Query 002714
Match_columns 889
No_of_seqs 189 out of 241
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 21:38:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002714.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_95-98//hhsearch_pdb/002714hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q3z_A Transglutaminase 2; tra 1.0 1 1 38.6 6.9 27 407-433 598-624 (687)
2 1g0d_A Protein-glutamine gamma 1.0 1 1 38.5 10.0 173 243-513 484-666 (695)
3 2ifu_A Gamma-SNAP; membrane fu 1.0 1 1 38.1 15.7 124 37-161 34-180 (307)
4 2xzz_A Protein-glutamine gamma 1.0 1 1 36.8 3.7 69 239-344 14-82 (102)
5 1vjj_A Protein-glutamine gluta 1.0 1 1 35.9 7.6 18 243-260 33-50 (692)
6 4a1s_A PINS, partner of inscut 1.0 1 1 35.6 11.3 64 98-161 225-288 (411)
7 1ex0_A Coagulation factor XIII 1.0 1 1 35.4 10.7 34 239-274 73-107 (731)
8 2ifu_A Gamma-SNAP; membrane fu 1.0 1 1 34.5 11.5 142 19-163 58-222 (307)
9 3ulq_A Response regulator aspa 1.0 1 1 34.3 12.9 117 45-161 109-249 (383)
10 1qqe_A Vesicular transport pro 1.0 1 1 33.9 15.9 143 15-161 35-183 (292)
No 1
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=1.00 E-value=1 Score=38.56 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=13.2
Q ss_pred CCCCEEEEEEEEEECCCCCCCEEEEEE
Q ss_conf 184189999999933754442079996
Q 002714 407 YAGDLRHLVLELKNQSDFSVKNLKMKV 433 (889)
Q Consensus 407 l~GEi~~~~l~L~N~G~~pl~~l~i~~ 433 (889)
-.|+-..+.+.|+|.=..||++..+..
T Consensus 598 ~v~~~~~v~v~f~NPL~~~L~~c~~~v 624 (687)
T 2q3z_A 598 KQKRKLVAEVSLQNPLPVALEGCTFTV 624 (687)
T ss_dssp SSSSCEEEEEEEECCSSSCBCSEEEEE
T ss_pred CCCCEEEEEEEEECCCCCCCCCEEEEE
T ss_conf 349769999999899987215569999
No 2
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=1.00 E-value=1 Score=38.53 Aligned_cols=173 Identities=12% Similarity=0.101 Sum_probs=104.2
Q ss_pred CCCEEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 18749999998586556377556799999702797533579987422234311112233356688998303566658986
Q 002714 243 AGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLG 322 (889)
Q Consensus 243 vgEpi~V~V~L~NPL~ipI~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i~L~ 322 (889)
.|++|.|.+.++|.=.-+-.+ ++.|..+-..=++... . .+.....+++|+
T Consensus 484 ~G~df~v~v~~~N~s~~~~~v-~~~l~a~~v~YtG~~~------------------~-----------~~~~~~~~~~L~ 533 (695)
T 1g0d_A 484 FGTDFDVIVEVKNEGGRDAHA-QLTMLAMAVTYNSLRR------------------G-----------ECQRKTISVTVP 533 (695)
T ss_dssp TTCCEEEEEEEEECSSSCEEE-EEEEEEEEECTTCBCC------------------C-----------CCCEEEEEEEEC
T ss_pred CCCCEEEEEEEEECCCCCEEE-EEEEEEEEEEECCCCC------------------C-----------CEEEEEEEEEEC
T ss_conf 899979999999799987789-9999999996579404------------------7-----------406702789988
Q ss_pred CCCEEEEEEEEEECC-------EEEEEEEEEEEEECCC---EEEEEEEECCHHHHHCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 873599999998673-------0689999899996354---015897101202211002454456899985289996398
Q 002714 323 GAETILVQLMVTPKV-------EGILKIVGVRWRLSGS---LVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSL 392 (889)
Q Consensus 323 p~Etk~v~L~i~P~~-------~G~L~I~Gv~~~L~~~---v~g~~~F~i~g~rl~~tK~kr~~~~~pd~rL~~~V~~~~ 392 (889)
|.+++.+.+.+.+.. .+.++|..+ .+.... +...++|.+ ..
T Consensus 534 p~~~~~v~~~i~y~~Y~~~L~d~~~i~~~a~-~~v~et~~~~~~~~di~l----------------------------~~ 584 (695)
T 1g0d_A 534 AHKAHKEVMRLHYDDYVRCVSEHHLIRVKAL-LDAPGENGPIMTVANIPL----------------------------ST 584 (695)
T ss_dssp TTEEEEEEEEECHHHHTTTCCTTCEEEEEEE-EECCC---EEEEEEEEEC----------------------------BC
T ss_pred CCCEEEEEEEECHHHHHHHCCCCCEEEEEEE-EEECCCCEEEEEEEEEEE----------------------------CC
T ss_conf 9863899999889997442446776999999-998888759999889997----------------------------19
Q ss_pred CEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 63999991478320184189999999933754442079996587039963588888762143311233322224788888
Q 002714 393 PKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNK 472 (889)
Q Consensus 393 P~L~v~~~~~P~~ll~GEi~~~~l~L~N~G~~pl~~l~i~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~ 472 (889)
|.|.+. ++...-.|+-..+.++|+|.=..|+++..+....|.....
T Consensus 585 P~l~I~---v~g~~~v~~~l~a~vsf~NPL~~~L~~c~~~vEG~GL~~~------------------------------- 630 (695)
T 1g0d_A 585 PELLVQ---VPGKAVVWEPLTAYVSFTNPLPVPLKGGVFTLEGAGLLSA------------------------------- 630 (695)
T ss_dssp CCCEEE---CCSCEETTCCEEEEEEEECCSSSCEESCEEEEEETTTEEE-------------------------------
T ss_pred CCEEEE---ECCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCC-------------------------------
T ss_conf 987999---6897313975899999979998721566999988998852-------------------------------
Q ss_pred CCCEEEECCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf 99505505997645899819997999926886159999999
Q 002714 473 MPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIY 513 (889)
Q Consensus 473 ~~~~v~~~p~~~~L~pGes~~iplwlra~~~G~~~l~~Lfy 513 (889)
..+.++ ..+.||++.++.+-+.+...|.+.|..-|.
T Consensus 631 ---~~~~~~--~~v~Pg~~~~~~~~~~P~~~G~r~L~a~f~ 666 (695)
T 1g0d_A 631 ---TQIHVN--GAVAPSGKVSVKLSFSPMRTGVRKLLVDFD 666 (695)
T ss_dssp ---EEEECS--SEECTTCEEEEEEEECCSSCEEEEEEEEEE
T ss_pred ---EEEECC--CCCCCCCEEEEEEEEECCCCCCEEEEEEEE
T ss_conf ---478268--973999889999999727742338999988
No 3
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=1.00 E-value=1 Score=38.12 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHCC------------------CCCCCH
Q ss_conf 46899999999997237779999999888186-----6225699899998634306------------------999530
Q 002714 37 NATRCGLWWVEMLKARHQYKDAATVYFRICGE-----EPLHSAVMLEQASYCYLLS------------------KPPMLH 93 (889)
Q Consensus 37 ~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~-----~~l~sAlllEqaA~c~l~~------------------~~~~~R 93 (889)
.|+.+.--.+.+++..+.+++|...+.++... +....+-.+.+++.+|... .....+
T Consensus 34 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~ 113 (307)
T 2ifu_A 34 SAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 99999999999999868889999999999999998699799999999999999867999999999999999999859989
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 45878998657687389927899999999966237986322101556689899991899999999998
Q 002714 94 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 94 K~af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~i~dhi~~tlgr~~~~lg~~~~Av~h~l~ 161 (889)
..+..+.-.|.-|.+ |....|+.+|.+|+.++...+-.......+..+|..+..+|+++.|+.+|.+
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999999873-8999999999999999984798547999999999999981889999999999
No 4
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=36.81 Aligned_cols=69 Identities=26% Similarity=0.348 Sum_probs=47.8
Q ss_pred CEEECCCEEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 32651874999999858655637755679999970279753357998742223431111223335668899830356665
Q 002714 239 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 318 (889)
Q Consensus 239 ~~~vvgEpi~V~V~L~NPL~ipI~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 318 (889)
..+++|+++.++|.|+|||.+||. |..+..++..- ..+ ....-
T Consensus 14 g~~~v~~~l~v~vsf~NPL~~~L~--~c~~~vEG~GL---------------------~~~--------------~~~~~ 56 (102)
T 2xzz_A 14 GAAVVGQECEVQIVFKNPLPVTLT--NVVFRLEGSGL---------------------QRP--------------KILNV 56 (102)
T ss_dssp SCCCSSSCEEEEEEEECCSSSCBC--SEEEEEEETTT---------------------EEE--------------EEEEE
T ss_pred CCCCCCCEEEEEEEEECCCCCCCC--CEEEEEECCCC---------------------CCC--------------EEEEC
T ss_conf 982619739999999899997304--78999988987---------------------832--------------17886
Q ss_pred EEECCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 89868735999999986730689999
Q 002714 319 ISLGGAETILVQLMVTPKVEGILKIV 344 (889)
Q Consensus 319 i~L~p~Etk~v~L~i~P~~~G~L~I~ 344 (889)
=.++|+++-.+.+.++|.+.|.-++.
T Consensus 57 ~~v~pg~~~~~~~~~~P~~~G~~~L~ 82 (102)
T 2xzz_A 57 GDIGGNETVTLRQSFVPVRPGPRQLI 82 (102)
T ss_dssp CCBCTTCEEEEEEEECCCSCSSCCCE
T ss_pred CCCCCCCEEEEEEEEECCCCCCEEEE
T ss_conf 86898998999999961763040799
No 5
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=1.00 E-value=1 Score=35.92 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=8.6
Q ss_pred CCCEEEEEEEEECCCCCC
Q ss_conf 187499999985865563
Q 002714 243 AGEPVKVDIEFKNPLQIP 260 (889)
Q Consensus 243 vgEpi~V~V~L~NPL~ip 260 (889)
-|.||.+.+.|.-|++-.
T Consensus 33 RGQ~F~i~l~f~r~~~~~ 50 (692)
T 1vjj_A 33 RGQNFQVLMIMNKGLGSN 50 (692)
T ss_dssp TTSCEEEEEEESSCCCTT
T ss_pred CCCCEEEEEEECCCCCCC
T ss_conf 998489999979999977
No 6
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=35.56 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 8998657687389927899999999966237986322101556689899991899999999998
Q 002714 98 HLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 98 ~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~i~dhi~~tlgr~~~~lg~~~~Av~h~l~ 161 (889)
-+..-|..|...|....|+.+|.+|+.++...+.....-.+++.+|..+..+|+++.|+.++..
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999858829999999999999985199678999999999999987689999999999
No 7
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=1.00 E-value=1 Score=35.44 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=24.2
Q ss_pred CEEE-CCCEEEEEEEEECCCCCCEEEEEEEEEEEEEC
Q ss_conf 3265-18749999998586556377556799999702
Q 002714 239 NICV-AGEPVKVDIEFKNPLQIPISISNISLICELST 274 (889)
Q Consensus 239 ~~~v-vgEpi~V~V~L~NPL~ipI~ls~I~Ll~~~~~ 274 (889)
...| -|.||.+.+.|.-|++-.- ..|+|..+..+
T Consensus 73 ~LIVRRGQ~F~i~l~f~r~~~~~~--d~l~l~~~tGp 107 (731)
T 1ex0_A 73 KLIVRRGQSFYVQIDFSRPYDPRR--DLFRVEYVIGR 107 (731)
T ss_dssp SEEEETTSEEEEEEEESSCCCTTT--CCEEEEEECBS
T ss_pred CEEECCCCCEEEEEEECCCCCCCC--CEEEEEEEECC
T ss_conf 657859984899999678888777--57999999489
No 8
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=1.00 E-value=1 Score=34.55 Aligned_cols=142 Identities=12% Similarity=-0.100 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC----CC-HHHHHHHHHHHHHHHCCCCC---
Q ss_conf 99999999998189821446899999999997237779999999888186----62-25699899998634306999---
Q 002714 19 CMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGE----EP-LHSAVMLEQASYCYLLSKPP--- 90 (889)
Q Consensus 19 ~le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~----~~-l~sAlllEqaA~c~l~~~~~--- 90 (889)
+++.|+..+...+. ...+.++..-.+.+++..|.+++|...+-++... +. ...+-.+...|.+|.. ...
T Consensus 58 ~~~~al~~~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 58 AYLQEAEAHANNRS--LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC-CCHHHH
T ss_conf 99999999998699--799999999999999867999999999999999999859989999999999999873-899999
Q ss_pred ---------------CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHH
Q ss_conf ---------------53045878998657687389927899999999966237986322101556689899991899999
Q 002714 91 ---------------MLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIA 155 (889)
Q Consensus 91 ---------------~~RK~af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~i~dhi~~tlgr~~~~lg~~~~A 155 (889)
..+..+.-+.--|.-|.+.|+..-|+.+|.+|+.++...+.....-...+.+|.....+|+.+.|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99999999999847985479999999999999818899999999999999998678547999999999999973988999
Q ss_pred HHHHHHHC
Q ss_conf 99999842
Q 002714 156 VAHMLEKT 163 (889)
Q Consensus 156 v~h~l~~~ 163 (889)
+.+|.+..
T Consensus 215 ~~~~~~al 222 (307)
T 2ifu_A 215 QKCVRESY 222 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
T ss_conf 99999973
No 9
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=34.30 Aligned_cols=117 Identities=13% Similarity=0.102 Sum_probs=60.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHCC----C-CHHHHHHHHHHHHHHHCCCCC-------------------CCHHHHHHHH
Q ss_conf 999997237779999999888186----6-225699899998634306999-------------------5304587899
Q 002714 45 WVEMLKARHQYKDAATVYFRICGE----E-PLHSAVMLEQASYCYLLSKPP-------------------MLHKYGFHLV 100 (889)
Q Consensus 45 ~~e~l~~~~~~~~Aa~~l~r~~~~----~-~l~sAlllEqaA~c~l~~~~~-------------------~~RK~af~~v 100 (889)
.+.++...|.+++|...+-++... . +...|..+-..|.+|...... .....+.-+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999986699999999999999986099899999999999999998088799999999999999867664377998999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 8657687389927899999999966237986322101556689899991899999999998
Q 002714 101 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 101 LAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~i~dhi~~tlgr~~~~lg~~~~Av~h~l~ 161 (889)
.-|..|...|+...|+.+|..|+.++...+-....-..++.+|..+..+|+++.|+.++..
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999854899999999999999987498278999999999999877999999999999
No 10
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=33.88 Aligned_cols=143 Identities=16% Similarity=0.029 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC----CCCHHHH-HHHHHHHHHHHCCCC
Q ss_conf 89999999999999818982144689999999999723777999999988818----6622569-989999863430699
Q 002714 15 EAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICG----EEPLHSA-VMLEQASYCYLLSKP 89 (889)
Q Consensus 15 ~~~~~le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~----~~~l~sA-lllEqaA~c~l~~~~ 89 (889)
++..+++.|...|...+.. .-|+.+..-..++....+....++..+..+.. .+....| -.+++|-..+. ..
T Consensus 35 ~A~~~~~~a~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~--~~ 110 (292)
T 1qqe_A 35 EAADLCVQAATIYRLRKEL--NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT--HR 110 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCT--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HT
T ss_pred HHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HC
T ss_conf 9999999999999986899--9999999999999998199999999999999999877999999999999999999--86
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 95304587899865768738-9927899999999966237986322101556689899991899999999998
Q 002714 90 PMLHKYGFHLVLSGDRYKKC-DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 161 (889)
Q Consensus 90 ~~~RK~af~~vLAg~ry~k~-g~~~~A~rcy~~A~~vY~~~~W~~i~dhi~~tlgr~~~~lg~~~~Av~h~l~ 161 (889)
+..+..+..+.-.|..|... |....|+.+|.+|+.++...+.....-..+..+|..+..+|+++.|+.+|..
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9889999999999999998624799999999999999884898678999999999999980889999999999
Done!