Query 002715
Match_columns 889
No_of_seqs 385 out of 2865
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:40:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452 RNA-binding translatio 100.0 1E-273 2E-278 2219.7 50.8 877 4-885 6-892 (892)
2 PLN00070 aconitate hydratase 100.0 9E-264 2E-268 2296.4 77.2 883 4-887 42-936 (936)
3 PTZ00092 aconitate hydratase-l 100.0 1E-260 3E-265 2267.4 76.8 873 5-886 14-897 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 1E-258 3E-263 2246.5 73.7 853 22-885 2-876 (876)
5 PRK12881 acnA aconitate hydrat 100.0 3E-257 7E-262 2241.1 75.8 864 5-886 4-889 (889)
6 PRK09277 aconitate hydratase; 100.0 1E-256 2E-261 2232.3 77.7 866 1-886 1-887 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 4E-252 9E-257 2183.7 72.4 823 22-886 12-858 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 3E-251 6E-256 2149.8 64.4 840 11-886 6-861 (861)
9 TIGR01340 aconitase_mito aconi 100.0 6E-179 1E-183 1568.9 59.0 697 49-880 19-745 (745)
10 PRK07229 aconitate hydratase; 100.0 2E-164 5E-169 1438.4 54.0 637 49-885 2-645 (646)
11 TIGR01342 acon_putative aconit 100.0 3E-162 7E-167 1417.5 54.1 643 51-886 1-654 (658)
12 TIGR00139 h_aconitase homoacon 100.0 3E-145 6E-150 1272.4 52.1 662 50-884 2-712 (712)
13 PRK11413 putative hydratase; P 100.0 3E-143 7E-148 1260.4 50.7 684 49-882 34-750 (751)
14 KOG0453 Aconitase/homoaconitas 100.0 9E-137 2E-141 1143.4 45.2 704 49-882 58-774 (778)
15 cd01586 AcnA_IRP Aconitase A c 100.0 9E-131 2E-135 1085.6 36.7 400 75-559 1-404 (404)
16 TIGR00170 leuC 3-isopropylmala 100.0 8E-122 2E-126 1040.5 41.0 453 49-560 2-460 (465)
17 PRK12466 isopropylmalate isome 100.0 1E-121 3E-126 1040.2 41.5 453 49-560 3-462 (471)
18 PRK05478 isopropylmalate isome 100.0 1E-120 2E-125 1032.6 40.8 453 49-560 2-460 (466)
19 PF00330 Aconitase: Aconitase 100.0 1E-121 3E-126 1043.2 32.0 457 51-557 1-465 (465)
20 cd01584 AcnA_Mitochondrial Aco 100.0 5E-119 1E-123 1002.2 36.7 409 75-559 1-412 (412)
21 cd01583 IPMI 3-isopropylmalate 100.0 2E-115 5E-120 967.2 37.0 380 75-559 1-382 (382)
22 TIGR01343 hacA_fam homoaconita 100.0 5E-115 1E-119 970.0 39.2 405 51-560 1-409 (412)
23 TIGR02086 IPMI_arch 3-isopropy 100.0 2E-114 4E-119 966.1 38.6 405 50-560 1-408 (412)
24 PRK00402 3-isopropylmalate deh 100.0 3E-114 6E-119 965.6 40.0 407 49-560 2-412 (418)
25 cd01585 AcnA_Bact Aconitase ca 100.0 4E-114 9E-119 954.5 36.0 379 74-559 1-380 (380)
26 TIGR02083 LEU2 3-isopropylmala 100.0 2E-113 3E-118 957.7 40.1 409 50-560 1-414 (419)
27 COG0065 LeuC 3-isopropylmalate 100.0 3E-112 7E-117 920.4 35.9 410 50-560 3-417 (423)
28 cd01581 AcnB Aconitate hydrata 100.0 1E-105 3E-110 897.7 37.6 403 52-559 1-436 (436)
29 cd01582 Homoaconitase Homoacon 100.0 6E-105 1E-109 875.1 33.6 361 75-559 1-363 (363)
30 cd01351 Aconitase Aconitase ca 100.0 2E-100 5E-105 853.9 35.9 388 75-559 1-389 (389)
31 PRK09238 bifunctional aconitat 100.0 3.1E-97 7E-102 871.3 39.6 410 47-560 368-810 (835)
32 TIGR00117 acnB aconitate hydra 100.0 6.2E-96 1E-100 857.6 42.1 408 48-560 370-810 (844)
33 PLN00094 aconitate hydratase 2 100.0 6.4E-94 1.4E-98 837.9 38.9 409 48-560 442-884 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 5.5E-68 1.2E-72 521.1 12.9 170 663-832 1-170 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 2.3E-45 5E-50 410.3 25.0 418 49-594 372-822 (852)
36 KOG0454 3-isopropylmalate dehy 100.0 2.2E-43 4.7E-48 384.2 18.2 398 331-835 16-421 (502)
37 cd01578 AcnA_Mitochon_Swivel M 100.0 7.8E-40 1.7E-44 318.3 9.4 141 663-832 1-141 (149)
38 PRK00439 leuD 3-isopropylmalat 100.0 1E-35 2.2E-40 297.5 11.9 156 661-884 4-159 (163)
39 PRK14023 homoaconitate hydrata 100.0 1.5E-35 3.2E-40 296.7 11.5 157 661-886 4-160 (166)
40 TIGR02084 leud 3-isopropylmala 100.0 1.7E-35 3.6E-40 293.4 10.6 154 661-882 3-156 (156)
41 TIGR02087 LEUD_arch 3-isopropy 100.0 1.7E-35 3.6E-40 293.0 10.4 152 661-883 3-154 (154)
42 COG0066 LeuD 3-isopropylmalate 100.0 2.1E-35 4.6E-40 296.0 10.0 166 660-885 10-180 (191)
43 PLN00072 3-isopropylmalate iso 100.0 1.3E-33 2.8E-38 295.2 11.8 172 654-883 68-240 (246)
44 PF00694 Aconitase_C: Aconitas 100.0 1.1E-34 2.4E-39 279.4 2.7 128 687-814 3-130 (131)
45 cd01579 AcnA_Bact_Swivel Bacte 100.0 4E-32 8.7E-37 259.1 6.0 121 663-833 1-121 (121)
46 TIGR00171 leuD 3-isopropylmala 100.0 1.5E-31 3.3E-36 272.1 8.2 166 655-874 7-174 (188)
47 PRK01641 leuD isopropylmalate 100.0 8E-31 1.7E-35 269.4 9.6 163 655-874 7-172 (200)
48 cd01577 IPMI_Swivel Aconatase- 100.0 3.3E-29 7.2E-34 227.2 5.6 73 760-833 19-91 (91)
49 cd00404 Aconitase_swivel Aconi 100.0 6.2E-29 1.3E-33 223.9 6.3 71 760-832 17-87 (88)
50 PRK09238 bifunctional aconitat 99.9 3.8E-26 8.3E-31 270.9 12.6 165 653-885 164-342 (835)
51 cd01674 Homoaconitase_Swivel H 99.9 8.4E-27 1.8E-31 221.7 3.4 56 759-814 46-101 (129)
52 KOG0454 3-isopropylmalate dehy 99.9 4.8E-26 1E-30 249.1 5.1 421 48-558 65-498 (502)
53 cd01576 AcnB_Swivel Aconitase 99.9 8.6E-24 1.9E-28 203.4 6.4 67 760-832 52-130 (131)
54 TIGR00117 acnB aconitate hydra 99.9 3E-23 6.4E-28 245.8 12.0 165 653-885 165-343 (844)
55 PRK14812 hypothetical protein; 99.8 5.3E-19 1.2E-23 168.1 7.4 91 770-874 2-92 (119)
56 PLN00094 aconitate hydratase 2 99.8 1.7E-18 3.7E-23 205.4 13.3 119 748-885 283-415 (938)
57 PF06434 Aconitase_2_N: Aconit 98.3 1.1E-06 2.3E-11 89.8 7.8 120 748-886 44-176 (204)
58 PF04412 DUF521: Protein of un 95.8 0.026 5.7E-07 65.0 8.1 69 420-496 288-356 (400)
59 COG1049 AcnB Aconitase B [Ener 95.6 0.03 6.5E-07 66.0 7.9 118 749-883 213-342 (852)
60 COG1679 Predicted aconitase [G 93.2 0.22 4.7E-06 56.5 7.3 69 420-496 288-356 (403)
61 cd01355 AcnX Putative Aconitas 90.9 0.53 1.1E-05 54.3 7.0 69 422-501 279-347 (389)
62 TIGR00829 FRU PTS system, fruc 27.1 52 0.0011 30.1 2.6 31 426-457 2-32 (85)
63 COG1445 FrwB Phosphotransferas 27.0 72 0.0016 31.5 3.6 33 424-457 4-36 (122)
64 PF07972 Flavodoxin_NdrI: NrdI 24.5 65 0.0014 31.7 2.9 42 489-531 41-85 (122)
65 PRK03600 nrdI ribonucleotide r 23.7 71 0.0015 31.7 3.0 28 504-531 56-86 (134)
66 COG0311 PDX2 Predicted glutami 22.5 90 0.002 33.0 3.5 74 459-535 38-113 (194)
No 1
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-273 Score=2219.69 Aligned_cols=877 Identities=73% Similarity=1.201 Sum_probs=857.3
Q ss_pred CCcchhcccceecCCCcceeEEEeCCCCCC--Cch--------hhhhcccCCccccHHHHHHHHhhhcCCCCceeEeecc
Q 002715 4 ENPFKSILKTLQRPDGGEFGKYYSLPALND--PRI--------ESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKP 73 (889)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~l--------E~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~p 73 (889)
.++|....++|+..+. .++||+|++|.. ++| |+++||||++.++++++|+||.|...+.+..||+|+|
T Consensus 6 ~~~f~~~~~~l~~~~~--~~kyf~l~~l~~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~~t~~k~vEvpFkP 83 (892)
T KOG0452|consen 6 ENPFAQLIETLPKPGG--VYKYFDLPKLNSRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWKNTQKKQVEVPFKP 83 (892)
T ss_pred cccHHHHHhccCCCCC--cceeeeccccccccccCchhHHHHHHHHHhcCccceeeHHHHHHHhCccccCccceeecccc
Confidence 3678766678887664 799999999973 222 9999999999999999999999998777778999999
Q ss_pred ceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccccHHHHHhhhHHHHHHhhhhhhhhhhc
Q 002715 74 ARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWG 153 (889)
Q Consensus 74 drvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~ 153 (889)
+||++|||||+||++|||+||||++++|+||+||||.+|+|||||||||+|+.++++|+++|+..||+||+|||.||||+
T Consensus 84 ARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlKWg 163 (892)
T KOG0452|consen 84 ARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLKWG 163 (892)
T ss_pred ceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCceeccccccccceeeecCCCcccCCeeeecCCCCcccCcccceeccCCHHHHHHHHcCCceEeecC
Q 002715 154 SNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 233 (889)
Q Consensus 154 ~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~~~~~~vP 233 (889)
.++|+|+.++|||+||+||||||||||||+.+++++|||++|||||||||++|||++||||||+|+|++|+|||++|.+|
T Consensus 164 s~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmvlP 243 (892)
T KOG0452|consen 164 SRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLP 243 (892)
T ss_pred hHhhcceEEeCCCCceeEEeehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchheecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEEeCChHHHHHH
Q 002715 234 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 313 (889)
Q Consensus 234 evv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~YL 313 (889)
+|||++|+|+|.++||++||+|+||++||+.|++||||||||+|+++||+.||+||+||+||||||.||||+|+.|++||
T Consensus 244 ~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~yl 323 (892)
T KOG0452|consen 244 EVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQYL 323 (892)
T ss_pred cceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhcccccCC
Q 002715 314 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 393 (889)
Q Consensus 314 ~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~ 393 (889)
+.|||+++.++.+++|+|+.++|++...++.++.|++++++||++|+|+|+||+||+|+++|++++.+|..||++++++|
T Consensus 324 ~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgFK 403 (892)
T KOG0452|consen 324 KQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGFK 403 (892)
T ss_pred HHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCccccc
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred CccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHH
Q 002715 394 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 473 (889)
Q Consensus 394 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~ 473 (889)
|+.++++.+++...+.|+|++++|.||+|+||+|+||||+|||++|++|+||||||+++|++|+||+||+++|||.+|+.
T Consensus 404 gFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt~ 483 (892)
T KOG0452|consen 404 GFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVTK 483 (892)
T ss_pred ccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhhh
Confidence 99999888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHH
Q 002715 474 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 553 (889)
Q Consensus 474 ~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~ 553 (889)
||.++|++++|+++||.|+||||+|||||||+|.+++..+|.+|++++++|+|||||||||+||.+++||||||++|+||
T Consensus 484 YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvvaY 563 (892)
T KOG0452|consen 484 YLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVAY 563 (892)
T ss_pred hhhhccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccccccCCCCCcccCCCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCC
Q 002715 554 ALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKS 633 (889)
Q Consensus 554 AlaG~i~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~s 633 (889)
||||++++||++||||++++|+.|||+||||+++||+++++++|.|+||++.|+.|..|++.|+.|++|++.+|+||++|
T Consensus 564 aiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~~S 643 (892)
T KOG0452|consen 564 AIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPKS 643 (892)
T ss_pred hhcceeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhc
Q 002715 634 TYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMA 713 (889)
Q Consensus 634 tyi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~ 713 (889)
|||++||||++|+.+++.+++|++|+||+.|||+||||||||||+|.++||||+||.+||++|+|||||||||||++||.
T Consensus 644 TYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~vMa 723 (892)
T KOG0452|consen 644 TYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVMA 723 (892)
T ss_pred ceecCCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhhhcCCCCCCceeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecc
Q 002715 714 RGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKS 793 (889)
Q Consensus 714 rg~Fan~r~~n~l~~g~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~S 793 (889)
||||||||+.|+|+ ++.||.|.|+|+||.+.|||||++|+++|.|+||+||+.||+|||||||||+|.+||||||||||
T Consensus 724 RGTFANIrlvNkl~-~k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAViaeS 802 (892)
T KOG0452|consen 724 RGTFANIRLVNKLL-SKVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIAES 802 (892)
T ss_pred cccchhhHHHHHHh-cccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHHHH
Confidence 99999999999998 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhhccCcccceecCCccchhhccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCEEEEEEecCCCHHHHHHHHh
Q 002715 794 FERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDH 873 (889)
Q Consensus 794 FaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~a 873 (889)
||||||+||++|||+||+|..++++++|+|+|.|.++|.+++. .|+||+.|+|+..+|+.|.+++|+||+.|+.|+++
T Consensus 803 ~ErIHrsnLvGmGIiPl~f~~Ge~AdtLgLtG~E~yti~lP~~--~lkPgq~i~v~~dtGk~F~~~~rFdteVeltyy~~ 880 (892)
T KOG0452|consen 803 YERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLPEN--ILKPGQDITVTTDTGKVFVCTLRFDTEVELTYYKN 880 (892)
T ss_pred HHHHHhhccccceeeeeeecCCCChhhcCcccceeEEEECCcc--cCCCCceEEEEecCCcEEEEEEEecceEEEEEEec
Confidence 9999999999999999999999999999999999999999984 39999999999899999999999999999999999
Q ss_pred cCHHHHHHHHHh
Q 002715 874 GGILQYVIRNLI 885 (889)
Q Consensus 874 GGiL~yv~~~~~ 885 (889)
||||||+.|++.
T Consensus 881 GGiL~y~iRk~~ 892 (892)
T KOG0452|consen 881 GGILNYMIRKLS 892 (892)
T ss_pred CCcHHHHHhhcC
Confidence 999999999863
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=9.4e-264 Score=2296.41 Aligned_cols=883 Identities=90% Similarity=1.421 Sum_probs=840.6
Q ss_pred CCcchhcccceecC-CCcceeEEEeCCCCC--C-Cch--------hhhhcccCCccccHHHHHHHHhhhcCCCCceeEee
Q 002715 4 ENPFKSILKTLQRP-DGGEFGKYYSLPALN--D-PRI--------ESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPF 71 (889)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~--~-~~l--------E~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~~ 71 (889)
.++|....++|+++ ++ ..|+||+|.+++ . +|| ||+||||||..++++++++|++|......+.||+|
T Consensus 42 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~lP~s~rillE~~lR~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f 120 (936)
T PLN00070 42 ENPFKGILTSLPKPGGG-EFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVEIPF 120 (936)
T ss_pred cCchhhhhheeeecCCC-ceEEEEEhhhcccCChhhCCcHHHHHHHHHhhhcCCccCCHHHHHHHHhccccCCCCceecc
Confidence 36664323678887 43 239999999985 2 343 99999999999999999999999876556679999
Q ss_pred ccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccccHHHHHhhhHHHHHHhhhhhhhhh
Q 002715 72 KPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLK 151 (889)
Q Consensus 72 ~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~ 151 (889)
+|+||+||||||+|+++||||||++++++|+||++|||.+||+||||||||+|++++++|+.+|+.+||+||.|||.|||
T Consensus 121 ~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~flk 200 (936)
T PLN00070 121 KPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLK 200 (936)
T ss_pred CCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccCCCCceeccccccccceeeecCCCcccCCeeeecCCCCcccCcccceeccCCHHHHHHHHcCCceEee
Q 002715 152 WGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 231 (889)
Q Consensus 152 ~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~~~~~~ 231 (889)
|++++|+||+|+|||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||+
T Consensus 201 w~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~~~ 280 (936)
T PLN00070 201 WGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 280 (936)
T ss_pred hhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEEee
Confidence 99999999999999999999999999999999768999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEEeCChHHHH
Q 002715 232 LPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQ 311 (889)
Q Consensus 232 vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~ 311 (889)
+||||||+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++
T Consensus 281 vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T~~ 360 (936)
T PLN00070 281 LPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQ 360 (936)
T ss_pred CCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhccccc
Q 002715 312 YLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVG 391 (889)
Q Consensus 312 YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~ 391 (889)
||+.|||++++++++++|+|+|+||+++..+|++|.|+++++||||+|+|+||||++|||++||++++++|.+++..+++
T Consensus 361 YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~ 440 (936)
T PLN00070 361 YLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVG 440 (936)
T ss_pred HHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhccccc
Confidence 99999999999999999999999999766688999999999999999999999999999999999999999988876555
Q ss_pred CCCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHH
Q 002715 392 FKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVV 471 (889)
Q Consensus 392 ~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V 471 (889)
.+|+..+.++.....+++++|++..+++|+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~V 520 (936)
T PLN00070 441 FKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVV 520 (936)
T ss_pred ccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHH
Confidence 44443322222233456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHH
Q 002715 472 TKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 551 (889)
Q Consensus 472 ~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~Va 551 (889)
++||+++||+++|+++||+|++||||+|||||++++++++++|.+|+++++||||+||||+|||||.+++||||||++||
T Consensus 521 ~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~lVa 600 (936)
T PLN00070 521 TKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 600 (936)
T ss_pred HHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccccccCCCCCcccCCCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCC
Q 002715 552 AYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 631 (889)
Q Consensus 552 A~AlaG~i~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~ 631 (889)
||||+|+|++||++||+|+++||++|||+||||+.+||++++.+.++|++|.+.|.+++.+++.|++|++|.+.+|+||+
T Consensus 601 A~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~wd~ 680 (936)
T PLN00070 601 AYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSWDP 680 (936)
T ss_pred HHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCccCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhh
Q 002715 632 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEI 711 (889)
Q Consensus 632 ~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~ev 711 (889)
+||||++||||++++..++++.+|++||||+++|||||||||||||+|+++||||+||+++|+.++||||||||||||||
T Consensus 681 ~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~ev 760 (936)
T PLN00070 681 KSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEI 760 (936)
T ss_pred CcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcchh
Confidence 99999999999999988888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccchhhhhhhcCCCCCCceeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEe
Q 002715 712 MARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIA 791 (889)
Q Consensus 712 m~rg~Fan~r~~n~l~~g~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA 791 (889)
|+||||+|+|++|+|++|++|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++||||||||
T Consensus 761 m~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaVIA 840 (936)
T PLN00070 761 MARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIA 840 (936)
T ss_pred hhceeccchhhhhhhcCCCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHhhhhccCcccceecCCccchhhccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCEEEEEEecCCCHHHHHHH
Q 002715 792 KSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYF 871 (889)
Q Consensus 792 ~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~ 871 (889)
+||+||||+||+|||||||+|.++++++++++.+++.++|+++..+.+++||+.++++..+|++|.+.+++||+.|++||
T Consensus 841 ~SF~rIhrsNli~~GiLPL~f~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r~dt~~E~~~~ 920 (936)
T PLN00070 841 KSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYF 920 (936)
T ss_pred ccHHHHHHhhhhhcCcceEEeCCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeCCCeEEEEEEeCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999876666789999888877788999999999999999999
Q ss_pred HhcCHHHHHHHHHhhh
Q 002715 872 DHGGILQYVIRNLINV 887 (889)
Q Consensus 872 ~aGGiL~yv~~~~~~~ 887 (889)
++|||||||+|+++++
T Consensus 921 ~~GGiL~~v~r~~~~~ 936 (936)
T PLN00070 921 DHGGILPYVIRNLIKQ 936 (936)
T ss_pred HcCCHHHHHHHHHhhC
Confidence 9999999999998753
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=1.3e-260 Score=2267.36 Aligned_cols=873 Identities=71% Similarity=1.161 Sum_probs=829.8
Q ss_pred CcchhcccceecCCCcceeEEEeCCCCC--C-Cch--------hhhhcccCCccccHHHHHHHHhhhcCCCCceeEeecc
Q 002715 5 NPFKSILKTLQRPDGGEFGKYYSLPALN--D-PRI--------ESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKP 73 (889)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~-~~l--------E~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~p 73 (889)
++|....++|+ ++ +.|+||+|+++. . +|| ||+||||||..++++++++|++|......+.||+|+|
T Consensus 14 ~~~~~~~~~l~-~~--~~~~~~~l~~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~~~p 90 (898)
T PTZ00092 14 NPFEKVLKTLK-DG--GSYKYYSLNELHDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEENSKKQIEIPFKP 90 (898)
T ss_pred CchhhhhccCC-CC--CeEEEEEhhhcccCChhhCCchHHHHHHHHhhcCCCcCCCHHHHHHHHcCcccCCCCceeeecc
Confidence 56643225677 55 489999999986 2 343 9999999999999999999999987666678999999
Q ss_pred ceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccccHHHHHhhhHHHHHHhhhhhhhhhhc
Q 002715 74 ARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWG 153 (889)
Q Consensus 74 drvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~ 153 (889)
|||+||||||+|+++|||||||+++++|+||.+|||.+||+|+|||+||+++++..+++..|+.+||+||.|||+||+|+
T Consensus 91 ~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~rN~ery~fl~~~ 170 (898)
T PTZ00092 91 ARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKWG 170 (898)
T ss_pred ceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHHhhHHHhChHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCceeccccccccceeeecCCCcccCCeeeecCCCCcccCcccceeccCCHHHHHHHHcCCceEeecC
Q 002715 154 SNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 233 (889)
Q Consensus 154 ~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~~~~~~vP 233 (889)
+++|+||+|+|||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++|
T Consensus 171 ~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaeaamlgq~~~~~vP 250 (898)
T PTZ00092 171 SKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLP 250 (898)
T ss_pred hhhhcCCcccCCCCceeceechhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHHHHhcCcEEeeCC
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEEeCChHHHHHH
Q 002715 234 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 313 (889)
Q Consensus 234 evv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~YL 313 (889)
|||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||
T Consensus 251 evvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~gifp~De~T~~YL 330 (898)
T PTZ00092 251 EVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYL 330 (898)
T ss_pred CEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhcccccCC
Q 002715 314 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 393 (889)
Q Consensus 314 ~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~ 393 (889)
+.|||++++++++++|.|+|++|++ +|++|.|+++++||||+|+|+||||++|||++||++++++|.+++....+.+
T Consensus 331 ~~tgR~~~~~~lve~y~ka~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~~ 407 (898)
T PTZ00092 331 KQTGRSEEKVELIEKYLKANGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFK 407 (898)
T ss_pred HhcccchHHHHHHHHHHHHHHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCCHHHhhhhhhhhh
Confidence 9999999889999999999999963 5789999999999999999999999999999999999999888766543444
Q ss_pred CccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHH
Q 002715 394 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 473 (889)
Q Consensus 394 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~ 473 (889)
++.+++.+....+++.++|.++.|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++
T Consensus 408 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~v~PGS~~V~~ 487 (898)
T PTZ00092 408 GFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVTK 487 (898)
T ss_pred ccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHH
Confidence 44443222222233445788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHH
Q 002715 474 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 553 (889)
Q Consensus 474 ~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~ 553 (889)
||+++||+++|+++||+|++||||+|||||++++++++++|.+|++++++|||+||||+|||||..++||||||+|||||
T Consensus 488 ~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~ 567 (898)
T PTZ00092 488 YLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 567 (898)
T ss_pred HHHHcCcHHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCceEEcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccccccCCCCCcccCCCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCC
Q 002715 554 ALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKS 633 (889)
Q Consensus 554 AlaG~i~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~s 633 (889)
||+|+|++|+++||||+|++|++|||+||||+.+||++++..+++|++|.+.|.+++.+++.|++|+++.+++|+||++|
T Consensus 568 AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~S 647 (898)
T PTZ00092 568 ALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKS 647 (898)
T ss_pred HHcCceecccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccCCCCCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhc
Q 002715 634 TYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMA 713 (889)
Q Consensus 634 tyi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~ 713 (889)
|||++||||++++.++++..+|++||||+++|||||||||||||+|+++||||+||+++|+.++|||||||||||||||+
T Consensus 648 tyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~~vm~ 727 (898)
T PTZ00092 648 TYIHNPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDEVMV 727 (898)
T ss_pred CcccCCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCchhhc
Confidence 99999999999998888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhhhcCCCCCCceeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecc
Q 002715 714 RGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKS 793 (889)
Q Consensus 714 rg~Fan~r~~n~l~~g~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~S 793 (889)
||||+|+|++|+|+ |.+|++|.|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++||||||||+|
T Consensus 728 RgtF~Niri~N~l~-g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~~~lGvraVIA~S 806 (898)
T PTZ00092 728 RGTFANIRLINKLC-GKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAES 806 (898)
T ss_pred ceeccccceeeeec-cCCCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEec
Confidence 99999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhhccCcccceecCCccchhhccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCEEEEEEecCCCHHHHHHHHh
Q 002715 794 FERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDH 873 (889)
Q Consensus 794 FaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~a 873 (889)
|+||||+||+|||||||+|.++++++++++++++.++|++... .++||++++++..+|++|.++++++|+.|++||++
T Consensus 807 F~rIh~~Nli~~GvlPL~f~~~~~~~~l~~~~~~~i~i~~~~~--~l~p~~~v~v~~~~G~~~~~~~r~dt~~e~~y~~~ 884 (898)
T PTZ00092 807 FERIHRSNLVGMGILPLQFLNGENADSLGLTGKEQFSIDLNSG--ELKPGQDVTVKTDTGKTFDTILRIDTEVEVEYFKH 884 (898)
T ss_pred HHHHHHhhhhhcCcceeecCCcccHHHhcCCCCeEEEEecccc--ccCCCCeEEEEeCCCcEEEEEEeCCCHHHHHHHHc
Confidence 9999999999999999999999999999999999999986322 58999999887788899999999999999999999
Q ss_pred cCHHHHHHHHHhh
Q 002715 874 GGILQYVIRNLIN 886 (889)
Q Consensus 874 GGiL~yv~~~~~~ 886 (889)
|||||||+|++++
T Consensus 885 GGiL~yv~~~~~~ 897 (898)
T PTZ00092 885 GGILQYVLRKLVK 897 (898)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999999875
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=1.3e-258 Score=2246.47 Aligned_cols=853 Identities=64% Similarity=1.051 Sum_probs=811.7
Q ss_pred eeEEEeCCCCCC-----Cch--------hhhhcccCCccccHHHHHHHHhhhcCCCCceeEeeccceeeeecCCchhHHH
Q 002715 22 FGKYYSLPALND-----PRI--------ESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVV 88 (889)
Q Consensus 22 ~~~~~~l~~~~~-----~~l--------E~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~tg~~a~~ 88 (889)
.|+||+|++|+. +|| ||+||||||..++++++++|++|......+.||+|+||||+||||||+|+++
T Consensus 2 ~~~~~~l~~l~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f~p~RvllQD~TGvpa~v 81 (876)
T TIGR01341 2 TYYYYSLKALEESGGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVADTEIAFKPARVVMQDFTGVPAVV 81 (876)
T ss_pred ceEEEehHHhhcccCChhhCCcHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcccCCCCceeccCchhheeccccCchHHH
Confidence 699999998852 343 9999999999999999999999986655667999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCc
Q 002715 89 DLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSG 168 (889)
Q Consensus 89 dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~G 168 (889)
|||||||+++++|+||.+|||.+||+|+||||||++.++..+++..|+.+||+||+|||+||||++++|.||+|+|||+|
T Consensus 82 dlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~G 161 (876)
T TIGR01341 82 DLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTG 161 (876)
T ss_pred HHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccceeeecCC----CcccCCeeeecCCCCcccCcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccC
Q 002715 169 IVHQVNLEYLGRVVFNTN----GMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKL 244 (889)
Q Consensus 169 I~Hqv~lE~la~~v~~~~----G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L 244 (889)
||||||+||||+||+.++ |++|||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|
T Consensus 162 I~HqV~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L 241 (876)
T TIGR01341 162 IIHQVNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKL 241 (876)
T ss_pred eeceechhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeec
Confidence 999999999999999653 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHH
Q 002715 245 RDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVS 324 (889)
Q Consensus 245 ~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~ 324 (889)
++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||++++++
T Consensus 242 ~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~ 321 (876)
T TIGR01341 242 QEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVE 321 (876)
T ss_pred CCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCC-CCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhcccccCCCccCcccccc
Q 002715 325 MIESYLRANKMFVDYSEPQ-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQS 403 (889)
Q Consensus 325 ~~~~y~~~~~l~~~~~~~D-~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~ 403 (889)
++++|+|+|++|+ +| ++|.|+++++||||+|+|+||||++|||++||++++++|.+++..+.+.+|+.+...
T Consensus 322 l~~~y~k~~~l~~----~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~--- 394 (876)
T TIGR01341 322 LVEKYARAQGLFY----DDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE--- 394 (876)
T ss_pred HHHHHHHhccccc----CCCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh---
Confidence 9999999999995 34 689999999999999999999999999999999999998877654433333322111
Q ss_pred ccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHH
Q 002715 404 KVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKY 483 (889)
Q Consensus 404 ~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~ 483 (889)
.....++|++..|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++
T Consensus 395 -~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~ 473 (876)
T TIGR01341 395 -PLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPY 473 (876)
T ss_pred -hhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHH
Confidence 1112246888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHHHHcccccccC
Q 002715 484 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDF 563 (889)
Q Consensus 484 l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~ 563 (889)
|+++||+|++||||+||||||+++++++++|.+++++.+||||+||||+|||||..++||||||+|||||||+|+|++|+
T Consensus 474 L~~aGf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~ 553 (876)
T TIGR01341 474 LEELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINL 553 (876)
T ss_pred HHHcCCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCc
Q 002715 564 ETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFK 643 (889)
Q Consensus 564 ~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~ 643 (889)
++||+|.|++|++|||+||||+.+||++++.++++++||++.|.+++.+++.|++|+++.++.|+||++||||++||||+
T Consensus 554 ~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~ 633 (876)
T TIGR01341 554 YTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFE 633 (876)
T ss_pred cCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhh
Q 002715 644 DMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLV 723 (889)
Q Consensus 644 ~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~ 723 (889)
+++.+++++.+|++||||+++|||||||||||||+|+++||||+||+++|++++|||||||||||||||+||||+|+|++
T Consensus 634 ~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~ 713 (876)
T TIGR01341 634 EMKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIK 713 (876)
T ss_pred ccccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhh
Confidence 99988888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCceeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhc
Q 002715 724 NKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLV 803 (889)
Q Consensus 724 n~l~~g~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli 803 (889)
|+|++|.+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+||||+||+
T Consensus 714 N~l~~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N~~ 793 (876)
T TIGR01341 714 NLMVKGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFERIHRSNLV 793 (876)
T ss_pred hhcccCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccceecCCccchhhccCCCCeEEEEeCCCCcccCCCCcEEEEEc--CCC--EEEEEEecCCCHHHHHHHHhcCHHHH
Q 002715 804 GMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVT--DSG--KSFTCVIRFDTEVELAYFDHGGILQY 879 (889)
Q Consensus 804 ~~GilpL~f~~~~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~--~~g--~~~~~~~~~~t~~e~~~~~aGGiL~y 879 (889)
|||||||+|++++++++|+++|+|.|+|.... +++||++++++. .+| ++|.+.+++||+.|++||++||||||
T Consensus 794 ~~Gilpl~~~~~~~~~~l~l~g~e~~~i~~~~---~l~pg~~v~v~~~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~y 870 (876)
T TIGR01341 794 GMGVIPLQFPQGEDAETLGLTGDETIDIDGIK---DLKPGKEVTVTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQY 870 (876)
T ss_pred hcCcceEecCCCCCHHHhCCCCCCeEEEcCcc---ccCCCCEEEEEEEcCCCCEEEEEEEEecCCHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999995332 578998887753 577 78999999999999999999999999
Q ss_pred HHHHHh
Q 002715 880 VIRNLI 885 (889)
Q Consensus 880 v~~~~~ 885 (889)
|+|+++
T Consensus 871 v~r~~~ 876 (876)
T TIGR01341 871 VLRKFL 876 (876)
T ss_pred HHHhhC
Confidence 999874
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=3.3e-257 Score=2241.14 Aligned_cols=864 Identities=58% Similarity=0.983 Sum_probs=817.1
Q ss_pred CcchhcccceecCCCcceeEEEeCCCCCC------Cch--------hhhhcccCCccccHHHHHHHHhhhcCCCCceeEe
Q 002715 5 NPFKSILKTLQRPDGGEFGKYYSLPALND------PRI--------ESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIP 70 (889)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~l--------E~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~ 70 (889)
++|. .+++|+++++ .|+||+|++++. +|| ||+|||||+..|+++++++|++|......+.||+
T Consensus 4 ~~~~-~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~lP~s~rvllE~~lr~~d~~~v~~~~~~~~~~w~~~~~~~~ei~ 80 (889)
T PRK12881 4 NLHK-TLKEFDVGGK--TYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALANWLPERKSDDEIP 80 (889)
T ss_pred Cccc-cccceeeCCe--eEEEEEhHHhhccccCChhhCCchHHHHHHHHhhcCCCCCCCHHHHHHHHhchhcCCCCceec
Confidence 5664 3567888774 899999998842 333 9999999999999999999999987655667999
Q ss_pred eccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccccHHHHHhhhHHHHHHhhhhhhhh
Q 002715 71 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFL 150 (889)
Q Consensus 71 ~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl 150 (889)
|+||||+|||+||+||++|||||||+++++|+||.++||.+||+++||||||++.++..+++.+|+.+||+||+|||+||
T Consensus 81 ~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fL 160 (889)
T PRK12881 81 FVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQFL 160 (889)
T ss_pred cccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccccCCCCceeccccccccceeeecC----CCcccCCeeeecCCCCcccCcccceeccCCHHHHHHHHcCC
Q 002715 151 KWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----NGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQ 226 (889)
Q Consensus 151 ~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~----~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~ 226 (889)
||++++|+||+|+|||+|||||||+||||+||+.+ .|+++||++|||||||||+||||+|||||||+|++++|+||
T Consensus 161 kw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlgq 240 (889)
T PRK12881 161 KWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQ 240 (889)
T ss_pred HHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhCC
Confidence 99999999999999999999999999999999965 37999999999999999999999999999999999999999
Q ss_pred ceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEEeCC
Q 002715 227 PMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVD 306 (889)
Q Consensus 227 ~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~D 306 (889)
|+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|
T Consensus 241 ~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~D 320 (889)
T PRK12881 241 PVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPVD 320 (889)
T ss_pred cEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhh
Q 002715 307 HVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACL 386 (889)
Q Consensus 307 e~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~ 386 (889)
++|++||+.|||++++++++|+|.|+|++|++ +|++|.|+++++||||+|+|+||||++|||++||++++++|.+++
T Consensus 321 e~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~~ 397 (889)
T PRK12881 321 EQTLDYLRLTGRTEAQIALVEAYAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLF 397 (889)
T ss_pred hhHHHHHHhcccchHHHHHHHHHHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHHh
Confidence 99999999999999999999999999999974 588999999999999999999999999999999999999888766
Q ss_pred cccccCCCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEec
Q 002715 387 DNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAP 466 (889)
Q Consensus 387 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~P 466 (889)
......+++.... -.+....+.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|
T Consensus 398 ~~~~~~~~~~~~~----------~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~P 467 (889)
T PRK12881 398 SKPVAENGFAKKA----------QTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAP 467 (889)
T ss_pred hhHHHhhhhhccc----------ccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeC
Confidence 4322212211100 023455688999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecC
Q 002715 467 GSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLAS 546 (889)
Q Consensus 467 gS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaS 546 (889)
||++|++||+++||+++|+++||+|++||||+||||||+++++++++|++|+++++||||+||||+||||+..++|||||
T Consensus 468 GS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLaS 547 (889)
T PRK12881 468 GSKVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLAS 547 (889)
T ss_pred CCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEECC
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHcccccccCCCCCcccCCCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCc
Q 002715 547 PPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTL 626 (889)
Q Consensus 547 P~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~ 626 (889)
|++||||||+|+|++|+++||||+++||++|||+||||+.+||++++++.+++++|.+.|++++.+++.|++|+++.+++
T Consensus 548 P~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~ 627 (889)
T PRK12881 548 PPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGPL 627 (889)
T ss_pred HHHHHHHHhcCceecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccCCCCCccCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccC
Q 002715 627 YAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRR 706 (889)
Q Consensus 627 ~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rr 706 (889)
|+||++||||++||||+++...++++.+|++||||+++|||||||||||||+|+++||||+||+++|+.++||||||+||
T Consensus 628 ~~wd~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~rR 707 (889)
T PRK12881 628 YDWDPKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRR 707 (889)
T ss_pred eccCCCCCcccCCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhcccccccc
Confidence 99999999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhccccccchhhhhhhcCCCCCCceeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCc
Q 002715 707 GNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV 786 (889)
Q Consensus 707 gN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV 786 (889)
||||||+||||+|+|++|+|+++.+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||
T Consensus 708 gN~evm~rgtF~nir~~N~l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lGv 787 (889)
T PRK12881 708 GNHEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLGV 787 (889)
T ss_pred cchHHhhhhccccCcccceeccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCeEEEEeCCCCcccCCCCcEEEEE--cCCC--EEEEEEecC
Q 002715 787 KAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIRF 862 (889)
Q Consensus 787 ~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~--~~~g--~~~~~~~~~ 862 (889)
+||||+||+||||+||+|||||||+|+++.++++|+++++|.++|+.... .++||++++++ ..+| .+|.+.+++
T Consensus 788 ~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~d~i~I~~~~~--~i~p~~~v~v~~~~~~G~~~~~~~~~r~ 865 (889)
T PRK12881 788 KAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFDIEGLPG--EIKPRQDVTLVIHRADGSTERVPVLCRI 865 (889)
T ss_pred cEEEEecHHHHHHhhhhhcCcceEEeCCccchhhcCcCCCCEEEEeCCcc--ccCCCCeEEEEEEeCCCCEEEEEEEecc
Confidence 99999999999999999999999999999999999999999999975542 57899988764 3566 678888899
Q ss_pred CCHHHHHHHHhcCHHHHHHHHHhh
Q 002715 863 DTEVELAYFDHGGILQYVIRNLIN 886 (889)
Q Consensus 863 ~t~~e~~~~~aGGiL~yv~~~~~~ 886 (889)
+|+.|++||++||||+|+++++++
T Consensus 866 dt~~e~e~~~aGGiL~yv~~~~~~ 889 (889)
T PRK12881 866 DTPIEVDYYKAGGILPYVLRQLLA 889 (889)
T ss_pred CCHHHHHHHHcCCHHHHHHHHhhC
Confidence 999999999999999999999863
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=1.1e-256 Score=2232.29 Aligned_cols=866 Identities=61% Similarity=1.032 Sum_probs=822.3
Q ss_pred CCCCCcchhcccceecCCCcceeEEEeCCCCCC------Cch--------hhhhcccCCccccHHHHHHHHhhhcCCCCc
Q 002715 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALND------PRI--------ESAIRNCDEFQVKSKDVEKIIDWETTSPKQ 66 (889)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~l--------E~~lR~~~~~~~~~~~ie~il~~~~~~~~~ 66 (889)
|...++|.. +++|+++++ .|+||+|++++. .|| ||+|||||+..++++++++|++|......+
T Consensus 1 ~~~~~~~~~-~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~lP~sirillE~~lr~~d~~~~~~~~v~~~~~w~~~~~~~ 77 (888)
T PRK09277 1 MSSTDSFKA-RKTLEVGGK--SYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKPD 77 (888)
T ss_pred CCCCCcccc-cceeeeCCe--eEEEEEhHHhhhcccCChhhCCcHHHHHHHHHhhcCCCccCCHHHHHHHHhchhcCCCC
Confidence 344566643 567888774 899999987742 233 999999999999999999999998766667
Q ss_pred eeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccccHHHHHhhhHHHHHHhhhh
Q 002715 67 VEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKER 146 (889)
Q Consensus 67 ~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~er 146 (889)
.||+|+||||+|||+||+|+++||||||++++++|+||++|||.+||+||+||+||+++++..+++.+|+.++|+||.||
T Consensus 78 ~ei~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er 157 (888)
T PRK09277 78 REIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEER 157 (888)
T ss_pred ceeeeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccccccccCCCCceeccccccccceeeecC-CC--cccCCeeeecCCCCcccCcccceeccCCHHHHHHHH
Q 002715 147 FAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT-NG--MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAM 223 (889)
Q Consensus 147 y~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~-~G--~~~PdtvvGtDSHT~~~GalG~lg~GVGg~e~~~~m 223 (889)
|.||||++++|+||+|+|||+|||||||+||||+||+.+ +| +++||++|||||||||+||||+|||||||+|++++|
T Consensus 158 ~~fLkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam 237 (888)
T PRK09277 158 YQFLKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAM 237 (888)
T ss_pred HhHHHHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHH
Confidence 999999999999999999999999999999999999977 78 999999999999999999999999999999999999
Q ss_pred cCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEE
Q 002715 224 LGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFF 303 (889)
Q Consensus 224 ~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~f 303 (889)
+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+|||
T Consensus 238 ~g~~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~f 317 (888)
T PRK09277 238 LGQPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFF 317 (888)
T ss_pred hcCcEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhh
Q 002715 304 PVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWH 383 (889)
Q Consensus 304 p~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~ 383 (889)
|+|++|++||+.|||++++++++|+|.|+|++|+. +|++|.|+++++||||+|+|+||||++|||++||++++++|.
T Consensus 318 p~De~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~---~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~ 394 (888)
T PRK09277 318 PIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRD---PLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFA 394 (888)
T ss_pred cCChhHHHHHHhcCCChHHHHHHHHHHHHHhhhcc---CCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchh
Confidence 99999999999999999999999999999999962 588999999999999999999999999999999999998877
Q ss_pred hhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEE
Q 002715 384 ACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTS 463 (889)
Q Consensus 384 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~ 463 (889)
+++.. +.+++ ..+..++|....|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++
T Consensus 395 ~~~~~--~~~~~---------~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~ 463 (888)
T PRK09277 395 KSAEL--GVQGF---------GLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTS 463 (888)
T ss_pred hhchh--hhhhh---------hhhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEE
Confidence 54321 11111 12334678888999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCce
Q 002715 464 LAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANY 543 (889)
Q Consensus 464 v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~y 543 (889)
|+|||++|++||+++||+++|+++||+|++||||+||||||+++++++++|.+++++++||||+||||+|||||..+++|
T Consensus 464 v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~y 543 (888)
T PRK09277 464 LAPGSKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANY 543 (888)
T ss_pred EeCCCHHHHHHHHHCChHHHHHHcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHcccccccCCCCCcccCCCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCC
Q 002715 544 LASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPS 623 (889)
Q Consensus 544 LaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~ 623 (889)
||||++||||||+|+|++||++||+|+++||++|||+||||+.+||++++.+.+++++|++.|.+++.+++.|+++++++
T Consensus 544 LaSP~lvaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~ 623 (888)
T PRK09277 544 LASPPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPE 623 (888)
T ss_pred EcCHHHHHHHHHcCccccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCccccCCCCCccCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCcccccccc
Q 002715 624 GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYG 703 (889)
Q Consensus 624 ~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg 703 (889)
++.|+||++||||++||||++++.++.++.+|.++|||+++|||||||||||||+|+++||||+||+++|+.++||||||
T Consensus 624 ~~~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg 703 (888)
T PRK09277 624 GPLYDWDPDSTYIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYG 703 (888)
T ss_pred CCccccCCCCCcccCCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccc
Confidence 99999999999999999999998877778899999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccc
Q 002715 704 SRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPML 783 (889)
Q Consensus 704 ~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~ 783 (889)
+||||||||+||||+|+|++|+|++|.+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||+|++++
T Consensus 704 srRgN~evm~RgtfaNir~~N~l~~g~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~ 783 (888)
T PRK09277 704 SRRGNHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRL 783 (888)
T ss_pred cccccchhhhheeccccchhhhcccCCccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCeEEEEeCCCCcccCCCCcEEEEE--cCCC--EEEEEE
Q 002715 784 LGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCV 859 (889)
Q Consensus 784 lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~--~~~g--~~~~~~ 859 (889)
|||+||||+||+||||+||+|||||||+|++++++++|+++++|.|+|+... +++||++++++ ..+| ++|.++
T Consensus 784 lgi~avia~sf~rI~~~Nli~~Gilpl~~~~~~~~~~lgl~g~e~~~i~~l~---~l~p~~~v~v~~~~~~G~~~~~~~~ 860 (888)
T PRK09277 784 LGVKAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEGLE---DLKPGATVTVVITRADGEVVEFPVL 860 (888)
T ss_pred hCCcEEEEecHHHHHHhhHhhcCcceeecCCcccHHHhCCCCCceEEEcCcc---cCCCCCEEEEEEEeCCCCEEEEEEE
Confidence 9999999999999999999999999999999999999999999999996433 47899888773 4566 789999
Q ss_pred ecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 002715 860 IRFDTEVELAYFDHGGILQYVIRNLIN 886 (889)
Q Consensus 860 ~~~~t~~e~~~~~aGGiL~yv~~~~~~ 886 (889)
+++||+.|++||++|||||||+|++++
T Consensus 861 ~r~dt~~Ei~y~~~GGiL~yv~r~~~~ 887 (888)
T PRK09277 861 CRIDTAVEVDYYRNGGILQYVLRDLLA 887 (888)
T ss_pred EecCCHHHHHHHHcCCHHHHHHHHHhh
Confidence 999999999999999999999999875
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=4e-252 Score=2183.70 Aligned_cols=823 Identities=45% Similarity=0.800 Sum_probs=781.2
Q ss_pred eeEEEeCC-CCCC------Cch--------hhhhcccCCccccHHHHHHHHhhhcCCCCceeEeeccceeeeecCCchhH
Q 002715 22 FGKYYSLP-ALND------PRI--------ESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPA 86 (889)
Q Consensus 22 ~~~~~~l~-~~~~------~~l--------E~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~tg~~a 86 (889)
.|+||+|. +++. .|| ||+||||||..++++ +++|++|. .+.||+|+|+||+||||||+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~lP~s~rillE~~lr~~d~~~~~~~-~~~~~~w~----~~~ei~f~P~RV~mqD~Tgvpa 86 (858)
T TIGR02333 12 DLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVRRCDPETLSAS-LLQIIERK----RDLDFPWYPARVVCHDILGQTA 86 (858)
T ss_pred ceEEEEcHHhhhhcccCChhhCCchHHHHHHHHhhcCCChhhHHH-HHHHHcCC----CCCeeccCcceeeeccccCcch
Confidence 69999996 6631 333 999999999999998 99999992 3569999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccc-cHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCC
Q 002715 87 VVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR-SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPP 165 (889)
Q Consensus 87 ~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~-~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~pp 165 (889)
++|||+||++++++|+||++|||.+||+||||||||+|+++ +++++..|+.+||+||.|||+|||||+++|+||+||||
T Consensus 87 ~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~pp 166 (858)
T TIGR02333 87 LVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPA 166 (858)
T ss_pred hhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCC
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred CCceeccccccccceeeecCCCcccCCeeeecCCCCcccCcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCC
Q 002715 166 GSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLR 245 (889)
Q Consensus 166 g~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~ 245 (889)
|+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|+
T Consensus 167 G~GI~HQV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~ 246 (858)
T TIGR02333 167 GNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQ 246 (858)
T ss_pred CCCEeeeEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHH
Q 002715 246 DGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSM 325 (889)
Q Consensus 246 ~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~ 325 (889)
+|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||+++++++
T Consensus 247 ~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~l 326 (858)
T TIGR02333 247 PGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKL 326 (858)
T ss_pred CCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhcccccCCCccCcccccccc
Q 002715 326 IESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKV 405 (889)
Q Consensus 326 ~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 405 (889)
+|+|.|+|++|++ +|++|+|+++++||||+|||+||+|++|||++||+|++..... ....
T Consensus 327 ve~y~k~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~------------~~~~----- 386 (858)
T TIGR02333 327 VETYAKAAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIA------------GPAE----- 386 (858)
T ss_pred HHHHHHHHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcccc------------cccc-----
Confidence 9999999999974 4779999999999999999999999999999999998752110 0000
Q ss_pred ceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHH
Q 002715 406 AEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLN 485 (889)
Q Consensus 406 ~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~ 485 (889)
. ...| .+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 387 ~--~~~g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~ 461 (858)
T TIGR02333 387 E--QPEG---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELE 461 (858)
T ss_pred c--cccC---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHH
Confidence 0 0123 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHHHHcccccccCCC
Q 002715 486 HLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFET 565 (889)
Q Consensus 486 ~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~ 565 (889)
++||+|++||||+||||||++.++++++|.+++++.++|||+||||+||||+..+++|||||++||||||+|+|+|||++
T Consensus 462 ~aGf~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~ 541 (858)
T TIGR02333 462 QLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEK 541 (858)
T ss_pred HcCCEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccC
Q 002715 566 EPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDM 645 (889)
Q Consensus 566 ~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~ 645 (889)
||||.|+||++|||+||||+.+||++++++.++|++|++.|++++++++ ++++.+++|+||++||||++||||+++
T Consensus 542 dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~ 617 (858)
T TIGR02333 542 DVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA 617 (858)
T ss_pred CccccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC
Confidence 9999999999999999999999999999999999999999999998876 788889999999999999999999987
Q ss_pred CCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhh
Q 002715 646 TMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNK 725 (889)
Q Consensus 646 ~~~~~~~~~i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~ 725 (889)
+.++.+|++||+|+++||+||||||||||+|+++||||+||+++|+.+++|||||+||||||||+||||+|+|++|+
T Consensus 618 ---~~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~ 694 (858)
T TIGR02333 618 ---LAGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNE 694 (858)
T ss_pred ---CCcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhh
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC--C--CCCCceeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhh
Q 002715 726 LLN--G--EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSN 801 (889)
Q Consensus 726 l~~--g--~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~N 801 (889)
|++ | .+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+||||+|
T Consensus 695 l~~~~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N 774 (858)
T TIGR02333 695 MVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTN 774 (858)
T ss_pred hccccCccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHHhh
Confidence 998 4 479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccceecCCccchhhccCCCCeEEEEeCCCCcccCCCCcEEEEE--cCCC--EEEEEEecCCCHHHHHHHHhcCHH
Q 002715 802 LVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIRFDTEVELAYFDHGGIL 877 (889)
Q Consensus 802 li~~GilpL~f~~~~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~--~~~g--~~~~~~~~~~t~~e~~~~~aGGiL 877 (889)
|+|||||||+|.+++++++|+++++|.|+|. . +++||++++++ ..+| .+|.+.+++||+.|++||++||||
T Consensus 775 l~~~G~lpl~f~~~~~~~~l~l~g~e~~~i~--~---~~~p~~~~~v~~~~~~g~~~~~~~~~r~dt~~ei~y~~~GgiL 849 (858)
T TIGR02333 775 LVGMGVLPLEFKPGTNRHTLGLDGTETFDVV--G---EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVL 849 (858)
T ss_pred hhhcCcceEEeCCCCChhhcCCCCCeeEEec--c---CCCCCCeEEEEEEeCCCCEEEEEEEEEcCCHHHHHHHHcCCHH
Confidence 9999999999999999999999999999983 2 47899988775 3677 689999999999999999999999
Q ss_pred HHHHHHHhh
Q 002715 878 QYVIRNLIN 886 (889)
Q Consensus 878 ~yv~~~~~~ 886 (889)
|||+|++++
T Consensus 850 ~~v~~~~~~ 858 (858)
T TIGR02333 850 QRFAQDFLE 858 (858)
T ss_pred HHHHHHhhC
Confidence 999999863
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=2.8e-251 Score=2149.83 Aligned_cols=840 Identities=59% Similarity=1.009 Sum_probs=800.9
Q ss_pred ccceecCCCcceeEEEeCCCCCC----Cch--------hhhhcccCCccccHHHHHHHHhhhcCCCCceeEeeccceeee
Q 002715 11 LKTLQRPDGGEFGKYYSLPALND----PRI--------ESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLL 78 (889)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~~~~----~~l--------E~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~ 78 (889)
++++.+++. .|+||+|++++. .+| ||++|++|+ ++++++.++.|........||.|+|+||+|
T Consensus 6 ~~~~~~~~~--~~~y~~l~~~~~~~~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~~~~~~ei~~~p~RVvm 80 (861)
T COG1048 6 RKTLTVGGK--TYYYYDLPKLEESGKISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPSGKPEKEIAFRPARVVM 80 (861)
T ss_pred hhhcccCCc--eeEEeehhhhhhccccccCChhHHHHHHHhcccccc---chhHHHHHhccccccCcccccccccceeee
Confidence 467888774 899999999854 222 999999998 889999999998665567799999999999
Q ss_pred ecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccccHHHHHhhhHHHHHHhhhhhhhhhhcccccc
Q 002715 79 QDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFH 158 (889)
Q Consensus 79 qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~ 158 (889)
|||||+|+++|+|+||+++.++|+||.++||.+||+|+||||++++.++.++|+++|+.+||+||.|||+||+|++++|+
T Consensus 81 QD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~ 160 (861)
T COG1048 81 QDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFY 160 (861)
T ss_pred ecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceeccccccccceeeecCCCcccCCeeeecCCCCcccCcccceeccCCHHHHHHHHcCCceEeecCcEEEE
Q 002715 159 NMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGF 238 (889)
Q Consensus 159 ~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V 238 (889)
||+|||||+||||||||||||+|||..+|++||||+|||||||||+||||+|||||||+|||++|+|||+||++|+||||
T Consensus 161 n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGV 240 (861)
T COG1048 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGV 240 (861)
T ss_pred CcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEEeCChHHHHHHhhcCC
Q 002715 239 KLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGR 318 (889)
Q Consensus 239 ~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr 318 (889)
+|+|+|++|||||||||+|+++||++|+||||||||||||++||+++|+|||||+|||||||||||+|++|++||+.|||
T Consensus 241 kLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR 320 (861)
T COG1048 241 KLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGR 320 (861)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhcccccCCCccCc
Q 002715 319 SDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIP 398 (889)
Q Consensus 319 ~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~ 398 (889)
++++++++|+|+++|+||+++ +|++|+|+++++||||+|+|+||||++||++++|++++.+|.+.+......
T Consensus 321 ~~~~i~lve~y~~~~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~------ 392 (861)
T COG1048 321 SEEQVALVEAYAKAQGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIK------ 392 (861)
T ss_pred chHHHHHHHHHHHHhcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhcc------
Confidence 999999999999999999874 578999999999999999999999999999999999999988765432110
Q ss_pred cccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHc
Q 002715 399 KEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNS 478 (889)
Q Consensus 399 ~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~ 478 (889)
..+...|+ .+.||+|+||+|||||||||||+|+||++|||||+++|++++|||||+|+|||++|.+||+++
T Consensus 393 -------~~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~ 463 (861)
T COG1048 393 -------RVYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKA 463 (861)
T ss_pred -------cccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHc
Confidence 11333444 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHHHHccc
Q 002715 479 GLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGS 558 (889)
Q Consensus 479 Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~ 558 (889)
||+++|+++||.++++||||||||||+|++++++.|.++++++++|+|+||||+||+||..+++|||||+||+||||||+
T Consensus 464 Gl~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~ 543 (861)
T COG1048 464 GLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGT 543 (861)
T ss_pred CCHHHHHhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcccCCCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccC
Q 002715 559 VNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 638 (889)
Q Consensus 559 i~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~ 638 (889)
|++|+++||+|.+++|++|||+||||+.+||.+.+.+.+.+++|.+.|.++|. |+.++++.+++|.|++.||||++
T Consensus 544 i~~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~ 619 (861)
T COG1048 544 INFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRL 619 (861)
T ss_pred cccCcccCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccC
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred CCCCccCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhcccccc
Q 002715 639 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFA 718 (889)
Q Consensus 639 pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fa 718 (889)
||||+++...+.+ |+++|+|+++|||||||||||||+|+++|||++||.++|+++.|||+|||||||||||+||||+
T Consensus 620 pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfa 696 (861)
T COG1048 620 PPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFA 696 (861)
T ss_pred CCccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhc
Confidence 9999998776543 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcCCCCCCceeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHH
Q 002715 719 NIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIH 798 (889)
Q Consensus 719 n~r~~n~l~~g~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh 798 (889)
|+|++|+|+++ +|++|+|+|+|+ |||+|++|+++|+|+|||||+|||+|||||||||++++|||+|||||||||||
T Consensus 697 Nir~~n~~~~~-~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeRIH 772 (861)
T COG1048 697 NIRIRNEMVPG-EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIH 772 (861)
T ss_pred ccccccccccc-cCcceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHHHH
Confidence 99999999988 999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccceecCCccchhhccCCCCeEEEEeCCCCcccCCCCcEEEEE--cCCC--EEEEEEecCCCHHHHHHHHhc
Q 002715 799 RSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIRFDTEVELAYFDHG 874 (889)
Q Consensus 799 ~~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~--~~~g--~~~~~~~~~~t~~e~~~~~aG 874 (889)
|+||||||||||||++++++++|++++.+.++|.+.+ .++|+.+++|+ ..|| .++.+.++++|+.|++||++|
T Consensus 773 rSNLi~mGvLPLqf~~~~~~~~l~l~g~e~~~i~~~~---~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~G 849 (861)
T COG1048 773 RSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLE---NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAG 849 (861)
T ss_pred HhhcccceeeeeeccCCCChhhcCCCCceeEeecccc---cCCCCceEEEEEEcCCCceEEEeeeeecCCHHHHHHHHcC
Confidence 9999999999999999999999999999999987665 57888877664 4566 678899999999999999999
Q ss_pred CHHHHHHHHHhh
Q 002715 875 GILQYVIRNLIN 886 (889)
Q Consensus 875 GiL~yv~~~~~~ 886 (889)
|||+|+++++++
T Consensus 850 GiL~~v~~~~~~ 861 (861)
T COG1048 850 GILNYVKRDLLK 861 (861)
T ss_pred chHHHHHHHhhC
Confidence 999999998753
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=5.9e-179 Score=1568.86 Aligned_cols=697 Identities=29% Similarity=0.450 Sum_probs=596.9
Q ss_pred cHHHHHHHHhhhcCCC-------------CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEE
Q 002715 49 KSKDVEKIIDWETTSP-------------KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDL 115 (889)
Q Consensus 49 ~~~~ie~il~~~~~~~-------------~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~l 115 (889)
.+|++||||+.|.+.. .+.+|.++|||||+||+||+++++||++| |.+ +|..|+++
T Consensus 19 ~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~-------g~~----~v~~P~~v 87 (745)
T TIGR01340 19 PLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTC-------GLP----QVAVPASI 87 (745)
T ss_pred CcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CCC----CCCCCCeE
Confidence 6899999999997532 34689999999999999999999999764 542 34456789
Q ss_pred EecCCCccCccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccCC-ee
Q 002715 116 VIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SV 194 (889)
Q Consensus 116 viDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tv 194 (889)
++||++|++.... .|+..++.||.|+|+|++|.+++| |++|+|||+||||||++|+ +++|| ++
T Consensus 88 ~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E~----------~a~PG~~i 151 (745)
T TIGR01340 88 HCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLMM 151 (745)
T ss_pred EeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchhh----------ccCCCCeE
Confidence 9999999765432 457788999999999999999999 8999999999999999994 55786 69
Q ss_pred eecCCCCcccCcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEe
Q 002715 195 VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFY 274 (889)
Q Consensus 195 vGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~ 274 (889)
|||||||||+||||+||||||++|++++|+|+++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+
T Consensus 152 vGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~ 231 (745)
T TIGR01340 152 LGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYF 231 (745)
T ss_pred EccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccChhhhhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHH-HHHHHHHHhhhcccCCCCCCCCcccEEEE
Q 002715 275 GEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVS-MIESYLRANKMFVDYSEPQSERVYSSYLE 353 (889)
Q Consensus 275 G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~-~~~~y~~~~~l~~~~~~~D~~a~Y~~~ie 353 (889)
|+|+++||+++|||||||++|+|||+||||+|++|++||+.+||+++... .++.|.. .+| .+|++|.|+++++
T Consensus 232 G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~--~~~----~~D~~a~Y~~~i~ 305 (745)
T TIGR01340 232 GPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSF--FKL----KADEGAQYDELIE 305 (745)
T ss_pred CcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhc--ccc----cCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999875422 2233221 223 5799999999999
Q ss_pred EEcCCcccCccCCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEeecCCCC
Q 002715 354 LNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNT 433 (889)
Q Consensus 354 iDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~ 433 (889)
||||+|||+||+|++|||++||+|+++++++ .|++ .+|+||||||||||
T Consensus 306 iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~-----~~Id~a~IGSCTNg 354 (745)
T TIGR01340 306 IDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP-----EKLSAGLIGSCTNS 354 (745)
T ss_pred EEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCC-----ceecEEEEEcCCCC
Confidence 9999999999999999999999999875432 1121 24789999999999
Q ss_pred CChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhh
Q 002715 434 SNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAA 513 (889)
Q Consensus 434 s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~ 513 (889)
|+|||+.||.+ +|+|++ ++++|.||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++++. .
T Consensus 355 r~~Dl~~AA~i-lk~a~~--~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~-----~ 426 (745)
T TIGR01340 355 SYEDMSRCASI-VKDAEQ--AGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD-----D 426 (745)
T ss_pred CHHHHHHHHHH-hhhhhh--CCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----c
Confidence 99997666655 566654 566788999999999999999999999999999999999999999999987543 1
Q ss_pred hccCceEEEEeeccCCCCCCCCCC-ccCCceecCHHHHHHHHHcccccccCCCCCcccCCCCceeccccCCCChHHHHHH
Q 002715 514 ITENDIVAAAVLSGNRNFEGRVHP-LTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHV 592 (889)
Q Consensus 514 i~~~~~~~~~vsS~NRNF~GR~g~-~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~ 592 (889)
+.+++.+ ++|||+||||+||||+ ..+.+|||||++||||||+|+|++|+++||| .+++|++|||+ ||+.+|+++.
T Consensus 427 ~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~~ 502 (745)
T TIGR01340 427 VKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPEK 502 (745)
T ss_pred cCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccchh
Confidence 3456754 6899999999999954 5577999999999999999999999999999 69999999999 8999998775
Q ss_pred hhhccCchhhhhhcccccCCCcccccccCC--CCCccccCCCCccccCCCCCccCCCCCCCCCccccceEEeecCCCCCc
Q 002715 593 VQKSVLPDMFKATYEAITKGNPMWNQLSVP--SGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITT 670 (889)
Q Consensus 593 ~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~--~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itT 670 (889)
+| ...+..|+.+..+ ++..|+|+++||||++||+|++. +..+|+++|||+++||||||
T Consensus 503 --------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~~-----~~~~i~~a~vLlk~gd~iTT 562 (745)
T TIGR01340 503 --------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPW-----NGKDLSGLRVLIKVTGKCTT 562 (745)
T ss_pred --------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCCC-----CcCCccCCeEEEEECCCcCh
Confidence 12 2345667766553 67799999999999999999643 45789999999999999999
Q ss_pred CcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcC--CCCCC--ceeecCCCccchh
Q 002715 671 DHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--GEVGP--KTIHIPTGEKLSV 746 (889)
Q Consensus 671 DhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~--g~~g~--~t~~~p~~~~~~i 746 (889)
||||||| .||.+| |+|.|++ .|.|.. +.+++ .+.+.|+|+.+++
T Consensus 563 DHIsPAG---------~~L~~r----------------------g~~~~i~-~n~~~~~~n~~~~~~~~~~~~~g~~~~~ 610 (745)
T TIGR01340 563 DHISAAG---------PWLKYK----------------------GHLDNIS-NNTLIGAVNAETGEVNKAYDLDGSKGTI 610 (745)
T ss_pred hcccccc---------hhHhhc----------------------CChhhhh-cceecccccccCCceeEEEcCCCCccch
Confidence 9999998 499874 4455554 455442 12233 5667789999999
Q ss_pred hhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhhccCCCC
Q 002715 747 FDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGH 826 (889)
Q Consensus 747 ~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~ 826 (889)
+++|++|++.++++|||||+||||||||||||+++++|||+||||+||+||||+||||||||||+|.++++++.+. .+
T Consensus 611 ~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nlin~Gilpl~~~~~~~~~~i~--~g 688 (745)
T TIGR01340 611 PELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQ--PG 688 (745)
T ss_pred HHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhhhcCceeEEecCCccHhhcC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888888765 44
Q ss_pred eEEEEe-CCCCcccCCC---CcEEEE--EcCCC--EEEEEEecCCCHHHHHHHHhcCHHHHH
Q 002715 827 ERYTID-LPSSVSEIRP---GQDVRV--VTDSG--KSFTCVIRFDTEVELAYFDHGGILQYV 880 (889)
Q Consensus 827 e~~~I~-~~~~~~~l~~---g~~v~v--~~~~g--~~~~~~~~~~t~~e~~~~~aGGiL~yv 880 (889)
+.+++. +.+ +.| ++.+++ +..+| .+|.+.+++ |+.|++||++||+|||+
T Consensus 689 d~~~~~~l~~----~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l-t~~E~~~~~aGGiLny~ 745 (745)
T TIGR01340 689 DEVATLNLYE----MLKNGGGGEVDLRVTKKNGKVFEIKLKHTV-SKDQIGFFKAGSALNLM 745 (745)
T ss_pred CEEEEcChhh----ccccCCCCeEEEEEEeCCCcEEEEEEEeeC-CHHHHHHHHcCCcccCC
Confidence 665553 433 333 556664 34555 678888888 99999999999999985
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=2.3e-164 Score=1438.35 Aligned_cols=637 Identities=34% Similarity=0.517 Sum_probs=556.3
Q ss_pred cHHHHHHHHhhhcCCC---CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEE-EecCCCccC
Q 002715 49 KSKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDL-VIDHSVQVD 124 (889)
Q Consensus 49 ~~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~l-viDH~v~~~ 124 (889)
.+|++||||+.|.... .+.+|.++||||++||+||++++++|++| |.++ ..+|. ++ ++||+++..
T Consensus 2 ~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~-------G~~~-~~~p~---~~~~~DH~~~~~ 70 (646)
T PRK07229 2 GLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDR-VKTEL---SVQYVDHNLLQA 70 (646)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHHc-------CCCc-CCCCC---eEEECCCCCCCC
Confidence 3689999999997542 56689999999999999999999999765 7765 33443 44 899988876
Q ss_pred ccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccC-CeeeecCCCCcc
Q 002715 125 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTM 203 (889)
Q Consensus 125 ~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~ 203 (889)
. .||.++|+|++|++++| |++|+|||+||||||++|+|++ | +++|||||||||
T Consensus 71 ~---------------~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~~E~~a~----------PG~~ivGtDSHT~~ 124 (646)
T PRK07229 71 D---------------FENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLERFAF----------PGKTLLGSDSHTPT 124 (646)
T ss_pred C---------------hhhHHHHHHHHHHHHHh-CCeEECCCCCCcceehhhhccC----------CCCEEEeCCCCcCc
Confidence 3 58999999999999999 8999999999999999996654 5 689999999999
Q ss_pred cCcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccCh
Q 002715 204 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSL 283 (889)
Q Consensus 204 ~GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~ 283 (889)
+||||+||||||++|++++|+|+++||++||||+|+|+|+|++|||+|||||+|+++|+.+|++||+|||+|||+++||+
T Consensus 125 ~GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~ 204 (646)
T PRK07229 125 AGGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSV 204 (646)
T ss_pred CCcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCc
Q 002715 284 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCV 363 (889)
Q Consensus 284 ~~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~v 363 (889)
++|||||||++|+|||+||||+|++|++||+.+||.+++.. + .+|++|.|+++++||||+|||+|
T Consensus 205 ~~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~~-----------l----~~D~~a~Y~~~i~iDLs~leP~v 269 (646)
T PRK07229 205 PERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWVE-----------L----LADPDAEYDEVIEIDLSELEPLI 269 (646)
T ss_pred HHHhhhhccccccCceEEEecCcHHHHHHHHhcCCccccee-----------c----cCCCCCCeeEEEEEEccceeeee
Confidence 99999999999999999999999999999999998764311 1 47999999999999999999999
Q ss_pred cCCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHH
Q 002715 364 SGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAA 443 (889)
Q Consensus 364 A~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~ 443 (889)
|+|++|||++||+|+++. +|++||||||||||+||+++||+
T Consensus 270 a~P~~Pd~~~pv~e~~~~---------------------------------------~I~~a~IGSCTN~~~~Dl~~aA~ 310 (646)
T PRK07229 270 AGPHSPDNVVPVSEVAGI---------------------------------------KVDQVLIGSCTNSSYEDLMRAAS 310 (646)
T ss_pred ecCCCccceeEhHHhCCC---------------------------------------eEEEEEEecCCCCChHHHHHHHH
Confidence 999999999999998631 37899999999999999999999
Q ss_pred HHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEE
Q 002715 444 LVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAA 523 (889)
Q Consensus 444 lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~ 523 (889)
+| +|+||+|+||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++. +. ++++ +
T Consensus 311 iL------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~~-~~-------~~~~---~ 373 (646)
T PRK07229 311 IL------KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQA-PA-------TGNV---S 373 (646)
T ss_pred Hh------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCC-CC-------CCcE---E
Confidence 99 899999999999999999999999999999999999999999999999998543 32 3554 7
Q ss_pred eeccCCCCCCCCCCccCCceecCHHHHHHHHHcccccccCCCCCcccCCCCceeccccCCCChHHHHHHhhhccCchhhh
Q 002715 524 VLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFK 603 (889)
Q Consensus 524 vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~ 603 (889)
|||+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |+++||+ ||+. ..++.++|.
T Consensus 374 vst~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~--------~~~~~~~~~ 439 (646)
T PRK07229 374 LRTFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEG--------FAVDDAGII 439 (646)
T ss_pred EEccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCcc--------ccCChhhhc
Confidence 9999999999999988899999999999999999999 999999977 8999997 7882 123444443
Q ss_pred hhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCC
Q 002715 604 ATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDS 683 (889)
Q Consensus 604 ~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPAG~i~~~s 683 (889)
+ .++.|+.++++ .++||+++|+|+++ .++.++++|+++|||||||||||||+
T Consensus 440 ~-------~~~~~~~~~~~---------~~p~~~~~~~~~~~-------~~~~~~~vl~~~gd~i~TD~I~Pa~~----- 491 (646)
T PRK07229 440 A-------PAEDGSDVEVV---------RGPNIKPLPLLEPL-------PDLLEGKVLLKVGDNITTDHIMPAGA----- 491 (646)
T ss_pred C-------CCccccccccc---------CCCCCCCCccCCCC-------CcCceEEEEEEcCCCCChhccCcCCc-----
Confidence 2 34457666554 24678888887543 47899999999999999999999873
Q ss_pred hhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCccchhhhHHHHHHhcCCceEEE
Q 002715 684 PAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVIL 763 (889)
Q Consensus 684 ~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIV 763 (889)
+||+ +|+|+|.|.+++|.+. .|.+ +.+++..+ ++|||
T Consensus 492 ---~~l~--------------~r~~~~~l~~~~f~~~--~~~f-----------------------~~~~~~~~-~~iiV 528 (646)
T PRK07229 492 ---KWLP--------------YRSNIPNISEFVFEGV--DNTF-----------------------PERAKEQG-GGIVV 528 (646)
T ss_pred ---chhc--------------cCCCHHHHHHHHhccC--Chhh-----------------------hHHHHhcC-CcEEE
Confidence 5776 3789999999999853 2322 23566555 78999
Q ss_pred eCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCeEEEE-eCCCCcccCCC
Q 002715 764 AGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTI-DLPSSVSEIRP 842 (889)
Q Consensus 764 AG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I-~~~~~~~~l~~ 842 (889)
||+|||||||||||||+++++||+||||+||+|||||||+|||||||+|.++++++.+ ..+|.++| ++.+ +.+
T Consensus 529 aG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~~~~~~~l--~~gd~i~i~dl~~----~~~ 602 (646)
T PRK07229 529 GGENYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFADPADYDKI--EEGDVLEIEDLRE----FLP 602 (646)
T ss_pred ecCccCCCCchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecChHhHhhc--CCCCEEEEccchh----cCC
Confidence 9999999999999999999999999999999999999999999999999888788765 45788999 6653 445
Q ss_pred CcEEEEEc-CCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002715 843 GQDVRVVT-DSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 885 (889)
Q Consensus 843 g~~v~v~~-~~g~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 885 (889)
+.+|+++. .+|++|.++.++ ++.|++|+++||||||+++++.
T Consensus 603 ~~~v~v~~~~~~~~~~~~~~l-~~~e~~i~~aGGll~~~~~~~~ 645 (646)
T PRK07229 603 GGPLTVVNVTKDEEIEVRHTL-SERQIEILLAGGALNLIKKKLA 645 (646)
T ss_pred CCeEEEEEecCCEEEEEEccC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 66666543 456889988777 8999999999999999999864
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=3.2e-162 Score=1417.48 Aligned_cols=643 Identities=32% Similarity=0.489 Sum_probs=550.5
Q ss_pred HHHHHHHhhhcCCC---CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccc
Q 002715 51 KDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 127 (889)
Q Consensus 51 ~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~ 127 (889)
|++||||+.|.... ++.+|.++||||++||+||++++.+|++| |.+ ++.|.+ +.+++||++|....
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~-------g~~--~v~~~~-~~~~~DH~~~~~d~- 69 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEAL-------EMD--EVKTEL-AAQYCDHNMLQFDF- 69 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHHc-------CCC--ccCCCC-eEEECCCCCCCCCh-
Confidence 47899999997643 56689999999999999999999998765 432 344543 67899999887531
Q ss_pred cHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccC-CeeeecCCCCcccCc
Q 002715 128 SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 206 (889)
Q Consensus 128 ~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~Ga 206 (889)
||.++|+|++|.+++| ++.|+|||+||||||++|+|+ .| +++|||||||||+||
T Consensus 70 --------------~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~t~Ga 124 (658)
T TIGR01342 70 --------------KNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHKENFA----------APGKTLLGSDSHTPTAGG 124 (658)
T ss_pred --------------hhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEchhhcc----------CCCCEEEecCcCcCCCCc
Confidence 6789999999999998 568999999999999999655 45 689999999999999
Q ss_pred ccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhh
Q 002715 207 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 286 (889)
Q Consensus 207 lG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R 286 (889)
||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|||+++||+++|
T Consensus 125 lG~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R 204 (658)
T TIGR01342 125 LGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPER 204 (658)
T ss_pred ccccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCC
Q 002715 287 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGP 366 (889)
Q Consensus 287 ~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P 366 (889)
||||||++|+|||+||||+|++|++||+.++|.+++.. ..+|++|.|+++++||||+|||+||+|
T Consensus 205 ~Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~---------------l~~D~~a~Y~~~i~iDls~leP~va~P 269 (658)
T TIGR01342 205 ATITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD---------------LLADADAEYADEIEIDLSDLEPLIAEP 269 (658)
T ss_pred hhhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee---------------ccCCCCCcEEEEEEEEccceeeeeeCC
Confidence 99999999999999999999999999999998664321 147999999999999999999999999
Q ss_pred CCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHH
Q 002715 367 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVA 446 (889)
Q Consensus 367 ~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla 446 (889)
++|+|++||+|+++ . +|++||||||||||++||++||++|
T Consensus 270 ~~Pd~v~~v~e~~g--------------~-------------------------~id~v~IGSCTn~~~~Dl~~aA~il- 309 (658)
T TIGR01342 270 HMPDNVVPVREIAG--------------I-------------------------EVDQVMIGSCTNGAFEDLLPAAKLL- 309 (658)
T ss_pred CCCCCeeEhHHhCC--------------c-------------------------eeeeEEEeCCCCCChHHHHHHHHHh-
Confidence 99999999999763 1 3568999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeec
Q 002715 447 KKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLS 526 (889)
Q Consensus 447 ~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS 526 (889)
+|+||+|+||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++.+. ++++ +|||
T Consensus 310 -----~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~~--------~~~~---~vst 373 (658)
T TIGR01342 310 -----EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAPA--------SDGV---SLRS 373 (658)
T ss_pred -----CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCCC--------CCcE---EEEc
Confidence 89999999999999999999999999999999999999999999999999965432 2443 7999
Q ss_pred cCCCCCCCCCCccCCceecCHHHHHHHHHcccccccCCCCCcccCCCCceeccccC-CCChHHHHHHhhhccCchhhhhh
Q 002715 527 GNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI-WPSSEEVAHVVQKSVLPDMFKAT 605 (889)
Q Consensus 527 ~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~d~-wP~~~ei~~~~~~~~~~~~f~~~ 605 (889)
+||||+||||+..+.+|||||++||||||+|+| .|+.. ++. .+| |+ ||+.++ |+.|...
T Consensus 374 ~NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i-~dp~~--l~~-~~g------~~~~p~~~~----------p~~~~~~ 433 (658)
T TIGR01342 374 FNRNFEGRAGIEDAKVYLASPETATAAAIAGEI-IDPRD--LAD-DEG------DLEAIGFEM----------GEKFPGG 433 (658)
T ss_pred cCCCCCccCCCCCCeEEECCHHHHHHHHHcCCc-CCHHH--hcc-ccC------cccCCCCCC----------chhhccc
Confidence 999999999998889999999999999999999 45542 332 234 44 886652 4556555
Q ss_pred cccccCCCcccccccC---CCCCccccCCCCccccCCCCCccCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCC
Q 002715 606 YEAITKGNPMWNQLSV---PSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKD 682 (889)
Q Consensus 606 y~~i~~~~~~w~~l~~---~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPAG~i~~~ 682 (889)
|...+ |+.++. ++.+++. |+||++||+|++++ .+|++ |++.++|||||||||||||.
T Consensus 434 ~~~~~-----~~~~~~~~~~~~~~~~----~p~i~~~p~~~~~~------~~i~g-rv~~~~gDnI~TD~I~Pa~~---- 493 (658)
T TIGR01342 434 YDAAD-----IDIIPKEEREDDDIIK----GPNIKPLPEFDPLG------ADIEG-ETALIMEDNITTDHIIPAGA---- 493 (658)
T ss_pred ccccc-----cccCCCCCCCCcceee----CCCCCCCCCCCCCc------cccCc-eEEEEcCCCCChhcCCCCCc----
Confidence 55443 766654 4444553 89999999998774 45777 99999999999999999874
Q ss_pred ChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCccchhhhHHHHHHhcCCceEE
Q 002715 683 SPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVI 762 (889)
Q Consensus 683 s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~II 762 (889)
.||.+ |+|.+.+.+.+|... +++ +.+++++|++.+.++||
T Consensus 494 ----~~l~~--------------r~~~~~l~~~~~~~~-------------------~p~---f~~~~~~~~~~~~~~ii 533 (658)
T TIGR01342 494 ----DILKF--------------RSNIEAISEFTLHRI-------------------DDE---FAERAKAADEKGKAGII 533 (658)
T ss_pred ----ccccc--------------CCCHHHHhhheeeCC-------------------Cch---HHHHhhcccccCCceEE
Confidence 35532 678888777777532 111 23678899999999999
Q ss_pred EeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCeEEEEe--CCCCcccC
Q 002715 763 LAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID--LPSSVSEI 840 (889)
Q Consensus 763 VAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I~--~~~~~~~l 840 (889)
|||+||||||||||||+++++|||+||||+||+|||||||+|+|||||+|+++++++.+.. +++++|+ +.+ .+
T Consensus 534 VaG~nfG~GSSREhAa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~d~~~~~~i~~--Gd~l~id~~l~~---~~ 608 (658)
T TIGR01342 534 IAGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYAKFEL--GDDIEIPDDLAA---AL 608 (658)
T ss_pred EcCCcCCCCccHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcCcceEEecChhhHHHhCC--CCEEEECchhhh---hc
Confidence 9999999999999999999999999999999999999999999999999998888887654 6778887 554 47
Q ss_pred CCCcEEEEE-cCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 002715 841 RPGQDVRVV-TDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 886 (889)
Q Consensus 841 ~~g~~v~v~-~~~g~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~ 886 (889)
.||++..+. ..+|.++.+...+ ++.|++|+++||||||++++...
T Consensus 609 ~~g~~~~i~~~~~g~~~~~~~~l-~~~e~ei~~aGGlln~~~~~~~~ 654 (658)
T TIGR01342 609 ADGEDEFTINKNDDEEALATLDA-SEREKEILAAGGKLNLIKNKHRE 654 (658)
T ss_pred CCCCceEEEEecCCeEEEEeCCC-CHHHHHHHHcCCHHHHHHHhhcc
Confidence 788654443 3466666555433 89999999999999999997653
No 12
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=2.7e-145 Score=1272.37 Aligned_cols=662 Identities=23% Similarity=0.344 Sum_probs=503.0
Q ss_pred HHHHHHHHhhhc-----CC--CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCc
Q 002715 50 SKDVEKIIDWET-----TS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQ 122 (889)
Q Consensus 50 ~~~ie~il~~~~-----~~--~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~ 122 (889)
+|++|||++.|. +. .+|.+|.++||++|+||.|+++++ +|. ++|. +...+|.+ +++++||++|
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~~v~~G~~i~i~vD~~l~hD~t~p~~~-~~~-------~~g~-~~V~~p~~-~v~~~DH~v~ 71 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL-KFM-------GIGA-SKIHNPDQ-IVMTLDHDIQ 71 (712)
T ss_pred CCHHHHHHHHhcccccCCcccCCCCEEEEecCEEEEEeccHHHHH-HHH-------HcCC-CccCCCCC-EEEEcCCCCC
Confidence 678999999986 32 256789999999999999999864 343 3576 45677764 6789999999
Q ss_pred cCccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccCC-eeeecCCCC
Q 002715 123 VDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 201 (889)
Q Consensus 123 ~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT 201 (889)
..... .+..++..++|+| +| +++|+|||+||||||++| +|+++|+ ++|||||||
T Consensus 72 ~~~~~--~~~~~~~l~~fAk-------------k~-Gi~f~~~g~GI~Hqv~~E---------~g~a~PG~~ivGsDSHT 126 (712)
T TIGR00139 72 NKSDK--NLKKYKNIEEFAK-------------KH-GIDFYPAGRGIGHQIMIE---------EGFAFPGNLAVASDSHS 126 (712)
T ss_pred CCCHH--HHHHHHHHHHHHH-------------Hh-CCeEECCCCCeEeEeecc---------cCcccCCeEEEccCcCc
Confidence 97532 2223333333333 33 578899999999999999 8999996 579999999
Q ss_pred cccCcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEec--Cccc
Q 002715 202 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYG--EGMS 279 (889)
Q Consensus 202 ~~~GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G--~gv~ 279 (889)
||+||||+||||||++|++++|+||++|+++||+|+|+|+|+|++||++|||||+|+++|+++|++||+|||+| +||+
T Consensus 127 ~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~ 206 (712)
T TIGR00139 127 NMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLN 206 (712)
T ss_pred CccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccChhhhhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcch--------HHHHHHHHH---HhhhcccCCCCCCCCcc
Q 002715 280 ELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDT--------VSMIESYLR---ANKMFVDYSEPQSERVY 348 (889)
Q Consensus 280 ~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~--------~~~~~~y~~---~~~l~~~~~~~D~~a~Y 348 (889)
+||+++|+|||||++|+|||+|+||+|++|++||+.++|.... ....++|.+ +...|. +..+|++|.|
T Consensus 207 ~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~l~aD~~A~Y 285 (712)
T TIGR00139 207 ALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEI-PLKADKDAHY 285 (712)
T ss_pred cCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhc-cCCCCCCCCE
Confidence 9999999999999999999999999999999999998764110 011112211 111122 2368999999
Q ss_pred cEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEee
Q 002715 349 SSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAIT 428 (889)
Q Consensus 349 ~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~Ig 428 (889)
+++++||||+|+|+||+|++|++++||+++... | -+|++||||
T Consensus 286 ~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------------------------~-------~~Id~~~IG 328 (712)
T TIGR00139 286 AKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------------------------D-------IKIDKAYLV 328 (712)
T ss_pred EEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------------------------C-------ceeeeEEEe
Confidence 999999999999999999999999999987420 0 136799999
Q ss_pred cCCCCCChhHHHHHHHHHHHHHhcC---CccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCC
Q 002715 429 SCTNTSNPSVMLGAALVAKKACELG---LEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGD 505 (889)
Q Consensus 429 SCTN~s~~dl~~aA~lla~~A~~~G---~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~ 505 (889)
||||+|++||+.||.+|.++|+++| +||+|+||++|+|||++|+++|+++|++++|.++||.|.+|||++|||++++
T Consensus 329 SCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~~~~ 408 (712)
T TIGR00139 329 SCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAG 408 (712)
T ss_pred cCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCC
Confidence 9999999999999999988888763 8999999999999999999999999999999999999999999999999988
Q ss_pred CChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHHHHcccccccCCCCCcccCCCCceeccccCCCC
Q 002715 506 IDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPS 585 (889)
Q Consensus 506 l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~d~wP~ 585 (889)
++++ +++ +|||+||||+||||+..+.+|||||++||||||+|+|+ ||..+.. + +-||.
T Consensus 409 ~~~~-------gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It-----dPr~~~~---~----~~~~~ 466 (712)
T TIGR00139 409 LLEP-------GEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS-----GPAEVLS---P----EGWTE 466 (712)
T ss_pred CCCC-------CCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC-----CHHHHhc---c----ccccc
Confidence 7544 554 78999999999999888899999999999999999994 5543210 0 00221
Q ss_pred h--H---HHHHHhhhccCchhhhhhcccc---cCCCcccccccCCCCCccccCCCCccccC--CCCCccCCCCCCCCCcc
Q 002715 586 S--E---EVAHVVQKSVLPDMFKATYEAI---TKGNPMWNQLSVPSGTLYAWDPKSTYIHE--PPYFKDMTMSPPGPHGV 655 (889)
Q Consensus 586 ~--~---ei~~~~~~~~~~~~f~~~y~~i---~~~~~~w~~l~~~~~~~~~w~~~styi~~--pp~f~~~~~~~~~~~~i 655 (889)
. . .+.......++.+++...-..+ ....+.-.+...+ ++.-+.+ .|.++++ ++.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-------~~~ 530 (712)
T TIGR00139 467 IIFGEGDGIKEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAP---------AQEESEQGLTEILEGF-------PEE 530 (712)
T ss_pred ccccccccccCcccccCcHHHHhhhhhhccCccccchhccccccc---------ccchhccCCCCcCCCC-------Cce
Confidence 0 0 0000001112233331110000 0000000011111 1111111 2222222 233
Q ss_pred ccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCce
Q 002715 656 KGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKT 735 (889)
Q Consensus 656 ~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t 735 (889)
...+++.+.|||||||||+| ++||....+++ |.|.+..|.+.+
T Consensus 531 i~g~v~~~~gdnI~TD~I~P----------~~~~~~~~~~~-------------~~l~~~~~~~~d-------------- 573 (712)
T TIGR00139 531 FSGELVFCDADNINTDGIYP----------GKYTYQDDVPK-------------EKMAQVCMENYD-------------- 573 (712)
T ss_pred EEEEEEEcCCCCCchhhccc----------hhhcccCCCCH-------------HHHHHhhccCCC--------------
Confidence 44489999999999999999 47884322333 345566665432
Q ss_pred eecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCc
Q 002715 736 IHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPG 815 (889)
Q Consensus 736 ~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~ 815 (889)
| +.+.+++. +.|||||+|||||||||||+++++.+||+||||+||+|||+||++|+|||||+|++
T Consensus 574 ---p--------~f~~~~~~---g~iiVaG~NfG~GSSREhA~~al~~~Gi~~ViA~SFarIf~rN~iN~Gl~~l~~~~- 638 (712)
T TIGR00139 574 ---A--------EFRTKAHE---GDILVSGFNFGCGSSREQAATAILAKGINLVVSGSFGNIFSRNSINNALLGLEIPA- 638 (712)
T ss_pred ---c--------chhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCCcEEEEchHHHHHHhHHHhcCCceEEchh-
Confidence 1 12334443 47999999999999999999999999999999999999999999999999999985
Q ss_pred cchhhcc---------C--CCCeEEEEeCCCCcccCCCCcEEEEEcCC----CEEEEEEecCCCHHHHHHHHhcCHHHHH
Q 002715 816 EDAETHG---------L--TGHERYTIDLPSSVSEIRPGQDVRVVTDS----GKSFTCVIRFDTEVELAYFDHGGILQYV 880 (889)
Q Consensus 816 ~~~~~l~---------l--~g~e~~~I~~~~~~~~l~~g~~v~v~~~~----g~~~~~~~~~~t~~e~~~~~aGGiL~yv 880 (889)
..+.|. + ..++.++||+..+ .|++ ..+ ++++.+++..-++..++++++|||++|+
T Consensus 639 -~~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~g--------~i~~-t~g~~~~~~~~~~~~~~~p~~~~eii~~GGl~~~~ 708 (712)
T TIGR00139 639 -LIKKLREKFGGADKELTRRTGWFLKWDVADA--------KIEV-QEGSLDGGPILEHKVGELGKNLQEIIAKGGLEGWV 708 (712)
T ss_pred -HHHHHHhhhcccccccccCCCCEEEEEccCC--------EEEE-CCCcccccceeEEEcCCCCHHHHHHHHcCCHHHHH
Confidence 222222 1 2578889998763 4444 222 2334444433478999999999999999
Q ss_pred HHHH
Q 002715 881 IRNL 884 (889)
Q Consensus 881 ~~~~ 884 (889)
++++
T Consensus 709 k~~~ 712 (712)
T TIGR00139 709 KNAI 712 (712)
T ss_pred HhcC
Confidence 9874
No 13
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=3.2e-143 Score=1260.39 Aligned_cols=684 Identities=21% Similarity=0.268 Sum_probs=514.7
Q ss_pred cHHHHHHHHhhhcCCCCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCcccc
Q 002715 49 KSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 128 (889)
Q Consensus 49 ~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~ 128 (889)
++|++||||+.|.....+..|.+++|++++||.|+++++..|.+ +|.+ ++ | +|+.+++||++|....+.
T Consensus 34 ~~TlaeKIL~~h~~~~~g~~v~~~vD~~~~~D~t~~~~~~~f~~-------~G~~--~v-p-~~~v~~~DH~~~~~~g~~ 102 (751)
T PRK11413 34 KGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIIQTAKA-------SGME--RF-P-LPYVLTNCHNSLCAVGGT 102 (751)
T ss_pred hCCHHHHHHHHhhCCCCCCEEEEEcceeeeehhhHHHHHHHHHH-------cCCC--cC-C-CCEEEECCCCCcCCCCCC
Confidence 56899999999987666667999999999999999988876654 5764 45 4 689999999999875333
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccC-CeeeecCCCCcccCcc
Q 002715 129 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGL 207 (889)
Q Consensus 129 ~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~Gal 207 (889)
. |.+.|.|++...++| ++.|+|||+|||||+++|+|+ .| +++|||||||| +|||
T Consensus 103 ~-------------n~~~~~~~~~~a~k~-Gi~f~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~-~Gal 157 (751)
T PRK11413 103 I-------------NEDDHVFGLSAAQKY-GGIFVPPHIAVIHQYMREMMA----------GGGKMILGSDSHTR-YGAL 157 (751)
T ss_pred c-------------cHHHHHHHHHHHHHc-CCcEECCCCCeECcCchhhcc----------CCCcEEEeeCcCcc-cchh
Confidence 2 223444444444455 457899999999999999554 56 58999999996 8999
Q ss_pred cceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCc-ceeEEEEecCcccccChhhh
Q 002715 208 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV-VGMFVEFYGEGMSELSLADR 286 (889)
Q Consensus 208 G~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~-~gk~vEf~G~gv~~LS~~~R 286 (889)
|+||||||++|++.+|+|+++|+++||+|+|+|+|+|++||+||||||+|+++|+++|+ +||+|||+||||++||+++|
T Consensus 158 G~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R 237 (751)
T PRK11413 158 GTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFR 237 (751)
T ss_pred hhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred hhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCC
Q 002715 287 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGP 366 (889)
Q Consensus 287 ~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P 366 (889)
||||||++|+|||+||||+|++|++||+.++|.+++. . ..+|++|.|+++++||||+|+|+||+|
T Consensus 238 ~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~-----------~----l~~D~~A~Yd~~ieiDLs~leP~VA~P 302 (751)
T PRK11413 238 NGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYC-----------E----LNPQPMAYYDGCISVDLSAIKPMIALP 302 (751)
T ss_pred hhhhhcccccCceEEEecCcHHHHHHHHhCCChhhce-----------e----ccCCCCCCeeEEEEEEcccceeeecCC
Confidence 9999999999999999999999999999999876431 1 157999999999999999999999999
Q ss_pred CCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCccccc--CccEEEEEeecCCCCCChhHHHHHHH
Q 002715 367 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLR--HGDVVIAAITSCTNTSNPSVMLGAAL 444 (889)
Q Consensus 367 ~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~--~g~V~~a~IgSCTN~s~~dl~~aA~l 444 (889)
++|+|++||+|+.+++.++++.. ..++..+ ......++.. ..|. .-+|+|||||||||||++||+.||++
T Consensus 303 ~~Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~---~ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~I 374 (751)
T PRK11413 303 FHPSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSLL---DKIENGRLKVQQGIIAGCSGGNYENVIAAANA 374 (751)
T ss_pred CChhhCcChhhcccchhhhcchh-hhhhhhh----hhhhcccccc---ccccCCCcEeeeEEEecCCCCCHHHHHHHHHH
Confidence 99999999999998888776542 1111110 0000111111 0122 23689999999999999999999999
Q ss_pred HHHHHHhcCCccC-CceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEE
Q 002715 445 VAKKACELGLEVK-PWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAA 523 (889)
Q Consensus 445 la~~A~~~G~kv~-~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~ 523 (889)
| +|++|+ ++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|+++. +. ++++ |
T Consensus 375 L------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~-~~-------~ge~---~ 437 (751)
T PRK11413 375 L------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDT-PA-------NNGL---S 437 (751)
T ss_pred h------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCc-CC-------CCCE---E
Confidence 9 999998 569999999999999999999999999999999999999999998644 32 3554 7
Q ss_pred eeccCCCCCCCCCCccCC-----ceecCHHHHHHHHHc-ccccccCCCCCcccCCCCceeccccCCCChHHHHHHhhhcc
Q 002715 524 VLSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSV 597 (889)
Q Consensus 524 vsS~NRNF~GR~g~~~~~-----~yLaSP~~VaA~Ala-G~i~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~ 597 (889)
|+|+||||+||||+..++ +||+||+++||+|+. |+|+ +|...+. ++ +.. .+.+
T Consensus 438 isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~---~~p---~~~~ 496 (751)
T PRK11413 438 IRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD---NVP---EYAF 496 (751)
T ss_pred EeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc---cCC---Cccc
Confidence 899999999999998876 677779989999998 6995 4443320 11 111 1234
Q ss_pred Cchhhh-hhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccCCCCCCCCCccccceEEeecCCCCC-cCcccC
Q 002715 598 LPDMFK-ATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT-TDHISP 675 (889)
Q Consensus 598 ~~~~f~-~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~it-TDhIsP 675 (889)
+..+|. ..|...... ..+.-+..-|.|.+++... ++.+-...+|++|+||+|| ||||||
T Consensus 497 ~~~~y~~~~~~~~~~~------------------~~~~~~~~gPni~~~p~~~-~l~~~~~~kv~~k~~D~itTTD~i~p 557 (751)
T PRK11413 497 DVTPYKNRVYQGFGKG------------------ATQQPLIYGPNIKDWPEMG-ALTDNILLKVCSKILDPVTTTDELIP 557 (751)
T ss_pred CccccccccccCCCCC------------------CCcceEEeCcCCCCCCCCC-CCCCcEEEEEEEEeCCCCcccccccc
Confidence 444443 222211111 1222333344444443322 2233345689999999997 999999
Q ss_pred CCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCC---ceeecCCC---ccchhhhH
Q 002715 676 AGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP---KTIHIPTG---EKLSVFDA 749 (889)
Q Consensus 676 AG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~---~t~~~p~~---~~~~i~~~ 749 (889)
|| +||.+ |||.+-+...+|.. ..|.+.. +... .......| ++..+|+.
T Consensus 558 aG---------~~l~~--------------Rsn~~~is~~~~~~--~d~~~~~-ra~~~~~~~~~~~~g~~~~~~~~~~~ 611 (751)
T PRK11413 558 SG---------ETSSY--------------RSNPLGLAEFTLSR--RDPGYVG-RSKAVAELENQRLAGNVSELTEVFAR 611 (751)
T ss_pred CC---------Ccccc--------------ccCHHHHhhhhccc--cChhhHH-HHHHHhhhhhhhhcCCcHHHHHHHHh
Confidence 98 46664 56776666666643 2233220 0000 00000111 22223322
Q ss_pred HH--------HHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhH-HhhhhccCcccceecCCccchhh
Q 002715 750 AM--------RYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERI-HRSNLVGMGIIPLCFKPGEDAET 820 (889)
Q Consensus 750 a~--------~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRI-h~~Nli~~GilpL~f~~~~~~~~ 820 (889)
+. .|++.|.++||++ .||||||||||||+++++|||+||||+||+|| ||+||||+|||||+|.+..
T Consensus 612 ~~~~~~~~~~~~~~~~~~~iv~~-~nyG~GSSREhAAla~r~LGi~AVIAkSFARIf~RsNlIN~GilpL~f~~~~---- 686 (751)
T PRK11413 612 IKQIAGQEHIDPLQTEIGSMVYA-VKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPFQMAEEP---- 686 (751)
T ss_pred hhhccccccccccccCceEEEEE-eCCCCCccHHHHHHHHHHhCceEEEEeeehHHHHhhhhhhcCccceecCchh----
Confidence 21 1256676655555 99999999999999999999999999999999 6669999999999998643
Q ss_pred ccCCCCeEEEEeCCCCcccCCCC-cEE--EEEcCCC--EEEEEEecCCCHHHHHHHHhcCHHHHHHH
Q 002715 821 HGLTGHERYTIDLPSSVSEIRPG-QDV--RVVTDSG--KSFTCVIRFDTEVELAYFDHGGILQYVIR 882 (889)
Q Consensus 821 l~l~g~e~~~I~~~~~~~~l~~g-~~v--~v~~~~g--~~~~~~~~~~t~~e~~~~~aGGiL~yv~~ 882 (889)
.+..++.++|+.... .+..+ ..+ .+...+| +.+.+.+.--++.|++||++||+|||+++
T Consensus 687 -~i~~GD~l~id~~~~--~l~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~eil~aGGllny~k~ 750 (751)
T PRK11413 687 -TFEVGDYIYIPGIRA--ALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGCLINYNKN 750 (751)
T ss_pred -hCCCCCEEEEechhh--hhhcCCCceeEEEEeCCCceeeEEEEeCCCCHHHHHHHHcCCHHHHhhc
Confidence 356788899985432 23322 223 3333443 44555542238999999999999999976
No 14
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-137 Score=1143.38 Aligned_cols=704 Identities=31% Similarity=0.478 Sum_probs=579.1
Q ss_pred cHHHHHHHHhhhcCCC-------CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCC
Q 002715 49 KSKDVEKIIDWETTSP-------KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSV 121 (889)
Q Consensus 49 ~~~~ie~il~~~~~~~-------~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v 121 (889)
..+..|||+.-+.... .+..+.++||||+|||.|+.|++++|.+ .|... + .+|..++|||.+
T Consensus 58 p~tl~EKIlyshl~~p~~~~i~Rg~~Yl~lrPdrva~qDasaqma~LqFms-------~Gl~k--v--avPstIhCdhli 126 (778)
T KOG0453|consen 58 PLTLTEKILYSHLDNPPEQKIVRGGSYLKLRPDRVAMQDASAQMALLQFMS-------SGLKK--V--AVPSTIHCDHLI 126 (778)
T ss_pred CchhhHHHHHhhccCCcccceecccceEEEcccceecccchhhHHHHHHHh-------cCccc--c--cCCceEEeccee
Confidence 4688899987763221 2347999999999999999999999853 35543 2 246789999999
Q ss_pred ccCccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccCC-eeeecCCC
Q 002715 122 QVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSH 200 (889)
Q Consensus 122 ~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSH 200 (889)
.+...+..| +.+.-+.|.|.|.||..+.++| |+.||+||+||+||++|| + ++||+ ++||||||
T Consensus 127 ~a~~gg~~D-----l~~a~~~Nkevydfl~saakky-gi~Fw~pGsGIiHQIvlE---------n-YAfPG~m~igTDSH 190 (778)
T KOG0453|consen 127 EAQVGGDKD-----LQRASDLNKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLE---------N-YAFPGLMMIGTDSH 190 (778)
T ss_pred eeccCCcch-----hhhhhhhhHHHHHHHHHHHHhc-CCCccCCCCceeeeeeee---------c-ccCCcceEEeccCC
Confidence 887766554 3456679999999999998776 799999999999999999 3 66886 68999999
Q ss_pred CcccCcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccc
Q 002715 201 TTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSE 280 (889)
Q Consensus 201 T~~~GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~ 280 (889)
|+++||||+|++||||+||+++|+++||.+++|+++||+|+|+|+.|+++|||||++.+.|..+|++|++||||||||.+
T Consensus 191 Tpn~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~s 270 (778)
T KOG0453|consen 191 TPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNS 270 (778)
T ss_pred CCCCCccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccce
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcc
Q 002715 281 LSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVV 360 (889)
Q Consensus 281 LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~ve 360 (889)
||++.|+|||||++|.|||+|+||.|+.+++||+.|||.+. .+..++|.++ + ..+|++|.|+++|+||||+|+
T Consensus 271 lSctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~i-a~~a~~~~~~--~----l~AD~~a~Ydk~ieIdLstL~ 343 (778)
T KOG0453|consen 271 LSCTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNEI-AREARETLDA--I----LAADKGAHYDKIIEIDLSTLE 343 (778)
T ss_pred eccccceeeccccccccccccccCCCHHHHHHHHHhCcccc-hhhhHHhhhh--c----ccCCCCCCcceEEEEEhhhcc
Confidence 99999999999999999999999999999999999999974 2344555554 2 258999999999999999999
Q ss_pred cCccCCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHH
Q 002715 361 PCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVML 440 (889)
Q Consensus 361 P~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~ 440 (889)
|+|.||++|+-..|++++.+..+ -+||+.. |..++||||||+||+|+-.
T Consensus 344 P~vnGPfTpdl~~pvskl~e~~~--------------------------kn~wp~~-----i~~gligSCTNSsyeDm~r 392 (778)
T KOG0453|consen 344 PHVNGPFTPDLSTPVSKLGENSE--------------------------KNGWPIK-----IKVGLIGSCTNSSYEDMSR 392 (778)
T ss_pred cccCCCCCccccChHHHHhHHhh--------------------------hcCCcee-----eeeeEEEeecCccHHHHHH
Confidence 99999999999999999875321 1455543 4578999999999999888
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceE
Q 002715 441 GAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIV 520 (889)
Q Consensus 441 aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~ 520 (889)
+|.++ ++|..+|+| |.|-+.|+|||.+|+..++|.|+++.|+++|+.+++.+||||||+|..-+ |++||.
T Consensus 393 aa~iv-~~a~~~glk--~~v~F~VtpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~d------vk~GE~- 462 (778)
T KOG0453|consen 393 AADIV-KQAKGKGLK--PKVPFYVTPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRKD------IKKGEK- 462 (778)
T ss_pred HHHHH-HHHHhcCCC--CCcceEeccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCccccccccc------ccCCCc-
Confidence 88765 888877765 55999999999999999999999999999999999999999999986521 445665
Q ss_pred EEEeeccCCCCCCCCCCcc-CCceecCHHHHHHHHHcccccccCCCCCcccCCCCceeccccCCCChHHHHHHhhhccCc
Q 002715 521 AAAVLSGNRNFEGRVHPLT-RANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLP 599 (889)
Q Consensus 521 ~~~vsS~NRNF~GR~g~~~-~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~ 599 (889)
.+.|+|.||||.||++.+. ...||+||++|+|+||+|++.+|+++|.+ ..+||+.+.|+. |..+|+.+ +.++|
T Consensus 463 ntivts~NRNFtgRnd~np~t~afltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~ 536 (778)
T KOG0453|consen 463 NTIVTSYNRNFTGRNDANPATHAFLTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDP 536 (778)
T ss_pred CceeeeecccccccCCCCcchhhcccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCC
Confidence 2458999999999998665 45799999999999999999999999998 568899998875 77777644 23333
Q ss_pred hhhhhhcccccCCCcccccccCCC-CCccccCCCCccccCCCCCccCCCCCCCCCccccceEEeecCCCCCcCcccCCCC
Q 002715 600 DMFKATYEAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGS 678 (889)
Q Consensus 600 ~~f~~~y~~i~~~~~~w~~l~~~~-~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPAG~ 678 (889)
. ...|+. -+.+. ..-+.-|+.|..++....|+. +.-+|+++..+|+++..+|||||||-||
T Consensus 537 g--~~ty~a----------p~~~~~~~~v~v~p~s~rlqlLepF~~-----w~gkd~edl~ilikv~gkCttDhIsaaG- 598 (778)
T KOG0453|consen 537 G--QDTYQA----------PPSSSSVVEVDVDPTSDRLQLLEPFDK-----WDGKDLEDLKILIKVKGKCTTDHISAAG- 598 (778)
T ss_pred C--cccccC----------CCCCCCcceeecCCcccchhhcCCCCc-----ccccccccceEEEEEecccCccccccCC-
Confidence 1 122321 11111 134566889988887777753 4457899999999999999999999998
Q ss_pred CCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCccchhhhHHHHHHhcCC
Q 002715 679 IHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGH 758 (889)
Q Consensus 679 i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~p~~~~~~i~~~a~~y~~~g~ 758 (889)
.||+++|+-..-.|.+ | +...|+-. + +-..-....+||...+.+.+..||+.|+
T Consensus 599 --------pwlkY~Ghl~nisnn~---------~-------igain~En-~-e~n~~~n~~~ge~~~vp~~~~~yk~~g~ 652 (778)
T KOG0453|consen 599 --------PWLKYRGHLENISNND---------L-------IGAINKEN-G-EANCVKNYLTGEFGTVPDTARDYKKHGI 652 (778)
T ss_pred --------cceeccchhhhcccch---------h-------hhhcchhh-h-hhhhhhhccccccCCcCchhhhHHhcCc
Confidence 4999988654433322 0 01111110 1 1111223347888889999999999999
Q ss_pred ceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCeEEEEeCCCCcc
Q 002715 759 DTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVS 838 (889)
Q Consensus 759 ~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I~~~~~~~ 838 (889)
+||+|++.|||.||||||||..|+.||+++||.+||+|||.+||+++|+|||+|.++.+|+++. ..+.+++.- +.
T Consensus 653 ~wvvv~~~NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydKi~--~~d~~~~~~---L~ 727 (778)
T KOG0453|consen 653 RWVVVGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDKIR--PADKVSIKG---LT 727 (778)
T ss_pred eeEEEcccccCCCcchhhhhhchhhcCCcEEEeehhHHHHHhhhhhcceeeeeccCHHHhhhcC--hhcccchhh---hh
Confidence 9999999999999999999999999999999999999999999999999999999999999864 344444432 33
Q ss_pred cCCCCcEEEE--EcCCCEEEEEEecCC-CHHHHHHHHhcCHHHHHHH
Q 002715 839 EIRPGQDVRV--VTDSGKSFTCVIRFD-TEVELAYFDHGGILQYVIR 882 (889)
Q Consensus 839 ~l~~g~~v~v--~~~~g~~~~~~~~~~-t~~e~~~~~aGGiL~yv~~ 882 (889)
++.||.++++ +..+|++++.++.+. +..|++||++|..|+++++
T Consensus 728 ~~~~gkp~t~~vt~~dg~~~~~kl~ht~n~~Qi~~fkaGsaln~~~e 774 (778)
T KOG0453|consen 728 RRTPGKPLTVVVTKKDGKEVEIKLNHTGNKLQIEWFKAGSALNVMKE 774 (778)
T ss_pred hhcCCCceeEEEECCCCcEEEEecccccchhhhHhhhcchHHHHHHH
Confidence 6678876655 456888888887654 7899999999999998765
No 15
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=9e-131 Score=1085.56 Aligned_cols=400 Identities=76% Similarity=1.218 Sum_probs=388.7
Q ss_pred eeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002715 75 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 154 (889)
Q Consensus 75 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~ 154 (889)
||+|||+||+|+++|||||||+++++|+||+++||.+|++|++||++|++..+..++..+|+..+++||.|||.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred cccccccccCCCCceeccccccccceeeec----CCCcccCCeeeecCCCCcccCcccceeccCCHHHHHHHHcCCceEe
Q 002715 155 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFN----TNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSM 230 (889)
Q Consensus 155 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~----~~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~~~~~ 230 (889)
++|.|++|+|||+||||||++|+||++++. ++|+++|+++|||||||||+||||+||||||++|++++|+||++|+
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCcccc
Confidence 999999999999999999999999999984 4689999999999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEEeCChHHH
Q 002715 231 VLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTL 310 (889)
Q Consensus 231 ~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~ 310 (889)
++||+|+|+|+|+|++|||+|||||+|++.|+.+|++|++|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 161 ~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred CCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhcccc
Q 002715 311 QYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRV 390 (889)
Q Consensus 311 ~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~ 390 (889)
+++++||||+|||+||+|++|+|++||.
T Consensus 237 --------------------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~-------------- 264 (404)
T cd01586 237 --------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLH-------------- 264 (404)
T ss_pred --------------------------------------ceEEEEEcccceeeecCCCCcccccCcC--------------
Confidence 4679999999999999999999999982
Q ss_pred cCCCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHH
Q 002715 391 GFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGV 470 (889)
Q Consensus 391 ~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~ 470 (889)
++|++||||||||||+||++.||++|+|||++||+||+||||++|+|||++
T Consensus 265 -----------------------------~~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~ 315 (404)
T cd01586 265 -----------------------------GSVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRV 315 (404)
T ss_pred -----------------------------CcEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHH
Confidence 136799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHH
Q 002715 471 VTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLV 550 (889)
Q Consensus 471 V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~V 550 (889)
|+++|+++||+++|.++||.|.+|||++|+|+++++.+.+++.+.+||+++++|||+||||+||||+..+++|||||++|
T Consensus 316 V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~v 395 (404)
T cd01586 316 VTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLV 395 (404)
T ss_pred HHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHH
Confidence 99999999999999999999999999999999999988888889999998889999999999999999999999999999
Q ss_pred HHHHHcccc
Q 002715 551 VAYALAGSV 559 (889)
Q Consensus 551 aA~AlaG~i 559 (889)
||+||+|+|
T Consensus 396 AAsAi~G~i 404 (404)
T cd01586 396 VAYALAGTV 404 (404)
T ss_pred HHHHhcccC
Confidence 999999986
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=7.7e-122 Score=1040.45 Aligned_cols=453 Identities=25% Similarity=0.366 Sum_probs=397.7
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCcc-
Q 002715 49 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA- 126 (889)
Q Consensus 49 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~- 126 (889)
.+|++|||++.|.... .+..+.++|||+|+||+|+++++. +|| ++|. ..++|. ++++++||++|++..
T Consensus 2 ~~Tl~eKI~~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~---~~~----~~g~--~v~~p~-~~~~~~DH~vp~~~~~ 71 (465)
T TIGR00170 2 PRTLYEKLFDAHIVYEAEGETPLLYIDRHLIHEVTSPQAFE---GLR----QAGR--KVRRPQ-KTFATMDHNIPTQNRD 71 (465)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeeeeeecccchHHHHH---HHH----HcCC--CcCCCc-CEEEEeCCCCCCCCcc
Confidence 3689999999997643 566788999999999999999974 333 3453 355665 689999999999763
Q ss_pred -ccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccC-CeeeecCCCCccc
Q 002715 127 -RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 204 (889)
Q Consensus 127 -~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 204 (889)
+..++...|+.+++++|.+||.+ + .+++.|||+||||||++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi------~--~~~v~~p~~GI~Hqv~~E---------~g~~~PG~~ivgtDSHT~t~ 134 (465)
T TIGR00170 72 FNIKDEVAKIQVTELEKNCKEFGV------R--LFDLHSVDQGIVHVMGPE---------QGLTLPGMTIVCGDSHTSTH 134 (465)
T ss_pred ccccCHHHHHHHHHHHHHHHHhCC------e--eeccCCCCCCEeCeEccc---------cCcccCCceEEecCCCcccc
Confidence 46667888999999999999886 2 346789999999999999 899999 6899999999999
Q ss_pred CcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChh
Q 002715 205 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 284 (889)
Q Consensus 205 GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~ 284 (889)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+|+||++||++
T Consensus 135 GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~ 214 (465)
T TIGR00170 135 GAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSME 214 (465)
T ss_pred ccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCcc
Q 002715 285 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 364 (889)
Q Consensus 285 ~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA 364 (889)
+|||||||++|+|||+||||+|++|++||+.+++.+. .++|.+++.+|+.. .+|++|.|+++++||||+|+|+||
T Consensus 215 ~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~~~~~~~~l-~~d~~a~Y~~~i~iDls~leP~Va 289 (465)
T TIGR00170 215 GRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDKAVAYWKTL-KTDEGAVFDTVITLEANDISPQVT 289 (465)
T ss_pred HhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHHHHHhhhhc-cCCCCCceeEEEEEEcccceeeec
Confidence 9999999999999999999999999999998877553 36788888899754 689999999999999999999999
Q ss_pred CCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcc--cccCccEEEEEeecCCCCCChhHHHHH
Q 002715 365 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVIAAITSCTNTSNPSVMLGA 442 (889)
Q Consensus 365 ~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IgSCTN~s~~dl~~aA 442 (889)
+|++|+|++||+|+.+++....+.. ++.....+++|+|... .+.+++|++||||||||||++||+.||
T Consensus 290 ~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA 359 (465)
T TIGR00170 290 WGTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAA 359 (465)
T ss_pred CCCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHH
Confidence 9999999999999876655433211 1111122334444322 366889999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEE
Q 002715 443 ALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAA 522 (889)
Q Consensus 443 ~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~ 522 (889)
++| ||+||+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++++.++ +++
T Consensus 360 ~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~--- 423 (465)
T TIGR00170 360 AVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDRLPE-------GER--- 423 (465)
T ss_pred HHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---
Confidence 999 9999999999999999999999999999999999999999999999999999988655 454
Q ss_pred EeeccCCCCCCCCCCccCCceecCHHHHHHHHHccccc
Q 002715 523 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 560 (889)
Q Consensus 523 ~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 560 (889)
++||+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 424 ~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 424 CASTSNRNFEGRQGRG-GRTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred EEEecCCCCCCCCCCC-CCEEEcCHHHHHHHHhCceec
Confidence 5799999999999985 467999999999999999994
No 17
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=1.2e-121 Score=1040.21 Aligned_cols=453 Identities=28% Similarity=0.395 Sum_probs=401.9
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccc
Q 002715 49 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 127 (889)
Q Consensus 49 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~ 127 (889)
.+|++|||++.|.... .+.+|.++|||+|+||+|+++++.+|++| |. ..+||.++ ++++||++|++...
T Consensus 3 ~~Tl~eKI~~~h~~~~~~~g~v~~~vD~~~~hD~t~p~a~~~~~~~-------g~--~v~~P~~~-~~~~DH~vp~~~~~ 72 (471)
T PRK12466 3 PRTLYDKLWDSHTVARLDDGHVLLYIDRHLLNEYTSPQAFSGLRAR-------GR--TVRRPDLT-LAVVDHVVPTRPGR 72 (471)
T ss_pred CcCHHHHHHHHhcCCCCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC--cccCCCCe-EEEeCCCCCCCccc
Confidence 4789999999997642 34489999999999999999999998653 43 47889875 58999999998732
Q ss_pred ---cHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccCC-eeeecCCCCcc
Q 002715 128 ---SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTM 203 (889)
Q Consensus 128 ---~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~ 203 (889)
..+....|+.+++++|.+||.+. .+++.+||+|||||+++| +|+++|+ ++|||||||||
T Consensus 73 ~~~~~~~~~~~~~~~~r~~a~~~gi~--------~~~~~~p~~GI~Hqv~~E---------~G~~~PG~~ivg~DSHT~t 135 (471)
T PRK12466 73 DRGITDPGGALQVDYLRENCADFGIR--------LFDVDDPRQGIVHVVAPE---------LGLTLPGMVIVCGDSHTTT 135 (471)
T ss_pred cccccCHHHHHHHHHHHHHHHHcCCe--------eeccCCCCCCEEeEEccc---------cCcccCCceEEccCCCcCC
Confidence 34466788899999999988751 245678999999999999 8999997 69999999999
Q ss_pred cCcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccCh
Q 002715 204 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSL 283 (889)
Q Consensus 204 ~GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~ 283 (889)
+||||+||||||++|++++|+||++|+++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+||||++||+
T Consensus 136 ~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~ 215 (471)
T PRK12466 136 YGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSM 215 (471)
T ss_pred cChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCc
Q 002715 284 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCV 363 (889)
Q Consensus 284 ~~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~v 363 (889)
++|||||||++|+||++||||+|++|++||+.++|.++. ++|.|+++.|+.. .+|++|.|+++++||||+|+|+|
T Consensus 216 ~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~~~~~~~~~-~~D~~a~Y~~~i~iDls~leP~v 290 (471)
T PRK12466 216 EGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDAALAYWRTL-RSDADAVFDREVEIDAADIAPQV 290 (471)
T ss_pred HHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHHHHhhhhcc-cCCCCCceEEEEEEEcccceEee
Confidence 999999999999999999999999999999999998754 4788888888754 68999999999999999999999
Q ss_pred cCCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCccc--ccCccEEEEEeecCCCCCChhHHHH
Q 002715 364 SGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQ--LRHGDVVIAAITSCTNTSNPSVMLG 441 (889)
Q Consensus 364 A~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~--l~~g~V~~a~IgSCTN~s~~dl~~a 441 (889)
|+|++|+|++||+|+.+++.++++.. ++......++|++.... +.+.+|++||||||||||+|||++|
T Consensus 291 a~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~a 360 (471)
T PRK12466 291 TWGTSPDQAVPITGRVPDPAAEADPA----------RRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAA 360 (471)
T ss_pred cCCCChhhceEccccCcChhhhcchh----------hhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHH
Confidence 99999999999999998887765421 11111233455544322 5678999999999999999999999
Q ss_pred HHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEE
Q 002715 442 AALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVA 521 (889)
Q Consensus 442 A~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~ 521 (889)
|++| ||+||+||||++|+|||++|+++|+++||+++|.++||.|.+||||+|+|++++++++ +++
T Consensus 361 A~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~-- 425 (471)
T PRK12466 361 AAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLAP-------GER-- 425 (471)
T ss_pred HHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE--
Confidence 9999 9999999999999999999999999999999999999999999999999999887544 565
Q ss_pred EEeeccCCCCCCCCCCccCCceecCHHHHHHHHHccccc
Q 002715 522 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 560 (889)
Q Consensus 522 ~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 560 (889)
+|||+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 426 -~vsT~NRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~I~ 462 (471)
T PRK12466 426 -CASTTNRNFEGRQGPG-ARTHLMSPAMVAAAAVAGHIT 462 (471)
T ss_pred -EEEecCCCCCCCCCCC-CcEEECCHHHHHHHHhCcEeC
Confidence 7899999999999994 556999999999999999994
No 18
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=1.1e-120 Score=1032.55 Aligned_cols=453 Identities=26% Similarity=0.355 Sum_probs=400.4
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCcc-
Q 002715 49 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA- 126 (889)
Q Consensus 49 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~- 126 (889)
.+|++|||++.|.... .+..|.++|||+++||.|+++++..|. ++|. +.++|.. +.+++||++|++..
T Consensus 2 ~~tl~eKIl~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~~-------~~g~--~v~~p~~-~~~~~DH~v~~~~~~ 71 (466)
T PRK05478 2 GKTLYDKLWDAHVVHEEEDGPDLLYIDRHLVHEVTSPQAFEGLR-------LAGR--KVRRPDL-TFATMDHNVPTTDRD 71 (466)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeccceeecccHHHHHHHHH-------HcCC--CccCCCC-eEEEcCCCCCCCccc
Confidence 3689999999997643 566788999999999999999985442 3464 4677774 77899999999875
Q ss_pred -ccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccC-CeeeecCCCCccc
Q 002715 127 -RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 204 (889)
Q Consensus 127 -~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 204 (889)
+..++...|+.+++++|.+||.|. .+++.+|++|||||+++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi~--------~~~~~~~~~GI~Hqv~~E---------~g~~~PG~~ivGtDSHT~t~ 134 (466)
T PRK05478 72 LPIADPVSRIQVETLEKNCKEFGIT--------LFDLGDPRQGIVHVVGPE---------QGLTLPGMTIVCGDSHTSTH 134 (466)
T ss_pred ccccCHHHHHHHHHHHHHHHHcCCe--------eeccCCCCCCEeCeEccc---------cccccCCceEEecCCCcccc
Confidence 466778889999999999999872 245678999999999999 899999 6899999999999
Q ss_pred CcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChh
Q 002715 205 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 284 (889)
Q Consensus 205 GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~ 284 (889)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|++.|+.+|++||+|||+||||++||++
T Consensus 135 GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~ 214 (466)
T PRK05478 135 GAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSME 214 (466)
T ss_pred chhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCcc
Q 002715 285 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 364 (889)
Q Consensus 285 ~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA 364 (889)
+|+|||||++|+|||+||||+|++|++||+.+++.. .+++|.+++..|+.. .+|++|+|+++++||||+|+|+||
T Consensus 215 ~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va 289 (466)
T PRK05478 215 GRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDKAVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVT 289 (466)
T ss_pred HHhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHHHHHhhhcc-cCCCCCceeEEEEEEcccceeeec
Confidence 999999999999999999999999999999554432 467899999999764 689999999999999999999999
Q ss_pred CCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcc--cccCccEEEEEeecCCCCCChhHHHHH
Q 002715 365 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVIAAITSCTNTSNPSVMLGA 442 (889)
Q Consensus 365 ~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IgSCTN~s~~dl~~aA 442 (889)
+|++|+|++||+|+.++++++++... +.......+|++.+. .+.+++|++||||||||||+|||++||
T Consensus 290 ~P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA 359 (466)
T PRK05478 290 WGTNPGQVISIDGKVPDPEDFADPVK----------RASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAA 359 (466)
T ss_pred CCCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHH
Confidence 99999999999999998887766431 111122334543222 267889999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEE
Q 002715 443 ALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAA 522 (889)
Q Consensus 443 ~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~ 522 (889)
++| ||+||+||||++|+|||++|++||+++||+++|.++||.|.+||||+|+|++++.. .+|++
T Consensus 360 ~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~l-------~~ge~--- 423 (466)
T PRK05478 360 AVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDKL-------PPGER--- 423 (466)
T ss_pred HHh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCC-------CCCCE---
Confidence 999 99999999999999999999999999999999999999999999999999986643 34776
Q ss_pred EeeccCCCCCCCCCCccCCceecCHHHHHHHHHccccc
Q 002715 523 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 560 (889)
Q Consensus 523 ~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 560 (889)
+|||+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 424 ~vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~It 460 (466)
T PRK05478 424 CASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHFV 460 (466)
T ss_pred EEEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCcC
Confidence 78999999999999665 58999999999999999994
No 19
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=1.2e-121 Score=1043.25 Aligned_cols=457 Identities=39% Similarity=0.618 Sum_probs=368.4
Q ss_pred HHHHHHHhhhcCCC----CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCcc
Q 002715 51 KDVEKIIDWETTSP----KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 126 (889)
Q Consensus 51 ~~ie~il~~~~~~~----~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~ 126 (889)
|+.|||++.|.... .+.+|.++|||+|+||+||++++.+|++|+. .+++|.. +++++||++|++..
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~g~---------~v~~p~~-v~~~~DH~vp~~~~ 70 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRAMGE---------KVRDPDK-VVLVIDHSVPADDI 70 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHHHCH---------CCHSTTS-EEEE--SS--BSS-
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHHCCC---------ceecCCC-ceEEecCccccccc
Confidence 57899999986532 3458999999999999999999999987642 2445553 78999999999875
Q ss_pred ccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccCC-eeeecCCCCcccC
Q 002715 127 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMID 205 (889)
Q Consensus 127 ~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~G 205 (889)
+.+ |+..++.+|+++|+|++|.++.|....|.|++.||||||++| .|++.|+ ++|||||||||+|
T Consensus 71 ~~~-----~~~~~~~~n~~~~~~l~~~~~~~gi~~~~~~~~GI~Hqv~~E---------~g~~~PG~~vvg~DSHT~t~G 136 (465)
T PF00330_consen 71 GSA-----NLQIEDARNRERYRFLRWFAKEFGIKFFDPGGPGICHQVLPE---------EGLVLPGMTVVGTDSHTCTYG 136 (465)
T ss_dssp HHH-----HHHHHHHHCHHHHHHHHHHHHHCTTEEEETTSSBSHHHHHHH---------HTT-STTEEEEESSTTGGGGG
T ss_pred cch-----hcchhhHHHHHHHHHHHHHHHHcCCceecCCCCCeeeeeehh---------hccccceeEEEeCCCCcchhh
Confidence 433 777889999999999999998885444444445999999999 8889995 7999999999999
Q ss_pred cccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhh
Q 002715 206 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLAD 285 (889)
Q Consensus 206 alG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~ 285 (889)
|||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||+++
T Consensus 137 alGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~ 216 (465)
T PF00330_consen 137 ALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMDD 216 (465)
T ss_dssp GGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HHH
T ss_pred hceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccC
Q 002715 286 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSG 365 (889)
Q Consensus 286 R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~ 365 (889)
|||||||++|+||++||||+|++|++||+.++|.++..++.++|.+.+.|| +|++|.|+++++||||+|+|+||+
T Consensus 217 R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~-----~D~dA~Y~~~i~iDls~leP~va~ 291 (465)
T PF00330_consen 217 RMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLK-----SDPDAEYDKVIEIDLSELEPQVAG 291 (465)
T ss_dssp HHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS-------TT---SEEEEEEGGG-SSEEE-
T ss_pred hhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhcc-----CCCccCeeEEEEEEcCcccccccc
Confidence 999999999999999999999999999999999987777777777777776 788999999999999999999999
Q ss_pred CCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCC--cccccCccEEEEEeecCCCCCChhHHHHHH
Q 002715 366 PKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT--PAQLRHGDVVIAAITSCTNTSNPSVMLGAA 443 (889)
Q Consensus 366 P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~--~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~ 443 (889)
|++|+|++||+|+.+++.++.+.. . +.....+++|++. ...+.+++|++||||||||||+|||++||+
T Consensus 292 P~~P~~~~~v~e~~~~~~~~~~~v-~---------~~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~ 361 (465)
T PF00330_consen 292 PHSPDNVVPVSEVAPDFASILDPV-E---------REAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAAG 361 (465)
T ss_dssp SSSTTSEEEHHHHHHHHHHHH--------------CCGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHHH
T ss_pred CCCCcccccccccccccccccccc-c---------ccccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHHH
Confidence 999999999999999988765421 1 1112234555433 356789999999999999999999999999
Q ss_pred HHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhcc-CceEEE
Q 002715 444 LVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITE-NDIVAA 522 (889)
Q Consensus 444 lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~-~~~~~~ 522 (889)
+|+++|+ ++++|+||++|+|||++|+++|+++||+++|+++||.|.+|||++|+|+++ +.+. +.+ +++
T Consensus 362 il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~~----~~~~~~~--- 430 (465)
T PF00330_consen 362 ILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPDV----LAPLGEV--- 430 (465)
T ss_dssp HHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---CC----HCCTTEE---
T ss_pred Hhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCcc----cccccce---
Confidence 9987776 799999999999999999999999999999999999999999999999995 2211 222 443
Q ss_pred EeeccCCCCCCCCCCccCCceecCHHHHHHHHHcc
Q 002715 523 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 557 (889)
Q Consensus 523 ~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG 557 (889)
+|||+||||+||||+..+.+|||||++||||||+|
T Consensus 431 ~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 431 CVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp EEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred EEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 79999999999999999999999999999999998
No 20
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=5.2e-119 Score=1002.23 Aligned_cols=409 Identities=32% Similarity=0.517 Sum_probs=364.0
Q ss_pred eeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002715 75 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 154 (889)
Q Consensus 75 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~ 154 (889)
|||+||+||++++++|++| |. ++.++| .++++||++|++..+.++ ...++.+|.++|+|++|.+
T Consensus 1 rv~~~D~tg~~a~~~f~~~-------g~-~~v~~p---~~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GL-PKVAVP---STIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CeeEEecccHHHHHHHHHh-------CC-CCCCCC---CeEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHH
Confidence 7999999999999999754 54 445555 478999999998766544 3567789999999999999
Q ss_pred cccccccccCCCCceeccccccccceeeecCCCcccCC-eeeecCCCCcccCcccceeccCCHHHHHHHHcCCceEeecC
Q 002715 155 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 233 (889)
Q Consensus 155 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~~~~~~vP 233 (889)
++| |++|+|||+||||||++|+ +++|+ ++|||||||||+||||+||||||++|++++|+|+++||++|
T Consensus 65 ~~~-gi~~~~~g~GI~Hqv~~E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vP 133 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCP 133 (412)
T ss_pred HHc-CCeEECCCCCeeceEchhh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCC
Confidence 998 8999999999999999993 56786 69999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEEeCChHHHHHH
Q 002715 234 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 313 (889)
Q Consensus 234 evv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~YL 313 (889)
|+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|+|+++||+++|||||||++|+|||+||||+|++|++||
T Consensus 134 e~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl 213 (412)
T cd01584 134 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYL 213 (412)
T ss_pred CEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhcccccCC
Q 002715 314 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 393 (889)
Q Consensus 314 ~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~ 393 (889)
+.++|+++ ++++++|+ ++.+| +|++|.|+++++||||+|||+||+|++|+|++||+|+.+.+.+
T Consensus 214 ~~~~~~~~-~~~~~~y~-~~~l~-----~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------- 277 (412)
T cd01584 214 KATGRAEI-ADLADEFK-DDLLV-----ADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------- 277 (412)
T ss_pred HhcCchHH-HHHHHHHH-hcccC-----CCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc---------
Confidence 99999865 67788887 33443 7899999999999999999999999999999999999864321
Q ss_pred CccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHH
Q 002715 394 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 473 (889)
Q Consensus 394 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~ 473 (889)
.|++ .+|++||||||||||+|||+.|| .++|+|+++|+|++ ||++|+|||++|++
T Consensus 278 -----------------~g~~-----~~Id~a~IGSCTNgr~~Dl~~AA-~ilk~a~~~g~~v~--vr~~v~PgS~~V~~ 332 (412)
T cd01584 278 -----------------NGWP-----LDLRVGLIGSCTNSSYEDMGRAA-SIAKQALAHGLKCK--SIFTITPGSEQIRA 332 (412)
T ss_pred -----------------cCCc-----eeEEEEEEeccCCCChHHHHHHH-HHHhhHHhCCCCCC--CcEEEeCCCHHHHH
Confidence 1111 25789999999999999966555 56799999999998 89999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCC-CChHHHhhhccCceEEEEeeccCCCCCCCCC-CccCCceecCHHHHH
Q 002715 474 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGD-IDDAVAAAITENDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVV 551 (889)
Q Consensus 474 ~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~-l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g-~~~~~~yLaSP~~Va 551 (889)
||+++||+++|.++||.|.+||||+|+|++++ ..+ +++.. ++|||+||||+|||| .....+|||||++||
T Consensus 333 ~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~~~-------~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~va 404 (412)
T cd01584 333 TIERDGLLQTFRDAGGIVLANACGPCIGQWDRKDIK-------KGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVT 404 (412)
T ss_pred HHHHCCcHHHHHHcCCEEcCCcccccccCCCCcccC-------CCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHH
Confidence 99999999999999999999999999999875 222 23321 478999999999994 445679999999999
Q ss_pred HHHHcccc
Q 002715 552 AYALAGSV 559 (889)
Q Consensus 552 A~AlaG~i 559 (889)
||||+|++
T Consensus 405 AsAi~G~~ 412 (412)
T cd01584 405 AMAIAGTL 412 (412)
T ss_pred HHHhcccC
Confidence 99999985
No 21
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=2.4e-115 Score=967.17 Aligned_cols=380 Identities=27% Similarity=0.423 Sum_probs=342.9
Q ss_pred eeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002715 75 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 154 (889)
Q Consensus 75 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~ 154 (889)
|+|+||+|+++++. +||+ +|.+ ..+||++ +++++||++|++ +....|+.+++.+|.++|.+
T Consensus 1 ~~~~hD~t~p~a~~---~~~~----~g~~-~v~dp~k-~~~~~DH~vp~~-----~~~~~~~~~~~r~~a~~~gi----- 61 (382)
T cd01583 1 LHLVHDVTSPQAFE---GLRE----AGRE-KVWDPEK-IVAVFDHNVPTP-----DIKAAEQVKTLRKFAKEFGI----- 61 (382)
T ss_pred CEEEEeccHHHHHH---HHHH----hCCc-ccCCCCc-eEEEcCCCCCCC-----CHHHHHHHHHHHHHHHHhCc-----
Confidence 68999999999984 3443 3442 3445543 689999999998 34456777777787776542
Q ss_pred cccccccccCC-CCceeccccccccceeeecCCCcccC-CeeeecCCCCcccCcccceeccCCHHHHHHHHcCCceEeec
Q 002715 155 NAFHNMLVVPP-GSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 232 (889)
Q Consensus 155 ~~f~~~~~~pp-g~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~~~~~~v 232 (889)
+++++ |+|||||+++| +|++.| +++|||||||||+||||+||||||++|++++|+||++|+++
T Consensus 62 ------~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~v 126 (382)
T cd01583 62 ------NFFDVGRQGICHVILPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRV 126 (382)
T ss_pred ------ccccCCCCCEeeEEecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeC
Confidence 33556 89999999999 788889 58999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEEeCChHHHHH
Q 002715 233 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 312 (889)
Q Consensus 233 Pevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~Y 312 (889)
||+|+|+|+|+|++||+||||||+|++.|+.+|++||+|||+|+||++||+++|||||||++|+|||+||||+|++|++|
T Consensus 127 Peti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~y 206 (382)
T cd01583 127 PETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEY 206 (382)
T ss_pred CcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhcccccC
Q 002715 313 LKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 392 (889)
Q Consensus 313 L~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~ 392 (889)
|+.++|+.. + .+ .+|++|.|+++++||||+|+|+||+|++|+|++||+|+.+.
T Consensus 207 L~~~~~~~~--~----------~~----~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~~----------- 259 (382)
T cd01583 207 LKGRGKAYW--K----------EL----KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEGI----------- 259 (382)
T ss_pred HHhcCccch--h----------hc----CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCCc-----------
Confidence 999987631 1 22 57999999999999999999999999999999999998631
Q ss_pred CCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHH
Q 002715 393 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVT 472 (889)
Q Consensus 393 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~ 472 (889)
+|+|||||||||||+|||++||++| ||+||+|+||++|+|||++|+
T Consensus 260 ----------------------------~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 260 ----------------------------KIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred ----------------------------ceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHH
Confidence 3679999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHH
Q 002715 473 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 552 (889)
Q Consensus 473 ~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA 552 (889)
++|+++||+++|.++||.|.+|||++|+|+++++.. +||+ +|||+||||+||||+..+.+|||||++|||
T Consensus 306 ~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAA 375 (382)
T cd01583 306 KQAEKEGLIEIFIEAGAEVRPPGCGACLGGHMGVLA-------PGER---CVSTSNRNFKGRMGSPGARIYLASPATAAA 375 (382)
T ss_pred HHHHHCCcHHHHHHCCCEEeCCCcccccCCCCCcCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 999999999999999999999999999999887643 4675 789999999999999888999999999999
Q ss_pred HHHcccc
Q 002715 553 YALAGSV 559 (889)
Q Consensus 553 ~AlaG~i 559 (889)
|||+|+|
T Consensus 376 sAi~G~i 382 (382)
T cd01583 376 SAITGEI 382 (382)
T ss_pred HHhcccC
Confidence 9999986
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=5.4e-115 Score=969.98 Aligned_cols=405 Identities=28% Similarity=0.415 Sum_probs=363.7
Q ss_pred HHHHHHHhhhcCC--CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCcccc
Q 002715 51 KDVEKIIDWETTS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 128 (889)
Q Consensus 51 ~~ie~il~~~~~~--~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~ 128 (889)
|++|||++.|.+. .++..+.+++|++++||.|+++++..|. ++|. +..+||++ +.+++||++|+...
T Consensus 1 Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g~-~~v~~P~~-v~~~~DH~~p~~~~-- 69 (412)
T TIGR01343 1 TIAEKILSKHSGKEVYAGDLIVAEIDQAMVHDITAPLAIRRLE-------EYGI-DKVFDPER-IVIVVDHVVPASTI-- 69 (412)
T ss_pred CHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcCC-CcCCCCCc-EEEEcCCCCCCCCh--
Confidence 4789999999764 3566788999999999999999987664 4565 34677764 78899999998764
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhhccccccccc-ccCCCCceeccccccccceeeecCCCcccC-CeeeecCCCCcccCc
Q 002715 129 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 206 (889)
Q Consensus 129 ~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~-~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~Ga 206 (889)
..+..++..++|.| ++ ++. |+++|+|||||+++| +|++.| +++|||||||||+||
T Consensus 70 ~~a~~~~~~r~fa~--------~~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~iig~DSHT~t~Ga 126 (412)
T TIGR01343 70 KAAEMQKLAREFVK--------KT------GIKHFFDVGEGICHQVLPE---------EGLVKPGDLVVGADSHTCTYGA 126 (412)
T ss_pred hHHHHHHHHHHHHH--------Hc------CCceeecCCCCEEEEEchh---------hCcCCCCcEEEecCCCcCCcCc
Confidence 33445666666666 23 344 688999999999999 899999 689999999999999
Q ss_pred ccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhh
Q 002715 207 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 286 (889)
Q Consensus 207 lG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R 286 (889)
||+||||||++|++++|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|+|+++||+++|
T Consensus 127 lGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R 206 (412)
T TIGR01343 127 LGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEER 206 (412)
T ss_pred hhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCC
Q 002715 287 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGP 366 (889)
Q Consensus 287 ~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P 366 (889)
||||||++|+||++||||+|++|++||+.++|.+.. .+ .+|++|.|+++++||||+|||+||+|
T Consensus 207 ~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~~------------~~----~~D~da~Y~~~i~iDls~leP~va~P 270 (412)
T TIGR01343 207 MTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPFR------------VY----KSDEDAEYAKEVEIDASQLEPVVAAP 270 (412)
T ss_pred hhhhccccccCceeeEecCcHHHHHHHHhhCccccc------------cc----CCCCCCCEEEEEEEEcccceeeEecC
Confidence 999999999999999999999999999998765321 12 57999999999999999999999999
Q ss_pred CCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHH
Q 002715 367 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVA 446 (889)
Q Consensus 367 ~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla 446 (889)
++|+|++||+|+.+ -+|+|||||||||||++||++||++|
T Consensus 271 ~~Pdnv~~v~~~~g---------------------------------------~~id~~~IGSCTngr~~Dl~~aA~il- 310 (412)
T TIGR01343 271 HNVDNVHPVSEVEG---------------------------------------IEVDQVFIGSCTNGRIEDLRVAAKIL- 310 (412)
T ss_pred CCCCcEEEhHHhCC---------------------------------------CeeeEEEEecCCCCChHHHHHHHHHH-
Confidence 99999999999763 13679999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeec
Q 002715 447 KKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLS 526 (889)
Q Consensus 447 ~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS 526 (889)
+|+||+|+||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++.+.+. +|++ +|||
T Consensus 311 -----~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l~-------~ge~---~vsT 375 (412)
T TIGR01343 311 -----KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVLA-------PGEV---CIST 375 (412)
T ss_pred -----cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEEe
Confidence 999999999999999999999999999999999999999999999999999755433 3565 7899
Q ss_pred cCCCCCCCCCCccCCceecCHHHHHHHHHccccc
Q 002715 527 GNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 560 (889)
Q Consensus 527 ~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 560 (889)
+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 376 ~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 376 SNRNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred cCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 9999999999888889999999999999999994
No 23
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.7e-114 Score=966.07 Aligned_cols=405 Identities=27% Similarity=0.409 Sum_probs=365.1
Q ss_pred HHHHHHHHhhhcCCC--CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccc
Q 002715 50 SKDVEKIIDWETTSP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 127 (889)
Q Consensus 50 ~~~ie~il~~~~~~~--~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~ 127 (889)
+|++|||++.|.+.. ++..|.+++|++++||.|+++++..|. ++| .+.++|.+ +.+++||++|+....
T Consensus 1 ~Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g--~~v~~p~~-~~~~~DH~~p~~~~~ 70 (412)
T TIGR02086 1 MTLAEKILSEKVGRPVEAGEIVEVEVDLAMAHDGTGPLAIETLR-------ELG--ARVEDPEK-IVIFFDHVVPPPTVE 70 (412)
T ss_pred CCHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcC--CcccCCCC-EEEECCCCCCCCCHH
Confidence 478999999997642 566788999999999999999987664 346 55788875 788999999998643
Q ss_pred cHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccC-CeeeecCCCCcccCc
Q 002715 128 SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 206 (889)
Q Consensus 128 ~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~Ga 206 (889)
.+..++..++|.|. + ++++++||+|||||+++| .|++.| +++||+||||||+||
T Consensus 71 --~a~~~~~~r~fa~~--------~------gi~~~~~g~GI~H~v~~E---------~G~~~PG~~iig~DSHT~t~Ga 125 (412)
T TIGR02086 71 --AANRQKEIREFAKE--------H------GIPVFDVGEGICHQVLVE---------EGYAGPGMVVVGGDSHTCTSGA 125 (412)
T ss_pred --HHHHHHHHHHHHHH--------c------CCcEECCCCCeEeEEhhh---------cCccCCCcEEEecCCCccccch
Confidence 33344555555542 2 466789999999999999 899999 579999999999999
Q ss_pred ccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhh
Q 002715 207 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 286 (889)
Q Consensus 207 lG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R 286 (889)
||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+++||+++|
T Consensus 126 lGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R 205 (412)
T TIGR02086 126 VGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDER 205 (412)
T ss_pred hhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCC
Q 002715 287 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGP 366 (889)
Q Consensus 287 ~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P 366 (889)
||||||++|+||++||||+|++|++||+.++|.+.. .| .+|++|.|+++++||||+|||+||+|
T Consensus 206 ~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~~------------~~----~~D~~a~Y~~~i~iDls~leP~va~P 269 (412)
T TIGR02086 206 MTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEFR------------IL----RPDPGAKYDDEIEIDLSDLEPLVAVP 269 (412)
T ss_pred hhhhhcccccCceeeEecCCHHHHHHHHhcCCcccc------------cc----cCCCCCCEEEEEEEEccceeEEecCC
Confidence 999999999999999999999999999999876421 22 57999999999999999999999999
Q ss_pred CCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHH
Q 002715 367 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVA 446 (889)
Q Consensus 367 ~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla 446 (889)
++|+|++|++++.+. +|++||||||||||++||++||++|
T Consensus 270 ~~P~nv~~v~~~~~~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~vL- 309 (412)
T TIGR02086 270 HSVDNVRPVSDVEGT---------------------------------------EIDQVFIGSCTNGRIEDLRIAAEIL- 309 (412)
T ss_pred CChHhcccchhhccc---------------------------------------ceeEEEEeccCCCChHHHHHHHHHH-
Confidence 999999999998631 3679999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeec
Q 002715 447 KKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLS 526 (889)
Q Consensus 447 ~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS 526 (889)
||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++.+++. +|++ +|||
T Consensus 310 -----kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~vsT 374 (412)
T TIGR02086 310 -----EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVLG-------DGEV---CVST 374 (412)
T ss_pred -----cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEEe
Confidence 999999999999999999999999999999999999999999999999999866543 3665 7899
Q ss_pred cCCCCCCCCCCccCCceecCHHHHHHHHHccccc
Q 002715 527 GNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 560 (889)
Q Consensus 527 ~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 560 (889)
+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 375 ~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 375 TNRNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred cCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 9999999999888889999999999999999994
No 24
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=2.9e-114 Score=965.64 Aligned_cols=407 Identities=30% Similarity=0.439 Sum_probs=363.6
Q ss_pred cHHHHHHHHhhhcCCC--CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCcc
Q 002715 49 KSKDVEKIIDWETTSP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 126 (889)
Q Consensus 49 ~~~~ie~il~~~~~~~--~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~ 126 (889)
.+|++||||+.|.... ++..|.+++|++++||.|+++++..|.+ +|.+ ..++|.+ +.+++||++|+...
T Consensus 2 ~~Tl~eKIl~~h~~~~v~~G~~v~v~vD~~~~hD~t~p~a~~~~~~-------~g~~-~v~~P~~-~~~~~DH~~p~~~~ 72 (418)
T PRK00402 2 GMTLAEKILARHSGRDVSPGDIVEAKVDLVMAHDITGPLAIKEFEK-------IGGD-KVFDPSK-IVIVFDHFVPAKDI 72 (418)
T ss_pred CcCHHHHHHHHhcCCCCCCCCEEEEECCEEEEecccHHHHHHHHHH-------cCCC-ccCCCCc-EEEECCCCCCCCCh
Confidence 3689999999997643 5667889999999999999999876643 4553 4677774 78899999999854
Q ss_pred ccHHHHHhhhHHHHHHhhhhhhhhhhccccccccc-ccCCCCceeccccccccceeeecCCCcccC-CeeeecCCCCccc
Q 002715 127 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 204 (889)
Q Consensus 127 ~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~-~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 204 (889)
..+..++..++|.|. + +++ |+++|+|||||+++| +|++.| +++|||||||||+
T Consensus 73 --~~a~~~~~~r~fa~~--------~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (418)
T PRK00402 73 --KSAEQQKILREFAKE--------Q------GIPNFFDVGEGICHQVLPE---------KGLVRPGDVVVGADSHTCTY 127 (418)
T ss_pred --hhHHHHHHHHHHHHH--------c------CCcceeCCCCCEeeEehhh---------cCccCCCcEEEeCCCCcccc
Confidence 334456666666552 2 344 678999999999999 789999 5899999999999
Q ss_pred CcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChh
Q 002715 205 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 284 (889)
Q Consensus 205 GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~ 284 (889)
||||+||||||++|++++|++|++|+++||+|+|+|+|+|++||+||||||+|++.|+.+|++||+|||+|+|+++||++
T Consensus 128 GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~ 207 (418)
T PRK00402 128 GALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMD 207 (418)
T ss_pred CccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCcc
Q 002715 285 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 364 (889)
Q Consensus 285 ~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA 364 (889)
+|||||||++|+|||+||||+|++|++||+.+++.+. .| ..+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~~-------------~~---l~~D~~a~Y~~~i~iDls~leP~va 271 (418)
T PRK00402 208 ERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRDY-------------KP---WKSDEDAEYEEVYEIDLSKLEPQVA 271 (418)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHHhhccccc-------------cc---ccCCCCCCEEEEEEEEcccceeeee
Confidence 9999999999999999999999999999999854321 12 1479999999999999999999999
Q ss_pred CCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHH
Q 002715 365 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAAL 444 (889)
Q Consensus 365 ~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~l 444 (889)
+|++|+|++||+|+.+. +|++||||||||||+|||++||++
T Consensus 272 ~P~~Pdnv~~v~~~~g~---------------------------------------~id~~~IGSCTngr~eDl~~aA~i 312 (418)
T PRK00402 272 APHLPDNVKPVSEVEGT---------------------------------------KVDQVFIGSCTNGRLEDLRIAAEI 312 (418)
T ss_pred cCCCccceeEchhhCCc---------------------------------------eeeEEEEecCCCCChHHHHHHHHH
Confidence 99999999999997631 367999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEe
Q 002715 445 VAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAV 524 (889)
Q Consensus 445 la~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~v 524 (889)
| ||+||+|+||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|++.+.+++ |++ +|
T Consensus 313 l------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~~~-------ge~---~v 376 (418)
T PRK00402 313 L------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVLAP-------GEV---CL 376 (418)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCCC-------CCE---EE
Confidence 9 9999999999999999999999999999999999999999999999999986554333 564 78
Q ss_pred eccCCCCCCCCCCccCCceecCHHHHHHHHHccccc
Q 002715 525 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 560 (889)
Q Consensus 525 sS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 560 (889)
||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 377 sT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 377 STTNRNFKGRMGSPESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred EecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeC
Confidence 999999999999888889999999999999999994
No 25
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=4.2e-114 Score=954.52 Aligned_cols=379 Identities=36% Similarity=0.561 Sum_probs=347.5
Q ss_pred ceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccccHHHHHhhhHHHHHHhhhhhhhhhhc
Q 002715 74 ARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWG 153 (889)
Q Consensus 74 drvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~ 153 (889)
|++|+||.|+|+++..| +++|.+ ..++|. +.+++||++|+.. .+|.++|.|++|.
T Consensus 1 D~~~~hD~t~p~a~~~~-------~~~g~~-~v~~~~--~~~~~DH~~p~~~---------------~~~a~~~~~lr~~ 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQF-------EAMGVD-RVRTEL--SVSYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CceEEEeccHHHHHHHH-------HHcCCC-eeCCCC--eEEEeCCCCCCCC---------------hHHHHHHHHHHHH
Confidence 78999999999998766 346764 345563 7889999999964 2677888999999
Q ss_pred ccccccccccCCCCceeccccccccceeeecCCCcccC-CeeeecCCCCcccCcccceeccCCHHHHHHHHcCCceEeec
Q 002715 154 SNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 232 (889)
Q Consensus 154 ~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~~~~~~v 232 (889)
+++| ++++++||+|||||+++|+ ++.| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 56 a~~~-gi~~~~~g~GI~H~v~~E~----------~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~v 124 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLER----------FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPM 124 (380)
T ss_pred HHHc-CCEEECCCCCeeeeecHhh----------ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccC
Confidence 8888 7999999999999999994 4556 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEEeCChHHHHH
Q 002715 233 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 312 (889)
Q Consensus 233 Pevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~Y 312 (889)
||+|+|+|+|+|++||++|||+|+|++.|+.+|++||+|||+|+|+++||+++|||||||++|+||++||||+|++|++|
T Consensus 125 Petv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~y 204 (380)
T cd01585 125 PKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREF 204 (380)
T ss_pred CcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhcccccC
Q 002715 313 LKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 392 (889)
Q Consensus 313 L~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~ 392 (889)
|+.+||.+++. .+ .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+
T Consensus 205 l~~~gr~~~~~----------~l-----~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g------------ 257 (380)
T cd01585 205 LAAQGREDDWV----------EL-----AADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAG------------ 257 (380)
T ss_pred HHhcCCchhcc----------cc-----CCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCC------------
Confidence 99999865321 11 4799999999999999999999999999999999999763
Q ss_pred CCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHH
Q 002715 393 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVT 472 (889)
Q Consensus 393 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~ 472 (889)
-+|++||||||||||+|||++||++| ||+||+|+||++|+|||++|+
T Consensus 258 ---------------------------~~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~ 304 (380)
T cd01585 258 ---------------------------IKVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVL 304 (380)
T ss_pred ---------------------------ceEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHH
Confidence 13789999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHH
Q 002715 473 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 552 (889)
Q Consensus 473 ~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA 552 (889)
++|+++||+++|+++||.|.+|||++|+|+++.+ + ++++ +|||+||||+||||+..+.+|||||++|||
T Consensus 305 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~-~-------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaA 373 (380)
T cd01585 305 EMLARNGALADLLAAGARILESACGPCIGMGQAP-P-------TGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAA 373 (380)
T ss_pred HHHHHCCcHHHHHHcCCEEeCCCceeccCCCCCC-C-------CCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHH
Confidence 9999999999999999999999999999997663 2 3565 789999999999998888899999999999
Q ss_pred HHHcccc
Q 002715 553 YALAGSV 559 (889)
Q Consensus 553 ~AlaG~i 559 (889)
|||+|+|
T Consensus 374 sAi~G~i 380 (380)
T cd01585 374 AALTGVI 380 (380)
T ss_pred HHhCccC
Confidence 9999986
No 26
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=1.5e-113 Score=957.68 Aligned_cols=409 Identities=31% Similarity=0.444 Sum_probs=363.1
Q ss_pred HHHHHHHHhhhcCCC---CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCcc
Q 002715 50 SKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 126 (889)
Q Consensus 50 ~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~ 126 (889)
+|++|||++.|.+.. ++..|.+++|++|+||.|+++++..|. ++|. +..+||+. +.+++||++|+...
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~-------~~g~-~~V~dp~~-v~~~~DH~vpa~~~ 71 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFK-------EYGG-KKVFDPDR-VALVPDHFTPNKDI 71 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHH-------HcCC-CcCCCCCC-EEEEeCCCCCCCCH
Confidence 478999999997643 566788999999999999999987653 4565 45678875 78899999999853
Q ss_pred ccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCC-ceeccccccccceeeecCCCcccC-CeeeecCCCCccc
Q 002715 127 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGS-GIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 204 (889)
Q Consensus 127 ~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~-GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 204 (889)
..+..++..++|.| ++++++ |+++|+ |||||+++| +|++.| +++|||||||||+
T Consensus 72 --~~a~~~~~~r~fa~--------~~gi~~-----f~d~g~~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (419)
T TIGR02083 72 --KSAEQCKMMREFAR--------EQGIEK-----FFEIGNMGIEHALLPE---------EGIVKPGDLIIGADSHTCTY 127 (419)
T ss_pred --HHHHHHHHHHHHHH--------HcCCcc-----eecCCCcceeeeeccc---------cCccCCCeEEEecCCCcccc
Confidence 44556677777777 334433 466775 999999999 899999 5799999999999
Q ss_pred CcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChh
Q 002715 205 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 284 (889)
Q Consensus 205 GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~ 284 (889)
||||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+++||++
T Consensus 128 Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~ 207 (419)
T TIGR02083 128 GALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMD 207 (419)
T ss_pred CccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCcc
Q 002715 285 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 364 (889)
Q Consensus 285 ~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA 364 (889)
+|||||||++|+||++||||+|++|++||+.+++.+ ++ .+ .+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~--~~----------~~----~~D~dA~Y~~~~~iDls~leP~va 271 (419)
T TIGR02083 208 DRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE--EK----------IY----KADEDAKYVRVIEIDLSELEPQVA 271 (419)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHhhCCccc--hh----------cc----cCCCCCCEEEEEEEEccccceeec
Confidence 999999999999999999999999999999765432 11 12 579999999999999999999999
Q ss_pred CCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHH
Q 002715 365 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAAL 444 (889)
Q Consensus 365 ~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~l 444 (889)
+|++|+|++||+|+... | -+|++||||||||||++||++||++
T Consensus 272 ~P~~pdnv~~v~e~~~~------------------------------g-------~~id~v~IGSCTngr~eDl~~AA~i 314 (419)
T TIGR02083 272 FPHLPENTKDISEAGKE------------------------------E-------IKIDQVVIGSCTNGRLEDLRLAAEI 314 (419)
T ss_pred CCCCcccCcChhhcccc------------------------------c-------CccCeEEEEcCCCCChHHHHHHHHH
Confidence 99999999999998620 1 1367999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEe
Q 002715 445 VAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAV 524 (889)
Q Consensus 445 la~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~v 524 (889)
| ||+||+++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++.+.+.+ +++ +|
T Consensus 315 L------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~l~~-------ge~---~v 378 (419)
T TIGR02083 315 L------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGILAE-------GER---AI 378 (419)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCcCCC-------CCE---EE
Confidence 9 9999999999999999999999999999999999999999999999999988554433 564 78
Q ss_pred eccCCCCCCCCCCccCCceecCHHHHHHHHHccccc
Q 002715 525 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 560 (889)
Q Consensus 525 sS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 560 (889)
||+||||+||||+....+|||||++||||||+|+|+
T Consensus 379 sT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 379 STTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred EecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 999999999999666789999999999999999994
No 27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-112 Score=920.36 Aligned_cols=410 Identities=29% Similarity=0.448 Sum_probs=361.7
Q ss_pred HHHHHHHHhhhcCCC---CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCcc
Q 002715 50 SKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 126 (889)
Q Consensus 50 ~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~ 126 (889)
+|+.|||++.|.... .++.+.+++|++|+||.|+|.++.-| +++|. +.++|++ +.+++||++|++..
T Consensus 3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~l-------r~~g~--kV~~p~k-~~~~~DH~vPt~~~ 72 (423)
T COG0065 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGL-------REAGR--KVRDPEK-TVATFDHNVPTPDI 72 (423)
T ss_pred ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHH-------HHhCC--cccCccc-eEEEecCCCCCccH
Confidence 789999999997643 23457789999999999999997533 45565 4677775 67899999999865
Q ss_pred ccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCC-CceeccccccccceeeecCCCcccC-CeeeecCCCCccc
Q 002715 127 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 204 (889)
Q Consensus 127 ~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg-~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 204 (889)
.. + ++.+++.+|.++| ++ ..|++.| +||||||.+| +|++.| +++||+||||||+
T Consensus 73 ~~--a---~~~~~lr~~~ke~-----Gi-----~~~~~~g~~GI~H~v~pE---------~G~~~PG~~Iv~gDSHT~T~ 128 (423)
T COG0065 73 KA--A---EQQKELRENAKEF-----GI-----VNFYDVGDQGIVHQVGPE---------QGLTLPGMTIVGGDSHTCTH 128 (423)
T ss_pred HH--H---HHHHHHHHHHHHh-----CC-----eeeecCCCCcEEEEEecc---------ccccCCCcEEEecccCcccc
Confidence 33 2 3444555555543 33 3446677 9999999999 999999 5899999999999
Q ss_pred CcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChh
Q 002715 205 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 284 (889)
Q Consensus 205 GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~ 284 (889)
||||+||+|+|++|+|++|++|++|+++||+++|+++|+|++|||||||||+|++.++.+|++|+++||+|+.+++|||+
T Consensus 129 GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme 208 (423)
T COG0065 129 GAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSME 208 (423)
T ss_pred hhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCcc
Q 002715 285 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 364 (889)
Q Consensus 285 ~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA 364 (889)
+|||||||++|+||++|+|+||++|++||+.... +...|+.. .+|+||.|+++++||+|+|+|+||
T Consensus 209 ~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~~-------------a~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va 274 (423)
T COG0065 209 GRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWDG-------------AVAYWKTL-KSDEDAVYDKVVELDASDLEPQVA 274 (423)
T ss_pred hhhhhhhhhhhhcccceeeCCcHhHHHHHHHHhc-------------ccccccee-cCCCCCceeEEEEEEcccCCceee
Confidence 9999999999999999999999999999994221 12234443 689999999999999999999999
Q ss_pred CCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHH
Q 002715 365 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAAL 444 (889)
Q Consensus 365 ~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~l 444 (889)
||++|+|++||+|+.++. -+|+++|||||||||++||++||++
T Consensus 275 ~p~~p~nv~~v~e~~~~~-------------------------------------i~iDqVFIGSCTNgRieDLr~AA~I 317 (423)
T COG0065 275 WPTNPDNVVPVSEVEPDP-------------------------------------IKIDQVFIGSCTNGRIEDLRAAAEI 317 (423)
T ss_pred CCCCcccceecccccCCc-------------------------------------eeeceEEEeccCCccHHHHHHHHHH
Confidence 999999999999987420 1467999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEe
Q 002715 445 VAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAV 524 (889)
Q Consensus 445 la~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~v 524 (889)
| ||+||+++||++|+|||+.|+++++++||+++|.+|||.|..||||+|+|+|.+++++ ||+ |+
T Consensus 318 l------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL~~-------gE~---c~ 381 (423)
T COG0065 318 L------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLGP-------GER---CA 381 (423)
T ss_pred h------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcCCC-------CCE---Ee
Confidence 9 8999999999999999999999999999999999999999999999999999777655 555 67
Q ss_pred eccCCCCCCCCCCccCCceecCHHHHHHHHHccccc
Q 002715 525 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 560 (889)
Q Consensus 525 sS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 560 (889)
||+||||+||||+..+.+||+||+++||+|++|+|.
T Consensus 382 STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 382 STSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred eccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEec
Confidence 999999999999777788999999999999999994
No 28
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=1.3e-105 Score=897.73 Aligned_cols=403 Identities=24% Similarity=0.334 Sum_probs=350.5
Q ss_pred HHHHHHhhhcCCC---CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCcccc
Q 002715 52 DVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 128 (889)
Q Consensus 52 ~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~ 128 (889)
++||||+++.+.. ++..|.+++|++|+||.||++++..|.. +|. +++||++ +.+++||++|+...
T Consensus 1 ~~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~-------~~~--~v~d~~~-~v~~~DH~~p~~~~-- 68 (436)
T cd01581 1 LAQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKE-------LAC--LGFSADL-VMQSFCHTAAYPKP-- 68 (436)
T ss_pred ChHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHHH-------cCC--cccCCcc-EEEEcCCCCCCCCH--
Confidence 3799999997643 5677999999999999999999877643 444 4677764 77899999999854
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccCC-eeeecCCCCcccCcc
Q 002715 129 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGL 207 (889)
Q Consensus 129 ~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~Gal 207 (889)
..+..++..++|.+++ +++|++||+|||||++.| +++|+ ++|||||||||+||
T Consensus 69 ~~a~~~~~~r~fa~~~--------------gi~~~~~g~GI~Hqv~~e-----------~~~PG~~ivGtDSHT~t~ga- 122 (436)
T cd01581 69 VDVKTHRTLPDFISNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIG- 122 (436)
T ss_pred HHHHHHHHHHHHHHHc--------------CCcEECCCCCeeeeeehh-----------hccCCceEEeeccccCCCCc-
Confidence 3445677788888742 356789999999999888 35786 57999999999986
Q ss_pred cceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHH----H--------HHHcCcceeEEEEec
Q 002715 208 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQ----M--------LRKHGVVGMFVEFYG 275 (889)
Q Consensus 208 G~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~----~--------L~~~G~~gk~vEf~G 275 (889)
||||+|++|++.+|++|++||++||+|+|+|+|+|++||+||||||+|+. . ++.+|++||+|||.
T Consensus 123 --~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~- 199 (436)
T cd01581 123 --ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE- 199 (436)
T ss_pred --eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC-
Confidence 89999999999999999999999999999999999999999999998653 3 33445689999996
Q ss_pred CcccccChhhhhhhhccCcccCceEeEEeCChHH-HHHHhhc----------CCCc-----chHHHHHHHHHHhhhcccC
Q 002715 276 EGMSELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSD-----DTVSMIESYLRANKMFVDY 339 (889)
Q Consensus 276 ~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t-~~YL~~t----------gr~~-----~~~~~~~~y~~~~~l~~~~ 339 (889)
|+++||+++|||||||++|+|||+||||+|++| ++||+.+ ||++ .+.++++.|.+++.+|
T Consensus 200 -Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--- 275 (436)
T cd01581 200 -GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLL--- 275 (436)
T ss_pred -CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccc---
Confidence 599999999999999999999999999999988 8999996 5542 3345677788777777
Q ss_pred CCCCCCCcccEEEEEEcCCc-ccCccCCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCccccc
Q 002715 340 SEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLR 418 (889)
Q Consensus 340 ~~~D~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~ 418 (889)
.||++|.|+++++||||+| ||+||+|++|+|++||+|+.+.
T Consensus 276 -~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g~------------------------------------- 317 (436)
T cd01581 276 -EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAGK------------------------------------- 317 (436)
T ss_pred -cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcCC-------------------------------------
Confidence 5799999999999999999 9999999999999999997631
Q ss_pred CccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCccc
Q 002715 419 HGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTT 498 (889)
Q Consensus 419 ~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~ 498 (889)
+|+++||||||| |++|++.||.+| ||+|++ .||++|+|||++|+++|+++|++++|.++||.|.+||||+
T Consensus 318 --~id~~~IGSCTn-r~eDl~~AA~il------kg~~~~-~vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~ 387 (436)
T cd01581 318 --KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEFK-PTRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSL 387 (436)
T ss_pred --ccceEEEecCCC-CHHHHHHHHHHH------cCCCCC-CCCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCcccc
Confidence 356999999999 999999999999 999975 5999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHHHHcccc
Q 002715 499 CIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 559 (889)
Q Consensus 499 CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i 559 (889)
|+|+.+.+ .+|++ +|||+||||+||||+ ...+|||||++||||||+|+|
T Consensus 388 C~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 388 CMGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred ccCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 99985443 35776 789999999999999 668899999999999999986
No 29
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=5.9e-105 Score=875.12 Aligned_cols=361 Identities=30% Similarity=0.479 Sum_probs=319.5
Q ss_pred eeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002715 75 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 154 (889)
Q Consensus 75 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~ 154 (889)
.+|+||.|+++++. |. ++|. ++.++|.+ +.+++||++|+.... .+..++..++|.|
T Consensus 1 ~~~~hd~t~p~~~~-~~-------~~g~-~~v~~p~~-~~~~~DH~vp~~~~~--~~~~~~~lr~~ak------------ 56 (363)
T cd01582 1 HCMTHDNSWPVALK-FM-------SIGA-TKIHNPDQ-IVMTLDHDVQNKSEK--NLKKYKNIESFAK------------ 56 (363)
T ss_pred CeeEEeCcHHHHHH-HH-------HcCC-CccCCCCC-EEEEcCCCCCCCCHH--HHHHHHHHHHHHH------------
Confidence 37999999998764 42 3565 45778874 788999999998642 3345555555555
Q ss_pred cccccccccCCCCceeccccccccceeeecCCCcccCC-eeeecCCCCcccCcccceeccCCHHHHHHHHcCCceEeecC
Q 002715 155 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 233 (889)
Q Consensus 155 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~~~~~~vP 233 (889)
++ +++|+|+|+|||||+++| +|+++|+ ++|||||||||+||||+||||||++|++++|+++++|+++|
T Consensus 57 -~~-gi~~~~~g~GI~Hqv~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vP 125 (363)
T cd01582 57 -KH-GIDFYPAGRGIGHQIMIE---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIP 125 (363)
T ss_pred -Hh-CCeEECCCCCEEEEeccc---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCC
Confidence 22 467899999999999999 8999997 57999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEEeCChHHHHHH
Q 002715 234 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 313 (889)
Q Consensus 234 evv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~YL 313 (889)
|+|+|+|+|+|++||+||||+|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 126 e~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D------- 198 (363)
T cd01582 126 PVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD------- 198 (363)
T ss_pred CEEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhcccccCC
Q 002715 314 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 393 (889)
Q Consensus 314 ~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~ 393 (889)
+++++||||+|||+||+|++|+|++|++++...
T Consensus 199 -----------------------------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------ 231 (363)
T cd01582 199 -----------------------------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------ 231 (363)
T ss_pred -----------------------------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------
Confidence 357999999999999999999999999997421
Q ss_pred CccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcC-CccCCceeEEEecCCHHHH
Q 002715 394 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELG-LEVKPWIKTSLAPGSGVVT 472 (889)
Q Consensus 394 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G-~kv~~~Vk~~v~PgS~~V~ 472 (889)
+ -+|++||||||||||++||+.||++|.+|..++| ++|+||||++|+|||++|+
T Consensus 232 ------------------~-------~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~ 286 (363)
T cd01582 232 ------------------N-------IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQ 286 (363)
T ss_pred ------------------C-------ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHH
Confidence 0 1367999999999999999999999943332222 3399999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHH
Q 002715 473 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 552 (889)
Q Consensus 473 ~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA 552 (889)
++|+++||+++|.++||.|.+|||++|+|+++++.++ +|+ +|||+||||+||||+..+.+|||||++|||
T Consensus 287 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaA 356 (363)
T cd01582 287 AAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLEP-------GEV---GISATNRNFKGRMGSTEALAYLASPAVVAA 356 (363)
T ss_pred HHHHHcCcHHHHHHCCCEEECCCCeeccCCCCCCCCC-------CCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 9999999999999999999999999999999887544 565 689999999999998888999999999999
Q ss_pred HHHcccc
Q 002715 553 YALAGSV 559 (889)
Q Consensus 553 ~AlaG~i 559 (889)
|||+|+|
T Consensus 357 sAi~G~i 363 (363)
T cd01582 357 SAISGKI 363 (363)
T ss_pred HHhCccC
Confidence 9999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=2.3e-100 Score=853.91 Aligned_cols=388 Identities=38% Similarity=0.601 Sum_probs=351.5
Q ss_pred eeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002715 75 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 154 (889)
Q Consensus 75 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~ 154 (889)
|||+||+||++++.+|+.| |.+.+.++|. ++++++||++|+.. .+|.++|+|++|.+
T Consensus 1 ~v~~hD~tgp~a~~~~~~~-------~~~~~v~~p~-~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEIL-------AALGKVADPS-QIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEecchHHHHHHHHHc-------CCCCCCCCcc-cEEEEECCCCCCCC---------------hhHHHHHHHHHHHH
Confidence 7999999999999887643 4432355554 68999999999963 26677788888888
Q ss_pred cccccccccCCCCceeccccccccceeeecCCCcccC-CeeeecCCCCcccCcccceeccCCHHHHHHHHcCCceEeecC
Q 002715 155 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 233 (889)
Q Consensus 155 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~GalG~lg~GVGg~e~~~~m~g~~~~~~vP 233 (889)
++|. ++|+++|+|||||+++|++ +.| ++++|+||||||+||||++|||+|++|++++|+||++|+++|
T Consensus 58 ~~~g-i~~~~~g~Gi~H~~~~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP 126 (389)
T cd01351 58 ALQG-IAFYRPGVGIIHQIMVENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKP 126 (389)
T ss_pred HHcC-CcEECCCCCeECccccccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCC
Confidence 7774 8999999999999999943 456 689999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceEeEEeCChHHHHHH
Q 002715 234 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 313 (889)
Q Consensus 234 evv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~t~~YL 313 (889)
++++|+|+|+|++||++||++|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||
T Consensus 127 ~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl 206 (389)
T cd01351 127 EVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWL 206 (389)
T ss_pred cEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhcccccCC
Q 002715 314 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 393 (889)
Q Consensus 314 ~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~ 393 (889)
+.++|++... .+++|.+. + .+|++|.|+++++||||+|+|+||+|++|+|++|++++.+
T Consensus 207 ~~~~~~~~~~-~~~~~~~~---l----~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~------------- 265 (389)
T cd01351 207 EATGRPLLKN-LWLAFPEE---L----LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG------------- 265 (389)
T ss_pred HhcCCchhhH-HHHHHHhc---c----CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC-------------
Confidence 9999987544 34444332 2 5899999999999999999999999999999999999752
Q ss_pred CccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHH
Q 002715 394 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 473 (889)
Q Consensus 394 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~ 473 (889)
.+|++||||||||+|++|++.||.+| ||+||+|+||++|+|||++|++
T Consensus 266 --------------------------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~ 313 (389)
T cd01351 266 --------------------------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYA 313 (389)
T ss_pred --------------------------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHH
Confidence 14789999999999999999999999 9999999999999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHH
Q 002715 474 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 553 (889)
Q Consensus 474 ~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~ 553 (889)
+++++||+++|+++||.|..+||++|+|++++++.+ +++ +|||+||||+||||+..+.+|||||++||||
T Consensus 314 ~a~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~~~-------g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAs 383 (389)
T cd01351 314 TLSREGYYEILVDSGARILPPGCGPCMGNGARLVAD-------GEV---GVSSGNRNFPGRLGTYERHVYLASPELAAAT 383 (389)
T ss_pred HHHHcChHHHHHHCCCEEeCCCCcccCCCCCCcCCC-------CcE---EEEeecCCCccccCCCCCceEECCHHHHHHH
Confidence 999999999999999999999999999999887544 554 6899999999999998889999999999999
Q ss_pred HHcccc
Q 002715 554 ALAGSV 559 (889)
Q Consensus 554 AlaG~i 559 (889)
||+|+|
T Consensus 384 Al~G~i 389 (389)
T cd01351 384 AIAGKI 389 (389)
T ss_pred HhcCcC
Confidence 999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=3.1e-97 Score=871.30 Aligned_cols=410 Identities=22% Similarity=0.309 Sum_probs=358.0
Q ss_pred cccHHHHHHHHhhhcCC---CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCcc
Q 002715 47 QVKSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQV 123 (889)
Q Consensus 47 ~~~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~ 123 (889)
..++|++|||++.+.+. .+|..|..++|.|++||.||++++..| +++|. ..++|+. |.+++||.+|.
T Consensus 368 ~~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~lg~--~~~~~d~-v~~~~dH~~p~ 437 (835)
T PRK09238 368 GKGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KDLAC--LGFSADL-VMQSFCHTAAY 437 (835)
T ss_pred CCcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHHH-------HHcCC--cccCCCc-EEEEccCCCCC
Confidence 34589999999999764 257789999999999999999997655 45565 4566664 67899999998
Q ss_pred CccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccCCe-eeecCCCCc
Q 002715 124 DVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTT 202 (889)
Q Consensus 124 ~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pdt-vvGtDSHT~ 202 (889)
... .++..++..++|.+++ ++.+++||+|||||++. |+++||+ ++|||||||
T Consensus 438 ~~~--~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~H~vl~-----------~~~~Pg~vivG~DSHT~ 490 (835)
T PRK09238 438 PKP--VDVKTHHTLPDFIMNR--------------GGVSLRPGDGVIHSWLN-----------RMLLPDTVGTGGDSHTR 490 (835)
T ss_pred CCH--HHHHHHHHHHHHHHHc--------------CCcEeCCCCCeeeeccc-----------ccccCCeEEEecccccC
Confidence 753 4556777788888842 23457899999999962 5889985 699999999
Q ss_pred ccCcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHH----HH--------HHHcCcceeE
Q 002715 203 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVT----QM--------LRKHGVVGMF 270 (889)
Q Consensus 203 ~~GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~----~~--------L~~~G~~gk~ 270 (889)
|+|| ||||+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+ +. ++.+|++||+
T Consensus 491 t~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~ 567 (835)
T PRK09238 491 FPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRI 567 (835)
T ss_pred CCCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeE
Confidence 9997 7899999999999999999999999999999999999999999999994 42 3334578999
Q ss_pred EEEecCcccccChhhhhhhhccCcccCceEeEEe-CChHHHHHHhhc----------CCCc-----chHHHHHHHHHHhh
Q 002715 271 VEFYGEGMSELSLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT----------GRSD-----DTVSMIESYLRANK 334 (889)
Q Consensus 271 vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp-~De~t~~YL~~t----------gr~~-----~~~~~~~~y~~~~~ 334 (889)
|||. |+++||+++|+|||||++|+||++|+|| +|+.|++||+.+ ||.+ .+++.+++|++.+.
T Consensus 568 lEf~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~ 645 (835)
T PRK09238 568 LEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPE 645 (835)
T ss_pred EEEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhcc
Confidence 9995 6999999999999999999999999999 788899999986 6642 34667888888888
Q ss_pred hcccCCCCCCCCcccEEEEEEcCCc-ccCccCCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCC
Q 002715 335 MFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 413 (889)
Q Consensus 335 l~~~~~~~D~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 413 (889)
+| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 646 ll----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~-------------------------------- 689 (835)
T PRK09238 646 LL----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT-------------------------------- 689 (835)
T ss_pred cc----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC--------------------------------
Confidence 88 5799999999999999999 9999999999999999998631
Q ss_pred cccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEec
Q 002715 414 PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 493 (889)
Q Consensus 414 ~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~ 493 (889)
+|++||||||| |+++|++.||.+| ||+++++.||++|+|||+.|+++|+++|++++|.++||.|..
T Consensus 690 -------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~ 755 (835)
T PRK09238 690 -------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEM 755 (835)
T ss_pred -------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECC
Confidence 35689999999 9999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHHHHccccc
Q 002715 494 YGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 560 (889)
Q Consensus 494 ~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 560 (889)
||||+|+||.+.+ .+|++ +|||+||||+||||+ ...+|||||++|||+||+|+|+
T Consensus 756 pGCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (835)
T PRK09238 756 PGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRIP 810 (835)
T ss_pred CcchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCccC
Confidence 9999999995543 35775 689999999999997 5678999999999999999993
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=6.2e-96 Score=857.62 Aligned_cols=408 Identities=23% Similarity=0.323 Sum_probs=355.5
Q ss_pred ccHHHHHHHHhhhcCC---CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccC
Q 002715 48 VKSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVD 124 (889)
Q Consensus 48 ~~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~ 124 (889)
.++|++|||++.+.+. .+|..|..++|.|++||.||++++..|. ++|. ..++|+. +.+++||.+|..
T Consensus 370 mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~-------~l~~--~vfdpd~-v~~~~DH~~p~~ 439 (844)
T TIGR00117 370 KGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDELK-------ELAC--LGFSADL-VLQSFCHTAAYP 439 (844)
T ss_pred CchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHHH-------HhCC--ceECCCc-EEEEeCCCCCCC
Confidence 4689999999999764 3577899999999999999999987664 3443 3556654 678999999887
Q ss_pred ccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccCCe-eeecCCCCcc
Q 002715 125 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 203 (889)
Q Consensus 125 ~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pdt-vvGtDSHT~~ 203 (889)
. ..++..++..++|.+++ ++.+++||+|||||++.| +++||+ ++||||||||
T Consensus 440 ~--~~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~Hqvl~e-----------~~~PG~vivG~DSHT~t 492 (844)
T TIGR00117 440 K--PVDVNTHHTLPDFIMNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 492 (844)
T ss_pred C--HHHHHHHHHHHHHHHHc--------------CCeEECCCCceecccchh-----------hccCCeeEEeccccccc
Confidence 4 35566788888888752 234688999999999876 468875 6999999999
Q ss_pred cCcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHH------------cCcceeEE
Q 002715 204 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRK------------HGVVGMFV 271 (889)
Q Consensus 204 ~GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~------------~G~~gk~v 271 (889)
+ +| ||+|+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|++||+|
T Consensus 493 ~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~l 569 (844)
T TIGR00117 493 P--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRIL 569 (844)
T ss_pred c--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEE
Confidence 7 67 999999999999999999999999999999999999999999999999544332 45789999
Q ss_pred EEecCcccccChhhhhhhhccCcccCceEeEEeCChH-HHHHHhhc----------CCCc-----chHHHHHHHHHHhhh
Q 002715 272 EFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----DTVSMIESYLRANKM 335 (889)
Q Consensus 272 Ef~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De~-t~~YL~~t----------gr~~-----~~~~~~~~y~~~~~l 335 (889)
||. |+++||+++|||||||++|+||++|+||+|++ |++||+.+ ||.+ .+++.+++|++...+
T Consensus 570 Ef~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~l 647 (844)
T TIGR00117 570 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 647 (844)
T ss_pred EEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhccc
Confidence 995 59999999999999999999999999999965 89999995 6654 356778888887777
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-ccCccCCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCc
Q 002715 336 FVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTP 414 (889)
Q Consensus 336 ~~~~~~~D~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 414 (889)
| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 648 l----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~--------------------------------- 690 (844)
T TIGR00117 648 L----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD--------------------------------- 690 (844)
T ss_pred c----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc---------------------------------
Confidence 7 5799999999999999999 9999999999999999998631
Q ss_pred ccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEecc
Q 002715 415 AQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGY 494 (889)
Q Consensus 415 ~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~ 494 (889)
.|+++|||||| |+++|++.||.+| ||++++| ||++|+|||++|+++|+++|++++|.++||.|..|
T Consensus 691 ------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~p 756 (844)
T TIGR00117 691 ------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIP 756 (844)
T ss_pred ------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 25689999999 7999999999999 9999998 99999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHHHHccccc
Q 002715 495 GCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 560 (889)
Q Consensus 495 GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 560 (889)
|||+|+||.+.+. +|++ +|||+||||+||||+. ..+|||||++|||+||+|+|+
T Consensus 757 GCg~C~Gn~~~v~--------~Ge~---vvSTsNRNF~GRmG~~-a~vYLaSP~~aAAsAi~G~I~ 810 (844)
T TIGR00117 757 GCSLCMGNQARVA--------DGAT---VFSTSTRNFPNRMGTG-ANVYLGSAELAAVCALLGKIP 810 (844)
T ss_pred ccccccCCCCcCC--------CCCE---EEeccCCCCCCCCCCC-ccEEeCCHHHHHHHHhCcccC
Confidence 9999999966542 4564 6899999999999984 578999999999999999993
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=6.4e-94 Score=837.92 Aligned_cols=409 Identities=22% Similarity=0.320 Sum_probs=353.7
Q ss_pred ccHHHHHHHHhhhcCC----CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCcc
Q 002715 48 VKSKDVEKIIDWETTS----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQV 123 (889)
Q Consensus 48 ~~~~~ie~il~~~~~~----~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~ 123 (889)
.++|++|||++.+.+. .+|..|..++|.|++||.||++++..|..| ..++.||++ |.+++||.+|+
T Consensus 442 mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~efkel----~~~~~dpdk------v~~~fDH~ap~ 511 (938)
T PLN00094 442 KGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDELKDL----ACLGFSADL------VMQSFCHTAAY 511 (938)
T ss_pred CchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHHHHh----cccccCccc------EEEEccCCCCC
Confidence 4689999999999763 257789999999999999999998766433 113555544 58899999888
Q ss_pred CccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccCC-eeeecCCCCc
Q 002715 124 DVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTT 202 (889)
Q Consensus 124 ~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~ 202 (889)
... .++..++..++|.+++ ++.+++||+|||||++.| ++.|| +++|+|||||
T Consensus 512 p~~--~~~~~~~~lr~Fa~~~--------------Gi~~~~~G~GI~HqvL~e-----------~~lPG~vivGgDSHT~ 564 (938)
T PLN00094 512 PKP--VDVVTHHTLPDFIRNR--------------GGVSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTR 564 (938)
T ss_pred CCH--HHHHHHHHHHHHHHHc--------------CCEEECCCCceecccccc-----------cccCCeEEEeecCCCC
Confidence 754 5556677888888742 345688999999999755 77886 5899999999
Q ss_pred ccCcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHH------HHHHH------cCcceeE
Q 002715 203 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVT------QMLRK------HGVVGMF 270 (889)
Q Consensus 203 ~~GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~------~~L~~------~G~~gk~ 270 (889)
+..|+ ++|.|++|++.+|++|++||++||+|+|+|+|+|++|||+|||||+|+ +.|+. .+.+||+
T Consensus 565 fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~Gki 641 (938)
T PLN00094 565 FPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRI 641 (938)
T ss_pred Ccccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeEE
Confidence 87775 558899999999999999999999999999999999999999999997 44433 3458999
Q ss_pred EEEecCcccccChhhhhhhhccCcccCceEeEEeCCh-HHHHHHhh----------cCCC-----cchHHHHHHHHHHhh
Q 002715 271 VEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH-VTLQYLKL----------TGRS-----DDTVSMIESYLRANK 334 (889)
Q Consensus 271 vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~De-~t~~YL~~----------tgr~-----~~~~~~~~~y~~~~~ 334 (889)
||| +|+++||+++|||||||++|+||++|+||+|+ .|++||+. +|+. +.+++.+++|++...
T Consensus 642 lEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ 719 (938)
T PLN00094 642 LEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADPE 719 (938)
T ss_pred EEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhcc
Confidence 999 77999999999999999999999999999995 68999986 4543 234667888888888
Q ss_pred hcccCCCCCCCCcccEEEEEEcCCc-ccCccCCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCC
Q 002715 335 MFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 413 (889)
Q Consensus 335 l~~~~~~~D~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 413 (889)
+| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 720 ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g~-------------------------------- 763 (938)
T PLN00094 720 LL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTGD-------------------------------- 763 (938)
T ss_pred cc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcCC--------------------------------
Confidence 77 5799999999999999999 9999999999999999997631
Q ss_pred cccccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEec
Q 002715 414 PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 493 (889)
Q Consensus 414 ~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~ 493 (889)
+|++||||||| |+++|++.||.+| +|+++++.||++|+|||+.|+++|+++|++++|.++||.|..
T Consensus 764 -------kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~ 829 (938)
T PLN00094 764 -------KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTEM 829 (938)
T ss_pred -------ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEcC
Confidence 35689999999 7999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHHHHccccc
Q 002715 494 YGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 560 (889)
Q Consensus 494 ~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 560 (889)
||||+|+||++.+ .+|++ +|||+||||+||||+ .+.+|||||++|||+||+|+|+
T Consensus 830 PGCg~CmG~~g~l--------~~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~It 884 (938)
T PLN00094 830 PGCSLCMGNQARV--------AEKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRLP 884 (938)
T ss_pred CccccccCCCCcC--------CCCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCccC
Confidence 9999999996654 24665 789999999999998 5689999999999999999993
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=5.5e-68 Score=521.14 Aligned_cols=170 Identities=76% Similarity=1.160 Sum_probs=167.5
Q ss_pred ecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 002715 663 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 742 (889)
Q Consensus 663 ~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~p~~~ 742 (889)
+|||+||||||||||+|+++||||+||.++|++++||||||+||||||||+||||+|+|++|+|++|.+|++|+|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhhcc
Q 002715 743 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 822 (889)
Q Consensus 743 ~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~ 822 (889)
.|+|||+|++|+++|+|+|||||+|||||||||||||+++++||+||||+||+|||++||+|||||||+|++++++++|+
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~~~~l~ 160 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLG 160 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccCHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEe
Q 002715 823 LTGHERYTID 832 (889)
Q Consensus 823 l~g~e~~~I~ 832 (889)
|+|.|.|+|.
T Consensus 161 l~g~e~~~i~ 170 (171)
T cd01580 161 LTGEETYDII 170 (171)
T ss_pred CCCceeEEee
Confidence 9999998874
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=2.3e-45 Score=410.31 Aligned_cols=418 Identities=23% Similarity=0.348 Sum_probs=327.6
Q ss_pred cHHHHHHHHhhhcCC---CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccCc
Q 002715 49 KSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDV 125 (889)
Q Consensus 49 ~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~ 125 (889)
+-+.++|++.+..+. .++.++..+..-|-.||.||+|.-..|..| +.+|.+.+.+= . .+=|..- +
T Consensus 372 G~TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTrdElk~l----AclgfsaD~vm-----Q-SfCHTAa--y 439 (852)
T COG1049 372 GFTLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTRDELKDL----ACLGFSADLVM-----Q-SFCHTAA--Y 439 (852)
T ss_pred cccHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccHHHHHHH----Hhhcccchhhh-----h-hcccccc--c
Confidence 457899999998664 356788999999999999999997776544 45677643320 0 1123211 1
Q ss_pred cccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccCCee-eecCCCCccc
Q 002715 126 ARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTMI 204 (889)
Q Consensus 126 ~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pdtv-vGtDSHT~~~ 204 (889)
+...|-..+...-.|-.|+ .++. ..||.||+|.+. +-++.|||+ .|+||||.+.
T Consensus 440 pkpvdv~th~~Lp~Fi~~r-------------GgVs-lrpgdGVIHswL-----------NrmllpDtvgtGGDSHTRfp 494 (852)
T COG1049 440 PKPVDVKTHHTLPDFIMNR-------------GGVS-LRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRFP 494 (852)
T ss_pred CCccchhccccchHHHhhc-------------Ccee-cCCCCccHHHHH-----------HhccCCcceecCCccccccc
Confidence 1111212222333455542 2333 347899999986 558899985 8999999998
Q ss_pred CcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHH------HHHH-----c-CcceeEEE
Q 002715 205 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQ------MLRK-----H-GVVGMFVE 272 (889)
Q Consensus 205 GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~------~L~~-----~-G~~gk~vE 272 (889)
=|+ +|+.|+-=++.+.+++...+.+||.|.|+++|+++||+|=+|||-.|-- .|.. + -..|+++|
T Consensus 495 iGi---sFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIlE 571 (852)
T COG1049 495 IGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILE 571 (852)
T ss_pred ccc---eecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeEE
Confidence 664 5677888889999999999999999999999999999999999987642 2331 1 24699999
Q ss_pred EecCcccccChhhhhhhhccCcccCceEeEEeCC-hHHHHHHhhc----------CCCc-----chHHHHHHHHHHhhhc
Q 002715 273 FYGEGMSELSLADRATIANMSPEYGATMGFFPVD-HVTLQYLKLT----------GRSD-----DTVSMIESYLRANKMF 336 (889)
Q Consensus 273 f~G~gv~~LS~~~R~TIaNMa~E~GAt~g~fp~D-e~t~~YL~~t----------gr~~-----~~~~~~~~y~~~~~l~ 336 (889)
. +|+.+|.+++-++++.-++|..|..+.+--+ |..++||+.. |..+ ..++..|+|+....|.
T Consensus 572 i--eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~ll 649 (852)
T COG1049 572 I--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELL 649 (852)
T ss_pred e--ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCcccc
Confidence 9 7799999999999999999999998887764 5568899752 4332 2356677788777665
Q ss_pred ccCCCCCCCCcccEEEEEEcCCc-ccCccCCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcc
Q 002715 337 VDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA 415 (889)
Q Consensus 337 ~~~~~~D~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 415 (889)
.+|.+|+|..+|+|||+.| ||++|+|.+||++..++++..+
T Consensus 650 ----e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~---------------------------------- 691 (852)
T COG1049 650 ----EADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD---------------------------------- 691 (852)
T ss_pred ----CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC----------------------------------
Confidence 6899999999999999999 8999999999999999987631
Q ss_pred cccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccC
Q 002715 416 QLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYG 495 (889)
Q Consensus 416 ~l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~G 495 (889)
.|+-+|||||.. -.-+++++|.+| +|.+=.-..|++|+|-++...++|.++|++.+|-++|+++--||
T Consensus 692 -----~idevFiGSCMt-niGh~ra~~klL------~~~~~~~~~rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~PG 759 (852)
T COG1049 692 -----KIDEVFIGSCMT-NIGHFRAAGKLL------ENAKGELPTRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMPG 759 (852)
T ss_pred -----ccceeeeehhhc-cchhHHHHHHHH------HhcccCCCcceEecCCccccHHHHhhcchHHHHhhccceecCCC
Confidence 256799999975 356899999999 55442223789999999999999999999999999999999999
Q ss_pred cccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHHHHcccccccCCCCCcccCCCCc
Q 002715 496 CTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGK 575 (889)
Q Consensus 496 C~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~ 575 (889)
|+.|+||... +++|.. .+||+.|||++|+|... .+||+|.+++|.+||-|+|
T Consensus 760 CsLCMGNQar--------v~dgat---V~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLGki---------------- 811 (852)
T COG1049 760 CSLCMGNQAR--------VADGAT---VFSTSTRNFPNRLGKGA-NVYLASAELAAVCAILGKI---------------- 811 (852)
T ss_pred cccccccHhh--------hccCCE---EEeeccccCCccccccc-ceeeeccHHHHHHHHHcCC----------------
Confidence 9999999544 345665 46899999999999975 5899999999999999998
Q ss_pred eeccccCCCChHHHHHHhh
Q 002715 576 KIFLRDIWPSSEEVAHVVQ 594 (889)
Q Consensus 576 ~v~l~d~wP~~~ei~~~~~ 594 (889)
|+.+|..+++.
T Consensus 812 --------Pt~eEY~~~v~ 822 (852)
T COG1049 812 --------PTVEEYMAYVA 822 (852)
T ss_pred --------CCHHHHHHHHH
Confidence 88888877765
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=384.22 Aligned_cols=398 Identities=24% Similarity=0.267 Sum_probs=262.6
Q ss_pred HHhhhcccCCCCCCCCcccEEEEEEcCCcccCccCCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceecc
Q 002715 331 RANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNF 410 (889)
Q Consensus 331 ~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 410 (889)
++..+|.+. .||+.+.|+.+++|..-.+.|.+.|..+||+..|+.--.++....-+ + + ......+.+.|
T Consensus 16 ~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd-~-------i--~a~~~ersL~y 84 (502)
T KOG0454|consen 16 SAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTD-K-------I--LARASERSLVY 84 (502)
T ss_pred hhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccch-H-------H--HHhhhhhceee
Confidence 455677664 68999999999999999999999999999999999875443211000 0 0 01112345677
Q ss_pred CCCccc--ccCccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCcee-EEEecCCHHHHHHHHHcCcHHHHHhc
Q 002715 411 HGTPAQ--LRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIK-TSLAPGSGVVTKYLQNSGLQKYLNHL 487 (889)
Q Consensus 411 ~g~~~~--l~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk-~~v~PgS~~V~~~l~~~Gl~~~l~~a 487 (889)
+|.+.. +.--.++-+|||||||++.+||+.||+++ +|.|+.-.+| .+++|||+.|...++.+||.++|.++
T Consensus 85 mGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~ea 158 (502)
T KOG0454|consen 85 MGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEA 158 (502)
T ss_pred ccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHHHhh
Confidence 876543 33445678999999999999999999999 9999988887 78999999999999999999999999
Q ss_pred CcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHHHHcccccccCCCCC
Q 002715 488 GFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEP 567 (889)
Q Consensus 488 G~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~p 567 (889)
||.+...||..|.|+.-+..-..+.| -+|+|||||||+|...++ +|+||.+.+|..+.|+.. ++ +
T Consensus 159 gF~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~-~~---~ 223 (502)
T KOG0454|consen 159 GFYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDL-GF---R 223 (502)
T ss_pred ceehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhcccccccc-cc---c
Confidence 99999999999999986555566664 489999999999999876 999999999999999863 11 1
Q ss_pred cccCCCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccC-CCcccccccCCCCCccccCC-CCc--cccCCCCCc
Q 002715 568 VGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITK-GNPMWNQLSVPSGTLYAWDP-KST--YIHEPPYFK 643 (889)
Q Consensus 568 lg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~y~~i~~-~~~~w~~l~~~~~~~~~w~~-~st--yi~~pp~f~ 643 (889)
.+..++ . .-..|+..-.-+-....+.++ +..+.. .++.-.. .+.|.-++ .|+ -+..++|
T Consensus 224 ~~~~k~---~--~~~~Ps~~l~~~g~s~sv~~~-----~~li~~ia~ds~t~-----i~~~at~e~~s~~sSl~m~~F-- 286 (502)
T KOG0454|consen 224 EFTGKD---S--LKVSPSPFLTLKGESPSVLPA-----KDLIVSIATDSSTD-----IPRVATMEFSSTTSSLGMETF-- 286 (502)
T ss_pred cccccc---c--ccCCCCceEEeCCCCcccccc-----ccchhhhhcccccc-----ccceecccCCCccccccCcce--
Confidence 110000 0 001122110000000000000 000000 0000000 01111110 011 1112222
Q ss_pred cCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhh
Q 002715 644 DMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLV 723 (889)
Q Consensus 644 ~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~ 723 (889)
.+ +-.++.|||+||+|+| ++||+.--.+.. .++.|..+++.
T Consensus 287 ------------~t--Lc~vv~dNiDTD~IIP----------~qfltli~~~~~---------------~~~~f~~~~~d 327 (502)
T KOG0454|consen 287 ------------HT--LCGVVADNIDTDQIIP----------AQFLTLIPSTGL---------------ILSCFYEVALD 327 (502)
T ss_pred ------------ee--eehhhhhhCCcCcccC----------hhhhcccccchh---------------hhhhhhhheec
Confidence 11 2235669999999999 479986322222 45666666542
Q ss_pred hhhcCCCCCC-ceeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhh
Q 002715 724 NKLLNGEVGP-KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNL 802 (889)
Q Consensus 724 n~l~~g~~g~-~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nl 802 (889)
|..-. .+.++.++| .|+. -.|+|+|.|||||||||||+|++.+.|+++|||+||+|||++|+
T Consensus 328 -----g~~k~~~~dFv~~vE---------~~~~---~siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFfrN~ 390 (502)
T KOG0454|consen 328 -----GLPKSFVTDFVLPVE---------PLRK---YSIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFFRNS 390 (502)
T ss_pred -----CCchhhccceecccc---------ccce---eEEEeccCCcccccccccCcchhhhcccceecchhHHHHHHHhH
Confidence 11011 233333332 3333 27999999999999999999999999999999999999999999
Q ss_pred ccCcccceecCCccchhhccCCCCeEEEEeCCC
Q 002715 803 VGMGIIPLCFKPGEDAETHGLTGHERYTIDLPS 835 (889)
Q Consensus 803 i~~GilpL~f~~~~~~~~l~l~g~e~~~I~~~~ 835 (889)
+.+|.+|..-+.....+. ...++..++.+..
T Consensus 391 ~atG~l~~~~s~~~v~de--~~~~dv~~v~l~~ 421 (502)
T KOG0454|consen 391 VATGELPPLPSEVRVCDE--CVTGDVYTVELSV 421 (502)
T ss_pred HhcCCccCCCceeeeccc--ceecceeeEEccc
Confidence 999998875544333332 1234556665554
No 37
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=7.8e-40 Score=318.29 Aligned_cols=141 Identities=35% Similarity=0.488 Sum_probs=124.5
Q ss_pred ecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 002715 663 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 742 (889)
Q Consensus 663 ~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~p~~~ 742 (889)
|..++||||||||||+ ||++ |||.+-+.+.+|. +..|.+. ++ -+...+.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~--------------R~~l~~is~~~~~--~a~n~~~-~~-~~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKY--------------RGHLDNISNNLLI--GAINAEN-GK-ANSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------cccc--------------ccCHHHHHHHHhh--hhhhhhc-cc-cccccccCCCc
Confidence 4568999999999984 7886 6788888888884 4567664 33 34567889999
Q ss_pred cchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhhcc
Q 002715 743 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 822 (889)
Q Consensus 743 ~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~ 822 (889)
.++++++|++|++.|+++|||||+|||||||||||||++++|||+||||+||+|||++||+|+|||||+|+++++++.+
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i- 132 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKI- 132 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888875
Q ss_pred CCCCeEEEEe
Q 002715 823 LTGHERYTID 832 (889)
Q Consensus 823 l~g~e~~~I~ 832 (889)
.++++++|.
T Consensus 133 -~~gd~i~i~ 141 (149)
T cd01578 133 -HPDDKVDIL 141 (149)
T ss_pred -CCCCEEEEe
Confidence 577888885
No 38
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=1e-35 Score=297.53 Aligned_cols=156 Identities=29% Similarity=0.485 Sum_probs=126.0
Q ss_pred EeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 002715 661 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 740 (889)
Q Consensus 661 L~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~p~ 740 (889)
+.++||||+||||+| ++||+. .|.+.|.+..|.++| |+
T Consensus 4 v~~~gdnIdTD~I~P----------~~~l~~---------------~~~~~l~~~~f~~~~------p~----------- 41 (163)
T PRK00439 4 VWKFGDNIDTDVIIP----------ARYLNT---------------SDPQELAKHCMEDLD------PE----------- 41 (163)
T ss_pred EEEeCCCCchhhCCh----------HHHhCC---------------CCHHHHHHHHhccCC------cc-----------
Confidence 578999999999999 589974 245667888888775 11
Q ss_pred CccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhh
Q 002715 741 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 820 (889)
Q Consensus 741 ~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~ 820 (889)
.+.+.+ .+.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+||||+++++ .++.
T Consensus 42 --------f~~~~~---~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~--~~~~ 108 (163)
T PRK00439 42 --------FAKKVK---PGDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE--AVDK 108 (163)
T ss_pred --------hHhhcC---CceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh--HHHh
Confidence 122333 247999999999999999999999999999999999999999999999999999964 2554
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHH
Q 002715 821 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 884 (889)
Q Consensus 821 l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~ 884 (889)
++.++.++||+..+ +|.. ..+|+++.+.. + ++.+++++++||++||++++.
T Consensus 109 --l~~gd~i~idl~~~--------~v~~-~~~g~~~~f~~-l-~~~~~~il~aGGl~~~~~~~~ 159 (163)
T PRK00439 109 --IEDGDEVEVDLETG--------VITN-LTTGEEYKFKP-I-PEFMLEILKAGGLIEYLKKKG 159 (163)
T ss_pred --cCCCCEEEEECCCC--------EEEe-CCCCeEEEEee-C-CHHHHHHHHcCCHHHHHHHhc
Confidence 36788999997752 3432 23478888863 3 789999999999999999875
No 39
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=296.66 Aligned_cols=157 Identities=31% Similarity=0.499 Sum_probs=125.8
Q ss_pred EeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 002715 661 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 740 (889)
Q Consensus 661 L~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~p~ 740 (889)
+.++|||||||||+| ++||+.. .|.+.|.+..|.+.| |
T Consensus 4 v~~~gdnIdTD~IiP----------a~~l~~~--------------~~~~~l~~~~f~~~~-----------------p- 41 (166)
T PRK14023 4 VWKFGDNINTDDILP----------GKYAPFM--------------VGEDRFHNYAFAHLR-----------------P- 41 (166)
T ss_pred eEEcCCCcchhhcch----------HHHhccC--------------CCHHHHHhhhccCCC-----------------h-
Confidence 478999999999999 6999751 244667778887654 1
Q ss_pred CccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhh
Q 002715 741 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 820 (889)
Q Consensus 741 ~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~ 820 (889)
+.+.+|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||++. .+.++.
T Consensus 42 -------~f~~~~~~---g~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~--~~~~~~ 109 (166)
T PRK14023 42 -------EFASTVRP---GDILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFES--EEVVDA 109 (166)
T ss_pred -------hhHhhcCC---CCEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccCC--HHHHHH
Confidence 12345553 479999999999999999999999999999999999999999999999999874 344555
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 002715 821 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 886 (889)
Q Consensus 821 l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~ 886 (889)
+ ..+++++||+..+ +++ .+|+++.+.. .++.+++++++|||++|++++-..
T Consensus 110 l--~~gd~i~vDl~~~--------~v~---~~g~~~~~~~--~~~~~~~il~aGGl~~~~~~~~~~ 160 (166)
T PRK14023 110 L--EDGDEVELDLETG--------VLT---RGGETFQLRP--PPEFLLEALKEGSILEYYRKHGRF 160 (166)
T ss_pred h--CCCCEEEEECCCC--------EEE---ECCEEEEEee--CCHHHHHHHHcCCHHHHHHHhCCC
Confidence 3 4678899998763 333 2567788876 488999999999999999997543
No 40
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=1.7e-35 Score=293.41 Aligned_cols=154 Identities=29% Similarity=0.522 Sum_probs=121.5
Q ss_pred EeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 002715 661 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 740 (889)
Q Consensus 661 L~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~p~ 740 (889)
+.++||||+||||+| ++||.. .|.+.|.+..|.++| |
T Consensus 3 v~~~gdnIdTD~I~P----------~~~l~~---------------~~~~~l~~~~f~~~~-----------------p- 39 (156)
T TIGR02084 3 VHKYGDNVDTDVIIP----------ARYLNT---------------SDPKELAKHCMEDLD-----------------K- 39 (156)
T ss_pred eEEcCCCccHhhccH----------HHHcCc---------------CCHHHHHhhhhccCC-----------------h-
Confidence 478999999999999 689863 255677888888765 1
Q ss_pred CccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhh
Q 002715 741 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 820 (889)
Q Consensus 741 ~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~ 820 (889)
+.+.+++. +.|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+|| |+... .+.++.
T Consensus 40 -------~f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~~~-~~~~~~ 107 (156)
T TIGR02084 40 -------DFVKKVKE---GDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIVES-EEAVDE 107 (156)
T ss_pred -------hHHhhcCC---CCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-CeecC-HHHHHH
Confidence 11344532 4799999999999999999999999999999999999999999999996 55533 445555
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHH
Q 002715 821 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIR 882 (889)
Q Consensus 821 l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGiL~yv~~ 882 (889)
+ ..+++++||+..+ +|+ ...+|++|.+.. + ++.+++++++|||++|+++
T Consensus 108 l--~~gd~i~idl~~~--------~v~-~~~~g~~~~~~~-~-~~~~~~il~~GGl~~~~~~ 156 (156)
T TIGR02084 108 I--EEGDEVEVDLEKG--------IIK-NLTKGKEYKATP-F-PEFLQKIMKAGGLLNYVKK 156 (156)
T ss_pred h--CCCCEEEEECCCC--------EEE-EecCCEEEEeec-C-CHHHHHHHHcCCHHHHhhC
Confidence 4 5678899998752 232 124568888883 3 7899999999999999874
No 41
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.7e-35 Score=292.99 Aligned_cols=152 Identities=30% Similarity=0.530 Sum_probs=121.2
Q ss_pred EeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 002715 661 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 740 (889)
Q Consensus 661 L~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~p~ 740 (889)
+.++||||+||||+| ++||.. + +.|.|.+.+|.++| |
T Consensus 3 v~~~gdnIdTD~IiP----------~~~l~~--~-------------~~~~l~~~~f~~~~------p------------ 39 (154)
T TIGR02087 3 VWKFGDDIDTDEIIP----------GRYLRT--T-------------DPDELASHAMEGID------P------------ 39 (154)
T ss_pred eEEcCCCcchhhCcH----------HHHhCc--C-------------CHHHHHhhccCcCC------c------------
Confidence 368999999999999 699964 2 45667788888764 1
Q ss_pred CccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhh
Q 002715 741 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 820 (889)
Q Consensus 741 ~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~ 820 (889)
+.+.+.+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+||||+++++ +.
T Consensus 40 -------~f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~ 105 (154)
T TIGR02087 40 -------EFAKKVRP---GDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EG 105 (154)
T ss_pred -------hhhhcCCC---CcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HH
Confidence 11123332 47999999999999999999999999999999999999999999999998887764 22
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 002715 821 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 883 (889)
Q Consensus 821 l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~ 883 (889)
+..++.++||+..+ +|+ ..+|+++.+.. + ++.+++++++||+++|++++
T Consensus 106 --i~~gd~i~vdl~~~--------~v~--~~~g~~~~~~~-l-~~~~~~i~~aGGl~~~~~~~ 154 (154)
T TIGR02087 106 --IKDGDEVTVDLETG--------EIR--VNGNEEYKGEP-L-PDFLLEILREGGLLEYLKKR 154 (154)
T ss_pred --CCCCCEEEEECCCC--------EEE--ECCCeEEEEeC-C-CHHHHHHHHcCCHHHHHhcC
Confidence 34678899998752 343 35567788853 3 89999999999999999874
No 42
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-35 Score=295.99 Aligned_cols=166 Identities=25% Similarity=0.442 Sum_probs=130.6
Q ss_pred EEeecC-CCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeec
Q 002715 660 CLLNFG-DSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 738 (889)
Q Consensus 660 vL~~~g-D~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~ 738 (889)
...++| |||+||+|+| +|||+. +++.+| ..+.|..+|+..
T Consensus 10 ~~~pl~~dnIDTD~IIP----------~~fLk~--i~~~gl-------------~k~~f~~~r~~~-------------- 50 (191)
T COG0066 10 RVWPLGRDNVDTDQIIP----------KRFLKT--ITRTGL-------------GKHLFEDWRYLD-------------- 50 (191)
T ss_pred eEEecCCCCCccccCcc----------HHHhcc--cCHhhh-------------hhcccccccccC--------------
Confidence 346777 9999999999 799985 778877 467888888521
Q ss_pred CCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccch
Q 002715 739 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 818 (889)
Q Consensus 739 p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~ 818 (889)
|+ ++.+. ++|+. +.|||||+|||||||||||+||++.+||+||||+||+|||++||+|+||||+...+++..
T Consensus 51 Pd----F~~n~-~~yq~---g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~~~ 122 (191)
T COG0066 51 PD----FVLNV-PPYQG---GDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVT 122 (191)
T ss_pred cc----hhhcC-CccCC---ccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceecChHHHH
Confidence 11 22222 46655 589999999999999999999999999999999999999999999999999998776444
Q ss_pred hhccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCEEEEEEecCCCHHHHHHHHhc----CHHHHHHHHHh
Q 002715 819 ETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG----GILQYVIRNLI 885 (889)
Q Consensus 819 ~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aG----GiL~yv~~~~~ 885 (889)
+.+....+++++||++.+ +|+..++.++.+.+ +++.++++.+| ||+.|.++++.
T Consensus 123 ~l~~~~~g~~i~VDL~~~----------~v~~~~~~~~~f~i---~~f~~~~L~~GlD~iGlt~~~~~~i~ 180 (191)
T COG0066 123 ELFEDVPGDEVTVDLETG----------EVTNPTGGEEPFEI---DDFRREILLNGLDDIGLTLQHKKEID 180 (191)
T ss_pred HHHHhCCCCEEEEEcCCC----------eEEeCCCCEEEccC---CHHHHHHHHcCCcccchHHHHHHHHh
Confidence 444333578899999863 34444444444443 78999999999 99999998764
No 43
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=1.3e-33 Score=295.22 Aligned_cols=172 Identities=28% Similarity=0.375 Sum_probs=124.6
Q ss_pred ccccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCC
Q 002715 654 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 733 (889)
Q Consensus 654 ~i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~ 733 (889)
.++| |+ .++|||||||||+| ++||...... ..+.+.|.+..|..++- + .
T Consensus 68 ~~~G-rv-~k~gDNIdTD~IiP----------a~~l~~~~sn----------~~~~~~l~~~~F~~l~~-~--------~ 116 (246)
T PLN00072 68 TFHG-LC-FVVGDNIDTDQIIP----------AEYLTLVPSK----------PDEYEKLGSYALIGLPA-F--------Y 116 (246)
T ss_pred eEEE-eE-EEeCCCcchhhccc----------HHHhcccccc----------CCCHHHHHHhhhccCCc-c--------h
Confidence 4554 55 69999999999999 5899752110 01246677778876530 0 0
Q ss_pred ceeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCc-ccceec
Q 002715 734 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG-IIPLCF 812 (889)
Q Consensus 734 ~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~G-ilpL~f 812 (889)
+.++...|+.. .+ ..|||||+|||||||||||+|+++++||+||||+||+|||++||+|+| +||++.
T Consensus 117 ~~r~v~~Gd~~-----------~~-~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN~GLllpi~~ 184 (246)
T PLN00072 117 KTRFVEPGEMK-----------TK-YSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYPLES 184 (246)
T ss_pred hhcccCCCCCC-----------CC-ceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHhCCcceeecc
Confidence 11111222111 11 369999999999999999999999999999999999999999999999 788874
Q ss_pred CCccchhhccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 002715 813 KPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 883 (889)
Q Consensus 813 ~~~~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~ 883 (889)
+.+.++.+ ..+++++||+.++ +|+ ...+|++|.+++. +.+++++++|||++|++++
T Consensus 185 -~~~~~e~i--~~Gd~i~VDl~~~--------~v~-n~t~g~~~~~~p~---~~~~~Il~aGGl~~y~r~~ 240 (246)
T PLN00072 185 -EVRICEEC--KTGDVVTVELGNS--------VLI-NHTTGKEYKLKPI---GDAGPVIDAGGIFAYARKT 240 (246)
T ss_pred -cHHHHHhc--CCCCEEEEECCCC--------EEE-ECCCCeEEEecCC---HHHHHHHHcCCHHHHHHhh
Confidence 33445543 4678899998652 232 2356788888863 3499999999999999986
No 44
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=100.00 E-value=1.1e-34 Score=279.41 Aligned_cols=128 Identities=43% Similarity=0.559 Sum_probs=117.3
Q ss_pred hHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCccchhhhHHHHHHhcCCceEEEeCC
Q 002715 687 KYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGA 766 (889)
Q Consensus 687 ~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~ 766 (889)
+||+.+|+...++++|+.+++||++|.+++|.|.++.|.+..+...+.+.+.|+++.+++++++++|+.++.+.||++|+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 58888999999999999999999999999999999999999888888999999999999999999999888887788889
Q ss_pred ccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCC
Q 002715 767 EYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 814 (889)
Q Consensus 767 nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~ 814 (889)
|||||||||||||+++++||+||||+||+|||++||+|||||||+|++
T Consensus 83 nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp SBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred cccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 999999999999999999999999999999999999999999999975
No 45
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.97 E-value=4e-32 Score=259.09 Aligned_cols=121 Identities=45% Similarity=0.726 Sum_probs=95.3
Q ss_pred ecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 002715 663 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 742 (889)
Q Consensus 663 ~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~t~~~p~~~ 742 (889)
++|||||||||+|++. +||.. |++.+.|.+.+|.+.+ |
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~-----------------p--- 38 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVD-----------------P--- 38 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCC-----------------c---
Confidence 5899999999999752 56654 3456677888887542 1
Q ss_pred cchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhhcc
Q 002715 743 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 822 (889)
Q Consensus 743 ~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~ 822 (889)
+.+.+++..+ ..|||||+|||||||||||+|+++.+||+||||+||+|||+||++|+|+|||++++.+.++.
T Consensus 39 -----~f~~~~~~~~-~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~-- 110 (121)
T cd01579 39 -----TFAERAKAAG-PGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDR-- 110 (121)
T ss_pred -----hHHhhcccCC-CeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhh--
Confidence 1123344322 46999999999999999999999999999999999999999999999999999987766664
Q ss_pred CCCCeEEEEeC
Q 002715 823 LTGHERYTIDL 833 (889)
Q Consensus 823 l~g~e~~~I~~ 833 (889)
+..+++++||+
T Consensus 111 ~~~gd~i~id~ 121 (121)
T cd01579 111 FEQGDQLELPL 121 (121)
T ss_pred cCCCCEEEcCC
Confidence 34567777763
No 46
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=99.97 E-value=1.5e-31 Score=272.12 Aligned_cols=166 Identities=26% Similarity=0.397 Sum_probs=122.2
Q ss_pred cccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCc
Q 002715 655 VKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPK 734 (889)
Q Consensus 655 i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~ 734 (889)
++| |+...-||||+||+|+| ++||+. +++ +.+.++.|.++|+.+. .|. ...
T Consensus 7 ~~G-~~~~l~~dnIDTD~IiP----------~rfl~~--~~~-------------~~l~~~~f~~~R~~~~--~g~-~~~ 57 (188)
T TIGR00171 7 HTG-LVAPLDAANVDTDAIIP----------KQFLKR--ITR-------------TGFGKHLFFDWRFLDA--NGK-EPN 57 (188)
T ss_pred EEE-EEEECCCCcCcHhhhhH----------HHHhCc--CCH-------------HHHHHhcccccccccc--ccC-CCC
Confidence 444 55444489999999999 699975 333 3457889999986421 110 011
Q ss_pred eeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCC
Q 002715 735 TIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 814 (889)
Q Consensus 735 t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~ 814 (889)
| .++++. +.|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+|+|||+++.
T Consensus 58 ----p----~F~ln~-~~~~~---~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~ 125 (188)
T TIGR00171 58 ----P----DFVLNQ-PQYQG---ASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSY 125 (188)
T ss_pred ----c----chhhcc-cccCC---CcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCccccCH
Confidence 1 123332 45554 47999999999999999999999999999999999999999999999999999986
Q ss_pred ccchhhcc--CCCCeEEEEeCCCCcccCCCCcEEEEEcCCCEEEEEEecCCCHHHHHHHHhc
Q 002715 815 GEDAETHG--LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 874 (889)
Q Consensus 815 ~~~~~~l~--l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aG 874 (889)
.+..+.+. ...+++++||+..+ + |+..+|+++.+.+ ++..++.|-.|
T Consensus 126 ~~i~~~~~~~~~~g~~i~vDl~~~--------~--v~~~~~~~~~f~i---~~~~r~~ll~G 174 (188)
T TIGR00171 126 DEVKELFGQVENQGLQMTVDLENQ--------L--IHDSEGKVYSFEI---DPFRKHCLING 174 (188)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCC--------E--EEeCCCeEEEEEe---CHHHHHHHHcC
Confidence 55444321 25678899998863 3 3334667788884 67788888777
No 47
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.97 E-value=8e-31 Score=269.35 Aligned_cols=163 Identities=27% Similarity=0.453 Sum_probs=121.5
Q ss_pred cccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCc
Q 002715 655 VKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPK 734 (889)
Q Consensus 655 i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g~~ 734 (889)
++| +++.+.||||+||+|+| ++||+. +++ +.|.++.|.++|+... |...+
T Consensus 7 i~G-~~~~l~~dnIDTD~IiP----------a~fl~~--~~~-------------~~l~~~~f~~~r~~~~---~~~~p- 56 (200)
T PRK01641 7 HTG-LAVPLDRANVDTDQIIP----------KQFLKR--ITR-------------TGFGKGLFDDWRYLDD---GQPNP- 56 (200)
T ss_pred EEE-EEEEcCCCCCChhhcch----------HhHcCc--CCH-------------HHHHHhhhcccccccc---CCCCC-
Confidence 444 56666699999999999 699874 333 4467889999885321 21111
Q ss_pred eeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCC
Q 002715 735 TIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 814 (889)
Q Consensus 735 t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~ 814 (889)
. +++++ ++|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+|||++++
T Consensus 57 --~-------F~ln~-~~~~~---~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~ 123 (200)
T PRK01641 57 --D-------FVLNQ-PRYQG---ASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPE 123 (200)
T ss_pred --C-------ccccc-cccCC---CeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCH
Confidence 1 22332 45644 47999999999999999999999999999999999999999999999999999975
Q ss_pred ccchhhcc-C--CCCeEEEEeCCCCcccCCCCcEEEEEcCCCEEEEEEecCCCHHHHHHHHhc
Q 002715 815 GEDAETHG-L--TGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 874 (889)
Q Consensus 815 ~~~~~~l~-l--~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aG 874 (889)
....+... + ..++.++||+..+ +| +. .|+++.+.+ ++..++++.+|
T Consensus 124 ~~i~~l~~~~~~~~g~~i~vDl~~~--------~v--~~-~~~~~~f~i---~~~~~~~l~~G 172 (200)
T PRK01641 124 EDVDELFKLVEANPGAELTVDLEAQ--------TV--TA-PDKTFPFEI---DPFRRHCLLNG 172 (200)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCC--------EE--ec-CCeEEEEEc---CHHHHHHHHcC
Confidence 43332221 2 5678899998763 33 32 257788873 78899999998
No 48
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.95 E-value=3.3e-29 Score=227.15 Aligned_cols=73 Identities=33% Similarity=0.522 Sum_probs=63.4
Q ss_pred eEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCeEEEEeC
Q 002715 760 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDL 833 (889)
Q Consensus 760 ~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I~~ 833 (889)
.|||+|+|||||||||||+|+++++|+++|||+||+|||++||+|+|+||+++.++..++ .....+++++||+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vdl 91 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVDL 91 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEeC
Confidence 599999999999999999999999999999999999999999999999999988766554 2244566666653
No 49
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.95 E-value=6.2e-29 Score=223.92 Aligned_cols=71 Identities=44% Similarity=0.579 Sum_probs=64.0
Q ss_pred eEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCeEEEEe
Q 002715 760 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID 832 (889)
Q Consensus 760 ~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I~ 832 (889)
+|||||+|||||||||||+|+++++|+++|||+||+|||++|++|+|+|||+|++...++.+ ..+++++||
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~i--~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKL--HTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhhc--CCCCEEEeC
Confidence 59999999999999999999999999999999999999999999999999999987777653 456666664
No 50
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.93 E-value=3.8e-26 Score=270.93 Aligned_cols=165 Identities=22% Similarity=0.294 Sum_probs=122.3
Q ss_pred CccccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCC
Q 002715 653 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG 732 (889)
Q Consensus 653 ~~i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g 732 (889)
..|++ +| .|+||||+||||||| +|+.. |.|.+...+..|.+.+
T Consensus 164 ~~i~g-~V-~KvgdnInTD~I~Pa----------~~~~~--------------Rsdipl~a~~~~e~~~----------- 206 (835)
T PRK09238 164 EKITV-TV-FKVTGETNTDDLSPA----------PDAWS--------------RPDIPLHALAMLKNRR----------- 206 (835)
T ss_pred cccEE-EE-EEeCCCCchhccCCc----------ccccc--------------CCCHHHHHHHhccCCC-----------
Confidence 34654 55 899999999999996 46643 4566666665555432
Q ss_pred CceeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcc-------------cccCceEEEecchhhHHh
Q 002715 733 PKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHR 799 (889)
Q Consensus 733 ~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~-------------~~lGV~aVIA~SFaRIh~ 799 (889)
|+ +.+.++.++..|. .|+|+|+|||||||||||++++ +..| ++|||+||+|||+
T Consensus 207 ------p~-----f~~~i~~~~~~G~-~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g-~~VIa~SfArIFf 273 (835)
T PRK09238 207 ------PG-----PIKQIEELKKKGH-PVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAG-GVVLGGKIAPIFF 273 (835)
T ss_pred ------Cc-----HHHHHHhhccCCC-EEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceE-EEEEeCchHHHHH
Confidence 11 2344444444553 5999999999999999999997 4445 9999999999999
Q ss_pred hhhccCcccceecCCccchhhccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCE-EEEEEecCCCHHHHHHHHhcCHHH
Q 002715 800 SNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGK-SFTCVIRFDTEVELAYFDHGGILQ 878 (889)
Q Consensus 800 ~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~-~~~~~~~~~t~~e~~~~~aGGiL~ 878 (889)
+|++|+|+|||+++ ++. +..++.++|++.++ +|. ..+|+ .+.+.+ .++.+++++++||++|
T Consensus 274 ~Nain~GlLpIe~d----~~~--i~~Gd~i~Id~~~g--------~I~--~~~g~~~~~f~l--~p~~~~div~AGGli~ 335 (835)
T PRK09238 274 NTMEDSGALPIELD----VSK--LNMGDVIDIYPYKG--------KIR--NETGEVIATFKL--KTDVLLDEVRAGGRIP 335 (835)
T ss_pred hhhHHcCCceEEeC----HHH--cCCCCEEEEECCCC--------EEE--eCCCeEEEEEec--CcHHHHHHHHcCChHH
Confidence 99999999999995 333 34678899998763 332 34443 356654 4789999999999999
Q ss_pred HHHHHHh
Q 002715 879 YVIRNLI 885 (889)
Q Consensus 879 yv~~~~~ 885 (889)
|++.|-+
T Consensus 336 ~i~gr~l 342 (835)
T PRK09238 336 LIIGRGL 342 (835)
T ss_pred HHHhccc
Confidence 9998754
No 51
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.93 E-value=8.4e-27 Score=221.65 Aligned_cols=56 Identities=25% Similarity=0.472 Sum_probs=54.4
Q ss_pred ceEEEeCCccCCCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCC
Q 002715 759 DTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 814 (889)
Q Consensus 759 ~~IIVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~ 814 (889)
+.|||+|+|||||||||||+++++.+||++|||+||+|||+||++|+|+|||++++
T Consensus 46 gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 46 GDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred CCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 57999999999999999999999999999999999999999999999999999975
No 52
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.92 E-value=4.8e-26 Score=249.14 Aligned_cols=421 Identities=14% Similarity=0.058 Sum_probs=300.9
Q ss_pred ccHHHHHHHHhhhcCCC---CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCcccCCCCCEEEEecCCCccC
Q 002715 48 VKSKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVD 124 (889)
Q Consensus 48 ~~~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~ 124 (889)
-.++..++|+++..... .|-++...+|-.+.||..+.-+..-+ .++++....+|+|++ +...+||..-+.
T Consensus 65 dp~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~r------iedlr~aAaVv~g~K-ia~n~k~am~vp 137 (502)
T KOG0454|consen 65 DPMTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIR------IEDLREAAAVVDGEK-IAVNPKHAMFVP 137 (502)
T ss_pred CCcccchHHHHhhhhhceeeccCCCCcccceeeecceecccccccc------HHHHhhhhhccccce-eEecccceEEec
Confidence 35788889998875432 35567788899999998887664322 123344445666654 577899976654
Q ss_pred ccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccccccCCCCceeccccccccceeeecCCCcccC-CeeeecCCCCcc
Q 002715 125 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTM 203 (889)
Q Consensus 125 ~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~ 203 (889)
-.+ --....+.+++.|-...-.| .|- .+--+|..-+--.|.||.-..- .+.-.| ....|+||||++
T Consensus 138 gsg--lvkk~aeaegld~if~eagF-~wr-eagcs~clgmnpd~l~~yerca---------stsnRnfEgrqGa~srThl 204 (502)
T KOG0454|consen 138 GSG--LVKKVAEAEGLDRIFNEAGF-YWR-EAGCSFCLGMNPDGLCHYERCA---------STSNRNFEGRQGADSRTHL 204 (502)
T ss_pred Cch--hhHhHHHHHhhHHHHHhhce-ehh-hccccccccCCchhccHHHHhh---------hccCCCccccccccccchh
Confidence 332 11122223333332222222 453 2333555555557999964322 455666 578999999999
Q ss_pred cCcccceeccCCHHHHHHHHcCCceEeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHHcCcceeEEEEecCcccccCh
Q 002715 204 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSL 283 (889)
Q Consensus 204 ~GalG~lg~GVGg~e~~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~ 283 (889)
.++.+.++.|+|+.++.....+....+++|.++.++|.|..+.-..++|+++.++...-..+...+..||-+--. +|+|
T Consensus 205 ma~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m 283 (502)
T KOG0454|consen 205 MAASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGM 283 (502)
T ss_pred hhhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccC
Confidence 999999999999999999998888899999999999999999999999999999888888888899999977655 8999
Q ss_pred hhhhhhhccCcccCceEeEEeCChHHHHHHhhcCCCcchHHHHHHHHHHhhhcccCCCCCCC-CcccEEEEEEcCCcccC
Q 002715 284 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSE-RVYSSYLELNLEEVVPC 362 (889)
Q Consensus 284 ~~R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~-a~Y~~~ieiDLs~veP~ 362 (889)
+.|+|||||..|-+-|-+++|+|-.|+-|-....++.. + -| +.|.+ +.|...+.+|.+..+|.
T Consensus 284 ~~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f--------~----~~----~~dg~~k~~~~dFv~~vE~~~~~ 347 (502)
T KOG0454|consen 284 ETFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCF--------Y----EV----ALDGLPKSFVTDFVLPVEPLRKY 347 (502)
T ss_pred cceeeeehhhhhhCCcCcccChhhhcccccchhhhhhh--------h----hh----eecCCchhhccceecccccccee
Confidence 99999999999999999999998777666544333321 1 12 12333 67899999999999999
Q ss_pred ccCCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEeecCCCCCChhHHHHH
Q 002715 363 VSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGA 442 (889)
Q Consensus 363 vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA 442 (889)
.+.|+. ||.-==++- .|-+|...++|+|+-..-++.|+
T Consensus 348 siii~~-DNFGCGSSR---------------------------------------EHAPv~L~~~GakaivA~Sya~I-- 385 (502)
T KOG0454|consen 348 SIIIGG-DNFGCGSSR---------------------------------------EHAPVCLGAAGAKAIVAPSYARI-- 385 (502)
T ss_pred EEEecc-CCccccccc---------------------------------------ccCcchhhhcccceecchhHHHH--
Confidence 888887 543211110 13356678899999999888665
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCCHHHHH-----HHHHc---CcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhh
Q 002715 443 ALVAKKACELGLEVKPWIKTSLAPGSGVVTK-----YLQNS---GLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAI 514 (889)
Q Consensus 443 ~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~-----~l~~~---Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i 514 (889)
.+|+.++.|++++ +-..+.|..+-++. .+..+ =++.+++..+..=+.|-|..|.++.-+ .+....
T Consensus 386 --FfrN~~atG~l~~--~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad---~I~~~~ 458 (502)
T KOG0454|consen 386 --FFRNSVATGELPP--LPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDAD---GIFAYA 458 (502)
T ss_pred --HHHhHHhcCCccC--CCceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCch---HHHHhh
Confidence 5677788999877 34455555543332 12221 255667777775678899999998522 122222
Q ss_pred ccCceEEEEeeccCCCCCCCCCCccCCceecCHHHHHHHHHccc
Q 002715 515 TENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGS 558 (889)
Q Consensus 515 ~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~ 558 (889)
++ + .+|+|+||||++|||....++|||||.+|+|+++.|+
T Consensus 459 ~k-e---~mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 459 RK-E---GMISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred cc-c---cccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 22 2 2689999999999999999999999999999999998
No 53
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.89 E-value=8.6e-24 Score=203.41 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=57.7
Q ss_pred eEEEeCCccCCCCcchhhhhccc------------ccCceEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCe
Q 002715 760 TVILAGAEYGSGSSRDWAAKGPM------------LLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHE 827 (889)
Q Consensus 760 ~IIVAG~nyG~GSSRE~Aa~~~~------------~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~e 827 (889)
.|+|+|+|||||||||||+++++ .+|++||||+||+|||++|++|+|+||++++. +. +..++
T Consensus 52 ~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~~----~~--~~~GD 125 (131)
T cd01576 52 PVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLDV----SV--LDMGD 125 (131)
T ss_pred eEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeCH----HH--cCCCC
Confidence 49999999999999999999998 77999999999999999999999999999862 11 34566
Q ss_pred EEEEe
Q 002715 828 RYTID 832 (889)
Q Consensus 828 ~~~I~ 832 (889)
.+++|
T Consensus 126 ~l~vD 130 (131)
T cd01576 126 ILNID 130 (131)
T ss_pred EEEeC
Confidence 66654
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.89 E-value=3e-23 Score=245.83 Aligned_cols=165 Identities=20% Similarity=0.242 Sum_probs=120.4
Q ss_pred CccccceEEeecCCCCCcCcccCCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCC
Q 002715 653 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG 732 (889)
Q Consensus 653 ~~i~~a~vL~~~gD~itTDhIsPAG~i~~~s~a~~yL~~~g~~~~~~n~yg~rrgN~evm~rg~Fan~r~~n~l~~g~~g 732 (889)
..|++ + +.++||+|+||+||| |+||..| .+.+.+.+..|.+.+ + +
T Consensus 165 ~~i~g-~-V~k~gddinTD~i~P----------a~~a~sr--------------~D~~~~a~~m~~~~~------p---~ 209 (844)
T TIGR00117 165 EKITV-T-VFKVTGETNTDDLSP----------APDAWTR--------------PDIPLHALAMLKNAR------E---G 209 (844)
T ss_pred hheEE-E-EEEeCCCCchhccCC----------hhhhhcC--------------CCHHHHHHHHhhcCC------c---c
Confidence 34665 4 469999999999999 5898763 233333333333321 0 0
Q ss_pred CceeecCCCccchhhhHHHHHHhcCCceEEEeCCccCCCCcchhhhhcc-------------cccCceEEEecchhhHHh
Q 002715 733 PKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHR 799 (889)
Q Consensus 733 ~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~-------------~~lGV~aVIA~SFaRIh~ 799 (889)
+.+....-++.|.| |+|+|+|||||||||||+.++ +.+| .+|||+||+||||
T Consensus 210 -------------~~~~i~~~~~~Gd~-iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArIFf 274 (844)
T TIGR00117 210 -------------IEPQIEALKQKGFP-VAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPIFF 274 (844)
T ss_pred -------------HHHHHHHhccCCCe-EEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHhhh
Confidence 11112233445533 999999999999999999999 9999 9999999999999
Q ss_pred hhhccCcccceecCCccchhhccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCEE-EEEEecCCCHHHHHHHHhcCHHH
Q 002715 800 SNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQ 878 (889)
Q Consensus 800 ~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~-~~~~~~~~t~~e~~~~~aGGiL~ 878 (889)
||++|.|+|||+++ .+. +..|+.++||+.++ + |...+|++ +.+.+ .++..++++++||++|
T Consensus 275 rnain~Gl~~ie~~----~~~--l~~GD~i~Id~~~G--------~--I~n~~g~~~~~f~~--~p~~l~div~AGGli~ 336 (844)
T TIGR00117 275 NTMEDSGALPIEVD----VSN--LNMGDVIDIYPYKG--------E--ITNHEGELLATFEL--KPETLLDEVRAGGRIP 336 (844)
T ss_pred cchhhcCCCeEEeC----Hhh--cCCCCEEEEECCCC--------E--EEeCCCCEEEEeee--CCHHHHHHHHcCCchh
Confidence 99999999999986 222 45688999998763 2 22235544 77765 3788999999999999
Q ss_pred HHHHHHh
Q 002715 879 YVIRNLI 885 (889)
Q Consensus 879 yv~~~~~ 885 (889)
|+.-|-+
T Consensus 337 ~i~gr~l 343 (844)
T TIGR00117 337 LIIGRGL 343 (844)
T ss_pred hhhcccc
Confidence 9987754
No 55
>PRK14812 hypothetical protein; Provisional
Probab=99.77 E-value=5.3e-19 Score=168.14 Aligned_cols=91 Identities=27% Similarity=0.333 Sum_probs=70.3
Q ss_pred CCCcchhhhhcccccCceEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCeEEEEeCCCCcccCCCCcEEEEE
Q 002715 770 SGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV 849 (889)
Q Consensus 770 ~GSSRE~Aa~~~~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~ 849 (889)
||||||||+|+++.+||+||||+||++||++||+|+||||+.+.++..........++.++||+.++ +|+
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~~~~~l~~~~~g~~i~vDL~~~----------~v~ 71 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREVREKLAQLKPTDQVTVDLEQQ----------KII 71 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHHHHHHHhccCCCCEEEEEcCCC----------EEE
Confidence 9999999999999999999999999999999999999999998765433333356788999998863 333
Q ss_pred cCCCEEEEEEecCCCHHHHHHHHhc
Q 002715 850 TDSGKSFTCVIRFDTEVELAYFDHG 874 (889)
Q Consensus 850 ~~~g~~~~~~~~~~t~~e~~~~~aG 874 (889)
.. ++++++.+ .+..+..|-+|
T Consensus 72 ~~-~~~~~f~i---~~~~~~~Ll~G 92 (119)
T PRK14812 72 SP-VEEFTFEI---DSEWKHKLLNS 92 (119)
T ss_pred cC-CeEEEEEE---CHHHHHHHHhC
Confidence 32 36677776 34444555555
No 56
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.77 E-value=1.7e-18 Score=205.41 Aligned_cols=119 Identities=21% Similarity=0.251 Sum_probs=98.3
Q ss_pred hHHHHHHhcCCceEEEeCCccCCCCcchhhhhcc-------------cccCceEEEecchhhHHhhhhccCcccceecCC
Q 002715 748 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 814 (889)
Q Consensus 748 ~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~-------------~~lGV~aVIA~SFaRIh~~Nli~~GilpL~f~~ 814 (889)
+.....|+.|.| |+|+|+|||||||||||+.++ +.+|+.+ ||+||+||||||++|.|+|||+++
T Consensus 283 ~~i~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~- 359 (938)
T PLN00094 283 AQIEELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD- 359 (938)
T ss_pred HHHHHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEecc-
Confidence 344678889987 899999999999999999999 9999999 999999999999999999999986
Q ss_pred ccchhhccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCEEE-EEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002715 815 GEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSF-TCVIRFDTEVELAYFDHGGILQYVIRNLI 885 (889)
Q Consensus 815 ~~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~~-~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 885 (889)
.+. +..|+.++|++.++ +|. +..+|+++ .+.+ -++..++++++||++||++-|-+
T Consensus 360 ---v~~--i~~GD~I~id~~~G--------~I~-n~~~g~~~~~f~~--~p~~l~d~vrAGGli~~i~gr~l 415 (938)
T PLN00094 360 ---VKN--LNMGDVIDIYPYEG--------VVK-RHGTDEVITTFSL--KTPVLLDEVRAGGRIPLIIGRGL 415 (938)
T ss_pred ---Hhh--cCCCCEEEEEcCCC--------EEE-ecCCCeEEEeccC--CChHHHHHHHcCCcHhhhhcccc
Confidence 222 45688999997763 221 23467777 6654 27889999999999999998754
No 57
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.35 E-value=1.1e-06 Score=89.79 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=74.3
Q ss_pred hHHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccC------------ceEEEecchhhHHhhhhccCcccceecCCc
Q 002715 748 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLG------------VKAVIAKSFERIHRSNLVGMGIIPLCFKPG 815 (889)
Q Consensus 748 ~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lG------------V~aVIA~SFaRIh~~Nli~~GilpL~f~~~ 815 (889)
+.-+..|+.|.+++.| |.--|+||||--|.-...... .-.||...++.||+.-+---|-||++++-.
T Consensus 44 ~~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsGaLPIe~dv~ 122 (204)
T PF06434_consen 44 EQIEELKEKGHPLAYV-GDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGALPIECDVS 122 (204)
T ss_dssp HHHHHHHTTSS-EEEE-EEEEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE---T
T ss_pred HHHHHHHHcCCcEEEe-cCccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEeccccccCCceEEEecc
Confidence 3446778899886666 778999999998876654332 246899999999999999999999987421
Q ss_pred cchhhccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCE-EEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 002715 816 EDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGK-SFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 886 (889)
Q Consensus 816 ~~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~-~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~ 886 (889)
.+..|+.++|+..++ .+...+|+ ..++.+ .++..++-+||||-+|.+.-|-+.
T Consensus 123 ------~l~~Gdvi~I~p~~g----------ki~~~~gev~~~f~l--~p~~l~DevrAGGri~LiiGR~Lt 176 (204)
T PF06434_consen 123 ------SLNTGDVITIYPYEG----------KIYKENGEVISTFEL--KPQTLLDEVRAGGRIPLIIGRGLT 176 (204)
T ss_dssp ------T--TT-EEEEETTTT----------EEEETT--EEEE-----S-TCHHHHHHHTSHHHHHHHHHHH
T ss_pred ------ccCCCcEEEEecCCc----------EEECCCCCEEEEeec--CchhHHHHHhcCCcEEEEechHHH
Confidence 245688999986653 22234553 222333 255667899999999999887543
No 58
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.75 E-value=0.026 Score=65.01 Aligned_cols=69 Identities=25% Similarity=0.309 Sum_probs=60.3
Q ss_pred ccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002715 420 GDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 496 (889)
Q Consensus 420 g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC 496 (889)
++|+.++|| |=--|.+.++..|.+| +|+|+++.++++|. -|+.|+..+.+.|+.+.|+++|.+|+.-.|
T Consensus 288 ~~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 288 EKVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 356677775 8888999999999999 99999999988776 678999999999999999999999997655
No 59
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=95.63 E-value=0.03 Score=66.01 Aligned_cols=118 Identities=20% Similarity=0.273 Sum_probs=76.4
Q ss_pred HHHHHHhcCCceEEEeCCccCCCCcchhhhhcccccCc------------eEEEecchhhHHhhhhccCcccceecCCcc
Q 002715 749 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV------------KAVIAKSFERIHRSNLVGMGIIPLCFKPGE 816 (889)
Q Consensus 749 ~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGV------------~aVIA~SFaRIh~~Nli~~GilpL~f~~~~ 816 (889)
.-+.-++.|++.+. .|.--|+||||--|.-.....+- -.|+..-.+.||+.-+---|-||++++-
T Consensus 213 ~i~~lk~Kg~~vay-vgdvvGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~dv-- 289 (852)
T COG1049 213 QIEALKQKGHPVAY-VGDVVGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVDV-- 289 (852)
T ss_pred HHHHHhhcCceEEE-eccccccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEeee--
Confidence 34677888987544 55569999999987654433222 2455556678999888888999998642
Q ss_pred chhhccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 002715 817 DAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 883 (889)
Q Consensus 817 ~~~~l~l~g~e~~~I~~~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~ 883 (889)
-.+..|+.++|.--++ +++ ...+|+.+.. ..+-++..++-+|+||-+|.+.-|
T Consensus 290 ----~~l~~Gdvi~i~py~g--------ki~-~~~~ge~v~~-f~lkt~~lldevrAGgripliiGr 342 (852)
T COG1049 290 ----SNLEMGDVIDIYPYEG--------KIR-NNNTGEVVAT-FSLKTDVLLDEVRAGGRIPLIIGR 342 (852)
T ss_pred ----ccccccceEEeeccCC--------eee-ccCCCcEEEE-eecCchhHHHHHhcCCceeEEEcc
Confidence 1245678888875442 221 2233432221 122378889999999999877654
No 60
>COG1679 Predicted aconitase [General function prediction only]
Probab=93.23 E-value=0.22 Score=56.51 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=58.4
Q ss_pred ccEEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002715 420 GDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 496 (889)
Q Consensus 420 g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC 496 (889)
+.++..+|| |---|.+.++..|.+| +|++-++.+.++|. -|+.|+.++.+.|+++.|+++|..++.-.|
T Consensus 288 ~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 288 GEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 345667776 7778899999999999 88888888877665 689999999999999999999999997554
No 61
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=90.86 E-value=0.53 Score=54.28 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=56.7
Q ss_pred EEEEEeecCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccC
Q 002715 422 VVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG 501 (889)
Q Consensus 422 V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG 501 (889)
+++++| .|=--|.+.++.-|++| +|++.++.++++|. -|+.|+ +.+.|+.+.++++|+.++.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 556777 68888899999999999 89877777766555 567777 89999999999999999997777 664
No 62
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=27.09 E-value=52 Score=30.15 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=25.4
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHhcCCccC
Q 002715 426 AITSCTNTSNPSVMLGAALVAKKACELGLEVK 457 (889)
Q Consensus 426 ~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~ 457 (889)
+|+||..|.-..+ +||+.|.+.|.+.|.+++
T Consensus 2 ~vtacp~G~Aht~-lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHTF-MAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 5899999987765 467888888888998777
No 63
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.97 E-value=72 Score=31.45 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=27.4
Q ss_pred EEEeecCCCCCChhHHHHHHHHHHHHHhcCCccC
Q 002715 424 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 457 (889)
Q Consensus 424 ~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~ 457 (889)
+++||+|..|=-.-.| ||+-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 7899999999777766 56777888998998877
No 64
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=24.45 E-value=65 Score=31.66 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=24.9
Q ss_pred cEEeccCcccccCCCCCCChHHHhhhc---cCceEEEEeeccCCCC
Q 002715 489 FHIVGYGCTTCIGNSGDIDDAVAAAIT---ENDIVAAAVLSGNRNF 531 (889)
Q Consensus 489 ~~v~~~GC~~CiG~~g~l~~~~~~~i~---~~~~~~~~vsS~NRNF 531 (889)
|.++.|.=+..-+ .+.++..+.+-+. ....+...|.||||||
T Consensus 41 ~vLitpTy~~G~~-~~~vp~~v~~FL~~~~N~~~l~GVigSGNrNf 85 (122)
T PF07972_consen 41 FVLITPTYGFGEN-DGGVPKQVIRFLENPDNRKLLRGVIGSGNRNF 85 (122)
T ss_dssp EEEEEE-BTTTBS-STSS-HHHHHHHHSHHHGGGEEEEEEEE-GGG
T ss_pred EEEEecccCCCCC-CCCCCHHHHHHHHHHHHHhhheeEEecCCcHH
Confidence 4444443333333 3448888888776 4556666789999999
No 65
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=23.75 E-value=71 Score=31.74 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=22.4
Q ss_pred CCCChHHHhhh---ccCceEEEEeeccCCCC
Q 002715 504 GDIDDAVAAAI---TENDIVAAAVLSGNRNF 531 (889)
Q Consensus 504 g~l~~~~~~~i---~~~~~~~~~vsS~NRNF 531 (889)
|.+++.+.+-+ .+.+++.+.+.||||||
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~ 86 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNF 86 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchH
Confidence 56888887777 45567788899999999
No 66
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=22.50 E-value=90 Score=33.00 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=43.5
Q ss_pred ceeEEEecC--CHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCceEEEEeeccCCCCCCCC
Q 002715 459 WIKTSLAPG--SGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRV 535 (889)
Q Consensus 459 ~Vk~~v~Pg--S~~V~~~l~~~Gl~~~l~~aG~~v~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~ 535 (889)
.+.-.|.|| |..+.+-+.+.|+++.|.+.=.. --|-=|||-|+- -|..++... .+......-=-+-+||.=||+
T Consensus 38 ~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~-G~Pv~GTCAGlI-lLakei~~~-~~~~~Lg~mdi~V~RNAfGRQ 113 (194)
T COG0311 38 GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIAD-GLPVFGTCAGLI-LLAKEILDG-PEQPLLGLLDVTVRRNAFGRQ 113 (194)
T ss_pred cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHc-CCceEEechhhh-hhhhhhcCC-CCCcccceEEEEEEccccccc
Confidence 467789999 77788889999999988655332 234556899862 112222110 000110011125689999997
Done!