKDALAQFETALELNPNP----DEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444 778899999999999999999985443 111 3589999999999999999999876
No 106
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=55.79 E-value=18 Score=42.95 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=60.5
Q ss_pred chhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 92 LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 92 ~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+-+.++|++.+|.-+...|+...|+.+|..|.. ....|..+..=..|.+|-.+..+.++++|..+|.+
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~--~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIE--SQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--chhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 447899999999999999999999999999983 35779998877789999999999999999988866
No 107
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.03 E-value=1e+02 Score=37.68 Aligned_cols=133 Identities=20% Similarity=0.239 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-hhhH-------HH----HHHHHhhhhc
Q 002714 19 CMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSA-------VM----LEQASYCYLL 86 (889)
Q Consensus 19 ~le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~-l~sA-------ll----lEqaA~c~l~ 86 (889)
.+|.|+..|+++-...+.+|.--. ..+-++..+|..|-|..-+-|..+..| +..| |= ..+|-.||-.
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~g-Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHG-NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhcc-ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 579999999988654445554322 223356778888888888888776553 3222 21 2345555543
Q ss_pred cC--CCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 87 SK--PPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 87 ~~--~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.- -| -+|=-|-=-|+.|...|+...|.|.|+.|+.+|-+- . . -+-.||-.+...|++++||.|+-+
T Consensus 346 aL~l~p---~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~--a--a--a~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 346 ALRLCP---NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF--A--A--AHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHhCC---ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh--h--h--hhhhHHHHHHhcccHHHHHHHHHH
Confidence 20 01 123334445788888888888888888888887432 1 1 234566667777888888877643
No 108
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.58 E-value=45 Score=39.63 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=81.3
Q ss_pred ccEEEEeccccc-CCCCCCCCCccccceeeecccccCCCcEEEEEecCceeeccCCCCceeEeEEEEEEeCCCccEEEEE
Q 002714 674 VDFIFISQPSKS-DSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRV 752 (889)
Q Consensus 674 ~~ii~~w~a~~~-~~~~~~~~~~~~g~~h~~~~~~~~~~~i~~~l~~p~~i~h~F~~~~c~vpv~l~l~N~s~~~v~v~i 752 (889)
=..|+-||-... |+- ...+ .. --++|. .+..+||..+-+-|. |..--=.+||+..++|.++...||.|
T Consensus 660 GhyiisWkRtsameNi-piit-tV---itLphv-iVe~iPlhvnadlps-----fgrVReslpvkyhLqnktdlvqdvei 728 (809)
T KOG4386|consen 660 GHYIISWKRTSAMENI-PIIT-TV---ITLPHV-IVEAIPLHVNADLPS-----FGRVRESLPVKYHLQNKTDLVQDVEI 728 (809)
T ss_pred ceEEEEEeecccccCC-Ccee-ee---cccccc-eeeeccceeecCCCC-----cceecccccEEEEeccccceeeeEEe
Confidence 457888987554 333 1111 01 112332 345568888776665 44422347999999999999988888
Q ss_pred EecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccCccCceEEeccccceEEeCCCcee
Q 002714 753 NTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTT 832 (889)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~W~g~~~~~~~l~p~~~~ 832 (889)
+.-. +-.||++|.-+.++.+-||.+.
T Consensus 729 svep------------------------------------------------------sDaFMFSGlkqirlriLPGteq 754 (809)
T KOG4386|consen 729 SVEP------------------------------------------------------SDAFMFSGLKQIRLRILPGTEQ 754 (809)
T ss_pred eccc------------------------------------------------------chhheecccceEEEEEcCCCce
Confidence 7532 2239999999999999999999
Q ss_pred EEEeEEEEecceeeecCCcEEEEEE
Q 002714 833 DIAMKVCLFSPGTYDLSNYALNWKL 857 (889)
Q Consensus 833 ~~~L~~~~~~~GvYdl~~~~l~~~~ 857 (889)
++....--+.+|--+| +.||+++
T Consensus 755 emlynfypLmAGyqql--Pslninl 777 (809)
T KOG4386|consen 755 EMLYNFYPLMAGYQQL--PSLNINL 777 (809)
T ss_pred EEEEEEehhhchhhhC--CcccccC
Confidence 9999988899998777 4555555
No 109
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=51.96 E-value=22 Score=25.18 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 138 VHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 138 i~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+++.+|..++.+|+++.|+++|.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 568999999999999999999865
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=51.33 E-value=2.5e+02 Score=35.80 Aligned_cols=63 Identities=13% Similarity=-0.053 Sum_probs=51.8
Q ss_pred HHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 99 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 99 ~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
....|..+...|+...|...|.+|+......+...-.-..+..+|..+...|+.+.|..+|.+
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356778899999999999999999999877665443335677889999999999999988866
No 111
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=51.15 E-value=45 Score=29.64 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=23.4
Q ss_pred cEEEEEEEEEecCccccceEEEEecC
Q 002714 410 DLRHLVLELKNQSDFSVKNLKMKVSH 435 (889)
Q Consensus 410 Ei~~~~l~L~N~G~~pl~~l~v~~s~ 435 (889)
...+..+.|+|.|..|++++.+.++.
T Consensus 17 ~y~qy~v~I~N~~~~~I~~~~i~~~~ 42 (80)
T PF09478_consen 17 TYTQYDVTITNNGSKPIKSLKISIDN 42 (80)
T ss_pred EEEEEEEEEEECCCCeEEEEEEEECc
Confidence 46789999999999999999999883
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.98 E-value=46 Score=40.02 Aligned_cols=75 Identities=27% Similarity=0.416 Sum_probs=53.7
Q ss_pred HHHHHhhhhcc---CCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHH
Q 002714 77 LEQASYCYLLS---KPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHD 153 (889)
Q Consensus 77 lEqaA~c~l~~---~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~ 153 (889)
.++|.-||-.+ +|- -|-+|==|- -......+-.-|+-.|.+|++++-+= -..-|-||--|..+|.++
T Consensus 446 fdraiDcf~~AL~v~Pn---d~~lWNRLG-AtLAN~~~s~EAIsAY~rALqLqP~y------VR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN---DYLLWNRLG-ATLANGNRSEEAISAYNRALQLQPGY------VRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HHHHHHHHHHHHhcCCc---hHHHHHHhh-HHhcCCcccHHHHHHHHHHHhcCCCe------eeeehhhhhhhhhhhhHH
Confidence 47888888553 332 344454332 23345567889999999999997651 123488999999999999
Q ss_pred HHHHHHHH
Q 002714 154 IAVAHMLE 161 (889)
Q Consensus 154 ~Av~h~l~ 161 (889)
+|++|||+
T Consensus 516 EA~~hlL~ 523 (579)
T KOG1125|consen 516 EAVKHLLE 523 (579)
T ss_pred HHHHHHHH
Confidence 99999988
No 113
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=49.89 E-value=46 Score=31.35 Aligned_cols=60 Identities=5% Similarity=-0.026 Sum_probs=49.3
Q ss_pred HHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 96 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 96 Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+..++.-|..|.+.|+...|+++|..+...... .....+.+|..+..+|+++.|+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888899999999999999999887432 235778999999999999999987754
No 114
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.33 E-value=27 Score=37.77 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=46.4
Q ss_pred CCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 110 DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 110 g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.+-.+.+.++..|+..|+..+-.....+|.+.||+.++.+|+++.|++.|..
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~ 203 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEP 203 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445668999999999999998889999999999999999999999998854
No 115
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=49.16 E-value=56 Score=41.56 Aligned_cols=130 Identities=16% Similarity=0.221 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCCchhhhHHHHHHHHHH-HHhcC--CHHHHHHHHHHHhCccchhhHHHHHHHHhhhhcc-CCCcchhh
Q 002714 20 MENAFTTYAKIGSSGQQNATRCGLWWVEM-LKARH--QYKDAATVYFRICGEEPLHSAVMLEQASYCYLLS-KPPMLHKY 95 (889)
Q Consensus 20 le~A~~~Y~~~~~~~~~~AlR~~ll~~e~-l~~~~--~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~-~~~~~RK~ 95 (889)
++.|..++...--..|+. +++.+..+++ +-.+. .++.|-..+-|+-.+++ -.++++-..|.-|.++ .-++.=+.
T Consensus 215 ~~~a~~a~~ralqLdp~~-v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDPTC-VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHL 292 (1018)
T ss_pred hhhHHHHHHHHHhcChhh-HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHH
Confidence 345555554443322333 3333333333 32222 26666666666665554 2233333444433332 22333333
Q ss_pred HHHHH-------Hh-------hHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchh-h--hhhHHHHHHHhCCHHHHHHH
Q 002714 96 GFHLV-------LS-------GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDH-V--HFHIGQWYAVLGMHDIAVAH 158 (889)
Q Consensus 96 Af~~v-------LA-------g~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dh-i--~~~lgr~~~~l~~~~~Av~h 158 (889)
|-|++ += |..|.+.|+...|..-|.+|.+. ..|| + ++.||+++...|+++.|+.-
T Consensus 293 a~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--------~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 293 AEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--------DNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--------CCCCccccccchhHHHHHhchHHHHHHH
Confidence 33322 22 33344444444444444444432 1222 2 56777777777777777654
Q ss_pred H
Q 002714 159 M 159 (889)
Q Consensus 159 ~ 159 (889)
|
T Consensus 365 f 365 (1018)
T KOG2002|consen 365 F 365 (1018)
T ss_pred H
Confidence 4
No 116
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=49.15 E-value=48 Score=32.04 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=47.4
Q ss_pred eEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccCccC
Q 002714 733 EVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVS 812 (889)
Q Consensus 733 ~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 812 (889)
...+++.|.|.++..+.|.+......++. .|=.|-+..+. +. -.++. .+
T Consensus 28 ~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~------------------nG~I~Y~~~~~-~~-----------d~sl~-~~ 76 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEITVKVSANTATTND------------------NGVIDYSQNNP-KK-----------DKSLK-YP 76 (121)
T ss_pred EEEEEEEEEeCCCCCEEEEEEEeeeEecC------------------CEEEEECCCCc-cc-----------CcccC-cc
Confidence 56789999999999988888877754331 12221111110 00 00000 11
Q ss_pred ceEEeccccceEEeCCCceeEEEeEEEEec
Q 002714 813 PFIWSGSSASSVRLQPMSTTDIAMKVCLFS 842 (889)
Q Consensus 813 ~f~W~g~~~~~~~l~p~~~~~~~L~~~~~~ 842 (889)
-=-|...... ++|+|+|+..|++++-...
T Consensus 77 ~~~~v~~~~~-Vtl~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 77 FSDLVKIPKE-VTLPPNESKTVTFTIKMPK 105 (121)
T ss_pred hHHhccCCcE-EEECCCCEEEEEEEEEcCC
Confidence 1235555555 9999999999999987765
No 117
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=48.14 E-value=64 Score=34.90 Aligned_cols=109 Identities=13% Similarity=0.056 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc----hhhHHHHHHHHhhhhccCCC--------c-----chhhHHHHH
Q 002714 38 ATRCGLWWVEMLKARHQYKDAATVYFRICGEEP----LHSAVMLEQASYCYLLSKPP--------M-----LHKYGFHLV 100 (889)
Q Consensus 38 AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~----l~sAlllEqaA~c~l~~~~~--------~-----~RK~Af~~v 100 (889)
..+..+..++++...|..++|-..+-++...+| +..+++ ..++..+.. . ..-..+|..
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~-----~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA-----WLLIDMGDYDEAREALKRLLKAAPDDPDLWDA 219 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH-----HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH-----HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHH
Confidence 345556777888889999999988888776443 333332 222211110 0 111246666
Q ss_pred HhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHH
Q 002714 101 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAH 158 (889)
Q Consensus 101 LAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h 158 (889)
+ |..|...|+...|+.+|++++....+. | -+...+|......|+.+.|++.
T Consensus 220 l-a~~~~~lg~~~~Al~~~~~~~~~~p~d-~-----~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 220 L-AAAYLQLGRYEEALEYLEKALKLNPDD-P-----LWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp H-HHHHHHHT-HHHHHHHHHHHHHHSTT--H-----HHHHHHHHHHT-----------
T ss_pred H-HHHhccccccccccccccccccccccc-c-----cccccccccccccccccccccc
Confidence 6 677889999999999999999754321 1 3557788888899999998753
No 118
>PRK13202 ureB urease subunit beta; Reviewed
Probab=47.18 E-value=46 Score=31.35 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=43.6
Q ss_pred cCCccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeec
Q 002714 401 PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF 480 (889)
Q Consensus 401 ~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~ 480 (889)
.-+..+..|....++|+++|.|..|+. +-||-.|+-.... +.|-...++.. =+++
T Consensus 10 ~~~I~ln~grr~~~~l~V~NtGDRPIQ----VGSHyHF~E~N~a----L~FDR~~A~G~-----------------RLdI 64 (104)
T PRK13202 10 SGDIEMNAAALSRLQMRIINAGDRPVQ----VGSHVHLPQANRA----LSFDRATAHGY-----------------RLDI 64 (104)
T ss_pred CCCEEeCCCCCceEEEEEEeCCCCceE----EccccchhhcCcc----eeecHhHhcCc-----------------cccc
Confidence 345667778667899999999999874 3467666632211 12211111111 1123
Q ss_pred CC--CcccCCCCeEEEEEEE
Q 002714 481 PE--GISIQGETPLLWPLWY 498 (889)
Q Consensus 481 p~--~~~L~pGes~~~Plwl 498 (889)
|. ....+||+++++.|-=
T Consensus 65 paGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 65 PAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CCCCeEEECCCCeEEEEEEE
Confidence 42 3567899999998863
No 119
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=47.09 E-value=30 Score=24.58 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=22.7
Q ss_pred HHHhhHhHHhCCCcHHHHHHHHHHHhhhc
Q 002714 99 LVLSGDRYKKCDQINHAIRTYRSAVSVYK 127 (889)
Q Consensus 99 ~vLAg~ry~k~g~~~~A~rcy~~A~~vY~ 127 (889)
+.+-|.-|.+.|+...|+.+|++|+++-.
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34567788888889999999988887643
No 120
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=46.70 E-value=1e+02 Score=33.84 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHH
Q 002714 37 NATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAI 116 (889)
Q Consensus 37 ~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~ 116 (889)
++--+-++.++++-..|.+++|...+-++.... |...|+.--+...|..|.+.|+...|.
T Consensus 178 ~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--------------------P~s~~~~dAl~klg~~~~~~g~~~~A~ 237 (263)
T PRK10803 178 YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--------------------PKSPKAADAMFKVGVIMQDKGDTAKAK 237 (263)
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------CCCcchhHHHHHHHHHHHHcCCHHHHH
Confidence 444556777888888888888877666655422 222233333334466677889999999
Q ss_pred HHHHHHHhhhcCC
Q 002714 117 RTYRSAVSVYKGS 129 (889)
Q Consensus 117 rcy~~A~~vY~~~ 129 (889)
..|.++...|-+.
T Consensus 238 ~~~~~vi~~yP~s 250 (263)
T PRK10803 238 AVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHCcCC
Confidence 9999999999765
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=46.39 E-value=1.1e+02 Score=29.80 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=49.4
Q ss_pred CCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHH
Q 002714 88 KPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 159 (889)
Q Consensus 88 ~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~ 159 (889)
..|...-..+-.+..|..+...|+...|..-|+.+..-.....+ ..-..+.|++.....|+++.|+..+
T Consensus 40 ~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l---~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 40 DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL---KPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH---HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444445555666677777889999999999998876533332 3346778888888999999998887
No 122
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=46.35 E-value=4.9e+02 Score=34.90 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=29.6
Q ss_pred cCccCceEEeccccceEE-eCCCceeEEEeEEEE
Q 002714 808 LESVSPFIWSGSSASSVR-LQPMSTTDIAMKVCL 840 (889)
Q Consensus 808 ~~~~~~f~W~g~~~~~~~-l~p~~~~~~~L~~~~ 840 (889)
+.....+.|.|..+..+. |+|++++++.+.++|
T Consensus 1152 ~~~~~ril~~G~Lq~~l~~l~p~~~~~~~~~lif 1185 (1185)
T PF08626_consen 1152 LDLDRRILWNGSLQQPLPELEPGESTEHELSLIF 1185 (1185)
T ss_pred cCcCCeEEEEccCcccccccCCCceEEEEEEEEC
Confidence 456888999999999977 999999999999987
No 123
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=46.02 E-value=32 Score=24.43 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 137 HVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 137 hi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
++++.+|+.+..+|+++.|+++|.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678999999999999999998854
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=44.38 E-value=83 Score=35.92 Aligned_cols=85 Identities=12% Similarity=0.048 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHH
Q 002714 20 MENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHL 99 (889)
Q Consensus 20 le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~ 99 (889)
++.|+..|.+.-...+.. ..+.+..+.++-..|.+++|...+-++...++ . .+..+
T Consensus 18 ~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--------------------~---~~~a~ 73 (356)
T PLN03088 18 FALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDP--------------------S---LAKAY 73 (356)
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------------C---CHHHH
Confidence 455665555443211111 12234445556667889988887766655443 1 11112
Q ss_pred HHhhHhHHhCCCcHHHHHHHHHHHhhhcC
Q 002714 100 VLSGDRYKKCDQINHAIRTYRSAVSVYKG 128 (889)
Q Consensus 100 vLAg~ry~k~g~~~~A~rcy~~A~~vY~~ 128 (889)
..-|..|...|+...|+++|++|+.+.-+
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 23366778899999999999999987543
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=43.89 E-value=2.2e+02 Score=31.20 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=49.9
Q ss_pred HHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 96 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 96 Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
-+|+.+ |-.|.+.|....|.+-|++|+++.-+. .-+.-.||-.+.--|+++.|.+.|+.
T Consensus 135 ~~~~~l-gaaldq~Gr~~~Ar~ay~qAl~L~~~~------p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 135 EAWNLL-GAALDQLGRFDEARRAYRQALELAPNE------PSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred hhhhHH-HHHHHHccChhHHHHHHHHHHHhccCC------chhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 466666 457899999999999999999997654 35677888889999999999999887
No 126
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=43.59 E-value=2.6e+02 Score=32.39 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=48.7
Q ss_pred hhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCC----ccc-----c--------------------ch---hhhhh
Q 002714 94 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGST----WSH-----I--------------------KD---HVHFH 141 (889)
Q Consensus 94 K~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~----W~~-----~--------------------~d---hi~~~ 141 (889)
...+++.+|. .+.++|+...|+.-++.++..+-... +.+ + .| .+..+
T Consensus 262 ~~~l~~~~a~-~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 262 NIALKIALAE-HLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CHHHHHHHHH-HHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 4455555554 99999999999999999998544322 100 0 11 46779
Q ss_pred HHHHHHHhCCHHHHHHHHH
Q 002714 142 IGQWYAVLGMHDIAVAHML 160 (889)
Q Consensus 142 lgr~~~~l~~~~~Av~h~l 160 (889)
+|+.++..|+++.|.++|-
T Consensus 341 Lg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHcccHHHHHHHHH
Confidence 9999999999999999886
No 127
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=43.38 E-value=81 Score=36.08 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=48.5
Q ss_pred CccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCCCcccC
Q 002714 408 AGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQ 487 (889)
Q Consensus 408 ~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~~~~L~ 487 (889)
-|-.-+++++++|.|..|+.-=...+..-+|+-..+-...+..+|..+.-. .+ .+..+..|+
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~-----------------GL-~v~d~~pI~ 341 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAE-----------------GL-EVDDQSAIA 341 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhc-----------------cc-eeCCCCCcC
Confidence 466778999999999999876666666665653211122333445432210 01 123356799
Q ss_pred CCCeEEEEEEEEec
Q 002714 488 GETPLLWPLWYRAA 501 (889)
Q Consensus 488 pGes~~~Plwlra~ 501 (889)
|||++++.+-.+..
T Consensus 342 PGETr~v~v~aqdA 355 (399)
T TIGR03079 342 PGETVEVKMEAKDA 355 (399)
T ss_pred CCcceEEEEEEehh
Confidence 99999999988854
No 128
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=43.08 E-value=91 Score=25.76 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCC-CcHHHHHHHHH
Q 002714 43 LWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCD-QINHAIRTYRS 121 (889)
Q Consensus 43 ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g-~~~~A~rcy~~ 121 (889)
...+.++...|.|++|...+-++...++ ..+.++-..|.|| .+.| +...|+.+|.+
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~----------------------~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAY----------------------MKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHH----------------------HHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH----------------------HHhCccHHHHHHHHHH
Confidence 4455666678889999998888887665 2233444444444 4455 58899999999
Q ss_pred HHhh
Q 002714 122 AVSV 125 (889)
Q Consensus 122 A~~v 125 (889)
|+.+
T Consensus 64 al~l 67 (69)
T PF13414_consen 64 ALKL 67 (69)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9875
No 129
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=42.57 E-value=43 Score=24.56 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=23.2
Q ss_pred HHHhhHhHHhCCCcHHHHHHHHHHHhhhcCC
Q 002714 99 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGS 129 (889)
Q Consensus 99 ~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~ 129 (889)
+---|..|...|+...|+.+|.+|+.+++..
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 3445778889999999999999999998764
No 130
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=42.25 E-value=57 Score=30.02 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=23.7
Q ss_pred CCeEEEEEEEeCcccccEEeeeEEEEEEE
Q 002714 244 GEPVKVDIEFKNPLQIPISISNISLICEL 272 (889)
Q Consensus 244 gE~i~V~V~L~NPL~ipL~ls~I~L~~~~ 272 (889)
+-.+.+.+.+.||-.+|+.+.++.-....
T Consensus 14 ~~~~~l~l~v~NPN~~~l~~~~~~y~l~~ 42 (100)
T smart00769 14 EIEIVLKVKVQNPNPFPIPVNGLSYDLYL 42 (100)
T ss_pred EEEEEEEEEEECCCCCccccccEEEEEEE
Confidence 34678899999999999999999854444
No 131
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=42.11 E-value=87 Score=37.64 Aligned_cols=70 Identities=21% Similarity=0.228 Sum_probs=48.5
Q ss_pred eeecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee-ee
Q 002714 240 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE-VD 318 (889)
Q Consensus 240 ~~vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~-~~ 318 (889)
...+|+++++.++++||=.-.++++ +.. .++++++.+. .+ ..
T Consensus 480 ~~~~~~~~~l~~~I~N~T~~~~~~~---~~m--e~s~~F~fsG--------------------------------~k~~~ 522 (554)
T PF07919_consen 480 SAIVGEPFTLSYTIENPTNHFQTFE---LSM--EPSDDFMFSG--------------------------------PKQTT 522 (554)
T ss_pred ccccCcEEEEEEEEECCCCccEEEE---EEE--ccCCCEEEEC--------------------------------CCcCc
Confidence 4557999999999999877666553 222 2222222111 11 36
Q ss_pred EEEcCCceEEEEEEEEeCceeEEEEEEE
Q 002714 319 ISLGGAETILVQLMVTPKVEGILKIVGV 346 (889)
Q Consensus 319 i~L~p~Etk~v~L~v~P~~~G~L~I~Gv 346 (889)
+.|.|.++++++..+.|...|.++.-.+
T Consensus 523 ~~llP~s~~~~~y~l~pl~~G~~~lP~l 550 (554)
T PF07919_consen 523 FSLLPFSRHTVRYNLLPLVAGWWILPRL 550 (554)
T ss_pred eEECCCCcEEEEEEEEEccCCcEECCcE
Confidence 9999999999999999999998765443
No 132
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=42.00 E-value=88 Score=28.19 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=17.2
Q ss_pred eEEEEEEeCCCccEEEEEEec
Q 002714 735 NLKMTIYNSSDAAMFVRVNTF 755 (889)
Q Consensus 735 pv~l~l~N~s~~~v~v~i~~~ 755 (889)
.|.|.|.|.....+.|+|.-.
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~ 41 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDN 41 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeC
Confidence 688899999888888888753
No 133
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=41.82 E-value=1.5e+02 Score=36.45 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-hhhHHH-----------HHHHHhhhh
Q 002714 18 YCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVM-----------LEQASYCYL 85 (889)
Q Consensus 18 ~~le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~-l~sAll-----------lEqaA~c~l 85 (889)
.--|.|+..+.++--..+.+|-=.+|++.|.. .+..+|.|.+.+-.+...++ ...|.- +|.|=+-|-
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 33567777776664433567777788888875 34557777766665555443 222221 122222111
Q ss_pred cc--CCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCC---------------Cccc----c---------c
Q 002714 86 LS--KPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGS---------------TWSH----I---------K 135 (889)
Q Consensus 86 ~~--~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~---------------~W~~----~---------~ 135 (889)
.+ -.|+-+ -=++-+|--|.+.|+...|++.|++|..+=... .-.. + |
T Consensus 514 kA~~INP~ns---vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e 590 (638)
T KOG1126|consen 514 KAVEINPSNS---VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE 590 (638)
T ss_pred hhhcCCccch---hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch
Confidence 10 112211 235567888999999999999999997542110 0000 0 1
Q ss_pred hhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 136 DHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 136 dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
--+++.||+-+-.+|+.+.|+.||.-
T Consensus 591 s~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 591 SSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred HHHHHHHHHHHHHHccchHHHHhhHH
Confidence 13688888888888888888888844
No 134
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=41.59 E-value=74 Score=36.43 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=44.1
Q ss_pred EEEEEecCCccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCC
Q 002714 395 LEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMP 474 (889)
Q Consensus 395 L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~ 474 (889)
+.+.+.+.- -=.-|-.-+++++++|.|..|+.==...+..-+|+-..-..+ +...|..+. +.
T Consensus 249 V~~~v~~A~-Y~vpgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~-~~~~P~~l~--------A~-------- 310 (381)
T PF04744_consen 249 VKVKVTDAT-YRVPGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTD-DPDYPDELL--------AE-------- 310 (381)
T ss_dssp EEEEEEEEE-EESSSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS--S---TTTE--------ET--------
T ss_pred eEEEEeccE-EecCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccC-CCCCchhhh--------cc--------
Confidence 555544221 123467779999999999999987777777766653211111 222232211 00
Q ss_pred ceeeecCCCcccCCCCeEEEEEEEEe
Q 002714 475 QAVFSFPEGISIQGETPLLWPLWYRA 500 (889)
Q Consensus 475 ~~v~~~p~~~~L~pGes~~~Plwlra 500 (889)
..+ .+..+..|+|||++++.+-.+.
T Consensus 311 ~gL-~vs~~~pI~PGETrtl~V~a~d 335 (381)
T PF04744_consen 311 RGL-SVSDNSPIAPGETRTLTVEAQD 335 (381)
T ss_dssp T-E-EES--S-B-TT-EEEEEEEEE-
T ss_pred Ccc-eeCCCCCcCCCceEEEEEEeeh
Confidence 001 1233667999999999999974
No 135
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=41.05 E-value=1.2e+02 Score=33.95 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCC----cc
Q 002714 18 YCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQ-YKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPP----ML 92 (889)
Q Consensus 18 ~~le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~-~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~----~~ 92 (889)
.-+..|+-+|++++......+.+-+.+..-|++-.+. +...|...++.....+. .--+. ..| ..
T Consensus 103 ~~lk~all~ylk~~~P~d~e~~~mv~l~F~m~~Eia~~~e~~A~~~l~~l~~~~~----------~~~l~-~~~~~~~~L 171 (296)
T PF14649_consen 103 NGLKMALLDYLKRCCPEDKEKFSMVALHFNMYREIAELWEKRARQILKKLVSQPW----------EESLR-DNPELKSEL 171 (296)
T ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ccccc-CCHHHHHHH
Confidence 3688999999999876567888888888888777666 44455544443211100 00000 111 12
Q ss_pred hhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhh
Q 002714 93 HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSV 125 (889)
Q Consensus 93 RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~v 125 (889)
=++-=++.-|+.-|.+.+...+|.+|-.+|.-+
T Consensus 172 ~~am~~~~~AAe~ylk~~~~~~A~~c~~~a~Lv 204 (296)
T PF14649_consen 172 LEAMENFTDAAENYLKDNCLRLAQRCAAQAQLV 204 (296)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 234456778999999999999999999988644
No 136
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=40.83 E-value=1.2e+02 Score=27.57 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=47.4
Q ss_pred CCceeecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee
Q 002714 237 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE 316 (889)
Q Consensus 237 ~~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~ 316 (889)
+...+.+|+.....|+|+|--.+|..+. ++ .... ....|.++.
T Consensus 12 dFG~v~~g~~~~~~v~l~N~s~~p~~f~-v~----~~~~--------------------------------~~~~~~v~~ 54 (102)
T PF14874_consen 12 DFGNVFVGQTYSRTVTLTNTSSIPARFR-VR----QPES--------------------------------LSSFFSVEP 54 (102)
T ss_pred EeeEEccCCEEEEEEEEEECCCCCEEEE-EE----eCCc--------------------------------CCCCEEEEC
Confidence 4556779999999999999999987654 22 1100 001244444
Q ss_pred eeEEEcCCceEEEEEEEEe-CceeEEE
Q 002714 317 VDISLGGAETILVQLMVTP-KVEGILK 342 (889)
Q Consensus 317 ~~i~L~p~Etk~v~L~v~P-~~~G~L~ 342 (889)
..-.|.|+++..+.+.+.| ...|.+.
T Consensus 55 ~~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 55 PSGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred CCCEECCCCEEEEEEEEEeCCCCceEE
Confidence 4567999999999999994 5557543
No 137
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=40.37 E-value=1.7e+02 Score=37.62 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=50.8
Q ss_pred HHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHHhcCCCCccCCCccceEe
Q 002714 99 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIIN 178 (889)
Q Consensus 99 ~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~~~~~~~~~~~LpLP~I~ 178 (889)
+.||+|-|.|-. .. +|...|..+.....=..+.-|-.|.|||.+...||++.|.++++.+.....+- .-||.+-
T Consensus 274 ~~LAn~fyfK~d-y~---~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~G 347 (1018)
T KOG2002|consen 274 NHLANHFYFKKD-YE---RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVG 347 (1018)
T ss_pred HHHHHHHhhccc-HH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccc
Confidence 566777766643 22 23333333333332223444568999999999999999999998855443322 4466665
Q ss_pred ccccEEEecC
Q 002714 179 ISSLKVIFED 188 (889)
Q Consensus 179 ~~~~rV~~~~ 188 (889)
..++.+.-++
T Consensus 348 lgQm~i~~~d 357 (1018)
T KOG2002|consen 348 LGQMYIKRGD 357 (1018)
T ss_pred hhHHHHHhch
Confidence 5555555444
No 138
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=40.12 E-value=2.9e+02 Score=28.68 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=45.6
Q ss_pred hHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHH-HHHhCC--HHHHHHHHHH
Q 002714 95 YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQW-YAVLGM--HDIAVAHMLE 161 (889)
Q Consensus 95 ~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~-~~~l~~--~~~Av~h~l~ 161 (889)
...|+.| |.-|...|....|+.||++|+.+--.. ..+++.+|.. +...|+ .++|.+.+.+
T Consensus 73 ~~~w~~L-g~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 73 SEQWALL-GEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHH-HHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 4456666 789999999999999999999875432 3567788875 467777 4888877755
No 139
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=39.92 E-value=53 Score=33.76 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=41.7
Q ss_pred hHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 103 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 103 g~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
|+.|.+.|....|++||.+++.-..+.+ + .=++.+.+-|.+.+.+++.....++-+
T Consensus 43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~-~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 43 ADHYCKIGDLEEALKAYSRARDYCTSPG--H-KIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhcCCHH--H-HHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 6789999999999999999887332221 1 113568888999999999887666543
No 140
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=37.59 E-value=1.2e+02 Score=32.17 Aligned_cols=70 Identities=20% Similarity=0.204 Sum_probs=47.0
Q ss_pred HHHHHHhCccchhhHHHHHHHHhhhhcc----CCC-cchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCC
Q 002714 60 TVYFRICGEEPLHSAVMLEQASYCYLLS----KPP-MLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGST 130 (889)
Q Consensus 60 ~~l~r~~~~~~l~sAlllEqaA~c~l~~----~~~-~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~ 130 (889)
+||.|..+++. ---.++++|...|... ..| .--.-+.-+-|-|.-+.+.|+...|.+.|.+.....+.+.
T Consensus 125 AWlyR~~~~~~-~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 125 AWLYRDLGDEE-NEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHhhccCCHH-HHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 45555555432 2344566666655442 222 1223355777899999999999999999999999887764
No 141
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=37.17 E-value=44 Score=29.75 Aligned_cols=33 Identities=6% Similarity=0.157 Sum_probs=28.6
Q ss_pred HHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcC
Q 002714 96 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG 128 (889)
Q Consensus 96 Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~ 128 (889)
|.-+|-.|-...++|.+..|+.||.+|+..+..
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 566777788999999999999999999988754
No 142
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=37.06 E-value=1.4e+02 Score=28.21 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=35.6
Q ss_pred eEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccCccCce
Q 002714 735 NLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPF 814 (889)
Q Consensus 735 pv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~f 814 (889)
--+|.|.|.+..+..+.|...... .+
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~------------------------------------------------------~~ 59 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLP------------------------------------------------------GA 59 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-S------------------------------------------------------S-
T ss_pred EEEEEEEECCCCCEEEEEEEecCC------------------------------------------------------Ce
Confidence 468999999998888888865410 14
Q ss_pred EEeccccceEEeCCCceeEEEeEEEEecce
Q 002714 815 IWSGSSASSVRLQPMSTTDIAMKVCLFSPG 844 (889)
Q Consensus 815 ~W~g~~~~~~~l~p~~~~~~~L~~~~~~~G 844 (889)
-|.+ ....++|.|+++.++++.+.+...-
T Consensus 60 ~l~~-~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 60 ELQG-PENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EE-E-S--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred EEEC-CCcceEECCCCEEEEEEEEEECHHH
Confidence 5555 6688999999999999999887654
No 143
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=36.85 E-value=53 Score=28.08 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=29.3
Q ss_pred hHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhc
Q 002714 95 YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 127 (889)
Q Consensus 95 ~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~ 127 (889)
.|+-++--|-.+.+.|+...|+.||..|...+.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 477788889999999999999999999998764
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=36.61 E-value=2.5e+02 Score=28.63 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHH
Q 002714 44 WWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAV 123 (889)
Q Consensus 44 l~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~ 123 (889)
-++-.+...|.+++|.+.+--++--++ ..- -+|+=|++ -+...|....|+.||..|.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp--------------------~~~--~y~~gLG~-~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDA--------------------WSF--DYWFRLGE-CCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc--------------------ccH--HHHHHHHH-HHHHHhhHHHHHHHHHHHH
Confidence 344556777888888775433333332 111 23333333 3467788999999999999
Q ss_pred hhhcCCCccccch-hhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 124 SVYKGSTWSHIKD-HVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 124 ~vY~~~~W~~~~d-hi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.+=. +| ..++.+|..+..+|+.+.|.+.|..
T Consensus 97 ~L~~-------ddp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 97 QIKI-------DAPQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred hcCC-------CCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8622 33 5789999999999999999887754
No 145
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=36.61 E-value=48 Score=25.51 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.2
Q ss_pred hhHhHHhCCCcHHHHHHHHHHHhhhcC
Q 002714 102 SGDRYKKCDQINHAIRTYRSAVSVYKG 128 (889)
Q Consensus 102 Ag~ry~k~g~~~~A~rcy~~A~~vY~~ 128 (889)
-|..|...|+...|.++|+++++..-+
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 378899999999999999999987644
No 146
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=36.44 E-value=1.1e+02 Score=36.13 Aligned_cols=61 Identities=16% Similarity=0.038 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhCccc-hhhH-HHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHH
Q 002714 44 WWVEMLKARHQYKDAATVYFRICGEEP-LHSA-VMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRS 121 (889)
Q Consensus 44 l~~e~l~~~~~~~~Aa~~l~r~~~~~~-l~sA-lllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~ 121 (889)
..+-.|...|.|++|.+.+-++...++ ...| ..+-.. |..|.+.|+...|+.||++
T Consensus 80 NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNL----------------------Acaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 80 NLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNK----------------------ACCHAYREEGKKAADCLRT 137 (453)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHH
Confidence 334455667999999999888777665 2211 233333 3445678999999999999
Q ss_pred HHhhh
Q 002714 122 AVSVY 126 (889)
Q Consensus 122 A~~vY 126 (889)
|+..|
T Consensus 138 ALels 142 (453)
T PLN03098 138 ALRDY 142 (453)
T ss_pred HHHhc
Confidence 99985
No 147
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=36.03 E-value=4.1e+02 Score=25.67 Aligned_cols=84 Identities=12% Similarity=0.231 Sum_probs=46.0
Q ss_pred eecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEE
Q 002714 241 CVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDIS 320 (889)
Q Consensus 241 ~vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~~~i~ 320 (889)
+-.|+...+.|.+.|.-+=++.+. +.+.--.+..+|.+........ .+.... . .+..+ ... ...|+
T Consensus 23 ~~P~q~~~l~v~i~N~s~~~~tv~-v~~~~A~Tn~nG~I~Y~~~~~~----~d~sl~-~-~~~~~------v~~-~~~Vt 88 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNSDKEITVK-VSANTATTNDNGVIDYSQNNPK----KDKSLK-Y-PFSDL------VKI-PKEVT 88 (121)
T ss_pred eCCCCEEEEEEEEEeCCCCCEEEE-EEEeeeEecCCEEEEECCCCcc----cCcccC-c-chHHh------ccC-CcEEE
Confidence 347999999999999888777763 3333333333333332111000 000000 0 01111 111 22499
Q ss_pred EcCCceEEEEEEEEeCce
Q 002714 321 LGGAETILVQLMVTPKVE 338 (889)
Q Consensus 321 L~p~Etk~v~L~v~P~~~ 338 (889)
|+|+|++.|.+.++--+.
T Consensus 89 l~~~~sk~V~~~i~~P~~ 106 (121)
T PF06030_consen 89 LPPNESKTVTFTIKMPKK 106 (121)
T ss_pred ECCCCEEEEEEEEEcCCC
Confidence 999999999999986665
No 148
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.77 E-value=1.8e+02 Score=32.11 Aligned_cols=85 Identities=24% Similarity=0.376 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc----hhhHHHHHHHHhhhhccCCCcchhh
Q 002714 20 MENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP----LHSAVMLEQASYCYLLSKPPMLHKY 95 (889)
Q Consensus 20 le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~----l~sAlllEqaA~c~l~~~~~~~RK~ 95 (889)
-+.++..|++.-.++ .++-++-+|..|.+=..|.|++||..++++..+.+ ...|||..
T Consensus 160 A~~~F~~fi~~YP~s-~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl----------------- 221 (262)
T COG1729 160 AEQAFQAFIKKYPNS-TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL----------------- 221 (262)
T ss_pred HHHHHHHHHHcCCCC-cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH-----------------
Confidence 356777788887764 78889999999999999999999999988886542 33344332
Q ss_pred HHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCC
Q 002714 96 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGS 129 (889)
Q Consensus 96 Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~ 129 (889)
|..-...|+..-|.+.|++...-|-+.
T Consensus 222 -------g~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 222 -------GVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred -------HHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 333356788888888898888888664
No 149
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=35.22 E-value=2.8e+02 Score=30.79 Aligned_cols=77 Identities=22% Similarity=0.202 Sum_probs=48.7
Q ss_pred CceeEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccC
Q 002714 730 SFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLE 809 (889)
Q Consensus 730 ~~c~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 809 (889)
.-...-.++++.|..+.+++|+|.=.-..+. ..+|||.-.-... |.--+
T Consensus 240 ~~~~~~~~itv~N~~~~~v~v~v~d~iPvs~---------------------------~~~I~V~~~~~~~----~~~~~ 288 (317)
T PF13598_consen 240 QRRTYEYTITVRNNKDEPVTVTVEDQIPVSE---------------------------DEDIKVELLEPPE----PNEDE 288 (317)
T ss_pred EEEEEEEEEEEECCCCCCEEEEEEeCCCCCC---------------------------CceEEEEEcCCCC----CcccC
Confidence 4556778999999999999988874332111 1345554431110 10012
Q ss_pred ccCceEEeccccceEEeCCCceeEEEeEEEEecc
Q 002714 810 SVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSP 843 (889)
Q Consensus 810 ~~~~f~W~g~~~~~~~l~p~~~~~~~L~~~~~~~ 843 (889)
..+-+.| ++.|+||+..+|.+...+-.|
T Consensus 289 ~~g~~~W------~~~l~~g~~~~l~~~y~v~~P 316 (317)
T PF13598_consen 289 KDGILEW------KVTLPPGESRTLEFSYEVEYP 316 (317)
T ss_pred CCCEEEE------EEEECCCCEEEEEEEEEEEcC
Confidence 3445555 599999999999998877665
No 150
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=35.06 E-value=99 Score=32.35 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=29.2
Q ss_pred EEecCCceEEEEEec--CCccccCccEEEEEEEEEecCccccceEEE
Q 002714 387 IVIKSLPKLEGLIHP--LPERAYAGDLRHLVLELKNQSDFSVKNLKM 431 (889)
Q Consensus 387 ~V~~~~P~L~v~~~~--lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v 431 (889)
+|-+.|||- |.. -...+.=||...+.-+.+|.+..|+...-+
T Consensus 72 ~~~~~lpW~---F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~g~A~ 115 (188)
T PRK05089 72 NVNGGLPWE---FKPEQRSVDVHPGELNLVFYEAENLSDRPIVGQAI 115 (188)
T ss_pred cCCCCCCce---EEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEe
Confidence 444556653 331 123678899999999999999998766443
No 151
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=34.97 E-value=20 Score=28.07 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=15.9
Q ss_pred eEEEEecceeeecCCcEEEEEE
Q 002714 836 MKVCLFSPGTYDLSNYALNWKL 857 (889)
Q Consensus 836 L~~~~~~~GvYdl~~~~l~~~~ 857 (889)
..|.|..||+|.|. ++...+.
T Consensus 5 ~nW~FT~PG~Y~l~-~~a~~~~ 25 (41)
T TIGR03769 5 ANWVFTKPGTYTLT-VQATATL 25 (41)
T ss_pred cceeeCCCeEEEEE-EEEEEEe
Confidence 57899999999876 5555544
No 152
>PRK15331 chaperone protein SicA; Provisional
Probab=34.83 E-value=1.3e+02 Score=30.79 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=22.9
Q ss_pred HHHhhHhHHhCCCcHHHHHHHHHHHh
Q 002714 99 LVLSGDRYKKCDQINHAIRTYRSAVS 124 (889)
Q Consensus 99 ~vLAg~ry~k~g~~~~A~rcy~~A~~ 124 (889)
+..||.-|...|++..|+.||..|..
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45688899999999999999999987
No 153
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=34.65 E-value=1.1e+02 Score=30.83 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=26.0
Q ss_pred cccCccEEEEEEEEEecCccccceEEEEecC
Q 002714 405 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSH 435 (889)
Q Consensus 405 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~ 435 (889)
.++..-.+-+.|.|+|.|..++++|++.-..
T Consensus 80 ~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~ 110 (145)
T PF14796_consen 80 SLYSPSMVSIQLTFTNNSDEPIKNIHIGEKK 110 (145)
T ss_pred cCCCCCcEEEEEEEEecCCCeecceEECCCC
Confidence 3577788889999999999999999886444
No 154
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=34.48 E-value=93 Score=33.58 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=29.0
Q ss_pred EecCCceEEEEEecC--CccccCccEEEEEEEEEecCccccceEEE
Q 002714 388 VIKSLPKLEGLIHPL--PERAYAGDLRHLVLELKNQSDFSVKNLKM 431 (889)
Q Consensus 388 V~~~~P~L~v~~~~l--P~~ll~GEi~~~~l~L~N~G~~pl~~l~v 431 (889)
|.+.|||- |... ...+.-||...+.-+.+|.+..|+-..-+
T Consensus 117 v~~~lpW~---F~P~q~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A~ 159 (232)
T PTZ00128 117 TGSTMPWE---FEPLQKEVEVLPGETALAFYRAKNRSDKPVIGVAT 159 (232)
T ss_pred CCCCCCce---EEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEe
Confidence 44556653 3322 23688899999999999999998766433
No 155
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=33.88 E-value=1.8e+02 Score=30.30 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=21.7
Q ss_pred cccCccEEEEEEEEEecCccccceEE
Q 002714 405 RAYAGDLRHLVLELKNQSDFSVKNLK 430 (889)
Q Consensus 405 ~ll~GEi~~~~l~L~N~G~~pl~~l~ 430 (889)
.+.=||+-.+.-+-+|.+..|+..-.
T Consensus 88 ~v~pGet~~~~y~a~N~sd~~itg~A 113 (195)
T COG3175 88 YVRPGETNLIFYEAENLSDKPITGQA 113 (195)
T ss_pred EeccCceEEEEEEEecCCCCCceeEE
Confidence 46779999999999999998886643
No 156
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.87 E-value=89 Score=37.70 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=51.2
Q ss_pred cchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 91 MLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 91 ~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+=++||=-.|-=||.|.-.|-..+|+-||..|.+++.|.+=+ .+-||-|+...+++..|=+.|..
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP------~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP------SLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch------HHHHHHHHHHhccHHHHHHHHHH
Confidence 455666667777999999999999999999999999998533 24577777778888887666644
No 157
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=33.85 E-value=2e+02 Score=27.11 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=39.7
Q ss_pred ccCccEEE-EEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCCCc
Q 002714 406 AYAGDLRH-LVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 484 (889)
Q Consensus 406 ll~GEi~~-~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~~~ 484 (889)
+-.|.++- ..+.|.|.+..+.. +.+.+..+.-+.+ ..-....
T Consensus 26 ~~dg~I~N~Y~lkl~Nkt~~~~~-~~i~~~g~~~~~l------------------------------------~~~~~~i 68 (118)
T PF11614_consen 26 LSDGSIRNQYTLKLTNKTNQPRT-YTISVEGLPGAEL------------------------------------QGPENTI 68 (118)
T ss_dssp ----SEEEEEEEEEEE-SSS-EE-EEEEEES-SS-EE-------------------------------------ES--EE
T ss_pred cCCCeEEEEEEEEEEECCCCCEE-EEEEEecCCCeEE------------------------------------ECCCcce
Confidence 45577774 57999999988654 4444443211111 0001245
Q ss_pred ccCCCCeEEEEEEEEec-C---CceeEEEEEEEE
Q 002714 485 SIQGETPLLWPLWYRAA-V---PGKISLSITIYY 514 (889)
Q Consensus 485 ~L~pGes~~~Plwlra~-~---~G~~~l~~LfyY 514 (889)
.|.||++.++|+.|.+| . .|.+.+.|-+..
T Consensus 69 ~v~~g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~ 102 (118)
T PF11614_consen 69 TVPPGETREVPVFVTAPPDALKSGSTPITFTVTD 102 (118)
T ss_dssp EE-TT-EEEEEEEEEE-GGG-SSSEEEEEEEEEE
T ss_pred EECCCCEEEEEEEEEECHHHccCCCeeEEEEEEE
Confidence 68999999999999998 2 477888888874
No 158
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=33.84 E-value=2.2e+02 Score=25.32 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=35.0
Q ss_pred EEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEEcCCceEEE
Q 002714 250 DIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILV 329 (889)
Q Consensus 250 ~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~~~i~L~p~Etk~v 329 (889)
.|.++||=.+++.++++.....+... . ++. ......+.++|.++..+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~---~--------------v~~----------------~~~~~~~~i~~~~~~~v 47 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQ---R--------------VGT----------------GGSLPPFTIPARSSTTV 47 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSS---E--------------EEE----------------EEECE-EEESSSCEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCE---E--------------EEC----------------ccccCCeEECCCCcEEE
Confidence 47889999999999999988776531 0 110 01234799999999988
Q ss_pred EEEEE
Q 002714 330 QLMVT 334 (889)
Q Consensus 330 ~L~v~ 334 (889)
.+.+.
T Consensus 48 ~~~v~ 52 (101)
T PF03168_consen 48 PVPVS 52 (101)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87543
No 159
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=32.62 E-value=2.6e+02 Score=26.02 Aligned_cols=77 Identities=13% Similarity=0.248 Sum_probs=50.1
Q ss_pred cCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCCCccc
Q 002714 407 YAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISI 486 (889)
Q Consensus 407 l~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~~~~L 486 (889)
-.+...++.+.+.|.+..+++++.+...-|..+.+. +. -+.+..|
T Consensus 21 ~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~----------------------------------l~-~~s~~~i 65 (115)
T PF02883_consen 21 PNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQ----------------------------------LQ-PPSSSTI 65 (115)
T ss_dssp CETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEE----------------------------------EE-ESS-SSB
T ss_pred CCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEE----------------------------------Ee-CCCCCee
Confidence 368888999999999999999999886555222211 10 1235567
Q ss_pred CCCCeEEEEEEEEe-----cCCceeEEEEEEEEecCC
Q 002714 487 QGETPLLWPLWYRA-----AVPGKISLSITIYYEMGD 518 (889)
Q Consensus 487 ~pGes~~~Plwlra-----~~~G~~~l~~LfyYe~~~ 518 (889)
.||+..+--+-+.. +......+++-+.|.-.+
T Consensus 66 ~p~~~i~Q~~~v~~~~~~~~~~~~l~~~~~vsy~~~g 102 (115)
T PF02883_consen 66 PPGQQITQVIKVENSPFSEPTPKPLKPRLRVSYNVGG 102 (115)
T ss_dssp -TTTEEEEEEEEEESS-BSTTSSTTEEEEEEEEEETT
T ss_pred CCCCeEEEEEEEEEeecccCCCCCcCeEEEEEEEECC
Confidence 78888877777777 444555677777777654
No 160
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=32.19 E-value=68 Score=22.80 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 138 VHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 138 i~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+.+.+|..+..+|+++.|+.+|-+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~ 26 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQR 26 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHH
Confidence 468899999999999999988754
No 161
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=32.04 E-value=1.1e+02 Score=28.77 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=40.4
Q ss_pred CccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCC
Q 002714 403 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 482 (889)
Q Consensus 403 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~ 482 (889)
|..+..| ..+++|+++|.|..|+. +-||-+|+-... .++|-...++. .=+++|.
T Consensus 12 ~I~lN~g-r~~~~l~V~NtGDRpIQ----VGSH~HF~E~N~----aL~FDR~~A~G-----------------~RLdIpa 65 (101)
T cd00407 12 DIELNAG-REAVTLKVKNTGDRPIQ----VGSHYHFFEVNP----ALKFDREKAYG-----------------MRLDIPA 65 (101)
T ss_pred CeEeCCC-CCEEEEEEEeCCCcceE----EccccchhhcCc----cccccHHHccc-----------------ceecccC
Confidence 4444554 45689999999999874 346766663221 12222111111 1123442
Q ss_pred --CcccCCCCeEEEEEEE
Q 002714 483 --GISIQGETPLLWPLWY 498 (889)
Q Consensus 483 --~~~L~pGes~~~Plwl 498 (889)
....+||+++++.|-=
T Consensus 66 GTavRFEPG~~k~V~LV~ 83 (101)
T cd00407 66 GTAVRFEPGEEKEVELVP 83 (101)
T ss_pred CCeEEECCCCeEEEEEEE
Confidence 3567899999999853
No 162
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=31.99 E-value=70 Score=27.84 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=30.4
Q ss_pred hhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcC
Q 002714 94 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG 128 (889)
Q Consensus 94 K~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~ 128 (889)
.-|+-++--|-...+.|.+..|+.||..|...|..
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999998765
No 163
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.84 E-value=63 Score=37.53 Aligned_cols=24 Identities=38% Similarity=0.760 Sum_probs=20.6
Q ss_pred hHhHHhCCCcHHHHHHHHHHHhhh
Q 002714 103 GDRYKKCDQINHAIRTYRSAVSVY 126 (889)
Q Consensus 103 g~ry~k~g~~~~A~rcy~~A~~vY 126 (889)
|+.|.+||+...|+|||.+|..-.
T Consensus 157 ~dhy~~cG~l~~Alr~YsR~RdYC 180 (466)
T KOG0686|consen 157 GDHYLDCGQLDNALRCYSRARDYC 180 (466)
T ss_pred HHHHHHhccHHHHHhhhhhhhhhh
Confidence 688999999999999999966533
No 164
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=31.63 E-value=88 Score=29.41 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=41.0
Q ss_pred CCccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecC
Q 002714 402 LPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFP 481 (889)
Q Consensus 402 lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p 481 (889)
-+.++..|. ..++|+++|.|..|+. +-||-+|+-.... ++|-...++.. =+++|
T Consensus 11 ~~I~ln~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~E~N~a----L~FDR~~A~G~-----------------RLdIp 64 (101)
T TIGR00192 11 GDITINEGR-KTVSVKVKNTGDRPIQ----VGSHFHFFEVNRA----LDFDRELAFGM-----------------RLDIP 64 (101)
T ss_pred CCEEeCCCC-cEEEEEEEeCCCcceE----EccccchhhcCcc----eeecHhhhcCc-----------------ccccC
Confidence 344556665 5689999999999874 3467666632211 12211111111 11244
Q ss_pred C--CcccCCCCeEEEEEEE
Q 002714 482 E--GISIQGETPLLWPLWY 498 (889)
Q Consensus 482 ~--~~~L~pGes~~~Plwl 498 (889)
. ....+||+++++.|-=
T Consensus 65 aGTavRFEPG~~k~V~LV~ 83 (101)
T TIGR00192 65 SGTAVRFEPGEEKSVELVA 83 (101)
T ss_pred CCCeEeECCCCeEEEEEEE
Confidence 2 3567899999998864
No 165
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.26 E-value=1.7e+02 Score=33.53 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHH----hhHhHHhCCCcHHHHHH
Q 002714 43 LWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVL----SGDRYKKCDQINHAIRT 118 (889)
Q Consensus 43 ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vL----Ag~ry~k~g~~~~A~rc 118 (889)
+..+...-+.|.|.+|-..+||+++++-=-.-+-.-..|.||++.++|+. |..|.| .|+||+-. .-.|-.|
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l---AW~~~lk~~t~~e~fsLL--qlIAn~C 471 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL---AWDMMLKTNTPSERFSLL--QLIANDC 471 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH---HHHHHHhcCCchhHHHHH--HHHHHHH
Confidence 34455555668899999999999997721123444556899999887742 444443 24444433 2345667
Q ss_pred HHHHHhhhcCC
Q 002714 119 YRSAVSVYKGS 129 (889)
Q Consensus 119 y~~A~~vY~~~ 129 (889)
|.-+.--|..+
T Consensus 472 Yk~~eFyyaaK 482 (557)
T KOG3785|consen 472 YKANEFYYAAK 482 (557)
T ss_pred HHHHHHHHHHH
Confidence 76665555544
No 166
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=31.05 E-value=1.1e+02 Score=28.76 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=35.2
Q ss_pred CccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCC
Q 002714 403 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 482 (889)
Q Consensus 403 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~ 482 (889)
+.++..|. .+++|+++|.|..|+. +-||-+|+- . +..++|-...++.. =+++|.
T Consensus 11 ~I~lN~gr-~~~~l~V~N~GDRPIQ----VGSH~HF~E---~-N~aL~FDR~~A~G~-----------------RLdIPa 64 (100)
T PF00699_consen 11 DIELNAGR-ERITLEVTNTGDRPIQ----VGSHYHFFE---V-NPALEFDREAAYGM-----------------RLDIPA 64 (100)
T ss_dssp EEETTTTS-EEEEEEEEE-SSS-EE----EETTS-GGG---S--TTEES-HHHHTTE-----------------EE-SST
T ss_pred cEEecCCC-cEEEEEEEeCCCcceE----EccccCHHH---H-hHHhhhhHHHhCCc-----------------ccCcCC
Confidence 34455554 7889999999999874 346766651 1 11122322222211 123442
Q ss_pred --CcccCCCCeEEEEEE
Q 002714 483 --GISIQGETPLLWPLW 497 (889)
Q Consensus 483 --~~~L~pGes~~~Plw 497 (889)
....+||+++++.|-
T Consensus 65 GTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 65 GTAVRFEPGDTKEVELV 81 (100)
T ss_dssp T-EEEE-TT-EEEEEEE
T ss_pred CCeEEECCCCcEEEEEE
Confidence 356789999999885
No 167
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.48 E-value=69 Score=28.81 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=28.6
Q ss_pred hhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhc
Q 002714 94 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 127 (889)
Q Consensus 94 K~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~ 127 (889)
|-||-.|==|-++...|++..|+-+|++|+.+..
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 6688888888888888999999999988887654
No 168
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=29.76 E-value=3.5e+02 Score=30.38 Aligned_cols=115 Identities=12% Similarity=-0.010 Sum_probs=63.0
Q ss_pred eEEEEEecCCccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchh--------hhhcc-cccccc
Q 002714 394 KLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPA--------CLQKM-TNAEQS 464 (889)
Q Consensus 394 ~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~--------~l~~~-~~~e~~ 464 (889)
-+.++|. .|..+.-||....+|-+.|.|..+.+-.-++.+ ++-...... .....-+. ..+.. ++.+..
T Consensus 157 gv~~sF~-gp~~V~~Ge~F~w~v~ivN~S~~~r~L~l~~~~-~r~~~~~~~-~~~~~~~~~s~~~~~~~~~~~v~~en~~ 233 (306)
T PF12735_consen 157 GVTFSFS-GPSSVKVGEPFSWKVFIVNRSSSPRKLALYVPP-RRRRNDERS-NSPPPNPSSSSNLNNKQIADAVTDENIV 233 (306)
T ss_pred CeEEEEe-CCceEecCCeEEEEEEEEECCCCCeeEEEEecC-ccccccccc-cCCCCCcccccccccccccccceehhHH
Confidence 3455665 468999999999999999999987765544444 221111110 00000000 00000 000000
Q ss_pred ccC-CCCCCC-CceeeecCCC---cccCCCCeEEEEEEEEecCCceeEEEEE
Q 002714 465 VAG-GNFNKM-PQAVFSFPEG---ISIQGETPLLWPLWYRAAVPGKISLSIT 511 (889)
Q Consensus 465 ~~~-~~~~~~-~~~v~~~p~~---~~L~pGes~~~Plwlra~~~G~~~l~~L 511 (889)
..- ...... ...++.+..+ +.|.||+..+.-|-+=|-.+|.+.|.-|
T Consensus 234 ~~~~~~~~~~~~~gli~LsnDiriGpL~P~~c~~~eL~fi~l~~G~~~L~~l 285 (306)
T PF12735_consen 234 QAMQKYSSVEESTGLICLSNDIRIGPLAPGACYSVELRFIALSPGVHNLEGL 285 (306)
T ss_pred HHhhhhcccccCCceEEecccccccccCCCceEEEEEEEEEeccceEeecce
Confidence 000 000000 2234434323 5799999999999999999999988766
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=29.73 E-value=2.9e+02 Score=22.39 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=38.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhh
Q 002714 46 VEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSV 125 (889)
Q Consensus 46 ~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~v 125 (889)
+..+-..|.+++|...+-++...++- .+- -+..-|.-|...|+...|+..|++|+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~----------------------a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPE----------------------AWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHH----------------------HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHH----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556677788888877777766551 111 1223345556778899999999999876
Q ss_pred hc
Q 002714 126 YK 127 (889)
Q Consensus 126 Y~ 127 (889)
+-
T Consensus 61 ~P 62 (65)
T PF13432_consen 61 DP 62 (65)
T ss_dssp ST
T ss_pred Cc
Confidence 53
No 170
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=29.67 E-value=3e+02 Score=24.64 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=43.9
Q ss_pred eecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEE
Q 002714 241 CVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDIS 320 (889)
Q Consensus 241 ~vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~~~i~ 320 (889)
+.+|++..+.|..++-..-++....-.+.++....++.. . + ....+.
T Consensus 17 ~~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i~~p~~~~---------------~---~---------------~~~~~~ 63 (101)
T PF00630_consen 17 AVVGEPATFTVDTRDAGGNPVSSGGDEFQVTITSPDGKE---------------E---P---------------VPVPVE 63 (101)
T ss_dssp EETTSEEEEEEEETTTTSSBEESTSSEEEEEEESSSSES---------------S--------------------EEEEE
T ss_pred eECCCcEEEEEEEccCCCCccccCCceeEEEEeCCCCCc---------------c---c---------------cccceE
Confidence 489999999999999888877765444444443221100 0 0 011233
Q ss_pred EcCCceEEEEEEEEeCceeEEEEE
Q 002714 321 LGGAETILVQLMVTPKVEGILKIV 344 (889)
Q Consensus 321 L~p~Etk~v~L~v~P~~~G~L~I~ 344 (889)
+.....-+..++.+|..+|..+|.
T Consensus 64 v~~~~~G~y~v~y~p~~~G~y~i~ 87 (101)
T PF00630_consen 64 VIDNGDGTYTVSYTPTEPGKYKIS 87 (101)
T ss_dssp EEEESSSEEEEEEEESSSEEEEEE
T ss_pred EEECCCCEEEEEEEeCccEeEEEE
Confidence 333344477888899999987765
No 171
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.16 E-value=3.2e+02 Score=28.37 Aligned_cols=84 Identities=19% Similarity=0.132 Sum_probs=53.8
Q ss_pred CCceeecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee
Q 002714 237 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE 316 (889)
Q Consensus 237 ~~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~ 316 (889)
.....+.|+.+.|.+++.|-=+- ...||.|.=..-++++.. ..+|. .+.
T Consensus 30 l~~~~v~g~~v~V~~~iyN~G~~--~A~dV~l~D~~fp~~~F~-------------------------lvsG~----~s~ 78 (181)
T PF05753_consen 30 LNKYLVEGEDVTVTYTIYNVGSS--AAYDVKLTDDSFPPEDFE-------------------------LVSGS----LSA 78 (181)
T ss_pred ccccccCCcEEEEEEEEEECCCC--eEEEEEEECCCCCccccE-------------------------eccCc----eEE
Confidence 34567789999999999997554 445555541000100000 00110 011
Q ss_pred eeEEEcCCceEEEEEEEEeCceeEEEEEEEEEEec
Q 002714 317 VDISLGGAETILVQLMVTPKVEGILKIVGVRWRLS 351 (889)
Q Consensus 317 ~~i~L~p~Etk~v~L~v~P~~~G~L~I~Gv~~~L~ 351 (889)
.-=.|.|++..+..+.++|++.|.+.+.....+..
T Consensus 79 ~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~ 113 (181)
T PF05753_consen 79 SWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYR 113 (181)
T ss_pred EEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEE
Confidence 12369999999999999999999999988776653
No 172
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.61 E-value=1.6e+02 Score=32.04 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=46.7
Q ss_pred HHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 97 FHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 97 f~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
-|.++ ||-|.+.|+..+|.+-|++|+.+=.+.| .++-.-|-..+..|.++.|...|.+
T Consensus 71 a~~~~-A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G------dVLNNYG~FLC~qg~~~eA~q~F~~ 128 (250)
T COG3063 71 AHLVR-AHYYQKLGENDLADESYRKALSLAPNNG------DVLNNYGAFLCAQGRPEEAMQQFER 128 (250)
T ss_pred HHHHH-HHHHHHcCChhhHHHHHHHHHhcCCCcc------chhhhhhHHHHhCCChHHHHHHHHH
Confidence 45555 5899999999999999999998754443 4556667778888999999988876
No 173
>KOG3620 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.22 E-value=1.3e+02 Score=39.46 Aligned_cols=103 Identities=23% Similarity=0.214 Sum_probs=59.2
Q ss_pred ccCCceeecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCC-Cccc--cCCC-----CCcc-ccccccccccccccccc
Q 002714 235 FEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRS-DEME--SDSN-----SSTT-ELQNDEESKLLTTTGEM 305 (889)
Q Consensus 235 ~~~~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~-~~~~--~~~~-----~~~~-~~~~~~~~~~P~~~~~~ 305 (889)
.-+.+....|..-.+.++|.||=++||.|.=|-|..--.++. -... .... .+.+ +++-....++|...+ +
T Consensus 690 ~l~FPaTalg~~~i~~iTL~NPs~vPV~lQ~iPL~lYpdpe~lV~Lt~r~~~~ev~misltT~eFtlk~~sa~P~~~g-~ 768 (1626)
T KOG3620|consen 690 ILPFPATALGQVQIQWITLTNPSQVPVLLQYIPLVLYPDPEFLVRLTQRSLPHEVIMISLTTCEFTLKEVSALPEAYG-L 768 (1626)
T ss_pred CCCCchhhccceeEEEEEecCCCCCceEeeeeeecccCCHHHHHHHHHhhccceeEEEeeeeeEEEeeccccCchhhc-c
Confidence 345777889999999999999999999999887654222210 0000 0000 0110 111111223443111 1
Q ss_pred CCCCCceeeeeeeEEEcCCceEEEEEEEEeCceeE
Q 002714 306 NSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGI 340 (889)
Q Consensus 306 ~~~~~~f~~~~~~i~L~p~Etk~v~L~v~P~~~G~ 340 (889)
..+.+.| .+..+.|.|+|+++|.+.++|..-+.
T Consensus 769 ~~e~sR~--~iL~liLkPgekkrv~v~FtP~dy~k 801 (1626)
T KOG3620|consen 769 NHEMSRY--NILPLILKPGEKKRVPVTFTPQDYEK 801 (1626)
T ss_pred ccccccc--ccceeeecCccceeeeeeeeccCccc
Confidence 1111111 14579999999999999999997764
No 174
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=28.07 E-value=1.6e+02 Score=35.01 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=56.4
Q ss_pred hhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 94 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 94 K~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+-.+.+.++|+-+.++|+.+.|..-|+.|+..+-...| +-..+|+.+...|++.+|++.+.+
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~------l~~~~a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL------LQLNLAQALLKGGKPQEAIRILNR 399 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH------HHHHHHHHHHhcCChHHHHHHHHH
Confidence 56788999999999999999999999999999988876 667899999999999999988865
No 175
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=27.52 E-value=89 Score=36.43 Aligned_cols=66 Identities=20% Similarity=0.259 Sum_probs=52.6
Q ss_pred cchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHH
Q 002714 91 MLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAH 158 (889)
Q Consensus 91 ~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h 158 (889)
|--..++-+.|-|+|..|.|...--..+|..|++| |..=-....-|+-.||--+++|+|+..|+++
T Consensus 12 ~q~~SCleLalEGERLck~gdcraGv~ff~aA~qv--GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 12 MQDRSCLELALEGERLCKMGDCRAGVDFFKAALQV--GTEDLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred hhhhHHHHHHHHHHHHHhccchhhhHHHHHHHHHh--cchHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 34456888999999999999999999999999998 2211111224788999999999999999863
No 176
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.
Probab=27.16 E-value=3.7e+02 Score=31.83 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=70.9
Q ss_pred CCceEEEEecCCceEEEE--EecCCccccCccEEEEEEEEEecCcccc--ceEEEEecCCceEEeccCCCCC--------
Q 002714 381 SNDLKFIVIKSLPKLEGL--IHPLPERAYAGDLRHLVLELKNQSDFSV--KNLKMKVSHPRFLSIGNRDDMT-------- 448 (889)
Q Consensus 381 d~rL~~~V~~~~P~L~v~--~~~lP~~ll~GEi~~~~l~L~N~G~~pl--~~l~v~~s~p~~~~~g~~~~~~-------- 448 (889)
...+++.|++..|...+. ++..--+.=.|.+....|+|+|.|..|| +-++|..-. .+++.+.....
T Consensus 133 ~l~I~I~~Tk~v~~~g~p~~id~~l~Ey~qGD~I~GyvtI~N~S~~pIpFdMFyV~lEG--~~~v~~~~~~~~~~~~~~k 210 (438)
T PF04425_consen 133 PLEIEIYVTKDVGKPGKPPEIDPSLKEYTQGDIIHGYVTIENTSSKPIPFDMFYVSLEG--TISVVDSKSPSSKKPRTVK 210 (438)
T ss_pred ceEEEEEEeccCCCCCCCcccCcccccccCCCEEEEEEEEEECCCCCcccceEEEEEEE--EEEEcccccccccccHHHH
Confidence 456777888888877652 1122236778999999999999999998 445555554 56665541111
Q ss_pred -----Ccchhhhhccccccc---cccCCCCCCCCceeeecCCCcccCCCCeEEEEEEEEecC
Q 002714 449 -----KEFPACLQKMTNAEQ---SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAV 502 (889)
Q Consensus 449 -----~~~p~~l~~~~~~e~---~~~~~~~~~~~~~v~~~p~~~~L~pGes~~~Plwlra~~ 502 (889)
.++.++-.+...... ....+...-..+..+.+|....|+||.+-.-+++++=|.
T Consensus 211 kFL~M~D~sASws~~~i~~~~~~~~~~~~~Dp~Dgt~lgl~~~r~l~p~~~Yk~fF~FkiP~ 272 (438)
T PF04425_consen 211 KFLRMFDFSASWSYANIDRLVGDNYCPGEVDPYDGTYLGLPNKRILEPGVKYKKFFTFKIPE 272 (438)
T ss_pred HHHHhhcceecccccccccccccccCCccccCCCCeeEeCCCCceecCCCeEeceeEEeCCc
Confidence 111111111110000 000001111233466688889999999999999999873
No 177
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=26.64 E-value=98 Score=27.58 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=28.0
Q ss_pred HHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcC
Q 002714 96 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG 128 (889)
Q Consensus 96 Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~ 128 (889)
|.-++--|-...++|....|+.||..|..++-.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 455666778889999999999999999998755
No 178
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=26.63 E-value=90 Score=21.43 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHhCCHHHHHHHHH
Q 002714 138 VHFHIGQWYAVLGMHDIAVAHML 160 (889)
Q Consensus 138 i~~~lgr~~~~l~~~~~Av~h~l 160 (889)
.++.+|+.+...|+++.|.+++-
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46789999999999999998763
No 179
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=26.20 E-value=2.8e+02 Score=28.13 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=25.0
Q ss_pred ceEEEEecCCceEEEEEecC--CccccCccEEEEEEEEEecCccccceEEE
Q 002714 383 DLKFIVIKSLPKLEGLIHPL--PERAYAGDLRHLVLELKNQSDFSVKNLKM 431 (889)
Q Consensus 383 rL~~~V~~~~P~L~v~~~~l--P~~ll~GEi~~~~l~L~N~G~~pl~~l~v 431 (889)
++.-++.+.|||= |... ...+.=||...+.-+.+|.+..|+....+
T Consensus 41 ~F~a~~~~~lpW~---F~P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g~A~ 88 (152)
T PF04442_consen 41 RFDANVNPGLPWE---FKPEQRSVKVHPGETALVFYEATNPSDKPITGQAI 88 (152)
T ss_dssp EEEEEE-TTS-EE---EE-S-SEEEEETT--EEEEEEEEE-SSS-EE---E
T ss_pred EEEeecCCCCceE---EEeeeeeEEeCCCCEEEEEEEEECCCCCcEEEEEe
Confidence 4444556667753 3211 23578899999999999999998766443
No 180
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=26.07 E-value=1e+02 Score=26.77 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=29.6
Q ss_pred hhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcC
Q 002714 94 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG 128 (889)
Q Consensus 94 K~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~ 128 (889)
..|+-++-.|-...+.|.+..|+.||..|...|..
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34666777888899999999999999999988754
No 181
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=26.07 E-value=1.9e+02 Score=26.64 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=16.1
Q ss_pred eEEeCCCceeEEEeEEEEecceeeecC
Q 002714 823 SVRLQPMSTTDIAMKVCLFSPGTYDLS 849 (889)
Q Consensus 823 ~~~l~p~~~~~~~L~~~~~~~GvYdl~ 849 (889)
...|+||++..+.+ -...||+|++-
T Consensus 67 ~~~l~~g~~~~~~f--~~~~~G~y~~~ 91 (104)
T PF13473_consen 67 SKVLPPGETATVTF--TPLKPGEYEFY 91 (104)
T ss_dssp EEEE-TT-EEEEEE--EE-S-EEEEEB
T ss_pred EEEECCCCEEEEEE--cCCCCEEEEEE
Confidence 35799999987775 46899999874
No 182
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=25.87 E-value=8.8e+02 Score=26.32 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=29.4
Q ss_pred eeeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEE
Q 002714 476 AVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITI 512 (889)
Q Consensus 476 ~v~~~p~~~~L~pGes~~~Plwlra~~~G~~~l~~Lf 512 (889)
.++..|.-..|.||++..+-|.-+++...+...+++|
T Consensus 76 eLiaSP~~l~L~pg~~q~IRli~lg~~~kE~~YRl~~ 112 (234)
T PRK15308 76 GLVVSPEKFALPAGTTRTVRVISLQAPEREEAWRVYF 112 (234)
T ss_pred cEEEcCceeEECCCCeEEEEEEEcCCCCcEEEEEEEE
Confidence 4666788899999999999999888754455567766
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.67 E-value=3.3e+02 Score=34.00 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=54.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhCcc-----c--------hhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCC
Q 002714 45 WVEMLKARHQYKDAATVYFRICGEE-----P--------LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQ 111 (889)
Q Consensus 45 ~~e~l~~~~~~~~Aa~~l~r~~~~~-----~--------l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~ 111 (889)
..|+.|..|.+=+||+.|.+|++++ + +.+|||.|+--..-. -..+-.+.|.
T Consensus 929 aIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik----------------~~~~~~~~g~ 992 (1189)
T KOG2041|consen 929 AIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIK----------------ELRKIDKHGF 992 (1189)
T ss_pred HHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH----------------HhhhhhhcCc
Confidence 4556666677777888888888654 1 345666554322111 1112223344
Q ss_pred cHHHHHHHH-----HHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHH
Q 002714 112 INHAIRTYR-----SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHML 160 (889)
Q Consensus 112 ~~~A~rcy~-----~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l 160 (889)
...|...+. .+-+ +....|..+|-+=.+-|+++..+.|..+.|++--+
T Consensus 993 ~~dat~lles~~l~~~~r-i~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal 1045 (1189)
T KOG2041|consen 993 LEDATDLLESGLLAEQSR-ILENTWRGAEAYHFMILAQRQLFEGRVKDALQTAL 1045 (1189)
T ss_pred chhhhhhhhhhhhhhHHH-HHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 433433221 1111 12235777777666778888888888888876443
No 184
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.59 E-value=2.5e+02 Score=34.63 Aligned_cols=98 Identities=18% Similarity=0.131 Sum_probs=51.3
Q ss_pred HHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHH
Q 002714 78 EQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVA 157 (889)
Q Consensus 78 EqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~ 157 (889)
|-|+.||-.+-..-.|-|--|+-| |--|.|.+|...|..-|..|+.+= . -.--|.-.+|+.+..+|+.|.|+.
T Consensus 472 d~a~~~fr~Al~~~~rhYnAwYGl-G~vy~Kqek~e~Ae~~fqkA~~IN--P----~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 472 DKAMKSFRKALGVDPRHYNAWYGL-GTVYLKQEKLEFAEFHFQKAVEIN--P----SNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred HhHHHHHHhhhcCCchhhHHHHhh-hhheeccchhhHHHHHHHhhhcCC--c----cchhHHhhhhHHHHHhhhhhHHHH
Confidence 445555544433444555555554 455566666666666666665541 1 122355566667777777777766
Q ss_pred HHHHhcCCCCccCCCccceEeccccEEE
Q 002714 158 HMLEKTGKTFEVVKPRLPIINISSLKVI 185 (889)
Q Consensus 158 h~l~~~~~~~~~~~LpLP~I~~~~~rV~ 185 (889)
.|-+.- . .-+.=|||.+...++.+-
T Consensus 545 ~~~~A~--~-ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 545 LYEKAI--H-LDPKNPLCKYHRASILFS 569 (638)
T ss_pred HHHHHH--h-cCCCCchhHHHHHHHHHh
Confidence 553310 0 013346777766554443
No 185
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.14 E-value=6.2e+02 Score=28.06 Aligned_cols=114 Identities=12% Similarity=0.114 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHH---------------H
Q 002714 37 NATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLV---------------L 101 (889)
Q Consensus 37 ~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~v---------------L 101 (889)
..-|..-+.+-.|.+.|.|++|-..+-++.++|+.-.+.=.-..|. +...+ .|+-|..-+ -
T Consensus 84 ~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAi--lka~G--K~l~aIk~ln~YL~~F~~D~EAW~e 159 (289)
T KOG3060|consen 84 GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAI--LKAQG--KNLEAIKELNEYLDKFMNDQEAWHE 159 (289)
T ss_pred CChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHH--HHHcC--CcHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4567788888889999999999999999999987444443344444 22222 122222211 2
Q ss_pred hhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchh-hhhhHHHHHHHhCCHHH---HHHHHHH
Q 002714 102 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDH-VHFHIGQWYAVLGMHDI---AVAHMLE 161 (889)
Q Consensus 102 Ag~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dh-i~~~lgr~~~~l~~~~~---Av~h~l~ 161 (889)
+++-|...|++..|..||.+.+-. .+ ..| .+-.+|...+.+|..++ |-+|+.+
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~---~P----~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLI---QP----FNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHc---CC----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 467888999999999999988743 11 223 34567777777776543 4455544
No 186
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=24.91 E-value=1.9e+02 Score=34.01 Aligned_cols=74 Identities=20% Similarity=0.222 Sum_probs=51.6
Q ss_pred HHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHH
Q 002714 77 LEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAV 156 (889)
Q Consensus 77 lEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av 156 (889)
||+|-.||+.. ..-+|-.+--+|--|+-|+....+.+|+..|.+|..+--.. -.|.-.||.+|-..|+-..|.
T Consensus 540 ldeald~f~kl-h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~d------p~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 540 LDEALDCFLKL-HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND------PAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC------HHHHHHHHHHhhcccchhhhh
Confidence 57777788743 23456667777777888888888888888888887664322 256777777777777777765
Q ss_pred H
Q 002714 157 A 157 (889)
Q Consensus 157 ~ 157 (889)
.
T Consensus 613 q 613 (840)
T KOG2003|consen 613 Q 613 (840)
T ss_pred h
Confidence 4
No 187
>PRK13203 ureB urease subunit beta; Reviewed
Probab=24.44 E-value=1.8e+02 Score=27.48 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=39.5
Q ss_pred CccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCC
Q 002714 403 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 482 (889)
Q Consensus 403 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~ 482 (889)
|.++..| ...++|+++|.|..|+. +-||-+|+-.... ++|-...++.. =+++|.
T Consensus 12 ~I~ln~g-r~~~~l~V~NtGDRPIQ----VGSH~HF~E~N~a----L~FDR~~A~G~-----------------RLdIpa 65 (102)
T PRK13203 12 EIELNAG-RETVTLTVANTGDRPIQ----VGSHYHFFEVNPA----LSFDREAARGM-----------------RLNIPA 65 (102)
T ss_pred CEEeCCC-CCEEEEEEEeCCCCceE----EccccchhhcCcc----hhccHhhhcCc-----------------ccccCC
Confidence 3344444 35689999999999874 3467666632211 12211111111 112442
Q ss_pred --CcccCCCCeEEEEEEE
Q 002714 483 --GISIQGETPLLWPLWY 498 (889)
Q Consensus 483 --~~~L~pGes~~~Plwl 498 (889)
....+||+++++.|-=
T Consensus 66 GTavRFEPG~~k~V~LV~ 83 (102)
T PRK13203 66 GTAVRFEPGQTREVELVP 83 (102)
T ss_pred CCeEeECCCCeEEEEEEE
Confidence 3567899999998863
No 188
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=24.20 E-value=1.3e+02 Score=26.24 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=37.2
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHH
Q 002714 109 CDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 159 (889)
Q Consensus 109 ~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~ 159 (889)
.|+...|+..|.+++....... ++-..+.||+.++..|+++.|+..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~----~~~~~~~la~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP----NSAYLYNLAQCYFQQGKYEEAIELL 48 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH----HHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh----hHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4677889999999998876521 3346677999999999999998877
No 189
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=24.09 E-value=3.1e+02 Score=26.36 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=40.5
Q ss_pred HHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccch----------------hhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 100 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKD----------------HVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 100 vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~d----------------hi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+-.|..-...|....+..+|.+|+.+|+|.-+..+.+ .+...++..+...|+++.|++.+.+
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4456666778899999999999999999844333221 1344555666778999998876644
No 190
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=24.09 E-value=66 Score=20.63 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=21.3
Q ss_pred HhhHhHHhCCCcHHHHHHHHHHHhhh
Q 002714 101 LSGDRYKKCDQINHAIRTYRSAVSVY 126 (889)
Q Consensus 101 LAg~ry~k~g~~~~A~rcy~~A~~vY 126 (889)
.-|..|...|+...|..||.+|+.+.
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 34677888899999999999998764
No 191
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=24.03 E-value=1.2e+02 Score=26.60 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=29.7
Q ss_pred hhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcC
Q 002714 94 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG 128 (889)
Q Consensus 94 K~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~ 128 (889)
..|..++--|-...+.|.+..|+.||.+|...|..
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45667777788899999999999999999988753
No 192
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=23.91 E-value=3.7e+02 Score=25.88 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=44.8
Q ss_pred HHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 100 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 100 vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+-++....+.|....|.+-+++|+-+=....|.+. ..|..|-+.....+|..+++-.+++
T Consensus 13 l~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~~~H~--~~H~~ML~~a~r~rd~rEv~GQ~~R 72 (112)
T PF12487_consen 13 LEAAREALAAGDLQQAWRHLERAHILGQPYPWLHT--RVHWAMLRFALRQRDRREVLGQLLR 72 (112)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhHHhcCCchhHHH--HHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33455566789999999999999988766666655 3556778888888998888654444
No 193
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=23.88 E-value=70 Score=23.56 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=24.3
Q ss_pred HHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHH
Q 002714 118 TYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAV 156 (889)
Q Consensus 118 cy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av 156 (889)
||++|+++--+- --.++.||..+...|+++.|+
T Consensus 1 ~y~kAie~~P~n------~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNN------AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCC------HHHHHHHHHHHHHCcCHHhhc
Confidence 677777763211 135789999999999999986
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=23.67 E-value=2e+02 Score=29.81 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=46.2
Q ss_pred HHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHH
Q 002714 100 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 159 (889)
Q Consensus 100 vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~ 159 (889)
--.|......|+...|+..|.....-|-++.| -+...+.+|.-++..|+++.|+..+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~---a~~A~l~la~a~y~~~~y~~A~~~~ 65 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPY---APQAQLMLAYAYYKQGDYEEAIAAY 65 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT---HHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH---HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34677888999999999999999999998876 4567899999999999999998654
No 195
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=23.45 E-value=93 Score=35.49 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=24.6
Q ss_pred HhhHhHHhCCCcHHHHHHHHHHHhhhc
Q 002714 101 LSGDRYKKCDQINHAIRTYRSAVSVYK 127 (889)
Q Consensus 101 LAg~ry~k~g~~~~A~rcy~~A~~vY~ 127 (889)
=-|+.|-|.|++..|+.||..++.+|-
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P 128 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYP 128 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCC
Confidence 348999999999999999999999886
No 196
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=23.25 E-value=1.1e+02 Score=23.46 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.8
Q ss_pred hhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 138 VHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 138 i~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
..+.+|+.+..+|+++.|++.|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 357899999999999999988755
No 197
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=23.10 E-value=93 Score=21.55 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.4
Q ss_pred hhhHHHHHHHhCCHHHHHHHHHH
Q 002714 139 HFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 139 ~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.|.+|+.+..+|+.+.|++.|-+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~ 25 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQR 25 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHH
Confidence 57899999999999999887643
No 198
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.04 E-value=3.3e+02 Score=30.64 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=41.0
Q ss_pred hhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 102 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 102 Ag~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
=|-.|++.|+...|..--+.|+.+ ...-| -.+-+||+.+..+|.+..|++.|-+
T Consensus 121 RAAAy~~Lg~~~~AVkDce~Al~i-Dp~ys-----kay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 121 RAAAYSKLGEYEDAVKDCESALSI-DPHYS-----KAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc-ChHHH-----HHHHHHHHHHHccCcHHHHHHHHHh
Confidence 344678999999999988888864 22211 1457899999999999999988644
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=22.67 E-value=2.5e+02 Score=23.31 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=36.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhCccchhhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhh
Q 002714 47 EMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVY 126 (889)
Q Consensus 47 e~l~~~~~~~~Aa~~l~r~~~~~~l~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY 126 (889)
+++-..+.+++|...+-++...+|- +. .....-|.-|.+.|.+..|+.+|.+++..-
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~----------------------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DP----------------------ELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cc----------------------hhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3455566677777766666655541 11 222234445567788899999999998664
Q ss_pred c
Q 002714 127 K 127 (889)
Q Consensus 127 ~ 127 (889)
.
T Consensus 60 p 60 (73)
T PF13371_consen 60 P 60 (73)
T ss_pred C
Confidence 3
No 200
>PRK13204 ureB urease subunit beta; Reviewed
Probab=22.57 E-value=2.1e+02 Score=28.92 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=41.9
Q ss_pred EecCCccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceee
Q 002714 399 IHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVF 478 (889)
Q Consensus 399 ~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~ 478 (889)
+..-+.++..|. ..++|+++|.|..||. +-||-.|+-.... ++|-...++.. =+
T Consensus 31 ~~~~~I~lN~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~EvN~a----L~FDR~~A~G~-----------------RL 84 (159)
T PRK13204 31 LAKDPIEINQGR-PRTTLTVRNTGDRPIQ----IGSHFHFFEVNRY----LEFDRSKAFGL-----------------RL 84 (159)
T ss_pred eCCCCeEeCCCC-cEEEEEEEeCCCCceE----eccccchhhcCcc----ccccHhhhcCc-----------------cc
Confidence 333445555554 4588999999999874 4567666632211 22221111111 11
Q ss_pred ecCC--CcccCCCCeEEEEEEE
Q 002714 479 SFPE--GISIQGETPLLWPLWY 498 (889)
Q Consensus 479 ~~p~--~~~L~pGes~~~Plwl 498 (889)
++|. ....+||+++++.|.=
T Consensus 85 dIPAGTAVRFEPG~~k~V~LV~ 106 (159)
T PRK13204 85 DIPANTAVRFEPGDEKEVTLVP 106 (159)
T ss_pred ccCCCCeEeECCCCeeEEEEEE
Confidence 2442 3567899999999863
No 201
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.41 E-value=1.6e+02 Score=32.37 Aligned_cols=65 Identities=23% Similarity=0.247 Sum_probs=47.1
Q ss_pred hhHHHHHHHHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcC-CCccccchhh
Q 002714 72 HSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG-STWSHIKDHV 138 (889)
Q Consensus 72 ~sAlllEqaA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~-~~W~~~~dhi 138 (889)
+.|=+.|+||.||-..+.+..||= -+.=|.+.|+...-..||-..|.+|.-+-+. ..|+.+.|.+
T Consensus 29 gaas~yekAAvafRnAk~feKakd--cLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKD--CLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 678889999999976665544444 4556667888888888888888888766554 5677665543
No 202
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=22.30 E-value=1e+03 Score=25.84 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=87.1
Q ss_pred ceeecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 002714 239 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 318 (889)
Q Consensus 239 ~~~vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~~~ 318 (889)
....+||.+.--+-+.|.-..+| .++.+.++......... -++. ..... ....
T Consensus 8 G~iylGEtF~~~l~~~N~s~~~v--~~v~ikvemqT~s~~~r---~~L~----~~~~~------------------~~~~ 60 (249)
T PF06159_consen 8 GSIYLGETFSCYLSVNNDSNKPV--RNVRIKVEMQTPSQSLR---LPLS----DNENS------------------DSPV 60 (249)
T ss_pred CCEeecCCEEEEEEeecCCCCce--EEeEEEEEEeCCCCCcc---ccCC----CCccc------------------cccc
Confidence 34669999999999999665554 78888888776532100 0000 00000 0012
Q ss_pred EEEcCCceEEEEEEEEeCceeEEEE-EEEEEEeccceeeEEEeecchhhhhcccccccccCCCCCceEEEEecCCceEEE
Q 002714 319 ISLGGAETILVQLMVTPKVEGILKI-VGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEG 397 (889)
Q Consensus 319 i~L~p~Etk~v~L~v~P~~~G~L~I-~Gv~~~L~~~v~g~~~F~i~g~rl~~tK~kr~~~~~pd~rL~~~V~~~~P~L~v 397 (889)
..|.|+++....+..-=++.|.-.+ ..|.|.-.....|+ +| ...+-.+|.|.+| |+|
T Consensus 61 ~~L~p~~~l~~iv~~~lkE~G~h~L~c~VsY~~~~~~~g~---------------~~----tfRK~ykF~v~~P---L~V 118 (249)
T PF06159_consen 61 ASLAPGESLDFIVSHELKELGNHTLVCTVSYTDPTETSGE---------------RR----TFRKFYKFQVLNP---LSV 118 (249)
T ss_pred cccCCCCeEeEEEEEEeeecCceEEEEEEEEecCcccCCc---------------cc----eEeeeeEEeCCCC---cEE
Confidence 4599999999999999999997544 45556644111121 00 0112345666544 344
Q ss_pred E--EecCCc--cccCccEEEEEEEEEecCcccc--ceEEEEecC
Q 002714 398 L--IHPLPE--RAYAGDLRHLVLELKNQSDFSV--KNLKMKVSH 435 (889)
Q Consensus 398 ~--~~~lP~--~ll~GEi~~~~l~L~N~G~~pl--~~l~v~~s~ 435 (889)
+ +..++. ..-..+..-+.+.|.|++..|+ +.+.+-...
T Consensus 119 ktK~~~~~~~~~~~~~~~~~LEaqlqN~s~~pl~Le~v~lep~~ 162 (249)
T PF06159_consen 119 KTKVYNLEDDSSLSPRERVFLEAQLQNISSGPLFLEKVKLEPSP 162 (249)
T ss_pred EEEEEecCCccccccceeEEEEEEEEecCCCceEEEEEEeecCC
Confidence 3 554443 2456667778888999999997 555554333
No 203
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=22.29 E-value=1.2e+02 Score=22.36 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=18.0
Q ss_pred hhHHHHHHHhCCHHHHHHHHHH
Q 002714 140 FHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 140 ~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
..||+.+..+|+++.|+..+.+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 5799999999999999987644
No 204
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=22.27 E-value=6.9e+02 Score=28.75 Aligned_cols=55 Identities=11% Similarity=-0.063 Sum_probs=41.5
Q ss_pred HHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHH
Q 002714 99 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 159 (889)
Q Consensus 99 ~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~ 159 (889)
.++++.-+...|+...|+.-|+++....-... .....+++.+...|+++.|++.+
T Consensus 156 ~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~------~al~ll~~~~~~~gdw~~a~~~l 210 (398)
T PRK10747 156 EITRVRIQLARNENHAARHGVDKLLEVAPRHP------EVLRLAEQAYIRTGAWSSLLDIL 210 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHhHHHHHHHH
Confidence 34668888889999999999888887764443 45677788888888888887443
No 205
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=22.04 E-value=1.6e+02 Score=27.56 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=16.7
Q ss_pred eeeeEEEcCCceEEEEEEEEeCc
Q 002714 315 SEVDISLGGAETILVQLMVTPKV 337 (889)
Q Consensus 315 ~~~~i~L~p~Etk~v~L~v~P~~ 337 (889)
....|+++|++++.|.+.+.|..
T Consensus 60 ~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 60 SPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp --EEEEE-TTEEEEEEEEEE--G
T ss_pred CCCeEEECCCCEEEEEEEEEehh
Confidence 34579999999999999999954
No 206
>PLN03218 maturation of RBCL 1; Provisional
Probab=21.87 E-value=1e+03 Score=31.64 Aligned_cols=52 Identities=8% Similarity=-0.049 Sum_probs=26.3
Q ss_pred HhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHH
Q 002714 104 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHML 160 (889)
Q Consensus 104 ~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l 160 (889)
+.|.++|+...|++.|+..... ++. -.-.....|...+...|++++|++.|.
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~----g~~-PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSI----KLR-PTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4556666666666666554321 100 011334455555666666666665553
No 207
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=21.82 E-value=7.8e+02 Score=29.82 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=43.7
Q ss_pred HHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 97 FHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 97 f~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.|.++|-... ..|+...|.+-|++|+.+= ..| --++-+|+.+...|+.++|+.++.+
T Consensus 422 ~~~ala~~~~-~~g~~~~A~~~l~rAl~L~--ps~-----~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 422 IYEILAVQAL-VKGKTDEAYQAINKAIDLE--MSW-----LNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHcC--CCH-----HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3555655443 4699999999999999863 222 2567889999999999999998865
No 208
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=21.63 E-value=2e+02 Score=26.85 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=19.4
Q ss_pred EeccccceEEeCCCceeEEEeEEEEec
Q 002714 816 WSGSSASSVRLQPMSTTDIAMKVCLFS 842 (889)
Q Consensus 816 W~g~~~~~~~l~p~~~~~~~L~~~~~~ 842 (889)
+......+++|.||++.+|.+.+-..+
T Consensus 56 ~~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 56 TVSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp EEE---EEEEE-TTEEEEEEEEEE--G
T ss_pred eEEeCCCeEEECCCCEEEEEEEEEehh
Confidence 888999999999999999999988755
No 209
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=21.54 E-value=7.2e+02 Score=28.64 Aligned_cols=110 Identities=10% Similarity=-0.028 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCccc-hhhHHHHHHHH-------hh----hhccCCCcchhhHHHHHHhhHhHHh
Q 002714 41 CGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQAS-------YC----YLLSKPPMLHKYGFHLVLSGDRYKK 108 (889)
Q Consensus 41 ~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~-l~sAlllEqaA-------~c----~l~~~~~~~RK~Af~~vLAg~ry~k 108 (889)
..+.++..+-..|.+++|...+.+.....+ -..+++.-+.. .- ++. +.| .-+--.+.-|.-+.+
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk-~~P---~~~~l~l~lgrl~~~ 340 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIK-QHG---DTPLLWSTLGQLLMK 340 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHh-hCC---CCHHHHHHHHHHHHH
Confidence 445667777777888888888877766432 22222222110 00 111 111 123345666788888
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 109 CDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 109 ~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.|+...|...|+.++..-- .+..+..|++....+|+.+.|..++..
T Consensus 341 ~~~~~~A~~~le~al~~~P-------~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 341 HGEWQEASLAFRAALKQRP-------DAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred CCCHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999987632 234456789999999999999887754
No 210
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=21.26 E-value=6.3e+02 Score=28.97 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHH---HhcCCHHHHHHHHHHHhCccc--hhhHHHHHHHHhhhhccCCCcchhhHH-------------H
Q 002714 37 NATRCGLWWVEML---KARHQYKDAATVYFRICGEEP--LHSAVMLEQASYCYLLSKPPMLHKYGF-------------H 98 (889)
Q Consensus 37 ~AlR~~ll~~e~l---~~~~~~~~Aa~~l~r~~~~~~--l~sAlllEqaA~c~l~~~~~~~RK~Af-------------~ 98 (889)
+-+--|=.++|+- .....++.|-.++-|+...++ +|+.+++-+.+. ..+.+-|+-- -
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-----~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVEL-----AKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH-----hccchHHHHHHHHHHHHhChHHHH
Confidence 3333444444442 233446666667777776664 777777766655 1111111110 0
Q ss_pred HH--HhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 99 LV--LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 99 ~v--LAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
+| +=-+.|.+.|+..-.+-.+.++.+.|.+.. +...+.+.....+-.+.|...+-+
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-------~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-------AELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-------HHHHHHHHHHHhhChHHHHHHHHH
Confidence 11 112556778888888888888888887763 445555555555556666555433
No 211
>PRK13198 ureB urease subunit beta; Reviewed
Probab=21.15 E-value=2.3e+02 Score=28.57 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=42.6
Q ss_pred EecCCccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceee
Q 002714 399 IHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVF 478 (889)
Q Consensus 399 ~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~ 478 (889)
+..-+..+..|- ..++|+++|.|..|+. +-||-.|+-.... +.|-...++.. =+
T Consensus 36 ~~~g~I~lN~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~EvN~a----L~FDR~~A~G~-----------------RL 89 (158)
T PRK13198 36 LAETPITFNENK-PVTKVKVRNTGDRPIQ----VGSHFHFFEVNRA----LEFDRAAAYGK-----------------RL 89 (158)
T ss_pred eCCCCeEeCCCC-cEEEEEEEeCCCCceE----eccccchhhcCcc----ccccHhhhcCc-----------------cc
Confidence 334455666664 5688999999999874 3467666632211 22211111111 11
Q ss_pred ecCC--CcccCCCCeEEEEEEE
Q 002714 479 SFPE--GISIQGETPLLWPLWY 498 (889)
Q Consensus 479 ~~p~--~~~L~pGes~~~Plwl 498 (889)
++|. ....+||+++++.|.=
T Consensus 90 dIPAGTAVRFEPG~~k~V~LV~ 111 (158)
T PRK13198 90 NISSTTAIRFEPGDETEVPLIP 111 (158)
T ss_pred ccCCCCeEeeCCCCeeEEEEEE
Confidence 2342 3567899999999864
No 212
>PRK14574 hmsH outer membrane protein; Provisional
Probab=21.03 E-value=6.7e+02 Score=32.25 Aligned_cols=56 Identities=11% Similarity=0.095 Sum_probs=37.7
Q ss_pred HHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 100 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 100 vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
...|..|...|+...|+..|++++...-+. ..+.+.|+..+...++.+.|++.+.+
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n------~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTN------PDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 334678888888888888888888776443 23445566666777777777655433
No 213
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=20.73 E-value=4.1e+02 Score=30.06 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=32.3
Q ss_pred ccccCccEEEEEEEEEecCccccceEEEEecC-CceEEecc
Q 002714 404 ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSH-PRFLSIGN 443 (889)
Q Consensus 404 ~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~-p~~~~~g~ 443 (889)
..-|.||-..+.+.++|.++..++.|++.+-. .+.+.|.+
T Consensus 204 EiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~Lfs~ 244 (402)
T KOG3865|consen 204 EIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICLFST 244 (402)
T ss_pred hheecCCceeEEEEEecCCcceeeeeEEEeEeeceEEEEec
Confidence 35689999999999999999999999988774 44444433
No 214
>PRK13205 ureB urease subunit beta; Reviewed
Probab=20.70 E-value=2.3e+02 Score=28.65 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=40.0
Q ss_pred CccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCC
Q 002714 403 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 482 (889)
Q Consensus 403 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~ 482 (889)
+..+..|. ..++|+++|.|..||. +-||-+|+-.... +.|-...++.. =+++|.
T Consensus 12 ~IelN~GR-~~i~L~V~NtGDRPIQ----VGSHyHF~EvN~A----L~FDR~~A~G~-----------------RLdIPA 65 (162)
T PRK13205 12 SLTGNVGR-EAKTIEIINTGDRPVQ----IGSHFHFAEVNPS----ISFDRSEGYGF-----------------RLDIPS 65 (162)
T ss_pred CeEeCCCC-cEEEEEEEeCCCCceE----eccccchhhcCcc----ccccHHHhcCc-----------------ccccCC
Confidence 44455553 4589999999999874 4567666632211 22221111111 112442
Q ss_pred --CcccCCCCeEEEEEEE
Q 002714 483 --GISIQGETPLLWPLWY 498 (889)
Q Consensus 483 --~~~L~pGes~~~Plwl 498 (889)
....+||+++++.|-=
T Consensus 66 GTAVRFEPGe~ktV~LV~ 83 (162)
T PRK13205 66 GTAVRLEPGDARTVNLVA 83 (162)
T ss_pred CCeEeECCCCeEEEEEEE
Confidence 3567899999998863
No 215
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=20.69 E-value=1.8e+02 Score=26.81 Aligned_cols=76 Identities=9% Similarity=0.022 Sum_probs=47.8
Q ss_pred CCccccCccEEEEEEEEEecCccccceEEEEecCCceEEeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecC
Q 002714 402 LPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFP 481 (889)
Q Consensus 402 lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p 481 (889)
++..+.-|+-..+.++|+|.+..+++++.+...-- -..++.-.. .+. ....
T Consensus 7 ~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~--~v~ytG~~~-----~~~------------------~~~~---- 57 (107)
T PF00927_consen 7 LPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAF--TVEYTGLTR-----DQF------------------KKEK---- 57 (107)
T ss_dssp EESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEE--EEECTTTEE-----EEE------------------EEEE----
T ss_pred ECCCccCCCCEEEEEEEEeCCcCccccceeEEEEE--EEEECCccc-----ccE------------------eEEE----
Confidence 44556799999999999999999999988886542 112222100 000 0001
Q ss_pred CCcccCCCCeEEEEEEEEecCCcee
Q 002714 482 EGISIQGETPLLWPLWYRAAVPGKI 506 (889)
Q Consensus 482 ~~~~L~pGes~~~Plwlra~~~G~~ 506 (889)
....|.||++.++.+-+.....|..
T Consensus 58 ~~~~l~p~~~~~~~~~i~p~~yG~~ 82 (107)
T PF00927_consen 58 FEVTLKPGETKSVEVTITPSQYGPK 82 (107)
T ss_dssp EEEEE-TTEEEEEEEEE-HHSHEEE
T ss_pred cceeeCCCCEEEEEEEEEceeEecc
Confidence 1456899999999999998877763
No 216
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=20.51 E-value=1.3e+02 Score=26.55 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=26.9
Q ss_pred HHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcC
Q 002714 96 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG 128 (889)
Q Consensus 96 Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~ 128 (889)
|.-+|--|-....+|.+..|++||.+|+..+..
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 445566667788999999999999999987654
No 217
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=20.31 E-value=1.6e+02 Score=36.94 Aligned_cols=56 Identities=20% Similarity=0.115 Sum_probs=49.2
Q ss_pred HHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHHHHHHHH
Q 002714 100 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 100 vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~Av~h~l~ 161 (889)
.+||+-|.+.++...|.-|+.+|..+|--..| +.+..|+.....|++.+|...|+.
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~------~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLSAS------VYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhhHH------HHHHhhHHHHHHHhhHHHHHHHHH
Confidence 38999999999999999999999999855544 778999999999999999877765
No 218
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=20.28 E-value=8.7e+02 Score=27.97 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=14.5
Q ss_pred HHHHHhhHhHHhCCCcHHHHHHHHHHHhhh
Q 002714 97 FHLVLSGDRYKKCDQINHAIRTYRSAVSVY 126 (889)
Q Consensus 97 f~~vLAg~ry~k~g~~~~A~rcy~~A~~vY 126 (889)
+..++||..+...|....|.+-|.+|.+.+
T Consensus 119 ~~~llaA~aa~~~g~~~~A~~~l~~a~~~~ 148 (409)
T TIGR00540 119 LNLIKAAEAAQQRGDEARANQHLEEAAELA 148 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 444445555555555555555555544433
Done!