Query 002715
Match_columns 889
No_of_seqs 339 out of 2865
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 21:55:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002715.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_95-98//hhsearch_pdb/002715hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 1.0 1 1 2043.8 64.7 876 4-886 1-888 (888)
2 1c96_A Mitochondrial aconitase 1.0 1 1 1487.6 54.8 699 49-884 34-751 (753)
3 1l5j_A Aconitate hydratase 2; 1.0 1 1 851.3 38.9 426 47-600 379-837 (865)
4 1l5j_A Aconitate hydratase 2; 1.0 1 1 355.8 -0.3 283 529-887 47-355 (865)
5 2hcu_A 3-isopropylmalate dehyd 1.0 1 1 300.6 9.6 181 639-874 5-187 (213)
6 2pkp_A Homoaconitase small sub 1.0 1 1 292.2 12.1 157 659-886 6-162 (170)
7 1v7l_A 3-isopropylmalate dehyd 1.0 1 1 286.8 8.0 152 661-885 7-159 (163)
8 3vba_A Isopropylmalate/citrama 1.0 1 1 276.6 12.0 161 657-886 6-166 (176)
9 3q3w_A 3-isopropylmalate dehyd 1.0 1 1 265.1 6.9 166 654-874 9-177 (203)
10 3h5j_A 3-isopropylmalate dehyd 1.0 1 1 253.2 6.8 158 654-874 9-169 (171)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=1.00 E-value=1 Score=2043.80 Aligned_cols=876 Identities=61% Similarity=1.065 Sum_probs=825.4
Q ss_pred CCCCHHCCCCEECCCCCCEEEEEECCCCCC---CCH--------HHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 996000025101599850269970799999---811--------133103598655499999998321399994059422
Q 002715 4 ENPFKSILKTLQRPDGGEFGKYYSLPALND---PRI--------ESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFK 72 (889)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~--------E~~lR~~~~~~~~~~~iekil~~~~~~~~~~ei~~~ 72 (889)
.+||++.+++|...++ .|+||+|++++. .+| ||+|||||+..++++++++++.|..+..++.+|.|+
T Consensus 1 ~~~~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~ 78 (888)
T 2b3y_A 1 SNPFAHLAEPLDPVQP--GKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFK 78 (888)
T ss_dssp CCTTGGGEEESCTTST--TCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEEC
T ss_pred CCCHHHHHCCCCCCCC--EEEEEEHHHCCCCCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 9820454332678896--26999847726332310883299999888750578633699999996543468989778896
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54455305874569999999999999909998633789977998149886684351779995149999995432113311
Q 002715 73 PARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKW 152 (889)
Q Consensus 73 pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~i~p~~pv~lviDHsv~~~~~~~~~a~~~n~~~e~~rn~ery~flk~ 152 (889)
||||+|||+||+|+++||++||++++++|.||.++||.+||++++||+||++.++.+++..+|+.++|+||.|||.||||
T Consensus 79 pdrvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w 158 (888)
T 2b3y_A 79 PARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKW 158 (888)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 44788774635789999999899998619984333778870699579987677665477999999999985215777898
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEEC
Q ss_conf 01225663010899942311012222203432798435782662389876557342010357879999999279168445
Q 002715 153 GSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 232 (889)
Q Consensus 153 ~~~~f~~~~v~ppG~GI~Hqv~lE~la~~v~~~~g~~~PdtivGtDSHT~~~galG~la~GVGg~ea~aam~g~~~~~~v 232 (889)
++++|+||+++|||+|||||||+||||++||.++|+++|||||||||||||+||||+|||||||+|++++|+||++||++
T Consensus 159 ~~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~ 238 (888)
T 2b3y_A 159 GSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVL 238 (888)
T ss_dssp HHHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEEC
T ss_pred HHHHCCCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEECC
T ss_conf 89764487888999888065425341554212576113672885688765567440589746889999999559076048
Q ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCHHHHHH
Q ss_conf 82899999620799976111899999999974821059999438666669212243412483249408577078478999
Q 002715 233 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 312 (889)
Q Consensus 233 PevvgV~L~G~L~~gvtakDivL~i~~~l~~~G~vgk~vEf~G~gi~~Lsv~dR~TIaNMa~E~GAt~~~fp~D~~t~~Y 312 (889)
||||+|+|+|+|++|||||||||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+|+||+|++|++|
T Consensus 239 PevvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~Y 318 (888)
T 2b3y_A 239 PQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITY 318 (888)
T ss_dssp CCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHH
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
T ss_conf 97889999704898946568999999996638855559999467325466121010530226549705785683889999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 9650999405899999999810012479999-998202799997588433866899999843366442004653115446
Q 002715 313 LKLTGRSDDTVSMIESYLRANKMFVDYSEPQ-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVG 391 (889)
Q Consensus 313 L~~tgr~~~~~~~~~~y~~~~~l~~~~~~~d-~~a~Y~~~i~iDLs~ieP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~ 391 (889)
|+.|||++++++++|+|.+++++|++. .+| ++|+|+++++||||+|+|+||||++|||+++|++++.+|.+++..+.+
T Consensus 319 L~~~gr~~~~~~~~e~y~~a~~l~~~l-~~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g 397 (888)
T 2b3y_A 319 LVQTGRDEEKLKYIKKYLQAVGMFRDF-NDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQG 397 (888)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTCCCCT-TCGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSB
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCCEEEEEEEEHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 986498467787789999989987534-8887898467999987100557412889933000867722347776521122
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHH
Q ss_conf 77756850011233100148986422576578998414789998569999999999998569833786229996287999
Q 002715 392 FKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVV 471 (889)
Q Consensus 392 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V 471 (889)
++|+..+.......+.++++|+++.|.||+|++|||||||||||||+|+||++|||+|+++|+||+||||++|+|||++|
T Consensus 398 ~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V 477 (888)
T 2b3y_A 398 FKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVV 477 (888)
T ss_dssp TTBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHH
T ss_pred CCCCCCCCHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHH
T ss_conf 34445320010245124118950223688688999806878985779999999999998669977998539996898999
Q ss_pred HHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCHHHHH
Q ss_conf 99999859189997349399445863354798999757876411496278875115777789979866872004979999
Q 002715 472 TKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 551 (889)
Q Consensus 472 ~~~l~~~Gl~~~l~~aG~~i~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~V~S~NRNF~GR~g~~~~~~yLaSP~~va 551 (889)
+.||+++|++++|+++||.|++||||+||||+++++++++++|.++|+++++|||+||||+||||+..+++|||||++||
T Consensus 478 ~~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lva 557 (888)
T 2b3y_A 478 TYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVI 557 (888)
T ss_dssp HHHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHH
T ss_pred HHHHHHCCCHHHHHHCCCEEECCCCCCEECCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCHHHHH
T ss_conf 99999839699999769899678874103787887730343320487148999526778676789876555755899999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98870522346777875447999410044689992888988530368102432002225899665555679988422599
Q 002715 552 AYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 631 (889)
Q Consensus 552 A~AlaG~I~~d~~~~plg~~~~G~~v~l~d~wp~~~ei~~~~~~~~~~~~~~~~~~~i~~~~~~w~~l~~~~~~~~~w~~ 631 (889)
||||+|+|++|+++||+|.+++|++|||+||||+.+|+++++...+++++|.+.|..++.+++.|+.++.+.+++|+|++
T Consensus 558 A~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~ 637 (888)
T 2b3y_A 558 AYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNS 637 (888)
T ss_dssp HHHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCT
T ss_pred HHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99860731136545865558899830023568863556899872289877444430135775001357788887546688
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 98644589987668899999876446459853188777684037999899893665888819995456644566786012
Q 002715 632 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEI 711 (889)
Q Consensus 632 ~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~ItTDhIsPAG~i~~~s~a~~~L~~~gv~~~~~n~yg~rrgn~ev 711 (889)
+||||++||||++++..+.+++++.++|+|+++|||||||||||||+|+++||||+||+++|+++++|||||+|||||||
T Consensus 638 ~St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~v 717 (888)
T 2b3y_A 638 KSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAV 717 (888)
T ss_dssp TCSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCHHH
T ss_conf 76524589986655567888666337579997168766154666766567887899998649985771241223467777
Q ss_pred HCCCCCCCHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEE
Q ss_conf 01233333133442118987993000489953204128999886099619991886679984013210012148208993
Q 002715 712 MARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIA 791 (889)
Q Consensus 712 m~rg~Fan~r~~n~l~~~~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVkaVIA 791 (889)
|+||+|+|+|+.|+|.+ .+|++|+|+|+|+.+++||++++|+++|+++|||||+|||||||||||||+++++||+||||
T Consensus 718 m~rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA 796 (888)
T 2b3y_A 718 MARGTFANIRLLNRFLN-KQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLA 796 (888)
T ss_dssp HHHTTTCCTTCEETTTT-EECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEE
T ss_pred HHHHCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEE
T ss_conf 75412233433232344-45872243699862662656898875498569989877788753789999999819329997
Q ss_pred CCHHHHHHHHHCCCCCCCEECCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHH
Q ss_conf 42156775310137602134089640310169998189996789755679995799994899799999548998999999
Q 002715 792 KSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYF 871 (889)
Q Consensus 792 ~SF~rIh~~Nlvn~GiLpL~~~~~~~~~~l~l~~~e~~~Idl~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~e~~ 871 (889)
+||+||||+||+|||||||+|+++++++++++.+++.++|++.+ .++||..+++...+|++|.+.++++++.|++|+
T Consensus 797 ~SFarIf~~Nli~~Gllpl~~~~~~~~~~~~~~~~~~i~i~l~~---~~~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~ 873 (888)
T 2b3y_A 797 ESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPE---NLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYF 873 (888)
T ss_dssp SCBCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSCSCEEECCCS---SCCTTCEEEEEETTSCEEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCEEEEECCC---CCCCCCEEEEEECCCEEEEEEECCCCHHHHHHH
T ss_conf 15989998546655883175066223988545799369997434---568996799993798499999558999999999
Q ss_pred HHCCHHHHHHHHHHH
Q ss_conf 922999999998741
Q 002715 872 DHGGILQYVIRNLIN 886 (889)
Q Consensus 872 ~aGGil~yv~~~~~~ 886 (889)
++||+|||+++++++
T Consensus 874 ~aGGiL~yv~~~~~~ 888 (888)
T 2b3y_A 874 LNGGILNYMIRKMAK 888 (888)
T ss_dssp HHTSHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHC
T ss_conf 819899999997509
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=1.00 E-value=1 Score=1487.61 Aligned_cols=699 Identities=31% Similarity=0.473 Sum_probs=606.6
Q ss_pred CHHHHHHHHHHHCCCC------C-CEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 4999999983213999------9-40594225445530587456999999999999990999863378997799814988
Q 002715 49 KSKDVEKIIDWETTSP------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSV 121 (889)
Q Consensus 49 ~~~~iekil~~~~~~~------~-~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~i~p~~pv~lviDHsv 121 (889)
.+|+.|||++.|.... . +.+|.++|||+++||+||++++++|+++ |.++ +..|..+++||++
T Consensus 34 ~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~~-------G~~~----v~~P~~~~~DH~v 102 (753)
T 1c96_A 34 PLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISS-------GLPK----VAVPSTIHCDHLI 102 (753)
T ss_dssp CCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHHH-------TCSS----CSSCEEEECCSSC
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEECCCCHHHHHHHHHH-------CCCC----CCCCCCEECCCCC
T ss_conf 9789999999975785444426999789998338988525308999999980-------9998----8898764348987
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCC-EEEECCCC
Q ss_conf 66843517799951499999954321133110122566301089994231101222220343279843578-26623898
Q 002715 122 QVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSH 200 (889)
Q Consensus 122 ~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~v~ppG~GI~Hqv~lE~la~~v~~~~g~~~Pd-tivGtDSH 200 (889)
|++..+..+ +..++.+|.|+|+||+|++++| |++|+|||+||||||++|+ +++|+ ++||||||
T Consensus 103 ~~~~~~~~d-----~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~----------~~~Pg~~ivGtDSH 166 (753)
T 1c96_A 103 EAQLGGEKD-----LRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILEN----------YAYPGVLLIGTDSH 166 (753)
T ss_dssp CBSSCHHHH-----HHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHHH----------TCCTTCEEEESSTT
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCCEECEEECCC----------CCCCCCEEECCCCC
T ss_conf 777776643-----5554365799999999999977-9779899988507370303----------13799678658887
Q ss_pred CCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 76557342010357879999999279168445828999996207999761118999999999748210599994386666
Q 002715 201 TTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSE 280 (889)
Q Consensus 201 T~~~galG~la~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gvtakDivL~i~~~l~~~G~vgk~vEf~G~gi~~ 280 (889)
|||+||||+||||||++|++++|+||+|||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+|||+++
T Consensus 167 T~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~ 246 (753)
T 1c96_A 167 TPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDS 246 (753)
T ss_dssp GGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGG
T ss_pred CCCCCHHHHHEECCCHHHHHHHHHCCEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf 77656224314456789999998288654027868999996116989667899999988853288414899997773154
Q ss_pred CCHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 69212243412483249408577078478999965099940589999999981001247999999820279999758843
Q 002715 281 LSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVV 360 (889)
Q Consensus 281 Lsv~dR~TIaNMa~E~GAt~~~fp~D~~t~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~d~~a~Y~~~i~iDLs~ie 360 (889)
||+++|||||||++|+|||+|+||+|++|++||+.++|++ ..+++++|.+ +| .+|++|.|+++++||||+|+
T Consensus 247 LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~l----~~D~~A~Yd~~ieiDls~le 318 (753)
T 1c96_A 247 ISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---HL----VPDPGCHYDQVIEINLSELK 318 (753)
T ss_dssp SCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---GS----SCCTTCCCSEEEEEEGGGCC
T ss_pred CCCCHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHCCCCH-HHHHHHHHHH---HC----CCCCCCCEEEEEEEECCCCC
T ss_conf 7710023354046653852030057489999998659837-8899999986---43----58999955699999822100
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 38668999998433664420046531154467775685001123310014898642257657899841478999856999
Q 002715 361 PCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVML 440 (889)
Q Consensus 361 P~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~ 440 (889)
|+||+|++|||+++|+++.+.++. ++.+ -+|++||||||||||++|++
T Consensus 319 P~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~-----~~Vd~~~IGSCTN~~~~Dl~- 366 (753)
T 1c96_A 319 PHINGPFTPDLAHPVAEVGSVAEK--------------------------EGWP-----LDIRVGLIGSCTNSSYEDMG- 366 (753)
T ss_dssp CEEECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-----CBEEEEEEBTTTBCSHHHHH-
T ss_pred EEECCCCCCCCEEEHHHHHHHHHH--------------------------CCCC-----CCEEEEEEECCCCCCHHHHH-
T ss_conf 242279997554186885456763--------------------------5886-----41579998157899879999-
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEE
Q ss_conf 99999999985698337862299962879999999985918999734939944586335479899975787641149627
Q 002715 441 GAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIV 520 (889)
Q Consensus 441 aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GCg~CiG~~g~l~~~~~~~i~~~~~~ 520 (889)
+|+.++|+|+++|+ ++.||++|+|||++|+.||+++|++++|+++||.|++||||+||||+++.. ++. .+++
T Consensus 367 ~AA~ilkga~~~~v--~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~--~~~--~~~~-- 438 (753)
T 1c96_A 367 RSAAVAKQALAHGL--KCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD--IKK--GEKN-- 438 (753)
T ss_dssp HHHHHHHHHHTTTC--CCSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS--SCT--TCCE--
T ss_pred HHHHHHCCHHHCCC--CCCCEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCEEEECCCCCCC--CCC--CCCC--
T ss_conf 99999605765699--988508996998999999998584999997696995688506236888755--566--7762--
Q ss_pred EEEEECCCCCCCCCCC-CCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 8875115777789979-866872004979999988705223467778754479994100446899928889885303681
Q 002715 521 AAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLP 599 (889)
Q Consensus 521 ~~~V~S~NRNF~GR~g-~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v~l~d~wp~~~ei~~~~~~~~~~ 599 (889)
++|||+||||+|||| +..+.+|||||++||||||+|+|++|+.+||+ .+++|++|||+| |+.+|+.+
T Consensus 439 -~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~-------- 506 (753)
T 1c96_A 439 -TIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR-------- 506 (753)
T ss_dssp -EEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS--------
T ss_pred -EEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCC-CCCCCCEEEECC--CCCCHHHH--------
T ss_conf -278605678444557899872365589999999973976468000535-577897033149--96200046--------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 024320022258996655556799-8842259998644589987668899999876446459853188777684037999
Q 002715 600 DMFKATYEAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGS 678 (889)
Q Consensus 600 ~~~~~~~~~i~~~~~~w~~l~~~~-~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~ItTDhIsPAG~ 678 (889)
.+|. .++..|+..+.+. +..|.|+++|||++.||+|++. +..++.++++|+++||+||||||||||
T Consensus 507 ~~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~~-----~~~~~~~~~vL~klgd~iTTDhIsPAG- 573 (753)
T 1c96_A 507 AEFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDKW-----DGKDLEDLQILIKVKGKCTTDHISAAG- 573 (753)
T ss_dssp SCCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCCC-----CSSCEEEEEEEEEBCSCCBHHHHBCCG-
T ss_pred HHCC-------CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC-----CCCCCCCCEEEEECCCCCCCCCCCCCC-
T ss_conf 5426-------786333268998876127528987555679988888-----765533543787326875556605664-
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCC--CCCCC---CEEECCCCCCCHHHHHHHHH
Q ss_conf 89989366588881999545664456678601201233333133442118--98799---30004899532041289998
Q 002715 679 IHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--GEVGP---KTIHIPTGEKLSVFDAAMRY 753 (889)
Q Consensus 679 i~~~s~a~~~L~~~gv~~~~~n~yg~rrgn~evm~rg~Fan~r~~n~l~~--~~~g~---~t~~~p~~~~~~i~~~a~~y 753 (889)
+||++ ||+|+|++ .|.|.. +.+++ ++.|+|+++.++++|++++|
T Consensus 574 --------~~L~~----------------------rg~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~~~d~a~~y 622 (753)
T 1c96_A 574 --------PWLKF----------------------RGHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYY 622 (753)
T ss_dssp --------GGGGG----------------------TBCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEECHHHHHHHH
T ss_pred --------HHHCC----------------------CCCHHHHH-HHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf --------34301----------------------66554411-332206643457876614773587413657799999
Q ss_pred HHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCCEECCCCCCHHHCCCCCCEEEEEEC
Q ss_conf 86099619991886679984013210012148208993421567753101376021340896403101699981899967
Q 002715 754 KNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDL 833 (889)
Q Consensus 754 ~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVkaVIA~SF~rIh~~Nlvn~GiLpL~~~~~~~~~~l~l~~~e~~~Idl 833 (889)
+++|+++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+++++++. +.++|.++|+.
T Consensus 623 ~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~~Gllpl~~~~~~~~~~--l~~gd~i~I~g 700 (753)
T 1c96_A 623 KQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNK--IHPVDKLTIQG 700 (753)
T ss_dssp HHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTTCEEEEESSGGGGGG--CCTTCEEEEEC
T ss_pred HHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHCCCCCEEECCCCHHHH--CCCCCEEEECC
T ss_conf 9737973999557678875267777657874756998643899998545546986366047520632--68998899768
Q ss_pred CCCCCCCCCCCEEEE--ECCCCE--EEEEEECCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 897556799957999--948997--999995489989999999229999999987
Q 002715 834 PSSVSEIRPGQDVRV--VTDSGK--SFTCVIRFDTEVELAYFDHGGILQYVIRNL 884 (889)
Q Consensus 834 ~~~~~~l~~g~~v~v--~~~~g~--~~~~~~~~~t~~e~e~~~aGGil~yv~~~~ 884 (889)
.. ++.++..+++ +..+|+ +|.+.++ +|+.|++|+++||||||++++.
T Consensus 701 l~---~l~~g~~v~~~i~~~~g~~~~~~~~~~-~t~~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 701 LK---DFAPGKPLKCIIKHPNGTQETILLNHT-FNETQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp GG---GCCTTCCEEEEEECTTSCEEEEEEECC-CCHHHHHHHHHTSHHHHHHHHS
T ss_pred HH---HCCCCCEEEEEEEECCCCEEEEEEECC-CCHHHHHHHHCCCHHHHHHHHH
T ss_conf 67---737896699999916996799999578-9989999998499999999860
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=851.27 Aligned_cols=426 Identities=22% Similarity=0.311 Sum_probs=369.8
Q ss_pred CCCHHHHHHHHHHHCCC---CCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 55499999998321399---994059422544553058745699999999999999099986337899779981498866
Q 002715 47 QVKSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQV 123 (889)
Q Consensus 47 ~~~~~~iekil~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~i~p~~pv~lviDHsv~~ 123 (889)
.-++|++|||++++.+. .+|.+|.++||||++||+||+|++. .++++|.+ .++++. +..++||.++.
T Consensus 379 ~mg~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~~~-------~~~~lg~~--~~~~d~-vv~~~dh~~~~ 448 (865)
T 1l5j_A 379 DRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRD-------ELKDLACL--GFSADL-VMQSFCHTAAY 448 (865)
T ss_dssp CSCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHHHH-------HHHHTTCC--SCCSSC-EEECCCSSSSS
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCHHHHH-------HHHHCCCC--CCCCCE-EEEECCCCCCC
T ss_conf 988669999999973888658998899984499986357589999-------99972897--578874-99977877767
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCE-EEECCCCCC
Q ss_conf 8435177999514999999543211331101225663010899942311012222203432798435782-662389876
Q 002715 124 DVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTT 202 (889)
Q Consensus 124 ~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~v~ppG~GI~Hqv~lE~la~~v~~~~g~~~Pdt-ivGtDSHT~ 202 (889)
+. +...+++||.++|.+.+|+ .++|||+|||||++.| +++|++ +||||||||
T Consensus 449 ~~---------~~~~e~~~~~~~Fa~~~g~-------~~~~pg~GI~Hq~l~~-----------~~~PG~~ivGtDSHT~ 501 (865)
T 1l5j_A 449 PK---------PVDVNTHHTLPDFIMNRGG-------VSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTR 501 (865)
T ss_dssp CC---------HHHHHHHHHHHHHHHTTTC-------EECCTTSBCHHHHHGG-----------GCCTTCEEEESSTTCC
T ss_pred CC---------HHHHHHHHHHHHHHHHCCC-------EEECCCCCEEEEEECC-----------CCCCCCEEEECCCCCC
T ss_conf 89---------7889999899999997397-------6747998521034135-----------0204636982798866
Q ss_pred CCCCCCCEECCCCHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHC------------CCCEEE
Q ss_conf 55734201035787999999927916844582899999620799976111899999999974------------821059
Q 002715 203 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKH------------GVVGMF 270 (889)
Q Consensus 203 ~~galG~la~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gvtakDivL~i~~~l~~~------------G~vgk~ 270 (889)
|+||+|+ |.|+.+++.+|++|++|+++||+|+|+|+|+|++|||+|||||+|++.++++ +++||+
T Consensus 502 ~~~Glg~---g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~ 578 (865)
T 1l5j_A 502 FPIGISF---PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRI 578 (865)
T ss_dssp CSSSEEC---CCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSE
T ss_pred CCCCCEE---CCCHHHHHHHHHCCCEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
T ss_conf 2235320---7627999999970966504797789999702798987288999999998752533423347623300489
Q ss_pred EEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHH----------CCCC-----CCHHHHHHHHHHHHH
Q ss_conf 999438666669212243412483249408577078-478999965----------0999-----405899999999810
Q 002715 271 VEFYGEGMSELSLADRATIANMSPEYGATMGFFPVD-HVTLQYLKL----------TGRS-----DDTVSMIESYLRANK 334 (889)
Q Consensus 271 vEf~G~gi~~Lsv~dR~TIaNMa~E~GAt~~~fp~D-~~t~~YL~~----------tgr~-----~~~~~~~~~y~~~~~ 334 (889)
||| +|+++||+++|||||||++|+|||+|+||+| ++|++||+. +||. +++++.++.|+++++
T Consensus 579 vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~ 656 (865)
T 1l5j_A 579 LEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPE 656 (865)
T ss_dssp EEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCC
T ss_pred EEE--CCCCCCCHHHHHHHHHCCHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 998--251017855565576410310872699937778999999863343333310487520117899999999874165
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 0124799999982027999975884-338668999998433664420046531154467775685001123310014898
Q 002715 335 MFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 413 (889)
Q Consensus 335 l~~~~~~~d~~a~Y~~~i~iDLs~i-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 413 (889)
+| .+|++|+|+++++||||+| ||+||+|++|||+++++++++.
T Consensus 657 ~l----~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~~~-------------------------------- 700 (865)
T 1l5j_A 657 LL----EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGE-------------------------------- 700 (865)
T ss_dssp CC----CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTTTC--------------------------------
T ss_pred EE----CCCCCCCEEEEEEEECCCCCCCEECCCCCHHHCCCHHHHCCC--------------------------------
T ss_conf 00----368998478999997113778876389984754662553303--------------------------------
Q ss_pred CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEEC
Q ss_conf 64225765789984147899985699999999999985698337862299962879999999985918999734939944
Q 002715 414 PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 493 (889)
Q Consensus 414 ~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lla~~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~ 493 (889)
+|+++|||||||+ ++|++.||.+| ||+++++.|+++|+|||++|+.+|+++|++++|+++||.|.+
T Consensus 701 -------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~ 766 (865)
T 1l5j_A 701 -------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEI 766 (865)
T ss_dssp -------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSCCSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECC
T ss_pred -------CCCEEEEECCCCC-HHHHHHHHHHH------CCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHCCCEECC
T ss_conf -------1016999358899-89999999997------276668998979979899999999985849999975978937
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 58633547989997578764114962788751157777899798668720049799999887052234677787544799
Q 002715 494 YGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKD 573 (889)
Q Consensus 494 ~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~V~S~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~ 573 (889)
||||+||||++.+. ++++ ++||+||||+||||+. ..+|||||++||||||+|+|
T Consensus 767 pgCg~CiGn~~~~~--------~ge~---~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAiaG~i-------------- 820 (865)
T 1l5j_A 767 PGCSLCMGNQARVA--------DGAT---VVSTSTRNFPNRLGTG-ANVFLASAELAAVAALIGKL-------------- 820 (865)
T ss_dssp SSCGGGTCSSSCCC--------TTCE---EEESSSCCCTTSSSTT-CEEEECCHHHHHHHHHHSBC--------------
T ss_pred CCCCCCCCCCCCCC--------CCCE---EEECCCCCCCCCCCCC-CCEEECCHHHHHHHHHCCCC--------------
T ss_conf 85502658388679--------9998---9966886877777887-50677799999999967868--------------
Q ss_pred CCEECCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 941004468999288898853036810
Q 002715 574 GKKIFLRDIWPSSEEVAHVVQKSVLPD 600 (889)
Q Consensus 574 G~~v~l~d~wp~~~ei~~~~~~~~~~~ 600 (889)
|+.+|+.+++...++|+
T Consensus 821 ----------~~p~e~~~~~~~~~~~~ 837 (865)
T 1l5j_A 821 ----------PTPEEYQTYVAQVDKTA 837 (865)
T ss_dssp ----------CCHHHHHHHHHHHHTTH
T ss_pred ----------CCHHHHHHHHHHHCCCC
T ss_conf ----------98899999998622874
No 4
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=355.83 Aligned_cols=283 Identities=19% Similarity=0.242 Sum_probs=215.6
Q ss_pred CCCCCCCCCC------CCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE-CCCCCCCCHHHHH----HHHHH-C
Q ss_conf 7778997986------687200497999998870522346777875447999410-0446899928889----88530-3
Q 002715 529 RNFEGRVHPL------TRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKI-FLRDIWPSSEEVA----HVVQK-S 596 (889)
Q Consensus 529 RNF~GR~g~~------~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v-~l~d~wp~~~ei~----~~~~~-~ 596 (889)
.=|++|+.|. ++++||+|+ |.+++..+.|+++..+++||....|..| +|.|+| +.+|++ +.+.. .
T Consensus 47 ~~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~ 123 (865)
T 1l5j_A 47 DLLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTL 123 (865)
T ss_dssp HHHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCC
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHH-CCHHHHHHHHHHHHHHH
T ss_conf 9997077989980788899999998--71745478649899987510489997319999884-75356899999987620
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 68102432002225899665555679988422599986445899876688999998764464598531887776840379
Q 002715 597 VLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPA 676 (889)
Q Consensus 597 ~~~~~~~~~~~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~ItTDhIsPA 676 (889)
+..++|.+.|.....||+.|+++ ++.|...+-+..+|+.- ..+++ ++ .+++||||||+|||
T Consensus 124 l~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~~----------~~i~g-~v-~~~~~nIdTD~IiP- 184 (865)
T 1l5j_A 124 LMFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPALA----------EKLTV-TV-FKVTGETNTDDLSP- 184 (865)
T ss_dssp TTTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCCC----------SCEEE-EE-EEEEEEEEHHHHSC-
T ss_pred CCHHHHHHHHHHHHCCCHHHHHH------HHHCCCCCCCCCCCCCC----------CEEEE-EE-EECCCCCCHHCCCC-
T ss_conf 20988999999986138989999------87311432002588878----------53899-99-96589775403076-
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 99899893665888819995456644566786012012333331334421189879930004899532041289998860
Q 002715 677 GSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNE 756 (889)
Q Consensus 677 G~i~~~s~a~~~L~~~gv~~~~~n~yg~rrgn~evm~rg~Fan~r~~n~l~~~~~g~~t~~~p~~~~~~i~~~a~~y~~~ 756 (889)
++||..+ +++. .+.+..|.++|. .+.+ .++.+. .-+...++++..
T Consensus 185 ---------a~~l~~~-~d~~-------------~~a~~lf~~~r~--~~~p--------~f~~~~--~~~~~i~~~~~~ 229 (865)
T 1l5j_A 185 ---------APDAWSR-PDIP-------------LHALAMLKNARE--GIEP--------DQPGVV--GPIKQIEALQQK 229 (865)
T ss_dssp ---------GGGGGGT-TSHH-------------HHGGGTTCSCBT--TBCC--------SBTTTB--CSHHHHHHHHTT
T ss_pred ---------HHHHHCC-CCHH-------------HHHHHHHHCCCC--CCCC--------CCCCCC--CCHHHHHHHHCC
T ss_conf ---------6563218-9979-------------999997211235--8983--------212335--604444565349
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHCC-------------CCCCCEEEEECCHHHHHHHHHCCCCCCCEECCCCCCHHHCCC
Q ss_conf 9961999188667998401321001-------------214820899342156775310137602134089640310169
Q 002715 757 GHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGL 823 (889)
Q Consensus 757 g~~~IIVAG~nyG~GSSRE~Aa~a~-------------~~lGVkaVIA~SF~rIh~~Nlvn~GiLpL~~~~~~~~~~l~l 823 (889)
|. .|+|+|+|||||||||||+|++ +.+| ++|||+||+||||+|++|+|+||++++ .+. +
T Consensus 230 G~-~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~~--l 301 (865)
T 1l5j_A 230 GF-PLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VSN--L 301 (865)
T ss_dssp SS-CEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CTT--C
T ss_pred CC-EEEEECCCEECCCCHHHHHHHHHHHHCCCCCCCCHHHCC-CEEEECHHHHHHHHHHHHCCCCEEEEC----HHH--C
T ss_conf 98-799979835268645889999998715777687464428-859964698999977997699568833----866--4
Q ss_pred CCCEEEEEECCCCCCCCCCCCEEEEECCCCEE-EEEEECCCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99818999678975567999579999489979-99995489989999999229999999987410
Q 002715 824 TGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLINV 887 (889)
Q Consensus 824 ~~~e~~~Idl~~~~~~l~~g~~v~v~~~~g~~-~~~~~~~~t~~e~e~~~aGGil~yv~~~~~~~ 887 (889)
..++.++||+..+ +++ ...+|+. +.+.. .++++++++++||+++|++++.+..
T Consensus 302 ~~Gd~i~Idl~~g--------~I~-~~~~g~~~~~f~~--~p~~~~~~v~AGGli~~i~~r~l~~ 355 (865)
T 1l5j_A 302 NMGDVIDVYPYKG--------EVR-NHETGELLATFEL--KTDVLIDEVRAGGRIPLIIGRGLTT 355 (865)
T ss_dssp CTTCEEEEETTTT--------EEE-ETTTCCEEEECCC--SCTHHHHHHHHTSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCC--------EEE-ECCCCEEEEEEEE--CCHHHHHHHHCCCHHHHHHCCHHHH
T ss_conf 9997899988899--------899-7699859999776--9879999998699666530003799
No 5
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=1.00 E-value=1 Score=300.60 Aligned_cols=181 Identities=22% Similarity=0.344 Sum_probs=139.2
Q ss_pred CCCCCCCCCCCCCCCCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 99876688999998764--4645985318877768403799989989366588881999545664456678601201233
Q 002715 639 PPYFKDMTMSPPGPHGV--KGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGT 716 (889)
Q Consensus 639 pp~f~~~~~~~~~~~~i--~~a~vL~~~gD~ItTDhIsPAG~i~~~s~a~~~L~~~gv~~~~~n~yg~rrgn~evm~rg~ 716 (889)
.|||+++.......+.+ ..++++.+.||||||||||| ++||+. +++.+| .+++
T Consensus 5 ~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiP----------a~~L~~--~~~~~l-------------~~~~ 59 (213)
T 2hcu_A 5 ASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILP----------KQFLKL--IDKKGF-------------GKYL 59 (213)
T ss_dssp --------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSC----------GGGGGS--CTTSCC-------------GGGT
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHCCH----------HHHHCC--CCHHHH-------------HHHH
T ss_conf 665587301555688813899999992898778422266----------988673--898788-------------8887
Q ss_pred CCCHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEECCHHH
Q ss_conf 33313344211898799300048995320412899988609961999188667998401321001214820899342156
Q 002715 717 FANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFER 796 (889)
Q Consensus 717 Fan~r~~n~l~~~~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVkaVIA~SF~r 796 (889)
|+++|+.|+ +|.+++. ++.+. .+|+. +.|||||+|||||||||||+|+++++||+||||+||+|
T Consensus 60 f~~~r~~~~--~g~~~p~----------f~~~~-~~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFAr 123 (213)
T 2hcu_A 60 MYEWRYLDN--NYTENPD----------FIFNQ-PEYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGD 123 (213)
T ss_dssp THHHHBSST--TCCBCTT----------SGGGS-GGGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCH
T ss_pred HHCCCCCCC--CCCCCCC----------CCCCC-HHHCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHH
T ss_conf 533402255--8887987----------01151-33058---72899358889997779999999984875899755999
Q ss_pred HHHHHHCCCCCCCEECCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 775310137602134089640310169998189996789755679995799994899799999548998999999922
Q 002715 797 IHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 874 (889)
Q Consensus 797 Ih~~Nlvn~GiLpL~~~~~~~~~~l~l~~~e~~~Idl~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~e~~~aG 874 (889)
|||+||+|||||||+|++++..+.+....+++++||+..+ +|+ ..+| ++.+. + +++..+++.+|
T Consensus 124 IF~~N~in~GlLpl~~~~~~~~~l~~~~~G~~i~VDl~~~--------~I~--~~~g-~~~f~--i-~~~~k~~l~~G 187 (213)
T 2hcu_A 124 IHYNNDLNNGILPIIQPKEVRDKLAKLKPTDEVTVNLFEQ--------KIY--SPVG-DFSFD--I-DGEWKHKLLNG 187 (213)
T ss_dssp HHHHHHHTTTCEEEECCHHHHHHHHTSCTTCEEEEETTTT--------EEE--ETTE-EEECC--C-CHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCEEECHHHHHHHHCCCCCCEEEEECCCC--------EEE--ECCC-EEEEE--C-CHHHHHHHHCC
T ss_conf 9998899769974870889999985149997899988899--------999--7995-49986--8-99999999829
No 6
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=292.25 Aligned_cols=157 Identities=31% Similarity=0.509 Sum_probs=126.4
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCEEEC
Q ss_conf 59853188777684037999899893665888819995456644566786012012333331334421189879930004
Q 002715 659 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 738 (889)
Q Consensus 659 ~vL~~~gD~ItTDhIsPAG~i~~~s~a~~~L~~~gv~~~~~n~yg~rrgn~evm~rg~Fan~r~~n~l~~~~~g~~t~~~ 738 (889)
+ +.++|||||||+|+| ++||. |.|.+.+.+.+|.++| |
T Consensus 6 ~-v~~~~dnIdTD~IiP----------a~~l~---------------~~~~~~l~~~~f~~~~------p---------- 43 (170)
T 2pkp_A 6 R-AHKFGDDVDTDAIIP----------GPYLR---------------TTDPYELASHCMAGID------E---------- 43 (170)
T ss_dssp E-EEECCSCCBHHHHSC----------GGGGS---------------CCCHHHHHTTTTTTTC------T----------
T ss_pred E-EEECCCCCCHHHCCH----------HHHHC---------------CCCHHHHHHHHCCCCC------C----------
T ss_conf 9-997799888554472----------77758---------------7998999997566678------7----------
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCCEECCCCCCH
Q ss_conf 89953204128999886099619991886679984013210012148208993421567753101376021340896403
Q 002715 739 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 818 (889)
Q Consensus 739 p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVkaVIA~SF~rIh~~Nlvn~GiLpL~~~~~~~~ 818 (889)
+.+.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+ +
T Consensus 44 ---------~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~ 107 (170)
T 2pkp_A 44 ---------NFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----T 107 (170)
T ss_dssp ---------THHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----G
T ss_pred ---------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCEEEEC----H
T ss_conf ---------45773788---8789936877898788999999998587399973388999856887799569835----8
Q ss_pred HHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 10169998189996789755679995799994899799999548998999999922999999998741
Q 002715 819 ETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 886 (889)
Q Consensus 819 ~~l~l~~~e~~~Idl~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~e~~~aGGil~yv~~~~~~ 886 (889)
+ .+.+++.++|++.. + ++. ...+|++|.+. ..++.+++++++||+|||++++++.
T Consensus 108 ~--~l~~gd~i~idl~~-------~-~v~-~~~~g~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~~ 162 (170)
T 2pkp_A 108 D--EIKDGDIVEIDLDK-------E-EIV-ITNKNKTIKCE--TPKGLEREILAAGGLVNYLKKRKLI 162 (170)
T ss_dssp G--GCCTTCEEEEETTT-------T-EEE-EGGGTEEEECB--CCCHHHHHHHHTTSHHHHHHHHHHH
T ss_pred H--HCCCCCEEEEECCC-------C-EEE-ECCCCEEEEEE--ECCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 8--86999689998879-------9-999-77998599999--6999999999929999999998776
No 7
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=1.00 E-value=1 Score=286.79 Aligned_cols=152 Identities=35% Similarity=0.537 Sum_probs=121.9
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCEEECCC
Q ss_conf 85318877768403799989989366588881999545664456678601201233333133442118987993000489
Q 002715 661 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 740 (889)
Q Consensus 661 L~~~gD~ItTDhIsPAG~i~~~s~a~~~L~~~gv~~~~~n~yg~rrgn~evm~rg~Fan~r~~n~l~~~~~g~~t~~~p~ 740 (889)
+.++|||||||||+|| +||. |+|.+.+.+.+|.++| |
T Consensus 7 ~~~~~dnidTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (163)
T 1v7l_A 7 VWKFGDDISTDEITPG----------RYNL---------------TKDPKELAKIAFIEVR-----------------P- 43 (163)
T ss_dssp EEECCSCCBHHHHSCT----------TSCC---------------CSCHHHHHHHTTTTTC-----------------T-
T ss_pred EEECCCCCCHHCCCHH----------HHHC---------------CCCHHHHHHHHCCCCC-----------------C-
T ss_conf 9983998884025437----------7738---------------7998899997677668-----------------6-
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCCEECCCCCCHHH
Q ss_conf 95320412899988609961999188667998401321001214820899342156775310137602134089640310
Q 002715 741 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 820 (889)
Q Consensus 741 ~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVkaVIA~SF~rIh~~Nlvn~GiLpL~~~~~~~~~~ 820 (889)
+.+.+++. +.|||||+|||||||||||||+++++||+||||+||+||||+||+|||+|||+|+ ++
T Consensus 44 -------~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~- 108 (163)
T 1v7l_A 44 -------DFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TE- 108 (163)
T ss_dssp -------THHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CT-
T ss_pred -------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCEEEEC----HH-
T ss_conf -------54773788---8789955867898888999999998598799971388999856887799669823----78-
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEE-EEEEECCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 16999818999678975567999579999489979-999954899899999992299999999874
Q 002715 821 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLI 885 (889)
Q Consensus 821 l~l~~~e~~~Idl~~~~~~l~~g~~v~v~~~~g~~-~~~~~~~~t~~e~e~~~aGGil~yv~~~~~ 885 (889)
.+.+++.++|++.. + ++ + +|++ +.+. ..++.+++++++||+|||+++++.
T Consensus 109 -~l~~gd~i~idl~~-------~-~v--~--~g~~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~ 159 (163)
T 1v7l_A 109 -GLKDGDLVTVNWET-------G-EV--R--KGDEILMFE--PLEDFLLEIVREGGILEYIRRRGD 159 (163)
T ss_dssp -TCCTTCEEEEETTT-------T-EE--E--ETTEEEECE--ECCHHHHHHHHTTSHHHHHHHSCC
T ss_pred -HCCCCCEEEEECCC-------C-EE--E--CCCEEEEEE--CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf -82899389998669-------9-89--8--891899987--299999999991999999999876
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=276.64 Aligned_cols=161 Identities=25% Similarity=0.477 Sum_probs=126.1
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCEE
Q ss_conf 64598531887776840379998998936658888199954566445667860120123333313344211898799300
Q 002715 657 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTI 736 (889)
Q Consensus 657 ~a~vL~~~gD~ItTDhIsPAG~i~~~s~a~~~L~~~gv~~~~~n~yg~rrgn~evm~rg~Fan~r~~n~l~~~~~g~~t~ 736 (889)
..+++ ++|||||||+|+| ++||+. .+.+.+.+.+|.++|
T Consensus 6 ~g~v~-~~gdnIdTD~IiP----------a~~l~~---------------~~~~~l~~~~f~~~~--------------- 44 (176)
T 3vba_A 6 KGRVW-KFGNNVDTDAILP----------ARYLVY---------------TKPEELAQFVMTGAD--------------- 44 (176)
T ss_dssp EEEEE-ECCSSCBHHHHSC----------GGGTTC---------------CSHHHHGGGTTTTTC---------------
T ss_pred EEEEE-EECCCCCHHHCCC----------HHHHCC---------------CCHHHHHHHHCCCCC---------------
T ss_conf 88999-9089765664380----------877086---------------998999975176778---------------
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCCEECCCCC
Q ss_conf 04899532041289998860996199918866799840132100121482089934215677531013760213408964
Q 002715 737 HIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 816 (889)
Q Consensus 737 ~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVkaVIA~SF~rIh~~Nlvn~GiLpL~~~~~~ 816 (889)
| +.+.+|+. +.|||||+|||||||||||||+++.+||+||||+||+|||++||+|+|+||++++ +
T Consensus 45 --p--------~F~~~~~~---g~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~ 109 (176)
T 3vba_A 45 --P--------DFPKKVKP---GDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECK--G 109 (176)
T ss_dssp --T--------THHHHCCT---TCEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--T
T ss_pred --C--------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEECC--H
T ss_conf --3--------17875478---8889967876288567899999999697499965277899866987699868761--6
Q ss_pred CHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 0310169998189996789755679995799994899799999548998999999922999999998741
Q 002715 817 DAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 886 (889)
Q Consensus 817 ~~~~l~l~~~e~~~Idl~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~e~~~aGGil~yv~~~~~~ 886 (889)
.++. +..++.++||+.+ ++|. ...+|+++.+. .+ ++.+++++++||++||++++...
T Consensus 110 ~~~~--~~~gd~i~idl~~--------~~v~-~~~~g~~~~~~-~l-~~~~~~ii~aGGli~~~k~~~~~ 166 (176)
T 3vba_A 110 ISEK--VNEGDELEVNLET--------GEIK-NLTTGEVLKGQ-KL-PEFMMEILEAGGLMPYLKKKMAE 166 (176)
T ss_dssp HHHH--CCTTCEEEEETTT--------CEEE-ETTTCCEEECC-CC-CHHHHHHHHHTSHHHHHHHHHHT
T ss_pred HHHH--CCCCCEEEEECCC--------CEEE-ECCCCEEEEEE-CC-CHHHHHHHHCCCHHHHHHHHCCH
T ss_conf 8874--5999889998899--------9999-67898699985-49-99999999939989999985334
No 9
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=1.00 E-value=1 Score=265.06 Aligned_cols=166 Identities=24% Similarity=0.356 Sum_probs=123.8
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 64464598531887776840379998998936658888199954566445667860120123333313344211898799
Q 002715 654 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 733 (889)
Q Consensus 654 ~i~~a~vL~~~gD~ItTDhIsPAG~i~~~s~a~~~L~~~gv~~~~~n~yg~rrgn~evm~rg~Fan~r~~n~l~~~~~g~ 733 (889)
.++| +++.+.+||||||+|+| ++||+. +++.+| .+++|.++|+.. .|.+.+
T Consensus 9 ~~~G-~a~~l~~dnIDTD~IIP----------~~fL~~--~~~~~l-------------g~~~f~~~R~~~---~g~~~~ 59 (203)
T 3q3w_A 9 IHKG-IACPLEYANIDTDQIIP----------KQFLLA--VSKQGF-------------GKHLFHDLRYLD---DKESVL 59 (203)
T ss_dssp EEEE-EEEEECCSSCBHHHHSC----------GGGCBS--SCSSCS-------------GGGTTHHHHBSS---SSSCSB
T ss_pred EEEE-EEEECCCCCCCHHHCCH----------HHHCCC--CCHHHH-------------HHHHHHHHHCCC---CCCCCC
T ss_conf 9999-99988886568401550----------977486--898899-------------886434322135---678778
Q ss_pred CEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCCEECC
Q ss_conf 30004899532041289998860996199918866799840132100121482089934215677531013760213408
Q 002715 734 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 813 (889)
Q Consensus 734 ~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVkaVIA~SF~rIh~~Nlvn~GiLpL~~~ 813 (889)
. | .++.+. .+|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+||||++++
T Consensus 60 ~----p----dF~~n~-~~~~~---~~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~ 127 (203)
T 3q3w_A 60 N----M----DFNLNK-KEYQN---SSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELA 127 (203)
T ss_dssp C----T----TSGGGS-GGGTT---EEEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTTCEEEECC
T ss_pred C----C----CHHHCC-CCCCC---CCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEC
T ss_conf 9----8----811265-33589---8889969877888767899999998295299978289999978876798759868
Q ss_pred CCCCHHHCC---CCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 964031016---9998189996789755679995799994899799999548998999999922
Q 002715 814 PGEDAETHG---LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 874 (889)
Q Consensus 814 ~~~~~~~l~---l~~~e~~~Idl~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~e~~~aG 874 (889)
+........ ...+++++||++.+ +|+ . +|.++.+.. +++..+.+.+|
T Consensus 128 ~~~~~~l~~~~~~~~g~~i~VDL~~~--------~i~--~-~g~~~~f~i---~~~~r~~Ll~G 177 (203)
T 3q3w_A 128 KDEVLEIVDELKKSQDKNIEISLLEK--------RVF--F-KDKIFSFDL---DDFHRICLLEG 177 (203)
T ss_dssp HHHHHHHHHHHHHCSCCEEEEETTTT--------EEE--E-TTEEEECCC---CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCC--------EEE--E-CCEEEEEEE---CHHHHHHHHCC
T ss_conf 89999999986238997899988899--------999--8-999999984---99999999809
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=1.00 E-value=1 Score=253.23 Aligned_cols=158 Identities=23% Similarity=0.306 Sum_probs=118.2
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 64464598531887776840379998998936658888199954566445667860120123333313344211898799
Q 002715 654 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 733 (889)
Q Consensus 654 ~i~~a~vL~~~gD~ItTDhIsPAG~i~~~s~a~~~L~~~gv~~~~~n~yg~rrgn~evm~rg~Fan~r~~n~l~~~~~g~ 733 (889)
.+++ +++.+.|||||||+|+| ++||+. +++.+ +.+.+|.++|.. |
T Consensus 9 ~~~G-~~~~l~~dnIdTD~IiP----------a~~L~~--~~~~~-------------l~~~~f~~~R~~---------p 53 (171)
T 3h5j_A 9 THSG-IGVPLRRSNVDTDQIIP----------AVFLKR--VTRTG-------------FEDGLFAGWRSD---------P 53 (171)
T ss_dssp EEEE-EEEEECCCSCCHHHHSC----------GGGTTC--CSCSC-------------CGGGTTTTGGGS---------T
T ss_pred EEEE-EEEECCCCCCCCCCCCC----------HHHCCC--CCHHH-------------HHHHHHCCCCCC---------C
T ss_conf 9999-99986687668301774----------655487--99899-------------988754067679---------6
Q ss_pred CEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCCEECC
Q ss_conf 30004899532041289998860996199918866799840132100121482089934215677531013760213408
Q 002715 734 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 813 (889)
Q Consensus 734 ~t~~~p~~~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~a~~~lGVkaVIA~SF~rIh~~Nlvn~GiLpL~~~ 813 (889)
.++.++ .+|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+|+|||+++
T Consensus 54 ----------~F~~~~-~~~~~---~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~ 119 (171)
T 3h5j_A 54 ----------AFVLNL-SPFDR---GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVA 119 (171)
T ss_dssp ----------TSGGGS-TTGGG---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTCEEEECC
T ss_pred ----------CCCCCC-CCCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEEEC
T ss_conf ----------800065-02479---8689968873488677999999998699599988478999868987697539968
Q ss_pred CCCCHHHC---CCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 96403101---69998189996789755679995799994899799999548998999999922
Q 002715 814 PGEDAETH---GLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 874 (889)
Q Consensus 814 ~~~~~~~l---~l~~~e~~~Idl~~~~~~l~~g~~v~v~~~~g~~~~~~~~~~t~~e~e~~~aG 874 (889)
+....+.. ....+++++||+..+ +|+ . +|+++++.. .+...+.+.+|
T Consensus 120 ~~~~~~l~~~~~~~~g~~i~VDl~~~--------~i~--~-~g~~~~F~i---~~~~k~~ll~G 169 (171)
T 3h5j_A 120 QDDVELLWKLIEQSPGLEITANLQDR--------IIT--A-ATVVLPFKI---DDHSAWRLLEG 169 (171)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEETTTT--------EEE--E-TTEEEECBC---CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCC--------EEE--E-CCEEEEEEE---CHHHHHHHHHC
T ss_conf 89999999986249996899998899--------999--8-999999998---99999998818
Done!